Query 014738
Match_columns 419
No_of_seqs 244 out of 1590
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02890 geranyl diphosphate s 100.0 8.2E-84 1.8E-88 656.2 39.9 416 1-419 1-422 (422)
2 TIGR02749 prenyl_cyano solanes 100.0 1.6E-69 3.6E-74 539.0 36.2 317 80-418 5-321 (322)
3 PLN02857 octaprenyl-diphosphat 100.0 1.7E-69 3.7E-74 551.5 34.3 322 79-419 95-416 (416)
4 TIGR02748 GerC3_HepT heptapren 100.0 3.4E-69 7.3E-74 536.5 35.5 313 80-419 4-319 (319)
5 CHL00151 preA prenyl transfera 100.0 1.2E-68 2.7E-73 533.3 35.1 319 79-419 5-323 (323)
6 PRK10888 octaprenyl diphosphat 100.0 3.4E-68 7.4E-73 529.5 35.6 314 81-419 6-323 (323)
7 COG0142 IspA Geranylgeranyl py 100.0 2.6E-67 5.6E-72 523.2 35.2 318 80-419 2-322 (322)
8 KOG0776 Geranylgeranyl pyropho 100.0 1.2E-63 2.6E-68 493.5 30.7 312 79-417 65-384 (384)
9 PRK10581 geranyltranstransfera 100.0 2.9E-61 6.4E-66 474.8 31.6 282 80-419 2-299 (299)
10 cd00685 Trans_IPPS_HT Trans-Is 100.0 4.1E-56 8.8E-61 430.8 28.7 254 104-417 3-259 (259)
11 PF00348 polyprenyl_synt: Poly 100.0 4.9E-55 1.1E-59 423.5 16.4 249 109-378 3-259 (260)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 2.3E-42 5E-47 328.8 26.4 235 124-417 1-236 (236)
13 KOG0777 Geranylgeranyl pyropho 100.0 2E-37 4.3E-42 284.6 20.6 269 105-396 21-293 (322)
14 KOG0711 Polyprenyl synthetase 100.0 6.5E-32 1.4E-36 259.1 26.8 297 105-419 38-347 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 8.5E-23 1.8E-27 190.2 26.7 226 161-414 13-241 (243)
16 PF07307 HEPPP_synt_1: Heptapr 97.8 0.00077 1.7E-08 63.4 14.5 102 159-268 34-136 (212)
17 PF00494 SQS_PSY: Squalene/phy 96.7 0.049 1.1E-06 52.7 14.9 141 228-396 88-229 (267)
18 TIGR01559 squal_synth farnesyl 96.7 0.097 2.1E-06 52.9 17.1 151 223-396 100-250 (336)
19 cd00683 Trans_IPPS_HH Trans-Is 96.5 0.39 8.5E-06 46.6 19.2 135 231-395 93-227 (265)
20 PLN02632 phytoene synthase 95.9 0.22 4.7E-06 50.4 14.8 139 231-396 140-280 (334)
21 TIGR03465 HpnD squalene syntha 95.7 0.3 6.4E-06 47.6 14.4 134 231-395 85-218 (266)
22 TIGR03464 HpnC squalene syntha 95.3 0.37 8E-06 46.9 13.3 133 232-395 87-219 (266)
23 cd00687 Terpene_cyclase_nonpla 91.8 11 0.00025 36.8 16.9 90 222-313 127-221 (303)
24 PRK12884 ubiA prenyltransferas 87.0 21 0.00045 34.8 14.4 156 161-339 40-198 (279)
25 COG1562 ERG9 Phytoene/squalene 85.1 28 0.00062 34.5 14.2 137 230-396 102-238 (288)
26 cd00868 Terpene_cyclase_C1 Ter 84.0 41 0.00088 32.2 17.4 89 224-313 122-215 (284)
27 PRK12882 ubiA prenyltransferas 79.6 45 0.00098 32.4 13.3 57 162-218 42-101 (276)
28 PRK09573 (S)-2,3-di-O-geranylg 62.0 1.4E+02 0.0031 29.0 12.3 55 162-216 41-98 (279)
29 PRK07566 bacteriochlorophyll/c 58.4 1.5E+02 0.0032 29.6 11.9 51 165-215 72-125 (314)
30 PRK12883 ubiA prenyltransferas 57.5 1.4E+02 0.0031 28.9 11.4 51 165-215 44-97 (277)
31 TIGR02056 ChlG chlorophyll syn 55.7 2E+02 0.0043 28.6 12.2 50 165-214 61-113 (306)
32 PF01040 UbiA: UbiA prenyltran 54.3 1.9E+02 0.0041 27.0 16.4 147 169-338 34-188 (257)
33 TIGR02748 GerC3_HepT heptapren 53.3 1.5E+02 0.0033 29.6 11.0 49 276-336 54-102 (319)
34 PRK10581 geranyltranstransfera 52.4 77 0.0017 31.5 8.7 61 161-221 206-278 (299)
35 PF06783 UPF0239: Uncharacteri 49.3 20 0.00043 28.9 3.1 26 283-308 14-39 (85)
36 PRK12878 ubiA 4-hydroxybenzoat 49.2 2.8E+02 0.0062 27.6 12.7 56 163-218 77-137 (314)
37 TIGR01474 ubiA_proteo 4-hydrox 48.9 2.7E+02 0.0058 27.2 13.0 57 162-218 44-105 (281)
38 PLN00012 chlorophyll synthetas 46.6 2.1E+02 0.0044 29.6 10.9 154 160-336 125-292 (375)
39 PRK10888 octaprenyl diphosphat 45.9 3.2E+02 0.007 27.3 13.4 50 275-336 54-103 (323)
40 PRK12872 ubiA prenyltransferas 44.7 3E+02 0.0065 26.6 11.4 33 297-340 173-205 (285)
41 PF03936 Terpene_synth_C: Terp 43.1 2.8E+02 0.006 26.1 10.8 87 225-312 138-229 (270)
42 TIGR01475 ubiA_other putative 35.8 4.2E+02 0.0091 25.7 12.0 49 163-211 41-94 (282)
43 cd00685 Trans_IPPS_HT Trans-Is 35.1 4.1E+02 0.0088 25.4 10.8 48 277-336 30-78 (259)
44 COG0382 UbiA 4-hydroxybenzoate 33.9 4.5E+02 0.0099 25.6 15.9 156 160-340 49-211 (289)
45 PF00348 polyprenyl_synt: Poly 33.3 4.4E+02 0.0095 25.2 11.3 53 272-336 20-72 (260)
46 PRK12871 ubiA prenyltransferas 32.4 5.1E+02 0.011 25.7 12.9 30 188-217 85-114 (297)
47 TIGR02749 prenyl_cyano solanes 28.6 5.2E+02 0.011 25.8 10.3 36 289-336 71-106 (322)
48 PRK06080 1,4-dihydroxy-2-napht 28.5 3.6E+02 0.0078 26.3 9.1 82 253-335 2-89 (293)
49 PRK13105 ubiA prenyltransferas 27.8 94 0.002 30.7 4.7 33 297-340 172-204 (282)
50 PRK13591 ubiA prenyltransferas 27.6 6.4E+02 0.014 25.3 13.5 31 299-340 193-223 (307)
51 CHL00151 preA prenyl transfera 24.5 2.8E+02 0.0062 27.7 7.6 23 160-182 197-219 (323)
52 PRK12870 ubiA 4-hydroxybenzoat 24.5 6.8E+02 0.015 24.5 13.3 56 163-218 51-111 (290)
53 PLN02857 octaprenyl-diphosphat 23.1 3.4E+02 0.0074 28.4 8.0 23 161-183 291-313 (416)
54 PRK07566 bacteriochlorophyll/c 21.8 1.4E+02 0.003 29.8 4.7 54 161-214 192-246 (314)
55 TIGR01476 chlor_syn_BchG bacte 21.1 1.6E+02 0.0036 28.6 5.0 51 162-212 165-216 (283)
56 TIGR01476 chlor_syn_BchG bacte 21.0 7.6E+02 0.016 23.9 11.4 50 165-214 45-97 (283)
57 PRK13105 ubiA prenyltransferas 20.4 1.6E+02 0.0035 29.1 4.7 59 160-218 162-221 (282)
58 PRK06080 1,4-dihydroxy-2-napht 20.2 4.6E+02 0.0099 25.5 8.0 56 159-214 169-225 (293)
No 1
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=8.2e-84 Score=656.21 Aligned_cols=416 Identities=77% Similarity=1.081 Sum_probs=377.2
Q ss_pred ChhhhhhhhhhcccccCcccccccCCCCCCcC----ccchhhhhccCCccccccccccccchhhhhcccccccccccccc
Q 014738 1 MLIYRGLSRISRISKKTSFGRRWLPSHPLLSG----ASHSAAAAAADSSVKVLGCREAYSWSLPALHGIRHQIHHQSSSV 76 (419)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 76 (419)
|+|+|+++||+ +.+++++||+++...+.+ ..+.+++++..+++++++||...+|.+..+|.+.+|++++..+.
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (422)
T PLN02890 1 MLLSRRVARIS---ATSGGGRGAYGCSQSLASSRAALLGRHGHPLSQSTSKVVGCRGTYSVSSRWLHGFQYQVRHQSSSL 77 (422)
T ss_pred CCcchHHHHHh---ccccccccchhhhhhhcccccccCCCCcccccCCCccccccccceeechhhhhhhhhhchhcccch
Confidence 89999999988 888899999998552111 22345667789999999999999999999999999999988777
Q ss_pred cc--CCchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhH
Q 014738 77 IE--LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALAT 154 (419)
Q Consensus 77 ~~--~d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~ 154 (419)
++ .++|+++.++|+.|+++|++.+.+..|.+.+++.|++..|.+|||+||+|++++++++|...++..+.+..+..+.
T Consensus 78 ~~~~~~~~~~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~ 157 (422)
T PLN02890 78 VEEQLDPFSLVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVAS 157 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhcc
Confidence 77 8999999999999999999999999999999999999877779999999999999999864321100000011123
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014738 155 ELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE 234 (419)
Q Consensus 155 ~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~ 234 (419)
+.+++++.+|+++||||+||||||||||++++|||+||+|.+||++.||++||||+++|+..++..+++++++.+++++.
T Consensus 158 ~~~~~~~~~AaavEliH~ASLVHDDIiD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~~ 237 (422)
T PLN02890 158 ELRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAVE 237 (422)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHcccccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCc
Q 014738 235 HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 314 (419)
Q Consensus 235 ~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~ 314 (419)
.+++||++|+.+..+...++++|++++++|||+||+++|++||+++|++++..+.+++||+++|+||||+||++||+|++
T Consensus 238 ~l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~ 317 (422)
T PLN02890 238 HLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTS 317 (422)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 99999999999887778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC
Q 014738 315 ASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 394 (419)
Q Consensus 315 ~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~ 394 (419)
+.+|||.++||++||+|+|+|+|++..+.+..++.+...+++++++++++|.++|++++|+.++++|.++|.++|+.||+
T Consensus 318 ~~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp~ 397 (422)
T PLN02890 318 ASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPE 397 (422)
T ss_pred hhhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988888888888888888999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhccC
Q 014738 395 NNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 395 ~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
+++++|..+|+.|..|++++++|+|
T Consensus 398 s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 398 TDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred CccccchHHHHHHHHHHHHHHhccC
Confidence 9877777789999999999999986
No 2
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=1.6e-69 Score=538.97 Aligned_cols=317 Identities=45% Similarity=0.710 Sum_probs=298.9
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014738 80 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 159 (419)
Q Consensus 80 d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
+.+..+.+++..|++++.+.+.+.+|.+.++..|++..| |||+||.|++++++++|+... ..+.
T Consensus 5 ~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~ll~~~~~~~~~~--------------~~~~ 68 (322)
T TIGR02749 5 SLFAPVEDDLYLLTDNLKSLVGARHPILYAAAEHLFSAG--GKRLRPAIVLLVSRATAEQQE--------------LTPR 68 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHCC--CchHHHHHHHHHHHHcCCCcc--------------ccHH
Confidence 356788999999999999999999999999999999988 999999999999999875321 1136
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 239 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~G 239 (419)
.+.+|+++||||+||||||||||+++.|||+||+|.+||+++|||+||||+++|+..++..+++++++.+++++.++++|
T Consensus 69 ~~~~A~avEliH~asLiHDDiiD~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G 148 (322)
T TIGR02749 69 HRRLAEITEMIHTASLVHDDVIDESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEG 148 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcccccCccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCC
Q 014738 240 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 319 (419)
Q Consensus 240 q~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK 319 (419)
|++|+.+..+...++++|++++.+|||+||++||++|++++|.+++.++.+++||.++|+||||+||++||+++++.+||
T Consensus 149 q~~~~~~~~~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK 228 (322)
T TIGR02749 149 EIKQGLNQFDSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGK 228 (322)
T ss_pred HHHHHHcccCCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCC
Confidence 99999877666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 014738 320 GSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDED 399 (419)
Q Consensus 320 ~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~ 399 (419)
|.++||++||+|+|++++++..+.+.+++.+...+++++++++++|.++|++++|+.++++|.++|.+.|+.+|+++
T Consensus 229 ~~g~Dl~~Gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~--- 305 (322)
T TIGR02749 229 PAGSDLMKGNLTAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSP--- 305 (322)
T ss_pred ChhHHHhCCCchHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCH---
Confidence 99999999999999999999888888888888888899999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHhcc
Q 014738 400 VTKSRRALLDLTHRVITRN 418 (419)
Q Consensus 400 ~~~~r~~L~~L~~~v~~R~ 418 (419)
.++.|.+|++++++|+
T Consensus 306 ---~~~~L~~l~~~~~~R~ 321 (322)
T TIGR02749 306 ---PREALKELVHFVLSRL 321 (322)
T ss_pred ---HHHHHHHHHHHHHhcC
Confidence 8999999999999996
No 3
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=1.7e-69 Score=551.48 Aligned_cols=322 Identities=42% Similarity=0.667 Sum_probs=300.8
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
.+.+..+.++++.|++.|.+.+....|.+.+++.|++..| |||+||+|++++++++|..... .+..+
T Consensus 95 ~~~~~~v~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKriRP~Lvll~a~a~g~~~g~-----------~~~~~ 161 (416)
T PLN02857 95 SELFEPVADDLQQLNDNLQSIVGAENPVLMSAAEQIFGAG--GKRMRPALVFLVSRATAELAGL-----------KELTT 161 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhCC--CccHhHHHHHHHHHHhccccCC-----------CcchH
Confidence 4456778999999999999999988999999999999988 9999999999999998631110 01124
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 238 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~ 238 (419)
+.+.+|+++||||+||||||||||++++|||+||+|.+||+++|||+||||+++|+..+++.+++++++.+++++..+++
T Consensus 162 ~~~~lAaaiEliH~ASLIHDDI~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~~~l~~ 241 (416)
T PLN02857 162 EHRRLAEITEMIHTASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVIKDFAS 241 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHCccccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccC
Q 014738 239 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 318 (419)
Q Consensus 239 Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~G 318 (419)
||++|+.+..+...++++|++++++|||+||+++|++||+++|.+++.++.+++||++||+||||+||++||+++++.+|
T Consensus 242 Gei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~~G 321 (416)
T PLN02857 242 GEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQLG 321 (416)
T ss_pred hHHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhC
Confidence 99999888777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 014738 319 KGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 398 (419)
Q Consensus 319 K~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~ 398 (419)
||.++||++||+|+|+|+|++..+.+.+++.+.+.+++++++++++|+++||+++|++++++|.++|++.|+.||+++
T Consensus 322 K~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp~~~-- 399 (416)
T PLN02857 322 KPAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLPRGA-- 399 (416)
T ss_pred CCcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCH--
Confidence 999999999999999999999888899999888888899999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHHHhccC
Q 014738 399 DVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 399 ~~~~~r~~L~~L~~~v~~R~~ 419 (419)
.++.|..|++++++|.+
T Consensus 400 ----~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 400 ----FRSSLEDMVDYNLERIY 416 (416)
T ss_pred ----HHHHHHHHHHHHHhccC
Confidence 89999999999999974
No 4
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=3.4e-69 Score=536.48 Aligned_cols=313 Identities=29% Similarity=0.502 Sum_probs=290.2
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014738 80 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 159 (419)
Q Consensus 80 d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
+.++.+.++++.|++.+.+.+.+..|.+.+++.|++..| |||+||.|+++++.++|.+. +.
T Consensus 4 ~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKriRp~L~ll~~~~~~~~~-----------------~~ 64 (319)
T TIGR02748 4 DIYSFLQKDIDSIEKELEKAVQAEHPVLSEASLHLLEAG--GKRIRPVFVLLAGKFGDYDL-----------------DA 64 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCCH-----------------HH
Confidence 457789999999999999999888889999999999988 99999999999999876432 36
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 239 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~G 239 (419)
+..+|+++||||+||||||||+|+|++|||+||+|.+||+++||++||||+++|+..+++.+++++++.+++++..+++|
T Consensus 65 ~~~~A~aiEliH~asLiHDDI~D~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G 144 (319)
T TIGR02748 65 IKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKDPRAHQILSHTIVEVCRG 144 (319)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCC
Q 014738 240 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 319 (419)
Q Consensus 240 q~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK 319 (419)
|.+|+.+..+...++++|++++++|||+||++||.+|++++|.+++.++.+++||+++|+||||+||++||+++++.+||
T Consensus 145 q~~~~~~~~~~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK 224 (319)
T TIGR02748 145 EIEQIKDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGK 224 (319)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCC
Confidence 99999887777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCcccHHHHHHhhhCc---hHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014738 320 GSLSDIRHGIITAPILFAMEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 396 (419)
Q Consensus 320 ~~~~Dl~~gk~TlPll~Al~~~~---~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 396 (419)
|.++||++||+|+|++++++..+ .+..++... ++++++.++++|.++|++++|+.++++|.++|.+.|+.||+++
T Consensus 225 ~~~~Dl~~gk~Tlp~l~al~~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~ 302 (319)
T TIGR02748 225 PAGGDLLQGNVTLPVLYAMEDPFLKKRIEQVLEET--TAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPDGR 302 (319)
T ss_pred ChhhHHhCCCchHHHHHHhcCcchhHHHHHHHcCC--CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 99999999999999999998543 233333322 5678999999999999999999999999999999999999998
Q ss_pred CcchHHHHHHHHHHHHHHHhccC
Q 014738 397 DEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 397 ~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
.++.|..+++++++|++
T Consensus 303 ------~~~~L~~l~~~~~~R~~ 319 (319)
T TIGR02748 303 ------AKKPLQEIAKYIGKRKY 319 (319)
T ss_pred ------HHHHHHHHHHHHHhccC
Confidence 89999999999999975
No 5
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=1.2e-68 Score=533.30 Aligned_cols=319 Identities=40% Similarity=0.651 Sum_probs=299.1
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
.+.+..+.+++..|++.+.+.+....|.+.++++|++..| |||+||.|++++++++|++.. ...
T Consensus 5 ~~~~~~~~~~l~~i~~~l~~~~~~~~~~l~~~~~~~~~~g--GKr~Rp~L~ll~~~~~~~~~~--------------~~~ 68 (323)
T CHL00151 5 SNLLTPIEEELLILEDNLKKLIGSGHPILYAAAKHLFSAG--GKRIRPAIVLLVAKATGGNME--------------IKT 68 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCcc--------------ccH
Confidence 5667889999999999999999888899999999999988 999999999999999986432 112
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 238 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~ 238 (419)
..+.+|+++||||+||||||||||++++|||+||+|.+||++.|||+||||+++|+..++...++++++.+++++..+++
T Consensus 69 ~~~~~A~aiEllH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (323)
T CHL00151 69 SQQRLAEITEIIHTASLVHDDVIDECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLNNLEVVKLISKVITDFAE 148 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccCccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccC
Q 014738 239 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 318 (419)
Q Consensus 239 Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~G 318 (419)
||.+|.....+...+.++|++++.+|||+||++||.+||+++|.+++..+.+++||.++|+||||+||++||+++++.+|
T Consensus 149 G~~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~G 228 (323)
T CHL00151 149 GEIRQGLVQFDTTLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLG 228 (323)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhC
Confidence 99999877666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 014738 319 KGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 398 (419)
Q Consensus 319 K~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~ 398 (419)
||.|+||++||+|+|++++++..+.+.+.+.+...++++++++++++.++|++++|+.++++|.++|.+.|+.||+++
T Consensus 229 K~~g~Dl~eGk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~-- 306 (323)
T CHL00151 229 KPIGSDLKNGNLTAPVLFALTQNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSS-- 306 (323)
T ss_pred CCchhhHhcCchHHHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCH--
Confidence 999999999999999999999888888888777778889999999999999999999999999999999999999988
Q ss_pred chHHHHHHHHHHHHHHHhccC
Q 014738 399 DVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 399 ~~~~~r~~L~~L~~~v~~R~~ 419 (419)
.++.|..+++++++|+.
T Consensus 307 ----~~~~L~~l~~~~~~R~~ 323 (323)
T CHL00151 307 ----AKDSLIEIANFIINRLN 323 (323)
T ss_pred ----HHHHHHHHHHHHHhccC
Confidence 89999999999999963
No 6
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=3.4e-68 Score=529.49 Aligned_cols=314 Identities=32% Similarity=0.510 Sum_probs=289.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHH
Q 014738 81 PFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 160 (419)
Q Consensus 81 ~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (419)
.+..+..+++.|++.|.+.+.+..|.+.++..|.+..| |||+||.|++++++++|++. +..
T Consensus 6 ~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~~--GKrlRp~l~ll~~~~~g~~~-----------------~~~ 66 (323)
T PRK10888 6 INELTAQDMAGVNAAILEQLNSDVQLINQLGYYIISGG--GKRIRPMIAVLAARAVGYQG-----------------NAH 66 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCCh-----------------HHH
Confidence 46788999999999999999888889999999999988 99999999999999987642 257
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Q 014738 161 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGE 240 (419)
Q Consensus 161 ~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq 240 (419)
+.+|+++||||+||||||||+|++++|||+||+|.+||+++|||+||||++.|+..++..++++++..+++++..+++||
T Consensus 67 ~~~A~avEllH~asLiHDDI~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq 146 (323)
T PRK10888 67 VTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGE 146 (323)
T ss_pred HHHHHHHHHHHHHHHHHcccccCCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCC
Q 014738 241 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 320 (419)
Q Consensus 241 ~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~ 320 (419)
.+|+.+..+...++++|++++.+|||+||++||.+|++++|.+++.++.++.||+++|+||||+||++||+++++.+|||
T Consensus 147 ~~d~~~~~~~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~ 226 (323)
T PRK10888 147 VLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKN 226 (323)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCC
Confidence 99998776667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcccHHHHHHhhhC-chHHHHHHccc---CChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014738 321 SLSDIRHGIITAPILFAMEEF-PQLRTVVEQGF---EDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 396 (419)
Q Consensus 321 ~~~Dl~~gk~TlPll~Al~~~-~~~~~~l~~~~---~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 396 (419)
.++||++||+|+|++++++.. +..+..+.... ...++++.+++++.++|++++++.++++|.++|.+.|+.+|+++
T Consensus 227 ~g~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~ 306 (323)
T PRK10888 227 VGDDLNEGKPTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTP 306 (323)
T ss_pred chhhhhcCCchHHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999999864 33333332222 23467899999999999999999999999999999999999998
Q ss_pred CcchHHHHHHHHHHHHHHHhccC
Q 014738 397 DEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 397 ~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
+++.|..+++++++|.+
T Consensus 307 ------~~~~L~~l~~~~~~R~~ 323 (323)
T PRK10888 307 ------WREALIGLAHIAVQRDR 323 (323)
T ss_pred ------HHHHHHHHHHHHHhCcC
Confidence 99999999999999974
No 7
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-67 Score=523.23 Aligned_cols=318 Identities=34% Similarity=0.516 Sum_probs=291.1
Q ss_pred CchhhHHHHHHHHHHHHHHhhh-hCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 80 DPFSLVADELSILAKRLRSMVV-AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 80 d~~~~i~~el~~v~~~l~~~v~-~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
+++..+.++++.|++.|.+.+. +.++.+.++..|.+.+| |||+||.+++++++++|.+... ..+
T Consensus 2 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~l~~a~~~~~~aG--GKrlRP~l~l~~~~~~~~~~~~-------------~~~ 66 (322)
T COG0142 2 DLLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAG--GKRLRPLLVLLAAEALGIDLET-------------GGN 66 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcC--CccHhHHHHHHHHHHcCCCccc-------------chh
Confidence 4567888999999999999998 78889999999999989 9999999999999999832210 024
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN--TEVVTLLATVVEHL 236 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~--~~v~~~ls~~~~~l 236 (419)
.+..+|++|||||++|||||||||+|++|||+||+|.+||+..|||+||||++.||..+++..+ +.++..+++++..+
T Consensus 67 ~~~~~aaavEliH~~SLiHDDvmD~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~ 146 (322)
T COG0142 67 DALDLAAAIELIHTASLIHDDLMDDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGL 146 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999988 89999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccc
Q 014738 237 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 316 (419)
Q Consensus 237 ~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~ 316 (419)
|+||.+|+.+..+. .|+++|++++++|||+||+++|.+||+++|++++..+.++.||+++|+||||+||++|++++++.
T Consensus 147 ~~GQ~lDl~~~~~~-~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~ 225 (322)
T COG0142 147 CGGQALDLAFENKP-VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEE 225 (322)
T ss_pred HHhHHHHHHccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHH
Confidence 99999999998776 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014738 317 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 396 (419)
Q Consensus 317 ~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 396 (419)
+||++|+|+++||.|+|++++++..+.-...+........+++++++++.++|+++++...++.|.++|.+.|+.+|+++
T Consensus 226 lGK~~g~Dl~~gK~T~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~ 305 (322)
T COG0142 226 LGKPVGSDLKEGKPTLPVLLALEKANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSE 305 (322)
T ss_pred hCCCcchHHHcCCchHHHHHHHHcCchhhHHHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 99999999999999999999999754321133333333339999999999999999999999999999999999999777
Q ss_pred CcchHHHHHHHHHHHHHHHhccC
Q 014738 397 DEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 397 ~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
.++.|.++++++++|.+
T Consensus 306 ------~~~~L~~la~~i~~R~~ 322 (322)
T COG0142 306 ------AKEALLELADFIIKRKY 322 (322)
T ss_pred ------HHHHHHHHHHHHHhccC
Confidence 99999999999999974
No 8
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.2e-63 Score=493.54 Aligned_cols=312 Identities=42% Similarity=0.600 Sum_probs=293.2
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhC--chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 156 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~--~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~ 156 (419)
.|....+..+++.+...+...+... ++.+..+.+|.+..+ |||+||.+|+++|+++|.+.
T Consensus 65 ~d~~~~~~~~~~~ln~~l~~~~~~~~~~~~i~~a~ry~~la~--gKr~rP~l~~~~~e~~~~g~---------------- 126 (384)
T KOG0776|consen 65 FDELSYMARKARSLNGALHYAVPLANEPLLISEAMRYLLLAG--GKRVRPLLCLAACELVGSGD---------------- 126 (384)
T ss_pred hhHHHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHhc--ccccCchhhhhHHHhccccc----------------
Confidence 6788889999999999999988765 456888888999988 99999999999999998322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 014738 157 RTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE 234 (419)
Q Consensus 157 ~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~ 234 (419)
...++.+|+++||||+|||||||| ||++++|||+||.|+.||+++|||+|||||++|+..++.+.|+.+++++++++.
T Consensus 127 ~~~q~~~A~i~EMIHtaSLIHDDv~~mD~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~~v~elm~~aI~ 206 (384)
T KOG0776|consen 127 ESSQRSLAEIVEMIHTASLIHDDVPCMDDADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLENPVVVELMASAIA 206 (384)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCcccccccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 137899999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccC---CC-CCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 014738 235 HLVTGETMQMTTSS---DQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 310 (419)
Q Consensus 235 ~l~~Gq~~dl~~~~---~~-~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~ 310 (419)
++++|++++....+ +. +..+++|+.++.+|||+|++.+|++|++++|.++++++.+++||+|+|++||+.||++||
T Consensus 207 dLv~ge~~~~~~~~~~~d~~~~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildf 286 (384)
T KOG0776|consen 207 DLVRGEFTQGLVAGEGLDLDDVGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDF 286 (384)
T ss_pred HHHHhhhhcccccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 99999999988873 33 347899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014738 311 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 390 (419)
Q Consensus 311 ~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 390 (419)
+...+.+||++|.|+..|+.|+|++|++++.|++.+.+.+.+.++.+.++..+++. +++.|..++++|.++|++.|+
T Consensus 287 tkss~elGK~ag~Dl~~g~lT~P~Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~---~v~~a~~la~~~~~~Al~~l~ 363 (384)
T KOG0776|consen 287 TKSSEELGKTAGKDLKAGKLTAPVLFALEKSPELREKLEREFSEPLDGFDADKAVP---GVALAKYLARRHNNKALEALQ 363 (384)
T ss_pred ccchhhcCcchhhhhhhccccccchhhhhhChHHHHHHHHhccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988888887 999999999999999999999
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHhc
Q 014738 391 SLPENNDEDVTKSRRALLDLTHRVITR 417 (419)
Q Consensus 391 ~lp~~~~~~~~~~r~~L~~L~~~v~~R 417 (419)
.||+++ +|++|++|+..+++|
T Consensus 364 ~~p~s~------ar~aL~~l~~~~~~r 384 (384)
T KOG0776|consen 364 SLPRSE------ARSALENLVLAVLTR 384 (384)
T ss_pred CCCCch------HHHHHHHHHHHHhcC
Confidence 999999 999999999999987
No 9
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=2.9e-61 Score=474.77 Aligned_cols=282 Identities=27% Similarity=0.394 Sum_probs=250.1
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014738 80 DPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 156 (419)
Q Consensus 80 d~~~~i~~el~~v~~~l~~~v~~~---~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~ 156 (419)
+....+...++.|++.+.+.+... ++.+.+++.|++..| |||+||.|++++++++|.+.
T Consensus 2 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~L~l~~~~~~g~~~---------------- 63 (299)
T PRK10581 2 DFPQQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLG--GKRLRPFLVYATGQMFGVST---------------- 63 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcC--cccHHHHHHHHHHHHhCCCH----------------
Confidence 334567788899999999888652 467999999999988 99999999999999998642
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCCh--------HHH
Q 014738 157 RTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT--------EVV 226 (419)
Q Consensus 157 ~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~--------~v~ 226 (419)
+....+|+++||||+|||||||| ||+|++|||+||+|.+||+..|||+||||++.|+..++....+ +++
T Consensus 64 -~~~~~~A~avEliH~aSLiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~ 142 (299)
T PRK10581 64 -NTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMI 142 (299)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHH
Confidence 25678999999999999999999 9999999999999999999999999999999999999875422 345
Q ss_pred HHHHHH--HHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHhh
Q 014738 227 TLLATV--VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQL 303 (419)
Q Consensus 227 ~~ls~~--~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~-~~~~~~l~~~G~~lG~AfQI 303 (419)
..++.+ +..++.||.+|+.+... ..+.++|++|+++|||+||++||.+|++++|.+ ++.++.+++||.++|+||||
T Consensus 143 ~~~~~~~~~~~l~~GQ~ld~~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI 221 (299)
T PRK10581 143 SELASASGIAGMCGGQALDLEAEGK-QVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQV 221 (299)
T ss_pred HHHHHhcccchhhHhhHHHHhccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 555654 56899999999987654 578999999999999999999999999999986 45789999999999999999
Q ss_pred hhhhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 014738 304 IDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHAN 383 (419)
Q Consensus 304 ~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~ 383 (419)
+||++|++++++.+||+.++|+++||+|+|+++++ ++++..+++|.+
T Consensus 222 ~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~---------------------------------e~a~~~a~~~~~ 268 (299)
T PRK10581 222 QDDILDVVGDTATLGKRQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLID 268 (299)
T ss_pred HHHHccccCChHHHCCCcchhhhcCCCCHHHHHHH---------------------------------HHHHHHHHHHHH
Confidence 99999999999999999999999999999999954 578899999999
Q ss_pred HHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 384 LAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 384 ~A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
+|.+.|+.+|+++. .++.|.+|++++++|+|
T Consensus 269 ~A~~~l~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 269 DARQSLDQLAAQSL-----DTSALEALANYIIQRDK 299 (299)
T ss_pred HHHHHHHhCcCCch-----hHHHHHHHHHHHHhccC
Confidence 99999999998771 37899999999999986
No 10
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=4.1e-56 Score=430.82 Aligned_cols=254 Identities=39% Similarity=0.575 Sum_probs=239.0
Q ss_pred chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 014738 104 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 183 (419)
Q Consensus 104 ~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~ 183 (419)
.+.+.++..|.+..| ||++||.+++++++++|++.. +.+..+|+++|++|+||||||||+|+
T Consensus 3 ~~~l~~~~~~~~~~~--GK~~Rp~l~~~~~~~~g~~~~----------------~~~~~la~aiEllh~asLIhDDI~D~ 64 (259)
T cd00685 3 VELLREALRYLLLAG--GKRLRPLLVLLAARALGGPEL----------------EAALRLAAAIELLHTASLVHDDVMDN 64 (259)
T ss_pred chHHHHHHHHHHHcC--CccHhHHHHHHHHHHhCCCch----------------HHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 456889999998878 999999999999999987530 26789999999999999999999999
Q ss_pred CCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHH
Q 014738 184 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN---TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 260 (419)
Q Consensus 184 s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~---~~v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~ 260 (419)
|++|||+||+|.+||+..|||+||+|++.++..++...+ +++++.+++++..+++||.+|+.+..+...++++|+++
T Consensus 65 s~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~ 144 (259)
T cd00685 65 SDLRRGKPTVHKVFGNATAILAGDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDTDVTEEEYLRI 144 (259)
T ss_pred CcccCCCCcHHHHhCcccHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999998877 78999999999999999999999877667899999999
Q ss_pred HhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHHHhhh
Q 014738 261 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 340 (419)
Q Consensus 261 i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~ 340 (419)
+.+|||+||+.+|.+|++++|++++..+.+++||+++|++|||+||++|++++++.+||+.++||++||+|||+++++
T Consensus 145 ~~~KT~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l-- 222 (259)
T cd00685 145 IRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL-- 222 (259)
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 014738 341 FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 417 (419)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R 417 (419)
+..++.|.++|...|+.+|.+. .++.|.++++++++|
T Consensus 223 ----------------------------------~~~~~~~~~~a~~~l~~~~~~~------~~~~l~~~~~~~~~r 259 (259)
T cd00685 223 ----------------------------------RELAREYEEKALEALKALPESP------AREALRALADFILER 259 (259)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHcC
Confidence 6889999999999999999887 789999999999887
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=4.9e-55 Score=423.53 Aligned_cols=249 Identities=33% Similarity=0.541 Sum_probs=214.3
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014738 109 SAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR 188 (419)
Q Consensus 109 ~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RR 188 (419)
+++.|++..| |||+||.|++++++++|++ .+.+..+|+++||||+||||||||+|+|++||
T Consensus 3 ~~~~~~~~~~--GK~~Rp~l~~~~~~~~~~~-----------------~~~~~~~a~avEliH~asLIhDDI~D~s~~RR 63 (260)
T PF00348_consen 3 EPARYYILRG--GKRIRPLLVLLAAEALGGD-----------------PEKAIPLAAAVELIHAASLIHDDIIDNSDLRR 63 (260)
T ss_dssp HHHHHHHHSS--SCHHHHHHHHHHHHHTTCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEET
T ss_pred HHHHHHhhCC--CccHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHHHHHHHhhhhhcccccCC
Confidence 4567777778 9999999999999999853 24789999999999999999999999999999
Q ss_pred CCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC----ChHH---HHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q 014738 189 GIGSLNFVMGNKLAVLAGDFLLSRACVALASLK----NTEV---VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 261 (419)
Q Consensus 189 G~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~----~~~v---~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i 261 (419)
|+||+|.+||++.|||+||||++.|+..++... +..+ ...+...+.....||..++.+... ..++++|++++
T Consensus 64 G~pt~~~~~G~~~Ail~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~-~~~~~~y~~i~ 142 (260)
T PF00348_consen 64 GKPTVHKKFGNAIAILAGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDK-DPTEEEYLEII 142 (260)
T ss_dssp TEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-STSHHHHHHHH
T ss_pred CCccccccccccchhhhchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccc-cccHHHHHHHH
Confidence 999999999999999999999999999999877 2333 344444455555667777766544 78999999999
Q ss_pred hhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHHHhhhC
Q 014738 262 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF 341 (419)
Q Consensus 262 ~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~ 341 (419)
.+|||+||++||++|++++|.+++..+.+++||+++|+||||+||++|++++++..||+.++||++||+|+|++++++..
T Consensus 143 ~~KTg~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~ 222 (260)
T PF00348_consen 143 RLKTGSLFALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERA 222 (260)
T ss_dssp HHHTHHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ch-HHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHH
Q 014738 342 PQ-LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELA 378 (419)
Q Consensus 342 ~~-~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a 378 (419)
+. .+.++.. .....+.+.+.+.+..++.+++++..+
T Consensus 223 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 223 REELRELLQE-AYGKEDSEEALEIIAQTGALEYTRKFM 259 (260)
T ss_dssp HHHHHHHHHH-HHHHSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHH-HHcccchHHHHHHHHHHHHHHHHHhhc
Confidence 44 4445443 334446677888888888888887765
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=2.3e-42 Score=328.83 Aligned_cols=235 Identities=40% Similarity=0.603 Sum_probs=212.8
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhc-cCHHHH
Q 014738 124 FRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV-MGNKLA 202 (419)
Q Consensus 124 ~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~-~G~~~A 202 (419)
+||.+++++++++|+.. +.+..+++++|+||++++|||||+|++..|||+|++|.+ ||+..|
T Consensus 1 ~r~~~~~~~~~~~~~~~-----------------~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~~a 63 (236)
T cd00867 1 SRPLLVLLLARALGGDL-----------------EAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALA 63 (236)
T ss_pred CcHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHhHH
Confidence 59999999999998642 367899999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCC
Q 014738 203 VLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 282 (419)
Q Consensus 203 Vl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~ 282 (419)
+++||++++.++..++....+++.+.+++.+..+++||.+|+.+..+...|+++|++++++|||++|+.+|..++++++.
T Consensus 64 i~~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~ 143 (236)
T cd00867 64 ILAGDYLLARAFQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA 143 (236)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc
Confidence 99999999999999998888889999999999999999999988765578999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHH
Q 014738 283 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIAL 362 (419)
Q Consensus 283 ~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~ 362 (419)
+++..+.+++||.++|+||||.||++|+++|.+.+|| .++||++||+|+|++++
T Consensus 144 ~~~~~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~------------------------- 197 (236)
T cd00867 144 DDEQAEALKDYGRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA------------------------- 197 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH-------------------------
Confidence 9999999999999999999999999999999999999 99999999999999996
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 014738 363 EYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 417 (419)
Q Consensus 363 ~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R 417 (419)
++.+.++.+++.+.+..+++... ..+..+..++..+.+|
T Consensus 198 ------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~r 236 (236)
T cd00867 198 ------------RERAAEYAEEAYAALEALPPSLP----RARRALIALADFLYRR 236 (236)
T ss_pred ------------HHHHHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHHHHhC
Confidence 45666677777777777765541 1567788888887765
No 13
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2e-37 Score=284.57 Aligned_cols=269 Identities=21% Similarity=0.294 Sum_probs=241.2
Q ss_pred hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014738 105 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 184 (419)
Q Consensus 105 p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 184 (419)
..+-++-.|++..+ ||.+|--|.+.+-+.+..+. ++..-+..++||+|++||+.|||.|++
T Consensus 21 ~ill~Py~yilq~P--GKqfR~~L~~afNhwl~~P~-----------------dkLaii~~ivemLHNsSLLIDDIEDNs 81 (322)
T KOG0777|consen 21 SILLKPYNYILQKP--GKQFRLNLIVAFNHWLNLPK-----------------DKLAIISQIVEMLHNSSLLIDDIEDNS 81 (322)
T ss_pred HHHhchHHHHHhCc--hHHHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHHHHhccceeeccccccc
Confidence 35677788999877 99999999999999987542 255678899999999999999999999
Q ss_pred CCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCHHHHHHHHhh
Q 014738 185 DTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYY 263 (419)
Q Consensus 185 ~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~~~yl~~i~~ 263 (419)
..|||.|++|..||+...|+++.|++.+|++.+..+..|..+.+|.+-+.+++.||.+|+.|+... +++.++|..|+-.
T Consensus 82 ~LRRG~pvaHsIyGvpStINtANY~yFlalekV~qLdhP~a~kifteqLleLHrGQGldIYWRD~~tcPtee~Yk~Mv~~ 161 (322)
T KOG0777|consen 82 PLRRGQPVAHSIYGVPSTINTANYMYFLALEKVSQLDHPNAIKIFTEQLLELHRGQGLDIYWRDFLTCPTEEMYKNMVMN 161 (322)
T ss_pred hhhcCCcchhhhccCcchhhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCcceeeeccCcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997654 6789999999999
Q ss_pred hhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHHHhhhCc-
Q 014738 264 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP- 342 (419)
Q Consensus 264 KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~- 342 (419)
|||.||.++.++.-.++...++. ..+-.-+|+.|||+||++++...+..-.|..+.|+.|||.++|+++|+...+
T Consensus 162 KTGGLF~La~rLMqlfS~~kedl----~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~q 237 (322)
T KOG0777|consen 162 KTGGLFRLALRLMQLFSHHKEDL----VPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKGQ 237 (322)
T ss_pred hcccHHHHHHHHHHHHHhcchhH----HHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCCc
Confidence 99999999999999998665554 4556789999999999999988777778999999999999999999997644
Q ss_pred --hHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014738 343 --QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 396 (419)
Q Consensus 343 --~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 396 (419)
++..++.....+-+-...++.++++.|+++|++....+...+|...++....++
T Consensus 238 ~~Qvl~ILrqRT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~Np 293 (322)
T KOG0777|consen 238 TEQVLRILRQRTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGENP 293 (322)
T ss_pred hHHHHHHHHHhhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 466677777666666678999999999999999999999999999999988887
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.5e-32 Score=259.09 Aligned_cols=297 Identities=19% Similarity=0.151 Sum_probs=239.5
Q ss_pred hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014738 105 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 184 (419)
Q Consensus 105 p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 184 (419)
+.+.....|... | ||..|+..++.+.+++..+.. ..++....+..+++.+|++++..||-|||||+|
T Consensus 38 ~~~~~~L~yN~~-G--GK~nRgl~vv~s~~~L~~~~~----------l~~~~~~~a~~lGw~vElLQaffLiaDDIMDnS 104 (347)
T KOG0711|consen 38 EWLKEVLDYNVI-G--GKLNRGLSVVDSFKALVEPRK----------LDEEELQLALILGWCVELLQAFFLVADDIMDNS 104 (347)
T ss_pred HHHHHHHhccCc-c--cccccchhHHHHHHHhcCccC----------CCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 457777778754 7 999999999999999976432 123455678889999999999999999999999
Q ss_pred CCCCCCCcchhccCH-HHHHHHHHHHHHHHHHHHHc----C-CChHHHHHHHHHHHHHHHHHHHhhcccC--CCCCCHHH
Q 014738 185 DTRRGIGSLNFVMGN-KLAVLAGDFLLSRACVALAS----L-KNTEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMDY 256 (419)
Q Consensus 185 ~~RRG~pt~h~~~G~-~~AVl~GD~Lla~A~~~la~----~-~~~~v~~~ls~~~~~l~~Gq~~dl~~~~--~~~~s~~~ 256 (419)
.+|||+|||+.+-|. -.|||-+-+|-+.-..+|.. . ..-++++.+.++...++.|++++-.... -...|++.
T Consensus 105 ~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev~f~T~lGdllt~~~~~~~ls~fsl~~ 184 (347)
T KOG0711|consen 105 KTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEVTFQTELGDLLTTPEGNKDLSKFSLEK 184 (347)
T ss_pred cccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhhhccccCcccchhHhhhhHHH
Confidence 999999999999999 57888776666544455542 1 2357889999999999999666543322 12478999
Q ss_pred HHHHHhhhhhch-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHH
Q 014738 257 YMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 334 (419)
Q Consensus 257 yl~~i~~KTasL-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPl 334 (419)
|..|+.+|||.+ |.+|.++|.+++| ...+.......+-..+|..||++||+||++||++.+|| .|+||.++|+||.+
T Consensus 185 y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fgDp~vtgk-iGtDIqDnKCsWlv 263 (347)
T KOG0711|consen 185 YVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFGDPEVTGK-IGTDIQDNKCSWLV 263 (347)
T ss_pred HHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcCChhhcCC-CCCccccCceeeeh
Confidence 999999999999 9999999999999 45666777899999999999999999999999999999 58999999999999
Q ss_pred HHHhhh-CchHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 014738 335 LFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 411 (419)
Q Consensus 335 l~Al~~-~~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~L~ 411 (419)
.+|++. .+++.+++...+. +++.++.+..+..+.+--+.-.+.-.....+....|+.++.+.. ..+..+..++
T Consensus 264 ~~al~~~~~eq~~~l~~~yg~~~~~~v~~vk~ly~el~l~~~f~~yE~~~~~~Ik~~I~~~~~~~~----~~~~v~t~fl 339 (347)
T KOG0711|consen 264 VKALQRASAEQYKILFENYGKPEAEAVAKVKALYKELHLPALFIEYEEGSYKKIKKLISQVDEDTG----VKVKVGTSFL 339 (347)
T ss_pred HHHHhhcCHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHccCCCc----chhhhHHHHH
Confidence 999997 4678888877665 45678888888877776665556666666677777777766652 2566777899
Q ss_pred HHHHhccC
Q 014738 412 HRVITRNK 419 (419)
Q Consensus 412 ~~v~~R~~ 419 (419)
..+.+|+|
T Consensus 340 ~kiykr~k 347 (347)
T KOG0711|consen 340 NKIYKRSK 347 (347)
T ss_pred HHHHhhcC
Confidence 99998875
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.92 E-value=8.5e-23 Score=190.22 Aligned_cols=226 Identities=31% Similarity=0.437 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhc---cCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 014738 161 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV---MGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 237 (419)
Q Consensus 161 ~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~---~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~ 237 (419)
..++.++|.+|+++++||||+|++..|+|.|+++.. +|...+++.|++++..++..+.....+.+...+.+.+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEALEILAEALLDLL 92 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998 99999999999999999999988777888999999999999
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCcccc
Q 014738 238 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 317 (419)
Q Consensus 238 ~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~ 317 (419)
.|+..|+.+..+..++.++|+.+.+.|||.++...|..++...+.+....+.+..+|.++|++||+.||+.||..+.+..
T Consensus 93 ~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~ 172 (243)
T cd00385 93 EGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAERG 172 (243)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 99999999876556899999999999999999999999998888877788899999999999999999999998775331
Q ss_pred CCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014738 318 GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 397 (419)
Q Consensus 318 GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 397 (419)
+|+.|+|.+++.+......+. ..+..+++++.+...+..+.+++.+.+..+.....
T Consensus 173 ---------~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (243)
T cd00385 173 ---------EGKCTLPVLYALEYGVPAEDL---------------LLVEKSGSLEEALEELAKLAEEALKELNELILSLP 228 (243)
T ss_pred ---------CCchHHHHHHHHHhCChhhHH---------------HHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 589999999988754321111 16778889999999999999999999888766531
Q ss_pred cchHHHHHHHHHHHHHH
Q 014738 398 EDVTKSRRALLDLTHRV 414 (419)
Q Consensus 398 ~~~~~~r~~L~~L~~~v 414 (419)
.....+...+..+
T Consensus 229 ----~~~~~~~~~~~~~ 241 (243)
T cd00385 229 ----DVPRALLALALNL 241 (243)
T ss_pred ----HHHHHHHHHHHHH
Confidence 1445555555443
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=97.78 E-value=0.00077 Score=63.44 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 238 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~ 238 (419)
+....+.++-++|+|...||.|-. +..+.+...-. -...||+|||.=++-+.+||..++..+++.+++++..+.+
T Consensus 34 ~~~~~~~a~~LVq~aLDtHd~V~~-~~~~~~~~~k~----RQLtVLAGDy~S~~yY~lLA~~~~i~li~~ls~aI~eiNE 108 (212)
T PF07307_consen 34 EAERYALATMLVQIALDTHDEVDN-AGDESEESSKE----RQLTVLAGDYYSGLYYQLLAESGDISLIRALSEAIKEINE 108 (212)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc-ccccccHHHHh----hhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 567789999999999999999976 33333222222 2579999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHh-hhhhch
Q 014738 239 GETMQMTTSSDQRCSMDYYMQKTY-YKTASL 268 (419)
Q Consensus 239 Gq~~dl~~~~~~~~s~~~yl~~i~-~KTasL 268 (419)
....=-... ..+.++|++.+. -+|+-+
T Consensus 109 ~K~~ly~~~---~~~~e~~~~~~~~ies~l~ 136 (212)
T PF07307_consen 109 LKMSLYQKK---KETAEEYLESVVTIESALF 136 (212)
T ss_pred HHHHHHHhh---hCCHHHHHHHHHHHHHHHH
Confidence 986554332 246777776543 344433
No 17
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=96.74 E-value=0.049 Score=52.75 Aligned_cols=141 Identities=20% Similarity=0.167 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q 014738 228 LLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 307 (419)
Q Consensus 228 ~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~ 307 (419)
+-...+..+++|...|+.... ..|.+++..-++.-+|++..+.+.+...- .+. ..+..++.++|.|+|+.|=+
T Consensus 88 l~~~~l~~li~~~~~dl~~~~--~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~nil 160 (267)
T PF00494_consen 88 LPREPLLELIDGMEMDLEFTP--YETFADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTNIL 160 (267)
T ss_dssp HHHHHHHHHHHHHHHCTT-S----SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcccccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHHHH
Confidence 344567889999999987643 45899999988888888877766655331 222 45677889999999999988
Q ss_pred hccccCccccCCCCccc-cccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 014738 308 LDFTGTSASLGKGSLSD-IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 386 (419)
Q Consensus 308 lD~~g~~~~~GK~~~~D-l~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~ 386 (419)
.|+ +.| +..|++-+|.=..-+..=...+++... ...+.+..+ +......++.+.++|.
T Consensus 161 Rd~-----------~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~-~~~~~~~~~---------~~~~~~~A~~~l~~a~ 219 (267)
T PF00494_consen 161 RDI-----------PEDALRRGRIYLPLDDLRRFGVTPEDLLAGR-PRSERLRAL---------IRELAARARAHLDEAR 219 (267)
T ss_dssp HTH-----------HHH-HHTT---S-HHHHHHTTSSHHHHHHHG--GGHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHh-----------HHHHHhcccccCCchhHHHcCCCHHHHHhcc-cCCHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 887 457 788999888766443321222332222 111113322 3455688899999999
Q ss_pred HHhccCCCCC
Q 014738 387 AAIDSLPENN 396 (419)
Q Consensus 387 ~~L~~lp~~~ 396 (419)
..+..+|+..
T Consensus 220 ~~~~~l~~~~ 229 (267)
T PF00494_consen 220 AGLSALPPPR 229 (267)
T ss_dssp HGGGGS--TT
T ss_pred HHHHHcCCHh
Confidence 9999996665
No 18
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=96.70 E-value=0.097 Score=52.92 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Q 014738 223 TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQ 302 (419)
Q Consensus 223 ~~v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQ 302 (419)
+...+.+.+.+..|..|..+++........|.++|..-+++=-|.--.+.+.+-+. +|...+......+++..+|+|+|
T Consensus 100 ~~~~~~I~~~~~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~aLQ 178 (336)
T TIGR01559 100 PKYQEVIADITRRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGLFLQ 178 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHHHHH
Confidence 35667777888899999988876542212688888877776655544444444332 23222211223678999999999
Q ss_pred hhhhhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHH
Q 014738 303 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 382 (419)
Q Consensus 303 I~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~ 382 (419)
+.|=+.|+. .|+.+|++=||.=..-+......++. .++.-+.+.. .+++-...|..|.
T Consensus 179 lTNIlRDv~-----------ED~~~GR~YlP~e~l~~~g~~~~dl~-----~~~~~~~~~~------~l~~lv~~A~~~~ 236 (336)
T TIGR01559 179 KTNIIRDYL-----------EDINEGRMFWPREIWSKYAKKLGDFK-----KPENSDKALQ------CLNELVTNALHHA 236 (336)
T ss_pred HHHHHHHHH-----------hHHhCCCCCCCHHHHHHcCCCHHHhc-----CccccHHHHH------HHHHHHHHHHHHH
Confidence 999999973 56777888888643222222222221 1222222222 2344557788888
Q ss_pred HHHHHHhccCCCCC
Q 014738 383 NLAAAAIDSLPENN 396 (419)
Q Consensus 383 ~~A~~~L~~lp~~~ 396 (419)
+.|...+..+++..
T Consensus 237 ~~al~yl~~l~~~~ 250 (336)
T TIGR01559 237 TDCLTYLSRLRDQS 250 (336)
T ss_pred HHHHHHHHhCCCcc
Confidence 89999888886654
No 19
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=96.46 E-value=0.39 Score=46.59 Aligned_cols=135 Identities=20% Similarity=0.212 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 014738 231 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 310 (419)
Q Consensus 231 ~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~ 310 (419)
..+..+++|..+|+... ...|++++...++.-.|+...+.+.+. +.... +....++.++|+|+|+.|=+.|+
T Consensus 93 ~~~~~li~g~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i~---~~~~~---~~~~~~A~~lG~AlqltnilRdv 164 (265)
T cd00683 93 EPFRDLLAGMAMDLDKR--RYETLDELDEYCYYVAGVVGLMLLRVF---GASSD---EAALERARALGLALQLTNILRDV 164 (265)
T ss_pred HHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHHhHHHHHHHHHHHh---CCCCC---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999998753 346788888877776666655555433 32122 23467899999999999988887
Q ss_pred ccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014738 311 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 390 (419)
Q Consensus 311 ~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 390 (419)
+.|+..|++.+|.=..-+.+-...+++... ..+.+..+ +.+....|+.|...|...+.
T Consensus 165 -----------~eD~~~gR~YlP~d~l~~~gv~~~~l~~~~--~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~ 222 (265)
T cd00683 165 -----------GEDARRGRIYLPREELARFGVTLEDLLAPE--NSPAFRAL---------LRRLIARARAHYREALAGLA 222 (265)
T ss_pred -----------HHHHccCCCcCCHHHHHHcCCCHHHHcCCC--CCHHHHHH---------HHHHHHHHHHHHHHHHHhHH
Confidence 356788899988765433322222333211 12222222 34455778999999999999
Q ss_pred cCCCC
Q 014738 391 SLPEN 395 (419)
Q Consensus 391 ~lp~~ 395 (419)
.+|..
T Consensus 223 ~lp~~ 227 (265)
T cd00683 223 ALPRR 227 (265)
T ss_pred hCCHh
Confidence 99854
No 20
>PLN02632 phytoene synthase
Probab=95.95 E-value=0.22 Score=50.39 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHhhhhhhh
Q 014738 231 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVL 308 (419)
Q Consensus 231 ~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~--~~~~~~l~~~G~~lG~AfQI~DD~l 308 (419)
..+..+++|..+|+... ...|++++..-++.--|.+..+++.+ ++..+ ....+.+...+.++|+|+|+.|=+.
T Consensus 140 ~~~~~li~g~~~Dl~~~--~~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILR 214 (334)
T PLN02632 140 QPFRDMIEGMRMDLVKS--RYENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILR 214 (334)
T ss_pred HHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999998753 24578888887777777776666554 23222 1223456778999999999999888
Q ss_pred ccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 014738 309 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 388 (419)
Q Consensus 309 D~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~ 388 (419)
|+ +.|+..|++-+|.=..-+..=...+++... .+ +.+..+ +.+-...++.|.++|...
T Consensus 215 Dv-----------~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~-~~-~~~~~l---------~~~~~~~Ar~~~~~a~~~ 272 (334)
T PLN02632 215 DV-----------GEDARRGRVYLPQDELAQFGLTDEDIFAGK-VT-DKWRAF---------MKFQIKRARMYFAEAEEG 272 (334)
T ss_pred HH-----------HHHHhCCceeCCHHHHHHcCCCHHHHhcCC-CC-HHHHHH---------HHHHHHHHHHHHHHHHHh
Confidence 87 467888999888654333221222233221 11 122221 233336788899999999
Q ss_pred hccCCCCC
Q 014738 389 IDSLPENN 396 (419)
Q Consensus 389 L~~lp~~~ 396 (419)
+..+|...
T Consensus 273 l~~lp~~~ 280 (334)
T PLN02632 273 VSELDPAS 280 (334)
T ss_pred HhhCCHHh
Confidence 99888654
No 21
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.75 E-value=0.3 Score=47.56 Aligned_cols=134 Identities=17% Similarity=0.101 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 014738 231 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 310 (419)
Q Consensus 231 ~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~ 310 (419)
..+..+++|...|+... ...|.+++..-++.-.|++..+.+.+ ++..++ ....++.++|.|+|+.|=+.|+
T Consensus 85 ~~~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~~----~~~~~a~~lG~AlqltnilRdv 155 (266)
T TIGR03465 85 EDFLEVIDGMEMDLEQT--RYPDFAELDLYCDRVAGAVGRLSARI---FGATDA----RTLEYAHHLGRALQLTNILRDV 155 (266)
T ss_pred HHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCh----hHHHHHHHHHHHHHHHHHHHHh
Confidence 34678889999998754 34688888888887777777766654 332322 3467889999999999988887
Q ss_pred ccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014738 311 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 390 (419)
Q Consensus 311 ~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 390 (419)
+.|+..|++.+|.=..-+.+-...++.... . .+.+..+ +.+-...++.|.++|...+.
T Consensus 156 -----------~eD~~~gR~ylP~~~l~~~gv~~~~l~~~~-~-~~~~~~~---------~~~l~~~A~~~l~~a~~~~~ 213 (266)
T TIGR03465 156 -----------GEDARRGRIYLPAEELQRFGVPAADILEGR-Y-SPALAAL---------CRFQAERARAHYAEADALLP 213 (266)
T ss_pred -----------HHHHhCCCeecCHHHHHHcCCCHHHhcCCC-C-CHHHHHH---------HHHHHHHHHHHHHHHHHhhh
Confidence 356788999988755433322222222221 1 1222222 23444668888888888888
Q ss_pred cCCCC
Q 014738 391 SLPEN 395 (419)
Q Consensus 391 ~lp~~ 395 (419)
.+|..
T Consensus 214 ~~p~~ 218 (266)
T TIGR03465 214 ACDRR 218 (266)
T ss_pred hCCHh
Confidence 88854
No 22
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.30 E-value=0.37 Score=46.95 Aligned_cols=133 Identities=10% Similarity=-0.012 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 014738 232 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 311 (419)
Q Consensus 232 ~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~ 311 (419)
.+..+++|..+|+... ...|.+++..-++.-.|++..+++.+ ++..+++ ...++.++|.|+|+.|=+.|+
T Consensus 87 ~~~~li~~~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl- 156 (266)
T TIGR03464 87 PFLDLLDAFRQDVVVT--RYATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV- 156 (266)
T ss_pred HHHHHHHHHHHhccCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh-
Confidence 4667888998888654 24678888887777777776666543 3333333 246788999999999988886
Q ss_pred cCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 014738 312 GTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 391 (419)
Q Consensus 312 g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~ 391 (419)
+.|+..|++.+|.=..-+.+=...+++... ..+.+..+ +.+....|+.|.++|...+..
T Consensus 157 ----------~eD~~~gR~YLP~~~l~~~Gv~~edl~~~~--~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~~ 215 (266)
T TIGR03464 157 ----------GVDYRKGRVYLPRDDLARFGVSEEDLAAGR--ATPALREL---------MAFEVSRTRALLDRGAPLAAR 215 (266)
T ss_pred ----------HHHHhcCCccCCHHHHHHcCCCHHHHhcCC--CCHHHHHH---------HHHHHHHHHHHHHHHHHhHHh
Confidence 456778899888654333221222333221 11222222 344456788999999999999
Q ss_pred CCCC
Q 014738 392 LPEN 395 (419)
Q Consensus 392 lp~~ 395 (419)
+|..
T Consensus 216 lp~~ 219 (266)
T TIGR03464 216 VDGR 219 (266)
T ss_pred CCHh
Confidence 9854
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=91.79 E-value=11 Score=36.78 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcC--CCHHHHH--HHHHHHHH
Q 014738 222 NTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--LAFDYGKN 296 (419)
Q Consensus 222 ~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag--~~~~~~~--~l~~~G~~ 296 (419)
.+.....|.+.+...+.|...+..+.. ...+|+++|+++=..-.|..+..++ +-...| .++++.+ .+..+-..
T Consensus 127 ~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l--~~~~~g~~lp~~~~~~~~~~~l~~~ 204 (303)
T cd00687 127 SAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGL--SEFIGGPEVPAAVRLDPVMRALEAL 204 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHHH--HHHhcCCCCCHHHHhChHHHHHHHH
Confidence 366778888888899999988865543 2347999999765444455443222 222223 3444333 36777888
Q ss_pred HHHHHhhhhhhhccccC
Q 014738 297 LGLAYQLIDDVLDFTGT 313 (419)
Q Consensus 297 lG~AfQI~DD~lD~~g~ 313 (419)
.+...-+.||+..|..+
T Consensus 205 ~~~~~~l~NDl~S~~KE 221 (303)
T cd00687 205 ASDAIALVNDIYSYEKE 221 (303)
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 88899999999999543
No 24
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=86.98 E-value=21 Score=34.80 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCC---CCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 014738 161 QCIAEITEMIHVASLLHDDVLDDAD---TRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 237 (419)
Q Consensus 161 ~~lA~avEliH~AsLIHDDIiD~s~---~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~ 237 (419)
.-...++=++|.+..+..|+.|-+. .|..+|-...+...+.|...+=.+...++....-+ ++...-. . +..+.
T Consensus 40 ~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l-~~~~~~~-~--~~~~~ 115 (279)
T PRK12884 40 LLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLI-SPLAFLV-V--ILVSV 115 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH-H--HHHHH
Confidence 3344566789999999999977432 36677777777777888777766665554332222 2221111 0 11111
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCcccc
Q 014738 238 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 317 (419)
Q Consensus 238 ~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~ 317 (419)
.+=..-...+.. .-..+.. .|..++.+...|+...+......=.+.-+.--..+.+++..|+.|..+
T Consensus 116 ~~~~Ys~~lK~~--~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~----- 182 (279)
T PRK12884 116 LGILYNWKLKEY--GLIGNLY------VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVEG----- 182 (279)
T ss_pred HHHHHHHhhccc--cchhHHH------HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh-----
Confidence 111111111111 0011111 122234444445443333222222333344455667788889988865
Q ss_pred CCCCccccccCcccHHHHHHhh
Q 014738 318 GKGSLSDIRHGIITAPILFAME 339 (419)
Q Consensus 318 GK~~~~Dl~~gk~TlPll~Al~ 339 (419)
|-+.|+.|+|+.+-.+
T Consensus 183 ------D~~~G~~Tl~v~~G~~ 198 (279)
T PRK12884 183 ------DRLRGARTLAILYGEK 198 (279)
T ss_pred ------HHHcCCeeechHhcHH
Confidence 4577999999988654
No 25
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=85.12 E-value=28 Score=34.46 Aligned_cols=137 Identities=16% Similarity=0.153 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 014738 230 ATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 309 (419)
Q Consensus 230 s~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD 309 (419)
...+.++..|..+|+....- .+++++..-++. ||...+ +.+..+++-.. ..........+|.|+|+.|=+.|
T Consensus 102 ~~~~~~~~da~~~Dl~~~~y--~~~~eL~~Yc~~-vAg~vG--~l~~~Il~~~~---~~~~~~~a~~lG~A~QlvNilRd 173 (288)
T COG1562 102 REAFPALIDAMRMDLDRTRY--LDFEELEEYCYG-VAGAVG--LLLARILGPDK---DAATRAYARGLGLALQLVNILRD 173 (288)
T ss_pred HHHHHHHHHHHHHHhhhccc--cCHHHHHHHHHH-hHHHHH--HHHHHHhCccc---chhhHHHHHHHHHHHHHHHHHHH
Confidence 35577889999999877532 334454443333 343332 22233333322 22334445559999999998888
Q ss_pred cccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 014738 310 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 389 (419)
Q Consensus 310 ~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L 389 (419)
+ +.|...|++=+|.=...+..-...++..... .+.+..+ +++-...++.|...|...+
T Consensus 174 v-----------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~--~~~~~~~---------~~~~~~~ar~~~~~a~~~~ 231 (288)
T COG1562 174 V-----------GEDRRRGRVYLPAEELARFGVSEADLLAGRV--DDAFREL---------MRFEADRARDHLAEARRGL 231 (288)
T ss_pred h-----------HHHHhCCcccCCHHHHHHhCCCHHHHHcccc--hhHHHHH---------HHHHHHHHHHHHHHHHHhh
Confidence 7 4678888888885433222222233322211 1122222 3444577888899999999
Q ss_pred ccCCCCC
Q 014738 390 DSLPENN 396 (419)
Q Consensus 390 ~~lp~~~ 396 (419)
..+|...
T Consensus 232 ~~lp~~~ 238 (288)
T COG1562 232 PALPGRA 238 (288)
T ss_pred hhCCccc
Confidence 9998776
No 26
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=83.97 E-value=41 Score=32.18 Aligned_cols=89 Identities=9% Similarity=-0.036 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-CCCCCCHHHHHHHHhhhhhchHHHHHH-HHHHHcCCCH---HHHHHHHHHHHHHH
Q 014738 224 EVVTLLATVVEHLVTGETMQMTTS-SDQRCSMDYYMQKTYYKTASLISNSCK-AIALLAGQTA---EVAILAFDYGKNLG 298 (419)
Q Consensus 224 ~v~~~ls~~~~~l~~Gq~~dl~~~-~~~~~s~~~yl~~i~~KTasL~~~a~~-~ga~lag~~~---~~~~~l~~~G~~lG 298 (419)
.....+.+.+...+.|...+..+. ....++.++|+.+-..-.|..+..++. .+.- -..++ .....+..+-...+
T Consensus 122 ~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R~~~~g~~~~~~l~~~~~g-~~l~~~~~~~~~~~~~l~~~~~ 200 (284)
T cd00868 122 ESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSFLGMG-DILPEEAFEWLPSYPKLVRASS 200 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhceehhhHHHHHHHHHHHcC-CCCCHHHHHHhhhhHHHHHHHH
Confidence 667778888888989988887664 234689999998766555444332222 1111 12343 34566777778888
Q ss_pred HHHhhhhhhhccccC
Q 014738 299 LAYQLIDDVLDFTGT 313 (419)
Q Consensus 299 ~AfQI~DD~lD~~g~ 313 (419)
..-=+.||+..|.-+
T Consensus 201 ~~~~l~NDl~S~~kE 215 (284)
T cd00868 201 TIGRLLNDIASYEKE 215 (284)
T ss_pred HHHHHhccchHHHHH
Confidence 888889999988533
No 27
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=79.63 E-value=45 Score=32.43 Aligned_cols=57 Identities=11% Similarity=-0.073 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCC---CCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHH
Q 014738 162 CIAEITEMIHVASLLHDDVLDDA---DTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 218 (419)
Q Consensus 162 ~lA~avEliH~AsLIHDDIiD~s---~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la 218 (419)
-+..++=++|.++.+..|+.|-+ ..|+.+|-.......+.|...+=.++..++....
T Consensus 42 l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~ 101 (276)
T PRK12882 42 LAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAF 101 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34445668899999999997743 3468889888888999999888888777764433
No 28
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=62.00 E-value=1.4e+02 Score=29.02 Aligned_cols=55 Identities=11% Similarity=-0.049 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCC---CCCCCcchhccCHHHHHHHHHHHHHHHHHH
Q 014738 162 CIAEITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGNKLAVLAGDFLLSRACVA 216 (419)
Q Consensus 162 ~lA~avEliH~AsLIHDDIiD~s~~---RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~ 216 (419)
-...++=++|.+..+..|+.|-+.- ++.+|-...+...+.|...+=.++..++..
T Consensus 41 l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l 98 (279)
T PRK09573 41 LAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLIL 98 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHH
Confidence 3444566899999999999885443 367888888889999999998887777643
No 29
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=58.37 E-value=1.5e+02 Score=29.61 Aligned_cols=51 Identities=8% Similarity=-0.116 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCC---CCCCcchhccCHHHHHHHHHHHHHHHHH
Q 014738 165 EITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKLAVLAGDFLLSRACV 215 (419)
Q Consensus 165 ~avEliH~AsLIHDDIiD~s~~R---RG~pt~h~~~G~~~AVl~GD~Lla~A~~ 215 (419)
.+.=++|.++.+..|+.|.+.-| +.+|...-+...+.|...+-.++..++.
T Consensus 72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~ 125 (314)
T PRK07566 72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLA 125 (314)
T ss_pred HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHH
Confidence 34557999999999999965444 5677777788888888888777666653
No 30
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=57.52 E-value=1.4e+02 Score=28.94 Aligned_cols=51 Identities=14% Similarity=-0.017 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhcCCCCCC---CCCCCCCcchhccCHHHHHHHHHHHHHHHHH
Q 014738 165 EITEMIHVASLLHDDVLDDA---DTRRGIGSLNFVMGNKLAVLAGDFLLSRACV 215 (419)
Q Consensus 165 ~avEliH~AsLIHDDIiD~s---~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~ 215 (419)
.++=+.|.+..+..|+.|-+ ..|+.+|-...+...+.|...+=.++..++.
T Consensus 44 ~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~~ 97 (277)
T PRK12883 44 LVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLA 97 (277)
T ss_pred HHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 34456678888999997733 2456777777777888888877766665543
No 31
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=55.66 E-value=2e+02 Score=28.56 Aligned_cols=50 Identities=6% Similarity=-0.150 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCC---CCCCCCcchhccCHHHHHHHHHHHHHHHH
Q 014738 165 EITEMIHVASLLHDDVLDDAD---TRRGIGSLNFVMGNKLAVLAGDFLLSRAC 214 (419)
Q Consensus 165 ~avEliH~AsLIHDDIiD~s~---~RRG~pt~h~~~G~~~AVl~GD~Lla~A~ 214 (419)
.+.=++|.++-++.|+.|.+. ..|.+|........+.+...+-.++..++
T Consensus 61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 455789999999999988543 23566777777888888888766665554
No 32
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=54.30 E-value=1.9e+02 Score=27.04 Aligned_cols=147 Identities=18% Similarity=0.144 Sum_probs=76.0
Q ss_pred HHHHHHHhhcCCCCCCCCCC--C---CCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHH
Q 014738 169 MIHVASLLHDDVLDDADTRR--G---IGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV--VTLLATVVEHLVTGET 241 (419)
Q Consensus 169 liH~AsLIHDDIiD~s~~RR--G---~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v--~~~ls~~~~~l~~Gq~ 241 (419)
++|.+.-+.||+.|-+.-|. + +|-...+...+.+...+-.++..+....... ++.. +-.+.-.+.-+.. .-
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~-~~~~~~~~~~~~~~~~~Ys-~~ 111 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLL-GPWFLLILLLGFLLGLLYS-PP 111 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHh-hh
Confidence 99999999999988666555 3 3444666666677766666655554322222 2222 2222222221111 10
Q ss_pred HhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCC
Q 014738 242 MQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 320 (419)
Q Consensus 242 ~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~-~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~ 320 (419)
..++..+- ..+.. .|..+.....+|+...+.+ ....-.+.-+.--++.+....+|+.|+.+|
T Consensus 112 ~~lk~~~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D------- 174 (257)
T PF01040_consen 112 LRLKRRPL----WGELV------VALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGD------- 174 (257)
T ss_pred hhhcceec----cchhh------HHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------
Confidence 01111100 00000 1111233334444444433 222333444446778888888899998765
Q ss_pred CccccccCcccHHHHHHh
Q 014738 321 SLSDIRHGIITAPILFAM 338 (419)
Q Consensus 321 ~~~Dl~~gk~TlPll~Al 338 (419)
.+.|+.|+|+.+..
T Consensus 175 ----~~~g~~Tl~v~~G~ 188 (257)
T PF01040_consen 175 ----RKAGRRTLPVLLGE 188 (257)
T ss_pred ----HHcCCcchHHHHHH
Confidence 46789999998844
No 33
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=53.30 E-value=1.5e+02 Score=29.61 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=31.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 276 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 276 ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
++.+.|.+.+....+...-+-+=.|.-|.||+.|= +++|.|++|....|
T Consensus 54 ~~~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRg~pt~~~~~ 102 (319)
T TIGR02748 54 AGKFGDYDLDAIKHVAVALELIHMASLVHDDVIDD------------ADLRRGRPTIKSKW 102 (319)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhccccCC------------CCCCCCCcCHHHHh
Confidence 33445555554444555566777888999999773 34677777765544
No 34
>PRK10581 geranyltranstransferase; Provisional
Probab=52.40 E-value=77 Score=31.47 Aligned_cols=61 Identities=26% Similarity=0.296 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC------------CCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC
Q 014738 161 QCIAEITEMIHVASLLHDDVLDD------------ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 221 (419)
Q Consensus 161 ~~lA~avEliH~AsLIHDDIiD~------------s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~ 221 (419)
..+...-+.+=.|+-|.|||.|- .+.+.|++|+-..+|...|-...+-++..|...|..++
T Consensus 206 ~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~ 278 (299)
T PRK10581 206 PVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLA 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34566678888999999999983 34566777777777776666666666777777777664
No 35
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=49.28 E-value=20 Score=28.86 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhh
Q 014738 283 TAEVAILAFDYGKNLGLAYQLIDDVL 308 (419)
Q Consensus 283 ~~~~~~~l~~~G~~lG~AfQI~DD~l 308 (419)
.+...+.+-+||..+|-.||++==+-
T Consensus 14 Eet~~e~llRYGLf~GAIFQliCilA 39 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLICILA 39 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35577889999999999999975433
No 36
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=49.22 E-value=2.8e+02 Score=27.65 Aligned_cols=56 Identities=13% Similarity=-0.065 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCC---CCCC--CCCcchhccCHHHHHHHHHHHHHHHHHHHH
Q 014738 163 IAEITEMIHVASLLHDDVLDDA---DTRR--GIGSLNFVMGNKLAVLAGDFLLSRACVALA 218 (419)
Q Consensus 163 lA~avEliH~AsLIHDDIiD~s---~~RR--G~pt~h~~~G~~~AVl~GD~Lla~A~~~la 218 (419)
...+.=++|.++.+..|+.|.+ ..+| .+|....+...+.|+..+-.+...++..+.
T Consensus 77 ~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~ 137 (314)
T PRK12878 77 FFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL 137 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4455668999999999997632 2343 589888888999998877766665554443
No 37
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=48.87 E-value=2.7e+02 Score=27.22 Aligned_cols=57 Identities=16% Similarity=0.005 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCC----CCC-CCCCcchhccCHHHHHHHHHHHHHHHHHHHH
Q 014738 162 CIAEITEMIHVASLLHDDVLDDA----DTR-RGIGSLNFVMGNKLAVLAGDFLLSRACVALA 218 (419)
Q Consensus 162 ~lA~avEliH~AsLIHDDIiD~s----~~R-RG~pt~h~~~G~~~AVl~GD~Lla~A~~~la 218 (419)
-+..++=++|.+..+..|+.|.+ ..| +.+|-..-+...+.|...+-.++..++-...
T Consensus 44 ~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~ 105 (281)
T TIGR01474 44 LFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLL 105 (281)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34445568899999999997742 233 4688888888889999888877776664433
No 38
>PLN00012 chlorophyll synthetase; Provisional
Probab=46.57 E-value=2.1e+02 Score=29.56 Aligned_cols=154 Identities=14% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC---CCCCCCCCCcchhccCHHHHHH--HHHHHHHHHHHHHH------cCCChHHHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDVLD---DADTRRGIGSLNFVMGNKLAVL--AGDFLLSRACVALA------SLKNTEVVTL 228 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD---~s~~RRG~pt~h~~~G~~~AVl--~GD~Lla~A~~~la------~~~~~~v~~~ 228 (419)
...+..+.=+++.++-+..|+.| |.-.++.+|........+.++. .+-++++.++..+- .....-++..
T Consensus 125 ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l 204 (375)
T PLN00012 125 IVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL 204 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q ss_pred HHHHHHHHHHH---HHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhh
Q 014738 229 LATVVEHLVTG---ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLID 305 (419)
Q Consensus 229 ls~~~~~l~~G---q~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~D 305 (419)
++-.+.-+..+ -......-++.-. -+.+...+...|..+.|.-....-.+.-+---+++++-+.+
T Consensus 205 ~gi~l~~~YS~pPl~lKr~~~~G~v~l------------G~~~~~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivn 272 (375)
T PLN00012 205 GGSLLSYIYSAPPLKLKQNGWIGNYAL------------GASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVN 272 (375)
T ss_pred HHHHHhhhhcCCchhhhHhccHhHHHH------------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhccccCccccCCCCccccccCcccHHHHH
Q 014738 306 DVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 306 D~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
|+.|+.+|. +.|+.|+|+.+
T Consensus 273 d~~Die~Dr-----------~aG~~TLpV~~ 292 (375)
T PLN00012 273 DFKSIEGDR-----------ALGLQSLPVAF 292 (375)
T ss_pred hhcchhhHH-----------HcCCcccceee
No 39
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=45.91 E-value=3.2e+02 Score=27.34 Aligned_cols=50 Identities=30% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 275 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 275 ~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
+++.+.|.+.+....+...-+-+=.|..|.||+.|= +++|.|++|+-..|
T Consensus 54 l~~~~~g~~~~~~~~~A~avEllH~asLiHDDI~D~------------s~~RRG~pt~~~~~ 103 (323)
T PRK10888 54 LAARAVGYQGNAHVTIAALIEFIHTATLLHDDVVDE------------SDMRRGKATANAAF 103 (323)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHcccccC------------CcccCCCCCHHHHh
Confidence 334444554444444555567777889999999773 35777888765554
No 40
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=44.68 E-value=3e+02 Score=26.61 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=26.3
Q ss_pred HHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHHHhhh
Q 014738 297 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 340 (419)
Q Consensus 297 lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~ 340 (419)
+-.+.++..|+.|+.+| -+.|+.|+|+.+-.+.
T Consensus 173 ~~~~~~~~~d~~D~e~D-----------~~~G~~Tlpv~lG~~~ 205 (285)
T PRK12872 173 KSFIREIVFDIKDIEGD-----------RKSGLKTLPIVLGKER 205 (285)
T ss_pred HHHHHHHHHhcccchhH-----------HHcCCcccchhcchHH
Confidence 45678899999998765 4679999999987654
No 41
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=43.07 E-value=2.8e+02 Score=26.09 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCC-CCCCHHHHHHHHhhhhhchHHHHHHHHHHHc---C-CCHHHHHHHHHHHHHHHH
Q 014738 225 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLA---G-QTAEVAILAFDYGKNLGL 299 (419)
Q Consensus 225 v~~~ls~~~~~l~~Gq~~dl~~~~~-~~~s~~~yl~~i~~KTasL~~~a~~~ga~la---g-~~~~~~~~l~~~G~~lG~ 299 (419)
+...|.+.+...+.|...+..+... ..+|+++|+.+=..-+|..+..++..-++ . | .+++..+.-..+-...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 216 (270)
T PF03936_consen 138 QIKRFRNSWREYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFAL-EFALGELPPEVLEHPPMLRRLAAD 216 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHC-SSCHTHHHHHHHHTTHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhC-CCccccccHHHHHhchHHHHHHHH
Confidence 4455888888888888877766533 35889999977665555544444332222 2 1 112222221125555666
Q ss_pred HHhhhhhhhcccc
Q 014738 300 AYQLIDDVLDFTG 312 (419)
Q Consensus 300 AfQI~DD~lD~~g 312 (419)
.--+.||+..|..
T Consensus 217 ~~~l~NDl~S~~K 229 (270)
T PF03936_consen 217 IIRLVNDLYSYKK 229 (270)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhcccchhhc
Confidence 6666799999843
No 42
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=35.80 E-value=4.2e+02 Score=25.72 Aligned_cols=49 Identities=14% Similarity=0.054 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCC----C-CCCCCcchhccCHHHHHHHHHHHHH
Q 014738 163 IAEITEMIHVASLLHDDVLDDAD----T-RRGIGSLNFVMGNKLAVLAGDFLLS 211 (419)
Q Consensus 163 lA~avEliH~AsLIHDDIiD~s~----~-RRG~pt~h~~~G~~~AVl~GD~Lla 211 (419)
...++=+++.+..+..|+.|-+. . ++.+|-...+...+.|...+=.++.
T Consensus 41 ~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~ 94 (282)
T TIGR01475 41 ILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLA 94 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 34455688999999999977432 2 3567888878888888887765443
No 43
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=35.08 E-value=4.1e+02 Score=25.38 Aligned_cols=48 Identities=33% Similarity=0.279 Sum_probs=29.9
Q ss_pred HHHcCCCH-HHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 277 ALLAGQTA-EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 277 a~lag~~~-~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
+.+.|.++ +....+...-+-+=.|+-|.||+.|= +++|.|++|+-..|
T Consensus 30 ~~~~g~~~~~~~~~la~aiEllh~asLIhDDI~D~------------s~~RRG~p~~~~~~ 78 (259)
T cd00685 30 ARALGGPELEAALRLAAAIELLHTASLVHDDVMDN------------SDLRRGKPTVHKVF 78 (259)
T ss_pred HHHhCCCchHHHHHHHHHHHHHHHHHHHHhhhccC------------CcccCCCCcHHHHh
Confidence 33334444 44455566667788899999999762 23566666665544
No 44
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=33.92 E-value=4.5e+02 Score=25.57 Aligned_cols=156 Identities=17% Similarity=0.097 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCC-----CCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHH-HHHHHHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDVLDDADTRR-----GIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV-VTLLATVV 233 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD~s~~RR-----G~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v-~~~ls~~~ 233 (419)
..-+..++=+.-.+..+..|+.|-+--|+ .+|-...+-..+.|....-.++..++.....+..... +-..+-.+
T Consensus 49 ~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l 128 (289)
T COG0382 49 LLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVL 128 (289)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455566678888999999977554443 6666666777788877776666665544333322112 22222222
Q ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 014738 234 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLIDDVLDFTG 312 (419)
Q Consensus 234 ~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~-~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g 312 (419)
.-.. --++. ..-..++. -|..+..+.-.|+...+. .....-.+.-+..-..++|.+..|+.|..+
T Consensus 129 ~~~Y----~~~Kr----~~~~~~~~------lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~ 194 (289)
T COG0382 129 ALAY----PFLKR----FTFLPQLV------LGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEG 194 (289)
T ss_pred HHHH----HHhhc----CCchHHHH------HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 2222 11111 11122222 244566666666655543 334445677777888899999999999976
Q ss_pred CccccCCCCccccccCcccHHHHHHhhh
Q 014738 313 TSASLGKGSLSDIRHGIITAPILFAMEE 340 (419)
Q Consensus 313 ~~~~~GK~~~~Dl~~gk~TlPll~Al~~ 340 (419)
|. +.|..|.|+.+..+.
T Consensus 195 D~-----------~~G~~s~~~~~G~~~ 211 (289)
T COG0382 195 DR-----------KAGLKSLPVLFGIKK 211 (289)
T ss_pred hH-----------hcCCcchHHHhCchh
Confidence 64 668888888886544
No 45
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=33.26 E-value=4.4e+02 Score=25.20 Aligned_cols=53 Identities=28% Similarity=0.188 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 272 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 272 a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
-|.+.+.+.|.+.+....+...-+.+=.|+-|.||+.|= +++|.|++|.-..|
T Consensus 20 l~~~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D~------------s~~RRG~pt~~~~~ 72 (260)
T PF00348_consen 20 LVLLAAEALGGDPEKAIPLAAAVELIHAASLIHDDIIDN------------SDLRRGKPTVHKKF 72 (260)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc------------cccCCCCccccccc
Confidence 344455555666666677777788888999999999773 34788888765555
No 46
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=32.40 E-value=5.1e+02 Score=25.65 Aligned_cols=30 Identities=10% Similarity=-0.114 Sum_probs=22.3
Q ss_pred CCCCcchhccCHHHHHHHHHHHHHHHHHHH
Q 014738 188 RGIGSLNFVMGNKLAVLAGDFLLSRACVAL 217 (419)
Q Consensus 188 RG~pt~h~~~G~~~AVl~GD~Lla~A~~~l 217 (419)
+.+|....+...+.|...+-.+...++..+
T Consensus 85 ~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~ 114 (297)
T PRK12871 85 KERPIPSGKLSSKNAFALFILLAAVTSALI 114 (297)
T ss_pred CCCccCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 467878888888888888877776665443
No 47
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=28.60 E-value=5.2e+02 Score=25.84 Aligned_cols=36 Identities=36% Similarity=0.366 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 289 LAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 289 ~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
.+...-+.+=.|.-|.||++|- +|+|.|++|.-..|
T Consensus 71 ~~A~avEliH~asLiHDDiiD~------------s~~RRG~pt~h~~~ 106 (322)
T TIGR02749 71 RLAEITEMIHTASLVHDDVIDE------------SDTRRGIETVHSLF 106 (322)
T ss_pred HHHHHHHHHHHHHHHHcccccC------------ccccCCCccHHHHh
Confidence 3444556677888999999773 35778888866554
No 48
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=28.45 E-value=3.6e+02 Score=26.27 Aligned_cols=82 Identities=18% Similarity=0.106 Sum_probs=47.1
Q ss_pred CHHHHHHHHhhhhhchHHHHHHHHHHHcCC--CHHHH-HHHHHHHH-HHHHHHhhhhhhhcccc--CccccCCCCccccc
Q 014738 253 SMDYYMQKTYYKTASLISNSCKAIALLAGQ--TAEVA-ILAFDYGK-NLGLAYQLIDDVLDFTG--TSASLGKGSLSDIR 326 (419)
Q Consensus 253 s~~~yl~~i~~KTasL~~~a~~~ga~lag~--~~~~~-~~l~~~G~-~lG~AfQI~DD~lD~~g--~~~~~GK~~~~Dl~ 326 (419)
+...|++..+-+|-..-..++-+|+.++.. ..... -.+.-+|- -+=.+-.+.||+.|+.. |.... .+...-+-
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~-~~~~r~l~ 80 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDR-VGPLRAIG 80 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccc-cCCccccc
Confidence 456799999999988888888888877621 11111 11111221 11234478999999953 32111 11123466
Q ss_pred cCcccHHHH
Q 014738 327 HGIITAPIL 335 (419)
Q Consensus 327 ~gk~TlPll 335 (419)
.|+.|.+-.
T Consensus 81 ~G~is~~~~ 89 (293)
T PRK06080 81 RGGISPKQV 89 (293)
T ss_pred CCCCCHHHH
Confidence 788776653
No 49
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=27.80 E-value=94 Score=30.68 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=27.2
Q ss_pred HHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHHHhhh
Q 014738 297 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 340 (419)
Q Consensus 297 lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~ 340 (419)
+..++.+.+|+.|+.+| -++|+.|+|+.+-.+.
T Consensus 172 ~~~a~~ii~~irDie~D-----------r~~G~~Tlpv~lG~~~ 204 (282)
T PRK13105 172 WGMASHAFGAVQDVVAD-----------REAGIASIATVLGARR 204 (282)
T ss_pred HHHHHHHHHhCcchHhH-----------HHcCCccchHHhcHHH
Confidence 46799999999999765 4679999999987654
No 50
>PRK13591 ubiA prenyltransferase; Provisional
Probab=27.58 E-value=6.4e+02 Score=25.30 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=23.4
Q ss_pred HHHhhhhhhhccccCccccCCCCccccccCcccHHHHHHhhh
Q 014738 299 LAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 340 (419)
Q Consensus 299 ~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~ 340 (419)
++..+.+|+.|..|| .++|+.|+|+.+-.+.
T Consensus 193 ~~~~iindirDiEGD-----------r~~G~kTLPV~lG~~~ 223 (307)
T PRK13591 193 FINSCVYDFKDVKGD-----------TLAGIKTLPVSLGEQK 223 (307)
T ss_pred HHHHHHHHhhhhHhH-----------HHcCCeeEEEEECHHH
Confidence 344578999999765 5779999999886554
No 51
>CHL00151 preA prenyl transferase; Reviewed
Probab=24.51 E-value=2.8e+02 Score=27.67 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC
Q 014738 160 QQCIAEITEMIHVASLLHDDVLD 182 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD 182 (419)
...+...-+-+=.|+-|.|||+|
T Consensus 197 ~~~l~~~G~~lG~aFQi~DDilD 219 (323)
T CHL00151 197 HNDFYLYGKHLGLAFQIIDDVLD 219 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666678889999999988
No 52
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=24.47 E-value=6.8e+02 Score=24.55 Aligned_cols=56 Identities=16% Similarity=-0.027 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCC----CC-CCCCcchhccCHHHHHHHHHHHHHHHHHHHH
Q 014738 163 IAEITEMIHVASLLHDDVLDDAD----TR-RGIGSLNFVMGNKLAVLAGDFLLSRACVALA 218 (419)
Q Consensus 163 lA~avEliH~AsLIHDDIiD~s~----~R-RG~pt~h~~~G~~~AVl~GD~Lla~A~~~la 218 (419)
...++=++|.+..+..|+.|-+- .| +.+|-...+...+.|++.+=.++..++....
T Consensus 51 ~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~ 111 (290)
T PRK12870 51 IILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAF 111 (290)
T ss_pred HHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34455678999999999977432 33 4788888888999999988887776664433
No 53
>PLN02857 octaprenyl-diphosphate synthase
Probab=23.10 E-value=3.4e+02 Score=28.38 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC
Q 014738 161 QCIAEITEMIHVASLLHDDVLDD 183 (419)
Q Consensus 161 ~~lA~avEliH~AsLIHDDIiD~ 183 (419)
..+...-+.+=.|+-|-|||+|-
T Consensus 291 ~~l~~fG~~LGiAFQI~DDiLD~ 313 (416)
T PLN02857 291 EQMYEYGKNLGLAFQVVDDILDF 313 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566667788899999999983
No 54
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=21.79 E-value=1.4e+02 Score=29.85 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC-CCCCCCCCCcchhccCHHHHHHHHHHHHHHHH
Q 014738 161 QCIAEITEMIHVASLLHDDVLD-DADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC 214 (419)
Q Consensus 161 ~~lA~avEliH~AsLIHDDIiD-~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~ 214 (419)
.-++...-+...+.++..|+.| ++|.+.|++|.-..+|.+.+....-+++..++
T Consensus 192 ~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~ 246 (314)
T PRK07566 192 VILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQ 246 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHH
Confidence 3444455556666678888887 45567899999999999988877666655554
No 55
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=21.07 E-value=1.6e+02 Score=28.59 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-CCCCCCCCCcchhccCHHHHHHHHHHHHHH
Q 014738 162 CIAEITEMIHVASLLHDDVLD-DADTRRGIGSLNFVMGNKLAVLAGDFLLSR 212 (419)
Q Consensus 162 ~lA~avEliH~AsLIHDDIiD-~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~ 212 (419)
-++..+-+.-.+.++..|+.| +.|.+.|++|+-..+|.+.+...--.++..
T Consensus 165 ~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~ 216 (283)
T TIGR01476 165 VVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINV 216 (283)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHH
Confidence 345555566777889999999 666778999999999999887765554443
No 56
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=21.04 E-value=7.6e+02 Score=23.86 Aligned_cols=50 Identities=8% Similarity=-0.193 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCC---CCcchhccCHHHHHHHHHHHHHHHH
Q 014738 165 EITEMIHVASLLHDDVLDDADTRRG---IGSLNFVMGNKLAVLAGDFLLSRAC 214 (419)
Q Consensus 165 ~avEliH~AsLIHDDIiD~s~~RRG---~pt~h~~~G~~~AVl~GD~Lla~A~ 214 (419)
.+.=+++.++-+..|+.|.+.-|+. +|........+.+...+=.++..++
T Consensus 45 ~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~ 97 (283)
T TIGR01476 45 MAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGL 97 (283)
T ss_pred HHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 4566899999999999997765554 4555555666777777655555444
No 57
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=20.41 E-value=1.6e+02 Score=29.08 Aligned_cols=59 Identities=24% Similarity=0.185 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDVLDDA-DTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 218 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD~s-~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la 218 (419)
..-++.++=+.-.+.++.-++.|-+ |.+.|+.|+-.++|.+.|....-.++..++..+.
T Consensus 162 ~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~ 221 (282)
T PRK13105 162 LWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML 221 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667778899999999944 5667999999999999999988888877765444
No 58
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=20.22 E-value=4.6e+02 Score=25.51 Aligned_cols=56 Identities=25% Similarity=0.216 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC-CCCCCCCCCcchhccCHHHHHHHHHHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDVLD-DADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC 214 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDIiD-~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~ 214 (419)
...-++..+-++-.+.++..|+.| ++|.+.|+.|+-..+|.+.+...--.++..++
T Consensus 169 ~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~ 225 (293)
T PRK06080 169 AVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAY 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHH
Confidence 345566677777778888899988 44567899999999999987776666655554
Done!