BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014730
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D G+T + A +G+L+ ++VLLK D+ N +D DGY P+H AA GH + + LL+
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 128 ATNGVDI 134
A G D+
Sbjct: 102 A--GADV 106
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D G+T + A +G+L+ ++VLLK D+ N +D DGY P+H AA GH + + LL+
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 128 ATNGVDI 134
A G D+
Sbjct: 135 A--GADV 139
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
++ A G +++L+ D+ N +D DGY P+H AA GH + + LL+A G D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA--GADV 73
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D G+T + A +G+L+ ++VLLK D+ N +D DGY P+H AA GH + + LL+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 128 ATNGVDI 134
A G D+
Sbjct: 90 A--GADV 94
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D G+T + A +G+L+ ++VLLK D+ N +D DGY P+H AA GH + + LL+
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 128 ATNGVDI 134
A G D+
Sbjct: 123 A--GADV 127
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
++ A G +++L+ D+ N +D DGY P+H AA GH + + LL+A G D+
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA--GADV 61
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D G+T + A +G+L+ ++VLLK D+ N +D DGY P+H AA GH + + LL+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 128 ATNGVDI 134
A G D+
Sbjct: 90 A--GADV 94
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D G+T + A +G+L+ ++VLLK D+ N +D DGY P+H AA GH + + LL+
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 128 ATNGVDI 134
A G D+
Sbjct: 123 A--GADV 127
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
++ A G +++L+ D+ N +D DGY P+H AA GH + + LL+A G D+
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA--GADV 61
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
DN G T + A G+L+ ++VLLK+ D+ + D GY P+H AAY+GH + + LL+
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLK- 101
Query: 129 TNGVDIYRGNDGAMVLLFLIA 149
NG D+ + M L L A
Sbjct: 102 -NGADVNAMDSDGMTPLHLAA 121
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVD 133
++ A G +++L+ D+ N D+ G P+H AAY GH + + LL+ VD
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
DN+G T + A G+L+ ++VLLK+ D+ N +D +G+ P+H AAY GH + + LL+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
GHT + A G+L+ ++VLLKY D+ N D+ G P+H AA GH + + LL+ +G
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEVLLK--HG 103
Query: 132 VDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRD 169
D+ + L L A YD L+++++ G D
Sbjct: 104 ADVNAKDYEGFTPLHLAA---YDGHLEIVEVLLKYGAD 138
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 67 RQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
R G TA+ AAKG + LK+L++ D+ NI+D DG+ P+H AA++G ++ + L+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 127 E 127
E
Sbjct: 253 E 253
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLL 126
G TA+ N+ +K L++ ++ N D++G++P+H AA G+ D +YL+
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLI 126
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D+ G T + A KG+L+ ++VLLK+ D+ N D G P+H AA YGH + + LL+
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 128 ATNGVDI 134
NG D+
Sbjct: 102 --NGADV 106
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
D G T + A G+L+ ++VLLK D+ N D+ G+ P+H AA GH + + LL+
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLLK 134
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D +G T + A G+L+ +K+LL+ D+ N +D +G P+H AA GH + + LLE
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 128 ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKL 162
A G D+ + L L A N + L+++KL
Sbjct: 90 A--GADVNAKDKNGRTPLHLAARNGH---LEVVKL 119
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 71 HGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATN 130
+G T + A G+L+ +K+LL+ D+ N +D +G P+H AA GH + + LLEA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 131 GVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRD 169
G D+ + L L A N + L+++KL G D
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGH---LEVVKLLLEAGAD 93
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D +G T + A G+L+ +K+LL+ D+ N +D +G P+H AA GH + + LLE
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 128 A 128
A
Sbjct: 123 A 123
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D+ G T + A G+ + +K+LL D N +DSDG P+H AA GHK+ + LL
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLL-- 90
Query: 129 TNGVDIYRGNDGAMVLLFLIAANLYDVALDLL 160
+ G D + L L A N + + LL
Sbjct: 91 SQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 30 SKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALK 89
KT H AE + E LL L+ DP +D+ G T + A G+ + +K
Sbjct: 37 GKTPLHLAAE----NGHKEVVKLL--LSQGADPNA---KDSDGKTPLHLAAENGHKEVVK 87
Query: 90 VLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVD 133
+LL D N +DSDG P+H AA GHK+ + LL + G D
Sbjct: 88 LLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLL--SQGAD 128
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
G T + AA G+L+ ++VLLK+ D+ N D+DG+ P+H AA YGH + + LL+ +G
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK--HG 136
Query: 132 VDI 134
D+
Sbjct: 137 ADV 139
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
DN G+T + A+ G+L+ ++VLLK D+ N D G P+H AA GH + + LL+
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 129 TNGVDIYRGNDG 140
V+ Y NDG
Sbjct: 103 GADVNAYD-NDG 113
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY 135
++ A G +++L+ D+ N D+DGY P+H AA GH + + LL+ NG D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLK--NGADVN 74
Query: 136 RGNDGAMVLLFLIAA 150
+ + L L AA
Sbjct: 75 ASDLTGITPLHLAAA 89
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D++G T + AA G L+ ++VLLK D+ N DS G P+H AAY GH + + LL+
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 129 TNGVDIY 135
V+ Y
Sbjct: 95 GADVNAY 101
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D+ G T + A G+ + +K+L+ D+ N +DSDG P+H+AA GHK+ + L+
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLI-- 90
Query: 129 TNGVDIYRGNDGAMVLLFLIAANLYDVALDLL 160
+ G D+ + L A N + + LL
Sbjct: 91 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D+ G T + A G+ + +K+L+ D+ N +DSDG P+H+AA GHK+ + L+
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLI- 123
Query: 128 ATNGVDI 134
+ G D+
Sbjct: 124 -SKGADV 129
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIY 135
+I A GN +K L++ D+ N DSDG P+H+AA GHK+ + L+ + G D+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLI--SKGADVN 64
Query: 136 RGNDGAMVLLFLIAANLYDVALDLL 160
+ L A N + + LL
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLL 89
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D +G T + A+ G+L+ ++VLLKY D+ N +D+ G P++ AAY+GH + + LL+
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK- 122
Query: 129 TNGVDI 134
+G D+
Sbjct: 123 -HGADV 127
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D++G T + AA G+L+ ++VLL+ D+ N D++G P+H AA GH + + LL+
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLK- 89
Query: 129 TNGVDIYRGNDGAMVLLFLIA 149
G D+ + + L+L A
Sbjct: 90 -YGADVNAKDATGITPLYLAA 109
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 56 LATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAY 115
L+ DP +D+ G T + + A G+ + +K+LL D N +DSDG P+H AA
Sbjct: 57 LSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAE 112
Query: 116 YGHKDTFQYLLEATNGVD 133
GHK+ + LL + G D
Sbjct: 113 NGHKEIVKLLL--SKGAD 128
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 54 DKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNA 113
D L DP D+ G T + + A G+ + +K+LL D N +DSDG P+H A
Sbjct: 22 DLLENGADPNA---SDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYA 77
Query: 114 AYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL 160
A GHK+ + LL + G D + L A N + + LL
Sbjct: 78 AENGHKEIVKLLL--SKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D+ G T + + A +G+ + +K+L+ D+ N +DSDG P+H AA GHK+ + L+
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLI-- 90
Query: 129 TNGVDI-YRGNDGAMVLLF 146
+ G D+ + +DG L +
Sbjct: 91 SKGADVNAKDSDGRTPLHY 109
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI- 134
+I A GN +K L++ D+ N DSDG P+H AA GHK+ + L+ + G D+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLI--SKGADVN 64
Query: 135 YRGNDGAMVLLF 146
+ +DG L +
Sbjct: 65 AKDSDGRTPLHY 76
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D+ G T + + A +G+ + +K+L+ D+ N DSDG P+ A +G+++ + LLE
Sbjct: 99 KDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEIVK-LLE 156
Query: 128 ATNG 131
G
Sbjct: 157 KQGG 160
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D+ G T + A +G+L+ ++VLLK D+ N DS G+ P+H AA GH + + LL+
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 128 ATNGVDI 134
NG D+
Sbjct: 135 --NGADV 139
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D G T + A G+L+ ++VLLK D+ N +DS G P+H AA GH + + LL+
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLK 101
Query: 128 ATNGVDI 134
NG D+
Sbjct: 102 --NGADV 106
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
++ A G +++L+ D+ N RD G+ P+H AA++GH + + LL+ NG D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLK--NGADV 73
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D +G T + A G+L+ +K+LL+ D+ N +D +G P+H AA GH + + LLE
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 128 A 128
A
Sbjct: 90 A 90
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 71 HGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATN 130
+G T + A G+L+ +K+LL+ D+ N +D +G P+H AA GH + + LLEA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 131 GVDIYRGNDGAMVLLFLIAANLYDVALDLLKL 162
G D+ + L L A N + L+++KL
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGH---LEVVKL 86
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D+ G T + A G+L+ ++VLLK D+ N D +G+ P+H AA +GH + + LL+
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK- 134
Query: 129 TNGVDI 134
NG D+
Sbjct: 135 -NGADV 139
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D G T + A G+L+ ++VLLK D+ N D G P+ AA +GH + + LL+
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 128 ATNGVDI 134
NG D+
Sbjct: 102 --NGADV 106
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 79 CAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGN 138
A G +++L+ D+ N D+ G+ P+H AA+ GH + + LL+ NG D+ +
Sbjct: 21 AARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLK--NGADVNAVD 77
Query: 139 DGAMVLLFLIA 149
M L L A
Sbjct: 78 HAGMTPLRLAA 88
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D +G T + A G+L+ ++VLLK D+ N D+ G+ P+H AA+ GH + + LL+
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Query: 128 ATNGVDI 134
+G D+
Sbjct: 102 --HGADV 106
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
D G T + A +G+L+ ++VLLKY D+ N D GY P+H AA GH + + LL+
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
G T + G+L+ ++VLLKY D+ N D G+ P+H AAY GH + + LL+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLK 101
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 18/100 (18%)
Query: 75 AVIFCAAK-GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVD 133
AVI AA+ G L L+ LL++ D+ NI D++G LP+H AA GH ++L++ T
Sbjct: 72 AVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 134 IYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDS 173
+R + G D A DL +L+ GR+ + S
Sbjct: 131 GHRNHKG-------------DTACDLARLY---GRNEVVS 154
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 87 ALKVLLK-YNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
A ++LL+ NPDL +D G+ +H+AA G DT Q LLE V+I
Sbjct: 53 ARRLLLRGANPDL---KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI 98
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
D+ G T + A +G+L+ ++VLLK+ D+ N RD G P+H AA GH + + LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
D+ G T + A G+ + ++VLLK+ D+ N RD+DG+ P+H AA GH + + LL+
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLK 101
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D G T + A G+L+ ++VLLKY D+ N +D+ G P+H AA GH + + LL+
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 128 ATNGVDI 134
+G D+
Sbjct: 135 --HGADV 139
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI- 134
++ A G +++L+ D+ N D G P+H AA+ GH + + LL+ +G D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLK--HGADVN 74
Query: 135 YRGNDG 140
R DG
Sbjct: 75 ARDTDG 80
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
D+ G T + A +G+L+ ++VLLK+ D+ N DS G P+H AA GH + + LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D++ TA+ AAKGNLK + +LL Y TNI+D++G P+H A + ++L+
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLV- 192
Query: 128 ATNGVDIY 135
T G IY
Sbjct: 193 -TQGASIY 199
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D++ TA+ AAKGNLK + +LL Y TNI+D++G P+H A + ++L+
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLV- 192
Query: 128 ATNGVDIYRGN 138
T G IY N
Sbjct: 193 -TQGASIYIEN 202
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
G T + A G+L+ ++VLLK D+ N D+ G P+H AA++GH + + LL+ NG
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLK--NG 103
Query: 132 VDIYRGNDGAMVLLFLIA 149
D+ +D + L L A
Sbjct: 104 ADVNAKDDNGITPLHLAA 121
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
D G T + A G+L+ ++VLLK D+ N +D +G P+H AA GH + + LL+
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADV-NAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
++ A G +++L+ D+ N D G+ P+H AAY+GH + + LL+ NG D+
Sbjct: 18 LLEAARAGRDDEVRILMANGADV-NAADVVGWTPLHLAAYWGHLEIVEVLLK--NGADV 73
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D G+ + A G L L+ LL++ D+ NI D++G LP+H AA GH ++L++
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 128 ATNGVDIYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDS 173
T +R + G D A DL +L+ GR+ + S
Sbjct: 125 HTASNVGHRNHKG-------------DTACDLARLY---GRNEVVS 154
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 87 ALKVLLK-YNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
A ++LL+ NPDL +D G +H+AA G DT Q LLE V+I
Sbjct: 53 ARRLLLRGANPDL---KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI 98
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 18/100 (18%)
Query: 75 AVIFCAAK-GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVD 133
AVI AA+ G L L+ LL++ D+ NI D++G LP+H AA GH ++L++ T
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 134 IYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDS 173
+R + G D A DL +L+ GR+ + S
Sbjct: 131 GHRNHKG-------------DTACDLARLY---GRNEVVS 154
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 87 ALKVLLK-YNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
A ++LL+ NPDL +D G+ +H+AA G DT Q LLE V+I
Sbjct: 53 ARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 18/100 (18%)
Query: 75 AVIFCAAK-GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVD 133
AVI AA+ G L L+ LL++ D+ NI D++G LP+H AA GH ++L++ T
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 134 IYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDS 173
+R + G D A DL +L+ GR+ + S
Sbjct: 131 GHRNHKG-------------DTACDLARLY---GRNEVVS 154
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 87 ALKVLLK-YNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
A ++LL+ NPDL +D G+ +H+AA G DT Q LLE V+I
Sbjct: 53 ARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D G+T + A +L+ ++VLLK+ D+ N D+DG P+H AA +GH + + LL+
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGHLEIVEVLLK- 101
Query: 129 TNGVDI 134
+G D+
Sbjct: 102 -HGADV 106
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
G+T + + GN+K +K LL++ D+ N + GY P+H AA GH D LL+
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 77 IFCAAK-GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+ CAA+ G+ +K+LL+ N + N+ + G+ P+H AA GH +T LLE
Sbjct: 84 LHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLE 134
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
G+T + A + ++ + LL+Y N G P+H AA GH + LL
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 132 VDIYRGNDGAMVLLFLIAANLYDVALDLLKLH 163
++ GN + L L+A + D+L H
Sbjct: 271 GNL--GNKSGLTPLHLVAQEGHVPVADVLIKH 300
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
GHT + A +G+++ + LL+ + G+ P+H AA YG + LLE
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLE 167
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 74 TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
T + A G+ + K LL+ N N + D P+H AA GH + + LLE
Sbjct: 49 TPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D G T + A G+L+ ++VLLKY D+ N D+ G P+H AA GH + + LL+
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEVLLK- 101
Query: 129 TNGVDI 134
+G D+
Sbjct: 102 -HGADV 106
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGND 139
A G +++L+ D+ N D DG P+H AA GH + + LL+ G D+ ++
Sbjct: 22 ARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKY--GADVNAEDN 78
Query: 140 GAMVLLFLIA 149
+ L L A
Sbjct: 79 FGITPLHLAA 88
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
QD G + V A G L LKVL+++ D+ N+ D G LP+H A GH +L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFL 126
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
N++D+ G PVH+AA G DT + L+E +G D+
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVE--HGADV 100
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
D G T + A +G+L+ ++VLLKY D+ N D+ G P+H AA GH + + LL+
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D +G T + A G+L+ ++VLLK D+ N D G P+H AA GH + + LL+
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLKNGADV-NALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
++ A G +++L+ D+ N D+ G P+H AA GH + + LL+ NG D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLK--NGADV 73
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D++ TA+ AAKGNLK + +LL Y TNI+D++G P+H A + + L+
Sbjct: 135 KDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLV- 192
Query: 128 ATNGVDIY 135
+ G IY
Sbjct: 193 -SQGASIY 199
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D+ G T + A +G+L+ ++VLLK D+ N D +G+ P+H AA GH + + LL+
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADV-NANDHNGFTPLHLAANIGHLEIVEVLLK- 134
Query: 129 TNGVDI 134
+G D+
Sbjct: 135 -HGADV 139
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
D+ G T + A G+L+ ++VLLK D+ N DS G P+H AA GH + + LL+
Sbjct: 43 SDHVGWTPLHLAAYFGHLEIVEVLLKNGADV-NADDSLGVTPLHLAADRGHLEVVEVLLK 101
Query: 128 ATNGVDI 134
NG D+
Sbjct: 102 --NGADV 106
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
++ A G +++L+ D+ N D G+ P+H AAY+GH + + LL+ NG D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NASDHVGWTPLHLAAYFGHLEIVEVLLK--NGADV 73
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
QD G + V A G L LKVL+++ D+ N+ D G LP+H A GH +L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFL 120
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
N++D+ G PVH+AA G DT + L+E +G D+
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVE--HGADV 94
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D++ TA+ AAKGNLK + +LL Y TNI+D++G P+H A + + L+
Sbjct: 136 KDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLV- 193
Query: 128 ATNGVDIY 135
+ G IY
Sbjct: 194 -SQGASIY 200
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
D+ G T + A +G+L+ ++VLLK+ D+ N D G P+H AA GH + + LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
QD G + V A G L LKVL+++ D+ N DS G LP+H A GH +L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
N++D+ G PVH+AA G DT + L+E +G D+
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVE--HGADV 100
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
QD G + V A G L LKVL+++ D+ N DS G LP+H A GH +L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 100 NIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
N++D+ G PVH+AA G DT + L+E +G D+
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVE--HGADV 102
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 48 EATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGY 107
EA L K VDP+ D G T + A KG+ + ++ LL N +D G+
Sbjct: 58 EAVKYLIKAGALVDPK-----DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW 112
Query: 108 LPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLFLIAANLYDVALDLL 160
P+ A Y H D + LL + ++I R N+ + L + + D+A LL
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINI-RDNEENICLHWAAFSGCVDIAEILL 164
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
QD+ G T +I+ ++ +K+LL D+ NIRD++ + +H AA+ G D + LL
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLA 165
Query: 128 AT---NGVDIY---------RGNDGAMVLLFL 147
A + V+I+ R N V+LFL
Sbjct: 166 AKCDLHAVNIHGDSPLHIAARENRYDCVVLFL 197
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 66 ARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYL 125
A+ G TA++ + G + +K LL D+ N++D DG + A +GHK+ L
Sbjct: 177 AKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLL 235
Query: 126 LEATNGVDI-YRGNDGAMVLLFLIAANLYDVA 156
L A DI DG+ L+ + A ++A
Sbjct: 236 L-AVPSCDISLTDRDGSTALMVALDAGQSEIA 266
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
DN G T + A G+L+ ++VLLK+ D+ + D G+ P+H AA GH + + LL+
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
D +G T + A G+L+ ++VLLKY D+ N D G P+H AA GH + + LL+
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 18/100 (18%)
Query: 75 AVIFCAAK-GNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVD 133
AVI AA+ G L L+ LL+ D+ NI D++G LP+H AA GH ++L++ T
Sbjct: 72 AVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 134 IYRGNDGAMVLLFLIAANLYDVALDLLKLHPTIGRDNIDS 173
+R + G D A DL +L+ GR+ + S
Sbjct: 131 GHRNHKG-------------DTACDLARLY---GRNEVVS 154
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 87 ALKVLLK-YNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
A ++LL+ NPDL +D G+ +H+AA G DT Q LLE V+I
Sbjct: 53 ARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLENQADVNI 98
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 29 GSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKAL 88
G + F+ +A LL+D + L+ ++ +VD +L ++ G TA+ G+ + +
Sbjct: 30 GMRVKFNPLA-LLLDSSLEGEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIV 86
Query: 89 KVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGV 132
K L+++ ++ N DSDG+ P+H AA + ++L+E+ V
Sbjct: 87 KFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D G T + A G+L+ ++VLLK+ D+ I D G P+H AA GH + + LL+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIXGSTPLHLAALIGHLEIVEVLLK- 101
Query: 129 TNGVDI 134
+G D+
Sbjct: 102 -HGADV 106
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
G T + A G+L+ ++VLLK+ D+ N D+ G P+H AA GH + + LL+ +G
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK--HG 136
Query: 132 VDI 134
D+
Sbjct: 137 ADV 139
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 79 CAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
A G +++L+ D+ N D+ G P+H AA YGH + + LL+ +G D+
Sbjct: 21 AARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLK--HGADV 73
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 60 VDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHK 119
DP TL R V A +G L L VL + L ++RD+ G LPV A GH+
Sbjct: 73 ADPATLTRP-------VHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHR 124
Query: 120 DTFQYLLEATNGVDIYRGNDGAMV 143
D +YL A G RG++ A +
Sbjct: 125 DVARYLRAAAGGT---RGSNHARI 145
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 60 VDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHK 119
DP TL R V A +G L L VL + L ++RD+ G LPV A GH+
Sbjct: 73 ADPATLTRP-------VHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHR 124
Query: 120 DTFQYLLEATNGVDIYRGNDGAMV 143
D +YL A G RG++ A +
Sbjct: 125 DVARYLRAAAGGT---RGSNHARI 145
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE- 127
D T + A ++ +++LL++ D+ + +D G +P+HNA YGH + + LL+
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 128 --ATNGVDIYR 136
N +D+++
Sbjct: 114 GACVNAMDLWQ 124
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 60 VDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHK 119
+DP T R G T + + KG++ +++ LL+ D N++D G+ P+H A +GH
Sbjct: 2 IDPFTNHR----GETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHL 56
Query: 120 DTFQYLLE 127
+ LL+
Sbjct: 57 KVVELLLQ 64
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D+ G T + G+LK +++LL++ L N P+H+AA GH D + LL
Sbjct: 39 KDHAGWTPLHEACNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Query: 128 ---ATNGVDIY 135
+ N V+I+
Sbjct: 98 YGASRNAVNIF 108
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D G T + A G+L+ ++VLLK+ D+ I D G P+H AA GH + + LL+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIMGSTPLHLAALIGHLEIVEVLLK- 101
Query: 129 TNGVDI 134
+G D+
Sbjct: 102 -HGADV 106
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
G T + A G+L+ ++VLLK+ D+ N D+ G P+H AA GH + + LL+ +G
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK--HG 136
Query: 132 VDI 134
D+
Sbjct: 137 ADV 139
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 79 CAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
A G +++L+ D+ N D+ G P+H AA YGH + + LL+ +G D+
Sbjct: 21 AARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLK--HGADV 73
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 18 PDALTAKIVEPGSKTIFHTIA--------ELLVDDDSDEATCLLDKLATKVDPQTLARQD 69
P + + GS+ I H + LL+D + L+ ++ +VD +L +
Sbjct: 10 PPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP--N 67
Query: 70 NHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEAT 129
+ G TA+ G+ + +K L+++ ++ N DSDG+ P+H AA + ++L+E+
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 130 NGV 132
V
Sbjct: 127 AAV 129
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 35.4 bits (80), Expect = 0.067, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
A G +++L+ D+ N +D DGY P+H AA GH + + LL+A G D+
Sbjct: 10 ARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA--GADV 61
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 35.0 bits (79), Expect = 0.072, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
+D G T + A +L+ ++VLLK D+ I D+ G P+H A YGH + + LL+
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI-DAIGETPLHLVAMYGHLEIVEVLLK 101
Query: 128 ATNGVDI 134
+G D+
Sbjct: 102 --HGADV 106
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
GHT + A G+L+ ++VLLK D+ N + G P+H AA+ H + + LL+ +G
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVEVLLK--HG 103
Query: 132 VDI 134
D+
Sbjct: 104 ADV 106
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 76 VIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI- 134
++ A G +++L D+ N D G+ P+H AA GH + + LL+ NG D+
Sbjct: 18 LLEAARAGQDDEVRILTANGADV-NANDYWGHTPLHLAAMLGHLEIVEVLLK--NGADVN 74
Query: 135 YRGNDGAMVLLFLIAANLYDVALDLLK 161
GN G L A+ ++ LLK
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVEVLLK 101
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
G+T + A G+ + +K LL D+ N R DG P+H AA GH + + LL G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLL--AKG 65
Query: 132 VDI-YRGNDG 140
D+ R DG
Sbjct: 66 ADVNARSKDG 75
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 72 GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNG 131
G+T + A G+ + +K+LL D+ N R DG P H A GH + + LL+A G
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVK-LLDA-KG 98
Query: 132 VDI 134
D+
Sbjct: 99 ADV 101
Score = 28.5 bits (62), Expect = 7.7, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 105 DGYLPVHNAAYYGHKDTFQYLLEATNGVDI-YRGNDG 140
DG P+HNAA GH + + LL + G D+ R DG
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLL--SKGADVNARSKDG 42
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 49 ATCLLDKLATKVDPQTLARQDNH---GHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSD 105
A L++K A KVD AR+D+ G TA+ + A N +K L+ + +D D
Sbjct: 254 AKLLVEKGA-KVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDED 312
Query: 106 GYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGND 139
G P+ AA G + YL++ V+ D
Sbjct: 313 GKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD 346
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 74 TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
T + F A + ++ LL++ D+ + +D G +P+HNA YGH + + L++
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVK 96
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 74 TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
T + F A + ++ LL++ D+ + +D G +P+HNA YGH + + L++
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVK 98
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 74 TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLE 127
T + F A + ++ LL++ D+ + +D G +P+HNA YGH + + L++
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVK 100
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D G TA+ AA A K LL+ + D NI+D+ G P+H A + FQ L+
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR- 111
Query: 129 TNGVDI-YRGNDGAMVLLFLIAANLYDVALDLLKLHPTI 166
D+ R +DG L+ + + DL+ H +
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150
>pdb|3LPZ|A Chain A, Crystal Structure Of C. Therm. Get4
Length = 336
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 29 GSKTIFHTIAELLVDDDSDEATCLLDKLATKVDPQTLARQD------NHGHTAVIFCA 80
G + H + L V++ EA L TK P+ LAR + + HTA ++CA
Sbjct: 134 GDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCA 191
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 74 TAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVD 133
T + + +G+L + L+KY D + I D +G +H AA +GH YL+ VD
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 134 IYRGN 138
+ N
Sbjct: 137 MMDQN 141
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 65 LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
L + D+HG + + + +G +++L+ + N+ + P+H AA +GH+D Q
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 125 LLE 127
LL+
Sbjct: 91 LLQ 93
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 65 LARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQY 124
L + D+HG + + + +G +++L+ + N+ + P+H AA +GH+D Q
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 125 LLE 127
LL+
Sbjct: 86 LLQ 88
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D G TA+ A A K LL+ + D NI+D+ G P+H A + FQ L+
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR- 111
Query: 129 TNGVDI-YRGNDGAMVLLFLIAANLYDVALDLLKLHPTI 166
D+ R +DG L+ + + DL+ H +
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 61 DPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKD 120
DP TL R H A A +G L L VL + L ++ D+ G LPV A GH+D
Sbjct: 74 DPATLTRPV---HDA----AREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRD 125
Query: 121 TFQYLLEAT 129
+YL AT
Sbjct: 126 IARYLHAAT 134
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D G TA+ A A K LL+ + D NI+D+ G P+H A + FQ L+
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR- 112
Query: 129 TNGVDI-YRGNDGAMVLLFLIAANLYDVALDLLKLHPTI 166
D+ R +DG L+ + + DL+ H +
Sbjct: 113 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 151
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D G TA+ A A K LL+ + D NI+D+ G P+H A + FQ L+
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR- 79
Query: 129 TNGVDI-YRGNDGAMVLLFLIAANLYDVALDLLKLHPTI 166
D+ R +DG L+ + + DL+ H +
Sbjct: 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118
>pdb|4EWJ|A Chain A, Structure Of The Enloase From Streptococcus Suis Serotype
2
pdb|4EWJ|B Chain B, Structure Of The Enloase From Streptococcus Suis Serotype
2
Length = 443
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 87 ALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGNDGAMVLLF 146
ALK +LK +T + D G+ P + G +D + ++EA G +G M+
Sbjct: 188 ALKKILKARGLVTAVGDEGGFAP----KFEGTEDGVETIIEAIEAAGYEAGENGIMIGFD 243
Query: 147 LIAANLYD 154
++ YD
Sbjct: 244 CASSEFYD 251
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 69 DNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEA 128
D G TA+ A A K LL+ + D I+D+ G P+H A + FQ LL
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLR- 76
Query: 129 TNGVDI-YRGNDGAMVLLFLIAANLYDVALDLLKLHPTI 166
D+ R +DG L+ L + DL+ H +
Sbjct: 77 NRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADV 115
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 54 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 113
Query: 105 D 105
D
Sbjct: 114 D 114
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
A G +++L+ D+ +D +G P+H AA GH + + LLEA G D+
Sbjct: 32 ARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEA--GADV 83
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 53 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 112
Query: 105 D 105
D
Sbjct: 113 D 113
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 52 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 111
Query: 105 D 105
D
Sbjct: 112 D 112
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 52 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 111
Query: 105 D 105
D
Sbjct: 112 D 112
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGND 139
A+ G+LK +++L N +D G+ P+ +A GH D L+E N
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
Query: 140 GA 141
GA
Sbjct: 208 GA 209
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGND 139
A+ G+LK +++L N +D G+ P+ +A GH D L+E N
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
Query: 140 GA 141
GA
Sbjct: 208 GA 209
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDIYRGND 139
A+ G+LK +++L N +D G+ P+ +A GH D L+E N
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
Query: 140 GA 141
GA
Sbjct: 208 GA 209
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 53 LDKLATKVDPQTLARQDNHGHTAVIFCAAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHN 112
+DKL D L +D G TA+I+ L + LL ++ N +D G P+
Sbjct: 51 IDKLVENFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMW 107
Query: 113 AAYYGHKDTFQYLLE 127
+ +G+ + +LLE
Sbjct: 108 SIIFGYSEMSYFLLE 122
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 80 AAKGNLKALKVLLKYNPDLTNIRDSDGYLPVHNAAYYGHKDTFQYLLEATNGVDI 134
A G +++L+ D+ +D +G P+H AA GH + + LLEA G D+
Sbjct: 14 ARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEA--GADV 65
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 47 DEATCLLDKLATKVDPQTLARQDNHGHTAVIF-CA-AKGNLKALKVLLKYNPDLTNIRDS 104
D TCLLD L T + A +D + T F C A N K+ + + +Y + ++DS
Sbjct: 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 105 D 105
D
Sbjct: 107 D 107
>pdb|3HO6|A Chain A, Structure-Function Analysis Of Inositol
Hexakisphosphate- Induced Autoprocessing In Clostridium
Difficile Toxin A
pdb|3HO6|B Chain B, Structure-Function Analysis Of Inositol
Hexakisphosphate- Induced Autoprocessing In Clostridium
Difficile Toxin A
Length = 267
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 25 IVEPGSKTIFHTIAELLVDDDSDEATCLL 53
+ E GSK H I +L DD S EATC L
Sbjct: 29 VEEAGSKNYVHYIIQLQGDDISYEATCNL 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,187,207
Number of Sequences: 62578
Number of extensions: 478836
Number of successful extensions: 1429
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 260
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)