Query 014738
Match_columns 419
No_of_seqs 244 out of 1590
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 4.5E-72 1.5E-76 559.9 33.5 315 79-418 25-344 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 8.5E-71 2.9E-75 550.5 35.5 316 79-419 12-333 (341)
3 3apz_A Geranyl diphosphate syn 100.0 1.9E-71 6.6E-76 557.7 28.9 341 79-419 8-348 (348)
4 3rmg_A Octaprenyl-diphosphate 100.0 1.6E-70 5.6E-75 547.2 29.6 314 80-419 8-326 (334)
5 3pko_A Geranylgeranyl pyrophos 100.0 2.2E-70 7.4E-75 546.4 28.9 317 79-419 15-334 (334)
6 3lmd_A Geranylgeranyl pyrophos 100.0 4E-70 1.4E-74 548.1 28.2 315 79-419 34-352 (360)
7 3nf2_A Putative polyprenyl syn 100.0 1.4E-69 4.7E-74 543.6 30.2 313 82-419 6-344 (352)
8 1wy0_A Geranylgeranyl pyrophos 100.0 3.9E-69 1.3E-73 539.7 28.7 314 81-419 7-342 (342)
9 3aqb_B Component B of hexapren 100.0 7.3E-69 2.5E-73 534.2 29.0 314 79-419 4-325 (325)
10 4dhd_A Polyprenyl synthetase; 100.0 2.2E-67 7.6E-72 529.0 31.3 309 83-419 8-336 (358)
11 1wmw_A Geranylgeranyl diphosph 100.0 3.1E-67 1.1E-71 523.5 26.7 306 86-419 6-330 (330)
12 1v4e_A Octoprenyl-diphosphate 100.0 1E-65 3.5E-70 505.5 25.0 281 85-396 9-289 (299)
13 3lk5_A Geranylgeranyl pyrophos 100.0 6E-65 2.1E-69 514.5 29.3 321 79-418 19-372 (380)
14 3tc1_A Octaprenyl pyrophosphat 100.0 6.5E-65 2.2E-69 502.7 26.9 299 88-415 5-307 (315)
15 2e8v_A Geranylgeranyl pyrophos 100.0 2E-65 6.8E-70 512.1 22.5 304 92-416 10-339 (340)
16 2q80_A Geranylgeranyl pyrophos 100.0 3.3E-65 1.1E-69 502.5 21.1 292 96-419 2-297 (301)
17 3uca_A Geranyltranstransferase 100.0 1.3E-63 4.5E-68 493.9 26.4 281 79-419 31-324 (324)
18 4f62_A Geranyltranstransferase 100.0 8E-63 2.8E-67 487.0 29.3 279 80-419 4-295 (317)
19 3ts7_A Geranyltranstransferase 100.0 4.9E-63 1.7E-67 489.9 27.3 280 79-419 7-302 (324)
20 1yhl_A Farnesyl pyrophosphate 100.0 1.8E-62 6.2E-67 495.0 30.1 299 105-419 34-362 (362)
21 1rqj_A Geranyltranstransferase 100.0 2.7E-63 9.3E-68 488.6 23.1 281 81-419 3-299 (299)
22 1rtr_A Geranyltranstransferase 100.0 3.3E-63 1.1E-67 488.1 23.5 273 88-419 9-293 (301)
23 3lsn_A Geranyltranstransferase 100.0 1E-62 3.4E-67 484.6 26.9 279 80-419 2-296 (304)
24 2h8o_A Geranyltranstransferase 100.0 7.5E-63 2.6E-67 491.2 25.0 278 81-419 39-335 (335)
25 3p8l_A Geranyltranstransferase 100.0 2.7E-62 9.2E-67 480.9 27.3 278 82-417 11-302 (302)
26 3p8r_A Geranyltranstransferase 100.0 1.8E-62 6.3E-67 482.5 25.9 278 81-419 9-302 (302)
27 2qis_A Farnesyl pyrophosphate 100.0 6.5E-62 2.2E-66 492.1 30.1 295 105-419 64-374 (374)
28 1uby_A FPS, farnesyl diphospha 100.0 1.7E-61 5.9E-66 487.8 28.7 295 105-419 57-367 (367)
29 3m0g_A Farnesyl diphosphate sy 100.0 4.7E-62 1.6E-66 478.3 23.1 276 80-419 2-289 (297)
30 3dyh_A Farnesyl pyrophosphate 100.0 9.4E-62 3.2E-66 492.9 25.1 326 80-419 24-390 (390)
31 3pde_A Farnesyl-diphosphate sy 100.0 1E-61 3.6E-66 477.5 23.8 280 81-419 8-300 (309)
32 3lom_A Geranyltranstransferase 100.0 1.4E-61 4.7E-66 478.0 24.5 276 82-418 10-302 (313)
33 2ihi_A Pyrophosphate synthase; 100.0 2.7E-61 9.2E-66 489.7 25.9 293 105-418 66-395 (395)
34 3ipi_A Geranyltranstransferase 100.0 3.3E-61 1.1E-65 472.0 24.4 272 89-418 11-283 (295)
35 2ftz_A Geranyltranstransferase 100.0 6.4E-61 2.2E-65 467.6 25.4 265 89-417 15-284 (284)
36 3mav_A Farnesyl pyrophosphate 100.0 3.8E-60 1.3E-64 482.9 29.5 291 106-417 67-394 (395)
37 2her_A Fragment, farnesyl pyro 100.0 3.5E-61 1.2E-65 483.8 17.8 284 105-417 58-354 (368)
38 3llw_A Geranyltranstransferase 100.0 1.1E-58 3.7E-63 457.0 25.4 281 83-418 10-304 (311)
39 3npk_A Geranyltranstransferase 100.0 2.3E-57 7.9E-62 443.7 23.3 267 89-416 6-284 (291)
40 2azj_A Geranylgeranyl pyrophos 100.0 2.3E-57 7.7E-62 443.8 23.1 268 79-418 9-280 (289)
41 2j1p_A Geranylgeranyl pyrophos 100.0 5.5E-57 1.9E-61 442.4 25.9 268 79-419 11-293 (293)
42 2q58_A Fragment, farnesyl pyro 100.0 6.1E-57 2.1E-61 455.0 19.1 283 106-418 59-359 (368)
43 4fp4_A Polyprenyl synthetase; 100.0 1.4E-52 4.8E-57 407.4 14.7 220 81-328 6-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 3.2E-48 1.1E-52 376.6 24.3 204 84-307 4-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 1.1E-46 3.6E-51 365.9 25.3 202 84-308 9-223 (273)
46 4hd1_A Squalene synthase HPNC; 96.3 0.29 9.9E-06 47.0 18.8 132 233-395 106-237 (294)
47 3acx_A Dehydrosqualene synthas 94.9 0.29 9.8E-06 47.0 12.9 134 232-395 109-242 (293)
48 3vj8_A Squalene synthase; farn 94.4 0.51 1.7E-05 46.4 13.4 145 225-395 112-256 (343)
49 3kb9_A EPI-isozizaene synthase 81.7 41 0.0014 32.9 16.5 93 220-313 173-269 (382)
50 3aqb_A Component A of hexapren 79.0 2.8 9.5E-05 35.6 5.2 45 202-246 72-116 (147)
51 3v1v_A 2-MIB synthase, 2-methy 79.0 43 0.0015 33.7 15.1 96 215-313 246-346 (433)
52 3g4d_A (+)-delta-cadinene synt 63.2 1.4E+02 0.005 30.8 15.8 89 223-313 365-459 (554)
53 3n0f_A Isoprene synthase; terp 60.3 75 0.0026 33.0 12.2 88 225-313 365-457 (555)
54 1ps1_A Pentalenene synthase; a 60.3 1.1E+02 0.0039 28.7 15.7 98 216-313 126-227 (337)
55 3m00_A Aristolochene synthase; 57.8 1.1E+02 0.0038 31.7 13.0 88 223-313 361-454 (550)
56 3lsn_A Geranyltranstransferase 54.8 14 0.00049 35.4 5.3 81 160-240 205-299 (304)
57 3uca_A Geranyltranstransferase 54.1 25 0.00084 34.1 6.9 71 160-230 233-316 (324)
58 2q80_A Geranylgeranyl pyrophos 50.8 1.5E+02 0.0052 27.9 11.9 47 278-336 38-84 (301)
59 4f62_A Geranyltranstransferase 50.1 20 0.00069 34.6 5.5 62 160-221 204-277 (317)
60 3rmg_A Octaprenyl-diphosphate 47.9 95 0.0032 29.9 10.0 53 273-337 55-107 (334)
61 3bny_A Aristolochene synthase; 47.5 1.8E+02 0.0061 27.1 13.5 64 250-313 164-227 (320)
62 1rtr_A Geranyltranstransferase 45.7 20 0.00067 34.3 4.7 62 160-221 200-273 (301)
63 3mzv_A Decaprenyl diphosphate 45.6 1.6E+02 0.0056 28.3 11.4 54 271-336 59-112 (341)
64 3p8l_A Geranyltranstransferase 45.3 29 0.00098 33.2 5.7 61 160-220 208-280 (302)
65 3m0g_A Farnesyl diphosphate sy 44.7 60 0.002 30.8 7.9 78 162-239 200-291 (297)
66 3nf2_A Putative polyprenyl syn 42.6 89 0.003 30.4 8.9 54 271-336 60-113 (352)
67 4fp4_A Polyprenyl synthetase; 42.5 1.4E+02 0.0046 28.2 9.9 52 273-336 53-107 (285)
68 2h8o_A Geranyltranstransferase 42.1 32 0.0011 33.4 5.6 62 160-221 244-317 (335)
69 3p8r_A Geranyltranstransferase 41.0 28 0.00096 33.2 4.9 62 161-222 212-285 (302)
70 3ts7_A Geranyltranstransferase 40.7 51 0.0018 31.8 6.8 63 160-222 211-285 (324)
71 3lmd_A Geranylgeranyl pyrophos 38.7 1.2E+02 0.0043 29.5 9.3 52 273-336 82-134 (360)
72 3lom_A Geranyltranstransferase 37.8 42 0.0014 32.2 5.6 72 160-231 212-296 (313)
73 2ftz_A Geranyltranstransferase 36.0 2.7E+02 0.0093 26.0 11.0 50 275-336 56-107 (284)
74 1n1b_A (+)-bornyl diphosphate 34.5 2.1E+02 0.0071 29.6 10.6 88 225-313 362-455 (549)
75 2ong_A 4S-limonene synthase; m 33.7 4.1E+02 0.014 27.2 15.4 88 225-313 356-448 (543)
76 3sdr_A Alpha-bisabolene syntha 33.5 1.4E+02 0.0048 32.5 9.5 87 225-313 626-721 (817)
77 3aqb_B Component B of hexapren 32.2 1.6E+02 0.0055 28.0 8.8 52 273-336 52-103 (325)
78 3p5p_A Taxadiene synthase; cla 32.1 1.9E+02 0.0064 31.3 10.1 87 225-313 567-659 (764)
79 3ipi_A Geranyltranstransferase 31.4 77 0.0026 30.0 6.3 63 161-223 190-266 (295)
80 1v4e_A Octoprenyl-diphosphate 30.8 2E+02 0.0069 27.0 9.1 48 277-336 52-100 (299)
81 3pde_A Farnesyl-diphosphate sy 28.9 76 0.0026 30.3 5.8 60 161-220 208-279 (309)
82 3pko_A Geranylgeranyl pyrophos 28.7 2.3E+02 0.0077 27.2 9.2 51 274-336 64-115 (334)
83 4dhd_A Polyprenyl synthetase; 27.7 2E+02 0.0069 27.8 8.7 51 274-336 54-104 (358)
84 2e8v_A Geranylgeranyl pyrophos 26.3 4.2E+02 0.014 25.2 10.7 48 277-336 52-99 (340)
85 3llw_A Geranyltranstransferase 25.9 1.7E+02 0.0059 27.8 7.7 59 161-219 213-281 (311)
86 1di1_A Aristolochene synthase; 25.8 3.8E+02 0.013 24.3 17.9 64 250-313 150-213 (300)
87 2azj_A Geranylgeranyl pyrophos 24.5 3.2E+02 0.011 25.6 9.2 53 273-337 57-109 (289)
88 1yyq_A Trichodiene synthase; t 24.3 5E+02 0.017 25.2 18.3 151 169-341 91-252 (374)
89 1wy0_A Geranylgeranyl pyrophos 21.6 3E+02 0.01 26.3 8.6 51 274-336 55-105 (342)
90 3oyr_A Trans-isoprenyl diphosp 21.0 2.4E+02 0.0082 27.2 7.7 39 271-309 71-109 (345)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=4.5e-72 Score=559.92 Aligned_cols=315 Identities=30% Similarity=0.432 Sum_probs=265.3
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
.+++.++.++++.|+..|++.+.+.+|.+.++++|++..| |||+||+|++++++++|++.+
T Consensus 25 ~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~~----------------- 85 (345)
T 3oyr_A 25 DRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADND----------------- 85 (345)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCSS-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------
Confidence 4567789999999999999999999999999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 238 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~ 238 (419)
.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++..++++++.+++++..+++
T Consensus 86 ~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 165 (345)
T 3oyr_A 86 HFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAE 165 (345)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccC
Q 014738 239 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 318 (419)
Q Consensus 239 Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~G 318 (419)
||.+|+.+..+...++++|++++++|||+||++||++|++++|.+++..+.+++||.++|+||||+||++||+++++.+|
T Consensus 166 GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~G 245 (345)
T 3oyr_A 166 GEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLG 245 (345)
T ss_dssp HHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcC
Confidence 99999999887789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcccHHHHHHhhhC-chHHHHH----HcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 014738 319 KGSLSDIRHGIITAPILFAMEEF-PQLRTVV----EQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 393 (419)
Q Consensus 319 K~~~~Dl~~gk~TlPll~Al~~~-~~~~~~l----~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 393 (419)
||.|+||++||+|+|++++++.. +..++.+ .+...+++++++++++|.++|++++|+.++++|.++|.+.|+.||
T Consensus 246 K~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp 325 (345)
T 3oyr_A 246 KNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFP 325 (345)
T ss_dssp -----------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSC
T ss_pred CCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999874 3434443 333345678999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhcc
Q 014738 394 ENNDEDVTKSRRALLDLTHRVITRN 418 (419)
Q Consensus 394 ~~~~~~~~~~r~~L~~L~~~v~~R~ 418 (419)
+++ +|+.|.+|++++++|+
T Consensus 326 ~~~------~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 326 AND------WREALEELADFAVSRR 344 (345)
T ss_dssp SSH------HHHHHHHHHHHHHHC-
T ss_pred CcH------HHHHHHHHHHHHHhcc
Confidence 988 9999999999999996
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=8.5e-71 Score=550.48 Aligned_cols=316 Identities=29% Similarity=0.497 Sum_probs=280.8
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 157 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~-~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~ 157 (419)
.+++..+.++++.|+..|++.+.+. +|.+.++++|++..| |||+||.+++++++++|++.+
T Consensus 12 ~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~---------------- 73 (341)
T 3mzv_A 12 DRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLAAARLVGYGGP---------------- 73 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSC--CCCHHHHHHHHHHHHTTCCCS----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH----------------
Confidence 4457789999999999999999988 899999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 014738 158 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 237 (419)
Q Consensus 158 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~ 237 (419)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..+++..++++++.+++++..++
T Consensus 74 -~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 152 (341)
T 3mzv_A 74 -FHVHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIA 152 (341)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCcccc
Q 014738 238 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 317 (419)
Q Consensus 238 ~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~ 317 (419)
+||.+|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+
T Consensus 153 ~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~ 232 (341)
T 3mzv_A 153 EGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEI 232 (341)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhc
Confidence 99999999987778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCcccHHHHHHhhhCch-----HHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 014738 318 GKGSLSDIRHGIITAPILFAMEEFPQ-----LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 392 (419)
Q Consensus 318 GK~~~~Dl~~gk~TlPll~Al~~~~~-----~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~l 392 (419)
|||.|+||++||+|+|+++|++..+. +.+++.+...+++++++++++++++|++++|+.++++|.++|.+.|+.|
T Consensus 233 GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~l 312 (341)
T 3mzv_A 233 GKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKL 312 (341)
T ss_dssp ---CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999987542 3445555445678899999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 393 PENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 393 p~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
|+++ +|+.|.+|++++++|++
T Consensus 313 p~~~------~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 313 PDHP------LRQMLDDLADYVVERVR 333 (341)
T ss_dssp CCCH------HHHHHHHHHHHHTGGGC
T ss_pred CCCH------HHHHHHHHHHHHHhccc
Confidence 9998 99999999999999974
No 3
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=1.9e-71 Score=557.70 Aligned_cols=341 Identities=80% Similarity=1.160 Sum_probs=277.0
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
.+++..+.+|++.|+..|++.+.+.+|.+.++++|++..|.+|||+||.|++++++++|++.+.+.+.+..+..+.++.+
T Consensus 8 ~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (348)
T 3apz_A 8 LDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRV 87 (348)
T ss_dssp CCTTTTTHHHHHHHHHGGGGCCCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhH
Confidence 56788999999999999999999999999999999998554599999999999999998643211100000011123445
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 238 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~ 238 (419)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..++...++++++.+++++..+++
T Consensus 88 ~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 167 (348)
T 3apz_A 88 RQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVT 167 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccC
Q 014738 239 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 318 (419)
Q Consensus 239 Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~G 318 (419)
||.+|+.+..+...++++|++++++|||+||+++|++|++++|.+++..+.+++||.++|+||||+||++||+++++.+|
T Consensus 168 GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~G 247 (348)
T 3apz_A 168 GETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLG 247 (348)
T ss_dssp HHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTT
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcC
Confidence 99999988765568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 014738 319 KGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 398 (419)
Q Consensus 319 K~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~ 398 (419)
||.|+||++||.|+|+++|++..+.+++++.+.+.+++++++++++|.++|++++|++.+++|.++|.+.|+.||.++..
T Consensus 248 K~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~ 327 (348)
T 3apz_A 248 KGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNE 327 (348)
T ss_dssp CSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCH
T ss_pred CcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 99999999999999999999998889999988888888999999999999999999999999999999999999987532
Q ss_pred chHHHHHHHHHHHHHHHhccC
Q 014738 399 DVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 399 ~~~~~r~~L~~L~~~v~~R~~ 419 (419)
....+++.|.+|++++++|++
T Consensus 328 ~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 328 DVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHHHHhCcC
Confidence 223378999999999999975
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-70 Score=547.23 Aligned_cols=314 Identities=28% Similarity=0.386 Sum_probs=271.8
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014738 80 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 159 (419)
Q Consensus 80 d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
+.+..+.++++.|+..+++.+.+.+|.+.++++|++..| |||+||.+++++++++|++. +.
T Consensus 8 ~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~ 68 (334)
T 3rmg_A 8 LIKTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRN--GKMMRPILVLLVARLYGAVT-----------------PA 68 (334)
T ss_dssp HHHGGGHHHHHHHHHHTC----CCCHHHHHHHHHTCC------CHHHHHHHHHHHHHSCCC-----------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------HH
Confidence 356789999999999999999999999999999999888 99999999999999998642 36
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 239 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~G 239 (419)
+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..++...++++++.+++++..++.|
T Consensus 69 ~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G 148 (334)
T 3rmg_A 69 TLHAAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEG 148 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCC
Q 014738 240 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 319 (419)
Q Consensus 240 q~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK 319 (419)
|.+|+.+..+...++++|++|+++|||+||+++|++|++++|++++..+.++.||.++|+||||+||++|++ +++.+||
T Consensus 149 Q~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK 227 (334)
T 3rmg_A 149 ELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGK 227 (334)
T ss_dssp HHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC-----
T ss_pred HHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCC
Confidence 999999987777999999999999999999999999999999999999999999999999999999999999 5789999
Q ss_pred CCccccccCcccHHHHHHhhhC-c----hHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC
Q 014738 320 GSLSDIRHGIITAPILFAMEEF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 394 (419)
Q Consensus 320 ~~~~Dl~~gk~TlPll~Al~~~-~----~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~ 394 (419)
|.|+||++||+|+|+++|++.. + .+.+++.+...++++++++++++.++|++++|+.++++|.++|.+.|+.||+
T Consensus 228 ~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~ 307 (334)
T 3rmg_A 228 PTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPD 307 (334)
T ss_dssp -CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999874 2 4566777777788999999999999999999999999999999999999998
Q ss_pred CCCcchHHHHHHHHHHHHHHHhccC
Q 014738 395 NNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 395 ~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
++ +|+.|.+|++++++|.+
T Consensus 308 ~~------~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 308 SN------ICLALRTYLDYVVAREK 326 (334)
T ss_dssp CH------HHHHHHHHHHHHHHCC-
T ss_pred cH------HHHHHHHHHHHHHhccc
Confidence 88 99999999999999974
No 5
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=2.2e-70 Score=546.39 Aligned_cols=317 Identities=26% Similarity=0.433 Sum_probs=296.0
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
.++|+.+.+|++.|+..|++.+.+.+|.+.+++.|++..| |||+||.|++++++ +|+..+ .+
T Consensus 15 ~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~-~g~~~~---------------~~ 76 (334)
T 3pko_A 15 WRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSG--GKLLRPGYFYLFST-FGNAAT---------------PA 76 (334)
T ss_dssp GGGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHT-TCSCCC---------------HH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHH-HcCCCC---------------HH
Confidence 5788899999999999999999999999999999999988 99999999999999 664211 13
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLV 237 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~-~~v~~~ls~~~~~l~ 237 (419)
.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++..+ +++++.+++++..++
T Consensus 77 ~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (334)
T 3pko_A 77 QLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRIL 156 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999998765 899999999999999
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCcccc
Q 014738 238 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 317 (419)
Q Consensus 238 ~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~ 317 (419)
.||.+|+.+..+...++++|++++.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+
T Consensus 157 ~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~ 236 (334)
T 3pko_A 157 QGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRT 236 (334)
T ss_dssp HHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSC
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhc
Confidence 99999999887778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCcccHHHHHHhhhCc-hHHHHHH-cccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 014738 318 GKGSLSDIRHGIITAPILFAMEEFP-QLRTVVE-QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 395 (419)
Q Consensus 318 GK~~~~Dl~~gk~TlPll~Al~~~~-~~~~~l~-~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~ 395 (419)
|||.|+||++||+|+|+++|++..+ ++++++. +...++++++++++++.++|++++|++.+++|.++|.+.|+.+|++
T Consensus 237 GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~ 316 (334)
T 3pko_A 237 QKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVG 316 (334)
T ss_dssp CHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred CCCCCCccccCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999865 5677773 3445778999999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 014738 396 NDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 396 ~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
+ +++.|.+|++++++|++
T Consensus 317 ~------~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 317 S------AQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp H------HHHHHHHHHHHHTTCC-
T ss_pred H------HHHHHHHHHHHHHhccC
Confidence 8 99999999999999975
No 6
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=4e-70 Score=548.05 Aligned_cols=315 Identities=29% Similarity=0.428 Sum_probs=275.6
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
.+....+.++++.|+..|++.+.+.+|.+.++++|++..| |||+||.+++++++++|.... +
T Consensus 34 ~~~~~~l~~~l~~ve~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~ll~~~~~~~~~~----------------~ 95 (360)
T 3lmd_A 34 PELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAG--GKRFRPMFALLASEFGEKPLS----------------E 95 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCC--SCCHHHHHHHHHHTTSSSTTC----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHhCCCCh----------------H
Confidence 5567899999999999999999999999999999999988 999999999999998872221 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 238 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~ 238 (419)
.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++++ +++++.+++++..++.
T Consensus 96 ~~~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~ 174 (360)
T 3lmd_A 96 NVIKAAVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVT 174 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999876 5899999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccC
Q 014738 239 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 318 (419)
Q Consensus 239 Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~G 318 (419)
||.+|+.+..+. .++++|++++++|||+||+++|++|++++|++++..+.++.||.++|+||||+||++|++++++.+|
T Consensus 175 GQ~ldl~~~~~~-~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~G 253 (360)
T 3lmd_A 175 GQMRETVGPRDT-DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESG 253 (360)
T ss_dssp HHHHHHHCCTTS-CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHhccCCC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhC
Confidence 999999998776 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcccHHHHHHhhhCc----hHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC
Q 014738 319 KGSLSDIRHGIITAPILFAMEEFP----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 394 (419)
Q Consensus 319 K~~~~Dl~~gk~TlPll~Al~~~~----~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~ 394 (419)
|+.|+||++||+|+|+++|++..+ .+.+++.+...+++++++++++|+++|++++|+.++++|.++|.+.|+.||+
T Consensus 254 K~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~ 333 (360)
T 3lmd_A 254 KTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPD 333 (360)
T ss_dssp --CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCchhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999998742 4566666666678899999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhccC
Q 014738 395 NNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 395 ~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
++ +|+.|.+|++++++|+.
T Consensus 334 ~~------~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 334 ST------VKEALRNLATFTVKRVG 352 (360)
T ss_dssp SH------HHHHHHHHHHHHHHTTS
T ss_pred cH------HHHHHHHHHHHHHHhcc
Confidence 88 99999999999999963
No 7
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=1.4e-69 Score=543.61 Aligned_cols=313 Identities=25% Similarity=0.344 Sum_probs=288.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHH-----------hCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchh
Q 014738 82 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFF-----------KMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVED 150 (419)
Q Consensus 82 ~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~-----------~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~ 150 (419)
...+..-.+.|+..|++.+.+.+|.+.+++.|.+ ..| |||+||+|++++++++|++.+
T Consensus 6 ~~~l~~~~~~v~~~l~~~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~g--GKrlRp~l~ll~~~~~g~~~~--------- 74 (352)
T 3nf2_A 6 TALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDG--GKAVRPALAVLSAEVTGAAPE--------- 74 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCC--CCCHHHHHHHHHHHTTTCCGG---------
T ss_pred HHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHhcccccccccCcCCC--cccHHHHHHHHHHHHcCCCHH---------
Confidence 4577777888999999999999999999999998 456 999999999999999987432
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCCh---HHHH
Q 014738 151 ALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT---EVVT 227 (419)
Q Consensus 151 ~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~---~v~~ 227 (419)
.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++|+..+++.+++ ++++
T Consensus 75 --------~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~ 146 (352)
T 3nf2_A 75 --------VGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATR 146 (352)
T ss_dssp --------GGHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999887 7899
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q 014738 228 LLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 307 (419)
Q Consensus 228 ~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~ 307 (419)
.+++++..+++||++|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.++.||++||+||||+||+
T Consensus 147 ~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ 226 (352)
T 3nf2_A 147 RLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDL 226 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998777899999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCccccCCCCccccccCcccHHHHHHhhhC-c---hHHHHHHcc-------cCChhHHHHHHHHHHhcchHHHHHH
Q 014738 308 LDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-P---QLRTVVEQG-------FEDSSNVDIALEYLGKSRGIQKTRE 376 (419)
Q Consensus 308 lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~-~---~~~~~l~~~-------~~~~~~~~~i~~li~~~g~i~~a~~ 376 (419)
+||+++++.+|||.|+||++||+|+|+++|++.. + ++..++.+. ..+++++++++++|+++|++++|++
T Consensus 227 ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~ 306 (352)
T 3nf2_A 227 LGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTAD 306 (352)
T ss_dssp HHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHH
Confidence 9999999999999999999999999999999874 3 355566543 2467889999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCC-CCCcchHHHHHHHHHHHHHHHhccC
Q 014738 377 LAVKHANLAAAAIDSLPE-NNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 377 ~a~~~~~~A~~~L~~lp~-~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
++++|.++|.+.|+.+|+ ++ +|+.|..|++++++|..
T Consensus 307 ~a~~~~~~A~~~L~~lp~~~~------~r~~L~~la~~~~~R~~ 344 (352)
T 3nf2_A 307 EARRQHTIAIEALDAVDMPDR------VRDRFTALADFVVVRKR 344 (352)
T ss_dssp HHHHHHHHHHHHHTTSCCCHH------HHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHHHhccc
Confidence 999999999999999998 55 99999999999999963
No 8
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.9e-69 Score=539.74 Aligned_cols=314 Identities=28% Similarity=0.389 Sum_probs=289.4
Q ss_pred chhhHHHHHHHHHHHHHHhhhhC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014738 81 PFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 159 (419)
Q Consensus 81 ~~~~i~~el~~v~~~l~~~v~~~-~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
.+..+.++++.|+..|.+.+... +|.+.+++.|++..| |||+||.|++++++++|++. +.
T Consensus 7 ~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~ 67 (342)
T 1wy0_A 7 LFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGDP-----------------LR 67 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGT--CCCHHHHHHHHHTTTTTSCG-----------------GG
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------HH
Confidence 45678889999999999999877 789999999999988 99999999999999987642 14
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcC-----CChHHHHHHHHHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVE 234 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~-----~~~~v~~~ls~~~~ 234 (419)
+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++. .+.++++.+++++.
T Consensus 68 ~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
T 1wy0_A 68 AIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASN 147 (342)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999987 45689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCc
Q 014738 235 HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 314 (419)
Q Consensus 235 ~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~ 314 (419)
.++.||.+|+.+..+..+++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++++
T Consensus 148 ~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~ 227 (342)
T 1wy0_A 148 ELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADE 227 (342)
T ss_dssp HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 99999999999987777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccccCcccHHHHHHhhhCc-hHHHHHHcccCC---------------hhHHHHHHHHHHhcchHHHHHHHH
Q 014738 315 ASLGKGSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGFED---------------SSNVDIALEYLGKSRGIQKTRELA 378 (419)
Q Consensus 315 ~~~GK~~~~Dl~~gk~TlPll~Al~~~~-~~~~~l~~~~~~---------------~~~~~~i~~li~~~g~i~~a~~~a 378 (419)
+.+|||.|+||++||+|+|++++++..+ ..+..+.+.+.. +++++++++++.++|+++++++.+
T Consensus 228 ~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~ 307 (342)
T 1wy0_A 228 KKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIA 307 (342)
T ss_dssp HHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHH
Confidence 9999999999999999999999998754 444555544432 567899999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 379 VKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 379 ~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
++|.++|.+.|+.+|+++ .++.|.+|++++++|++
T Consensus 308 ~~~~~~A~~~L~~l~~~~------~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 308 KDMIKKANEALRILPKSK------ARMDLELLAKFIVEREY 342 (342)
T ss_dssp HHHHHHHHTTGGGSCCCH------HHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhccC
Confidence 999999999999999887 89999999999999974
No 9
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=7.3e-69 Score=534.22 Aligned_cols=314 Identities=28% Similarity=0.415 Sum_probs=290.2
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
...+..+.++++.|+..|.+.+...+|.+.++++|++..| |||+||.+++++++++|++. +
T Consensus 4 l~~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKr~Rp~l~l~~~~~~g~~~-----------------~ 64 (325)
T 3aqb_B 4 LSYKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLLSGFLNDTQK-----------------D 64 (325)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHTTSSCCC-----------------H
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------H
Confidence 3456778899999999999999888899999999999988 99999999999999987642 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 238 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~ 238 (419)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..++++++.+++++..+++
T Consensus 65 ~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 144 (325)
T 3aqb_B 65 DLIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCF 144 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccC
Q 014738 239 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 318 (419)
Q Consensus 239 Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~G 318 (419)
||.+|+.+..+...++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+|
T Consensus 145 GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~G 224 (325)
T 3aqb_B 145 GEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLG 224 (325)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred HHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcC
Confidence 99999998877778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcccHHHHHHhhhCch-----HH---HHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014738 319 KGSLSDIRHGIITAPILFAMEEFPQ-----LR---TVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 390 (419)
Q Consensus 319 K~~~~Dl~~gk~TlPll~Al~~~~~-----~~---~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 390 (419)
||.|+||++||+|+|++++++..+. +. +.+.+.. .+++++++++++.++ ++++|+..+++|.++|.+.|+
T Consensus 225 K~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~ 302 (325)
T 3aqb_B 225 KPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTS-DDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLS 302 (325)
T ss_dssp SCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTC-CHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986432 33 3332222 267889999999999 999999999999999999999
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 391 SLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 391 ~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
.+|+++ .|+.|..|++++++|++
T Consensus 303 ~lp~~~------~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 303 QLQDSN------IKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp TSCCCH------HHHHHHHHHHHHTTTTC
T ss_pred hCCCcH------HHHHHHHHHHHHHhCcC
Confidence 999988 99999999999999975
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=2.2e-67 Score=528.99 Aligned_cols=309 Identities=25% Similarity=0.354 Sum_probs=277.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHH
Q 014738 83 SLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 161 (419)
Q Consensus 83 ~~i~~el~~v~~~l~~~v~~~-~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~ 161 (419)
.+++..++.|++.|.+.+... +|.+.+++.|++..| |||+||.|++++++++|++.. .+.
T Consensus 8 ~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~ 68 (358)
T 4dhd_A 8 RLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTG--GKRLRPLLTLAAAEAVSGQWR-----------------PAL 68 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSC--CCCHHHHHHHHHHHHHHSCCG-----------------GGH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHH
Confidence 455667888999999999887 789999999999988 999999999999999987532 567
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHH
Q 014738 162 CIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGE 240 (419)
Q Consensus 162 ~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~-~~v~~~ls~~~~~l~~Gq 240 (419)
.+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++|+..+..... .++++.+++++..++.||
T Consensus 69 ~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ 148 (358)
T 4dhd_A 69 PAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGE 148 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999976554 689999999999999999
Q ss_pred HHhhccc-----------CCC-CCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Q 014738 241 TMQMTTS-----------SDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 308 (419)
Q Consensus 241 ~~dl~~~-----------~~~-~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~l 308 (419)
.+|+.+. .+. ..++++|++|+.+|||+||++||++|++++|++++..+.++.||.++|+||||+||++
T Consensus 149 ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~l 228 (358)
T 4dhd_A 149 RLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVL 228 (358)
T ss_dssp HHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 444 6799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccCCCCccccccCcc-cHHHHHHhhhC-c----hHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHH
Q 014738 309 DFTGTSASLGKGSLSDIRHGII-TAPILFAMEEF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 382 (419)
Q Consensus 309 D~~g~~~~~GK~~~~Dl~~gk~-TlPll~Al~~~-~----~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~ 382 (419)
|++|+++.+|||.|+||++||+ |+|+++|++.. + .+.+++.+...+++++++++++|+++|++++|+.++++|.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~ 308 (358)
T 4dhd_A 229 DIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYR 308 (358)
T ss_dssp HHHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999974 2 3566777766678899999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 383 NLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 383 ~~A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
++|.+.|+.||+++ .|.+|++++++|++
T Consensus 309 ~~A~~~L~~lp~~~---------~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 309 EEAERHLAKIPNNG---------TLKELLDFIVAREY 336 (358)
T ss_dssp HHHHHHHTTSSSCH---------HHHHHHHHHTTTTT
T ss_pred HHHHHHHHcCCCCH---------HHHHHHHHHHhccc
Confidence 99999999999543 89999999999974
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=3.1e-67 Score=523.53 Aligned_cols=306 Identities=25% Similarity=0.265 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHH
Q 014738 86 ADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 165 (419)
Q Consensus 86 ~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 165 (419)
......|++.|.+.+...+|.+.++++|++..| |||+||.+++++++++|++. +.+..+|+
T Consensus 6 ~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~ 66 (330)
T 1wmw_A 6 EAIRQALQERLLARLDHPDPLYRDLLQDYPRRG--GKMLRGLLTVYSALAHGAPL-----------------EAGLEAAT 66 (330)
T ss_dssp HHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------HHHHHHHH
Confidence 455667888899988878899999999999988 99999999999999998631 36789999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHHHHHH
Q 014738 166 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVVEHLVTGE 240 (419)
Q Consensus 166 avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~-----~~v~~~ls~~~~~l~~Gq 240 (419)
++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..+ +++++.+++++..++.||
T Consensus 67 avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ 146 (330)
T 1wmw_A 67 ALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQ 146 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987543 789999999999999999
Q ss_pred HHhhcc-cCC-CCCCHHHHHHHHhhhhhch-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCcccc
Q 014738 241 TMQMTT-SSD-QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 317 (419)
Q Consensus 241 ~~dl~~-~~~-~~~s~~~yl~~i~~KTasL-~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~ 317 (419)
.+|+.+ ..+ ...++++|++|+++|||+| |++||++|++++|.+++.. +++||.++|+||||+||++|++++++ +
T Consensus 147 ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~ 223 (330)
T 1wmw_A 147 HLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-Y 223 (330)
T ss_dssp HHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-C
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-c
Confidence 999998 766 5789999999999999999 9999999999999988766 99999999999999999999999999 9
Q ss_pred CCCCccccccCcccHHHHHHhhhCc-hHHHHHHccc----CC--hhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014738 318 GKGSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGF----ED--SSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 390 (419)
Q Consensus 318 GK~~~~Dl~~gk~TlPll~Al~~~~-~~~~~l~~~~----~~--~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 390 (419)
|||.|+||++||+|+|+++|++..+ ..+..+...+ .+ +++++++++++.++|++++|+.++++|.++|.+.|+
T Consensus 224 GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~ 303 (330)
T 1wmw_A 224 GKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLE 303 (330)
T ss_dssp SSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764 3333333322 22 678999999999999999999999999999999999
Q ss_pred ----cCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 391 ----SLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 391 ----~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
.+|+++ .++.|..|++++++|++
T Consensus 304 ~~i~~lp~~~------~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 304 AAFQDLPGKE------ALDHLRGLLAALVERRA 330 (330)
T ss_dssp TGGGGCSCHH------HHHHHHHHHHHHHHC--
T ss_pred HHhhcCCCcH------HHHHHHHHHHHHHhccC
Confidence 999877 89999999999999975
No 12
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=1e-65 Score=505.45 Aligned_cols=281 Identities=24% Similarity=0.384 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHH
Q 014738 85 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 164 (419)
Q Consensus 85 i~~el~~v~~~l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA 164 (419)
+.+|++.|+..|++.+...+| ++++|++..| |||+||.+++++++++|+..+ +.+..+|
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~---~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~----------------~~~~~~A 67 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP---EQIMKDLPLY--GKMLRVRLSILSFKNRGVEIG----------------EDAISSL 67 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC---HHHHTTSCCC--CCCHHHHHHHHHHHHHTCCCC----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCH---HHHHHHHhCC--CCcHHHHHHHHHHHHcCCCCh----------------hHHHHHH
Confidence 677899999999998877666 8999999888 999999999999999986211 2578899
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhh
Q 014738 165 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 244 (419)
Q Consensus 165 ~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl 244 (419)
+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++..++++++.+++++..+++||.+|+
T Consensus 68 ~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl 147 (299)
T 1v4e_A 68 AALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQ 147 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccc
Q 014738 245 TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 324 (419)
Q Consensus 245 ~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~D 324 (419)
.+..+. .++++|++++.+|||+||++||++|++++|.++ +.+++||.++|+||||+||++|++++ +.+|||.|+|
T Consensus 148 ~~~~~~-~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~D 222 (299)
T 1v4e_A 148 LSRYKP-ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLD 222 (299)
T ss_dssp HHTTSC-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCC
T ss_pred HccCCC-CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchH
Confidence 988766 899999999999999999999999999999987 88999999999999999999999999 9999999999
Q ss_pred cccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014738 325 IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 396 (419)
Q Consensus 325 l~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 396 (419)
+++||+|+|++++++..+.+++++.+ ++++++++++.++|++++|+..+++|.++|.+.|+.||+..
T Consensus 223 l~egK~T~p~l~al~~~~~l~~~l~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 223 LKNGVASFPLVTAMEKFPEARQMFEN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp CTTTTCCHHHHHHHHHCHHHHHHHHT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred hhCCCchHHHHHHHHhChHHHHHHhH-----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999987666666654 57889999999999999999999999999999999999886
No 13
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=6e-65 Score=514.46 Aligned_cols=321 Identities=23% Similarity=0.286 Sum_probs=264.4
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhCchh---HHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAEVPK---LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 155 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~~p~---l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~ 155 (419)
.+....|+++|+.+-......+....|. +.+.+.|++..| |||+||+|++++++++|+..+.. .
T Consensus 19 ~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~~~-----------~ 85 (380)
T 3lk5_A 19 DKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNG--GKRIRPLYAWAGFLAAQGHKNSS-----------E 85 (380)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHTTSCCS-----------S
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHcCCCcccc-----------C
Confidence 4455677788887776666555544554 566677887878 99999999999999998641100 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhc----------------cCHHHHHHHHHHHHHHHHHHHHc
Q 014738 156 LRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV----------------MGNKLAVLAGDFLLSRACVALAS 219 (419)
Q Consensus 156 ~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~----------------~G~~~AVl~GD~Lla~A~~~la~ 219 (419)
..+.++.+|+++||||+||||||||||+|++|||+||+|.+ ||++.|||+||||+++|+.++++
T Consensus 86 ~~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~ 165 (380)
T 3lk5_A 86 KLESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQD 165 (380)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 12478899999999999999999999999999999999997 69999999999999999999998
Q ss_pred CCC-----hHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhch-HHHHHHHHHHHcCCCHHHHHHHHHH
Q 014738 220 LKN-----TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDY 293 (419)
Q Consensus 220 ~~~-----~~v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL-~~~a~~~ga~lag~~~~~~~~l~~~ 293 (419)
... .++++.++.+...++.||.+|+.+..+...++++|++|+.+|||+| |++||++|++++|++++..+.++.|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~ 245 (380)
T 3lk5_A 166 SGLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHY 245 (380)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 653 2567788888899999999999988776789999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHHHhhhC----chHHHHHHccc---CChhHHHHHHHHHH
Q 014738 294 GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF----PQLRTVVEQGF---EDSSNVDIALEYLG 366 (419)
Q Consensus 294 G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~----~~~~~~l~~~~---~~~~~~~~i~~li~ 366 (419)
|.+||+||||+||++|++|+++.+|||.|+||++||.|+|+++|++.. |..++.+...+ .+++++++++++|.
T Consensus 246 G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~ 325 (380)
T 3lk5_A 246 GHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIR 325 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999863 33334333322 35778999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhccCCCC-CCcchHHHHHHHHHHHHHHHhcc
Q 014738 367 KSRGIQKTRELAVKHANLAAAAIDSLPEN-NDEDVTKSRRALLDLTHRVITRN 418 (419)
Q Consensus 367 ~~g~i~~a~~~a~~~~~~A~~~L~~lp~~-~~~~~~~~r~~L~~L~~~v~~R~ 418 (419)
++|++++++.++++|.++|.+.|+.+|.+ + +|+.|.+|++++..|.
T Consensus 326 ~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~------~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 326 ATGAEEEVEQRISQLTESGLAHLDDVDIPDE------VRAQLRALAIRSTERR 372 (380)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHGGGSCCCHH------HHHHHHHHHHHHHC--
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999964 5 9999999999999885
No 14
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=6.5e-65 Score=502.69 Aligned_cols=299 Identities=27% Similarity=0.351 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHhhhh-CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHH
Q 014738 88 ELSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 166 (419)
Q Consensus 88 el~~v~~~l~~~v~~-~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~a 166 (419)
-++.|++.|.+.+.. ..|.+.. .|.+..| |||+||.|++++++. +.. ....+++..+|++
T Consensus 5 ~~~~i~~~l~~~~~~~~~~~~~~--~y~~~~g--GKrlRp~l~l~~~~~-~~~--------------~~~~~~~~~~A~a 65 (315)
T 3tc1_A 5 QLKAIQNKIASWIKEIESGFIDE--LFSKIGP--SKMLRSKLMLALLNE-KTD--------------AILLDKALNLCTI 65 (315)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHH--HHTTCCC--CCCHHHHHHHTTCCT-TCC--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHH--HHHhcCC--cccHHHHHHHHHhcc-Ccc--------------ccchhhHHHHHHH
Confidence 356677888877763 3344433 5777777 999999999998772 110 0112467899999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhcc
Q 014738 167 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTT 246 (419)
Q Consensus 167 vEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~ 246 (419)
+||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++.+ +++++.+++++..++.||.+|+.+
T Consensus 66 iEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~ 144 (315)
T 3tc1_A 66 VEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFV 144 (315)
T ss_dssp HHHHHHHHHHHHHTC----------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999887 899999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccc
Q 014738 247 SSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 326 (419)
Q Consensus 247 ~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~ 326 (419)
..+...++++|++++++|||+||++||++|++++|++ .+.++.||.++|+||||+||++|++++++.+|||.|+|++
T Consensus 145 ~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~ 221 (315)
T 3tc1_A 145 GECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFK 221 (315)
T ss_dssp TTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGG
T ss_pred CCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHH
Confidence 8777899999999999999999999999999999998 6789999999999999999999999999999999999999
Q ss_pred cCcccHHHHHHhhhC-chHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH
Q 014738 327 HGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS 403 (419)
Q Consensus 327 ~gk~TlPll~Al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~ 403 (419)
+||+|+|+++|++.. +..++.+...+. ++++++++++++.++|++++|+.++++|.++|.+.|+.||+++ +
T Consensus 222 egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~------~ 295 (315)
T 3tc1_A 222 EGKTTLPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLI------L 295 (315)
T ss_dssp GTCCCHHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHH------H
T ss_pred cCChhHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------H
Confidence 999999999999974 444444443332 6788999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHH
Q 014738 404 RRALLDLTHRVI 415 (419)
Q Consensus 404 r~~L~~L~~~v~ 415 (419)
|+.|..|++++.
T Consensus 296 r~~L~~l~~~~~ 307 (315)
T 3tc1_A 296 EKLAQDVISRTF 307 (315)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 15
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=2e-65 Score=512.15 Aligned_cols=304 Identities=18% Similarity=0.280 Sum_probs=239.2
Q ss_pred HHHHHHHhh---hhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHH
Q 014738 92 LAKRLRSMV---VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 168 (419)
Q Consensus 92 v~~~l~~~v---~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 168 (419)
|+..+.+.+ ...++.+.+++.|++..| |||+||.|++++++++|.+. +.+..+|+++|
T Consensus 10 v~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~avE 70 (340)
T 2e8v_A 10 IDELINNDPVWSSQNESLISKPYNHILLKP--GKNFRLNLIVQINRVMNLPK-----------------DQLAIVSQIVE 70 (340)
T ss_dssp HHHHHTSCCCCCHHHHHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHH
T ss_pred HHHHHHhcccccccChHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHH
Confidence 555555555 456678999999999988 99999999999999998531 25788999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChH-----HHHHHHHHHHHHHHHHHHh
Q 014738 169 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE-----VVTLLATVVEHLVTGETMQ 243 (419)
Q Consensus 169 liH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~-----v~~~ls~~~~~l~~Gq~~d 243 (419)
|||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..+++ +++.+++++..+++||.+|
T Consensus 71 liH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ld 150 (340)
T 2e8v_A 71 LLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLD 150 (340)
T ss_dssp HHHHHHHHHHHHHTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988777 9999999999999999999
Q ss_pred hcccCCC---CCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCC
Q 014738 244 MTTSSDQ---RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 320 (419)
Q Consensus 244 l~~~~~~---~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~ 320 (419)
+.+..+. ..++++|++++++|||+||+++|++|++++|.++ ..+.++.||.++|+||||+||++|++++++.+|||
T Consensus 151 l~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~ 229 (340)
T 2e8v_A 151 IYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKG 229 (340)
T ss_dssp HHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCC
T ss_pred HHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCC
Confidence 9876543 5799999999999999999999999999999987 47899999999999999999999999999999999
Q ss_pred CccccccCcccHHHHHHhhhCch---------HHHHHHcccCChhHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH--
Q 014738 321 SLSDIRHGIITAPILFAMEEFPQ---------LRTVVEQGFEDSSNVDIALEYLG-KSRGIQKTRELAVKHANLAAAA-- 388 (419)
Q Consensus 321 ~~~Dl~~gk~TlPll~Al~~~~~---------~~~~l~~~~~~~~~~~~i~~li~-~~g~i~~a~~~a~~~~~~A~~~-- 388 (419)
.|+||++||.|+|+++|++..+. +..++.+...+.+..++++++|. ++|++++|+.++++|.++|.+.
T Consensus 230 ~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~ 309 (340)
T 2e8v_A 230 FAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNE 309 (340)
T ss_dssp TTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC--
T ss_pred chhhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999986432 55566554444444558999999 9999999999999999999999
Q ss_pred ---hccCCCCCCcchHHHHHHHHHHHHHHHh
Q 014738 389 ---IDSLPENNDEDVTKSRRALLDLTHRVIT 416 (419)
Q Consensus 389 ---L~~lp~~~~~~~~~~r~~L~~L~~~v~~ 416 (419)
|+.||+++.. ...+|+.|..|++++.+
T Consensus 310 ~~~L~~lp~~~~~-~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 310 NKYLPDLASHSDT-ATNLHDELLYIIDHLSE 339 (340)
T ss_dssp -------------------------------
T ss_pred cccHhhCCCCccc-cHHHHHHHHHHHHHHHh
Confidence 9999987611 22278999999999865
No 16
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=3.3e-65 Score=502.46 Aligned_cols=292 Identities=21% Similarity=0.264 Sum_probs=254.2
Q ss_pred HHHhhhhCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHH
Q 014738 96 LRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASL 175 (419)
Q Consensus 96 l~~~v~~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsL 175 (419)
+++.+.+.+|.+.++++|++..| |||+||.+++++++++|.+. +.+..+|+++||||+|||
T Consensus 2 ~~k~~~~~~~~l~~~~~y~~~~g--GKr~Rp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asL 62 (301)
T 2q80_A 2 MEKTQETVQRILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVPE-----------------DKLQIIIEVTEMLHNASL 62 (301)
T ss_dssp -----CCHHHHHTHHHHHHTTSS--CHHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHH
Confidence 56777777889999999999988 99999999999999987531 257889999999999999
Q ss_pred hhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCH
Q 014738 176 LHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM 254 (419)
Q Consensus 176 IHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~ 254 (419)
|||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..++++++.+++++..+++||.+|+.+..+. ..++
T Consensus 63 iHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~ 142 (301)
T 2q80_A 63 LIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTE 142 (301)
T ss_dssp HHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHccccCCCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Confidence 999999999999999999999999999999999999999999998888899999999999999999999875443 6799
Q ss_pred HHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHH
Q 014738 255 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 334 (419)
Q Consensus 255 ~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPl 334 (419)
++|++++++|||+||+++|++|++++|.++ .+++||.++|+||||+||++|++++++.+|||.|+||++||.|+|+
T Consensus 143 ~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~ 218 (301)
T 2q80_A 143 EEYKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 218 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHH
Confidence 999999999999999999999999999874 4899999999999999999999999999999999999999999999
Q ss_pred HHHhhhCc---hHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 014738 335 LFAMEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 411 (419)
Q Consensus 335 l~Al~~~~---~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~L~ 411 (419)
++|++..+ .+...+.+...+.+..+.++++|+++|++++|++++++|.++|.+.|+.+|+++ .|..++
T Consensus 219 i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~---------~L~~l~ 289 (301)
T 2q80_A 219 IHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP---------ELVALV 289 (301)
T ss_dssp HHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH---------HHHHHH
T ss_pred HHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH---------HHHHHH
Confidence 99998654 366666555444444445999999999999999999999999999999999776 389999
Q ss_pred HHHHhccC
Q 014738 412 HRVITRNK 419 (419)
Q Consensus 412 ~~v~~R~~ 419 (419)
+++..|.|
T Consensus 290 ~~l~~~~~ 297 (301)
T 2q80_A 290 KHLSKMFK 297 (301)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhc
Confidence 99988754
No 17
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1.3e-63 Score=493.94 Aligned_cols=281 Identities=26% Similarity=0.357 Sum_probs=241.3
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 155 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~---~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~ 155 (419)
.+++..++++++.|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.+
T Consensus 31 ~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-------------- 94 (324)
T 3uca_A 31 EDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVG--GKRIRPILMLLSYYIYKSDYK-------------- 94 (324)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHTTCSCGG--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH--------------
Confidence 5567789999999999999999865 788999999999988 999999999999999987532
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC--C----hHHHH
Q 014738 156 LRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N----TEVVT 227 (419)
Q Consensus 156 ~~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~--~----~~v~~ 227 (419)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||..+++.. + .++++
T Consensus 95 ---~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~ 171 (324)
T 3uca_A 95 ---KILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATK 171 (324)
T ss_dssp ---GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 5678999999999999999999 99999999999999999999999999999999999988743 1 46788
Q ss_pred HHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhh
Q 014738 228 LLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLID 305 (419)
Q Consensus 228 ~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~D 305 (419)
.++++. ..++.||.+|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+|
T Consensus 172 ~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~D 251 (324)
T 3uca_A 172 IIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKD 251 (324)
T ss_dssp HHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888876 689999999999987767899999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 014738 306 DVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 385 (419)
Q Consensus 306 D~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A 385 (419)
|++|++++++.+|||+|+|+++||.|||++++ +++|++.+++|.++|
T Consensus 252 DiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~a---------------------------------l~~a~~~a~~~~~~A 298 (324)
T 3uca_A 252 DILDVVGNAKDLGKNVHKDQESNKNNYITIFG---------------------------------LEECKKKCVNITEEC 298 (324)
T ss_dssp HHHHHCCC-----------------CHHHHHC---------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHhCCCcchHhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999994 578899999999999
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 386 AAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 386 ~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
.+.|+.||++. +.|.+|++++++|++
T Consensus 299 ~~~L~~l~~~~--------~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 299 IEILSSIKGNT--------EPLKVLTMKLLERKF 324 (324)
T ss_dssp HHHHHTSSSCC--------HHHHHHHHHHHHCCC
T ss_pred HHHHHhCCCcH--------HHHHHHHHHHHhccC
Confidence 99999999754 789999999999975
No 18
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=8e-63 Score=486.98 Aligned_cols=279 Identities=27% Similarity=0.378 Sum_probs=229.4
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhC--chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014738 80 DPFSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 157 (419)
Q Consensus 80 d~~~~i~~el~~v~~~l~~~v~~~--~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~ 157 (419)
+....++.....|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.
T Consensus 4 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~----------------- 64 (317)
T 4f62_A 4 NLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNG--GKRIRPMLTYASAQLVGDIS----------------- 64 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-C--CCCHHHHHHHHHHHHHSCCC-----------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCH-----------------
Confidence 444567788889999999998764 678999999999988 99999999999999998752
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC------hHHHHHH
Q 014738 158 TRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLL 229 (419)
Q Consensus 158 ~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~------~~v~~~l 229 (419)
+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++..+ .++++.+
T Consensus 65 ~~~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~l 144 (317)
T 4f62_A 65 SLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQEL 144 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 26789999999999999999999 999999999999999999999999999999999999998642 2577888
Q ss_pred HHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhh
Q 014738 230 ATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDD 306 (419)
Q Consensus 230 s~~~--~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DD 306 (419)
++++ ..++.||.+|+.+... ..++++|++|+.+|||+||++||++|++++| ++++..+.+++||.++|+||||+||
T Consensus 145 a~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DD 223 (317)
T 4f62_A 145 VVASGRNGMITGQMIDLSSENK-NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDD 223 (317)
T ss_dssp HHHHSTTTHHHHHHHHHHTSSS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhHHHHHhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 4799999999998754 4899999999999999999999999999999 8999999999999999999999999
Q ss_pred hhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 014738 307 VLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 386 (419)
Q Consensus 307 ~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~ 386 (419)
++|++++++.+||+.|+|+++||+|+|+++ |+++|++.+++|.++|.
T Consensus 224 iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~~~A~ 270 (317)
T 4f62_A 224 IIDLTSDTETLGKTQFSDAEANKATYPKLL---------------------------------GLDGAKALVVRLHEQAI 270 (317)
T ss_dssp HHHTC----------------CCCCHHHHH---------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHhccCChHhhCCCcchHHhcCCCcHHHHH---------------------------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 46889999999999999
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 387 AAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 387 ~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
++|+.||+ .++.|.+|++++++|++
T Consensus 271 ~~L~~l~~--------~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 271 AQISEFGD--------KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp HHHGGGGG--------GGHHHHHHHHHHHC---
T ss_pred HHHHhCch--------hHHHHHHHHHHHHHhcc
Confidence 99999985 35899999999999974
No 19
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=4.9e-63 Score=489.86 Aligned_cols=280 Identities=26% Similarity=0.325 Sum_probs=242.6
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 155 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~---~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~ 155 (419)
.+....+.+....|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 7 ~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-------------- 70 (324)
T 3ts7_A 7 RSLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGG--GKRMRPLLTYATGQTIGVAAD-------------- 70 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCGG--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH--------------
Confidence 4555678888999999999988753 578999999999988 999999999999999987532
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC--C------hHH
Q 014738 156 LRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEV 225 (419)
Q Consensus 156 ~~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~--~------~~v 225 (419)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++.. + .++
T Consensus 71 ---~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~ 147 (324)
T 3ts7_A 71 ---LLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAM 147 (324)
T ss_dssp ---GTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHH
Confidence 5688999999999999999999 99999999999999999999999999999999999999874 2 257
Q ss_pred HHHHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHh
Q 014738 226 VTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQ 302 (419)
Q Consensus 226 ~~~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQ 302 (419)
++.+++++ ..++.||.+|+.+..+ ..++++|++++++|||+||++||++|++++| ++++..+.+++||.+||+|||
T Consensus 148 i~~la~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQ 226 (324)
T 3ts7_A 148 IETLAKASGPAGMVGGQAIDLASVGK-KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQ 226 (324)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHhHHHHHHccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888875 7899999999998776 7899999999999999999999999999999 999999999999999999999
Q ss_pred hhhhhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHH
Q 014738 303 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 382 (419)
Q Consensus 303 I~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~ 382 (419)
|+||++|++++++.+||+.|+|+++||.|+|+++ |+++|++.+++|.
T Consensus 227 I~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~ 273 (324)
T 3ts7_A 227 IQDDILDEESDTQTLGKTRGKDRDHNKPNYPALL---------------------------------GLSGAKEKAEEMH 273 (324)
T ss_dssp HHHHHHHHTCC---------------CCCHHHHH---------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCCccchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 4688999999999
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 383 NLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 383 ~~A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
++|.++|+.||++. +.|.+|++++++|++
T Consensus 274 ~~A~~~L~~l~~~~--------~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 274 EAALESLAGFGPEA--------DLLRELARFIIQRQS 302 (324)
T ss_dssp HHHHHTTTTCCGGG--------HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 99999999998653 789999999999974
No 20
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=1.8e-62 Score=494.98 Aligned_cols=299 Identities=16% Similarity=0.144 Sum_probs=262.1
Q ss_pred hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014738 105 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 184 (419)
Q Consensus 105 p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 184 (419)
+.+.++..|.+ .| |||+||.+++++++++|++...+ ......+.+.+..+|+++||||+||||||||||+|
T Consensus 34 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~~------~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s 104 (362)
T 1yhl_A 34 RYLRIMMDTTC-LG--GKYFRGMTVVNVAEGFLAVTQHD------EATKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104 (362)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhc-CC--cccHHHHHHHHHHHHhCCCcCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 46888888887 48 99999999999999997642100 00001122334458899999999999999999999
Q ss_pred CCCCCCCcchhccCH--HHHHHHHHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHHHHHHhhccc----------
Q 014738 185 DTRRGIGSLNFVMGN--KLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTS---------- 247 (419)
Q Consensus 185 ~~RRG~pt~h~~~G~--~~AVl~GD~Lla~A~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~---------- 247 (419)
++|||+||+|.+||+ ++|||+||||+++|+..++.. .+.++++.+++++..+++||.+|+.+.
T Consensus 105 ~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~ 184 (362)
T 1yhl_A 105 VMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEV 184 (362)
T ss_dssp CEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTS
T ss_pred CCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Confidence 999999999999999 589999999999999999875 347899999999999999999999876
Q ss_pred -C--CC---CCCHHHHHHHHhhhhhch-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCC
Q 014738 248 -S--DQ---RCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 319 (419)
Q Consensus 248 -~--~~---~~s~~~yl~~i~~KTasL-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK 319 (419)
. +. ..++++|++|+++|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+||
T Consensus 185 ~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK 264 (362)
T 1yhl_A 185 AQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK 264 (362)
T ss_dssp CCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS
T ss_pred ccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC
Confidence 3 22 479999999999999999 9999999999999 88888899999999999999999999999999999999
Q ss_pred CCccccccCcccHHHHHHhhhCc-hHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014738 320 GSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 396 (419)
Q Consensus 320 ~~~~Dl~~gk~TlPll~Al~~~~-~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 396 (419)
.|+||++||+|+|+++|++..+ ..++.+.+.+. ++++++++++++.++|+++++++.+++|.++|.+.|+.||+++
T Consensus 265 -~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~ 343 (362)
T 1yhl_A 265 -VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKS 343 (362)
T ss_dssp -CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999998754 45555544443 3678899999999999999999999999999999999999998
Q ss_pred CcchHHHH--HHHHHHHHHHHhccC
Q 014738 397 DEDVTKSR--RALLDLTHRVITRNK 419 (419)
Q Consensus 397 ~~~~~~~r--~~L~~L~~~v~~R~~ 419 (419)
+| +.|..|++++++|+|
T Consensus 344 ------~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 344 ------PTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp ------HHHHHHHHHHHHHHHTCCC
T ss_pred ------hhHHHHHHHHHHHHHhccC
Confidence 88 999999999999986
No 21
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=2.7e-63 Score=488.58 Aligned_cols=281 Identities=26% Similarity=0.375 Sum_probs=255.8
Q ss_pred chhhHHHHHHHHHHHHHHhhhhC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014738 81 PFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 157 (419)
Q Consensus 81 ~~~~i~~el~~v~~~l~~~v~~~---~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~ 157 (419)
....+.++++.|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.
T Consensus 3 ~~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~----------------- 63 (299)
T 1rqj_A 3 FPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLG--GKRLRPFLVYATGHMFGVST----------------- 63 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTCCH-----------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------
Confidence 34567788999999999988764 678999999999988 99999999999999998641
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC--------ChHHHH
Q 014738 158 TRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--------NTEVVT 227 (419)
Q Consensus 158 ~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~--------~~~v~~ 227 (419)
+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++.. ..++++
T Consensus 64 ~~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~ 143 (299)
T 1rqj_A 64 NTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMIS 143 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHH
Confidence 26788999999999999999999 99999999999999999999999999999999999999851 235788
Q ss_pred HHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHhhh
Q 014738 228 LLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL-AGQTAEVAILAFDYGKNLGLAYQLI 304 (419)
Q Consensus 228 ~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~l-ag~~~~~~~~l~~~G~~lG~AfQI~ 304 (419)
.+++++ ..++.||.+|+.+..+ ..++++|++++.+|||+||++||++|+++ +|++++..+.+++||.++|+||||+
T Consensus 144 ~l~~~~g~~~~~~GQ~~dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~ 222 (299)
T 1rqj_A 144 ELASASGIAGMCGGQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQ 222 (299)
T ss_dssp HHHHHHSTTTHHHHHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHhHHHHHhccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888886 7999999999998766 68999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014738 305 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 384 (419)
Q Consensus 305 DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~ 384 (419)
||++|++++++.+|||.|+|+++||.|+|+++++ ++++..+++|.++
T Consensus 223 DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~ 269 (299)
T 1rqj_A 223 DDILDVVGDTATLGKRQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLIDD 269 (299)
T ss_dssp HHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCH---------------------------------HHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999964 4678999999999
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 385 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 385 A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
|.+.|+.||.+.. .++.|.+|++++++|++
T Consensus 270 A~~~L~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 270 ARQSLKQLAEQSL-----DTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHHHHHTTTC-----CCHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCCCcH-----HHHHHHHHHHHHHhccC
Confidence 9999999987331 57899999999999975
No 22
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=3.3e-63 Score=488.09 Aligned_cols=273 Identities=27% Similarity=0.347 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHhhhh--CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHH
Q 014738 88 ELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 165 (419)
Q Consensus 88 el~~v~~~l~~~v~~--~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 165 (419)
..+.|++.|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++. +.+..+|+
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~ 69 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTEY-----------------ELGMKSAI 69 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTSCG-----------------GGGHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHH
Confidence 456788888888865 5678999999999988 99999999999999998642 14578999
Q ss_pred HHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcC------CChHHHHHHHHHH--HH
Q 014738 166 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL------KNTEVVTLLATVV--EH 235 (419)
Q Consensus 166 avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~------~~~~v~~~ls~~~--~~ 235 (419)
++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++. ...++++.+++++ ..
T Consensus 70 avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~ 149 (301)
T 1rtr_A 70 ALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVG 149 (301)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhH
Confidence 999999999999999 9999999999999999999999999999999999999987 2356888999988 88
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCcc
Q 014738 236 LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 315 (419)
Q Consensus 236 l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~ 315 (419)
+++||.+|+.+..+ ..++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++
T Consensus 150 ~~~GQ~~Dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~ 228 (301)
T 1rtr_A 150 MVGGQMLDMQSEGQ-PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEA 228 (301)
T ss_dssp HHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 99999999998766 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 014738 316 SLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 395 (419)
Q Consensus 316 ~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~ 395 (419)
.+||+.|+|+++||+|+|++++ ++++++.+++|.++|.+.|+.||++
T Consensus 229 ~~GK~~g~Dl~~gK~T~p~l~a---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~~ 275 (301)
T 1rtr_A 229 KLGKKVGSDLENNKSTYVSLLG---------------------------------KDGAEDKLTYHRDAAVDELTQIDEQ 275 (301)
T ss_dssp C-------------CCHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HhCCCcchHHHcCCCcHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999996 4578899999999999999999987
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 014738 396 NDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 396 ~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
+ .++.|.+|++++++|++
T Consensus 276 ~------~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 276 F------NTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp S------CCHHHHHHHHHHHCC--
T ss_pred h------HHHHHHHHHHHHHHhhc
Confidence 7 78899999999999974
No 23
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1e-62 Score=484.60 Aligned_cols=279 Identities=28% Similarity=0.363 Sum_probs=241.1
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014738 80 DPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 156 (419)
Q Consensus 80 d~~~~i~~el~~v~~~l~~~v~~~---~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~ 156 (419)
+....+......|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 2 ~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~--------------- 64 (304)
T 3lsn_A 2 SLTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNG--GKRVRPLLAYAACEALGGKPE--------------- 64 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCGG---------------
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH---------------
Confidence 344567788889999999998765 578999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC----Ch----HHH
Q 014738 157 RTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK----NT----EVV 226 (419)
Q Consensus 157 ~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~----~~----~v~ 226 (419)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||..+++.. ++ +++
T Consensus 65 --~~~~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~ 142 (304)
T 3lsn_A 65 --QANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMV 142 (304)
T ss_dssp --GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHH
Confidence 5688999999999999999999 99999999999999999999999999999999999999874 22 578
Q ss_pred HHHHHHHH--HHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhh
Q 014738 227 TLLATVVE--HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQL 303 (419)
Q Consensus 227 ~~ls~~~~--~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~-~~~~~~~l~~~G~~lG~AfQI 303 (419)
+.+++++. .++.||.+|+.+..+ ..++++|++|+.+|||+||++||++|++++|. +++..+.+++||.++|+||||
T Consensus 143 ~~l~~a~~~~~~~~GQ~lDl~~~~~-~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI 221 (304)
T 3lsn_A 143 TTLAQAAGPAGMVGGQAIDLGSVGL-KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQV 221 (304)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHchhhHhHhHHHHHHccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888874 599999999998765 48999999999999999999999999999999 999999999999999999999
Q ss_pred hhhhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 014738 304 IDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHAN 383 (419)
Q Consensus 304 ~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~ 383 (419)
+||++|++++++.+||+.|+|+++||+|||+++ |+++|++.++++.+
T Consensus 222 ~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~a~~~~~ 268 (304)
T 3lsn_A 222 QDDILDVESDTATLGKRQGADIARDKPTYPALL---------------------------------GLAAAKEYALELRD 268 (304)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHH---------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHhccCChHHhCCCcccHHhcCCccHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 46889999999999
Q ss_pred HHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 384 LAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 384 ~A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
+|.+.|+.||+. ++.|.+|++++++|++
T Consensus 269 ~A~~~L~~l~~~--------~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 269 QALHALRPFDAA--------AEPLRELARYIVERRS 296 (304)
T ss_dssp HHHHHTTTSCGG--------GHHHHHHHHHHHC---
T ss_pred HHHHHHHhCchh--------HHHHHHHHHHHHHhcc
Confidence 999999999853 5899999999999974
No 24
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=7.5e-63 Score=491.23 Aligned_cols=278 Identities=25% Similarity=0.308 Sum_probs=236.7
Q ss_pred chhhHHHHHHHHHHHHHHhhhh--------CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhH
Q 014738 81 PFSLVADELSILAKRLRSMVVA--------EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDAL 152 (419)
Q Consensus 81 ~~~~i~~el~~v~~~l~~~v~~--------~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~ 152 (419)
....+.++++.|++.|.+.+.. .++.+.++++|++..| |||+||.|++++++++|++.
T Consensus 39 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~------------ 104 (335)
T 2h8o_A 39 FETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNG--GKRLRPFLVIESVALLGGDA------------ 104 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTS--CSCHHHHHHHHHHHHTTCCH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH------------
Confidence 3456778889999999998866 4678999999999988 99999999999999998641
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcC--C-----Ch
Q 014738 153 ATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL--K-----NT 223 (419)
Q Consensus 153 ~~~~~~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~--~-----~~ 223 (419)
+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++. . ..
T Consensus 105 -----~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~ 179 (335)
T 2h8o_A 105 -----EAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKA 179 (335)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Confidence 25688999999999999999999 9999999999999999999999999999999999999987 1 24
Q ss_pred HHHHHHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 014738 224 EVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAY 301 (419)
Q Consensus 224 ~v~~~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~Af 301 (419)
++++.+++++ ..+++||.+|+.+..+ ..++++|++++++|||+||+++|++|++++|++++..+.+++||.++|+||
T Consensus 180 ~~~~~ls~a~g~~~~~~GQ~lDl~~~~~-~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAF 258 (335)
T 2h8o_A 180 ALVISLARAAGIGGMAGGQALDLAAEKK-APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSF 258 (335)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 6888999998 8899999999988765 689999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHH
Q 014738 302 QLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKH 381 (419)
Q Consensus 302 QI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~ 381 (419)
||+||++|++++++.+||+.|+|+++||.|+|++++ ++++++.+++|
T Consensus 259 QI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------le~a~~~a~~~ 305 (335)
T 2h8o_A 259 QLADDLLDLTADAATMGKATGKDAARGKGTLVALRG---------------------------------EAWAREKLQEQ 305 (335)
T ss_dssp HHHHHHHHHC-----------------CCCHHHHHC---------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHH---------------------------------HHHHHHHHHHH
Confidence 999999999999999999999999999999999994 46899999999
Q ss_pred HHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 382 ANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 382 ~~~A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
.++|.+.|+.||+ .++.|.+|++++++|++
T Consensus 306 ~~~A~~~L~~l~~--------~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 306 VAEASELLAPYGE--------KAAILIAAARFIAERKS 335 (335)
T ss_dssp HHHHHHHTGGGGG--------GGHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhCch--------hHHHHHHHHHHHHhccC
Confidence 9999999999984 35789999999999974
No 25
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=2.7e-62 Score=480.85 Aligned_cols=278 Identities=30% Similarity=0.391 Sum_probs=237.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhh--CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014738 82 FSLVADELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 159 (419)
Q Consensus 82 ~~~i~~el~~v~~~l~~~v~~--~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
..+-+..+..|++.|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++.. +.
T Consensus 11 ~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------~~ 72 (302)
T 3p8l_A 11 TNFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQKEME----------------TQ 72 (302)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC----------------HH
T ss_pred hhhhHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCcc----------------HH
Confidence 345567788899999998875 3678999999999988 999999999999999987532 25
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC-----hHHHHHHHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATV 232 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~-----~~v~~~ls~~ 232 (419)
+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++... .++++.++++
T Consensus 73 ~~~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a 152 (302)
T 3p8l_A 73 DYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKA 152 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 788999999999999999999 999999999999999999999999999999999999998542 2577888888
Q ss_pred H--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 014738 233 V--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 310 (419)
Q Consensus 233 ~--~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~ 310 (419)
+ ..++.||.+|+.+... ..++++|++|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+
T Consensus 153 ~g~~~~~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~ 231 (302)
T 3p8l_A 153 AGNQGMVSGQMGDIEGEKV-SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDA 231 (302)
T ss_dssp HSTTTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHccCC-CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7 7899999999998765 689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014738 311 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 390 (419)
Q Consensus 311 ~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~ 390 (419)
+++++.+|||.|+|+++||.|||+++ +++++++.++++.++|.++|+
T Consensus 232 ~~d~~~~GK~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~~~~~~~~A~~~L~ 278 (302)
T 3p8l_A 232 TSTEADLGKKVGRDEALNKSTYPALL---------------------------------GIAGAKDALTHQLAEGSAVLE 278 (302)
T ss_dssp TC-----------------CCHHHHH---------------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHhCCChhhHHhcCCCcHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 457888999999999999999
Q ss_pred cCCC---CCCcchHHHHHHHHHHHHHHHhc
Q 014738 391 SLPE---NNDEDVTKSRRALLDLTHRVITR 417 (419)
Q Consensus 391 ~lp~---~~~~~~~~~r~~L~~L~~~v~~R 417 (419)
.||+ ++ .++.|.+|++++++|
T Consensus 279 ~~~~~~~~~------~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 279 KIKANVPNF------SEEHLANLLTQLQLR 302 (302)
T ss_dssp HHHHHCSSC------CHHHHHHHHHHTSCC
T ss_pred hcccccCCh------hHHHHHHHHHHHhhC
Confidence 9986 66 678999999999987
No 26
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.8e-62 Score=482.54 Aligned_cols=278 Identities=25% Similarity=0.351 Sum_probs=226.1
Q ss_pred chhhHHHHHHHHHHHHHHhhhhC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014738 81 PFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 157 (419)
Q Consensus 81 ~~~~i~~el~~v~~~l~~~v~~~---~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~ 157 (419)
-..-+...++.|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 9 ~~~~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~---------------- 70 (302)
T 3p8r_A 9 SLEALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLG--GKRARPYLVYITGQMLGCELS---------------- 70 (302)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSC--CSCHHHHHHHHHHHTTTCCGG----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH----------------
Confidence 34567888999999999998764 578999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC--C------hHHHH
Q 014738 158 TRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVVT 227 (419)
Q Consensus 158 ~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~--~------~~v~~ 227 (419)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||||+++||..+++.. + .++++
T Consensus 71 -~~~~~A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~ 149 (302)
T 3p8r_A 71 -DLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQ 149 (302)
T ss_dssp -GTHHHHHHHHHHHHHHHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 5688999999999999999999 99999999999999999999999999999999999999874 1 25778
Q ss_pred HHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhh
Q 014738 228 LLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLI 304 (419)
Q Consensus 228 ~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~ 304 (419)
.+++++ ..++.||.+|+.+.. ...++++|++|+.+|||+||++||++|++++| ++++..+.+++||.++|+||||+
T Consensus 150 ~l~~a~g~~~~~~GQ~lDl~~~~-~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~ 228 (302)
T 3p8r_A 150 ALAEASGAQGMCLGQALDLAAEN-RLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQ 228 (302)
T ss_dssp HHHHHHSTTTHHHHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHccC-CCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888886 689999999999875 46899999999999999999999999999999 88888899999999999999999
Q ss_pred hhhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014738 305 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 384 (419)
Q Consensus 305 DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~ 384 (419)
||++|++++++.+|||.|+|+++||+|||+++ |+++|+..+++|.++
T Consensus 229 DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~a~~~~~~ 275 (302)
T 3p8r_A 229 DDILDIISDTETLGKPQGSDQELNKSTYPALL---------------------------------GLEGAQQKAHTLLQE 275 (302)
T ss_dssp HHHHHHTTC---------------CCCHHHHH---------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHhCCCcchHHhcCCchHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 457899999999999
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 385 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 385 A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
|.+.|+.||++. +.|.+|++++++|++
T Consensus 276 A~~~L~~l~~~~--------~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 276 ALLALEAIPYNT--------EHLEEFARYVVERKN 302 (302)
T ss_dssp HHHHHTTCSSCT--------HHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 999999999764 789999999999975
No 27
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=6.5e-62 Score=492.08 Aligned_cols=295 Identities=18% Similarity=0.191 Sum_probs=261.1
Q ss_pred hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014738 105 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 184 (419)
Q Consensus 105 p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 184 (419)
+.+.++++|.+ .| |||+||++++++++++|++.. .+.+..+.+..+|+++||||+||||||||||+|
T Consensus 64 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~----------~~~~~~~~a~~~A~avEliH~asLIHDDImD~s 130 (374)
T 2qis_A 64 ARLKEVLEYNA-IG--GKYNRGLTVVVAFRELVEPRK----------QDADSLQRAWTVGWCVELLQAFFLVADDIMDSS 130 (374)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHSCGGG----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhc-CC--CcchHHHHHHHHHHHhCCCCc----------cchHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Confidence 46889999877 57 999999999999999986311 001223457889999999999999999999999
Q ss_pred CCCCCCCcchhccCHH-HHHHHHHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHHHHHHhhcccCCC-----CCC
Q 014738 185 DTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 253 (419)
Q Consensus 185 ~~RRG~pt~h~~~G~~-~AVl~GD~Lla~A~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-----~~s 253 (419)
++|||+||+|.+||++ +||++||+|++.||..++.. .+.++++.+++++..++.||.+|+.+.... ..+
T Consensus 131 ~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 210 (374)
T 2qis_A 131 LTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFT 210 (374)
T ss_dssp CEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCC
T ss_pred CCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccCC
Confidence 9999999999999999 99999999999999988864 346899999999999999999999886541 379
Q ss_pred HHHHHHHHhhhhhch-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCccc
Q 014738 254 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 331 (419)
Q Consensus 254 ~~~yl~~i~~KTasL-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~T 331 (419)
+++|++|+.+|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|| .|+||++||+|
T Consensus 211 ~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T 289 (374)
T 2qis_A 211 EKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCS 289 (374)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCC
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCcc
Confidence 999999999999999 9999999999999 99999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhhC-chHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 014738 332 APILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 408 (419)
Q Consensus 332 lPll~Al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~ 408 (419)
||++++++.. +..++.+...+. ++++++++++++.++|+.++++..+++|.++|.+.|+.||+++ .|+.|.
T Consensus 290 ~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~------~k~~L~ 363 (374)
T 2qis_A 290 WLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL------PPAVFL 363 (374)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTS------CHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHH
Confidence 9999999875 445556655543 3678999999999999999999999999999999999999998 899999
Q ss_pred HHHHHHHhccC
Q 014738 409 DLTHRVITRNK 419 (419)
Q Consensus 409 ~L~~~v~~R~~ 419 (419)
.|++++++|+|
T Consensus 364 ~l~~~i~~R~k 374 (374)
T 2qis_A 364 GLARKIYKRRK 374 (374)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHcCcC
Confidence 99999999986
No 28
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=1.7e-61 Score=487.85 Aligned_cols=295 Identities=20% Similarity=0.199 Sum_probs=264.0
Q ss_pred hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014738 105 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 184 (419)
Q Consensus 105 p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 184 (419)
+.+.++++|.+ .| |||+||++++++++++|++.+. +.+..+.+..+|+++||||+||||||||||+|
T Consensus 57 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~~~~~A~aiEliH~asLiHDDImD~s 123 (367)
T 1uby_A 57 ARLKEVLQYNA-PG--GKCNRGLTVVAAYRELSGPGQK----------DAESLRCALAVGWCIELFQAASLVADDIMDQS 123 (367)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHCCGGGC----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhc-CC--CcchhHHHHHHHHHHhCCCccC----------ChhhHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 46889999988 48 9999999999999999763100 01222357899999999999999999999999
Q ss_pred CCCCCCCcchhccCHH-HHHHHHHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHHHHHHhhcccCCC-----CCC
Q 014738 185 DTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 253 (419)
Q Consensus 185 ~~RRG~pt~h~~~G~~-~AVl~GD~Lla~A~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-----~~s 253 (419)
++|||+||+|.+||++ ++|+.||++++.||..++.. .+.++++.+++++..++.||.+|+.+.... ..+
T Consensus 124 ~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 203 (367)
T 1uby_A 124 LTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203 (367)
T ss_dssp CEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCC
T ss_pred CCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC
Confidence 9999999999999999 99999999999999998874 346899999999999999999999886532 579
Q ss_pred HHHHHHHHhhhhhch-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCccc
Q 014738 254 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 331 (419)
Q Consensus 254 ~~~yl~~i~~KTasL-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~T 331 (419)
+++|++|+.+|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++|+++.+|| .|+||++||+|
T Consensus 204 ~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T 282 (367)
T 1uby_A 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCS 282 (367)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCC
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCch
Confidence 999999999999999 9999999999999 89999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhhC-chHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 014738 332 APILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 408 (419)
Q Consensus 332 lPll~Al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~ 408 (419)
||++++++.. ++.++.+.+.+. ++++++++++++.++|+.++++..+++|.++|.+.|+.+|+++ .|+.|.
T Consensus 283 ~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~ 356 (367)
T 1uby_A 283 WLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------PKEIFL 356 (367)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSS------CTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHH
Confidence 9999999874 555666655543 3678899999999999888899999999999999999999888 899999
Q ss_pred HHHHHHHhccC
Q 014738 409 DLTHRVITRNK 419 (419)
Q Consensus 409 ~L~~~v~~R~~ 419 (419)
.|++++++|+|
T Consensus 357 ~l~~~i~~R~~ 367 (367)
T 1uby_A 357 GLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHHHHhCcC
Confidence 99999999986
No 29
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=4.7e-62 Score=478.34 Aligned_cols=276 Identities=26% Similarity=0.322 Sum_probs=227.9
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 80 DPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 80 d~~~~i~~el~~v~~~l~~~v~~~-~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
+....+......|++.|.+.+... ++.+.++++|. ..| |||+||.|++++++++|++. +
T Consensus 2 ~~~~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~g--GKrlRp~L~l~~~~~~g~~~-----------------~ 61 (297)
T 3m0g_A 2 SLSERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQG--GKRLRAFLAIESAAIHGISM-----------------A 61 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSC--SCCHHHHHHHHHHHHTTCCH-----------------H
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCC--CCcHHHHHHHHHHHHhCCCH-----------------H
Confidence 344567778888999999988765 56899999999 878 99999999999999998642 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC--C----hHHHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N----TEVVTLLA 230 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~--~----~~v~~~ls 230 (419)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||..+++.. . .++++.++
T Consensus 62 ~~~~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~ 141 (297)
T 3m0g_A 62 QAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALA 141 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 6789999999999999999999 99999999999999999999999999999999999998764 2 36888999
Q ss_pred HHH--HHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q 014738 231 TVV--EHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 307 (419)
Q Consensus 231 ~~~--~~l~~Gq~~dl~~~~-~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~ 307 (419)
+++ ..++.||.+|+.+.. ....++++|++|+.+|||+||++||++|++++|.+++ .+++||.+||+||||+||+
T Consensus 142 ~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 142 QASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDI 218 (297)
T ss_dssp HHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTC
T ss_pred HHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHH
Confidence 998 889999999998872 3368999999999999999999999999999999876 8999999999999999999
Q ss_pred hccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 014738 308 LDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAA 387 (419)
Q Consensus 308 lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~ 387 (419)
+|++++++.+|||.|+|+++||+|||++++ ++++++.++++.++|.+
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~ 265 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKATFVSLLG---------------------------------LAGAKSRAADLVAEAEA 265 (297)
T ss_dssp C---------------------CCHHHHHC---------------------------------SSHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999994 46788999999999999
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 388 AIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 388 ~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
+|+.||++. +.|.+|++++++|++
T Consensus 266 ~L~~~~~~~--------~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 266 ALAPYGEAA--------STLRACARYVIERDK 289 (297)
T ss_dssp HTGGGGGGG--------HHHHHHHHHHTC---
T ss_pred HHHhCCCCH--------HHHHHHHHHHHHhcc
Confidence 999998764 789999999999974
No 30
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=9.4e-62 Score=492.91 Aligned_cols=326 Identities=17% Similarity=0.158 Sum_probs=269.4
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhC-------chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhH
Q 014738 80 DPFSLVADELSILAKRLRSMVVAE-------VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDAL 152 (419)
Q Consensus 80 d~~~~i~~el~~v~~~l~~~v~~~-------~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~ 152 (419)
+....+.+....+++.|.+.+.+. .+.+.++++|.+ .| |||+||++++++++++|+..+. .++...+
T Consensus 24 ~~~~~f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~-~G--GKr~Rp~l~l~~~~~l~~~~~~-~~~~~~~-- 97 (390)
T 3dyh_A 24 MPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC-LG--GKYNRGLTVIDVAESLLSLSPN-NNGEEDD-- 97 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-SS--SCCHHHHHHHHHHHHTSCC----------C--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhc-CC--ccchhHHHHHHHHHHhCCcccc-ccccccc--
Confidence 334455555556666665554431 135889999998 78 9999999999999998751000 0000000
Q ss_pred hHHhHHHHHHHHH----HHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHH--HHHHHcC-C-C--
Q 014738 153 ATELRTRQQCIAE----ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--CVALASL-K-N-- 222 (419)
Q Consensus 153 ~~~~~~~~~~lA~----avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A--~~~la~~-~-~-- 222 (419)
....+...++|+ +|||||+||||||||||+|++|||+||+|+.||+++||++||+|+..+ +.+++.. . .
T Consensus 98 -~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~ 176 (390)
T 3dyh_A 98 -GARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPF 176 (390)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTT
T ss_pred -cCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchh
Confidence 001234555565 799999999999999999999999999999999999999999999765 5677653 2 2
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhhccc----------CC------CCCCHHHHHHHHhhhhhch-HHHHHHHHHHHcCCCH
Q 014738 223 -TEVVTLLATVVEHLVTGETMQMTTS----------SD------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTA 284 (419)
Q Consensus 223 -~~v~~~ls~~~~~l~~Gq~~dl~~~----------~~------~~~s~~~yl~~i~~KTasL-~~~a~~~ga~lag~~~ 284 (419)
.++++.+++++..++.||.+|+.+. .. ...++++|++|+++|||+| |++||++|++++|+++
T Consensus 177 ~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~ 256 (390)
T 3dyh_A 177 LQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALP 256 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCh
Confidence 3789999999999999999999872 11 2579999999999999999 9999999999999988
Q ss_pred HH-HHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHHHhhh-CchHHHHHHcccC--ChhHHHH
Q 014738 285 EV-AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGFE--DSSNVDI 360 (419)
Q Consensus 285 ~~-~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~-~~~~~~~l~~~~~--~~~~~~~ 360 (419)
+. .+.++.||.+||+||||+||++|++||++.+|| .|+||++||+|||+++|++. .++.++.+.+.+. +++++++
T Consensus 257 ~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~ 335 (390)
T 3dyh_A 257 TVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVAT 335 (390)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHH
Confidence 74 789999999999999999999999999999999 99999999999999999998 4566666665553 5778999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH--HHHHHHHHHHHHhccC
Q 014738 361 ALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS--RRALLDLTHRVITRNK 419 (419)
Q Consensus 361 i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~--r~~L~~L~~~v~~R~~ 419 (419)
++++++++|++++++..++++.++|.+.|+.||+++ . ++.|..|++++++|+|
T Consensus 336 v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~------~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 336 VRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCS------PGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999988 5 8999999999999987
No 31
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1e-61 Score=477.49 Aligned_cols=280 Identities=24% Similarity=0.321 Sum_probs=241.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhhC--chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 81 PFSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 81 ~~~~i~~el~~v~~~l~~~v~~~--~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
....+++.+..|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 8 ~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------- 68 (309)
T 3pde_A 8 LIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFV----------------- 68 (309)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------
Confidence 34567788888999999888764 678999999999988 999999999999999987542
Q ss_pred HH--HHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC-----hHHHHHH
Q 014738 159 RQ--QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLL 229 (419)
Q Consensus 159 ~~--~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~-----~~v~~~l 229 (419)
.. ..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||..+++... .++++.+
T Consensus 69 ~~~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l 148 (309)
T 3pde_A 69 PERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQAL 148 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45 78999999999999999999 999999999999999999999999999999999999998653 2578889
Q ss_pred HHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q 014738 230 ATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 307 (419)
Q Consensus 230 s~~~--~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~ 307 (419)
++++ ..++.||.+|+.+... ..++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||+
T Consensus 149 ~~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDi 227 (309)
T 3pde_A 149 ATAAGPSGMVAGQAKDIQSEHV-NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDI 227 (309)
T ss_dssp HHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHhHHHHhHHHHHHccCC-CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 7899999999998755 689999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 014738 308 LDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAA 387 (419)
Q Consensus 308 lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~ 387 (419)
+|++++++.+|||+|+|+++||.|||+++++ +.+...++++.++|.+
T Consensus 228 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~al---------------------------------~~a~~~~~~~~~~a~~ 274 (309)
T 3pde_A 228 LDVVSSPAEMGKATQKDADEAKNTYPGKLGL---------------------------------IGANQALIDTIHSGQA 274 (309)
T ss_dssp HHHHCC-----------CTTTSSSHHHHHCH---------------------------------HHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHHHH---------------------------------HHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999954 6677888999999999
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 388 AIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 388 ~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
.|+.+|.+-. .+. |.+|++++++|++
T Consensus 275 ~l~~~~~~~~-----~~~-L~~l~~~~~~r~~ 300 (309)
T 3pde_A 275 ALQGLPTSTQ-----RDD-LAAFFSYFDTERV 300 (309)
T ss_dssp HHHTSCCCHH-----HHH-HHGGGGGSCTTTT
T ss_pred HHHHhhhccC-----HHH-HHHHHHHHHHhhc
Confidence 9999876531 223 9999999999964
No 32
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.4e-61 Score=478.04 Aligned_cols=276 Identities=26% Similarity=0.364 Sum_probs=236.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014738 82 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 158 (419)
Q Consensus 82 ~~~i~~el~~v~~~l~~~v~~~---~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 158 (419)
...+.+....|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++. +
T Consensus 10 ~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~ 70 (313)
T 3lom_A 10 KQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDVDQ-----------------G 70 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCS--SCCHHHHHHHHHHHHTTCCH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------H
Confidence 3456667778888998888753 678999999999988 99999999999999998642 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC-C-------hHHHHH
Q 014738 159 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-N-------TEVVTL 228 (419)
Q Consensus 159 ~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~-~-------~~v~~~ 228 (419)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||..+++.. + .++++.
T Consensus 71 ~~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~ 150 (313)
T 3lom_A 71 VLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQV 150 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 6789999999999999999999 99999999999999999999999999999999999998752 1 247778
Q ss_pred HHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhhh
Q 014738 229 LATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLI 304 (419)
Q Consensus 229 ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag--~~~~~~~~l~~~G~~lG~AfQI~ 304 (419)
+++++ ..++.||.+|+.+..+...++++|++|+.+|||+||+++|++ |+++| ++++..+.+++||.++|+||||+
T Consensus 151 la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~ 229 (313)
T 3lom_A 151 LVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQ 229 (313)
T ss_dssp HHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88876 689999999999987767899999999999999999999999 99999 89999999999999999999999
Q ss_pred hhhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014738 305 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 384 (419)
Q Consensus 305 DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~ 384 (419)
||++|++++++.+|||.|+|+++||.|||+++ |+++|++.++++.++
T Consensus 230 DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~---------------------------------~l~~a~~~a~~~~~~ 276 (313)
T 3lom_A 230 DDYLDLYAPTQILGKGRSSDQANQKTTFATLF---------------------------------NKQQLEEEIAVHYQI 276 (313)
T ss_dssp HHHHHHHCC---------------CCCHHHHS---------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHhhCCCCcchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 467889999999999
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 014738 385 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 418 (419)
Q Consensus 385 A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~ 418 (419)
|.++|+.||++. +.|.+|++++++|+
T Consensus 277 A~~~L~~l~~~~--------~~L~~la~~~~~R~ 302 (313)
T 3lom_A 277 AMDSLRLFGSKA--------AALIELTKQLQNRS 302 (313)
T ss_dssp HHHTTTTTGGGG--------HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccH--------HHHHHHHHHHHhcc
Confidence 999999998643 78999999999996
No 33
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.7e-61 Score=489.73 Aligned_cols=293 Identities=18% Similarity=0.193 Sum_probs=243.1
Q ss_pred hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014738 105 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 184 (419)
Q Consensus 105 p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 184 (419)
+.+.++..|.. .| |||+||+|++++++++|++.. +.+..+.+..+|+++||||+||||||||||+|
T Consensus 66 ~~~~~~~~Y~~-~G--GKrlRp~Lvl~~~~~~g~~~~-----------~~~~~~~a~~lA~aiEliH~asLIHDDImD~s 131 (395)
T 2ihi_A 66 KYYKLLFDYNC-LG--GKNNRGILVILIYEYVKNRDI-----------NSSEWEKAACLAWCIEILQAAFLVADDIMDKG 131 (395)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHC---C-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhc-cC--cccHHHHHHHHHHHHhCCCCC-----------ChhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 46778899988 68 999999999999999986421 11234578899999999999999999999999
Q ss_pred CCCCCCCcchhccCHHH--HHHHHHHHHHHHHHHHHcC-C----ChHHHHHHHHHHHHHHHHHHHhhc-c----------
Q 014738 185 DTRRGIGSLNFVMGNKL--AVLAGDFLLSRACVALASL-K----NTEVVTLLATVVEHLVTGETMQMT-T---------- 246 (419)
Q Consensus 185 ~~RRG~pt~h~~~G~~~--AVl~GD~Lla~A~~~la~~-~----~~~v~~~ls~~~~~l~~Gq~~dl~-~---------- 246 (419)
++|||+||+|++||+.. ||++||+|++.|+.+++.. . ..++++.+++++..++.||.+|+. |
T Consensus 132 ~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~ 211 (395)
T 2ihi_A 132 EMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHRE 211 (395)
T ss_dssp SEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSC
T ss_pred CCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccccc
Confidence 99999999999999998 9999999999999998763 2 268999999999999999999992 1
Q ss_pred -------cC-CC-----CCCHHHHHHHHhhhhhch-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHhhhhhhhcc
Q 014738 247 -------SS-DQ-----RCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDF 310 (419)
Q Consensus 247 -------~~-~~-----~~s~~~yl~~i~~KTasL-~~~a~~~ga~lag~~~~~--~~~l~~~G~~lG~AfQI~DD~lD~ 310 (419)
.. .. ..++++|++|+.+|||+| |.+||++|++++|++++. .+.++.||.++|+||||+||++|+
T Consensus 212 ~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~ 291 (395)
T 2ihi_A 212 IDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDI 291 (395)
T ss_dssp CCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 11 578999999999999999 999999999999999887 899999999999999999999999
Q ss_pred ccCccccCCCCccccccCcccHHHHHHhhhC-chHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 014738 311 TGTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAA 387 (419)
Q Consensus 311 ~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~ 387 (419)
+|+++.+|| .|+||++||+|||++++++.. ++.++.+...+. ++++++.+++++.++|+++++++.++++.++|.+
T Consensus 292 ~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~ 370 (395)
T 2ihi_A 292 FGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILS 370 (395)
T ss_dssp CC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999984 555655554443 5678999999999999999999999999999999
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 014738 388 AIDSLPENNDEDVTKSRRALLDLTHRVITRN 418 (419)
Q Consensus 388 ~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~ 418 (419)
.|+.+|+++ .|+.|..|++++.+|.
T Consensus 371 ~L~~lp~~~------~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 371 AINELHHEG------IEYVLKYLLEILFTGV 395 (395)
T ss_dssp HHTTSCCHH------HHHHHHHHHHC-----
T ss_pred HHHhCCCch------HHHHHHHHHHHHhccC
Confidence 999999988 9999999999999984
No 34
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=3.3e-61 Score=471.98 Aligned_cols=272 Identities=26% Similarity=0.392 Sum_probs=236.8
Q ss_pred HHHHHHHHHHhhhhC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHH
Q 014738 89 LSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 167 (419)
Q Consensus 89 l~~v~~~l~~~v~~~-~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~av 167 (419)
...|++.|.+.+... .|.+.++++|.+..| |||+||.|++++++++|++.+ .+..+|+++
T Consensus 11 ~~~i~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~av 71 (295)
T 3ipi_A 11 YRYVEAGIKESITLIEDPGLKKMVEHVCHSG--GKRIRPIILLLVSEICSGSYS-----------------RSLNAALAV 71 (295)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHSCCG-----------------GGHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHH
Confidence 466777777777653 378999999999988 999999999999999987532 567899999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccc
Q 014738 168 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTS 247 (419)
Q Consensus 168 EliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~ 247 (419)
||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..++... +++++.+++++..++.||.+|+.+.
T Consensus 72 EliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~ 150 (295)
T 3ipi_A 72 EMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-EKVIQDFGKAGMDMAEGEVLDLKLE 150 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCcCcCCCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHHHHccchHHHHcc
Confidence 999999999999999999999999999999999999999999999999998764 7899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCcccccc
Q 014738 248 SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 327 (419)
Q Consensus 248 ~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~ 327 (419)
.+. +++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++ || |+.+
T Consensus 151 ~~~-~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~ 223 (295)
T 3ipi_A 151 DES-FGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKF 223 (295)
T ss_dssp ------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C---------
T ss_pred CCC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----Cccc
Confidence 653 7889999999999999999999999999999999999999999999999999999999999863 65 5789
Q ss_pred CcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHH
Q 014738 328 GIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL 407 (419)
Q Consensus 328 gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L 407 (419)
||+|+|++|+++..+ .+++++|++.+++|.++|.++|+.||+++ +++.|
T Consensus 224 gk~Tlp~l~al~~~~-------------------------~~~le~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L 272 (295)
T 3ipi_A 224 TSETLPHIYMKSTSK-------------------------EEALKKSIDCVKLHVAAAKETLETFRECP------ARDKL 272 (295)
T ss_dssp --CCHHHHHTTTSCH-------------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHH
T ss_pred CcccHHHHHHHhcCc-------------------------hhHHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHH
Confidence 999999999986432 24699999999999999999999999988 99999
Q ss_pred HHHHHHHHhcc
Q 014738 408 LDLTHRVITRN 418 (419)
Q Consensus 408 ~~L~~~v~~R~ 418 (419)
.+|+++++.|.
T Consensus 273 ~~l~~~~~~~~ 283 (295)
T 3ipi_A 273 FQITDYITVDM 283 (295)
T ss_dssp HHHHHHTTGGG
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 35
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=6.4e-61 Score=467.56 Aligned_cols=265 Identities=26% Similarity=0.334 Sum_probs=232.8
Q ss_pred HHHHHHHHHHhhhh-CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHH
Q 014738 89 LSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 167 (419)
Q Consensus 89 l~~v~~~l~~~v~~-~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~av 167 (419)
.++|+..|.+.+.. .++.+.++++|.+..| |||+||.+++++++++|++. +.+..+|+++
T Consensus 15 ~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~av 75 (284)
T 2ftz_A 15 XEXVEERIREILRPGWDLLTEEAMLYSATVG--GXRIRPLLVLTLGEDLGVEE-----------------EXLLDVAVAV 75 (284)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCH-----------------HHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCcCH-----------------HHHHHHHHHH
Confidence 45566666666632 3578999999999988 99999999999999998641 2578899999
Q ss_pred HHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhc
Q 014738 168 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMT 245 (419)
Q Consensus 168 EliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~ 245 (419)
||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++..+.++++.+++++..++.||.+|+.
T Consensus 76 EliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~ 155 (284)
T 2ftz_A 76 ELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVE 155 (284)
T ss_dssp HHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999987778999999999999999999998
Q ss_pred ccCCC-CCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccc
Q 014738 246 TSSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 324 (419)
Q Consensus 246 ~~~~~-~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~D 324 (419)
+..+. ..++++|++++++|||+||++||++|++++|.+++ .+++||.++|+||||+||++|++++++.+|||.|+|
T Consensus 156 ~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~D 232 (284)
T 2ftz_A 156 FERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKD 232 (284)
T ss_dssp HHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------
T ss_pred hccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchh
Confidence 87665 78999999999999999999999999999999877 899999999999999999999999999999999999
Q ss_pred cccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHH
Q 014738 325 IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 404 (419)
Q Consensus 325 l~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r 404 (419)
++ |.|+|++++ ++++++.+++|.++|.+.|+.||+ + .+
T Consensus 233 l~--K~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~-~------~~ 270 (284)
T 2ftz_A 233 TE--XVTLVXXVG---------------------------------IQXAREMADXYYEEVLXGIESEGL-F------RT 270 (284)
T ss_dssp ------CHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHHTTC-H------HH
T ss_pred cc--ccchHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCc-h------hH
Confidence 99 999999995 467899999999999999999987 6 78
Q ss_pred HH-HHHHHHHHHhc
Q 014738 405 RA-LLDLTHRVITR 417 (419)
Q Consensus 405 ~~-L~~L~~~v~~R 417 (419)
+. |.+|++++++|
T Consensus 271 ~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 271 LFLLXELXQMVEER 284 (284)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC
Confidence 88 99999999987
No 36
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=3.8e-60 Score=482.88 Aligned_cols=291 Identities=19% Similarity=0.198 Sum_probs=238.2
Q ss_pred hHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 014738 106 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 185 (419)
Q Consensus 106 ~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~ 185 (419)
.+..+.+|.+. | |||+||++++++++++|+... ..+..+.+..+|++|||||+||||||||||+|+
T Consensus 67 ~~~~~~~Y~~~-G--GKRlRP~l~l~~~~~~~~~~~-----------~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~ 132 (395)
T 3mav_A 67 YYKLLFDYNCL-G--GKNNRGILVILIYEYVKNRDI-----------NSSEWEKAACLAWCIEILQAAFLVADDIMDKGE 132 (395)
T ss_dssp HHHHHHHHHHS-S--SCCHHHHHHHHHHHHHHC-CC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhcCCC-C--chhhhHHHHHHHHHHhCCCCC-----------CcccHHHHHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 35556677775 8 999999999999999986432 123345788999999999999999999999999
Q ss_pred CCCCCCcchhccCHHHHHHHHHHHHH--HHHHHHHcC-----CChHHHHHHHHHHHHHHHHHHHhhcccCC---------
Q 014738 186 TRRGIGSLNFVMGNKLAVLAGDFLLS--RACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSD--------- 249 (419)
Q Consensus 186 ~RRG~pt~h~~~G~~~AVl~GD~Lla--~A~~~la~~-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~--------- 249 (419)
+|||+||+|.+||+++||++||+|+. .++.++... ...++++.++++...+++||.+|+.+..+
T Consensus 133 ~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~ 212 (395)
T 3mav_A 133 MRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREI 212 (395)
T ss_dssp EETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCC
T ss_pred CCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHh
Confidence 99999999999999999999999774 456665532 23578999999999999999999865321
Q ss_pred ---------------CCCCHHHHHHHHhhhhhch-HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 014738 250 ---------------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVLDFT 311 (419)
Q Consensus 250 ---------------~~~s~~~yl~~i~~KTasL-~~~a~~~ga~lag~~--~~~~~~l~~~G~~lG~AfQI~DD~lD~~ 311 (419)
...++++|++|+++|||+| |.+||.+|++++|.+ +...+.+++||.+||+||||+||++|++
T Consensus 213 ~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 213 DVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp CSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2468999999999999999 999999999999975 3467899999999999999999999999
Q ss_pred cCccccCCCCccccccCcccHHHHHHhhhC-chHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 014738 312 GTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 388 (419)
Q Consensus 312 g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~ 388 (419)
|+++.+|| +|+||++||+|||+++|++.. +..+..+.+.+. +++.++.+.+++.++|+.++++..++++.++|.+.
T Consensus 293 gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~ 371 (395)
T 3mav_A 293 GDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSA 371 (395)
T ss_dssp ---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999 699999999999999999874 445555544433 56778899999999999999999999999999999
Q ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 014738 389 IDSLPENNDEDVTKSRRALLDLTHRVITR 417 (419)
Q Consensus 389 L~~lp~~~~~~~~~~r~~L~~L~~~v~~R 417 (419)
|+.+|... .+..|..+++++.++
T Consensus 372 l~~l~~~~------l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 372 INELHHEG------IEYVLKYLLEILFTG 394 (395)
T ss_dssp HHTSCCHH------HHHHHHHHHHHC---
T ss_pred HHhCCcHH------HHHHHHHHHHHHhcC
Confidence 99999776 777777787777654
No 37
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=3.5e-61 Score=483.80 Aligned_cols=284 Identities=16% Similarity=0.176 Sum_probs=253.8
Q ss_pred hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014738 105 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 184 (419)
Q Consensus 105 p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 184 (419)
+.+.++..|.. .| |||+||++++++++++|+..++ ..+.+..+|+++||||+||||||||||+|
T Consensus 58 ~~~~~~~~y~~-~G--GKrlRp~l~l~~~~~~g~~~~~-------------~~~~~~~~A~avEllH~asLIHDDImD~s 121 (368)
T 2her_A 58 EYYLNCIDYNV-KK--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSG 121 (368)
T ss_dssp HHHHHHHHHHT-TS--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-CC--CCccchHHHHHHHHHhCCCCcc-------------cHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 56778888887 68 9999999999999999753211 12478899999999999999999999999
Q ss_pred CCCCCCCcchhccCHHHHHHHHHHHH---HHHHHHHHcC-C---ChHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCH-H
Q 014738 185 DTRRGIGSLNFVMGNKLAVLAGDFLL---SRACVALASL-K---NTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM-D 255 (419)
Q Consensus 185 ~~RRG~pt~h~~~G~~~AVl~GD~Ll---a~A~~~la~~-~---~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~-~ 255 (419)
++|||+||+|.+||+.+|||+||||+ ++++..++.. . ..++++.+++++..++.||.+|+.+.... ..+. +
T Consensus 122 ~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~ 201 (368)
T 2her_A 122 KFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISE 201 (368)
T ss_dssp CEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHH
T ss_pred CCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHH
Confidence 99999999999999999999999999 8888877753 2 24789999999999999999999887643 3455 9
Q ss_pred HHHHHHhhhhhch-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccH
Q 014738 256 YYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 332 (419)
Q Consensus 256 ~yl~~i~~KTasL-~~~a~~~ga~lag~~~~~--~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~Tl 332 (419)
+|++|+++|||+| |++||++|++++|++++. .+.++.||.++|+||||+||++|++ .+|| .|+||++||+||
T Consensus 202 ~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~ 276 (368)
T 2her_A 202 RYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLTW 276 (368)
T ss_dssp HHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCcccH
Confidence 9999999999999 999999999999999887 8899999999999999999999999 6899 999999999999
Q ss_pred HHHHHhhh-CchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 014738 333 PILFAMEE-FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 411 (419)
Q Consensus 333 Pll~Al~~-~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~L~ 411 (419)
|+++|++. .++.++.+.+.+..++ +++.+++.++|+++++++.+++|.++|.+.|+.+|.++ .|+.|..|+
T Consensus 277 pvi~al~~a~~~~r~~L~~~~~~~~--~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~~l~ 348 (368)
T 2her_A 277 PLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLI 348 (368)
T ss_dssp HHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCcH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHH
Confidence 99999997 4667777777666554 89999999999999999999999999999999999987 999999999
Q ss_pred HHHHhc
Q 014738 412 HRVITR 417 (419)
Q Consensus 412 ~~v~~R 417 (419)
+++.++
T Consensus 349 ~~i~~~ 354 (368)
T 2her_A 349 HQISEL 354 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=1.1e-58 Score=456.96 Aligned_cols=281 Identities=23% Similarity=0.270 Sum_probs=231.2
Q ss_pred hhHHHHHHHHHHHHHHhhhh---CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014738 83 SLVADELSILAKRLRSMVVA---EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 159 (419)
Q Consensus 83 ~~i~~el~~v~~~l~~~v~~---~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
..+.+--. |++.|.+.+.. .+|.+.++++|.+..| |||+||.|++++++++|++. ...+..+.
T Consensus 10 ~~~~~~~~-ve~~l~~~~~~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~-----------~~~~~~~~ 75 (311)
T 3llw_A 10 FYYNECER-FESFLKNHHLHLESFHPYLEKAFFEMVLNG--GKRFRPKLFLAVLCALVGQK-----------DYSNQQTE 75 (311)
T ss_dssp HHHHHHHH-HHHHHHTCCCCCCSSCSSHHHHHHHHHHSC--CCCHHHHHHHHHHHHHSCHH-----------HHHHSHHH
T ss_pred HHHHHHHH-HHHHHHHHhhhccCCcHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhCCCc-----------ccccchHH
Confidence 34444444 88888888743 4678999999999988 99999999999999998642 01233357
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHc--CCC---hHHHHHHHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS--LKN---TEVVTLLATV 232 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~--~~~---~~v~~~ls~~ 232 (419)
+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||++.||..+++ +.. .++++.++++
T Consensus 76 ~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a 155 (311)
T 3llw_A 76 YFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSAN 155 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 889999999999999999999 999999999999999999999999999999999999987 332 2477888888
Q ss_pred --HHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHhhhhhhhc
Q 014738 233 --VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA-ILAFDYGKNLGLAYQLIDDVLD 309 (419)
Q Consensus 233 --~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~-~~l~~~G~~lG~AfQI~DD~lD 309 (419)
+..++.||.+|+.+.. ...++++|++|+.+|||+||++||++|++++|++++.. +.+++||.++|+||||+||++|
T Consensus 156 ~g~~~m~~GQ~lDl~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD 234 (311)
T 3llw_A 156 GGIKGMILGQALDCYFEN-TPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIID 234 (311)
T ss_dssp HSTTTHHHHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHhcC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999998873 46899999999999999999999999999999998888 9999999999999999999999
Q ss_pred cccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 014738 310 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 389 (419)
Q Consensus 310 ~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L 389 (419)
++++++.+||+.++ ++||.|||++++ ++.++..++++.++|.+.|
T Consensus 235 ~~gd~~~~GK~~g~--~~gK~T~p~l~~---------------------------------l~~a~~~~~~~~~~a~~~l 279 (311)
T 3llw_A 235 VTQDEEESGKTTHL--DSAKNSFVNLLG---------------------------------LERANNYAQTLKTEVLNDL 279 (311)
T ss_dssp HHC---------------CCSCHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred ccCChHHHCccccc--ccCcchHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHh
Confidence 99999999999876 999999999995 4667788999999999999
Q ss_pred ccCCCCCCcchHHH-HHHHHHHHHHHHhcc
Q 014738 390 DSLPENNDEDVTKS-RRALLDLTHRVITRN 418 (419)
Q Consensus 390 ~~lp~~~~~~~~~~-r~~L~~L~~~v~~R~ 418 (419)
+.|+.-.. . .+.|.+|++++++|.
T Consensus 280 ~~~~~~~~-----~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 280 DALKPAYP-----LLQENLNALLNTLFKGE 304 (311)
T ss_dssp TTSTTTCH-----HHHHHHHHHHHHHHC--
T ss_pred hhccccCc-----cHHHHHHHHHHHHHhcc
Confidence 99664220 2 578999999999995
No 39
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=2.3e-57 Score=443.67 Aligned_cols=267 Identities=24% Similarity=0.324 Sum_probs=220.5
Q ss_pred HHHHHHHHHHhhh---hCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHH
Q 014738 89 LSILAKRLRSMVV---AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 165 (419)
Q Consensus 89 l~~v~~~l~~~v~---~~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 165 (419)
.+.+++.|.+.+. +.+|.+.++++|.+..| |||+||.|++++++++|++. .+.+..+|+
T Consensus 6 ~~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~~~~~----------------~~~~~~~A~ 67 (291)
T 3npk_A 6 KELFIHHLEKNLPKVESFHPFFNEALALMLKAG--GKHFRAQLLLSVVQSNKPEL----------------LNQALDVAL 67 (291)
T ss_dssp HHHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCGGG----------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCc----------------HHHHHHHHH
Confidence 3456677766654 34678999999999888 99999999999999997531 136789999
Q ss_pred HHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC-C----hHHHHHHHHH--HHHH
Q 014738 166 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-N----TEVVTLLATV--VEHL 236 (419)
Q Consensus 166 avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~-~----~~v~~~ls~~--~~~l 236 (419)
++||||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||..+++.. + .++++.++++ +..+
T Consensus 68 aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~ 147 (291)
T 3npk_A 68 ALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGM 147 (291)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTH
T ss_pred HHHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999 99999999999999999999999999999999999998754 2 2578889998 8999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccc
Q 014738 237 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 316 (419)
Q Consensus 237 ~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~ 316 (419)
+.||.+|+.+... ..++++|+.|+++|||+||++||++||+++|++++..+.+++||.+||+||||+||++|++++++.
T Consensus 148 ~~GQ~lDl~~~~~-~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~ 226 (291)
T 3npk_A 148 VIGQAIDCFFEDK-RLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQ 226 (291)
T ss_dssp HHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhccCC-CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHH
Confidence 9999999988653 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014738 317 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 396 (419)
Q Consensus 317 ~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~ 396 (419)
+||+.+.| +||.|||+++++ +.+...++++.++|.+.|+.|+..
T Consensus 227 ~GK~~~~d--~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~a~~~l~~~~~~- 270 (291)
T 3npk_A 227 SGKPTNND--IHKNSFVNLLGL---------------------------------EQAIKTKENLLNECEQDLEKLNEK- 270 (291)
T ss_dssp -------------CCHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHHTSCHH-
T ss_pred HCCccchh--cCcchHHHHHHH---------------------------------HHhHHHHHHHHHHHHHHHHHhchh-
Confidence 99999776 999999999954 556678888889999999988643
Q ss_pred CcchHHHHHHHHHHHHHHHh
Q 014738 397 DEDVTKSRRALLDLTHRVIT 416 (419)
Q Consensus 397 ~~~~~~~r~~L~~L~~~v~~ 416 (419)
..+.|.+|+++-++
T Consensus 271 ------~~~~l~~la~~~~~ 284 (291)
T 3npk_A 271 ------LAQMIQNLIIQYLE 284 (291)
T ss_dssp ------HHHHHHHHHHHHC-
T ss_pred ------HHHHHHHHHHHHHh
Confidence 35789999988654
No 40
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=2.3e-57 Score=443.79 Aligned_cols=268 Identities=21% Similarity=0.262 Sum_probs=236.8
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhh-CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 157 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~-~~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~ 157 (419)
+...+.+.+-.+.|++.|.+.+.. .++.+.++++|++. | |||+||.+++++++++|++.
T Consensus 9 ~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-g--GKrlRp~L~l~~~~~~g~~~----------------- 68 (289)
T 2azj_A 9 MSIIEFWLEAKATIDRLIEQFLNSNRDWDLVDISSYILK-D--GKRFRGTLNMFFTVALGGDI----------------- 68 (289)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-C--CCCHHHHHHHHHHHHTTCCG-----------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHhCCCH-----------------
Confidence 334455666677788888888865 46779999999998 9 99999999999999998642
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHH
Q 014738 158 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVAL-ASLKNTEVVTLLATVVEHL 236 (419)
Q Consensus 158 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~l-a~~~~~~v~~~ls~~~~~l 236 (419)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+ ++.+ +++++.+++++..+
T Consensus 69 ~~~~~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~ 147 (289)
T 2azj_A 69 KDSYGGALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDT 147 (289)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHH
Confidence 146789999999999999999999999999999999999999999999999999999999 8775 58999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccc
Q 014738 237 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 316 (419)
Q Consensus 237 ~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~ 316 (419)
++||.+|+.+ +++|++++++|||+||++||++|++++ ++++..+.+++||.++|+||||+||++|++++
T Consensus 148 ~~GQ~~dl~~-------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~--- 216 (289)
T 2azj_A 148 SVGALRDMYD-------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK--- 216 (289)
T ss_dssp HHHHHHTTTT-------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHHhh-------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC---
Confidence 9999999875 567999999999999999999999999 99899999999999999999999999999996
Q ss_pred cCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHhccCCC-
Q 014738 317 LGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKT-RELAVKHANLAAAAIDSLPE- 394 (419)
Q Consensus 317 ~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a-~~~a~~~~~~A~~~L~~lp~- 394 (419)
||+ |+++||.|+|+++ +... . +.+ +..+++|.++|.+.|+.+|+
T Consensus 217 -~K~---dl~~gk~Tlp~l~--~~~g-~---------------------------~~a~~~~a~~~~~~A~~~L~~lp~~ 262 (289)
T 2azj_A 217 -KVE---EIDGSAKQLFKYY--REGK-L---------------------------EEYVRSVYLEYKQKYDELISNIPFQ 262 (289)
T ss_dssp -CTT---TCCTTGGGGHHHH--TTTC-H---------------------------HHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred -CCh---hhhcCcccHHHHH--HcCC-H---------------------------HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 565 8999999999999 2211 0 111 45899999999999999998
Q ss_pred CCCcchHHHHHHHHHHHHHHHhcc
Q 014738 395 NNDEDVTKSRRALLDLTHRVITRN 418 (419)
Q Consensus 395 ~~~~~~~~~r~~L~~L~~~v~~R~ 418 (419)
++ .++.|.+|++++++|.
T Consensus 263 ~~------~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 263 SK------YLSEIRSLPEFLANGL 280 (289)
T ss_dssp GG------GHHHHHTHHHHHHHHH
T ss_pred cH------HHHHHHHHHHHHHhcc
Confidence 66 8999999999999984
No 41
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=5.5e-57 Score=442.36 Aligned_cols=268 Identities=31% Similarity=0.420 Sum_probs=234.6
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhCc-hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014738 79 LDPFSLVADELSILAKRLRSMVVAEV-PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 157 (419)
Q Consensus 79 ~d~~~~i~~el~~v~~~l~~~v~~~~-p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~ 157 (419)
.|+-..+.++++.|++.|.+.+.... +.+.++++|.+..| |||+||.|++++++++|++.
T Consensus 11 ~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~----------------- 71 (293)
T 2j1p_A 11 TDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEE----------------- 71 (293)
T ss_dssp --CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTCCH-----------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------
Confidence 67888899999999999999987654 56999999999988 99999999999999987631
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC-----ChHHHH---
Q 014738 158 TRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-----NTEVVT--- 227 (419)
Q Consensus 158 ~~~~~lA~avEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~-----~~~v~~--- 227 (419)
+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||..+++.. +..+++
T Consensus 72 ~~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ 151 (293)
T 2j1p_A 72 SLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVG 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHH
Confidence 25788999999999999999998 99999999999999999999999999999999999998753 223444
Q ss_pred HHHHHH--HHHHHHHHHhhcccCC--CCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Q 014738 228 LLATVV--EHLVTGETMQMTTSSD--QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQL 303 (419)
Q Consensus 228 ~ls~~~--~~l~~Gq~~dl~~~~~--~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI 303 (419)
.+++++ ..++.||.+|+.+..+ ...++++|+.++++|||+||++||++|++++|++++..+.+++||.++|+||||
T Consensus 152 ~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI 231 (293)
T 2j1p_A 152 ELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQV 231 (293)
T ss_dssp HHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 555554 5799999999988654 356889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 014738 304 IDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHAN 383 (419)
Q Consensus 304 ~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~ 383 (419)
+||++|+++++ |.|+|+++ |+++|++.+++|.+
T Consensus 232 ~DDiLD~~~~~--------------K~T~p~l~---------------------------------gle~a~~~a~~~~~ 264 (293)
T 2j1p_A 232 VDDILDVTKSS--------------KLTYPKLM---------------------------------GLEKSREFAEKLNT 264 (293)
T ss_dssp HHHHHHHHC----------------CCCHHHHH---------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHccCCc--------------cccHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 99999999875 89999998 56899999999999
Q ss_pred HHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014738 384 LAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 419 (419)
Q Consensus 384 ~A~~~L~~lp~~~~~~~~~~r~~L~~L~~~v~~R~~ 419 (419)
+|.+.|+.|| ++ .++.|.+|++++++|++
T Consensus 265 ~A~~~L~~l~-~~------~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 265 EARDQLLGFD-SD------KVAPLLALANYIANRQN 293 (293)
T ss_dssp HHHHHTTTSC-TT------TTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCC-cH------HHHHHHHHHHHHHhhcC
Confidence 9999999998 44 57899999999999975
No 42
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=6.1e-57 Score=455.03 Aligned_cols=283 Identities=16% Similarity=0.172 Sum_probs=234.8
Q ss_pred hHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 014738 106 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 185 (419)
Q Consensus 106 ~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s~ 185 (419)
.+..+.+|.+. | |||+||++++++++++++.... ..+.++.+|++|||||+||||||||||+|+
T Consensus 59 ~~~~~l~Y~~~-G--GKrlRp~l~~~~~~~~~~~~~~-------------~~e~~~~la~aiEliH~asLiHDDimD~s~ 122 (368)
T 2q58_A 59 YYLNCIDYNVK-K--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSGK 122 (368)
T ss_dssp HHHHHHHHHTT-C--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC-C--ccchhHHHHHHHHHHhCCCccC-------------CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 47788999884 8 9999999999999999864321 124678899999999999999999999999
Q ss_pred CCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC-------hHHHHHHHHHHHHHHHHHHHhhcccC--CCCCCHHH
Q 014738 186 TRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-------TEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMDY 256 (419)
Q Consensus 186 ~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~-------~~v~~~ls~~~~~l~~Gq~~dl~~~~--~~~~s~~~ 256 (419)
+|||+||+|.+||++.|||+||||++.|+..+....+ .++++.+++++..++.||.+|+.+.. +.+.+.++
T Consensus 123 ~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~ 202 (368)
T 2q58_A 123 FRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISER 202 (368)
T ss_dssp EETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHH
T ss_pred CCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHH
Confidence 9999999999999999999999999999999887643 36889999999999999999997653 44567899
Q ss_pred HHHHHhhhhhch-HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHH
Q 014738 257 YMQKTYYKTASL-ISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 333 (419)
Q Consensus 257 yl~~i~~KTasL-~~~a~~~ga~lag--~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlP 333 (419)
|++++.+|||+| |++||.+|++++| ++++..+.++.||.++|+||||+||++||++ |||.|+||++||+|||
T Consensus 203 y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p 277 (368)
T 2q58_A 203 YFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWP 277 (368)
T ss_dssp HHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHH
Confidence 999999999999 7999999999998 5667788999999999999999999999985 8999999999999999
Q ss_pred HHHHhhhC-chHHHHHHcccCC-hhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHH----H
Q 014738 334 ILFAMEEF-PQLRTVVEQGFED-SSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRA----L 407 (419)
Q Consensus 334 ll~Al~~~-~~~~~~l~~~~~~-~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~----L 407 (419)
+++|++.. ++.+..+.+.+.. ...+++++ ...+..+.+.+.++++.+++.+.++.+|++. .++. |
T Consensus 278 ~i~al~~~~~~~r~~L~~~~~~~~~~vk~l~---~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~------~k~~l~~ll 348 (368)
T 2q58_A 278 LQKSFEIADEEMKLKISENYGKNSSLVKDCY---NLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLI 348 (368)
T ss_dssp HHSSTTTCCHHHHHHHHHHTTTCHHHHHHHH---HHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhCCCHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHH
Confidence 99999975 4566666655543 33444444 4445566677778888899999999999876 5554 4
Q ss_pred HHHHHHHHhcc
Q 014738 408 LDLTHRVITRN 418 (419)
Q Consensus 408 ~~L~~~v~~R~ 418 (419)
..+++++++|+
T Consensus 349 ~kI~~~~~~rk 359 (368)
T 2q58_A 349 HQISELITNSR 359 (368)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHHhh
Confidence 55666666664
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=1.4e-52 Score=407.41 Aligned_cols=220 Identities=29% Similarity=0.386 Sum_probs=193.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhhC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014738 81 PFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 159 (419)
Q Consensus 81 ~~~~i~~el~~v~~~l~~~v~~~-~p~l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
....+.++++.|++.|++.+.+. +|.+.++++|++..| |||+||.+++++++++|+... ..+.
T Consensus 6 l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~Lvll~~~~~g~~~~--------------~~~~ 69 (285)
T 4fp4_A 6 LPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETP--GKLLRPLLLLTFTYSIDRRSI--------------MDPR 69 (285)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHCGGGG--------------GCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCCC--------------ChHH
Confidence 45789999999999999999887 889999999999988 999999999999999986210 1136
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 239 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~G 239 (419)
+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++.++ ++++.+++++..++.|
T Consensus 70 ~~~~A~aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~G 148 (285)
T 4fp4_A 70 ILEAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQRLSVG 148 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999999999999999999999998764 9999999999999999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCC
Q 014738 240 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 319 (419)
Q Consensus 240 q~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK 319 (419)
|.+|+.+..+. ++++|||+||++||++|++++|++ +..+.+++||.++|+||||+||++|++++++ .||
T Consensus 149 Q~lDl~~~~~~---------~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k 217 (285)
T 4fp4_A 149 QALDLEGERDK---------AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETK 217 (285)
T ss_dssp HHHHHTTCHHH---------HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHH
T ss_pred HHHHHhccccc---------hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccC
Confidence 99999875321 999999999999999999999999 8889999999999999999999999999875 678
Q ss_pred CCccccccC
Q 014738 320 GSLSDIRHG 328 (419)
Q Consensus 320 ~~~~Dl~~g 328 (419)
+.|+||+++
T Consensus 218 ~~g~DI~e~ 226 (285)
T 4fp4_A 218 SIANEIGRY 226 (285)
T ss_dssp HHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 899999998
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=3.2e-48 Score=376.60 Aligned_cols=204 Identities=13% Similarity=0.160 Sum_probs=180.3
Q ss_pred hHHHHHHHHHHHHHHhhhhCchh-HHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHH
Q 014738 84 LVADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 162 (419)
Q Consensus 84 ~i~~el~~v~~~l~~~v~~~~p~-l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (419)
.++.--..|++.|.+.+....|. +.++++|++..| |||+||.|++++++++|++.. .+..
T Consensus 4 ~~~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~ 64 (274)
T 3kra_B 4 YWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAA--PATAASTLCLAACELVGGDRS-----------------QAMA 64 (274)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GGHH
T ss_pred HHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHH
Confidence 34444556788888888877765 999999999888 999999999999999987532 5678
Q ss_pred HHHHHHHHHHHHHhhcCCC-CCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCCh-------HHHHH---HHH
Q 014738 163 IAEITEMIHVASLLHDDVL-DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT-------EVVTL---LAT 231 (419)
Q Consensus 163 lA~avEliH~AsLIHDDIi-D~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~~-------~v~~~---ls~ 231 (419)
+|+++||||+||||||||+ |++++|||+||+|.+||+++|||+||||+++||..+++..++ .+++. +++
T Consensus 65 ~A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~ 144 (274)
T 3kra_B 65 AAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISR 144 (274)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHH
Confidence 9999999999999999998 777789999999999999999999999999999999987653 34444 455
Q ss_pred HH--HHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhh
Q 014738 232 VV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 307 (419)
Q Consensus 232 ~~--~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~ 307 (419)
++ ..++.||.+|+.+..+ ..++++|++|+++|||+||++||++|++++|++++.++.+++||.+||+||||+||.
T Consensus 145 a~G~~~~~~GQ~lDl~~~~~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 145 AGGPEGMISGLHREEEIVDG-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HTSTTTHHHHHHHHTTCCTT-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHhHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54 6789999999998765 689999999999999999999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=1.1e-46 Score=365.87 Aligned_cols=202 Identities=12% Similarity=0.143 Sum_probs=173.1
Q ss_pred hHHHHHHHHHHHHHHhhhhCchh-HHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHH
Q 014738 84 LVADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 162 (419)
Q Consensus 84 ~i~~el~~v~~~l~~~v~~~~p~-l~~~~~y~~~~g~~GKr~Rp~l~ll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (419)
.+..--..|++.|.+.+....|. +.++++|++..| |||+||.|++++++++|++.. .+..
T Consensus 9 ~~~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~ 69 (273)
T 3qkc_B 9 YRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAA--PRTSASALCVAACELVGGDRS-----------------DAMA 69 (273)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCSSTTHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GTHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHH
Confidence 33344455778888888766664 999999999888 999999999999999987532 5688
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC------hHHHHHH---HHHH
Q 014738 163 IAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLL---ATVV 233 (419)
Q Consensus 163 lA~avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~------~~v~~~l---s~~~ 233 (419)
+|+++||||+||||||||+|+|+ |||+||+|.+||+++|||+||||+++||..+++..+ .++++.+ ++++
T Consensus 70 ~A~aiEliH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~ 148 (273)
T 3qkc_B 70 AAAAVHLMHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVM 148 (273)
T ss_dssp HHHHHHHHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHh
Confidence 99999999999999999999998 999999999999999999999999999999987653 2445544 4444
Q ss_pred --HHHHHHHHHhhcccCCCCCCHHHHHH-HHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Q 014738 234 --EHLVTGETMQMTTSSDQRCSMDYYMQ-KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 308 (419)
Q Consensus 234 --~~l~~Gq~~dl~~~~~~~~s~~~yl~-~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~l 308 (419)
..++.||.+|+.+.. ..+. +|++ ++++|||+||++||++||+++|++++.++.+++||.++|+||||+||++
T Consensus 149 g~~~~~~GQ~lDl~~~~--~~~~-eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 149 GSEGIVEGQYHELGLNQ--LNDL-ELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp TTTTHHHHHHHHTTCCS--SCCH-HHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHhcCC--CCCH-HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999998843 3455 5555 6699999999999999999999999999999999999999999999996
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=96.30 E-value=0.29 Score=47.04 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 014738 233 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 312 (419)
Q Consensus 233 ~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g 312 (419)
+..+.+|..+|+.... ..|++++..-+++-.|+...+.+. +++..+++ ...++.++|+|||+.|=+.|+
T Consensus 106 ~~~li~g~~~Dl~~~~--~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv-- 174 (294)
T 4hd1_A 106 FLRLIEANRRDQRKHT--YDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDI-- 174 (294)
T ss_dssp HHHHHHHHHHHHHCSB--CCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTH--
T ss_pred HHHHHHHHHhccccCC--CCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhc--
Confidence 5678899999987642 457888777666555544444433 33434444 345788999999999988887
Q ss_pred CccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 014738 313 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 392 (419)
Q Consensus 313 ~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~l 392 (419)
+.|+..|++-+|.-..-+.+-...++.... .+ +.+..+ +..-...++.|.++|...+..+
T Consensus 175 ---------~eD~~~gR~YlP~~~l~~~gv~~~dl~~~~-~~-~~~~~~---------~~~~~~~A~~~~~~a~~~~~~l 234 (294)
T 4hd1_A 175 ---------DRDLALGRIYVPRADLEQFGATLDDIRARR-AT-DGVRRC---------IALEVDRAQALFDEGRRLESLV 234 (294)
T ss_dssp ---------HHHHHTTCBCSCHHHHHTTTCCHHHHHTTC-CC-HHHHHH---------HHHHHHHHHHHHHHHGGGGGSS
T ss_pred ---------hhhhccCceeCCHHHHHHcCCCHHHHhcCC-CC-HHHHHH---------HHHHHHHHHHHHHHHHHHHHhC
Confidence 356788899888765433322222332221 12 222222 2333466778888888888888
Q ss_pred CCC
Q 014738 393 PEN 395 (419)
Q Consensus 393 p~~ 395 (419)
|..
T Consensus 235 p~~ 237 (294)
T 4hd1_A 235 PPR 237 (294)
T ss_dssp CHH
T ss_pred CHH
Confidence 743
No 47
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=94.94 E-value=0.29 Score=46.96 Aligned_cols=134 Identities=12% Similarity=0.011 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 014738 232 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 311 (419)
Q Consensus 232 ~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~ 311 (419)
.+..+++|..+|+... ...|.+++..-+++--|+...+.+.+- +..+. +.....+.++|.|+|+.|=+.|+
T Consensus 109 ~~~~li~g~~~Dl~~~--~~~t~~dL~~Yc~~vAg~VG~l~~~l~---g~~~~---~~~~~~A~~lG~AlQltNilRDv- 179 (293)
T 3acx_A 109 SFYNLIDTVYKDQHFT--MFETDAELFGYCYGVAGTVGEVLTPIL---SDHET---HQTYDVARRLGESLQLINILRDV- 179 (293)
T ss_dssp HHHHHHHHHHHHTTCC--CCSSHHHHHHHHHHHTHHHHHHHHHHH---CSSCC---HHHHHHHHHHHHHHHHHHHHHCH-
T ss_pred HHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhhHHHHHHHHHHh---CCCCc---HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3567778888887653 235788888777776666666555543 22231 23457899999999999977776
Q ss_pred cCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 014738 312 GTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 391 (419)
Q Consensus 312 g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~ 391 (419)
+.|+..|++-+|.=..-+..-...++.... .+ +.+.. .+.+-...++.|..+|...+..
T Consensus 180 ----------~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~-~~-~~~~~---------~~~~l~~~A~~~~~~a~~~~~~ 238 (293)
T 3acx_A 180 ----------GEDFENERIYFSKQRLKQYEVDIAEVYQNG-VN-NHYID---------LWEYYAAIAEKDFRDVMDQIKV 238 (293)
T ss_dssp ----------HHHHHTTCCCSCHHHHHHHTCCHHHHHHHC-CC-HHHHH---------HHHHHHHHHHHHHHHHHHTGGG
T ss_pred ----------HHHHhCCcEEeCHHHHHHcCCCHHHhcccC-CC-HHHHH---------HHHHHHHHHHHHHHHHHHhHHh
Confidence 457788999998854333322222333221 12 22222 2344457788888999999999
Q ss_pred CCCC
Q 014738 392 LPEN 395 (419)
Q Consensus 392 lp~~ 395 (419)
+|..
T Consensus 239 lp~~ 242 (293)
T 3acx_A 239 FSIE 242 (293)
T ss_dssp SCTT
T ss_pred CCHH
Confidence 8875
No 48
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=94.39 E-value=0.51 Score=46.43 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhh
Q 014738 225 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 304 (419)
Q Consensus 225 v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~ 304 (419)
+.+.+.+.+..+..|-.+++.. ...|.+++..-+++--|+...+.+.+-..-...++. .......+.++|.|||+.
T Consensus 112 ~~~~i~~~~~~m~~gm~~dl~~---~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQlt 187 (343)
T 3vj8_A 112 YQTVIADICRRMGIGMAEFLDK---HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKT 187 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGC---CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHH
Confidence 4456667777888888888752 246888888877777777766666665443322332 334567899999999999
Q ss_pred hhhhccccCccccCCCCccccccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014738 305 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 384 (419)
Q Consensus 305 DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~ 384 (419)
|=+.|+ +.|+..|++-+|.=..-+..-...++. .+..-..+.. .+..-...++.|..+
T Consensus 188 NilRDv-----------~eD~~~gR~YlP~e~l~~~g~~~~dl~-----~~~~~~~~~~------~l~~l~~~A~~~~~~ 245 (343)
T 3vj8_A 188 NIIRDY-----------LEDQQGGREFWPQEVWSRYVKKLGDFA-----KPENIDLAVQ------CLNELITNALHHIPD 245 (343)
T ss_dssp HHHHTH-----------HHHHHTTCCCSCHHHHTTTCSSGGGGG-----SGGGHHHHHH------HHHHHHHHHHTTHHH
T ss_pred HHHHHh-----------HHHHhCCCeeCCHHHHHHcCCCHHHHh-----cccCCHHHHH------HHHHHHHHHHHHHHH
Confidence 988887 457778888888754322211111111 1111122222 234445677777788
Q ss_pred HHHHhccCCCC
Q 014738 385 AAAAIDSLPEN 395 (419)
Q Consensus 385 A~~~L~~lp~~ 395 (419)
|...+..+|+.
T Consensus 246 a~~~~~~L~~~ 256 (343)
T 3vj8_A 246 VITYLSRLRNQ 256 (343)
T ss_dssp HHHHHHTCCCH
T ss_pred HHHHHHhCCcc
Confidence 88888777664
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=81.67 E-value=41 Score=32.88 Aligned_cols=93 Identities=6% Similarity=-0.073 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhhchHHHHH-HHHHHHcCCCHHHHH--HHHHHHH
Q 014738 220 LKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSC-KAIALLAGQTAEVAI--LAFDYGK 295 (419)
Q Consensus 220 ~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~yl~~i~~KTasL~~~a~-~~ga~lag~~~~~~~--~l~~~G~ 295 (419)
...+.....+.+.+..++.+-..+..+.. ...+++++|+++-..-+|..+..++ ..+ .--..++++.+ .+.++-.
T Consensus 173 ~~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~-~g~~l~~~~~~~p~~~~l~~ 251 (382)
T 3kb9_A 173 FLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPS-SGCELPDAVRKHPAYRRAAL 251 (382)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHH-HTCCCCHHHHTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHH-cCCCCCHHHHhChHHHHHHH
Confidence 33567788899999999999988876643 3358999999985555554333222 122 11123444432 4566778
Q ss_pred HHHHHHhhhhhhhccccC
Q 014738 296 NLGLAYQLIDDVLDFTGT 313 (419)
Q Consensus 296 ~lG~AfQI~DD~lD~~g~ 313 (419)
..+...-+.||+..|..+
T Consensus 252 ~~~~i~rL~NDi~S~~kE 269 (382)
T 3kb9_A 252 LSQEFAAWYNDLCSLPKE 269 (382)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999999999999644
No 50
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=79.04 E-value=2.8 Score=35.60 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhcc
Q 014738 202 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTT 246 (419)
Q Consensus 202 AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~ 246 (419)
-||+|||+=++.+.+|+.......+..+++++..+.+.-..-.+-
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~~~ 116 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRATI 116 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 559999999999999999888999999999999998887666543
No 51
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=78.95 E-value=43 Score=33.65 Aligned_cols=96 Identities=9% Similarity=-0.028 Sum_probs=62.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcC--CCHHHHH--H
Q 014738 215 VALASLKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--L 289 (419)
Q Consensus 215 ~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag--~~~~~~~--~ 289 (419)
..+.....+.....+.+.+..++.+-+.+..+.. ...+|+++|+++ +..||.....++ .....| .++++.+ .
T Consensus 246 ~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg~~p~~~l--~e~~~g~~lp~~v~~~p~ 322 (433)
T 3v1v_A 246 GYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNNFRPCPTI--TDTVGGYELPADLHARPD 322 (433)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSSSTTTGGG--HHHHHTCCCCHHHHTSHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhHHHHHHH--HHHHcCCCCCHHHHhCch
Confidence 3444444567778888888888998888877642 335899999996 445654322222 112223 3444433 4
Q ss_pred HHHHHHHHHHHHhhhhhhhccccC
Q 014738 290 AFDYGKNLGLAYQLIDDVLDFTGT 313 (419)
Q Consensus 290 l~~~G~~lG~AfQI~DD~lD~~g~ 313 (419)
+.++-...+...-+.||+..|..+
T Consensus 323 ~~~L~~~~~~i~rL~NDI~Sy~kE 346 (433)
T 3v1v_A 323 MQRVIALAGNATTIVNDLYSYTKE 346 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHH
Confidence 556778888899999999999644
No 52
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=63.23 E-value=1.4e+02 Score=30.85 Aligned_cols=89 Identities=11% Similarity=0.026 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcC--CCHHHHHHH---HHHHHH
Q 014738 223 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILA---FDYGKN 296 (419)
Q Consensus 223 ~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag--~~~~~~~~l---~~~G~~ 296 (419)
..++..+.+++..++.+-..+..|.. ...+|+++|++.-.--+|..+...... ...| .+.+..+.+ .++-+.
T Consensus 365 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~--~~mg~~lt~e~~e~~~~~p~i~~~ 442 (554)
T 3g4d_A 365 QYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSF--VGMGDIVTPETFKWAASDPKIIQA 442 (554)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHH--HTSCTTSCHHHHHHHHTCCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHH--HhcCCCCCHHHHHhccccHHHHHH
Confidence 35788888899999999988888743 346899999997655555432221111 1123 466666554 367788
Q ss_pred HHHHHhhhhhhhccccC
Q 014738 297 LGLAYQLIDDVLDFTGT 313 (419)
Q Consensus 297 lG~AfQI~DD~lD~~g~ 313 (419)
.+...-+.||+..|..+
T Consensus 443 ~~~I~RL~NDI~S~k~E 459 (554)
T 3g4d_A 443 STIICRFMDDVAEHKFK 459 (554)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHhcccchhhhh
Confidence 89999999999998644
No 53
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=60.30 E-value=75 Score=33.01 Aligned_cols=88 Identities=9% Similarity=0.045 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHH
Q 014738 225 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILA---FDYGKNLGL 299 (419)
Q Consensus 225 v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag-~~~~~~~~l---~~~G~~lG~ 299 (419)
++..+.+++..++.+-..+..|.. ...+|+++|++.-.--+|..+...... ..++. .+.+..+.+ -++-+..++
T Consensus 365 ~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~-~~mg~~lt~e~~e~~~~~p~i~~~~~~ 443 (555)
T 3n0f_A 365 ILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAY-FAVVQNIKKEEIENLQKYHDIISRPSH 443 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHH-HHHCSSCCHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHH-HhcCCCCCHHHHHhcccchHHHHHHHH
Confidence 566777888889998888877743 346899999998665555432221111 11122 466665543 356778888
Q ss_pred HHhhhhhhhccccC
Q 014738 300 AYQLIDDVLDFTGT 313 (419)
Q Consensus 300 AfQI~DD~lD~~g~ 313 (419)
..-+.||+..|..+
T Consensus 444 i~RL~NDi~S~~~E 457 (555)
T 3n0f_A 444 IFRLCNDLASASAE 457 (555)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhccchhhhhh
Confidence 99999999998643
No 54
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=60.27 E-value=1.1e+02 Score=28.67 Aligned_cols=98 Identities=9% Similarity=-0.091 Sum_probs=60.5
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHhhcccCC-CCC-CHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHH--HHH
Q 014738 216 ALASLKNTEVVTLLATVVEHLVTGETMQMTTSSD-QRC-SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAI--LAF 291 (419)
Q Consensus 216 ~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~-~~~-s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~--~l~ 291 (419)
.+.....+.....+.+.+..++.+-..+..+... ..+ |+++|+.+-..-.|..+..++..-++--..+++..+ .+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~ 205 (337)
T 1ps1_A 126 RTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMS 205 (337)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHH
Confidence 3344445677788999999999998888766543 347 899999775544444333222211111123444332 445
Q ss_pred HHHHHHHHHHhhhhhhhccccC
Q 014738 292 DYGKNLGLAYQLIDDVLDFTGT 313 (419)
Q Consensus 292 ~~G~~lG~AfQI~DD~lD~~g~ 313 (419)
.+-...+...-+.||+..|..+
T Consensus 206 ~l~~~~~~i~rL~NDl~S~~kE 227 (337)
T 1ps1_A 206 AMLQIAVDVNLLLNDIASLEKE 227 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 6777888999999999999644
No 55
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=57.82 E-value=1.1e+02 Score=31.67 Aligned_cols=88 Identities=11% Similarity=0.071 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhhchHHHHHHHHHHHc--CCCHHHHHHH---HHHHHH
Q 014738 223 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA--GQTAEVAILA---FDYGKN 296 (419)
Q Consensus 223 ~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~yl~~i~~KTasL~~~a~~~ga~la--g~~~~~~~~l---~~~G~~ 296 (419)
..++..+.+++..++.+-..+..|.. ...+|+++|++.-.--+|..+-.+.. .++ ..+.+..+.+ -++-+.
T Consensus 361 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i~~~ 437 (550)
T 3m00_A 361 SHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKILEA 437 (550)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHHHHH
Confidence 34677888889999999988887743 34689999999866555544222211 232 2456655543 356788
Q ss_pred HHHHHhhhhhhhccccC
Q 014738 297 LGLAYQLIDDVLDFTGT 313 (419)
Q Consensus 297 lG~AfQI~DD~lD~~g~ 313 (419)
.+...-+.||+..+..+
T Consensus 438 ~~~I~RL~NDI~S~k~E 454 (550)
T 3m00_A 438 SVIICRVIDDTATYEVE 454 (550)
T ss_dssp HHHHHHHHHHHHSHHHH
T ss_pred HhhhheeeccchhHHHH
Confidence 89999999999998643
No 56
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=54.84 E-value=14 Score=35.38 Aligned_cols=81 Identities=26% Similarity=0.256 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC-hHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVV 226 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~-~~v~ 226 (419)
...+...-+.+=.|+-|.|||.| .++.+.|++|+-..+|...|--...-++..|...|..++. .+.+
T Consensus 205 ~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L 284 (304)
T 3lsn_A 205 LKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAAAEPL 284 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 34566677788899999999987 5688999999999999999999999999999999988763 2333
Q ss_pred HHHH-HHHHHHHHHH
Q 014738 227 TLLA-TVVEHLVTGE 240 (419)
Q Consensus 227 ~~ls-~~~~~l~~Gq 240 (419)
..++ ..+.+..+|.
T Consensus 285 ~~l~~~~~~R~~~~~ 299 (304)
T 3lsn_A 285 RELARYIVERRSEGH 299 (304)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHHhccccc
Confidence 3333 3345555554
No 57
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=54.09 E-value=25 Score=34.07 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC-hHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVV 226 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~-~~v~ 226 (419)
...+...-+.+=.|+-|.|||.| .++.+.|++|+-..+|...|--...-+..+|...|..++. .+.+
T Consensus 233 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~~~~L 312 (324)
T 3uca_A 233 IKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKGNTEPL 312 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 34566667778889999999976 3467788899999999999988888999999999988763 3344
Q ss_pred HHHH
Q 014738 227 TLLA 230 (419)
Q Consensus 227 ~~ls 230 (419)
..++
T Consensus 313 ~~la 316 (324)
T 3uca_A 313 KVLT 316 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 58
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=50.83 E-value=1.5e+02 Score=27.92 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=32.2
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 278 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 278 ~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
...|.+++....+...-+-+=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 38 ~~~~~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 84 (301)
T 2q80_A 38 HWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDN------------SKLRRGFPVAHSIY 84 (301)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHccccCC------------CCCCCCCcchhhcc
Confidence 334555554555666667788889999999762 35788888875554
No 59
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=50.11 E-value=20 Score=34.58 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC
Q 014738 160 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 221 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~ 221 (419)
...+...-+.+=.|+-|.|||.| .++.+.|++|+-..+|...|--...-+..+|...|..++
T Consensus 204 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~ 277 (317)
T 4f62_A 204 LAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFG 277 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34566677788899999999977 356788999999999999998888889999998888775
No 60
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=47.88 E-value=95 Score=29.88 Aligned_cols=53 Identities=26% Similarity=0.228 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHHH
Q 014738 273 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 337 (419)
Q Consensus 273 ~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~A 337 (419)
|.+++.+.|.+.+....+...-+-|=.++-|.||+.|= +|+|.|++|+-..|.
T Consensus 55 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 107 (334)
T 3rmg_A 55 VLLVARLYGAVTPATLHAAVSLELLHTASLVHDDVVDE------------STERRGQLSVNAIFN 107 (334)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcC
Confidence 33344433444444445556677888899999999773 467888888777664
No 61
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=47.47 E-value=1.8e+02 Score=27.05 Aligned_cols=64 Identities=5% Similarity=0.054 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccC
Q 014738 250 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 313 (419)
Q Consensus 250 ~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~ 313 (419)
..+++++|+.+-..-+|..+..++..-++=-..+++..+....+-...+...-+.||+..|..+
T Consensus 164 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE 227 (320)
T 3bny_A 164 RPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKE 227 (320)
T ss_dssp CCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3589999998876666654333322222212356777778888899999999999999999654
No 62
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=45.67 E-value=20 Score=34.28 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC
Q 014738 160 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 221 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~ 221 (419)
...+...-+.+=.|+-|.||+.| .++.+.|++|+-..+|...|--..+-+..+|...|..++
T Consensus 200 ~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 200 KEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34566667778889999999987 467888999998888888888888888888888888774
No 63
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=45.57 E-value=1.6e+02 Score=28.27 Aligned_cols=54 Identities=30% Similarity=0.187 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 271 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 271 ~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
.-|.+++.+.|.+.+....+...-+-|=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 59 ~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 59 MLTLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE------------SRQRRGRPTANLLW 112 (341)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhc
Confidence 3444555555555444555666677788899999999763 35677888765554
No 64
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=45.27 E-value=29 Score=33.21 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcC
Q 014738 160 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 220 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~ 220 (419)
...+...-+.+=.|+-|.||+.| .++.+.|++|+-..+|...|--...-+...|...|..+
T Consensus 208 ~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 208 IGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677788889999999977 24677888888888998888888888888888777765
No 65
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=44.72 E-value=60 Score=30.84 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC------------CCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHH
Q 014738 162 CIAEITEMIHVASLLHDDVLDD------------ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTL 228 (419)
Q Consensus 162 ~lA~avEliH~AsLIHDDIiD~------------s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~-~~v~~~ 228 (419)
.+...-+.|=.|+-|.||+.|- ++.+.|++|+-..+|...|--...-++..|...|..++. .+.+..
T Consensus 200 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~~~L~~ 279 (297)
T 3m0g_A 200 PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEAASTLRA 279 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4556667788899999999882 467888999999999999988899999999988887753 333433
Q ss_pred HHHH-HHHHHHH
Q 014738 229 LATV-VEHLVTG 239 (419)
Q Consensus 229 ls~~-~~~l~~G 239 (419)
+++. +.+-.+|
T Consensus 280 l~~~~~~R~~~~ 291 (297)
T 3m0g_A 280 CARYVIERDKEG 291 (297)
T ss_dssp HHHHHTC-----
T ss_pred HHHHHHHhcccc
Confidence 3332 3334444
No 66
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=42.57 E-value=89 Score=30.37 Aligned_cols=54 Identities=19% Similarity=0.015 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 271 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 271 ~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
.-|.+++.+.|.+.+....+...-+-|=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 60 ~l~ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 60 ALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG------------DEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHHHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCCCCCCccHHHhc
Confidence 3344555555666554555666667788899999999873 35778888865555
No 67
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=42.50 E-value=1.4e+02 Score=28.25 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=33.8
Q ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 273 CKAIALLAGQ---TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 273 ~~~ga~lag~---~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
|.+++.+.|. +.+....+...-+-+=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 53 vll~~~~~g~~~~~~~~~~~~A~aiEliH~aSLIHDDImD~------------s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 53 LLTFTYSIDRRSIMDPRILEAAAIVELLHVVSLLQDDVMDQ------------HDQRRGIKTPRAMY 107 (285)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSBSSSSBCHHHHH
T ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHCCCCCC------------CCCCCCCCcHHHhc
Confidence 3334444444 3344445566667788899999999762 45788888876655
No 68
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=42.06 E-value=32 Score=33.41 Aligned_cols=62 Identities=29% Similarity=0.281 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCC
Q 014738 160 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 221 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~ 221 (419)
...+...-+.+=.|+-|.|||.| .++.+.|++|+-..+|...|.-..+-+..+|...|..++
T Consensus 244 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 244 RQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34566667778889999999977 246778888998889988888888888888888877664
No 69
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=40.96 E-value=28 Score=33.24 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC
Q 014738 161 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 222 (419)
Q Consensus 161 ~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~ 222 (419)
..+...-+.+=.|+-|.||+.| .++.+.|++|+-..+|...|--...-+..+|...|..++.
T Consensus 212 ~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 285 (302)
T 3p8r_A 212 PHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPY 285 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3456667788889999999976 3466788899999999999988888899999988888763
No 70
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=40.70 E-value=51 Score=31.77 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC
Q 014738 160 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 222 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~ 222 (419)
...+...-+.+=.|+-|.|||.| .++.+.|++|+-..+|...|--...-++.+|...|..++.
T Consensus 211 ~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 211 FDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34566677788889999999976 3467889999999999999998888899999888887764
No 71
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=38.65 E-value=1.2e+02 Score=29.46 Aligned_cols=52 Identities=23% Similarity=0.163 Sum_probs=26.4
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 273 CKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 273 ~~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
|.+++.+.| .+.+....+...-+-|=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 82 ~ll~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~------------s~~RRG~pt~h~~~ 134 (360)
T 3lmd_A 82 ALLASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE------------ASMRRGVPSANARW 134 (360)
T ss_dssp HHHHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC------------CCCCCCCCcHHhhc
Confidence 344455555 44444445555667788899999999772 35677777765555
No 72
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=37.79 E-value=42 Score=32.18 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcCCC-hHHH
Q 014738 160 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVV 226 (419)
Q Consensus 160 ~~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~~~-~~v~ 226 (419)
...+...-+.+=.|+-|.|||.| .++.+.|++|+-..+|...|--...-+...|...|..++. .+.+
T Consensus 212 ~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L 291 (313)
T 3lom_A 212 KSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSKAAAL 291 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 34566677788889999999976 3467889999999999999999899999999888887753 3334
Q ss_pred HHHHH
Q 014738 227 TLLAT 231 (419)
Q Consensus 227 ~~ls~ 231 (419)
..+++
T Consensus 292 ~~la~ 296 (313)
T 3lom_A 292 IELTK 296 (313)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 73
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=35.98 E-value=2.7e+02 Score=25.98 Aligned_cols=50 Identities=18% Similarity=0.146 Sum_probs=33.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhh--hccccCccccCCCCccccccCcccHHHHH
Q 014738 275 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 275 ~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~--lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
+++.+.|.+++....+...-+-|=.+.-|.||+ .|= +|+|.|++|+=..|
T Consensus 56 ~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~------------s~~RRG~pt~h~~~ 107 (284)
T 2ftz_A 56 TLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDN------------ADFRRGXPSCHRTY 107 (284)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC------------CSEETTEECHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC------------CCCCCCCccHHhhc
Confidence 344444556554445566667777888999999 872 35788888876665
No 74
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=34.51 E-value=2.1e+02 Score=29.56 Aligned_cols=88 Identities=17% Similarity=0.008 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhhchHHHHHHHHHHHcC-CCHHH-HHH---HHHHHHHHH
Q 014738 225 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEV-AIL---AFDYGKNLG 298 (419)
Q Consensus 225 v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag-~~~~~-~~~---l~~~G~~lG 298 (419)
++..+.+++..++.+-..+..|.. ...+|+++|++.-..-+|...-. +..-..++. .+.+. .+. .-++-+..+
T Consensus 362 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~-~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~ 440 (549)
T 1n1b_A 362 CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII-SPTYFTFANASHDTAVIDSLYQYHDILCLAG 440 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH-HHHHTTSTTCCCCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHH-HHHHHHcCCCCcHHHHHhhhcccHHHHHHHH
Confidence 556677778888888777766642 23589999999755444432221 111111122 34444 333 345777888
Q ss_pred HHHhhhhhhhccccC
Q 014738 299 LAYQLIDDVLDFTGT 313 (419)
Q Consensus 299 ~AfQI~DD~lD~~g~ 313 (419)
+..-+.||+..|..+
T Consensus 441 ~i~RL~NDi~S~~~E 455 (549)
T 1n1b_A 441 IILRLPDDLGTSYFE 455 (549)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHhcccchhhhh
Confidence 899999999988644
No 75
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=33.74 E-value=4.1e+02 Score=27.24 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCC-CCCCHHHHHHHHhhhhhchHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHH
Q 014738 225 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILA---FDYGKNLGL 299 (419)
Q Consensus 225 v~~~ls~~~~~l~~Gq~~dl~~~~~-~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag-~~~~~~~~l---~~~G~~lG~ 299 (419)
++..+.+++..++.+-..+..|... ..+|+++|++.-..-+|...-.. ..-..++. .+.+..+.+ -++-+..++
T Consensus 356 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~-~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~ 434 (543)
T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLT-HIFFRVTDSFTKETVDSLYKYHDLVRWSSF 434 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHH-HHHHHHSSCCCHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHH-HHHHHcCCCCCHHHHHHhcccHHHHHHHHH
Confidence 5667778888888888887766433 35799999987655444332222 22212232 455554442 356677788
Q ss_pred HHhhhhhhhccccC
Q 014738 300 AYQLIDDVLDFTGT 313 (419)
Q Consensus 300 AfQI~DD~lD~~g~ 313 (419)
..-+.||+..+..+
T Consensus 435 i~RL~NDi~S~~~E 448 (543)
T 2ong_A 435 VLRLADDLGTSVEE 448 (543)
T ss_dssp HHHHHHHHHSSHHH
T ss_pred HHHHhcccchhhhc
Confidence 88899999988644
No 76
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=33.53 E-value=1.4e+02 Score=32.51 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhhchH--HHHHHHHHHHcC-CCHHHHHHHH-----HHHH
Q 014738 225 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAG-QTAEVAILAF-----DYGK 295 (419)
Q Consensus 225 v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~yl~~i~~KTasL~--~~a~~~ga~lag-~~~~~~~~l~-----~~G~ 295 (419)
++..+-++...++.+-..+..|.. ...+|+++|++.-.--+|.-. ...+..+ ++. .+.+..+... ++-+
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~ 703 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTE 703 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHH
Confidence 566677788888888887776632 346899999997655444422 2222222 222 4566666654 6678
Q ss_pred HHHHHHhhhhhhhccccC
Q 014738 296 NLGLAYQLIDDVLDFTGT 313 (419)
Q Consensus 296 ~lG~AfQI~DD~lD~~g~ 313 (419)
..+...-+.||+..|..+
T Consensus 704 ~~~~I~RL~NDi~S~k~E 721 (817)
T 3sdr_A 704 LNSLISRLADDTKTYKAE 721 (817)
T ss_dssp HHHHHHHHHHHHHSSCC-
T ss_pred HHHHHHHHhccchHHHHH
Confidence 888899999999998644
No 77
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=32.20 E-value=1.6e+02 Score=28.00 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=32.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 273 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 273 ~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
|.+++.+.|.+.+....+...-+-+=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 52 ~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 103 (325)
T 3aqb_B 52 VLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYIDN------------SDMRRGNTSVHIAF 103 (325)
T ss_dssp HHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHT
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCCCccccc
Confidence 44444444544343444555666777888999999772 35677777765443
No 78
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=32.09 E-value=1.9e+02 Score=31.28 Aligned_cols=87 Identities=7% Similarity=0.017 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHhhhhhch-HHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Q 014738 225 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILA---FDYGKNLG 298 (419)
Q Consensus 225 v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~yl~~i~~KTasL-~~~a~~~ga~lag-~~~~~~~~l---~~~G~~lG 298 (419)
++..+.++...++.+-..+..|.. ...+|+++|++.-.--+|.. +...+..+ ++. .+.+..+.. .++-+..+
T Consensus 567 ~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~ 644 (764)
T 3p5p_A 567 MLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVS 644 (764)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHH
Confidence 566777888888888887776632 34689999999766555543 22222222 222 355555554 45778888
Q ss_pred HHHhhhhhhhccccC
Q 014738 299 LAYQLIDDVLDFTGT 313 (419)
Q Consensus 299 ~AfQI~DD~lD~~g~ 313 (419)
...-+.||+..|..+
T Consensus 645 ~I~RL~NDi~S~k~E 659 (764)
T 3p5p_A 645 LSWRLTNDTKTYQAE 659 (764)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchHHH
Confidence 999999999998643
No 79
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=31.37 E-value=77 Score=30.03 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------CCCCCCCCCcchhccC--------HHHHHHHHHHHHHHHHHHHHcCCCh
Q 014738 161 QCIAEITEMIHVASLLHDDVLD------DADTRRGIGSLNFVMG--------NKLAVLAGDFLLSRACVALASLKNT 223 (419)
Q Consensus 161 ~~lA~avEliH~AsLIHDDIiD------~s~~RRG~pt~h~~~G--------~~~AVl~GD~Lla~A~~~la~~~~~ 223 (419)
..+...-+.+=.|+-|.|||.| +.+.+.|++|+-..|+ ...|.-...-+..+|...|..+++.
T Consensus 190 ~~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~~ 266 (295)
T 3ipi_A 190 ERFSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3455666778889999999987 3456778888887777 6666666677778888888877653
No 80
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=30.79 E-value=2e+02 Score=27.05 Aligned_cols=48 Identities=29% Similarity=0.246 Sum_probs=30.4
Q ss_pred HHHcCC-CHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 277 ALLAGQ-TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 277 a~lag~-~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
+.+.|. +.+....+...-+-+=.+.=|.||+.|= +|+|.|++|+-..|
T Consensus 52 ~~~~g~~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 100 (299)
T 1v4e_A 52 FKNRGVEIGEDAISSLAALELVHLASLLHDDVIDG------------ARFRRGKETINFMY 100 (299)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHHHHHhhCCCCCC------------CCCCCCCCchhhhc
Confidence 333344 3333344555566677788899999772 35788888876555
No 81
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=28.92 E-value=76 Score=30.34 Aligned_cols=60 Identities=20% Similarity=0.121 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHcC
Q 014738 161 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 220 (419)
Q Consensus 161 ~~lA~avEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~~ 220 (419)
..+...-+.+=.|+-|.||+.| .++.+.|++|+-..+|...|--.-.-++..|...|..+
T Consensus 208 ~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~ 279 (309)
T 3pde_A 208 PAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGL 279 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3456667778889999999977 35788899999999998888877778888888777763
No 82
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=28.69 E-value=2.3e+02 Score=27.17 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=35.1
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 274 KAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 274 ~~ga~lag-~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
.+++.+++ .+.+....+...-+-|=.++=|.||+.|= +|+|.|++|+-..|
T Consensus 64 l~~~~~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 115 (334)
T 3pko_A 64 YLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDVIDD------------SPTRRGVRTIQMTY 115 (334)
T ss_dssp HHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCccCCC------------CCCcCCCccHHHHc
Confidence 33444444 46665566666778888899999999772 45788888876555
No 83
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=27.71 E-value=2e+02 Score=27.82 Aligned_cols=51 Identities=24% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 274 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 274 ~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
.+++.+.|.+.+....+...-+-|=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 54 l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 104 (358)
T 4dhd_A 54 LAAAEAVSGQWRPALPAAAIVELIHNYSLIYDDIIDR------------GDVRRGLPTVRKAF 104 (358)
T ss_dssp HHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHHTT------------CCEETTEECHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCccccC------------CCCcCCCccHHHhc
Confidence 3334333333333444555667788899999999762 45788888876655
No 84
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=26.34 E-value=4.2e+02 Score=25.21 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=31.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 277 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 277 a~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
+...|.+.+....+...-+-|=.|.=|.||+.|= +|+|.|++|+-..|
T Consensus 52 ~~~~~~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 99 (340)
T 2e8v_A 52 NRVMNLPKDQLAIVSQIVELLHNSSLLIDDIEDN------------APLRRGQTTSHLIF 99 (340)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCcchhhcc
Confidence 3444555554455566666777888899999762 35777888765444
No 85
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=25.91 E-value=1.7e+02 Score=27.78 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC--CCC--------CCCCCcchhccCHHHHHHHHHHHHHHHHHHHHc
Q 014738 161 QCIAEITEMIHVASLLHDDVLDD--ADT--------RRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 219 (419)
Q Consensus 161 ~~lA~avEliH~AsLIHDDIiD~--s~~--------RRG~pt~h~~~G~~~AVl~GD~Lla~A~~~la~ 219 (419)
..+...-+.|=.|+-|.||+.|- ++. +.|++|+-..+|...|--.-.-++..|...|..
T Consensus 213 ~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 213 KWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35666777888899999999772 211 778888888899988888888889999888887
No 86
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=25.83 E-value=3.8e+02 Score=24.35 Aligned_cols=64 Identities=6% Similarity=0.057 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHhhhhhchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccC
Q 014738 250 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 313 (419)
Q Consensus 250 ~~~s~~~yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~ 313 (419)
..+|+++|+.+-..-+|..+..++..-++=-..+++..+.+..+-...+...-+.||+..|..+
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE 213 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKE 213 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3589999999766555544333322222212356777778888999999999999999999654
No 87
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=24.48 E-value=3.2e+02 Score=25.56 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=33.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHHH
Q 014738 273 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 337 (419)
Q Consensus 273 ~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~A 337 (419)
|.+++.+.|.+++....+...-+-+=.+.=|.||+.|= +|+|.|++|+-..|.
T Consensus 57 ~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D~------------s~~RRG~pt~h~~~G 109 (289)
T 2azj_A 57 NMFFTVALGGDIKDSYGGALAIEILHSASLALCDIVDL------------DATRRGDKAAWVVYG 109 (289)
T ss_dssp HHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHTT------------CCBSSSSBCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC------------CCCCCCCccHHHhcC
Confidence 34444444555443344555566677888899999662 357888888766553
No 88
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=24.32 E-value=5e+02 Score=25.21 Aligned_cols=151 Identities=13% Similarity=0.010 Sum_probs=81.9
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCcchhcc--CHH--HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhh
Q 014738 169 MIHVASLLHDDVLDDADTRRGIGSLNFVM--GNK--LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 244 (419)
Q Consensus 169 liH~AsLIHDDIiD~s~~RRG~pt~h~~~--G~~--~AVl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl 244 (419)
.+.++..+.||+.|++.. ....++..+ |.. ..++. .+...+.-+...-.+.....|.+.+.+-..|...+.
T Consensus 91 d~~~~~F~lDD~~d~~~~--~l~~~~~~ll~G~~~~~Pl~~---al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea 165 (374)
T 1yyq_A 91 IHYTYTLVLDDSKDDPYP--TMVNYFDDLQAGREQAHPWWA---LVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQ 165 (374)
T ss_dssp HHHHHHHHHTTCCSCSHH--HHTTHHHHHHHTCCCSSHHHH---HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccccCcHH--HHHHHHHHHhcCCCCCChHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788889999987531 111122111 110 01111 122223334444557777888888888888888775
Q ss_pred cccCCCCCCHHHHHHHHhhhhhchHHHHHHHHHHHc-CCC------HHHHHHHHHHHHHHHHHHhhhhhhhccccCcccc
Q 014738 245 TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLA-GQT------AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 317 (419)
Q Consensus 245 ~~~~~~~~s~~~yl~~i~~KTasL~~~a~~~ga~la-g~~------~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~ 317 (419)
.+ ....++..+|....+.+||..- ++ .+.++. ..- ++....+..+...+ =..||++.|.-+....
T Consensus 166 ~n-~~~~p~~~~Y~~~rR~~sG~~E--~~-~~~~~P~~~~~e~~~~~~~~~~i~am~~~i----~~~NDIlSf~KE~~~~ 237 (374)
T 1yyq_A 166 YN-FGGFPGSHDYPQFLRRMNGLGH--CV-GASLWPKEQFNERSLFLEITSAIAQMENWM----VWVNDLMSFYKEFDDE 237 (374)
T ss_dssp TC-CCCCTTCTTHHHHHHHHHHCHH--HH-HHTTCCTTTCCTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTCS
T ss_pred hc-cCCCCCHHHHHHHHHhhccHHH--HH-HHhhccccccchhhcchhHHHHHHHHHHHH----Hhhhhhhccchhhhcc
Confidence 54 3445678889998899999731 11 111221 111 23444444444433 3468999886443111
Q ss_pred CCCCccccccCcccHHHHHHhhhC
Q 014738 318 GKGSLSDIRHGIITAPILFAMEEF 341 (419)
Q Consensus 318 GK~~~~Dl~~gk~TlPll~Al~~~ 341 (419)
+| ..+++.+++....
T Consensus 238 -----Gd----~~NlV~vl~~~~g 252 (374)
T 1yyq_A 238 -----RD----QISLVKNYVVSDE 252 (374)
T ss_dssp -----SC----CCCHHHHHHHHHT
T ss_pred -----CC----ccchhhhehhcCC
Confidence 12 3467777766554
No 89
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=21.55 E-value=3e+02 Score=26.27 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=32.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhccccCccccCCCCccccccCcccHHHHH
Q 014738 274 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 336 (419)
Q Consensus 274 ~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD~~g~~~~~GK~~~~Dl~~gk~TlPll~ 336 (419)
.+++.+.|.+++....+...-+-|=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 55 l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 105 (342)
T 1wy0_A 55 LTSTEAVGGDPLRAIYPAVAIELIHNYSLVHDDIMDM------------DETRRGKPTVHRIW 105 (342)
T ss_dssp HHHTTTTTSCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCCSTTSCCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCcccC------------CCCCCCCCcccccc
Confidence 3344444544443344555666777888999999772 35777888866555
No 90
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=20.96 E-value=2.4e+02 Score=27.16 Aligned_cols=39 Identities=28% Similarity=0.096 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 014738 271 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 309 (419)
Q Consensus 271 ~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DD~lD 309 (419)
.-|.+++.+.|.+.+....+...-+-|=.+.-|.||+.|
T Consensus 71 ~l~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 71 LMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 334455555555544445556666778889999999977
Done!