BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014732
         (419 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
 pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
          Length = 87

 Score = 33.9 bits (76), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 116 FLKQSAADYIKAFDPSSHAFPQREQLQQQYCDKVHPEPFNSA 157
            L+Q+ AD  ++F+   H+   RE L+Q Y   VHP     A
Sbjct: 46  LLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKPA 87


>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
          Length = 84

 Score = 33.5 bits (75), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 116 FLKQSAADYIKAFDPSSHAFPQREQLQQQYCDKVHP 151
            L+Q+ AD  ++F+   H+   RE L+Q Y   VHP
Sbjct: 44  LLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHP 79


>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
 pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
          Length = 92

 Score = 33.1 bits (74), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 116 FLKQSAADYIKAFDPSSHAFPQREQLQQQYCDKVHP 151
            L+Q+ AD  ++F+   H+   RE L+Q Y   VHP
Sbjct: 51  LLEQAGADATESFEDLGHSPDAREMLKQYYIGDVHP 86


>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
 pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
          Length = 86

 Score = 32.7 bits (73), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 116 FLKQSAADYIKAFDPSSHAFPQREQLQQQYCDKVHP 151
            L+Q+ AD  ++F+   H+   RE L+Q Y   VHP
Sbjct: 46  LLEQAGADATESFEDIGHSPDAREMLKQYYIGDVHP 81


>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I
           3-Dehydroquinate Dehydratase (Arod) From Salmonella
           Typhimurium Lt2 In Non-Covalent Complex With
           Dehydroquinate.
 pdb|3NNT|B Chain B, Crystal Structure Of K170m Mutant Of Type I
           3-Dehydroquinate Dehydratase (Arod) From Salmonella
           Typhimurium Lt2 In Non-Covalent Complex With
           Dehydroquinate.
 pdb|4IUO|A Chain A, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (arod) K170m Mutant In
           Complex With Quinate
 pdb|4IUO|B Chain B, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (arod) K170m Mutant In
           Complex With Quinate
          Length = 276

 Score = 31.6 bits (70), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 299 RKLPELVENNPLIAV------DVLTKLINSPEISEYYTVLVNMDMSLHSMEVVNRLTTAV 352
           RK+ EL  + P+IAV      DVLT L  + E+ E Y     + MS+    V++RL   V
Sbjct: 183 RKMQELGADIPMIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEV 242


>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
 pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
 pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
 pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
          Length = 87

 Score = 31.6 bits (70), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 118 KQSAADYIKAFDPSSHAFPQREQLQQQYCDKVHP 151
           +Q+ AD  ++F+   H+   RE L+Q Y   VHP
Sbjct: 48  EQAGADATESFEDVGHSPDAREMLKQYYIGDVHP 81


>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
 pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
          Length = 92

 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 116 FLKQSAADYIKAFDPSSHAFPQREQLQQQYCDKVHP 151
            L+Q+  D  ++F+   H+   RE L+Q Y   +HP
Sbjct: 51  LLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHP 86


>pdb|3VBL|A Chain A, Crystal Structure Of The S84c Mutant Of Antd, An
           N-Acyltransferase From Bacillus Cereus In Complex With
           Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
 pdb|3VBL|C Chain C, Crystal Structure Of The S84c Mutant Of Antd, An
           N-Acyltransferase From Bacillus Cereus In Complex With
           Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
 pdb|3VBL|E Chain E, Crystal Structure Of The S84c Mutant Of Antd, An
           N-Acyltransferase From Bacillus Cereus In Complex With
           Dtdp-4-Amino-4,6-Dideoxyglucose And Coenzyme A
          Length = 205

 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 250 MCADTSRGAAVRDLIAKALKGPLLPAQYEQV 280
           +C+ T   AA+ D    AL GP +P QY+ V
Sbjct: 100 ICSRTIVYAAIDDFSGNALMGPTIPNQYKNV 130


>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (arod) E86a Mutant
 pdb|4GUF|B Chain B, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (arod) E86a Mutant
 pdb|4GUG|A Chain A, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (arod) E86a Mutant In
           Complex With Dehydroshikimate (crystal Form #1)
 pdb|4GUG|B Chain B, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (arod) E86a Mutant In
           Complex With Dehydroshikimate (crystal Form #1)
 pdb|4GUH|A Chain A, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (arod) E86a Mutant In
           Complex With Dehydroshikimate (crystal Form #2)
 pdb|4GUH|B Chain B, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (arod) E86a Mutant In
           Complex With Dehydroshikimate (crystal Form #2)
          Length = 276

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 299 RKLPELVENNPLIAV------DVLTKLINSPEISEYYTVLVNMDMSLHSMEVVNRLTTAV 352
           RK+ EL  + P IAV      DVLT L  + E+ E Y     + MS+    V++RL   V
Sbjct: 183 RKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEV 242


>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium Lt2 In Covalent
           Complex With Dehydroquinate
 pdb|3M7W|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium Lt2 In Covalent
           Complex With Dehydroquinate
 pdb|3M7W|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium Lt2 In Covalent
           Complex With Dehydroquinate
 pdb|3M7W|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium Lt2 In Covalent
           Complex With Dehydroquinate
 pdb|3M7W|E Chain E, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium Lt2 In Covalent
           Complex With Dehydroquinate
 pdb|3M7W|F Chain F, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium Lt2 In Covalent
           Complex With Dehydroquinate
 pdb|3OEX|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium With Close Loop
           Conformation.
 pdb|3OEX|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium With Close Loop
           Conformation.
 pdb|3OEX|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium With Close Loop
           Conformation.
 pdb|3OEX|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium With Close Loop
           Conformation.
 pdb|4GFS|A Chain A, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
           Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
           Nickel Bound At Active Site
 pdb|4GFS|B Chain B, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
           Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
           Nickel Bound At Active Site
 pdb|4GUI|A Chain A, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (Arod) In Complex With
           Quinate
 pdb|4GUI|B Chain B, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (Arod) In Complex With
           Quinate
 pdb|4GUJ|A Chain A, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (Arod) In Complex With
           Shikimate
 pdb|4GUJ|B Chain B, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
           3- Dehydroquinate Dehydratase (Arod) In Complex With
           Shikimate
          Length = 255

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 299 RKLPELVENNPLIAV------DVLTKLINSPEISEYYTVLVNMDMSLHSMEVVNRLTTAV 352
           RK+ EL  + P IAV      DVLT L  + E+ E Y     + MS+    V++RL   V
Sbjct: 162 RKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEV 221


>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
           Dehydratase (Arod) From Salmonella Typhimurium Lt2.
 pdb|3L2I|B Chain B, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
           Dehydratase (Arod) From Salmonella Typhimurium Lt2.
 pdb|3LB0|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium Lt2 With Citrate
           Bound To The Active Site.
 pdb|3LB0|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Typhimurium Lt2 With Citrate
           Bound To The Active Site.
 pdb|3S42|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Enterica Typhimurium Lt2 With
           Malonate And Boric Acid At The Active Site
 pdb|3S42|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
           (Arod) From Salmonella Enterica Typhimurium Lt2 With
           Malonate And Boric Acid At The Active Site
          Length = 276

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 299 RKLPELVENNPLIAV------DVLTKLINSPEISEYYTVLVNMDMSLHSMEVVNRLTTAV 352
           RK+ EL  + P IAV      DVLT L  + E+ E Y     + MS+    V++RL   V
Sbjct: 183 RKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEV 242


>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
           Dehydroquinate Dehydratase (Arod) From Salmonella
           Typhimurium
 pdb|3O1N|B Chain B, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
           Dehydroquinate Dehydratase (Arod) From Salmonella
           Typhimurium
          Length = 276

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 299 RKLPELVENNPLIAV------DVLTKLINSPEISEYYTVLVNMDMSLHSMEVVNRLTTAV 352
           RK+ EL  + P IAV      DVLT L  + E+ E Y     + MS+    V++RL   V
Sbjct: 183 RKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEV 242


>pdb|4EBA|A Chain A, Crystal Structure Of The Rna14-Rna15 Complex
 pdb|4EBA|B Chain B, Crystal Structure Of The Rna14-Rna15 Complex
 pdb|4EBA|C Chain C, Crystal Structure Of The Rna14-Rna15 Complex
 pdb|4EBA|D Chain D, Crystal Structure Of The Rna14-Rna15 Complex
 pdb|4EBA|E Chain E, Crystal Structure Of The Rna14-Rna15 Complex
 pdb|4EBA|F Chain F, Crystal Structure Of The Rna14-Rna15 Complex
          Length = 645

 Score = 29.3 bits (64), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 2   LSQEESGRVFEMLKSQEKPVEEIVSDLISTFPRHRHF 38
           + +EE G+ F+  K+ E P+   + +L+   P+ ++F
Sbjct: 588 MREEEDGQAFKKFKANEDPIPPEIVELLKVLPKRQYF 624


>pdb|4E85|A Chain A, Crystal Structure Of Hat Domain Of Rna14
 pdb|4E85|B Chain B, Crystal Structure Of Hat Domain Of Rna14
          Length = 678

 Score = 29.3 bits (64), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 2   LSQEESGRVFEMLKSQEKPVEEIVSDLISTFPRHRHF 38
           + +EE G+ F+  K+ E P+   + +L+   P+ ++F
Sbjct: 621 MREEEDGQAFKKFKANEDPIPPEIVELLKVLPKRQYF 657


>pdb|4E6H|A Chain A, Crystal Structure Of The Hat Domain Of K. Lactis Rna14
          Length = 679

 Score = 29.3 bits (64), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 2   LSQEESGRVFEMLKSQEKPVEEIVSDLISTFPRHRHF 38
           + +EE G+ F+  K+ E P+   + +L+   P+ ++F
Sbjct: 622 MREEEDGQAFKKFKANEDPIPPEIVELLKVLPKRQYF 658


>pdb|3OCD|A Chain A, Diheme Soxax - C236m Mutant
 pdb|3OCD|C Chain C, Diheme Soxax - C236m Mutant
          Length = 275

 Score = 28.5 bits (62), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 237 IPDNNHELLWDHGMCADTSRGAAVRDLIAKALKGPLLPAQYEQVVVELAN 286
           + D    LLW    C +T +G   + L+AK   GP   +  E +V  +AN
Sbjct: 100 VMDLEQRLLW----CMETIQGRDTKPLVAKPFSGPGRTSDMEDLVAFIAN 145


>pdb|3OA8|A Chain A, Diheme Soxax
 pdb|3OA8|C Chain C, Diheme Soxax
 pdb|3OA8|E Chain E, Diheme Soxax
          Length = 275

 Score = 28.5 bits (62), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 237 IPDNNHELLWDHGMCADTSRGAAVRDLIAKALKGPLLPAQYEQVVVELAN 286
           + D    LLW    C +T +G   + L+AK   GP   +  E +V  +AN
Sbjct: 100 VMDLEQRLLW----CMETIQGRDTKPLVAKPFSGPGRTSDMEDLVAFIAN 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,177,493
Number of Sequences: 62578
Number of extensions: 484225
Number of successful extensions: 1106
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 19
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)