Query 014729
Match_columns 419
No_of_seqs 144 out of 245
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3933 Mitochondrial ribosoma 100.0 2.1E-37 4.5E-42 300.9 11.1 258 132-408 2-273 (296)
2 PF10213 MRP-S28: Mitochondria 100.0 1.3E-36 2.8E-41 266.5 12.9 121 281-405 1-127 (127)
3 PRK09256 hypothetical protein; 99.5 4.2E-13 9E-18 119.9 11.3 102 291-393 15-116 (138)
4 KOG3429 Predicted peptidyl-tRN 99.0 3.3E-09 7.1E-14 97.9 10.1 93 286-381 38-132 (172)
5 PF00472 RF-1: RF-1 domain; I 98.1 4.4E-06 9.4E-11 72.2 5.9 61 291-376 14-74 (113)
6 COG1186 PrfB Protein chain rel 97.3 0.00012 2.5E-09 71.5 1.7 98 291-389 112-211 (239)
7 TIGR03072 release_prfH putativ 97.1 0.002 4.3E-08 61.5 7.7 62 291-377 108-169 (200)
8 PRK08179 prfH peptide chain re 96.8 0.0045 9.8E-08 59.1 7.8 62 291-377 109-170 (200)
9 PRK00591 prfA peptide chain re 96.5 0.01 2.2E-07 61.1 8.4 63 291-378 223-285 (359)
10 PRK07342 peptide chain release 96.5 0.0092 2E-07 61.1 7.9 62 291-377 201-262 (339)
11 PRK08787 peptide chain release 96.5 0.0095 2.1E-07 60.4 7.9 61 291-376 178-238 (313)
12 TIGR00019 prfA peptide chain r 96.4 0.0097 2.1E-07 61.3 7.9 62 291-377 223-284 (360)
13 PRK06746 peptide chain release 96.4 0.011 2.4E-07 60.2 8.2 62 291-377 199-260 (326)
14 PRK05589 peptide chain release 96.4 0.0096 2.1E-07 60.6 7.7 61 291-376 198-258 (325)
15 PRK00578 prfB peptide chain re 95.8 0.029 6.2E-07 58.0 7.9 62 291-377 237-298 (367)
16 TIGR00020 prfB peptide chain r 95.6 0.038 8.3E-07 57.1 7.7 62 291-377 237-298 (364)
17 KOG2726 Mitochondrial polypept 88.3 0.75 1.6E-05 48.2 5.2 87 291-402 250-342 (386)
18 COG0216 PrfA Protein chain rel 80.3 3.4 7.5E-05 43.1 5.7 64 291-379 225-288 (363)
19 PRK14136 recX recombination re 54.1 71 0.0015 33.1 8.6 105 75-193 173-291 (309)
20 KOG3170 Conserved phosducin-li 49.8 18 0.0004 35.8 3.5 62 288-354 91-153 (240)
21 COG3549 HigB Plasmid maintenan 35.8 38 0.00082 29.6 3.0 38 86-123 8-46 (94)
22 PF08671 SinI: Anti-repressor 32.7 56 0.0012 23.0 2.9 17 177-193 2-18 (30)
23 KOG2830 Protein phosphatase 2A 31.9 11 0.00025 38.9 -0.9 31 35-94 49-79 (324)
24 smart00540 LEM in nuclear memb 30.1 32 0.00069 26.0 1.4 37 75-112 2-38 (44)
25 KOG0718 Molecular chaperone (D 29.3 55 0.0012 36.0 3.5 65 173-251 15-79 (546)
26 COG5328 Uncharacterized protei 27.7 34 0.00074 31.8 1.4 40 88-129 98-138 (160)
27 PF10350 DUF2428: Putative dea 25.1 43 0.00094 32.6 1.8 58 190-249 58-124 (255)
28 KOG3281 Mitochondrial F1-ATPas 24.4 79 0.0017 32.2 3.4 54 66-131 97-154 (273)
29 PRK02853 hypothetical protein; 23.5 38 0.00082 32.1 1.0 41 87-129 98-139 (161)
30 PRK10738 hypothetical protein; 22.6 1.7E+02 0.0036 26.1 4.8 38 305-342 76-114 (134)
31 PRK08178 acetolactate synthase 22.3 79 0.0017 27.6 2.6 75 4-93 21-96 (96)
32 PF04988 AKAP95: A-kinase anch 21.8 57 0.0012 31.1 1.8 32 65-96 126-157 (165)
No 1
>KOG3933 consensus Mitochondrial ribosomal protein S28 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-37 Score=300.93 Aligned_cols=258 Identities=24% Similarity=0.174 Sum_probs=226.4
Q ss_pred CCccchhccchhhhhhccchhhhhhhhhhhHhhhhccccccccCCchhhHHHHHHHHhcCcccchhhHHHHhhhcccccc
Q 014729 132 DDVKDQEFESDFEELYATDEEIDDLYSARDHVVKKMVKDEYFNMDDKKWDEMIGEAVQHGYLKDTRECEEILEDMLSWDK 211 (419)
Q Consensus 132 ~~v~d~~fesdfe~~~~td~e~~dl~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ed~~~~d~ 211 (419)
.+|.+.+++++|++.++++.+..++|++ ++++.+|+.-++|||++ ++..++-.|+..+..+ .++++.+..|+.
T Consensus 2 ~~~~~~~~~~~~~~~r~~~~~~e~~~~s-~~~~~~~~~rt~~~~r~-----~r~~~~~~~~~~~~~~-q~~ls~~~~~~~ 74 (296)
T KOG3933|consen 2 ARVLTMSKCLNQSAGRELKTVRERPAFS-DLYMHPLKWRTLPPQRI-----ERAFNLPPRTEKMDVE-QDWLSVSPFAAT 74 (296)
T ss_pred cccchhhhhhhhhhhhhhhhhhcccccc-ccccccccccCCCccch-----hhhccCCccccccchh-hhhhhccccccc
Confidence 5788999999999999999999999999 99999999999999999 8999999999999999 999999999999
Q ss_pred cCCcchhhHHHHHHHHhhcccccccCchhHHHHHhhhhhhHHHHHHHHhhhhcCCCCCCC-CCC------CCCCCCCCCC
Q 014729 212 LLPDDMKKKVEQKFNELGDMCESGELEPEQAYELFKKFEDEVVAEYMKQVETEEPPKYDF-PAV------PDTKKDIDDP 284 (419)
Q Consensus 212 ~~~Ddi~~~~~~~~~e~rd~~e~~rl~~e~ay~~~ka~E~pll~~y~r~iE~E~P~l~~~-~~~------~~r~~kPF~P 284 (419)
|.|+..+-.+.++ +...++|..+...-+.+++.|+.|.+ +.+...++|+.+ +..+ |.- |.+ |.+
T Consensus 75 ~~p~~v~l~vR~~-~~~~~k~~~~~ke~n~el~~i~nf~h---lt~~~i~qh~e~-~~r~~t~~~~ll~~~~~----~~~ 145 (296)
T KOG3933|consen 75 FRPSSVPLPVRMG-SAYVSKGAPIEKEGNLELKKIPNFLH---LTPPAIQQHCEA-LKRFCTYEPGLLDYPQK----KKR 145 (296)
T ss_pred cccccccceeecc-ccccccCCCCCccccccccccCcccc---cChHHHHHHHHH-HHhhcccccccCCCchh----hCC
Confidence 9999999999999 99999999999999999999999998 444444555555 3333 111 222 222
Q ss_pred CCCCCceEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHH
Q 014729 285 PGEGPILRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDC 364 (419)
Q Consensus 285 P~~~~ILr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl 364 (419)
|. +++|.++.|+.+|++.+||.+|+|+|+|.+++|+|+++|+|||+.|||+|||+.+|+++|+||||+++.||++||
T Consensus 146 ~~---p~~i~~t~~~~sg~s~~~p~~RvVvmsvk~~eL~L~ehq~~klr~Lvg~RY~~~tD~~tissDR~~~r~QN~~y~ 222 (296)
T KOG3933|consen 146 HL---PISIQSTDYFASGPSIRHPNSRVVVMSVKVKELGLSEHQRKKLRRLVGKRYNKTTDLLTISSDRCEHREQNYDYA 222 (296)
T ss_pred CC---cccceeEEEeccCCcccCCCCceEEEEEEecccCccHHHHHHHHHHhhhccCCCCCeEEEeccccchhhHhHHHH
Confidence 21 247889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCC-----CCCcccchhHHhh--hcCCchhHHHhhhhh
Q 014729 365 LRTLFSLIEEAGKANK-----MVDDARASYVKDR--LRANPAFMERLRAKV 408 (419)
Q Consensus 365 ~d~L~~LI~EAk~~ek-----iplDTRhtk~kkR--kk~~~~FPeeW~~~~ 408 (419)
+++|+.||+||+++++ +++|++|...+.- +.+...|+..|+.+.
T Consensus 223 ~~lLt~L~~ES~k~~~~~~s~~~~d~~~~~~~~~~~k~~~~~~l~~~k~~~ 273 (296)
T KOG3933|consen 223 LYLLTVLYHESGKTEKWDESKVPLDTEHYLFKSSAKKQKLEELLERSKLTE 273 (296)
T ss_pred HHHHHHHHHHhcccchhhhhccchhhHHHHHhcchhhccHHHHHHHhhccc
Confidence 9999999999987766 7899999876633 334466999999887
No 2
>PF10213 MRP-S28: Mitochondrial ribosomal subunit protein ; InterPro: IPR019349 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a conserved region of approx. 125 residues of one of the proteins that makes up the small subunit of the mitochondrial ribosome. In Saccharomyces cerevisiae (Baker's yeast) it is mitochondrial ribosomal protein S24 whereas in humans it is S35.
Probab=100.00 E-value=1.3e-36 Score=266.46 Aligned_cols=121 Identities=34% Similarity=0.467 Sum_probs=113.3
Q ss_pred CCCCCCCCCceEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhh
Q 014729 281 IDDPPGEGPILRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREEN 360 (419)
Q Consensus 281 PF~PP~~~~ILr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQN 360 (419)
||+||+++.+|+|+|++|+|.| ||.++||+|+|+|++|||+++|+|||++|||+|||+++|+|+|+|++|++++||
T Consensus 1 ~f~pp~~~~pl~~~~~~y~~~~----~p~~rkV~l~v~l~dL~L~~~a~~Kl~~LaG~Ryd~~~d~l~i~sdr~~~~~qN 76 (127)
T PF10213_consen 1 PFKPPSPEFPLRFRYTDYMGES----HPANRKVVLQVKLSDLGLSEKARHKLKLLAGPRYDPETDILKISSDRFPTRAQN 76 (127)
T ss_pred CCCCCCCCCCEEEEEEeecCCC----CCccCEEEEEEEHHhcCCCHHHHHHHHHHhhcccCCCCCEEEEecccCCCHHHH
Confidence 7999999999999999999655 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCC----CCCcccchhHHhhhc--CCchhHHHhh
Q 014729 361 RKDCLRTLFSLIEEAGKANK----MVDDARASYVKDRLR--ANPAFMERLR 405 (419)
Q Consensus 361 rkyl~d~L~~LI~EAk~~ek----iplDTRhtk~kkRkk--~~~~FPeeW~ 405 (419)
++||+++|++||.||++..+ +|+|+||++.+.+++ +++.||++|+
T Consensus 77 ~~~l~~~l~~L~~EA~~~~~~f~dvpld~rh~~~~~~~~~~~~~~fP~eW~ 127 (127)
T PF10213_consen 77 KKYLSDLLTRLIHEAKDLTDDFEDVPLDTRHEKAKWERKKKRNPEFPKEWK 127 (127)
T ss_pred HHHHHHHHHHHHHHHhhccCChhhCcCcchHHHHHHhcccccccCCCcccC
Confidence 99999999999999999433 899999999986643 5689999996
No 3
>PRK09256 hypothetical protein; Provisional
Probab=99.46 E-value=4.2e-13 Score=119.92 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=93.5
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|.|+|.-=-|||||++|+++++|.|+|++....|++.++.+|....+.|++. +|.|.|+|+.+++|.+|++.|++.|..
T Consensus 15 l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~-~g~l~i~~~~~RSQ~~Nr~~al~kL~~ 93 (138)
T PRK09256 15 LEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITK-DGVIVIKAQEFRSQERNREDALERLVA 93 (138)
T ss_pred eEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccC-CCcEEEEECCcCCHHHHHHHHHHHHHH
Confidence 6777766679999999999999999999987799999999999999999986 899999999999999999999999999
Q ss_pred HHHHHhccCCCCCcccchhHHhh
Q 014729 371 LIEEAGKANKMVDDARASYVKDR 393 (419)
Q Consensus 371 LI~EAk~~ekiplDTRhtk~kkR 393 (419)
+|.+|...++.+..+|+++..++
T Consensus 94 ~i~~~~~~p~~r~~tk~~~~~~~ 116 (138)
T PRK09256 94 LIREALKPPKKRRATKPTRGSKE 116 (138)
T ss_pred HHHHHhhccccccCCcccHHHHH
Confidence 99999998888888888876643
No 4
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=3.3e-09 Score=97.87 Aligned_cols=93 Identities=22% Similarity=0.366 Sum_probs=81.3
Q ss_pred CCCCc-eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCC-CCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHH
Q 014729 286 GEGPI-LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELG-LSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKD 363 (419)
Q Consensus 286 ~~~~I-Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~-Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrky 363 (419)
+-+.+ ++|.-.+ |||||++|++|+||.|+|+|+.-. |++.-+.+|+.---.|||. .|.|+|.|++-++|..|..+
T Consensus 38 pld~~~i~y~RSS--GPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink-~gelvI~Sd~TRsq~~NiaD 114 (172)
T KOG3429|consen 38 PLDQLEISYSRSS--GPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINK-DGELVIYSDKTRSQHKNIAD 114 (172)
T ss_pred chhheEEEEeecC--CCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhcc-CccEEEecchhHHhhccHHH
Confidence 34555 6655544 999999999999999999997664 8999999999988999997 77799999999999999999
Q ss_pred HHHHHHHHHHHHhccCCC
Q 014729 364 CLRTLFSLIEEAGKANKM 381 (419)
Q Consensus 364 l~d~L~~LI~EAk~~eki 381 (419)
|++-|..+|.+|-..+.+
T Consensus 115 cleKlr~~I~~~~~~~~~ 132 (172)
T KOG3429|consen 115 CLEKLRDIIRAAEQTPPV 132 (172)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 999999999999887764
No 5
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=98.13 E-value=4.4e-06 Score=72.19 Aligned_cols=61 Identities=23% Similarity=0.330 Sum_probs=55.1
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|.|++.-=-|||||++|+++++|.|++.+.. |+|+|+.+++|.+|+..|+..|..
T Consensus 14 l~~~~~RssGpGGQ~VNk~~s~V~l~h~ptg-------------------------i~v~~~~~Rsq~~Nr~~A~~~L~~ 68 (113)
T PF00472_consen 14 LEISFSRSSGPGGQNVNKTNSKVRLRHIPTG-------------------------IVVKCQESRSQHQNREDALEKLRE 68 (113)
T ss_dssp EEEEEEESSSSSSCHHHSSSEEEEEEETTTT-------------------------EEEEEESSSSHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCCCCCcccccCCEEEEEEeccc-------------------------EEEEEcccCCHHHHHHHHHHHHHH
Confidence 5666665669999999999999999998655 999999999999999999999999
Q ss_pred HHHHHh
Q 014729 371 LIEEAG 376 (419)
Q Consensus 371 LI~EAk 376 (419)
+|.++.
T Consensus 69 ~l~~~~ 74 (113)
T PF00472_consen 69 KLDEAY 74 (113)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999997
No 6
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00012 Score=71.52 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=81.7
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCC-CCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKEL-GLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLF 369 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL-~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~ 369 (419)
|++.+.==-|||||++|+.+++|.|++.+..+ .+.+..+..++.+.+.|... .+.|.|.+++++++++|+..+...+-
T Consensus 112 l~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~a~~~l-~~kL~~~~~~~Rsqe~n~~~a~~k~i 190 (239)
T COG1186 112 LRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKALARKML-KGKLYILAQEKRSQEKNRERALKKLI 190 (239)
T ss_pred eEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34443333499999999999999999999985 79999999999999999987 88899999999999999999999999
Q ss_pred HHHHHHhccCCCC-Ccccchh
Q 014729 370 SLIEEAGKANKMV-DDARASY 389 (419)
Q Consensus 370 ~LI~EAk~~ekip-lDTRhtk 389 (419)
.++..+......| -.+++++
T Consensus 191 ~wg~qirsyv~~p~~~vKd~R 211 (239)
T COG1186 191 GWGNQIRSYVLDPYQPTKDLR 211 (239)
T ss_pred HHHHhccccCCCccccccccc
Confidence 9999988766542 3444443
No 7
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=97.05 E-value=0.002 Score=61.48 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=51.5
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.-=-|||||++|+++++|.|+ ..| +| |+++|+..++|.+|++-|+.+|..
T Consensus 108 l~~~~~RssGpGGQ~vNkt~saVrl~-----------------------h~p-tg-i~v~~~~~RSQ~~Nk~~A~~~L~~ 162 (200)
T TIGR03072 108 IRFETLRSSGPGGQHVNKTESAVRAT-----------------------HLA-SG-ISVKVQSERSQHANKRLATLLLAV 162 (200)
T ss_pred eEEEEEECCCCCcccccccceeEEEE-----------------------ECC-Cc-EEEEECCccCHHHHHHHHHHHHHH
Confidence 56655555599999999999999997 122 44 699999999999999999999999
Q ss_pred HHHHHhc
Q 014729 371 LIEEAGK 377 (419)
Q Consensus 371 LI~EAk~ 377 (419)
+|.+-..
T Consensus 163 ~l~~~~~ 169 (200)
T TIGR03072 163 RLADLQQ 169 (200)
T ss_pred HHHHHHH
Confidence 9987653
No 8
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=96.80 E-value=0.0045 Score=59.12 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=52.5
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.---|||||++|+.+++|.|+- + | +|+ +++|+..++|-+|+..|+.+|..
T Consensus 109 l~~~~~RssGpGGQ~VNkt~saVrl~h-~----------------------p-tgi-~v~~~~~RSQ~~Nk~~A~~~L~~ 163 (200)
T PRK08179 109 IRFETLRSSGPGGQHVNKTDSAVRATH-L----------------------A-SGI-SVKVQSERSQHANKRLARLLIAW 163 (200)
T ss_pred eEEEEEEccCCcccccccccceEEEEE-c----------------------C-CcE-EEEECCCCCHHHHHHHHHHHHHH
Confidence 677766666999999999999999982 1 3 554 69999999999999999999999
Q ss_pred HHHHHhc
Q 014729 371 LIEEAGK 377 (419)
Q Consensus 371 LI~EAk~ 377 (419)
+|.+-..
T Consensus 164 ~L~~~~~ 170 (200)
T PRK08179 164 KLEQQQQ 170 (200)
T ss_pred HHHHHHH
Confidence 9987654
No 9
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=96.49 E-value=0.01 Score=61.11 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=52.6
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.-=-|||||++|+++++|-|+.. | +| |+++|+..++|.+|++-|+.+|..
T Consensus 223 l~~~~~RssG~GGQ~VNkt~saVrl~H~-----------------------p-tG-i~v~~~~eRSQ~~Nk~~Al~~L~~ 277 (359)
T PRK00591 223 LRIDTFRSSGAGGQHVNTTDSAVRITHL-----------------------P-TG-IVVECQDERSQHKNKAKAMKVLRA 277 (359)
T ss_pred EEEEEEECCCCCCCCccceeeeEEEEEC-----------------------C-Cc-EEEEECCcCCHHHHHHHHHHHHHH
Confidence 5666554469999999999999999751 2 46 679999999999999999999999
Q ss_pred HHHHHhcc
Q 014729 371 LIEEAGKA 378 (419)
Q Consensus 371 LI~EAk~~ 378 (419)
.|.+....
T Consensus 278 ~L~~~~~~ 285 (359)
T PRK00591 278 RLYDAERQ 285 (359)
T ss_pred HHHHHHHH
Confidence 99887653
No 10
>PRK07342 peptide chain release factor 2; Provisional
Probab=96.47 E-value=0.0092 Score=61.08 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=52.4
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.-=-|||||++|+.+++|.|+ + -| +| |+++|+..++|.+|++-|+.+|..
T Consensus 201 l~~~~~RssG~GGQ~VNkt~saVrl~-H----------------------~p-tg-i~v~~~~eRSQ~~Nk~~A~~~L~~ 255 (339)
T PRK07342 201 VRIDTYRSSGAGGQHVNTTDSAVRIT-H----------------------IP-TG-IVVQCQQERSQHKNRAKAWSMLRA 255 (339)
T ss_pred EEEEEEECCCCCCCCccceeeeEEEE-E----------------------cC-Cc-EEEEECCcccHHHHHHHHHHHHHH
Confidence 67666666789999999999999998 1 12 66 799999999999999999999999
Q ss_pred HHHHHhc
Q 014729 371 LIEEAGK 377 (419)
Q Consensus 371 LI~EAk~ 377 (419)
.|.+...
T Consensus 256 ~L~~~~~ 262 (339)
T PRK07342 256 RLYEEEL 262 (339)
T ss_pred HHHHHHH
Confidence 9886554
No 11
>PRK08787 peptide chain release factor 2; Provisional
Probab=96.46 E-value=0.0095 Score=60.44 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=50.4
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.-=-|||||++|+++++|.++ ++ | +| |+++|+..++|.+|+..|+.+|..
T Consensus 178 l~~~~~RssG~GGQ~VNkt~saVri~-H~----------------------P-tg-i~v~~q~eRSQ~~Nk~~A~~~L~~ 232 (313)
T PRK08787 178 LRTDVYRSSGAGGQHVNKTESAVRIT-HI----------------------P-TN-TVVACQTGRSQHQNRDNAMKMLAA 232 (313)
T ss_pred eEEEEEECCCCCCCCcCCEeeEEEEE-EC----------------------C-Cc-EEEEECCcccHHHHHHHHHHHHHH
Confidence 66665544699999999999999998 21 1 34 699999999999999999999999
Q ss_pred HHHHHh
Q 014729 371 LIEEAG 376 (419)
Q Consensus 371 LI~EAk 376 (419)
+|.+-.
T Consensus 233 ~L~~~~ 238 (313)
T PRK08787 233 KLYELE 238 (313)
T ss_pred HHHHHH
Confidence 987744
No 12
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=96.44 E-value=0.0097 Score=61.30 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=51.8
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.-=-|||||++|+++++|.|+- -| + .|+++|+..++|.+|+..|+.+|..
T Consensus 223 l~~~~~RssG~GGQ~VNkt~SaVrl~h-----------------------~p-t-gi~V~~~~eRSQ~~Nk~~A~~~L~~ 277 (360)
T TIGR00019 223 LRIDTFRSSGAGGQHVNTTDSAVRITH-----------------------LP-T-GIVVECQDERSQHKNKDKAMKVLRA 277 (360)
T ss_pred EEEEEEECCCCCCCCcCceeeeEEEEE-----------------------CC-C-cEEEEECCccCHHHHHHHHHHHHHH
Confidence 666665456999999999999999861 12 3 5789999999999999999999999
Q ss_pred HHHHHhc
Q 014729 371 LIEEAGK 377 (419)
Q Consensus 371 LI~EAk~ 377 (419)
.|.+...
T Consensus 278 ~L~~~~~ 284 (360)
T TIGR00019 278 RLYEAEQ 284 (360)
T ss_pred HHHHHHH
Confidence 9888774
No 13
>PRK06746 peptide chain release factor 2; Provisional
Probab=96.43 E-value=0.011 Score=60.24 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=53.0
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.-=-|||||++|+++++|.|+... ..|+++|+..++|.+|++-|+.+|..
T Consensus 199 l~~~~~rssG~GGQ~vNkt~saVrl~h~p-------------------------tgi~v~~q~~RSQ~~Nk~~A~~~L~a 253 (326)
T PRK06746 199 LKIDTYRASGAGGQHVNTTDSAVRITHTP-------------------------TNTVVTCQSERSQIKNREHAMKMLKA 253 (326)
T ss_pred eEEEEEeCCCCCCCCccceeeEEEEEEeC-------------------------CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 67776666689999999999999999842 36799999999999999999999998
Q ss_pred HHHHHhc
Q 014729 371 LIEEAGK 377 (419)
Q Consensus 371 LI~EAk~ 377 (419)
.|.+...
T Consensus 254 kL~~~~~ 260 (326)
T PRK06746 254 KLYQKKL 260 (326)
T ss_pred HHHHHHH
Confidence 8776553
No 14
>PRK05589 peptide chain release factor 2; Provisional
Probab=96.43 E-value=0.0096 Score=60.62 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=51.2
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.-=-|||||++|+.+++|.|+- -| +| |++.|+..++|.+|++.|+.+|..
T Consensus 198 l~~~~~rssG~GGQ~VNkt~saVrl~H-----------------------~p-tg-i~v~~q~eRSQ~~Nk~~A~~~L~~ 252 (325)
T PRK05589 198 LKIDTYRAGGAGGQHVNKTESAVRITH-----------------------IP-TG-IVVQCQNERSQHSNKETAMKMLKS 252 (325)
T ss_pred eEEEEeeCCCCCCCcccceeeEEEEEE-----------------------CC-CC-EEEEECCccCHHHHHHHHHHHHHH
Confidence 566655555999999999999999982 23 67 899999999999999999999998
Q ss_pred HHHHHh
Q 014729 371 LIEEAG 376 (419)
Q Consensus 371 LI~EAk 376 (419)
.|.+..
T Consensus 253 kL~~~~ 258 (325)
T PRK05589 253 KLVELK 258 (325)
T ss_pred HHHHHH
Confidence 887654
No 15
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=95.83 E-value=0.029 Score=58.02 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=51.3
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.-=-|||||++|+++++|.|+-. | +| |+++|+..++|.+|+..|+.+|..
T Consensus 237 l~~~~~rssGpGGQ~vNkt~saVrl~h~-----------------------p-tg-i~v~~~~~RSQ~~Nk~~A~~~L~~ 291 (367)
T PRK00578 237 LRIDTYRSSGAGGQHVNKTDSAVRITHI-----------------------P-TG-IVVQCQNERSQHQNKASAMKMLKA 291 (367)
T ss_pred EEEEEeeCCCCCCCcccceeeEEEEEEC-----------------------C-Cc-EEEEECCCCCHHHHHHHHHHHHHH
Confidence 6666655569999999999999998721 1 44 699999999999999999999999
Q ss_pred HHHHHhc
Q 014729 371 LIEEAGK 377 (419)
Q Consensus 371 LI~EAk~ 377 (419)
.|.+...
T Consensus 292 kL~~~~~ 298 (367)
T PRK00578 292 KLYELEL 298 (367)
T ss_pred HHHHHHH
Confidence 8877654
No 16
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=95.59 E-value=0.038 Score=57.09 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=50.9
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.-=-|||||++|+++++|.++ ++ | +| |+++|+..++|-+|+.-|+.+|..
T Consensus 237 ~~~~~~rssG~GGQ~VNkt~saVri~-H~----------------------p-tg-i~v~~q~~RSQ~~Nk~~A~~~L~~ 291 (364)
T TIGR00020 237 LRIDTYRASGAGGQHVNKTDSAVRIT-HI----------------------P-TG-IVVQCQNDRSQHKNKDSAMKVLKA 291 (364)
T ss_pred EEEEEeeCCCCCCccccccceEEEEE-EC----------------------C-Cc-EEEEECCccCHHHHHHHHHHHHHH
Confidence 56665544799999999999999987 21 2 45 699999999999999999999999
Q ss_pred HHHHHhc
Q 014729 371 LIEEAGK 377 (419)
Q Consensus 371 LI~EAk~ 377 (419)
.|.+...
T Consensus 292 kL~~~~~ 298 (364)
T TIGR00020 292 KLYELEM 298 (364)
T ss_pred HHHHHHH
Confidence 8877653
No 17
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=88.28 E-value=0.75 Score=48.23 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=61.6
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+..+.---|||||++|+.+++|.|.=- | || |++.|+.=++|.+|+.-|+.+|.+
T Consensus 250 l~i~~~R~~G~GGQhvNktdsaVrl~Hi-----------------------P-TG-Ivv~cq~eRSq~~Nr~~A~~~L~a 304 (386)
T KOG2726|consen 250 LRIETFRASGPGGQHVNKTDSAVRLTHI-----------------------P-TG-IVVECQEERSQHKNRALALKRLRA 304 (386)
T ss_pred eeEEecccCCCCcccccccccceEEEee-----------------------c-Cc-eEEEeecHHhHHhhHHHHHHHHHH
Confidence 5555555669999999999999987532 3 66 568999999999999999999999
Q ss_pred HHHHHhccCCCC--CcccchhH----HhhhcCCchhHH
Q 014729 371 LIEEAGKANKMV--DDARASYV----KDRLRANPAFME 402 (419)
Q Consensus 371 LI~EAk~~ekip--lDTRhtk~----kkRkk~~~~FPe 402 (419)
.+.+-......+ ...|.... +..+.+.+.|++
T Consensus 305 kL~~~~~~~~~~~~~~~r~~qv~s~~rsekiRTy~~~q 342 (386)
T KOG2726|consen 305 KLAVIYREEKSEEEKKKRKAQVGSLKRSEKIRTYNFKQ 342 (386)
T ss_pred HHHHHHHhhhhHHhhhhhHHhhcccCchhceeecccCc
Confidence 887776655522 23333222 223445666765
No 18
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=80.33 E-value=3.4 Score=43.06 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=49.6
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
||+.+.-=-|+|||++|...++|-++= -| || |+++|+.-++|-+|+.-++.+|.+
T Consensus 225 lrIDt~RsSGaGGQhVNtTdSAVRiTH-----------------------lP-TG-IvV~cQderSQ~kNk~kAmkvL~A 279 (363)
T COG0216 225 LRIDTFRSSGAGGQHVNTTDSAVRITH-----------------------LP-TG-IVVECQDERSQHKNKAKAMKVLRA 279 (363)
T ss_pred ceeeeeecCCCCCCCcCccchhheeee-----------------------cC-Cc-eEEEecchhhhhhhHHHHHHHHHH
Confidence 555554456899999999999986542 13 66 467999999999999999999998
Q ss_pred HHHHHhccC
Q 014729 371 LIEEAGKAN 379 (419)
Q Consensus 371 LI~EAk~~e 379 (419)
=|.++....
T Consensus 280 Rl~~~~~~~ 288 (363)
T COG0216 280 RLYDAERQK 288 (363)
T ss_pred HHHHHHHHH
Confidence 877766533
No 19
>PRK14136 recX recombination regulator RecX; Provisional
Probab=54.14 E-value=71 Score=33.08 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=64.0
Q ss_pred ccccCChHHHHHHHHhhhcCCCcchhHHHHHHHH--------------HHhhCCCCCCcHHHHHHHhcCCCCCccchhcc
Q 014729 75 DVEDVSNKELKMRIDKYFKGDEEALPSILEAILQ--------------RRLVGKHEETDDELTEELRLKPLDDVKDQEFE 140 (419)
Q Consensus 75 ~~~dv~n~elk~~~~~y~~gde~~lp~i~ea~l~--------------r~l~g~h~e~ddel~~~l~~~p~~~v~d~~fe 140 (419)
.--+-|..||++.|.++ .-++++|-.|++-+.+ +...++. ----|.-+|+.|.|+ +.-++
T Consensus 173 SrReRSe~ELr~KL~kk-G~~ee~IE~VIerLke~gYLDDeRFAesyVr~R~~kk--Gp~rIrqELrQKGId---~eLIE 246 (309)
T PRK14136 173 SRREYSRAELARKLAPY-ADESDSVEPLLDALEREGWLSDARFAESLVHRRASRV--GSARIVSELKRHAVG---DALVE 246 (309)
T ss_pred hcccccHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhch--hHHHHHHHHHHcCCC---HHHHH
Confidence 45677899999998875 3333444444443322 1112222 234577788888774 33344
Q ss_pred chhhhhhccchhhhhhhhhhhHhhhhccccccccCCchhhHHHHHHHHhcCcc
Q 014729 141 SDFEELYATDEEIDDLYSARDHVVKKMVKDEYFNMDDKKWDEMIGEAVQHGYL 193 (419)
Q Consensus 141 sdfe~~~~td~e~~dl~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~~ 193 (419)
.=.++. + .+++-+++..+.||+.. +.-+.+++..++.-++.+||-
T Consensus 247 qALeei-e----EDE~E~A~~L~eKK~~~---~~~d~kek~K~iRfL~rRGFS 291 (309)
T PRK14136 247 SVGAQL-R----ETEFERAQAVWRKKFGA---LPQTPAERAKQARFLAARGFS 291 (309)
T ss_pred HHHHhc-c----HhHHHHHHHHHHHHhcc---cCcCHHHHHHHHHHHHHCCCC
Confidence 333332 1 13455888999999864 233567788899999999993
No 20
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=49.78 E-value=18 Score=35.79 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=44.6
Q ss_pred CCceEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHH-HHHHHHHHhCCCCCCCCCeEEEEeCCC
Q 014729 288 GPILRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKY-QFRRLRELVGKRYHPGKDELTITSERF 354 (419)
Q Consensus 288 ~~ILr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~-qr~KLk~LAG~RYn~~tgiLkISsdrF 354 (419)
+.|+-..-..|. .++-.++.-|+|.|++..=|++.- -.+..+.-++.|| |.+..|+|.+.+|
T Consensus 91 G~V~~ISg~dyv----~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at~c 153 (240)
T KOG3170|consen 91 GEVFPISGPDYV----KEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPATTC 153 (240)
T ss_pred cceeeccchHHH----HHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEecccccc
Confidence 444433333444 477888999999999987766554 4556666678999 5699999999877
No 21
>COG3549 HigB Plasmid maintenance system killer protein [General function prediction only]
Probab=35.83 E-value=38 Score=29.61 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=30.6
Q ss_pred HHHHhhhcCCCc-chhHHHHHHHHHHhhCCCCCCcHHHH
Q 014729 86 MRIDKYFKGDEE-ALPSILEAILQRRLVGKHEETDDELT 123 (419)
Q Consensus 86 ~~~~~y~~gde~-~lp~i~ea~l~r~l~g~h~e~ddel~ 123 (419)
+.+++||.++-. .+|+=+|++|.|||.=++.-++++-|
T Consensus 8 k~le~f~~~~r~~~i~s~l~~~l~rkL~~i~aA~~~~dl 46 (94)
T COG3549 8 KWLERFFLDGRTRKIPSGLEKVLFRKLQMIDAAPNEEDL 46 (94)
T ss_pred hHHHHHHhcCccccCchHHHHHHHHHHHHHhccCCHHHh
Confidence 468899955544 89999999999999999877776544
No 22
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=32.71 E-value=56 Score=22.98 Aligned_cols=17 Identities=41% Similarity=0.745 Sum_probs=13.4
Q ss_pred chhhHHHHHHHHhcCcc
Q 014729 177 DKKWDEMIGEAVQHGYL 193 (419)
Q Consensus 177 ~~~~~~~~~~~~~~g~~ 193 (419)
|.-|-..|++|.+-|+.
T Consensus 2 D~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 2 DEEWVELIKEAKESGLS 18 (30)
T ss_dssp -HHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 67899999999999993
No 23
>KOG2830 consensus Protein phosphatase 2A-associated protein [Signal transduction mechanisms]
Probab=31.87 E-value=11 Score=38.93 Aligned_cols=31 Identities=42% Similarity=0.668 Sum_probs=27.6
Q ss_pred ccceeeeccCCCCCCCCCCCCCCCCchhhhhhhccCCCccccccCChHHHHHHHHhhhcC
Q 014729 35 RTQLRLYSSDSKDSSNDQRAPDPAPETALTAQTQKKDVSIDVEDVSNKELKMRIDKYFKG 94 (419)
Q Consensus 35 ~~~~~f~ss~~~dss~~~~~~~~~p~~~~~~~~~k~~~~~~~~dv~n~elk~~~~~y~~g 94 (419)
.+|+++|||++ +++|||...||=++=-||-|
T Consensus 49 ~~ql~lFSsNE-----------------------------~iedIsT~sLkyLlVpyflg 79 (324)
T KOG2830|consen 49 VNQLALFSSNE-----------------------------TIEDISTNSLKYLLVPYFLG 79 (324)
T ss_pred HHHHHhhcccc-----------------------------hhhhccccccchhhhHHHHH
Confidence 45778999999 79999999999999999976
No 24
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=30.13 E-value=32 Score=26.02 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=25.9
Q ss_pred ccccCChHHHHHHHHhhhcCCCcchhHHHHHHHHHHhh
Q 014729 75 DVEDVSNKELKMRIDKYFKGDEEALPSILEAILQRRLV 112 (419)
Q Consensus 75 ~~~dv~n~elk~~~~~y~~gde~~lp~i~ea~l~r~l~ 112 (419)
|+..+||.||++.+.+|=--. .-|=+-.-.|++|||.
T Consensus 2 d~~~LSd~eL~~~L~~~G~~~-gPIt~sTR~vy~kkL~ 38 (44)
T smart00540 2 DVDRLSDAELRAELKQYGLPP-GPITDTTRKLYEKKLR 38 (44)
T ss_pred chhHcCHHHHHHHHHHcCCCC-CCcCcchHHHHHHHHH
Confidence 588999999999999874222 2333455677777774
No 25
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=55 Score=36.01 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=48.6
Q ss_pred ccCCchhhHHHHHHHHhcCcccchhhHHHHhhhcccccccCCcchhhHHHHHHHHhhcccccccCchhHHHHHhhhhhh
Q 014729 173 FNMDDKKWDEMIGEAVQHGYLKDTRECEEILEDMLSWDKLLPDDMKKKVEQKFNELGDMCESGELEPEQAYELFKKFED 251 (419)
Q Consensus 173 ~n~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ed~~~~d~~~~Ddi~~~~~~~~~e~rd~~e~~rl~~e~ay~~~ka~E~ 251 (419)
.|.--..=|+.|++||-+=+ .|.|.|++..-|.+++|+..|+.+.. -|--|+-++.+.+|+.|-+
T Consensus 15 LNlpkdAt~eeI~~AYrr~~------------~lfHPDkh~dpd~K~~AE~~F~~i~~--AyEVLsDp~kRaIYD~~G~ 79 (546)
T KOG0718|consen 15 LNLPKDATDEEIKKAYRRLS------------RLFHPDKHTDPDQKKAAEEKFQRIQR--AYEVLSDPQKRAIYDNYGE 79 (546)
T ss_pred hCCCcccCHHHHHHHHHHHH------------HhcCCcccCChhHHHHHHHHHHHHHH--HHHHhcChHHHHHHHHhhh
Confidence 45555566889999998744 79999999999999999999998653 3445555666666665544
No 26
>COG5328 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.67 E-value=34 Score=31.75 Aligned_cols=40 Identities=35% Similarity=0.579 Sum_probs=32.7
Q ss_pred HHhhhcCCCcchhHHHHHH-HHHHhhCCCCCCcHHHHHHHhcC
Q 014729 88 IDKYFKGDEEALPSILEAI-LQRRLVGKHEETDDELTEELRLK 129 (419)
Q Consensus 88 ~~~y~~gde~~lp~i~ea~-l~r~l~g~h~e~ddel~~~l~~~ 129 (419)
-++||+.=-.+-|+-+||| |-|| |.|.|-.+-||+.|.+|
T Consensus 98 CeSYY~AIRsstPsqIEAiDMGRR--GlHNeGSqtL~dRL~GK 138 (160)
T COG5328 98 CESYYQAIRSSTPSQIEAIDMGRR--GLHNEGSQTLMDRLSGK 138 (160)
T ss_pred HHHHHHHHHhCCHhhhhHhhhccc--ccccccHHHHHHHhcCc
Confidence 3566666666889999999 5554 99999999999999886
No 27
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=25.09 E-value=43 Score=32.62 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=49.6
Q ss_pred cCcccchhhHHHHhhhccc---------ccccCCcchhhHHHHHHHHhhcccccccCchhHHHHHhhhh
Q 014729 190 HGYLKDTRECEEILEDMLS---------WDKLLPDDMKKKVEQKFNELGDMCESGELEPEQAYELFKKF 249 (419)
Q Consensus 190 ~g~~~~~~~~~~~~ed~~~---------~d~~~~Ddi~~~~~~~~~e~rd~~e~~rl~~e~ay~~~ka~ 249 (419)
-++|..+||+-.+|+.++. -..+..++|...++--+.++-..||.|-++ .+|.-|.++
T Consensus 58 ~~~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe--~~~~~f~~l 124 (255)
T PF10350_consen 58 SCCWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFE--SVYPGFTAL 124 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHH--HHHHHHHHH
Confidence 4789999999999999883 466778999999999999999999999865 788877664
No 28
>KOG3281 consensus Mitochondrial F1-ATPase assembly protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.37 E-value=79 Score=32.17 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=39.0
Q ss_pred hhccCCCcc-c---cccCChHHHHHHHHhhhcCCCcchhHHHHHHHHHHhhCCCCCCcHHHHHHHhcCCC
Q 014729 66 QTQKKDVSI-D---VEDVSNKELKMRIDKYFKGDEEALPSILEAILQRRLVGKHEETDDELTEELRLKPL 131 (419)
Q Consensus 66 ~~~k~~~~~-~---~~dv~n~elk~~~~~y~~gde~~lp~i~ea~l~r~l~g~h~e~ddel~~~l~~~p~ 131 (419)
..+|..+|| | ++|.|.+|++..-..|+.|+|. |-++ ++-|-=|.+|..-|+.|+
T Consensus 97 ~~~K~L~simdve~iKeks~eEi~qiW~~~~a~kdt-l~Av-----------ip~e~yd~mmsrAr~~P~ 154 (273)
T KOG3281|consen 97 SPLKTLDSIMDVEKIKEKSAEEIEQIWRARNAGKDT-LSAV-----------IPKEIYDKMMSRARMYPY 154 (273)
T ss_pred CCCccHHHHHhHHHHcccCHHHHHHHHHHHhccccc-eeee-----------ccHHHHHHHHHHhhcCCe
Confidence 456777887 4 7899999999999999999984 2222 123335667777788776
No 29
>PRK02853 hypothetical protein; Provisional
Probab=23.50 E-value=38 Score=32.11 Aligned_cols=41 Identities=39% Similarity=0.563 Sum_probs=34.1
Q ss_pred HHHhhhcCCCcchhHHHHHH-HHHHhhCCCCCCcHHHHHHHhcC
Q 014729 87 RIDKYFKGDEEALPSILEAI-LQRRLVGKHEETDDELTEELRLK 129 (419)
Q Consensus 87 ~~~~y~~gde~~lp~i~ea~-l~r~l~g~h~e~ddel~~~l~~~ 129 (419)
-.++||+-=-.+-|+-+||| |-|| |.|.|.-.=|+|.|.+|
T Consensus 98 ICeSYy~Air~a~p~qIEaIDMgRR--GiHNEgs~lL~eRL~GK 139 (161)
T PRK02853 98 ICESYYQAIRTATPSQIEAIDMGRR--GLHNEGSELLQERLEGK 139 (161)
T ss_pred HHHHHHHHHHhCCHhHhhhhhhhcc--ccchHHHHHHHHHHcCC
Confidence 34677766667889999999 7776 99999999999999987
No 30
>PRK10738 hypothetical protein; Provisional
Probab=22.57 E-value=1.7e+02 Score=26.14 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=32.4
Q ss_pred CCCCCC-CeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCC
Q 014729 305 AWHPKN-RKVKMSVTVKELGLSKYQFRRLRELVGKRYHP 342 (419)
Q Consensus 305 e~HP~n-rKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~ 342 (419)
+.||.- +++++.+.+..-+|++++..|+..|+=.+|.+
T Consensus 76 ~~~p~~f~~I~~~~~~~g~~l~~e~~~rav~ls~~kyC~ 114 (134)
T PRK10738 76 EEAPRLFTHINLHFIVTGKDLKDAAVARAVDLSAEKYCS 114 (134)
T ss_pred ccCCCcccEEEEEEEEECCCCCHHHHHHHHHHHHccCCc
Confidence 456654 78999999987789999999999998888888
No 31
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=22.28 E-value=79 Score=27.56 Aligned_cols=75 Identities=13% Similarity=0.246 Sum_probs=50.8
Q ss_pred hhhhhhhhhhhhhcCCCCCCCCCCCccccccccceeeeccCCCCCCCCCCCCCCCCchhhhhhhccCCCccccccCChHH
Q 014729 4 TLLRNASLISRNLLHNPNHNQPFIPPLAASTRTQLRLYSSDSKDSSNDQRAPDPAPETALTAQTQKKDVSIDVEDVSNKE 83 (419)
Q Consensus 4 ~l~rn~s~~~r~ll~~~~~~~~~~~~~~~~~~~~~~f~ss~~~dss~~~~~~~~~p~~~~~~~~~k~~~~~~~~dv~n~e 83 (419)
.|.|-+.|.+|+=..= .|.+..+.-.|..||+-+...++ +. =.....|..|-.+-+.|.|++.++
T Consensus 21 VL~RIaglFsRRgyNI---eSLtvg~te~~~iSRmtivv~~~-~~-----------i~Qi~kQL~KLidVikV~~l~~~~ 85 (96)
T PRK08178 21 VMSHVCGLFARRAFNV---EGILCLPIQDGDKSRIWLLVNDD-QR-----------LEQMISQIEKLEDVLKVRRNQSDP 85 (96)
T ss_pred HHHHHHHHHhcCCcCe---eeEEEeecCCCCceEEEEEEcCc-hH-----------HHHHHHHHhCCcCEEEEEECCCch
Confidence 5778888888875332 45555667778888887655422 11 233557888888878899999988
Q ss_pred H-HHHHHhhhc
Q 014729 84 L-KMRIDKYFK 93 (419)
Q Consensus 84 l-k~~~~~y~~ 93 (419)
+ -..|++||+
T Consensus 86 ~v~~e~~~~~~ 96 (96)
T PRK08178 86 TMFNKIAVFFQ 96 (96)
T ss_pred hHHHHHHHHhC
Confidence 7 445777763
No 32
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=21.85 E-value=57 Score=31.09 Aligned_cols=32 Identities=31% Similarity=0.641 Sum_probs=22.0
Q ss_pred hhhccCCCccccccCChHHHHHHHHhhhcCCC
Q 014729 65 AQTQKKDVSIDVEDVSNKELKMRIDKYFKGDE 96 (419)
Q Consensus 65 ~~~~k~~~~~~~~dv~n~elk~~~~~y~~gde 96 (419)
.|.++.-+++--.-++|+.|+.++|+|.+|+.
T Consensus 126 eq~Kr~sl~vA~Silnnk~Ik~~le~ylKGen 157 (165)
T PF04988_consen 126 EQSKRSSLSVARSILNNKHIKKRLEKYLKGEN 157 (165)
T ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHhcCCC
Confidence 34444333332345799999999999999975
Done!