Query 014732
Match_columns 419
No_of_seqs 103 out of 114
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zoq_C CREB-binding protein, i 75.5 1.7 5.6E-05 31.4 2.4 32 260-292 3-34 (47)
2 1kbh_B CREB-binding protein, n 45.8 7.6 0.00026 29.2 1.3 33 259-292 9-41 (59)
3 2of5_A Death domain-containing 39.2 44 0.0015 27.9 5.3 79 268-346 18-105 (114)
4 2o71_A Death domain-containing 36.8 69 0.0024 26.7 6.1 76 268-343 18-102 (115)
5 1y88_A Hypothetical protein AF 30.0 19 0.00066 33.2 1.7 58 244-307 121-191 (199)
6 3q5w_A Protein CUT8; proteasom 28.9 70 0.0024 30.5 5.4 31 303-334 73-103 (245)
7 4fu3_A Regulation of nuclear P 27.0 69 0.0024 26.6 4.5 80 3-87 5-84 (135)
8 1vqr_A Hypothetical protein CJ 21.0 1.3E+02 0.0046 28.1 5.8 59 257-323 15-75 (297)
9 2of5_H Leucine-rich repeat and 17.5 69 0.0024 26.6 2.5 70 269-338 8-87 (118)
10 3m1t_A Putative phosphohydrola 17.3 57 0.0019 30.5 2.2 56 260-323 4-59 (275)
No 1
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=75.52 E-value=1.7 Score=31.40 Aligned_cols=32 Identities=38% Similarity=0.640 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhcCcchhh
Q 014732 260 VRDLIAKALKGPLLPAQYEQVVVELANDPKLVY 292 (419)
Q Consensus 260 ~r~Lm~kA~~~~Ls~~qqq~ll~~L~~dp~lv~ 292 (419)
.++|| +.++++=+++|||+++.-|+++|.|..
T Consensus 3 LqqLl-~tlksp~sp~qqqqvl~ILksnPqLMA 34 (47)
T 1zoq_C 3 LQDLL-RTLKSPSSPQQQQQVLNILKSNPQLMA 34 (47)
T ss_dssp HHHHH-HTCCSCCCHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHH-HHhcCCCCHHHHHHHHHHHHcCHHHHH
Confidence 34444 458899999999999999999987763
No 2
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=45.79 E-value=7.6 Score=29.23 Aligned_cols=33 Identities=39% Similarity=0.645 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcCcchhh
Q 014732 259 AVRDLIAKALKGPLLPAQYEQVVVELANDPKLVY 292 (419)
Q Consensus 259 ~~r~Lm~kA~~~~Ls~~qqq~ll~~L~~dp~lv~ 292 (419)
+...|| +.++++=+++|||+++.-|+++|.|..
T Consensus 9 aLqqLl-~tlksp~speqqqqvl~ILksNPqLMA 41 (59)
T 1kbh_B 9 ALQDLL-RTLKSPSSPQQQQQVLNILKSNPQLMA 41 (59)
T ss_dssp HHHHHH-HHHHSCTTTTCSTHHHHHHTTSHHHHH
T ss_pred HHHHHH-HHhcCCCCHHHHHHHHHHHHhCHHHHH
Confidence 455555 558888899999999999999987763
No 3
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=39.16 E-value=44 Score=27.92 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=59.2
Q ss_pred HcCCCCHHHHHHHHHHHhcCc-chhhhcCCCCCChhHHHHhCh----HHHHHHHHHhcC----CCChhHHHHHHhhCCCC
Q 014732 268 LKGPLLPAQYEQVVVELANDP-KLVYHCGLTPRKLPELVENNP----LIAVDVLTKLIN----SPEISEYYTVLVNMDMS 338 (419)
Q Consensus 268 ~~~~Ls~~qqq~ll~~L~~dp-~lv~~~gltp~~Lp~LVEnNP----~IAievLlkL~~----s~~~~eY~d~Lv~md~S 338 (419)
+.+.+++.+.+.|-+.+-.+. .+.+++|++...+..+-++|| .-+.++|.+-.. ..-......+|-.+++.
T Consensus 18 ~~~~~t~~~l~~Ia~~lG~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~ 97 (114)
T 2of5_A 18 LNSSPSDRQINQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVD 97 (114)
T ss_dssp TTSCCCHHHHHHHHHTCCSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCC
T ss_pred hcCCCCHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCC
Confidence 346778888888988898887 788889999999999999998 344555543321 22466788888888888
Q ss_pred hhHHHHHH
Q 014732 339 LHSMEVVN 346 (419)
Q Consensus 339 l~smEVVn 346 (419)
...+.-|.
T Consensus 98 ~~v~~~~~ 105 (114)
T 2of5_A 98 PSLLLHML 105 (114)
T ss_dssp THHHHHHC
T ss_pred HHHHHHHH
Confidence 87666543
No 4
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=36.82 E-value=69 Score=26.73 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=57.4
Q ss_pred HcCCCCHHHHHHHHHHHhcCc-chhhhcCCCCCChhHHHHhChH----HHHHHHHHhcC----CCChhHHHHHHhhCCCC
Q 014732 268 LKGPLLPAQYEQVVVELANDP-KLVYHCGLTPRKLPELVENNPL----IAVDVLTKLIN----SPEISEYYTVLVNMDMS 338 (419)
Q Consensus 268 ~~~~Ls~~qqq~ll~~L~~dp-~lv~~~gltp~~Lp~LVEnNP~----IAievLlkL~~----s~~~~eY~d~Lv~md~S 338 (419)
+.+.+++.+...|-+.+-.+. .+.+++|++...+..+-.+||. -+.++|.+-.. ..-......+|-.+++.
T Consensus 18 ~~~~~t~~~l~~Ia~~LG~~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~ 97 (115)
T 2o71_A 18 LNSSPSDRQINQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVD 97 (115)
T ss_dssp GGSCCCHHHHHHHHHHCCTTHHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCC
T ss_pred ccCCCCHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCC
Confidence 456788899999999998887 7888899999999999999983 44455543321 22456788888888888
Q ss_pred hhHHH
Q 014732 339 LHSME 343 (419)
Q Consensus 339 l~smE 343 (419)
...+.
T Consensus 98 ~~v~~ 102 (115)
T 2o71_A 98 PSLLL 102 (115)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 76543
No 5
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=30.01 E-value=19 Score=33.18 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=42.6
Q ss_pred cccccCCccCCCchHHHHHHHHHHHcC-----CCCHHHHHHHH-------HHHhc-CcchhhhcCCCCCChhHHHHh
Q 014732 244 LLWDHGMCADTSRGAAVRDLIAKALKG-----PLLPAQYEQVV-------VELAN-DPKLVYHCGLTPRKLPELVEN 307 (419)
Q Consensus 244 ~lwD~s~~~~~s~~~~~r~Lm~kA~~~-----~Ls~~qqq~ll-------~~L~~-dp~lv~~~gltp~~Lp~LVEn 307 (419)
..||+. .+...++++.++--- .|+++|.++|+ .++.. ||.++.+.|++.++-.+++|.
T Consensus 121 i~wd~p------~g~~L~~~i~~~~l~pi~~l~~~~~e~~~l~~~~~v~~k~~~~~~~~~l~~~gi~~~~~~~i~~~ 191 (199)
T 1y88_A 121 TGWSYP------EKEGIEVLLESKGLYPITILRIDKEVLDELVRAGLVFCRDVVSAGEEKLREIGLSAKKAREVIAE 191 (199)
T ss_dssp ECSSCS------TTTSHHHHHHTTTCCBGGGSSCCHHHHHHHHHTTCCBHHHHHHHCHHHHHHTTCCHHHHHHHHHH
T ss_pred EECCCC------chHHHHHHHHHcCCCCeEEEeeCHHHHhhhhcCCcEEEehhhhcChHHHHHcCCcHHHHHHHHHH
Confidence 357765 245789999988322 68899998874 34555 899999999998888777663
No 6
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=28.94 E-value=70 Score=30.52 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.7
Q ss_pred HHHHhChHHHHHHHHHhcCCCChhHHHHHHhh
Q 014732 303 ELVENNPLIAVDVLTKLINSPEISEYYTVLVN 334 (419)
Q Consensus 303 ~LVEnNP~IAievLlkL~~s~~~~eY~d~Lv~ 334 (419)
+||+.+|+|+.++. .+++.|.+..++++|-+
T Consensus 73 ~L~~~HPel~qeI~-~~~P~Psl~~al~~L~~ 103 (245)
T 3q5w_A 73 QCVEKHPDLARDIR-GILPAPSMDTCVETLRK 103 (245)
T ss_dssp HHHHHCTHHHHHHH-TTSCCCCHHHHHHHHHH
T ss_pred HHHHhCchHHHHHh-hcCCCCCHHHHHHHHHH
Confidence 78889999999885 77788888888887754
No 7
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=26.97 E-value=69 Score=26.60 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=49.4
Q ss_pred ChHHHHHHHHhhccCCCcHHHHHHHHHhhCCCCCcchhhhHHHHHhcCCCcCCchhHHHHHHHHHhhhcCCCCCCCCcHH
Q 014732 3 SQEESGRVFEMLKSQEKPVEEIVSDLISTFPRHRHFVLCTTLSLLLQDKKALNSTERLVAFAILHHSYCSQKPSANPFIS 82 (419)
Q Consensus 3 ~~~e~~~Ll~lLse~~~tLEsi~~~F~~~F~k~~~F~vg~~L~~LLqd~dlL~~~QRLia~yiLy~~Y~~e~~~~NPF~~ 82 (419)
+.+.+...|+-|+...++-.+++.-....-... =.+..++.--++.. .+.+||..+|++-+.-.+.....++|..
T Consensus 5 ~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a--~~iv~~i~~~l~~~---~~~~KL~~LYLindIl~ns~~~~~~y~~ 79 (135)
T 4fu3_A 5 SESALEKKLSELSNSQQSVQTLSLWLIHHRKHA--GPIVSVWHRELRKA---KSNRKLTFLYLANDVIQNSKRKGPEFTR 79 (135)
T ss_dssp CHHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGH--HHHHHHHHHHHHHS---CTTTHHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred CHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 567788888888877777777776666522211 12223333333333 5679999999988775544334466776
Q ss_pred HHHhh
Q 014732 83 LIINS 87 (419)
Q Consensus 83 vfi~~ 87 (419)
.|...
T Consensus 80 ~f~~~ 84 (135)
T 4fu3_A 80 EFESV 84 (135)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66543
No 8
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=20.98 E-value=1.3e+02 Score=28.07 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCcchhhhcCCCCC--ChhHHHHhChHHHHHHHHHhcCCC
Q 014732 257 GAAVRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPR--KLPELVENNPLIAVDVLTKLINSP 323 (419)
Q Consensus 257 ~~~~r~Lm~kA~~~~Ls~~qqq~ll~~L~~dp~lv~~~gltp~--~Lp~LVEnNP~IAievLlkL~~s~ 323 (419)
|...+.++.+.-+=|-.+.-..+|++.+.++ ..+.. ++-++|+..|.++..+| |+.||+
T Consensus 15 ~~~~~~~~~~~~~lp~~~~~~~~l~~~~~~~-------~~~~~~~~l~~~i~~Dp~Ls~~lL-r~aNS~ 75 (297)
T 1vqr_A 15 GDMNELLLKSVEVLPPLPDTVSKLRKYVSEA-------NSNIETMKVAEIISSDPLMTAKLL-QLANSP 75 (297)
T ss_dssp THHHHHHHHHTSSCCCCHHHHHHHHHHHHHC---------CCCHHHHHHHHHTCHHHHHHHH-HHHTSG
T ss_pred cchHHHHHhccccCCCCHHHHHHHHHHHcCC-------CCCCCHHHHHHHHHHCHHHHHHHH-HHHccc
Confidence 4678888888887777888888888888754 23566 89999999999999886 888886
No 9
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=17.54 E-value=69 Score=26.60 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=52.6
Q ss_pred cCCCCHHHHHHHHHHHhcCc-chhhhcCCCCCChhHHHHhChH----HHHHHHHHhcCCC-----ChhHHHHHHhhCCCC
Q 014732 269 KGPLLPAQYEQVVVELANDP-KLVYHCGLTPRKLPELVENNPL----IAVDVLTKLINSP-----EISEYYTVLVNMDMS 338 (419)
Q Consensus 269 ~~~Ls~~qqq~ll~~L~~dp-~lv~~~gltp~~Lp~LVEnNP~----IAievLlkL~~s~-----~~~eY~d~Lv~md~S 338 (419)
.++||+.+-..+-+.+-.|. .+..+.|++...+..+-..||. =+.++|..-.... -......+|..++..
T Consensus 8 ~~~lt~~~l~~ia~~lg~dWk~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~~Atv~~L~~aL~~~~r~ 87 (118)
T 2of5_H 8 TGFLTQSNLLSVAGRLGLDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQPGAVGLLVQALEQSDRQ 87 (118)
T ss_dssp TCCCCHHHHHHHHHTCCTTHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHTTCH
T ss_pred cCCCCHHHHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHcCcH
Confidence 57899999999999999998 7888899999999999999985 4555554332221 245667777777664
No 10
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=17.32 E-value=57 Score=30.51 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhcCcchhhhcCCCCCChhHHHHhChHHHHHHHHHhcCCC
Q 014732 260 VRDLIAKALKGPLLPAQYEQVVVELANDPKLVYHCGLTPRKLPELVENNPLIAVDVLTKLINSP 323 (419)
Q Consensus 260 ~r~Lm~kA~~~~Ls~~qqq~ll~~L~~dp~lv~~~gltp~~Lp~LVEnNP~IAievLlkL~~s~ 323 (419)
.++|+.+.-+=|--+.-..++++.+.++ ..+..++-++|+..|.++..+| |+.||+
T Consensus 4 ~~~l~~~~~~lP~lp~~~~~l~~~~~~~-------~~~~~~la~~I~~Dp~Ls~~lL-r~aNS~ 59 (275)
T 3m1t_A 4 SAALLQKVDELPRLPKAIAELLDVVNNE-------DSTVKAVSEKLSHDPVLSARVL-RLANSA 59 (275)
T ss_dssp CHHHHTTGGGSCCCCHHHHHHHHHHHCT-------TCCHHHHHHHHHTCHHHHHHHH-HHHTTC
T ss_pred HHHHHHhHhhCCCCcHHHHHHHHHHcCC-------CCCHHHHHHHHHHCHHHHHHHH-HHhcch
Confidence 4556666666666677777888887664 2356688999999999999887 888987
Done!