Query 014732
Match_columns 419
No_of_seqs 103 out of 114
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4508 Uncharacterized conser 100.0 2E-79 4.3E-84 611.0 22.4 399 2-410 63-494 (522)
2 PF10155 DUF2363: Uncharacteri 100.0 6.3E-30 1.4E-34 225.2 9.4 97 305-408 1-110 (126)
3 PF05819 NolX: NolX protein; 62.9 21 0.00046 38.9 6.9 116 197-315 213-339 (624)
4 PF09808 SNAPc_SNAP43: Small n 60.0 27 0.00059 32.8 6.5 76 5-85 4-94 (194)
5 cd08318 Death_NMPP84 Death dom 42.7 26 0.00055 28.9 3.0 50 270-319 3-53 (86)
6 PF09030 Creb_binding: Creb bi 38.3 27 0.00059 30.4 2.5 33 259-292 55-87 (104)
7 PF10678 DUF2492: Protein of u 29.1 48 0.001 27.5 2.4 36 8-43 7-44 (78)
8 PF13490 zf-HC2: Putative zinc 27.2 1E+02 0.0022 20.7 3.5 28 259-286 3-30 (36)
9 PF11212 DUF2999: Protein of u 27.1 1.4E+02 0.0031 24.6 4.8 51 269-319 10-67 (82)
10 TIGR03882 cyclo_dehyd_2 bacter 25.1 93 0.002 29.4 4.0 49 1-53 26-74 (193)
11 PF07637 PSD5: Protein of unkn 20.6 1.4E+02 0.003 23.2 3.5 30 258-287 5-34 (64)
No 1
>KOG4508 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2e-79 Score=610.99 Aligned_cols=399 Identities=33% Similarity=0.478 Sum_probs=360.5
Q ss_pred CChHHHHHHHHhhccCCC-cHHHHHHHHHhhCCCCCcchhhhHHHHHhcCCCcCCc-hhHHHHHHHHHhhhcCCCCCCCC
Q 014732 2 LSQEESGRVFEMLKSQEK-PVEEIVSDLISTFPRHRHFVLCTTLSLLLQDKKALNS-TERLVAFAILHHSYCSQKPSANP 79 (419)
Q Consensus 2 L~~~e~~~Ll~lLse~~~-tLEsi~~~F~~~F~k~~~F~vg~~L~~LLqd~dlL~~-~QRLia~yiLy~~Y~~e~~~~NP 79 (419)
++++|.+.++++++++.. +||.+++.|++.|.+.|||++|+.|+|+||++||+.. ++|+.|+|++|++|++++.++||
T Consensus 63 ~~~~e~t~vls~~~~~~~~~fe~l~t~F~~~fe~ad~~r~~nil~m~lq~pdl~p~~~~rl~al~~vy~~Y~t~~~aanp 142 (522)
T KOG4508|consen 63 FNSLENTFVLSFTNRCSLAIFEALATCFEIHFEEADVIRRLNILYMVLQLPDLEPELPKRLKALSDVYSHYATFLFAANP 142 (522)
T ss_pred eccchhHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHhhhhhHHHhhhCcccccccccchhHHHHHHHHHhccccccCh
Confidence 468899999999999985 9999999999999999999999999999999999954 99999999999999999999999
Q ss_pred cHHHHHhhh----ccccccHHHHHHHHHHhcCCC--CCCchHHHhhcHHHHHhhcCC---------CCCCCCCHHHHHHH
Q 014732 80 FISLIINSA----CDDEVEKFERAFLLQLLSSSS--SNSNKEFLKQSAADYIKAFDP---------SSHAFPQREQLQQQ 144 (419)
Q Consensus 80 F~~vfi~~~----~~~~~~~~Ek~fL~~LLs~~~--~~~~kei~kkt~~~il~~~~~---------~~~~~~d~~~l~~~ 144 (419)
|.+-|.+.+ +..+..+.||.++.++|.... .+..+.+++-.+.+.+..+.+ ...+.++.+++|.+
T Consensus 143 f~~~~~~ml~~a~~s~~~~q~er~~l~~flq~~a~~~~~v~~il~l~~vd~~~~~tp~~~~~hD~p~~g~~~~~~~lq~e 222 (522)
T KOG4508|consen 143 FEHRIEAMLARAIVSNNINQVERLTLPDFLQKAAAGTVVVEGILRLGFVDWCEANTPHWPEVHDLPKAGRELGCERLQYE 222 (522)
T ss_pred HHHHHHHHhccccccccccccccccchhhcccccccchhhhhhHhccchHHHHhcCCCchhhcchhHHhhhccchhhhhh
Confidence 999776543 466778899999888887754 344577777777777766554 33445678889999
Q ss_pred hhhhcCCCCCCc--ccccCCccccccCCCCCCCCCCCCCCCcCCCCcccccCCCcHHHHHhhhhccCCCCCCCCCCcCCC
Q 014732 145 YCDKVHPEPFNS--AYINASTKNAFPDPDLPHGCDPNSPEFDFQPGAKTKLGAGSKDETVTGLLTHLSLKGLDPRWIRPL 222 (419)
Q Consensus 145 ~~e~~~~~~~~~--~~~~~~i~~vI~dpD~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~L~~l~~~~s~~~f~P~fiRp~ 222 (419)
|.+ ++...| ..+++++++.+.|||++..|++.+|||+...+..+..+++.+++++..........+|+|+||||.
T Consensus 223 ~g~---~~~~~P~~h~a~~slp~~l~DPdip~~~d~~~pefdvat~V~~~m~SGd~~e~~s~F~~~~t~~~~~p~~IrP~ 299 (522)
T KOG4508|consen 223 SGM---AEAFYPIMHNAPTSLPPRLEDPDIPEWRDKVDPEFDVATPVIYSMCSGDQEELMSAFDELETIAEYQPDLIRPE 299 (522)
T ss_pred hhc---ccccCcccccCcccCCccccCCCCcccccCCCCccccccccchhhcCCCchHHHHHHhhhhhhhhcCccccCCC
Confidence 998 455555 237899999999999999999999999988888888899999999887777667789999999999
Q ss_pred CCCCCCCCCcceeccCC-CCCccccccCCccCCCchHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCcchhhhcCCCCCCh
Q 014732 223 PPRFPVLDRELEWLIPD-NNHELLWDHGMCADTSRGAAVRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPRKL 301 (419)
Q Consensus 223 Ppllp~~~~El~wl~p~-~~~~~lwD~s~~~~~s~~~~~r~Lm~kA~~~~Ls~~qqq~ll~~L~~dp~lv~~~gltp~~L 301 (419)
||.+++|++|+.|++|. ..|++.||..||++++.|.++|++|.||++++|+..+|.+++-+|.+||++|+|+|+||++|
T Consensus 300 pp~~~~c~del~w~~ps~p~hev~wD~~mc~d~s~Gv~lkd~~ikglk~tlstt~qsdmm~el~~dPklv~h~gvtp~kl 379 (522)
T KOG4508|consen 300 PPELNDCDDELSWSSPSAPPHEVSWDLEMCLDISDGVDLKDEVIKGLKGTLSTTSQSDMMIELVTDPKLVLHAGVTPEKL 379 (522)
T ss_pred CcccCchHhHhhccCCCCCccccccchhhcccccCcccHHHHHHHHccCCCCCccHHHHHHHHhcCcceeEecccChhhh
Confidence 99999999999999995 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhChHHHHHHHHHhcCCCChhHHHHHHhhCCCChhHHHHHHHHHhcCCCChHHHHHHHHhhHhhhhhhhH------
Q 014732 302 PELVENNPLIAVDVLTKLINSPEISEYYTVLVNMDMSLHSMEVVNRLTTAVELPKEFVRMYITNCISSCQNIKV------ 375 (419)
Q Consensus 302 p~LVEnNP~IAievLlkL~~s~~~~eY~d~Lv~md~Sl~smEVVnrL~tsv~LP~eFi~~YIsnCI~~Ce~iKd------ 375 (419)
|+|||+||.+|+|+|+||++|.+|++||.+|+|||||+|||||||||||+|++|.+|+|+||+|||++||++||
T Consensus 380 p~lVe~Np~~A~e~L~kl~~S~qi~~Y~~~l~nmdmslHSmEvVnrLttav~lp~~fi~~yi~ncis~ce~~kdkymqnR 459 (522)
T KOG4508|consen 380 PSLVETNPKFAGEFLVKLALSEQIKRYMRLLENMDMSLHSMEVVNRLTTAVILPDKFIQEYIENCISFCEHTKDKYMQNR 459 (522)
T ss_pred HHHHHcChHHHHHHHHHHhhHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred -------HHHHHhhhhhcCceeeeecChhHHHHHHHHHHhhh
Q 014732 376 -------FLFSMLFCCSNGIIYKALCNIKVFLFSMLFCCLNG 410 (419)
Q Consensus 376 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (419)
|+||| |||.||. =.|+|+|+|-||+--.
T Consensus 460 lVRLVcvflqsL---iRnkIiN----V~DlfieVqaFciefs 494 (522)
T KOG4508|consen 460 LVRLVCVFLQSL---IRNKIIN----VEDLFIEVQAFCIEFS 494 (522)
T ss_pred hHHHHHHHHHHH---HHHhccc----HHHHHHHHHhhhhhhh
Confidence 78999 9999997 3789999999998543
No 2
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=99.96 E-value=6.3e-30 Score=225.17 Aligned_cols=97 Identities=60% Similarity=0.942 Sum_probs=93.2
Q ss_pred HHhChHHHHHHHHHhcCCCChhHHHHHHhhCCCChhHHHHHHHHHhcCCCChHHHHHHHHhhHhhhhhhh----------
Q 014732 305 VENNPLIAVDVLTKLINSPEISEYYTVLVNMDMSLHSMEVVNRLTTAVELPKEFVRMYITNCISSCQNIK---------- 374 (419)
Q Consensus 305 VEnNP~IAievLlkL~~s~~~~eY~d~Lv~md~Sl~smEVVnrL~tsv~LP~eFi~~YIsnCI~~Ce~iK---------- 374 (419)
|||||.||+++|+++++++++++|||+|++||||+|||||||||+|++++|++|||+||+|||++||++|
T Consensus 1 ienNp~IA~~~l~~l~~s~~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 1 IENNPNIAIEILVKLINSPNFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred CCCcHHHHHHHHHHHcCCchHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---HHHHHHhhhhhcCceeeeecChhHHHHHHHHHHh
Q 014732 375 ---VFLFSMLFCCSNGIIYKALCNIKVFLFSMLFCCL 408 (419)
Q Consensus 375 ---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (419)
.|+++| ||+||++. .|+++|++.||.=
T Consensus 81 lvcvfl~sL---ir~~i~~~----~~l~~evq~FCle 110 (126)
T PF10155_consen 81 LVCVFLQSL---IRNKIIDV----EDLFIEVQAFCLE 110 (126)
T ss_pred hHHHHHHHH---HHcCCCch----HHHHhhHHHHHHH
Confidence 678899 99999994 8899999999964
No 3
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=62.92 E-value=21 Score=38.87 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=71.0
Q ss_pred cHHHHHhhhhccCCCCCCCCCCcCCCCCCCCCCCCcceeccCCCC-CccccccCCccCCCchHHHHHHHHHHHcCCCCHH
Q 014732 197 SKDETVTGLLTHLSLKGLDPRWIRPLPPRFPVLDRELEWLIPDNN-HELLWDHGMCADTSRGAAVRDLIAKALKGPLLPA 275 (419)
Q Consensus 197 ~~~~~L~~l~~~~s~~~f~P~fiRp~Ppllp~~~~El~wl~p~~~-~~~lwD~s~~~~~s~~~~~r~Lm~kA~~~~Ls~~ 275 (419)
..+++|.++.+.+- ..|.+.=.|.+|+ |+....+.|---..+ .++.-=....-..+.-..-++=+.+-...+=|+.
T Consensus 213 ~mraai~al~~~p~-~~~a~~~~~~~~~--p~~~s~itw~gg~lt~~eleiVavL~RHkDk~pl~w~~l~~k~nDPsTPp 289 (624)
T PF05819_consen 213 DMRAAIEALDQDPQ-PFFAMASQRVAPA--PVDSSRITWNGGTLTQNELEIVAVLNRHKDKCPLDWKSLDDKINDPSTPP 289 (624)
T ss_pred HHHHHHHHhhcCCc-cccccCCccCCCC--CCCCCcceecCCcccccchhhhhhhhhccccCCcchhhHHhhccCCCCCh
Confidence 56677877766643 2333322343332 244555778654432 2221100000000111123344556677899999
Q ss_pred HHHHHHHHHhcCcchhhhcC----------CCCCChhHHHHhChHHHHHH
Q 014732 276 QYEQVVVELANDPKLVYHCG----------LTPRKLPELVENNPLIAVDV 315 (419)
Q Consensus 276 qqq~ll~~L~~dp~lv~~~g----------ltp~~Lp~LVEnNP~IAiev 315 (419)
+.+.-++.|.+||.++|-+| ++...|..+.+|+|+||..-
T Consensus 290 DLk~Al~~L~~DP~lf~AigsqgdGkcgGKI~AkDls~fs~~H~qva~y~ 339 (624)
T PF05819_consen 290 DLKAALQALQQDPALFYAIGSQGDGKCGGKIKAKDLSKFSSHHPQVAEYA 339 (624)
T ss_pred hHHHHHHHHhhChHHHHHhccCCCCCcCCeechhhHHHHHhcChHHHHHH
Confidence 99999999999999999875 78889999999999998754
No 4
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=59.99 E-value=27 Score=32.80 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHHHHhhc-cCCCcHHHHHHHHHh-hC-----CCCC---cch-----hhhHHHHHhcCCCcCCchhHHHHHHHHHhh
Q 014732 5 EESGRVFEMLK-SQEKPVEEIVSDLIS-TF-----PRHR---HFV-----LCTTLSLLLQDKKALNSTERLVAFAILHHS 69 (419)
Q Consensus 5 ~e~~~Ll~lLs-e~~~tLEsi~~~F~~-~F-----~k~~---~F~-----vg~~L~~LLqd~dlL~~~QRLia~yiLy~~ 69 (419)
+|+.+|+.--. .+..+|++....+.+ +| ++.+ ... ...++-.++.. .+..+|+.|+|+||-+
T Consensus 4 ~D~~~Ll~~F~~~~~~~F~~F~~~W~~~~f~~if~g~~~~~e~~~f~~~~l~~~~~y~~~~---~s~~~Rvg~lYlLY~L 80 (194)
T PF09808_consen 4 EDIDELLQRFQQAESVRFEDFKRLWREMKFSYIFYGRPNQSELIEFMEELLQIALKYFLPP---RSLQERVGGLYLLYAL 80 (194)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHCCcHHHHccCCChHHHHHHHHHHHHHHHHHHccC---ccHHHHHHHHHHHHHH
Confidence 67888886554 456899998887766 12 2222 111 12222233333 2568999999999999
Q ss_pred hcCCCCCCCCcHHHHH
Q 014732 70 YCSQKPSANPFISLII 85 (419)
Q Consensus 70 Y~~e~~~~NPF~~vfi 85 (419)
|..+|. .|...+-+
T Consensus 81 Y~tQp~--~~~~kIri 94 (194)
T PF09808_consen 81 YNTQPC--KPKVKIRI 94 (194)
T ss_pred HhcCCC--CCccceEE
Confidence 999963 55544443
No 5
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=42.71 E-value=26 Score=28.95 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHhcCc-chhhhcCCCCCChhHHHHhChHHHHHHHHHh
Q 014732 270 GPLLPAQYEQVVVELANDP-KLVYHCGLTPRKLPELVENNPLIAVDVLTKL 319 (419)
Q Consensus 270 ~~Ls~~qqq~ll~~L~~dp-~lv~~~gltp~~Lp~LVEnNP~IAievLlkL 319 (419)
.++|.+|.+.|-..+-+|. +|..++|++...+..+-..|+.+...+...|
T Consensus 3 ~~~t~~~l~~ia~~iG~~Wk~Lar~LGls~~dI~~i~~~~~~~~eq~~~mL 53 (86)
T cd08318 3 KPVTGEQITVFANKLGEDWKTLAPHLEMKDKEIRAIESDSEDIKMQAKQLL 53 (86)
T ss_pred CCCCHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHhcCCCHHHHHHHHH
Confidence 5789999999999999998 8999999999999998888888755544433
No 6
>PF09030 Creb_binding: Creb binding; InterPro: IPR014744 This entry represents the interlocking domain of the eukaryotic nuclear receptor coactivators CREBP and p300. The interlocking domain forms a 3-helical non-globular array that forms interlocked heterodimers with its target. Nuclear receptors are ligand-activated transcription factors involved in the regulation of many processes, including development, reproduction and homeostasis. Nuclear receptor coactivators act to modulate the function of nuclear receptors. Coactivators associate with promoters and enhancers primarily through protein-protein contacts to facilitate the interaction between DNA-bound transcription factors and the transcription machinery. Many of these coactivators are structurally related, including CBP (CREB-binding protein) and p300 []. CBP and p300 both have histone acetyltransferase activity (2.3.1.48 from EC). CBP/p300 proteins function synergistically to activate transcription, acting to remodel chromatin and to recruit RNA polymerase II and the basal transcription machinery. CBP is required for proper cell cycle control, differentiation and apoptosis. The interaction of CBP/p300 with transcription factors involves several small domains. The IBiD domain in the C-terminal of CBP is responsible for CBP interaction with IRF-3, as well as with the adenoviral oncoprotein E1A, TIF-2 coactivator, and the IRF homologue KSHV IRF-1 []. ; GO: 0003713 transcription coactivator activity, 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0016573 histone acetylation, 0000123 histone acetyltransferase complex, 0005634 nucleus; PDB: 2KKJ_A 2C52_A 1JJS_A 2L14_A 1KBH_B 1ZOQ_C.
Probab=38.31 E-value=27 Score=30.44 Aligned_cols=33 Identities=36% Similarity=0.606 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcCcchhh
Q 014732 259 AVRDLIAKALKGPLLPAQYEQVVVELANDPKLVY 292 (419)
Q Consensus 259 ~~r~Lm~kA~~~~Ls~~qqq~ll~~L~~dp~lv~ 292 (419)
+..+|| +.+|++=|+.+|++||+-|+++|.|..
T Consensus 55 ALQ~LL-rTLkSPsSP~QQQQVLnILkSNPqLMA 87 (104)
T PF09030_consen 55 ALQQLL-RTLKSPSSPQQQQQVLNILKSNPQLMA 87 (104)
T ss_dssp HHHHHH-HCHCSSSSCHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHH-HHhcCCCCHHHHHHHHHHHhhCHHHHH
Confidence 455655 679999999999999999999987763
No 7
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=29.10 E-value=48 Score=27.52 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=31.4
Q ss_pred HHHHHhh--ccCCCcHHHHHHHHHhhCCCCCcchhhhH
Q 014732 8 GRVFEML--KSQEKPVEEIVSDLISTFPRHRHFVLCTT 43 (419)
Q Consensus 8 ~~Ll~lL--se~~~tLEsi~~~F~~~F~k~~~F~vg~~ 43 (419)
-.+|.++ ++..-|-+++.++...+|+.+-||.-|++
T Consensus 7 HeVL~mmi~~~~~~t~~~L~~ai~~~FG~~arFhTCSa 44 (78)
T PF10678_consen 7 HEVLNMMIESGNPYTKEELKAAIIEKFGEDARFHTCSA 44 (78)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhCCCceEEecCC
Confidence 3578888 77789999999999999999999988864
No 8
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=27.17 E-value=1e+02 Score=20.74 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhc
Q 014732 259 AVRDLIAKALKGPLLPAQYEQVVVELAN 286 (419)
Q Consensus 259 ~~r~Lm~kA~~~~Ls~~qqq~ll~~L~~ 286 (419)
+++++|..-..+.|++.++..+-..|+.
T Consensus 3 ~~~~~l~~y~dg~L~~~~~~~~~~HL~~ 30 (36)
T PF13490_consen 3 EVRELLSAYLDGELSPEERARLEAHLAS 30 (36)
T ss_dssp --HHHHHHHHCT-S-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHc
Confidence 5889999999999999999999888865
No 9
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=27.10 E-value=1.4e+02 Score=24.62 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHHHhcCc----chhhhcCCCCCChhHH---HHhChHHHHHHHHHh
Q 014732 269 KGPLLPAQYEQVVVELANDP----KLVYHCGLTPRKLPEL---VENNPLIAVDVLTKL 319 (419)
Q Consensus 269 ~~~Ls~~qqq~ll~~L~~dp----~lv~~~gltp~~Lp~L---VEnNP~IAievLlkL 319 (419)
+--.|+++...+.+.|-.+| -.+-..|++++||..| |-.||.+..|....|
T Consensus 10 ehnvsd~qi~elFq~lT~NPl~AMa~i~qLGip~eKLQ~lm~~VMqnP~LikeAv~EL 67 (82)
T PF11212_consen 10 EHNVSDEQINELFQALTQNPLAAMATIQQLGIPQEKLQQLMAQVMQNPALIKEAVEEL 67 (82)
T ss_pred HcCCCHHHHHHHHHHHhhCHHHHHHHHHHcCCCHHHHHHHHHHHhcChHHHHHHHHHh
Confidence 45577888888888888888 4667899999999875 678998888877655
No 10
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=25.11 E-value=93 Score=29.37 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=39.2
Q ss_pred CCChHHHHHHHHhhccCCCcHHHHHHHHHhhCCCCCcchhhhHHHHHhcCCCc
Q 014732 1 MLSQEESGRVFEMLKSQEKPVEEIVSDLISTFPRHRHFVLCTTLSLLLQDKKA 53 (419)
Q Consensus 1 ML~~~e~~~Ll~lLse~~~tLEsi~~~F~~~F~k~~~F~vg~~L~~LLqd~dl 53 (419)
||+.+-...|+.+| +..+|+|+|..++...|+..+ +..+|-.|.+.+.+
T Consensus 26 ~l~~~~~~~L~~lL-dG~rt~~eI~~~l~~~~p~~~---v~~~L~~L~~~G~l 74 (193)
T TIGR03882 26 ALSGALYCQLAPLL-DGRRTLDEIIAALAGRFPAEE---VLYALDRLERRGYL 74 (193)
T ss_pred EEcchhHHHHHHHH-cCCCCHHHHHHHhhccCCHHH---HHHHHHHHHHCCCE
Confidence 46677788999999 458999999999999887444 77788888877733
No 11
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=20.64 E-value=1.4e+02 Score=23.24 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Q 014732 258 AAVRDLIAKALKGPLLPAQYEQVVVELAND 287 (419)
Q Consensus 258 ~~~r~Lm~kA~~~~Ls~~qqq~ll~~L~~d 287 (419)
.-+++...+|+.+|++++|.+.++...++.
T Consensus 5 ~~l~~Fa~rAfRRp~~~~e~~~~~~~~~~~ 34 (64)
T PF07637_consen 5 EILRRFARRAFRRPLTDEEVDRYLALYDSA 34 (64)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 458889999999999999999888766554
Done!