Query 014729
Match_columns 419
No_of_seqs 144 out of 245
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dh9_Y YAEJ; ribosome, YAEJ, r 99.6 2.2E-15 7.6E-20 133.5 6.3 102 291-393 15-116 (140)
2 2jva_A Peptidyl-tRNA hydrolase 99.5 4.8E-14 1.7E-18 120.3 11.0 88 291-379 15-102 (108)
3 1j26_A Immature colon carcinom 99.5 7.9E-13 2.7E-17 113.4 13.3 88 291-379 22-110 (112)
4 2rsm_A Probable peptide chain 97.7 0.00011 3.7E-09 63.7 7.7 63 291-378 48-110 (115)
5 2b3t_B RF-1, peptide chain rel 97.2 0.00031 1.1E-08 70.6 6.0 65 291-380 222-286 (360)
6 1rq0_A RF-1, peptide chain rel 97.2 0.00045 1.5E-08 69.1 6.4 64 291-379 198-261 (342)
7 1zbt_A RF-1, peptide chain rel 97.1 0.00099 3.4E-08 67.3 8.3 63 291-378 235-297 (371)
8 2ihr_1 Peptide chain release f 96.8 0.0025 8.7E-08 64.2 8.0 62 291-377 227-288 (365)
9 1gqe_A Release factor 2, RF2; 96.7 0.003 1E-07 63.7 7.6 62 291-377 239-300 (365)
10 3d5a_X RF1, peptide chain rele 96.6 0.0014 4.8E-08 65.8 4.8 64 291-379 217-280 (354)
11 2ahq_A Sigma-54, RNA polymeras 43.4 26 0.0009 27.9 4.2 40 76-131 13-52 (76)
12 1q1v_A DEK protein; winged-hel 31.8 75 0.0026 24.8 5.1 54 62-115 16-70 (70)
13 1gjj_A LAP2; inner nuclear mem 25.1 8.3 0.00028 35.3 -1.7 19 74-92 110-128 (168)
14 3rw6_A Nuclear RNA export fact 22.7 43 0.0015 31.5 2.6 48 303-350 82-135 (267)
15 2rnn_A E3 SUMO-protein ligase 20.4 1.6E+02 0.0054 25.3 5.4 49 80-128 59-113 (114)
No 1
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.56 E-value=2.2e-15 Score=133.48 Aligned_cols=102 Identities=17% Similarity=0.267 Sum_probs=93.6
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.-=-|||||++|+++++|.|+|+|.++.|++.++.+|+.+.|.|++. +|.|+|+|+.+++|.+|++.|+.+|..
T Consensus 15 l~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~-~G~ivv~~q~~RSQ~~Nr~~A~~rL~~ 93 (140)
T 4dh9_Y 15 LEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISS-DGVIVIKAQEYRSQELNREAALARLVA 93 (140)
T ss_dssp SEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCS-SCCCCEEECCCSSHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhcccccc-CCcEEEEEcCCcCHHHHHHHHHHHHHH
Confidence 5666655569999999999999999999999899999999999999999997 799999999999999999999999999
Q ss_pred HHHHHhccCCCCCcccchhHHhh
Q 014729 371 LIEEAGKANKMVDDARASYVKDR 393 (419)
Q Consensus 371 LI~EAk~~ekiplDTRhtk~kkR 393 (419)
+|.+|...++.+..||+++..++
T Consensus 94 ~l~~a~~~pk~R~~tkpt~~s~~ 116 (140)
T 4dh9_Y 94 MIKELTTEKKARRPTRPTRASKE 116 (140)
T ss_dssp HHHHHHSCCCCCCCCCCSSTTTH
T ss_pred HHHHhccCCCCCcCCCCcHHHHH
Confidence 99999999998999999876543
No 2
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.52 E-value=4.8e-14 Score=120.25 Aligned_cols=88 Identities=19% Similarity=0.314 Sum_probs=82.1
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|++.-=-|||||++|+++++|.|+|++.+..|++.++.+|+.+.|.|+++ +|+|+|+|+.+++|.+|++.|+++|..
T Consensus 15 l~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~-~G~ivv~~q~~RSQ~~Nr~~Al~rL~~ 93 (108)
T 2jva_A 15 IELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITS-DGVIVLKAQQYRTQEQNRADALLRLSE 93 (108)
T ss_dssp EEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCT-TCEEEEEECCSSSHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhcccccc-CCcEEEEECCcCCHHHHHHHHHHHHHH
Confidence 6666655669999999999999999999998899999999999999999998 999999999999999999999999999
Q ss_pred HHHHHhccC
Q 014729 371 LIEEAGKAN 379 (419)
Q Consensus 371 LI~EAk~~e 379 (419)
+|.+|...+
T Consensus 94 ~l~~a~~~~ 102 (108)
T 2jva_A 94 LIVNAAKLE 102 (108)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHccCc
Confidence 999998754
No 3
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.45 E-value=7.9e-13 Score=113.41 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=80.4
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCC-CCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKEL-GLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLF 369 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL-~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~ 369 (419)
|+|++.-=-|||||++|+++++|.|+|++... .|++.++.+|+.+.+.|++. +|+|+|+|+.+++|.+|++.|+++|.
T Consensus 22 l~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~-~G~ivv~~q~~RSQ~~Nr~~Al~rL~ 100 (112)
T 1j26_A 22 LSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINK-AGELVLTSESSRYQFRNLAECLQKIR 100 (112)
T ss_dssp SEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCS-SSEEEEEECCCSSHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhcccccc-CCeEEEEECCccCHHHHHHHHHHHHH
Confidence 56665555699999999999999999999775 89999999999999999997 99999999999999999999999999
Q ss_pred HHHHHHhccC
Q 014729 370 SLIEEAGKAN 379 (419)
Q Consensus 370 ~LI~EAk~~e 379 (419)
.+|.+|...+
T Consensus 101 ~~l~~a~~~p 110 (112)
T 1j26_A 101 DMIAEASGPS 110 (112)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHhhcCC
Confidence 9999997654
No 4
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=97.66 E-value=0.00011 Score=63.70 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=53.0
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|++.+.-=-|+|||++|+.+++|.|+. -| +| |+++|+.+++|.+|++.|+.+|..
T Consensus 48 l~~~~~RssGpGGQ~VNKt~SaVrl~H-----------------------~P-TG-ivV~~q~~RSQ~~Nr~~A~~~L~~ 102 (115)
T 2rsm_A 48 LEEQFVKGHGPGGQATNKTSNCVVLKH-----------------------VP-SG-IVVKCHQTRSVDQNRKIARKVLQE 102 (115)
T ss_dssp CEEEECSCCCSCSSSCCCSCCCEEEEC-----------------------TT-TC-CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred eEEEEeeCCCCCccccCccceeEEEec-----------------------CC-CC-cEEEEcCCCCHHHHHHHHHHHHHH
Confidence 777776667999999999999999872 23 56 568999999999999999999999
Q ss_pred HHHHHhcc
Q 014729 371 LIEEAGKA 378 (419)
Q Consensus 371 LI~EAk~~ 378 (419)
.|.+....
T Consensus 103 kL~e~~~~ 110 (115)
T 2rsm_A 103 KVDVFYNS 110 (115)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcc
Confidence 88876543
No 5
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=97.23 E-value=0.00031 Score=70.59 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=55.3
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|++.+.-=-|||||++|+++++|.|++ | | +| |+++|+..++|.+|+..|+.+|..
T Consensus 222 l~i~~~RssG~GGQ~VNkt~saVrl~h------l-----------------P-tG-ivv~~q~~RSQ~~Nr~~A~~~L~~ 276 (360)
T 2b3t_B 222 LRIDTFRSSGAGGQHVNTTDSAIRITH------L-----------------P-TG-IVVECQDERSQHKNKAKALSVLGA 276 (360)
T ss_dssp EEEEECCSSCCCTTTCCCSSEEEEEEE------T-----------------T-TC-CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEeeecCCCCCCCccccccceEEEEE------C-----------------C-Ce-EEEEECCCCCHHHHHHHHHHHHHH
Confidence 666654445899999999999999998 1 2 66 899999999999999999999999
Q ss_pred HHHHHhccCC
Q 014729 371 LIEEAGKANK 380 (419)
Q Consensus 371 LI~EAk~~ek 380 (419)
+|.++.....
T Consensus 277 ~L~~~~~~~~ 286 (360)
T 2b3t_B 277 RIHAAEMAKR 286 (360)
T ss_dssp HHTTTTTTSC
T ss_pred HHHHHHHHHH
Confidence 9999876444
No 6
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=97.18 E-value=0.00045 Score=69.06 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=50.4
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|++.+.-=-|||||++|+++++|.|+. | | +| |+++|+..++|.+|+..|+.+|..
T Consensus 198 l~i~~~RssGpGGQ~VNKt~SaVrl~h------l-----------------P-tG-ivv~~q~~RSQ~~Nr~~A~~~L~~ 252 (342)
T 1rq0_A 198 LKIETFRASGHGGQYVNKTESAVRITH------L-----------------P-TG-IVVSCQNERSQYQNKQTALRILRA 252 (342)
T ss_dssp EEEEEECCCC----CCSSSSEEEEEEE------T-----------------T-TC-CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCCcccccccceEEEEE------C-----------------C-Ce-EEEEECCCCCHHHHHHHHHHHHHH
Confidence 676655556899999999999999993 1 2 46 899999999999999999999999
Q ss_pred HHHHHhccC
Q 014729 371 LIEEAGKAN 379 (419)
Q Consensus 371 LI~EAk~~e 379 (419)
+|.++....
T Consensus 253 ~L~~~~~~~ 261 (342)
T 1rq0_A 253 RLYQLQKEQ 261 (342)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887543
No 7
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=97.12 E-value=0.00099 Score=67.28 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=45.0
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|++.+.-=-|||||++|+++++|.|++ | | +| |+++|+..++|.+|+..|+.+|..
T Consensus 235 l~i~~~RssGpGGQ~VNkt~SaVrlth------l-----------------P-tG-ivV~~q~eRSQ~~Nr~~A~~~L~~ 289 (371)
T 1zbt_A 235 LRVDIYHASGAGGQNVNKVATAVRIIH------L-----------------P-TN-IKVEMQEERTQQKNRDKAMKIIRA 289 (371)
T ss_dssp EEEEEECC---------CCCCEEEEEE------T-----------------T-TT-EEEEECSSSSHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCCcccccceeEEEEE------C-----------------C-Ce-EEEEECCcCCHHHHHHHHHHHHHH
Confidence 666655445899999999999999997 1 1 34 799999999999999999999999
Q ss_pred HHHHHhcc
Q 014729 371 LIEEAGKA 378 (419)
Q Consensus 371 LI~EAk~~ 378 (419)
+|.++...
T Consensus 290 ~L~~~~~~ 297 (371)
T 1zbt_A 290 RVADHFAQ 297 (371)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888743
No 8
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=96.79 E-value=0.0025 Score=64.18 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=52.4
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|++.+.-=-|||||++|+++++|.|+.- | +| |+++|+..++|.+|+.-|+.+|..
T Consensus 227 l~i~~~RssG~GGQ~VNkt~saVrl~h~-----------------------P-tg-ivv~~q~~RSQ~~Nr~~A~~~L~~ 281 (365)
T 2ihr_1 227 LRIDVMRASGPGGQGVNTTDSAVRVVHL-----------------------P-TG-ITVTCQTTRSQIKNKELALKILKA 281 (365)
T ss_dssp EEEEEECCCCSSCCSGGGSCSEEEEEET-----------------------T-TT-EEEEECSSSCHHHHHHHHHHHHHH
T ss_pred eEEEEeecCCCCCceecccceEEEEEEc-----------------------C-Ce-EEEEECCCCCHHHHHHHHHHHHHH
Confidence 6666555568999999999999999871 2 44 699999999999999999999999
Q ss_pred HHHHHhc
Q 014729 371 LIEEAGK 377 (419)
Q Consensus 371 LI~EAk~ 377 (419)
.|.+...
T Consensus 282 ~L~~~~~ 288 (365)
T 2ihr_1 282 RLYELER 288 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888654
No 9
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=96.69 E-value=0.003 Score=63.66 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=52.2
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|++.+.-=-|||||++|+++++|.|+. | | +| |+++|+..++|.+|+.-|+.+|..
T Consensus 239 l~~~~~RssG~GGQ~VNkt~saVrl~H------i-----------------P-tg-ivv~~q~~RSQ~~Nr~~A~~~L~~ 293 (365)
T 1gqe_A 239 LRIDVYRASGAGGQHVNRTESAVRITH------I-----------------P-TG-IVTQCQNDRSQHKNKDQAMKQMKA 293 (365)
T ss_dssp EEEEEECCCCSSCCSTTSSCCEEEEEE------T-----------------T-TC-CEEEECSSSCHHHHHHHHHHHHHH
T ss_pred ceEeeecCCCCCCCcccCccceEEEEE------C-----------------C-Ce-EEEEECCCCCHHHHHHHHHHHHHH
Confidence 666655445899999999999999994 1 2 45 699999999999999999999999
Q ss_pred HHHHHhc
Q 014729 371 LIEEAGK 377 (419)
Q Consensus 371 LI~EAk~ 377 (419)
.|.+...
T Consensus 294 ~L~~~~~ 300 (365)
T 1gqe_A 294 KLYEVEM 300 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
No 10
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=96.64 E-value=0.0014 Score=65.83 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=53.4
Q ss_pred eEEEEEEEecCCCCCCCCCCCeEEEEEEcCCCCCCHHHHHHHHHHhCCCCCCCCCeEEEEeCCCCCHHhhHHHHHHHHHH
Q 014729 291 LRWVTRAVFAPGGDAWHPKNRKVKMSVTVKELGLSKYQFRRLRELVGKRYHPGKDELTITSERFEHREENRKDCLRTLFS 370 (419)
Q Consensus 291 Lr~~t~~Y~gaGgqe~HP~nrKVvL~V~VsdL~Lsd~qr~KLk~LAG~RYn~~tgiLkISsdrFptreQNrkyl~d~L~~ 370 (419)
|+|.+.-=-|||||++|+++++|.|+. + | +| |+++|+..++|.+|+..|+.+|..
T Consensus 217 l~i~~~RssG~GGQ~VNkt~SaVrl~H-l----------------------P-tg-ivv~~q~~RSQ~~Nr~~A~~~L~~ 271 (354)
T 3d5a_X 217 IRIDVMRASGPGGQGVNTTDSAVRVVH-L----------------------P-TG-IMVTCQDSRSQIKNREKALMILRS 271 (354)
T ss_dssp EEEEEECCCSCCHHHHHHCCCEEEEEE-T----------------------T-TT-EEEEECCSSCHHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCCcccccccceEEEEE-c----------------------C-Ce-EEEEECCCCCHHHHHHHHHHHHHH
Confidence 677655555899999999999999983 1 2 45 679999999999999999999999
Q ss_pred HHHHHhccC
Q 014729 371 LIEEAGKAN 379 (419)
Q Consensus 371 LI~EAk~~e 379 (419)
+|.++....
T Consensus 272 ~L~~~~~~~ 280 (354)
T 3d5a_X 272 RLLEMKRAE 280 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887543
No 11
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=43.39 E-value=26 Score=27.91 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=29.8
Q ss_pred cccCChHHHHHHHHhhhcCCCcchhHHHHHHHHHHhhCCCCCCcHHHHHHHhcCCC
Q 014729 76 VEDVSNKELKMRIDKYFKGDEEALPSILEAILQRRLVGKHEETDDELTEELRLKPL 131 (419)
Q Consensus 76 ~~dv~n~elk~~~~~y~~gde~~lp~i~ea~l~r~l~g~h~e~ddel~~~l~~~p~ 131 (419)
-+++|++.+|.+|....++.+-.=| =+|+.|.+.|..+++
T Consensus 13 g~~~S~~~Ik~~Ik~lI~~Ed~~kP----------------lSD~~I~~~L~~~Gi 52 (76)
T 2ahq_A 13 AEGLTQGELMKLIKEIVENEDKRKP----------------YSDQEIANILKEKGF 52 (76)
T ss_dssp CCSCCHHHHHHHHHHHGGGCCSSSC----------------CCHHHHHHHHTTTSS
T ss_pred CccccHHHHHHHHHHHHHhcCCCCC----------------CCHHHHHHHHHHcCC
Confidence 3578999999999999876654433 268888888877654
No 12
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=31.85 E-value=75 Score=24.76 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=38.8
Q ss_pred hhhhhhccCCCccccccCChHHHHHHHHhhh-cCCCcchhHHHHHHHHHHhhCCC
Q 014729 62 ALTAQTQKKDVSIDVEDVSNKELKMRIDKYF-KGDEEALPSILEAILQRRLVGKH 115 (419)
Q Consensus 62 ~~~~~~~k~~~~~~~~dv~n~elk~~~~~y~-~gde~~lp~i~ea~l~r~l~g~h 115 (419)
.+.+-.+.=....|+.-||.+.+++.++.-| .-|=..==..+.+++...|+|-|
T Consensus 16 ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L~~~~ 70 (70)
T 1q1v_A 16 ELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKELISLEH 70 (70)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHhccC
Confidence 3444444444445789999999999999999 66655555666777777788876
No 13
>1gjj_A LAP2; inner nuclear membrane protein, lamin-associated polypeptide, LEM domain, multidimensional dipolar couplings; NMR {Homo sapiens} SCOP: a.140.1.1 a.140.1.1 PDB: 1h9e_A 1h9f_A
Probab=25.07 E-value=8.3 Score=35.28 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.4
Q ss_pred cccccCChHHHHHHHHhhh
Q 014729 74 IDVEDVSNKELKMRIDKYF 92 (419)
Q Consensus 74 ~~~~dv~n~elk~~~~~y~ 92 (419)
+||.++|++||+..+.+|=
T Consensus 110 ~Dv~~LSDeELr~~L~kyG 128 (168)
T 1gjj_A 110 LDVTELTNEDLLDQLVKYG 128 (168)
T ss_dssp -CCEEECHHHHHHEEEBTT
T ss_pred cCHHHcCHHHHHHHHHHhC
Confidence 5899999999999998774
No 14
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=22.71 E-value=43 Score=31.51 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=40.4
Q ss_pred CCCCCCCCCeEEEEEEcCCC------CCCHHHHHHHHHHhCCCCCCCCCeEEEE
Q 014729 303 GDAWHPKNRKVKMSVTVKEL------GLSKYQFRRLRELVGKRYHPGKDELTIT 350 (419)
Q Consensus 303 gqe~HP~nrKVvL~V~VsdL------~Lsd~qr~KLk~LAG~RYn~~tgiLkIS 350 (419)
|-..++.+.||++.|..+.. .|++.+..+|+.....|||+.++.+-++
T Consensus 82 g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs 135 (267)
T 3rw6_A 82 YKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLK 135 (267)
T ss_dssp SSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECT
T ss_pred cEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHH
Confidence 34556778899888887753 4899999999999999999999999986
No 15
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=20.36 E-value=1.6e+02 Score=25.32 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=33.7
Q ss_pred ChHHHHHHHHhhhcCCCc------chhHHHHHHHHHHhhCCCCCCcHHHHHHHhc
Q 014729 80 SNKELKMRIDKYFKGDEE------ALPSILEAILQRRLVGKHEETDDELTEELRL 128 (419)
Q Consensus 80 ~n~elk~~~~~y~~gde~------~lp~i~ea~l~r~l~g~h~e~ddel~~~l~~ 128 (419)
...||-.||+.||+|... ..+.-+-+++.+...|-+.-+=+.|...||.
T Consensus 59 kKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g~plP~~~~l~~alrt 113 (114)
T 2rnn_A 59 RKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKNEPLPVYKDLWNALRK 113 (114)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhc
Confidence 367888999999954433 2333333466666678888888888887763
Done!