BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014739
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate
Dehydrogenase 1 Complex With Nad
Length = 354
Score = 357 bits (917), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 182/353 (51%), Positives = 241/353 (68%), Gaps = 5/353 (1%)
Query: 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT 116
G + KV +VGSGNWGS +K++ N +L+ F V MWVFEE + G+KLT++IN
Sbjct: 4 GSMASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDI-GGKKLTEIINTQ 62
Query: 117 NENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS 176
+ENVKYLPG KL NVVA PD+ A +DA++L+FV PHQF+ IC +L G + + IS
Sbjct: 63 HENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGIS 122
Query: 177 LIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEK 236
LIKG++ G +IS +I E+LG+ VLMGANIA+E+A EKF E T+G +D + +
Sbjct: 123 LIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQ-GQL 181
Query: 237 WVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMR 296
+L TP F +T VQ+V+ VE+CG LKNVVA+ AGF DGL G+NTKAA++R+GL EM
Sbjct: 182 LKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMI 241
Query: 297 AFSKLLFSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQG 355
AF+KL S V +TF ESCGVADLITTC GGRNRKVAEAFA+ +S + LE E+L G
Sbjct: 242 AFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKELLNG 299
Query: 356 QKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKPR 408
QKLQG TARE+Y +L H+G ++ FPLF V+++C P + + P
Sbjct: 300 QKLQGPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPE 352
>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
pdb|1WPQ|B Chain B, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
Length = 349
Score = 355 bits (911), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 181/347 (52%), Positives = 239/347 (68%), Gaps = 5/347 (1%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K++ N +L+ F V MWVFEE + G+KLT++IN +ENVKY
Sbjct: 5 KVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDI-GGKKLTEIINTQHENVKY 63
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL NVVA PD+ A +DA++L+FV PHQF+ IC +L G + + ISLIKG++
Sbjct: 64 LPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANPTGISLIKGVD 123
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
G +IS +I E+LG+ VLMGANIA+E+A EKF E T+G +D + + +L
Sbjct: 124 EGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQ-GQLLKELMQ 182
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T VQ+V+ VE+CG LKNVVA+ AGF DGL G+NTKAA++R+GL EM AF+KL
Sbjct: 183 TPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLF 242
Query: 303 FSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
S V +TF ESCGVADLITTC GGRNRKVAEAFA+ +S + LE E+L GQKLQG
Sbjct: 243 CSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKELLNGQKLQGP 300
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKPR 408
TARE+Y +L H+G ++ FPLF V+++C P + + P
Sbjct: 301 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPE 347
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 353 bits (906), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 180/346 (52%), Positives = 238/346 (68%), Gaps = 5/346 (1%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K+I +N +L F V+MWVFEET+ +G KLTD+IN +ENVKY
Sbjct: 7 KVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETV-NGRKLTDIINNDHENVKY 65
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL +NVVA +L AV+DA++LVFV PHQF+ IC + G+V I+LIKG++
Sbjct: 66 LPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGID 125
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
EG +IS +I E++G+ VLMGANIANE+A EKF E T+G + E + +L
Sbjct: 126 EGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSK-VMENGLLFKELLQ 184
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T V D + VELCG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+++
Sbjct: 185 TPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARIF 244
Query: 303 F-SSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
V +TF ESCGVADLITTC GGRNR+VAEAFA+ ++ ++LE EML GQKLQG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFART--GKTIEELEKEMLNGQKLQGP 302
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
T+ EVY +L +G L+ FPLF V++IC P ++ + P
Sbjct: 303 QTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHP 348
>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
pdb|1X0V|B Chain B, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
Length = 354
Score = 348 bits (894), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 179/353 (50%), Positives = 237/353 (67%), Gaps = 5/353 (1%)
Query: 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT 116
G KV +VGSGNWGS +K++ N +L+ F V WVFEE + G+KLT++IN
Sbjct: 4 GSXASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTXWVFEEDI-GGKKLTEIINTQ 62
Query: 117 NENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS 176
+ENVKYLPG KL NVVA PD+ A +DA++L+FV PHQF+ IC +L G + + IS
Sbjct: 63 HENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGIS 122
Query: 177 LIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEK 236
LIKG++ G +IS +I E+LG+ VL GANIA+E+A EKF E T+G +D + +
Sbjct: 123 LIKGVDEGPNGLKLISEVIGERLGIPXSVLXGANIASEVADEKFCETTIGCKDPAQ-GQL 181
Query: 237 WVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMR 296
+L TP F +T VQ+V+ VE+CG LKNVVA+ AGF DGL G+NTKAA++R+GL E
Sbjct: 182 LKELXQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLXEXI 241
Query: 297 AFSKLLFSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQG 355
AF+KL S V +TF ESCGVADLITTC GGRNRKVAEAFA+ +S + LE E+L G
Sbjct: 242 AFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKELLNG 299
Query: 356 QKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKPR 408
QKLQG TARE+Y +L H+G ++ FPLF V+++C P + + P
Sbjct: 300 QKLQGPETARELYSILQHKGLVDKFPLFXAVYKVCYEGQPVGEFIHCLQNHPE 352
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 306 bits (783), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/343 (47%), Positives = 229/343 (66%), Gaps = 13/343 (3%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSS-FHDEVRMWVFEETLPSGEKLTDVINRTNENVK 121
KVTV+GSGNWG+ +K++A N F V+MWVFEE + +GEKLT++IN ++NVK
Sbjct: 36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEI-NGEKLTEIINTRHQNVK 94
Query: 122 YLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181
YLPGI L N+VA+PDL ++VKD +++VF PHQF+ IC +L G V+ V AIS +KG
Sbjct: 95 YLPGITLPDNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF 154
Query: 182 EVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYR-------DNREIA 234
EV +G ++S+ I+E+LG+ C L GANIA E+A E +SE TV Y + +++
Sbjct: 155 EVGAKGVQLLSSYITEELGIQCGALSGANIATEVAQEHWSETTVAYHIPKDFRGEGKDVD 214
Query: 235 EKWVQ-LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293
K ++ LF PYF V+ ++DV G+ +CG LKNVVA+ GFV+GL GNN AAI R+GL
Sbjct: 215 HKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQRVGLG 274
Query: 294 EMRAFSKLLFSSVKDSTFF-ESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEM 352
E+ F ++ F ++ T++ ES GVADLITTC GGRN KVA A + GK ++ + E E+
Sbjct: 275 EIIRFGQMFFPESREETYYQESAGVADLITTCAGGRNVKVARLMATS-GKDAW-ECEKEL 332
Query: 353 LQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLP 395
L GQ QG+ T +EV+E L G +E FPLF V++I + P
Sbjct: 333 LNGQSAQGLITCKEVHEWLETCGSVEDFPLFEAVYQIVYNNYP 375
>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
Length = 375
Score = 280 bits (717), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 217/350 (62%), Gaps = 9/350 (2%)
Query: 56 DGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR 115
DG L K++++GSGNW S SK++ +N F +EVRMW+ +E + +GE++ D+IN
Sbjct: 19 DGPL---KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFV-NGERMVDIINN 74
Query: 116 TNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVG----KVNGD 171
+EN KYL G+ L N+VA DL + + DA++L+F+ P Q++E + + K+
Sbjct: 75 KHENTKYLKGVPLPHNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASH 134
Query: 172 VEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNR 231
+AISL KG VK+ + S IS+ L + C L GANIA ++A+E FSEAT+G D
Sbjct: 135 AKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAMDVAMENFSEATIGGNDKD 194
Query: 232 EIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIG 291
+ W ++F PYF + V + VE+CG LKN++ +A GF DGL + N+K+AI+R G
Sbjct: 195 SLV-IWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNG 253
Query: 292 LREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAE 351
+ EM F K+ F ++ ESCG AD+IT+ L GRN K + F K+ K+++++LE E
Sbjct: 254 INEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAEFIKSTPKKTWEELENE 313
Query: 352 MLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVE 401
+L+GQKLQG T + VY ++ + FPLF +H+I + PS++++
Sbjct: 314 ILKGQKLQGTVTLKYVYHMIKEKNMTNEFPLFTVLHKISFENEDPSSLLK 363
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 166/350 (47%), Gaps = 26/350 (7%)
Query: 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENV 120
K + ++G+G+WG+ + ++A +VR+W +E D + N
Sbjct: 29 KHPIAILGAGSWGTALALVLARKG-------QKVRLWSYES------DHVDEMQAEGVNN 75
Query: 121 KYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180
+YLP + + A DL+ +++ ++ V P + R+ ++ KG
Sbjct: 76 RYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKG 135
Query: 181 MEVKREGPCMISTLISEQLG-VSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQ 239
+ +G ++ +++ +LG V V+ G ++A E+A + ++ +N + ++ ++
Sbjct: 136 LA---KGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLA-SNNSQFSKDLIE 191
Query: 240 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFS 299
F V D+ GVELCG++KN++AIA G DGL++G+N +AA++ GL EM
Sbjct: 192 RLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLV 251
Query: 300 KLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQ 359
+ K T G+ DL+ TC ++R A EG D EA+ GQ ++
Sbjct: 252 SVFGG--KQETLTGLAGLGDLVLTCTDNQSRNRRFGLALGEG---VDKKEAQQAIGQAIE 306
Query: 360 GVSTAREVYEVLSHRGWLELFPLFATVHEICVGHL-PPSAIVEYSERKPR 408
G+ +V+ L+ + +E+ PL VH I L P A+ E ER P+
Sbjct: 307 GLYNTDQVH-ALAQKHAIEM-PLTFQVHRILHEDLDPQQAVQELLERSPK 354
>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
pdb|1Z82|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
Length = 335
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 35/307 (11%)
Query: 66 VVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPG 125
V+G+G+WG+V ++ + N +EV +W + ++ D+IN ++ + Y+
Sbjct: 19 VLGAGSWGTVFAQXLHENG-------EEVILWARRK------EIVDLINVSHTS-PYVEE 64
Query: 126 IKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKR 185
K+ V A DLE +K ++LV P Q++ RL K + ++L KG+E+K
Sbjct: 65 SKI--TVRATNDLEE-IKKEDILVIAIPVQYIREHLLRLPVKPS---XVLNLSKGIEIKT 118
Query: 186 EGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPY 245
+S ++ E LG VL G + A E+A + + T+ +++E+ ++ ST Y
Sbjct: 119 --GKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAGENSKELQKR----ISTEY 172
Query: 246 FMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSS 305
F V +DV GVE+ G LKNV+AIAAG +DG +N KAA+ G+ E+ F F
Sbjct: 173 FRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGX--FFG 230
Query: 306 VKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVST 363
TF G+ DL TC RNR+ E A R F+ L+ Q ++G T
Sbjct: 231 ADQKTFXGLAGIGDLXVTCNSRYSRNRRFGELIA-----RGFNPLKLLESSNQVVEGAFT 285
Query: 364 AREVYEV 370
+ V ++
Sbjct: 286 VKAVXKI 292
>pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-phosphate Dehydrogenase
pdb|1EVZ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With Nad
pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With
2-Fluoro-6-Chloropurine
pdb|1M66|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Chloro-Purine
pdb|1M67|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Hydroxy-Purine
pdb|1N1E|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1E|B Chain B, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1G|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase With Inhibitor Bcp
Length = 366
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 32/288 (11%)
Query: 48 SSFSSGSDDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFH---DEVRMWVFEETLP 104
S+ + D +L+ +K V GSG +G+ + +++ + +H +EVR+
Sbjct: 2 STKQHSAKDELLYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRL-------- 53
Query: 105 SGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRL 164
+N ENV +L G++L N+ D+E A A +++FV P QF+ G ++
Sbjct: 54 --------VNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKS 105
Query: 165 VGKV-----NGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVE 218
G + V + KG+E R + +I E L VL G + A E+A
Sbjct: 106 GGNLIAYAKEKQVPVLVCTKGIE--RSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATG 163
Query: 219 KFSEATVGYRDNREIAEKWVQLFSTP--YFMVTAVQDVEGVELCGTLKNVVAIAAGFVDG 276
F+ ++ D +A + ++ ST F+ A D G E+ +KNV+AI +G +G
Sbjct: 164 VFTCVSIASAD-INVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANG 222
Query: 277 LEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTC 324
L MG N +AA++ GL E+R + L S F G+ DL TC
Sbjct: 223 LGMGLNARAALIMRGLLEIRDLTAALGGD--GSAVFGLAGLGDLQLTC 268
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 13/178 (7%)
Query: 203 CCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT 262
+ G IA E+A ++ V + A K ++F T YF V D+ G E+
Sbjct: 132 TVAITGPAIAREVA-KRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSA 190
Query: 263 LKNVVAIAAGFVDGLEMG-----NNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGV 317
LKNV +IA ++ G E +N K I + EM ++L T F G
Sbjct: 191 LKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGD--RETAFGLSGF 248
Query: 318 ADLITTCLGGRNRKVAEAFAKNEGKRSFDDL--EAEMLQGQKLQGVSTAREVYEVLSH 373
DLI T GGRN + E K S D+ E E ++G TA + Y + S
Sbjct: 249 GDLIATFRGGRNGMLGELLGKG---LSIDEAMEELERRGVGVVEGYKTAEKAYRLSSK 303
>pdb|1A4S|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
Length = 503
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 17/108 (15%)
Query: 81 ASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140
+ T L H V F ++P+G+K+ ++ +T ++V G K + D +LEN
Sbjct: 221 GAETGSLLCHHPNVAKVSFTGSVPTGKKVMEMSAKTVKHVTLELGGKSPLLIFKDCELEN 280
Query: 141 AVKDANMLVFVTP-----------------HQFMEGICKRLVGKVNGD 171
AV+ A M F+T QF+E + KR V GD
Sbjct: 281 AVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVGD 328
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 308 DSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVST--AR 365
++ +F+S + D + +C + + +AE F K+ + D ++ LQ + T
Sbjct: 16 ENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKN 75
Query: 366 EVYEVLSH 373
+ YE L H
Sbjct: 76 QEYETLDH 83
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 118 ENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVT--PHQFMEGICKRLVGKVNGDVEAI 175
EN++Y G+ V ++E AVK+AN F+ PHQF + +R G + I
Sbjct: 482 ENIRY------GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI 535
Query: 176 SLIKGM 181
++ + +
Sbjct: 536 AIARAL 541
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 118 ENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVT--PHQFMEGICKRLVGKVNGDVEAI 175
EN++Y G+ V ++E AVK+AN F+ PHQF + +R G + I
Sbjct: 482 ENIRY------GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI 535
Query: 176 SLIKGM 181
++ + +
Sbjct: 536 AIARAL 541
>pdb|2V4J|B Chain B, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate Respiration
pdb|2V4J|E Chain E, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate Respiration
Length = 381
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 195 ISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFST 243
IS+ G +++G ++N I++ KFS+ V Y N +W L T
Sbjct: 273 ISDGEGDGVVIMVGGKVSNRISMPKFSKVVVAYIPNE--PPRWPSLTKT 319
>pdb|3PZS|A Chain A, Crystal Structure Of A Pyridoxamine Kinase From Yersinia
Pestis Co92
pdb|3PZS|B Chain B, Crystal Structure Of A Pyridoxamine Kinase From Yersinia
Pestis Co92
Length = 289
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 10/122 (8%)
Query: 254 VEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFE 313
V+G+ LK+ A+ +G++ E G++ AA+ ++ A+ F +
Sbjct: 66 VQGIADIDRLKDCDAVLSGYIGSPEQGSHILAAVAQVKQANPDAW---YFCDPVXGHPEK 122
Query: 314 SCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373
C VA + ++ A N LE E L G++++ V A +V L
Sbjct: 123 GCIVAPGVAEFFCNEALPASDXIAPNL-------LELEQLSGERVENVEQAVQVARSLCA 175
Query: 374 RG 375
RG
Sbjct: 176 RG 177
>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
Length = 298
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 11/138 (7%)
Query: 281 NNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFES--CGVADLITTCLGGRNRKVAEAFA- 337
NN++ A + LR F++L F ++ F S C A L+ L G F
Sbjct: 61 NNSRRARPELALR----FARLGFGGLRAEQLFSSALC-AARLLRQRLPGPPDAPGAVFVL 115
Query: 338 KNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPS 397
EG R+ L G G A V VL G+ E F FA + E C P
Sbjct: 116 GGEGLRAELRAAGLRLAGDPSAGDGAAPRVRAVLV--GYDEHFS-FAKLREACAHLRDPE 172
Query: 398 AIVEYSERKPRLSLLEGS 415
++ ++R P L +GS
Sbjct: 173 CLLVATDRDPWHPLSDGS 190
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 11/138 (7%)
Query: 281 NNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFES--CGVADLITTCLGGRNRKVAEAFA- 337
NN++ A + LR F++L F ++ F S C A L+ L G F
Sbjct: 61 NNSRRARPELALR----FARLGFGGLRAEQLFSSALC-AARLLRQRLPGPPDAPGAVFVL 115
Query: 338 KNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPS 397
EG R+ L G G A V VL G+ E F FA + E C P
Sbjct: 116 GGEGLRAELRAAGLRLAGDPSAGDGAAPRVRAVLV--GYDEHFS-FAKLREACAHLRDPE 172
Query: 398 AIVEYSERKPRLSLLEGS 415
++ ++R P L +GS
Sbjct: 173 CLLVATDRDPWHPLSDGS 190
>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
pdb|2P27|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Mg2+ At 1.9 A Resolution
pdb|2P69|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Plp
Length = 306
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 11/138 (7%)
Query: 281 NNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFES--CGVADLITTCLGGRNRKVAEAFA- 337
NN++ A + LR F++L F ++ F S C A L+ L G F
Sbjct: 61 NNSRRARPELALR----FARLGFGGLRAEQLFSSALC-AARLLRQRLPGPPDAPGAVFVL 115
Query: 338 KNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPS 397
EG R+ L G G A V VL G+ E F FA + E C P
Sbjct: 116 GGEGLRAELRAAGLRLAGDPSAGDGAAPRVRAVLV--GYDEHFS-FAKLREACAHLRDPE 172
Query: 398 AIVEYSERKPRLSLLEGS 415
++ ++R P L +GS
Sbjct: 173 CLLVATDRDPWHPLSDGS 190
>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
Length = 350
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 107 EKLTDVINRTNENVKYLPGIKLGKNVVA---DPDLENAVKDANMLVFVT---PHQFMEGI 160
E+L+DV++ T+ ++ +L G G +VA +P + +V ++ + T H +E
Sbjct: 151 ERLSDVVDPTDRSISFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELR 210
Query: 161 CKRLVGKVNGDVEAISLIKGM---EVKREGPCM 190
+ GD AI+ +GM ++++GP +
Sbjct: 211 DAVEHARTTGDASAITGAEGMLWPTLRQDGPSV 243
>pdb|1R0K|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|C Chain C, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|D Chain D, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0L|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
Length = 388
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 210 NIANEIAVEKFSEATVGYRDNREIAEKWVQLFS--TPYFMVTAVQDVEGVE 258
N ANEIAV F + +G+ D +I EK + ++ TP ++++DV ++
Sbjct: 326 NAANEIAVAAFLDKKIGFLDIAKIVEKTLDHYTPATP----SSLEDVFAID 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,390,024
Number of Sequences: 62578
Number of extensions: 449594
Number of successful extensions: 1115
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 27
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)