Query 014739
Match_columns 419
No_of_seqs 235 out of 2636
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:03:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0240 GpsA Glycerol-3-phosph 100.0 1.9E-56 4.2E-61 428.9 36.2 321 61-406 1-324 (329)
2 PTZ00345 glycerol-3-phosphate 100.0 2.9E-55 6.3E-60 434.7 40.0 345 61-408 11-358 (365)
3 TIGR03376 glycerol3P_DH glycer 100.0 9.8E-54 2.1E-58 421.2 38.0 335 63-403 1-342 (342)
4 PRK12439 NAD(P)H-dependent gly 100.0 6.7E-50 1.5E-54 397.0 38.3 333 58-416 4-340 (341)
5 KOG2711 Glycerol-3-phosphate d 100.0 2.3E-48 4.9E-53 368.0 33.2 349 58-408 18-369 (372)
6 PRK14620 NAD(P)H-dependent gly 100.0 2.2E-44 4.8E-49 356.0 36.2 320 62-404 1-325 (326)
7 PRK14618 NAD(P)H-dependent gly 100.0 1.1E-41 2.3E-46 337.1 36.7 320 60-407 3-324 (328)
8 PRK00094 gpsA NAD(P)H-dependen 100.0 4.3E-40 9.2E-45 324.9 36.1 320 61-405 1-324 (325)
9 PRK14619 NAD(P)H-dependent gly 100.0 3.8E-39 8.2E-44 316.1 36.1 295 60-406 3-301 (308)
10 PRK06249 2-dehydropantoate 2-r 100.0 4.8E-28 1E-32 238.1 23.0 284 59-392 3-307 (313)
11 PRK06522 2-dehydropantoate 2-r 100.0 1.6E-27 3.4E-32 233.0 21.1 283 62-393 1-297 (304)
12 COG1893 ApbA Ketopantoate redu 100.0 1.9E-27 4.2E-32 232.0 21.5 282 62-392 1-298 (307)
13 PRK05708 2-dehydropantoate 2-r 100.0 2.6E-27 5.6E-32 231.9 19.2 282 61-392 2-295 (305)
14 PRK12921 2-dehydropantoate 2-r 99.9 1.5E-26 3.2E-31 226.4 21.9 283 62-392 1-299 (305)
15 PRK08229 2-dehydropantoate 2-r 99.9 1.9E-25 4.2E-30 222.1 24.1 291 61-391 2-314 (341)
16 COG2084 MmsB 3-hydroxyisobutyr 99.9 3.6E-25 7.9E-30 211.2 18.4 271 62-404 1-286 (286)
17 PF01210 NAD_Gly3P_dh_N: NAD-d 99.9 1E-24 2.2E-29 193.2 15.4 155 63-233 1-156 (157)
18 TIGR00745 apbA_panE 2-dehydrop 99.9 9.5E-24 2.1E-28 205.2 19.3 275 71-393 1-290 (293)
19 PF07479 NAD_Gly3P_dh_C: NAD-d 99.9 6.2E-24 1.3E-28 185.3 12.2 146 252-403 1-149 (149)
20 KOG0409 Predicted dehydrogenas 99.9 5.4E-23 1.2E-27 193.0 18.4 278 59-405 33-322 (327)
21 PRK15461 NADH-dependent gamma- 99.9 1.3E-21 2.9E-26 190.8 19.1 272 61-405 1-288 (296)
22 PRK15059 tartronate semialdehy 99.9 7.6E-21 1.7E-25 184.9 19.1 270 62-405 1-285 (292)
23 TIGR03026 NDP-sugDHase nucleot 99.9 1.6E-20 3.6E-25 191.3 21.1 281 62-407 1-308 (411)
24 PRK11559 garR tartronate semia 99.8 4.1E-20 8.9E-25 180.4 19.3 272 61-406 2-289 (296)
25 TIGR01692 HIBADH 3-hydroxyisob 99.8 2.9E-20 6.2E-25 180.8 17.9 268 66-403 1-287 (288)
26 TIGR01505 tartro_sem_red 2-hyd 99.8 5.4E-20 1.2E-24 179.1 18.3 271 63-405 1-285 (291)
27 PLN02858 fructose-bisphosphate 99.8 5.2E-19 1.1E-23 201.3 22.5 271 61-405 4-293 (1378)
28 COG1004 Ugd Predicted UDP-gluc 99.8 1.5E-18 3.3E-23 169.6 19.3 279 62-408 1-307 (414)
29 PLN02350 phosphogluconate dehy 99.8 2.5E-18 5.5E-23 176.8 20.3 271 58-391 3-295 (493)
30 PRK12490 6-phosphogluconate de 99.8 3.4E-18 7.4E-23 167.1 17.9 255 62-390 1-271 (299)
31 PLN02858 fructose-bisphosphate 99.8 4.7E-18 1E-22 193.5 21.0 274 60-405 323-613 (1378)
32 PRK09599 6-phosphogluconate de 99.8 1E-17 2.3E-22 163.8 19.1 274 62-406 1-291 (301)
33 TIGR00872 gnd_rel 6-phosphoglu 99.8 6.4E-17 1.4E-21 158.0 21.4 275 62-407 1-290 (298)
34 PRK15182 Vi polysaccharide bio 99.7 8.1E-17 1.8E-21 164.1 19.5 278 59-406 4-304 (425)
35 PTZ00142 6-phosphogluconate de 99.7 3E-17 6.5E-22 168.6 16.3 263 61-385 1-282 (470)
36 PRK11064 wecC UDP-N-acetyl-D-m 99.7 1.5E-16 3.3E-21 162.1 19.8 274 59-406 1-306 (415)
37 PLN02353 probable UDP-glucose 99.7 3.9E-16 8.4E-21 160.6 20.8 285 61-406 1-317 (473)
38 PRK15057 UDP-glucose 6-dehydro 99.7 7.5E-16 1.6E-20 155.3 21.2 270 62-405 1-293 (388)
39 PLN02688 pyrroline-5-carboxyla 99.7 1.6E-15 3.5E-20 145.7 22.6 258 62-392 1-259 (266)
40 PF03446 NAD_binding_2: NAD bi 99.7 6.8E-17 1.5E-21 144.0 11.5 152 61-249 1-158 (163)
41 PRK12491 pyrroline-5-carboxyla 99.7 5.8E-15 1.3E-19 142.2 21.7 159 62-253 3-163 (272)
42 PRK07680 late competence prote 99.6 2.4E-14 5.2E-19 138.2 21.4 162 62-255 1-162 (273)
43 PRK07679 pyrroline-5-carboxyla 99.6 5.7E-14 1.2E-18 136.0 23.8 164 59-253 1-165 (279)
44 COG0345 ProC Pyrroline-5-carbo 99.6 1.3E-14 2.8E-19 137.7 18.8 161 61-254 1-161 (266)
45 PRK07634 pyrroline-5-carboxyla 99.6 3.5E-14 7.6E-19 134.7 21.7 163 58-253 1-165 (245)
46 TIGR00873 gnd 6-phosphoglucona 99.6 3.7E-15 8E-20 153.3 15.0 264 63-390 1-284 (467)
47 PRK06928 pyrroline-5-carboxyla 99.6 2.7E-14 6E-19 138.0 20.1 163 61-253 1-163 (277)
48 COG0677 WecC UDP-N-acetyl-D-ma 99.6 1.9E-14 4.2E-19 140.4 15.8 274 62-405 10-311 (436)
49 PRK11880 pyrroline-5-carboxyla 99.6 1.1E-13 2.5E-18 132.9 20.3 156 61-251 2-158 (267)
50 PRK06129 3-hydroxyacyl-CoA deh 99.6 2.8E-13 6.1E-18 133.0 20.7 262 61-390 2-276 (308)
51 PRK08507 prephenate dehydrogen 99.6 1.2E-13 2.5E-18 133.5 17.6 172 62-266 1-181 (275)
52 PTZ00431 pyrroline carboxylate 99.6 1E-12 2.2E-17 125.9 22.7 154 60-253 2-156 (260)
53 PRK07531 bifunctional 3-hydrox 99.5 1.9E-13 4.2E-18 142.4 17.2 202 60-314 3-216 (495)
54 PRK07417 arogenate dehydrogena 99.5 1.4E-13 2.9E-18 133.4 13.6 172 62-266 1-180 (279)
55 PRK12557 H(2)-dependent methyl 99.5 1.6E-13 3.4E-18 136.0 14.2 202 62-313 1-234 (342)
56 PRK06130 3-hydroxybutyryl-CoA 99.5 3.6E-13 7.9E-18 132.4 16.5 201 60-313 3-214 (311)
57 TIGR01915 npdG NADPH-dependent 99.5 7.4E-13 1.6E-17 123.7 17.3 175 62-254 1-190 (219)
58 PRK08655 prephenate dehydrogen 99.5 1.8E-12 3.9E-17 132.9 21.2 212 62-309 1-222 (437)
59 PRK07502 cyclohexadienyl dehyd 99.5 1.6E-12 3.4E-17 127.7 18.5 182 58-269 3-198 (307)
60 PRK06545 prephenate dehydrogen 99.5 1.6E-12 3.4E-17 130.4 17.5 206 62-299 1-221 (359)
61 COG0287 TyrA Prephenate dehydr 99.5 3E-12 6.5E-17 123.2 18.2 210 60-299 2-221 (279)
62 PF02558 ApbA: Ketopantoate re 99.4 1.6E-13 3.4E-18 120.4 7.2 114 64-200 1-115 (151)
63 PF03807 F420_oxidored: NADP o 99.4 3E-13 6.5E-18 109.4 7.6 94 63-180 1-96 (96)
64 PLN02256 arogenate dehydrogena 99.4 5E-12 1.1E-16 123.6 17.4 207 58-308 33-255 (304)
65 PRK08293 3-hydroxybutyryl-CoA 99.4 3.1E-12 6.7E-17 124.4 15.6 199 60-312 2-218 (287)
66 PRK05808 3-hydroxybutyryl-CoA 99.4 4.3E-12 9.3E-17 123.1 16.3 205 60-311 2-214 (282)
67 PRK06035 3-hydroxyacyl-CoA deh 99.4 1.7E-12 3.7E-17 126.5 13.3 204 60-311 2-217 (291)
68 PRK09260 3-hydroxybutyryl-CoA 99.4 5.5E-12 1.2E-16 122.7 15.3 167 61-255 1-184 (288)
69 PRK09287 6-phosphogluconate de 99.4 2.5E-12 5.5E-17 131.9 12.9 254 72-390 1-277 (459)
70 PF03721 UDPG_MGDP_dh_N: UDP-g 99.4 3.7E-12 8E-17 115.7 12.1 160 62-240 1-185 (185)
71 PRK07530 3-hydroxybutyryl-CoA 99.4 9.3E-12 2E-16 121.3 15.4 168 59-254 2-185 (292)
72 PLN02545 3-hydroxybutyryl-CoA 99.4 1.8E-11 4E-16 119.4 16.7 173 59-254 2-185 (295)
73 PRK06476 pyrroline-5-carboxyla 99.3 6.9E-11 1.5E-15 113.1 18.6 190 62-313 1-191 (258)
74 PRK07066 3-hydroxybutyryl-CoA 99.3 5.2E-11 1.1E-15 117.0 17.7 169 60-256 6-188 (321)
75 COG2085 Predicted dinucleotide 99.3 2.6E-11 5.6E-16 110.2 13.9 165 61-253 1-180 (211)
76 PRK11199 tyrA bifunctional cho 99.3 9E-11 2E-15 118.2 18.9 162 60-273 97-265 (374)
77 TIGR00465 ilvC ketol-acid redu 99.3 1.4E-10 3.1E-15 113.7 18.4 150 61-247 3-161 (314)
78 PF02737 3HCDH_N: 3-hydroxyacy 99.3 5E-11 1.1E-15 107.9 12.9 166 63-253 1-179 (180)
79 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.3 5.2E-11 1.1E-15 124.0 14.3 172 59-255 3-187 (503)
80 PRK05479 ketol-acid reductoiso 99.3 4.4E-10 9.5E-15 110.3 19.3 150 61-247 17-175 (330)
81 PRK07819 3-hydroxybutyryl-CoA 99.2 1.6E-10 3.5E-15 112.3 15.1 191 61-301 5-210 (286)
82 PRK08268 3-hydroxy-acyl-CoA de 99.2 3E-10 6.4E-15 118.6 17.4 171 60-255 6-189 (507)
83 PRK14806 bifunctional cyclohex 99.2 5.4E-10 1.2E-14 122.4 17.9 168 61-258 3-182 (735)
84 COG1023 Gnd Predicted 6-phosph 99.2 7.9E-10 1.7E-14 101.4 15.7 274 62-405 1-285 (300)
85 PLN02712 arogenate dehydrogena 99.2 9.8E-10 2.1E-14 118.0 18.6 178 58-272 49-242 (667)
86 PF10727 Rossmann-like: Rossma 99.2 1.5E-11 3.3E-16 104.4 3.7 99 58-182 7-108 (127)
87 PLN02712 arogenate dehydrogena 99.1 1.9E-09 4.1E-14 115.8 17.9 204 59-303 367-584 (667)
88 PRK08818 prephenate dehydrogen 99.1 3.5E-09 7.6E-14 105.8 16.8 162 60-270 3-175 (370)
89 TIGR01724 hmd_rel H2-forming N 99.1 5.5E-09 1.2E-13 100.7 17.4 156 62-251 1-192 (341)
90 TIGR00112 proC pyrroline-5-car 99.0 1.3E-08 2.8E-13 96.8 18.1 134 92-254 10-144 (245)
91 PRK11730 fadB multifunctional 99.0 8.9E-09 1.9E-13 111.9 15.1 175 60-257 312-497 (715)
92 COG1250 FadB 3-hydroxyacyl-CoA 99.0 1.3E-08 2.7E-13 98.9 14.2 172 60-254 2-184 (307)
93 TIGR02440 FadJ fatty oxidation 98.9 1.8E-08 3.9E-13 109.2 15.3 175 60-259 303-491 (699)
94 PRK02318 mannitol-1-phosphate 98.9 1.4E-09 3E-14 110.0 5.9 223 62-311 1-269 (381)
95 TIGR02437 FadB fatty oxidation 98.9 2.1E-08 4.6E-13 108.8 15.2 174 59-257 311-497 (714)
96 PRK11154 fadJ multifunctional 98.9 2.2E-08 4.8E-13 108.8 14.5 174 60-256 308-493 (708)
97 TIGR02441 fa_ox_alpha_mit fatt 98.9 1.6E-08 3.4E-13 110.1 12.7 173 59-256 333-518 (737)
98 COG0362 Gnd 6-phosphogluconate 98.9 6.8E-08 1.5E-12 94.7 15.5 210 60-311 2-215 (473)
99 PF02153 PDH: Prephenate dehyd 98.8 4.3E-08 9.3E-13 93.9 13.0 166 76-272 1-180 (258)
100 PF08546 ApbA_C: Ketopantoate 98.8 5.6E-08 1.2E-12 82.5 11.1 119 253-392 1-123 (125)
101 KOG2380 Prephenate dehydrogena 98.8 8.6E-08 1.9E-12 92.1 13.0 199 12-250 7-217 (480)
102 KOG3124 Pyrroline-5-carboxylat 98.7 1.9E-07 4.2E-12 86.9 13.3 162 62-255 1-163 (267)
103 PF07991 IlvN: Acetohydroxy ac 98.7 7.3E-08 1.6E-12 84.3 10.0 94 61-182 4-98 (165)
104 PRK12480 D-lactate dehydrogena 98.7 9.8E-08 2.1E-12 94.6 11.3 94 60-184 145-240 (330)
105 PRK13403 ketol-acid reductoiso 98.7 1.5E-07 3.3E-12 91.5 10.9 95 60-183 15-110 (335)
106 PRK08269 3-hydroxybutyryl-CoA 98.6 9.8E-07 2.1E-11 86.9 14.8 193 72-313 1-213 (314)
107 PRK08605 D-lactate dehydrogena 98.5 5.5E-07 1.2E-11 89.4 10.2 95 60-184 145-242 (332)
108 KOG2666 UDP-glucose/GDP-mannos 98.5 4.3E-06 9.2E-11 79.9 14.5 217 61-302 1-251 (481)
109 PRK07574 formate dehydrogenase 98.5 1.2E-06 2.5E-11 88.3 11.3 97 60-183 191-289 (385)
110 PRK06444 prephenate dehydrogen 98.5 2.1E-06 4.7E-11 78.6 12.1 166 62-310 1-171 (197)
111 PRK06223 malate dehydrogenase; 98.5 1.5E-06 3.1E-11 85.4 11.8 105 61-182 2-123 (307)
112 PRK13243 glyoxylate reductase; 98.4 1.2E-06 2.5E-11 87.1 10.3 96 60-184 149-246 (333)
113 PLN03139 formate dehydrogenase 98.4 1.5E-06 3.3E-11 87.5 10.9 99 59-184 197-297 (386)
114 TIGR01763 MalateDH_bact malate 98.4 2.5E-06 5.5E-11 83.6 11.6 104 62-182 2-122 (305)
115 PRK15469 ghrA bifunctional gly 98.4 2.1E-06 4.6E-11 84.4 9.9 96 60-184 135-232 (312)
116 PRK13302 putative L-aspartate 98.3 2.9E-06 6.4E-11 81.8 10.1 92 58-178 3-98 (271)
117 PF02826 2-Hacid_dh_C: D-isome 98.3 1.7E-06 3.7E-11 78.2 7.7 98 59-184 34-133 (178)
118 KOG2653 6-phosphogluconate deh 98.3 4.5E-06 9.8E-11 80.8 10.8 156 58-243 3-162 (487)
119 PRK06436 glycerate dehydrogena 98.3 4.7E-06 1E-10 81.5 9.9 94 59-184 120-215 (303)
120 PRK13304 L-aspartate dehydroge 98.3 3.8E-06 8.2E-11 80.8 9.0 82 61-166 1-83 (265)
121 PTZ00082 L-lactate dehydrogena 98.2 7.8E-06 1.7E-10 80.7 11.1 110 57-182 2-132 (321)
122 KOG2304 3-hydroxyacyl-CoA dehy 98.2 8.2E-07 1.8E-11 81.1 3.6 116 59-183 9-137 (298)
123 cd05297 GH4_alpha_glucosidase_ 98.2 2.1E-06 4.5E-11 88.0 6.7 78 62-154 1-84 (423)
124 cd01065 NAD_bind_Shikimate_DH 98.2 1.9E-06 4E-11 75.6 4.9 98 60-179 18-117 (155)
125 COG4007 Predicted dehydrogenas 98.2 1.8E-05 3.9E-10 73.7 10.8 157 61-252 1-194 (340)
126 TIGR01327 PGDH D-3-phosphoglyc 98.1 8.3E-06 1.8E-10 85.9 9.6 97 60-184 137-235 (525)
127 PTZ00117 malate dehydrogenase; 98.1 1.8E-05 3.9E-10 78.2 11.2 107 60-182 4-126 (319)
128 PRK13581 D-3-phosphoglycerate 98.1 9.2E-06 2E-10 85.6 9.5 96 60-184 139-236 (526)
129 PRK06141 ornithine cyclodeamin 98.1 7.8E-06 1.7E-10 80.6 7.9 94 60-177 124-218 (314)
130 TIGR02853 spore_dpaA dipicolin 98.1 8.1E-06 1.8E-10 79.4 7.9 92 60-179 150-241 (287)
131 cd05213 NAD_bind_Glutamyl_tRNA 98.1 1.8E-05 3.9E-10 77.9 9.9 98 60-181 177-276 (311)
132 PF00056 Ldh_1_N: lactate/mala 98.0 1.7E-05 3.8E-10 68.8 7.9 116 62-200 1-133 (141)
133 COG0111 SerA Phosphoglycerate 98.0 2E-05 4.3E-10 77.8 9.0 96 61-184 142-239 (324)
134 PF01113 DapB_N: Dihydrodipico 98.0 5E-05 1.1E-09 64.4 10.0 120 62-210 1-123 (124)
135 PLN02928 oxidoreductase family 98.0 3E-05 6.5E-10 77.5 9.9 109 60-184 158-268 (347)
136 PRK14194 bifunctional 5,10-met 98.0 2E-05 4.3E-10 76.5 8.1 71 61-178 159-231 (301)
137 PRK00257 erythronate-4-phospha 98.0 2.5E-05 5.4E-10 78.7 8.6 93 60-184 115-213 (381)
138 cd05291 HicDH_like L-2-hydroxy 98.0 6.2E-05 1.3E-09 73.9 11.2 104 62-182 1-121 (306)
139 cd01339 LDH-like_MDH L-lactate 98.0 4.2E-05 9.1E-10 74.9 9.9 102 64-182 1-119 (300)
140 PRK15438 erythronate-4-phospha 98.0 2.2E-05 4.7E-10 79.0 7.9 95 58-184 113-213 (378)
141 PRK08306 dipicolinate synthase 97.9 4.6E-05 9.9E-10 74.5 9.6 92 60-179 151-242 (296)
142 cd05293 LDH_1 A subgroup of L- 97.9 9.1E-05 2E-09 72.9 11.4 106 61-182 3-124 (312)
143 cd00650 LDH_MDH_like NAD-depen 97.9 7.5E-05 1.6E-09 71.7 10.0 106 64-182 1-123 (263)
144 PF01488 Shikimate_DH: Shikima 97.9 2.8E-05 6E-10 67.0 6.0 99 59-178 10-109 (135)
145 PF01408 GFO_IDH_MocA: Oxidore 97.8 6.1E-05 1.3E-09 62.9 7.7 94 62-183 1-97 (120)
146 PRK15409 bifunctional glyoxyla 97.8 8.8E-05 1.9E-09 73.4 10.0 96 60-184 144-242 (323)
147 COG1052 LdhA Lactate dehydroge 97.8 0.00011 2.3E-09 72.6 10.5 97 59-184 144-242 (324)
148 PRK11790 D-3-phosphoglycerate 97.8 9.4E-05 2E-09 75.5 10.3 94 60-184 150-245 (409)
149 cd05292 LDH_2 A subgroup of L- 97.8 0.00015 3.2E-09 71.3 11.3 102 62-180 1-118 (308)
150 PRK00066 ldh L-lactate dehydro 97.8 0.00019 4.2E-09 70.7 12.0 105 60-181 5-125 (315)
151 PRK05225 ketol-acid reductoiso 97.8 4.8E-05 1E-09 77.1 7.3 99 61-182 36-134 (487)
152 PRK05442 malate dehydrogenase; 97.8 0.00015 3.2E-09 71.8 10.5 114 59-182 2-134 (326)
153 KOG2305 3-hydroxyacyl-CoA dehy 97.8 2.8E-05 6.1E-10 71.2 4.7 114 61-182 3-124 (313)
154 cd01338 MDH_choloroplast_like 97.8 0.00019 4.2E-09 70.9 10.7 112 61-182 2-132 (322)
155 PF10100 DUF2338: Uncharacteri 97.7 0.0024 5.3E-08 63.6 17.9 230 61-303 1-270 (429)
156 PF01118 Semialdhyde_dh: Semia 97.7 0.00029 6.4E-09 59.3 10.0 98 63-182 1-101 (121)
157 PRK08410 2-hydroxyacid dehydro 97.7 0.00011 2.3E-09 72.4 8.5 94 59-184 143-238 (311)
158 smart00859 Semialdhyde_dh Semi 97.7 0.00012 2.6E-09 61.7 7.5 99 63-182 1-103 (122)
159 PRK14188 bifunctional 5,10-met 97.7 0.0001 2.2E-09 71.7 7.7 72 59-178 156-230 (296)
160 TIGR02371 ala_DH_arch alanine 97.7 9.7E-05 2.1E-09 73.2 7.6 96 60-178 127-222 (325)
161 PRK06487 glycerate dehydrogena 97.7 0.00014 3E-09 71.8 8.7 91 60-184 147-239 (317)
162 COG0569 TrkA K+ transport syst 97.7 0.0001 2.2E-09 69.1 7.4 94 62-179 1-102 (225)
163 COG0059 IlvC Ketol-acid reduct 97.7 0.0002 4.4E-09 68.5 9.3 95 61-183 18-113 (338)
164 PRK07340 ornithine cyclodeamin 97.7 0.00014 3E-09 71.4 8.5 93 60-178 124-217 (304)
165 cd05294 LDH-like_MDH_nadp A la 97.7 0.00035 7.7E-09 68.7 11.3 104 62-182 1-125 (309)
166 PRK08618 ornithine cyclodeamin 97.7 0.00016 3.4E-09 71.7 8.7 93 61-177 127-220 (325)
167 PRK15076 alpha-galactosidase; 97.7 5.9E-05 1.3E-09 77.4 5.8 81 61-154 1-85 (431)
168 cd00300 LDH_like L-lactate deh 97.7 0.00029 6.3E-09 69.0 10.3 103 64-182 1-119 (300)
169 COG1748 LYS9 Saccharopine dehy 97.7 0.00014 3E-09 73.0 8.0 87 61-164 1-88 (389)
170 PRK06932 glycerate dehydrogena 97.7 0.00017 3.6E-09 71.1 8.5 92 60-184 146-239 (314)
171 PLN02602 lactate dehydrogenase 97.6 0.00058 1.3E-08 68.2 12.2 105 62-182 38-158 (350)
172 PRK00048 dihydrodipicolinate r 97.6 0.00032 6.9E-09 67.2 10.0 94 61-183 1-96 (257)
173 TIGR01759 MalateDH-SF1 malate 97.6 0.00034 7.4E-09 69.1 10.4 113 60-182 2-133 (323)
174 PLN02306 hydroxypyruvate reduc 97.6 0.00034 7.3E-09 70.8 10.3 112 60-184 164-278 (386)
175 PRK13303 L-aspartate dehydroge 97.6 0.00057 1.2E-08 65.7 10.5 93 61-180 1-94 (265)
176 KOG0069 Glyoxylate/hydroxypyru 97.5 0.00061 1.3E-08 67.0 10.6 97 60-184 161-259 (336)
177 PF14833 NAD_binding_11: NAD-b 97.5 0.00018 3.9E-09 60.7 6.1 107 277-403 6-122 (122)
178 PRK07589 ornithine cyclodeamin 97.5 0.00025 5.5E-09 70.6 8.0 97 60-177 128-224 (346)
179 PLN00203 glutamyl-tRNA reducta 97.5 0.00036 7.8E-09 73.1 9.4 101 59-179 264-370 (519)
180 PRK00045 hemA glutamyl-tRNA re 97.5 0.00024 5.2E-09 73.0 7.8 97 59-179 180-281 (423)
181 PRK00436 argC N-acetyl-gamma-g 97.5 0.0018 4E-08 64.6 13.8 101 61-183 2-104 (343)
182 COG0039 Mdh Malate/lactate deh 97.5 0.00081 1.8E-08 65.7 10.7 104 62-182 1-122 (313)
183 cd01337 MDH_glyoxysomal_mitoch 97.5 0.00088 1.9E-08 65.8 11.1 101 62-182 1-121 (310)
184 PRK06823 ornithine cyclodeamin 97.5 0.00038 8.3E-09 68.6 8.6 96 60-178 127-222 (315)
185 cd00704 MDH Malate dehydrogena 97.5 0.00063 1.4E-08 67.3 10.0 109 62-182 1-130 (323)
186 PTZ00325 malate dehydrogenase; 97.5 0.0008 1.7E-08 66.4 10.7 106 58-183 5-130 (321)
187 PRK14179 bifunctional 5,10-met 97.5 0.00034 7.3E-09 67.5 7.6 71 61-178 158-230 (284)
188 cd01075 NAD_bind_Leu_Phe_Val_D 97.4 0.00057 1.2E-08 62.9 8.5 89 59-180 26-117 (200)
189 COG1712 Predicted dinucleotide 97.4 0.00066 1.4E-08 62.5 8.6 92 62-177 1-92 (255)
190 cd05290 LDH_3 A subgroup of L- 97.4 0.00087 1.9E-08 65.8 10.2 104 63-182 1-123 (307)
191 TIGR00036 dapB dihydrodipicoli 97.4 0.0021 4.5E-08 61.9 12.7 102 61-183 1-104 (266)
192 PRK08291 ectoine utilization p 97.4 0.00041 8.9E-09 68.9 7.6 76 61-155 132-208 (330)
193 cd01336 MDH_cytoplasmic_cytoso 97.4 0.0012 2.7E-08 65.3 11.0 112 61-182 2-132 (325)
194 TIGR01035 hemA glutamyl-tRNA r 97.4 0.00078 1.7E-08 69.0 9.5 97 59-179 178-278 (417)
195 COG2423 Predicted ornithine cy 97.4 0.00049 1.1E-08 67.9 7.4 95 62-178 131-225 (330)
196 TIGR02992 ectoine_eutC ectoine 97.4 0.00059 1.3E-08 67.7 8.1 94 61-177 129-223 (326)
197 PRK04148 hypothetical protein; 97.3 0.00088 1.9E-08 57.3 7.8 96 61-179 17-112 (134)
198 PRK06046 alanine dehydrogenase 97.3 0.00063 1.4E-08 67.5 7.9 95 60-177 128-222 (326)
199 PLN00112 malate dehydrogenase 97.3 0.0015 3.4E-08 66.9 10.8 112 61-182 100-230 (444)
200 TIGR02354 thiF_fam2 thiamine b 97.3 0.0009 1.9E-08 61.6 8.3 35 60-100 20-54 (200)
201 TIGR01772 MDH_euk_gproteo mala 97.3 0.001 2.3E-08 65.4 9.2 100 63-182 1-120 (312)
202 PRK09496 trkA potassium transp 97.3 0.00053 1.2E-08 70.8 7.5 94 62-175 1-97 (453)
203 PTZ00075 Adenosylhomocysteinas 97.3 0.00089 1.9E-08 68.9 8.9 90 60-180 253-343 (476)
204 PRK12549 shikimate 5-dehydroge 97.3 0.00065 1.4E-08 66.0 7.5 100 61-178 127-227 (284)
205 TIGR00507 aroE shikimate 5-deh 97.3 0.00067 1.5E-08 65.4 7.4 96 61-179 117-215 (270)
206 TIGR00936 ahcY adenosylhomocys 97.3 0.002 4.4E-08 65.4 11.1 88 61-179 195-283 (406)
207 COG0373 HemA Glutamyl-tRNA red 97.3 0.00048 1E-08 69.6 6.4 72 59-154 176-248 (414)
208 PRK05476 S-adenosyl-L-homocyst 97.3 0.0017 3.7E-08 66.3 10.3 88 60-178 211-299 (425)
209 PF02423 OCD_Mu_crystall: Orni 97.2 0.00069 1.5E-08 66.8 7.1 97 60-178 127-224 (313)
210 PRK05086 malate dehydrogenase; 97.2 0.0029 6.3E-08 62.3 11.4 102 62-182 1-122 (312)
211 PRK13940 glutamyl-tRNA reducta 97.2 0.00064 1.4E-08 69.4 6.9 75 59-155 179-253 (414)
212 PRK06407 ornithine cyclodeamin 97.2 0.00091 2E-08 65.5 7.7 96 60-177 116-211 (301)
213 TIGR01850 argC N-acetyl-gamma- 97.2 0.0053 1.1E-07 61.4 13.1 100 62-182 1-103 (346)
214 TIGR01757 Malate-DH_plant mala 97.2 0.0021 4.6E-08 64.9 10.1 112 61-182 44-174 (387)
215 cd01078 NAD_bind_H4MPT_DH NADP 97.2 0.00071 1.5E-08 61.8 6.2 97 60-178 27-129 (194)
216 TIGR00518 alaDH alanine dehydr 97.2 0.00092 2E-08 67.4 7.3 99 60-178 166-267 (370)
217 PLN00106 malate dehydrogenase 97.2 0.0026 5.7E-08 62.8 10.1 102 61-182 18-139 (323)
218 PRK08300 acetaldehyde dehydrog 97.1 0.0043 9.4E-08 60.4 11.3 95 59-179 2-102 (302)
219 cd00401 AdoHcyase S-adenosyl-L 97.1 0.0032 7E-08 64.1 10.8 86 62-178 203-289 (413)
220 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0018 3.9E-08 57.9 7.8 75 59-179 42-117 (168)
221 PF00670 AdoHcyase_NAD: S-aden 97.1 0.0013 2.8E-08 58.1 6.5 85 62-178 24-110 (162)
222 TIGR01921 DAP-DH diaminopimela 97.1 0.002 4.2E-08 63.4 8.5 70 60-156 2-72 (324)
223 TIGR01758 MDH_euk_cyt malate d 97.1 0.0026 5.7E-08 62.9 9.4 110 63-182 1-129 (324)
224 PRK11861 bifunctional prephena 97.1 0.0027 5.8E-08 69.1 10.1 118 148-272 1-133 (673)
225 PRK13301 putative L-aspartate 97.0 0.0035 7.7E-08 59.7 9.4 89 62-178 3-93 (267)
226 PLN02494 adenosylhomocysteinas 97.0 0.004 8.7E-08 64.0 10.1 89 61-179 254-342 (477)
227 COG4408 Uncharacterized protei 97.0 0.011 2.4E-07 57.3 12.3 230 59-303 2-272 (431)
228 PRK12475 thiamine/molybdopteri 97.0 0.0055 1.2E-07 61.0 10.7 35 61-101 24-58 (338)
229 PRK14874 aspartate-semialdehyd 97.0 0.0029 6.2E-08 63.0 8.7 95 61-180 1-96 (334)
230 PRK06199 ornithine cyclodeamin 97.0 0.0023 5.1E-08 64.6 8.1 99 61-176 155-257 (379)
231 PLN02968 Probable N-acetyl-gam 97.0 0.0036 7.8E-08 63.3 9.3 101 59-181 36-137 (381)
232 cd01487 E1_ThiF_like E1_ThiF_l 97.0 0.0041 8.9E-08 55.9 8.6 33 63-101 1-33 (174)
233 PRK00258 aroE shikimate 5-dehy 96.9 0.0024 5.1E-08 61.9 7.2 98 60-178 122-221 (278)
234 TIGR02356 adenyl_thiF thiazole 96.9 0.0027 5.9E-08 58.5 6.9 35 61-101 21-55 (202)
235 TIGR01809 Shik-DH-AROM shikima 96.9 0.0026 5.6E-08 61.8 6.9 74 61-155 125-201 (282)
236 PRK05671 aspartate-semialdehyd 96.9 0.0057 1.2E-07 60.8 9.4 97 59-181 2-100 (336)
237 TIGR01771 L-LDH-NAD L-lactate 96.8 0.0089 1.9E-07 58.5 10.6 100 66-182 1-117 (299)
238 COG2910 Putative NADH-flavin r 96.8 0.0035 7.7E-08 56.1 6.8 35 62-103 1-36 (211)
239 PLN02819 lysine-ketoglutarate 96.8 0.0063 1.4E-07 68.5 10.5 93 57-164 565-668 (1042)
240 PRK04207 glyceraldehyde-3-phos 96.8 0.011 2.3E-07 59.1 11.1 102 61-177 1-108 (341)
241 cd05311 NAD_bind_2_malic_enz N 96.8 0.0074 1.6E-07 56.6 9.4 95 62-180 26-130 (226)
242 COG0673 MviM Predicted dehydro 96.8 0.0056 1.2E-07 60.5 8.9 99 59-183 1-102 (342)
243 PRK06718 precorrin-2 dehydroge 96.8 0.0098 2.1E-07 54.8 9.7 84 59-165 8-91 (202)
244 PF13460 NAD_binding_10: NADH( 96.8 0.0047 1E-07 55.2 7.4 96 64-182 1-102 (183)
245 COG0002 ArgC Acetylglutamate s 96.7 0.0064 1.4E-07 59.7 8.6 157 60-243 1-167 (349)
246 KOG1495 Lactate dehydrogenase 96.7 0.014 3E-07 55.3 10.2 108 61-183 20-142 (332)
247 PRK06719 precorrin-2 dehydroge 96.7 0.0094 2E-07 52.7 8.8 82 59-166 11-92 (157)
248 cd05298 GH4_GlvA_pagL_like Gly 96.6 0.0045 9.8E-08 63.7 6.6 81 62-154 1-84 (437)
249 TIGR03215 ac_ald_DH_ac acetald 96.6 0.025 5.4E-07 54.9 11.3 92 61-178 1-95 (285)
250 PRK09496 trkA potassium transp 96.5 0.013 2.8E-07 60.5 9.9 96 60-176 230-329 (453)
251 cd05197 GH4_glycoside_hydrolas 96.5 0.0047 1E-07 63.3 6.5 80 62-154 1-84 (425)
252 PF02254 TrkA_N: TrkA-N domain 96.5 0.0059 1.3E-07 50.5 6.0 72 64-158 1-76 (116)
253 PF13380 CoA_binding_2: CoA bi 96.5 0.0095 2.1E-07 49.8 7.0 74 62-167 1-78 (116)
254 PRK11579 putative oxidoreducta 96.5 0.017 3.6E-07 57.7 9.8 92 61-183 4-99 (346)
255 PRK08644 thiamine biosynthesis 96.4 0.012 2.6E-07 54.6 8.0 34 61-100 28-61 (212)
256 PRK09310 aroDE bifunctional 3- 96.4 0.0059 1.3E-07 63.7 6.5 71 60-155 331-401 (477)
257 PRK14175 bifunctional 5,10-met 96.4 0.011 2.4E-07 57.2 7.7 73 60-178 157-230 (286)
258 cd01483 E1_enzyme_family Super 96.4 0.018 3.9E-07 49.7 8.3 33 63-101 1-33 (143)
259 PLN02383 aspartate semialdehyd 96.4 0.019 4E-07 57.4 9.3 95 61-181 7-103 (344)
260 PRK03659 glutathione-regulated 96.3 0.0072 1.6E-07 64.9 6.7 93 61-177 400-497 (601)
261 PRK10669 putative cation:proto 96.3 0.0086 1.9E-07 63.8 7.3 94 61-178 417-515 (558)
262 PRK08040 putative semialdehyde 96.3 0.019 4.1E-07 57.1 8.7 97 59-181 2-100 (336)
263 PF03435 Saccharop_dh: Sacchar 96.2 0.0052 1.1E-07 62.2 4.8 79 64-163 1-86 (386)
264 TIGR02717 AcCoA-syn-alpha acet 96.2 0.025 5.4E-07 58.6 9.8 91 59-183 5-101 (447)
265 PRK11863 N-acetyl-gamma-glutam 96.2 0.029 6.3E-07 55.1 9.6 81 61-180 2-83 (313)
266 cd05296 GH4_P_beta_glucosidase 96.2 0.012 2.6E-07 60.2 7.3 81 62-154 1-85 (419)
267 cd00757 ThiF_MoeB_HesA_family 96.2 0.016 3.4E-07 54.5 7.3 35 61-101 21-55 (228)
268 cd01486 Apg7 Apg7 is an E1-lik 96.2 0.023 5E-07 55.2 8.5 110 63-180 1-142 (307)
269 PRK07688 thiamine/molybdopteri 96.1 0.018 3.9E-07 57.4 7.9 35 61-101 24-58 (339)
270 TIGR00561 pntA NAD(P) transhyd 96.1 0.029 6.2E-07 58.7 9.3 103 61-178 164-284 (511)
271 cd01492 Aos1_SUMO Ubiquitin ac 96.0 0.051 1.1E-06 49.8 9.9 35 61-101 21-55 (197)
272 PRK08664 aspartate-semialdehyd 96.0 0.037 8.1E-07 55.4 9.7 105 60-179 2-108 (349)
273 COG0289 DapB Dihydrodipicolina 96.0 0.067 1.4E-06 50.8 10.6 149 60-250 1-151 (266)
274 PRK00683 murD UDP-N-acetylmura 96.0 0.018 3.9E-07 59.1 7.5 37 60-103 2-38 (418)
275 CHL00194 ycf39 Ycf39; Provisio 96.0 0.013 2.9E-07 57.5 6.2 73 62-154 1-74 (317)
276 PF02056 Glyco_hydro_4: Family 96.0 0.0082 1.8E-07 54.3 4.3 80 63-155 1-84 (183)
277 PRK08328 hypothetical protein; 96.0 0.037 8E-07 52.1 8.9 35 61-101 27-61 (231)
278 PRK14189 bifunctional 5,10-met 95.9 0.024 5.2E-07 54.8 7.1 72 61-178 158-230 (285)
279 cd01485 E1-1_like Ubiquitin ac 95.9 0.074 1.6E-06 48.8 10.1 35 61-101 19-53 (198)
280 TIGR00978 asd_EA aspartate-sem 95.9 0.045 9.8E-07 54.6 9.4 100 62-179 1-105 (341)
281 PRK14106 murD UDP-N-acetylmura 95.8 0.035 7.7E-07 57.3 8.9 75 60-154 4-78 (450)
282 PRK03562 glutathione-regulated 95.8 0.018 3.8E-07 62.2 6.8 92 61-176 400-496 (621)
283 PRK12548 shikimate 5-dehydroge 95.8 0.037 7.9E-07 53.9 8.3 104 60-178 125-236 (289)
284 COG0169 AroE Shikimate 5-dehyd 95.8 0.024 5.1E-07 54.9 6.8 98 60-178 125-226 (283)
285 PF02629 CoA_binding: CoA bind 95.8 0.11 2.4E-06 41.7 9.6 78 61-166 3-84 (96)
286 PRK06728 aspartate-semialdehyd 95.8 0.036 7.8E-07 55.2 8.1 93 62-181 6-102 (347)
287 PF00070 Pyr_redox: Pyridine n 95.7 0.024 5.1E-07 43.8 5.4 34 63-103 1-34 (80)
288 PRK14192 bifunctional 5,10-met 95.7 0.035 7.6E-07 53.9 7.7 72 61-178 159-231 (283)
289 TIGR01296 asd_B aspartate-semi 95.7 0.035 7.7E-07 55.3 7.9 91 63-179 1-93 (339)
290 TIGR02355 moeB molybdopterin s 95.7 0.029 6.3E-07 53.1 7.0 35 61-101 24-58 (240)
291 PF01262 AlaDh_PNT_C: Alanine 95.7 0.0096 2.1E-07 53.1 3.4 108 58-178 17-139 (168)
292 COG1064 AdhP Zn-dependent alco 95.7 0.068 1.5E-06 52.9 9.5 81 62-165 168-250 (339)
293 PRK12749 quinate/shikimate deh 95.6 0.048 1E-06 53.1 8.3 99 62-178 125-233 (288)
294 PRK06349 homoserine dehydrogen 95.6 0.03 6.6E-07 57.6 7.1 100 60-181 2-107 (426)
295 TIGR01470 cysG_Nterm siroheme 95.6 0.11 2.3E-06 48.1 10.0 77 60-159 8-84 (205)
296 PRK05600 thiamine biosynthesis 95.5 0.075 1.6E-06 53.6 9.5 93 62-166 42-153 (370)
297 PRK06598 aspartate-semialdehyd 95.5 0.052 1.1E-06 54.5 8.2 94 61-181 1-101 (369)
298 TIGR01851 argC_other N-acetyl- 95.5 0.085 1.8E-06 51.7 9.5 79 62-179 2-81 (310)
299 PRK09424 pntA NAD(P) transhydr 95.5 0.063 1.4E-06 56.2 9.1 105 61-178 165-285 (509)
300 PRK12409 D-amino acid dehydrog 95.5 0.019 4.2E-07 58.4 5.2 34 61-101 1-34 (410)
301 PF13241 NAD_binding_7: Putati 95.4 0.019 4.1E-07 46.9 4.1 79 58-166 4-82 (103)
302 PRK00676 hemA glutamyl-tRNA re 95.4 0.053 1.2E-06 53.7 7.8 39 58-102 171-209 (338)
303 PRK05597 molybdopterin biosynt 95.4 0.081 1.7E-06 53.1 9.3 94 61-166 28-140 (355)
304 PRK05690 molybdopterin biosynt 95.3 0.065 1.4E-06 50.9 7.9 35 61-101 32-66 (245)
305 COG2344 AT-rich DNA-binding pr 95.3 0.047 1E-06 49.1 6.4 83 58-166 81-168 (211)
306 PRK08762 molybdopterin biosynt 95.3 0.059 1.3E-06 54.5 8.0 33 62-100 136-168 (376)
307 PRK05472 redox-sensing transcr 95.3 0.023 4.9E-07 52.8 4.7 79 61-165 84-167 (213)
308 COG0686 Ald Alanine dehydrogen 95.3 0.035 7.6E-07 53.8 5.9 103 56-178 163-268 (371)
309 PRK10206 putative oxidoreducta 95.3 0.053 1.1E-06 54.1 7.5 79 61-165 1-85 (344)
310 cd05212 NAD_bind_m-THF_DH_Cycl 95.3 0.095 2.1E-06 45.4 8.0 72 61-178 28-100 (140)
311 PRK06153 hypothetical protein; 95.2 0.038 8.3E-07 55.5 6.2 109 62-182 177-302 (393)
312 PRK07236 hypothetical protein; 95.2 0.031 6.7E-07 56.5 5.7 38 58-102 3-40 (386)
313 PF05368 NmrA: NmrA-like famil 95.2 0.028 6.1E-07 52.4 4.9 73 64-154 1-74 (233)
314 PRK14982 acyl-ACP reductase; P 95.2 0.046 9.9E-07 54.3 6.6 92 59-178 153-246 (340)
315 PRK06392 homoserine dehydrogen 95.2 0.028 6E-07 55.7 4.9 106 62-182 1-120 (326)
316 PRK14027 quinate/shikimate deh 95.1 0.058 1.3E-06 52.4 7.1 76 61-154 127-204 (283)
317 PRK10792 bifunctional 5,10-met 95.1 0.074 1.6E-06 51.4 7.6 72 61-178 159-231 (285)
318 COG1486 CelF Alpha-galactosida 95.1 0.033 7.1E-07 56.7 5.2 84 59-154 1-87 (442)
319 cd05191 NAD_bind_amino_acid_DH 95.0 0.052 1.1E-06 42.6 5.3 35 59-99 21-55 (86)
320 PRK08223 hypothetical protein; 95.0 0.18 3.8E-06 49.0 10.0 35 61-101 27-61 (287)
321 PRK06270 homoserine dehydrogen 95.0 0.12 2.6E-06 51.6 9.0 108 61-180 2-127 (341)
322 PF00899 ThiF: ThiF family; I 95.0 0.041 9E-07 47.0 5.0 35 61-101 2-36 (135)
323 PF02882 THF_DHG_CYH_C: Tetrah 95.0 0.11 2.3E-06 46.1 7.7 92 20-178 16-108 (160)
324 PRK12809 putative oxidoreducta 95.0 0.072 1.6E-06 57.8 7.9 36 60-102 309-344 (639)
325 PRK01710 murD UDP-N-acetylmura 95.0 0.1 2.2E-06 54.3 8.7 35 61-102 14-48 (458)
326 PRK00711 D-amino acid dehydrog 94.9 0.037 8.1E-07 56.3 5.1 34 62-102 1-34 (416)
327 PRK08163 salicylate hydroxylas 94.8 0.042 9.1E-07 55.5 5.3 35 61-102 4-38 (396)
328 PLN00141 Tic62-NAD(P)-related 94.8 0.058 1.3E-06 51.0 5.9 40 57-103 13-53 (251)
329 KOG1502 Flavonol reductase/cin 94.8 0.14 2.9E-06 50.5 8.5 81 60-152 5-86 (327)
330 PRK01438 murD UDP-N-acetylmura 94.8 0.11 2.4E-06 54.2 8.4 35 60-101 15-49 (480)
331 TIGR01761 thiaz-red thiazoliny 94.7 0.11 2.4E-06 51.9 7.8 68 61-154 3-72 (343)
332 PRK05868 hypothetical protein; 94.6 0.045 9.7E-07 55.2 5.0 36 61-103 1-36 (372)
333 PTZ00188 adrenodoxin reductase 94.6 0.1 2.2E-06 54.4 7.4 86 60-156 38-138 (506)
334 PRK14191 bifunctional 5,10-met 94.6 0.092 2E-06 50.8 6.7 72 61-178 157-229 (285)
335 TIGR03649 ergot_EASG ergot alk 94.6 0.25 5.4E-06 47.5 9.9 34 63-103 1-35 (285)
336 PRK05678 succinyl-CoA syntheta 94.6 0.28 6E-06 47.8 10.1 90 61-182 8-101 (291)
337 PRK06753 hypothetical protein; 94.6 0.048 1E-06 54.6 5.0 34 62-102 1-34 (373)
338 COG0136 Asd Aspartate-semialde 94.5 0.27 5.9E-06 48.4 9.9 98 61-181 1-100 (334)
339 TIGR01381 E1_like_apg7 E1-like 94.5 0.091 2E-06 56.1 7.0 33 62-100 339-371 (664)
340 PRK00141 murD UDP-N-acetylmura 94.4 0.13 2.7E-06 53.8 7.9 38 58-102 12-49 (473)
341 TIGR01019 sucCoAalpha succinyl 94.4 0.36 7.9E-06 46.9 10.5 91 61-182 6-99 (286)
342 PRK06847 hypothetical protein; 94.4 0.06 1.3E-06 53.9 5.4 36 60-102 3-38 (375)
343 PF03447 NAD_binding_3: Homose 94.4 0.31 6.7E-06 40.4 8.8 91 68-182 1-94 (117)
344 cd01079 NAD_bind_m-THF_DH NAD 94.3 0.14 3.1E-06 46.6 7.0 94 61-178 62-156 (197)
345 PRK03369 murD UDP-N-acetylmura 94.3 0.17 3.6E-06 53.1 8.4 68 61-153 12-79 (488)
346 PRK08773 2-octaprenyl-3-methyl 94.3 0.065 1.4E-06 54.2 5.2 36 59-101 4-39 (392)
347 PRK12769 putative oxidoreducta 94.2 0.13 2.9E-06 55.8 7.9 36 60-102 326-361 (654)
348 PF13450 NAD_binding_8: NAD(P) 94.2 0.092 2E-06 39.4 4.6 31 66-103 1-31 (68)
349 KOG0068 D-3-phosphoglycerate d 94.2 0.18 3.9E-06 49.5 7.6 141 13-184 99-242 (406)
350 PRK02472 murD UDP-N-acetylmura 94.2 0.21 4.6E-06 51.5 8.9 35 61-102 5-39 (447)
351 PRK12550 shikimate 5-dehydroge 94.2 0.11 2.3E-06 50.3 6.2 90 62-178 123-216 (272)
352 KOG2741 Dimeric dihydrodiol de 94.1 0.24 5.1E-06 48.8 8.5 89 58-166 3-94 (351)
353 PRK07878 molybdopterin biosynt 94.1 0.16 3.4E-06 51.8 7.6 93 61-166 42-154 (392)
354 TIGR01318 gltD_gamma_fam gluta 94.0 0.15 3.2E-06 53.1 7.5 35 60-101 140-174 (467)
355 PRK07411 hypothetical protein; 94.0 0.16 3.4E-06 51.7 7.4 93 61-165 38-149 (390)
356 PRK00421 murC UDP-N-acetylmura 94.0 0.18 3.9E-06 52.4 8.1 38 58-102 4-42 (461)
357 PF01494 FAD_binding_3: FAD bi 94.0 0.084 1.8E-06 51.7 5.3 35 62-103 2-36 (356)
358 cd01489 Uba2_SUMO Ubiquitin ac 93.9 0.25 5.4E-06 48.6 8.2 33 63-101 1-33 (312)
359 cd05211 NAD_bind_Glu_Leu_Phe_V 93.8 0.2 4.3E-06 46.7 7.2 37 59-101 21-57 (217)
360 PRK07364 2-octaprenyl-6-methox 93.8 0.12 2.7E-06 52.5 6.2 38 58-102 15-52 (415)
361 PRK08849 2-octaprenyl-3-methyl 93.8 0.084 1.8E-06 53.3 5.0 35 60-101 2-36 (384)
362 PRK05732 2-octaprenyl-6-methox 93.8 0.078 1.7E-06 53.4 4.7 35 59-100 1-38 (395)
363 PRK07588 hypothetical protein; 93.8 0.085 1.8E-06 53.3 5.0 34 62-102 1-34 (391)
364 PRK07538 hypothetical protein; 93.8 0.084 1.8E-06 53.9 4.9 34 62-102 1-34 (413)
365 cd01491 Ube1_repeat1 Ubiquitin 93.7 0.52 1.1E-05 45.8 10.1 35 61-101 19-53 (286)
366 PRK02006 murD UDP-N-acetylmura 93.7 0.27 5.8E-06 51.7 8.7 35 60-101 6-40 (498)
367 COG1648 CysG Siroheme synthase 93.7 0.31 6.7E-06 45.2 8.0 87 57-166 8-94 (210)
368 PRK11908 NAD-dependent epimera 93.6 0.11 2.4E-06 51.6 5.4 35 61-102 1-37 (347)
369 COG0665 DadA Glycine/D-amino a 93.6 0.11 2.3E-06 52.2 5.3 37 59-102 2-38 (387)
370 PRK07494 2-octaprenyl-6-methox 93.6 0.097 2.1E-06 52.8 5.0 34 62-102 8-41 (388)
371 PRK01390 murD UDP-N-acetylmura 93.6 0.2 4.3E-06 52.0 7.4 36 60-102 8-43 (460)
372 PLN02427 UDP-apiose/xylose syn 93.6 0.15 3.2E-06 51.6 6.3 37 60-103 13-51 (386)
373 PRK14176 bifunctional 5,10-met 93.6 0.23 4.9E-06 48.1 7.2 72 61-178 164-236 (287)
374 PLN00093 geranylgeranyl diphos 93.5 0.17 3.6E-06 52.6 6.7 34 62-102 40-73 (450)
375 PRK08013 oxidoreductase; Provi 93.5 0.1 2.2E-06 53.1 5.0 35 61-102 3-37 (400)
376 PRK08374 homoserine dehydrogen 93.5 0.19 4.2E-06 50.0 6.8 108 61-181 2-125 (336)
377 PRK11259 solA N-methyltryptoph 93.5 0.1 2.2E-06 52.2 5.0 33 62-101 4-36 (376)
378 PRK05562 precorrin-2 dehydroge 93.5 0.68 1.5E-05 43.3 10.0 84 60-166 24-107 (223)
379 PRK14173 bifunctional 5,10-met 93.4 0.21 4.6E-06 48.4 6.7 71 61-177 155-226 (287)
380 PRK14183 bifunctional 5,10-met 93.3 0.23 4.9E-06 48.0 6.7 72 61-178 157-229 (281)
381 cd01488 Uba3_RUB Ubiquitin act 93.3 0.22 4.7E-06 48.5 6.6 87 63-163 1-107 (291)
382 PRK14190 bifunctional 5,10-met 93.3 0.24 5.3E-06 47.9 6.9 72 61-178 158-230 (284)
383 TIGR03219 salicylate_mono sali 93.3 0.11 2.4E-06 52.9 4.9 36 62-103 1-36 (414)
384 TIGR03466 HpnA hopanoid-associ 93.2 0.11 2.4E-06 50.6 4.6 35 62-103 1-36 (328)
385 COG0654 UbiH 2-polyprenyl-6-me 93.2 0.11 2.3E-06 52.7 4.6 33 61-100 2-34 (387)
386 PRK07045 putative monooxygenas 93.2 0.13 2.8E-06 51.9 5.2 37 60-103 4-40 (388)
387 PLN00016 RNA-binding protein; 93.1 0.12 2.5E-06 52.2 4.7 61 35-103 27-92 (378)
388 PRK14169 bifunctional 5,10-met 93.1 0.28 6E-06 47.5 7.0 71 62-178 157-228 (282)
389 PF03720 UDPG_MGDP_dh_C: UDP-g 93.0 0.28 6.2E-06 40.1 6.1 85 71-179 17-102 (106)
390 PF01266 DAO: FAD dependent ox 93.0 0.15 3.2E-06 50.0 5.2 31 63-100 1-31 (358)
391 PRK08955 glyceraldehyde-3-phos 93.0 0.57 1.2E-05 46.5 9.2 106 62-178 3-119 (334)
392 PLN02662 cinnamyl-alcohol dehy 93.0 0.33 7.2E-06 47.3 7.6 35 62-103 5-40 (322)
393 PRK14178 bifunctional 5,10-met 93.0 0.34 7.3E-06 46.8 7.3 72 61-178 152-224 (279)
394 COG1063 Tdh Threonine dehydrog 92.9 0.36 7.9E-06 48.3 7.9 35 63-103 171-205 (350)
395 PRK11728 hydroxyglutarate oxid 92.9 0.14 2.9E-06 52.0 4.9 33 62-101 3-37 (393)
396 PRK07806 short chain dehydroge 92.9 0.77 1.7E-05 42.8 9.7 36 60-102 5-41 (248)
397 PRK14172 bifunctional 5,10-met 92.9 0.32 6.8E-06 47.0 7.0 71 61-177 158-229 (278)
398 PRK14186 bifunctional 5,10-met 92.8 0.29 6.4E-06 47.6 6.8 71 62-178 159-230 (297)
399 PRK06185 hypothetical protein; 92.8 0.16 3.4E-06 51.5 5.2 35 61-102 6-40 (407)
400 PRK06617 2-octaprenyl-6-methox 92.8 0.13 2.8E-06 51.8 4.5 33 61-100 1-33 (374)
401 PRK07877 hypothetical protein; 92.8 0.29 6.3E-06 53.5 7.3 91 62-165 108-217 (722)
402 PRK14177 bifunctional 5,10-met 92.8 0.33 7.2E-06 47.0 7.0 71 61-177 159-230 (284)
403 cd01076 NAD_bind_1_Glu_DH NAD( 92.7 0.32 6.9E-06 45.7 6.7 35 58-99 28-63 (227)
404 PRK13394 3-hydroxybutyrate deh 92.7 0.21 4.5E-06 47.0 5.6 38 59-103 5-43 (262)
405 TIGR01745 asd_gamma aspartate- 92.7 0.3 6.5E-06 49.0 6.8 95 62-181 1-100 (366)
406 PRK02705 murD UDP-N-acetylmura 92.7 0.48 1E-05 49.1 8.6 33 63-102 2-34 (459)
407 COG0300 DltE Short-chain dehyd 92.7 0.19 4E-06 48.2 5.1 39 58-103 3-42 (265)
408 PRK14170 bifunctional 5,10-met 92.7 0.33 7.1E-06 47.0 6.8 71 61-177 157-228 (284)
409 PRK12826 3-ketoacyl-(acyl-carr 92.6 0.21 4.5E-06 46.5 5.4 38 59-103 4-42 (251)
410 KOG1399 Flavin-containing mono 92.6 0.16 3.6E-06 52.4 5.0 37 59-102 4-40 (448)
411 PLN02172 flavin-containing mon 92.6 0.19 4E-06 52.4 5.4 37 59-102 8-44 (461)
412 PRK12939 short chain dehydroge 92.6 0.26 5.6E-06 46.0 6.0 38 59-103 5-43 (250)
413 PRK14166 bifunctional 5,10-met 92.5 0.34 7.3E-06 46.9 6.7 72 61-178 157-229 (282)
414 smart00846 Gp_dh_N Glyceraldeh 92.5 1.2 2.5E-05 39.0 9.6 22 62-83 1-22 (149)
415 PRK08850 2-octaprenyl-6-methox 92.5 0.16 3.5E-06 51.6 4.8 33 61-100 4-36 (405)
416 PRK14180 bifunctional 5,10-met 92.5 0.35 7.5E-06 46.8 6.7 71 61-177 158-229 (282)
417 TIGR01373 soxB sarcosine oxida 92.4 0.24 5.1E-06 50.4 5.9 45 50-101 15-65 (407)
418 PLN02657 3,8-divinyl protochlo 92.4 0.29 6.2E-06 49.8 6.5 38 59-103 58-96 (390)
419 TIGR02360 pbenz_hydroxyl 4-hyd 92.4 0.19 4.1E-06 51.0 5.1 34 62-102 3-36 (390)
420 PRK05335 tRNA (uracil-5-)-meth 92.4 0.19 4.2E-06 51.4 5.1 34 61-101 2-35 (436)
421 PLN02516 methylenetetrahydrofo 92.4 0.4 8.7E-06 46.7 7.1 72 61-178 167-239 (299)
422 PRK14573 bifunctional D-alanyl 92.4 0.39 8.6E-06 53.6 8.0 37 58-101 1-38 (809)
423 PRK06126 hypothetical protein; 92.4 0.21 4.5E-06 53.0 5.6 35 61-102 7-41 (545)
424 COG1832 Predicted CoA-binding 92.3 1.3 2.8E-05 37.9 9.1 91 61-184 16-110 (140)
425 PRK06184 hypothetical protein; 92.3 0.2 4.2E-06 52.7 5.2 37 60-103 2-38 (502)
426 COG0493 GltD NADPH-dependent g 92.3 0.16 3.5E-06 52.7 4.4 81 62-155 124-219 (457)
427 PLN02927 antheraxanthin epoxid 92.2 0.24 5.2E-06 53.7 5.8 37 58-101 78-114 (668)
428 PLN02214 cinnamoyl-CoA reducta 92.2 0.4 8.7E-06 47.6 7.1 36 60-102 9-45 (342)
429 PRK14187 bifunctional 5,10-met 92.2 0.4 8.6E-06 46.6 6.7 71 61-177 160-231 (294)
430 PRK06475 salicylate hydroxylas 92.1 0.19 4.2E-06 51.0 4.8 34 62-102 3-36 (400)
431 PTZ00367 squalene epoxidase; P 92.1 0.23 5E-06 53.0 5.5 34 61-101 33-66 (567)
432 PLN02897 tetrahydrofolate dehy 92.1 0.37 7.9E-06 47.8 6.4 71 61-177 214-285 (345)
433 TIGR03693 ocin_ThiF_like putat 92.1 0.78 1.7E-05 48.8 9.1 87 60-158 128-218 (637)
434 cd05312 NAD_bind_1_malic_enz N 92.1 4.1 8.8E-05 39.4 13.4 111 61-182 25-144 (279)
435 TIGR03736 PRTRC_ThiF PRTRC sys 92.1 0.23 4.9E-06 47.1 4.8 42 60-101 10-55 (244)
436 PRK12429 3-hydroxybutyrate deh 92.0 0.3 6.6E-06 45.7 5.8 37 60-103 3-40 (258)
437 PRK09126 hypothetical protein; 92.0 0.21 4.6E-06 50.3 5.0 34 62-102 4-37 (392)
438 PRK14182 bifunctional 5,10-met 92.0 0.49 1.1E-05 45.7 7.0 71 61-177 157-228 (282)
439 PRK07208 hypothetical protein; 91.9 0.23 5.1E-06 51.6 5.3 38 58-102 1-38 (479)
440 PLN02985 squalene monooxygenas 91.9 0.28 6E-06 51.8 5.8 36 59-101 41-76 (514)
441 TIGR01082 murC UDP-N-acetylmur 91.9 2.1 4.5E-05 44.3 12.3 65 63-152 1-66 (448)
442 PLN02520 bifunctional 3-dehydr 91.9 0.37 8E-06 51.1 6.7 36 61-103 379-414 (529)
443 TIGR01377 soxA_mon sarcosine o 91.9 0.21 4.6E-06 50.0 4.7 32 63-101 2-33 (380)
444 PLN02616 tetrahydrofolate dehy 91.8 0.41 9E-06 47.7 6.5 71 61-177 231-302 (364)
445 PRK14193 bifunctional 5,10-met 91.8 0.46 1E-05 46.0 6.7 71 61-177 158-231 (284)
446 PRK14171 bifunctional 5,10-met 91.8 0.5 1.1E-05 45.8 6.9 71 61-177 159-230 (288)
447 PLN02650 dihydroflavonol-4-red 91.8 0.51 1.1E-05 46.8 7.4 37 60-103 4-41 (351)
448 TIGR01988 Ubi-OHases Ubiquinon 91.8 0.22 4.7E-06 49.8 4.7 33 63-102 1-33 (385)
449 COG0771 MurD UDP-N-acetylmuram 91.8 0.45 9.7E-06 49.1 6.9 35 61-102 7-41 (448)
450 cd00755 YgdL_like Family of ac 91.7 0.25 5.4E-06 46.5 4.7 35 61-101 11-45 (231)
451 PRK01747 mnmC bifunctional tRN 91.6 0.21 4.6E-06 54.3 4.8 33 62-101 261-293 (662)
452 PF00743 FMO-like: Flavin-bind 91.6 0.25 5.4E-06 52.3 5.1 35 62-103 2-36 (531)
453 PRK14181 bifunctional 5,10-met 91.6 0.55 1.2E-05 45.5 6.9 75 61-177 153-228 (287)
454 TIGR02028 ChlP geranylgeranyl 91.6 0.26 5.6E-06 50.2 5.0 34 62-102 1-34 (398)
455 PRK08132 FAD-dependent oxidore 91.5 0.28 6E-06 52.1 5.4 36 60-102 22-57 (547)
456 PRK13535 erythrose 4-phosphate 91.5 1.7 3.6E-05 43.3 10.5 109 61-178 1-122 (336)
457 COG3349 Uncharacterized conser 91.5 0.25 5.4E-06 51.2 4.7 34 62-102 1-34 (485)
458 PRK05866 short chain dehydroge 91.5 0.42 9E-06 46.4 6.1 36 61-103 40-76 (293)
459 PRK06183 mhpA 3-(3-hydroxyphen 91.5 0.33 7.1E-06 51.5 5.8 37 59-102 8-44 (538)
460 PRK08243 4-hydroxybenzoate 3-m 91.5 0.26 5.7E-06 49.8 4.9 35 61-102 2-36 (392)
461 PRK06194 hypothetical protein; 91.4 0.42 9.1E-06 45.8 6.0 38 59-103 4-42 (287)
462 COG0644 FixC Dehydrogenases (f 91.4 0.29 6.3E-06 49.8 5.1 37 60-103 2-38 (396)
463 PLN00198 anthocyanidin reducta 91.3 0.71 1.5E-05 45.5 7.8 39 58-103 6-45 (338)
464 PRK04308 murD UDP-N-acetylmura 91.3 1 2.3E-05 46.4 9.3 35 61-102 5-39 (445)
465 PRK00961 H(2)-dependent methyl 91.3 6.7 0.00014 37.7 13.5 110 130-250 127-240 (342)
466 PRK12266 glpD glycerol-3-phosp 91.3 0.31 6.8E-06 51.3 5.4 36 58-100 3-38 (508)
467 PRK08020 ubiF 2-octaprenyl-3-m 91.3 0.25 5.4E-06 49.8 4.5 33 62-101 6-38 (391)
468 PRK04690 murD UDP-N-acetylmura 91.3 0.82 1.8E-05 47.7 8.5 34 61-101 8-41 (468)
469 PRK15116 sulfur acceptor prote 91.3 0.32 7E-06 46.8 5.0 36 60-101 29-64 (268)
470 TIGR03364 HpnW_proposed FAD de 91.2 0.28 6E-06 49.0 4.8 32 63-101 2-33 (365)
471 cd01484 E1-2_like Ubiquitin ac 91.2 0.3 6.5E-06 46.0 4.7 33 63-101 1-33 (234)
472 PF03059 NAS: Nicotianamine sy 91.2 0.54 1.2E-05 45.3 6.5 104 60-181 120-234 (276)
473 COG1233 Phytoene dehydrogenase 91.2 0.28 6.2E-06 51.4 5.0 37 59-102 1-37 (487)
474 TIGR01546 GAPDH-II_archae glyc 91.2 0.84 1.8E-05 45.3 8.0 80 64-155 1-86 (333)
475 PLN02852 ferredoxin-NADP+ redu 91.1 0.45 9.7E-06 49.9 6.3 39 58-103 23-63 (491)
476 PLN02358 glyceraldehyde-3-phos 91.1 1.4 3.1E-05 43.8 9.5 24 61-84 5-28 (338)
477 PRK10538 malonic semialdehyde 91.0 1.2 2.6E-05 41.7 8.7 35 62-103 1-36 (248)
478 PRK05714 2-octaprenyl-3-methyl 91.0 0.24 5.3E-06 50.2 4.2 32 63-101 4-35 (405)
479 TIGR00031 UDP-GALP_mutase UDP- 91.0 0.33 7.3E-06 49.1 5.1 35 61-102 1-35 (377)
480 PTZ00383 malate:quinone oxidor 91.0 0.43 9.4E-06 50.1 6.0 40 57-101 41-80 (497)
481 KOG1298 Squalene monooxygenase 90.9 0.56 1.2E-05 47.0 6.3 34 62-102 46-79 (509)
482 COG0026 PurK Phosphoribosylami 90.8 1 2.2E-05 44.9 7.9 77 61-163 1-84 (375)
483 PRK07608 ubiquinone biosynthes 90.7 0.35 7.6E-06 48.6 5.0 35 62-103 6-40 (388)
484 COG0190 FolD 5,10-methylene-te 90.7 0.67 1.4E-05 44.6 6.5 71 61-177 156-227 (283)
485 cd08237 ribitol-5-phosphate_DH 90.7 1.7 3.7E-05 43.0 9.8 89 62-176 165-254 (341)
486 PRK12814 putative NADPH-depend 90.6 0.43 9.4E-06 51.9 5.8 36 60-102 192-227 (652)
487 KOG0023 Alcohol dehydrogenase, 90.5 0.95 2.1E-05 44.3 7.4 92 62-177 183-278 (360)
488 PRK13984 putative oxidoreducta 90.5 1.1 2.4E-05 48.3 8.7 37 59-102 281-317 (604)
489 PRK05565 fabG 3-ketoacyl-(acyl 90.4 0.54 1.2E-05 43.6 5.6 37 60-103 4-42 (247)
490 PLN02695 GDP-D-mannose-3',5'-e 90.3 0.47 1E-05 47.8 5.5 38 57-101 17-55 (370)
491 PF03949 Malic_M: Malic enzyme 90.2 4.3 9.3E-05 38.7 11.4 112 61-182 25-145 (255)
492 PRK01368 murD UDP-N-acetylmura 90.2 3.6 7.9E-05 42.7 12.1 32 62-101 7-38 (454)
493 TIGR00137 gid_trmFO tRNA:m(5)U 90.2 0.38 8.2E-06 49.5 4.7 33 63-102 2-34 (433)
494 PRK06182 short chain dehydroge 90.2 0.5 1.1E-05 45.0 5.4 37 60-103 2-39 (273)
495 cd08230 glucose_DH Glucose deh 90.2 1.5 3.2E-05 43.6 8.9 32 62-100 174-205 (355)
496 COG3380 Predicted NAD/FAD-depe 90.2 0.46 1E-05 45.5 4.8 35 62-103 2-36 (331)
497 PRK05653 fabG 3-ketoacyl-(acyl 90.2 0.6 1.3E-05 43.1 5.8 38 59-103 3-41 (246)
498 PLN03075 nicotianamine synthas 90.2 1.5 3.2E-05 42.8 8.5 106 60-181 123-237 (296)
499 TIGR01087 murD UDP-N-acetylmur 90.1 1.1 2.3E-05 46.1 8.1 33 63-102 1-33 (433)
500 PRK14168 bifunctional 5,10-met 90.1 0.77 1.7E-05 44.8 6.5 75 61-177 161-236 (297)
No 1
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.9e-56 Score=428.89 Aligned_cols=321 Identities=38% Similarity=0.573 Sum_probs=303.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+|||+|||+|+||+++|..|+++| |+|++|.|+++. ++.|+..+.|.+|+|++.+|.++++++|+++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng-------~~V~lw~r~~~~------~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~ 67 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG-------HEVRLWGRDEEI------VAEINETRENPKYLPGILLPPNLKATTDLAE 67 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC-------CeeEEEecCHHH------HHHHHhcCcCccccCCccCCcccccccCHHH
Confidence 589999999999999999999999 999999999876 8889998889999999999999999999999
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhcC
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVEK 219 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g~ 219 (419)
+++++|+|+++||++.++++++++.+.+.+++++|+++||+.++ +...+++++++.+|. ++.+++||++|.|+++|.
T Consensus 68 a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~--t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~ 145 (329)
T COG0240 68 ALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPE--TGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGL 145 (329)
T ss_pred HHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCC--CcchHHHHHHHHcCCCeEEEEECccHHHHHhcCC
Confidence 99999999999999999999999998999999999999999865 578899999998874 589999999999999999
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHH
Q 014739 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFS 299 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la 299 (419)
|+.+++++. |.+.+++++.+|++..|+++.++|+.|+|.++++||++|+++|+.+++.+|+|+.+++++++++||.+++
T Consensus 146 pta~~vas~-d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg 224 (329)
T COG0240 146 PTAVVVASN-DQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLG 224 (329)
T ss_pred CcEEEEecC-CHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHH
Confidence 999999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCC
Q 014739 300 KLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWL 377 (419)
Q Consensus 300 ~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~ 377 (419)
.++| .+|++|.+++|+||+++||++ |||+++|..+++ | .++++++..+ |+++||.++.+.++++++++|+
T Consensus 225 ~~lG--~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg~-g--~~~~e~l~~~--g~vvEGv~t~k~v~~la~~~~i- 296 (329)
T COG0240 225 VALG--AKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLGQ-G--LSLDEALEEI--GQVVEGVRTAKAVYELAKKLGI- 296 (329)
T ss_pred HHhC--CCcchhcccccccceeEecCCCccccHHHHHHHhC-C--CCHHHHHHhc--CCeeecHHHHHHHHHHHHHcCC-
Confidence 9995 789999999999999999998 999999999998 6 5677766654 9999999999999999999999
Q ss_pred cCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014739 378 ELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 378 ~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
++|+++.+|++++++++|++.++.|...
T Consensus 297 -~mPI~~~Vy~vl~~~~~~~~~~~~L~~r 324 (329)
T COG0240 297 -EMPITEAVYRVLYEGLDPKEAIEELMGR 324 (329)
T ss_pred -CCCHHHHHHHHHhCCCCHHHHHHHHhcc
Confidence 9999999999999999999999998653
No 2
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-55 Score=434.75 Aligned_cols=345 Identities=52% Similarity=0.904 Sum_probs=313.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.|||+|||+|+||+++|..|+++|.....|+|+|.+|.|+++. +.+++++.|++.+.|.+|+|++++|+++++++|+++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~-~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV-EGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc-cchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 4799999999999999999999974333445799999999863 344568999999999999999999999999999988
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhc--cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhc
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVG--KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVE 218 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~--~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g 218 (419)
++.++|+||++||++.++++++++.+ .+.+++++|+++||+..++.....+++++++.++.++.+++||++|.|+..+
T Consensus 90 av~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A~Eva~~ 169 (365)
T PTZ00345 90 AVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVANDVARE 169 (365)
T ss_pred HHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHHHHHHcC
Confidence 89999999999999999999999998 7877889999999998764333678999999887778999999999999999
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Q 014739 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
.|+.+++++. +.+.++.++++|++.+|+++.++|+.|+|+++++||++|+++|+++++++|+|+.+++++++++||.++
T Consensus 170 ~pt~~vias~-~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l 248 (365)
T PTZ00345 170 EFSEATIGCE-DKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLF 248 (365)
T ss_pred CCcEEEEEeC-CHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 9999999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccC-CCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCC
Q 014739 299 SKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEG-KRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWL 377 (419)
Q Consensus 299 a~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~-~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~ 377 (419)
++++|.|.++++|++++|+||+++||++|||+++|..+++ |. +.+++++++.+.+|+++||..++..++++++++++.
T Consensus 249 ~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~-g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~ 327 (365)
T PTZ00345 249 GKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAK-RNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLK 327 (365)
T ss_pred HHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhc-cCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCC
Confidence 9999744699999999999999999999999999999998 42 247888887766799999999999999999999984
Q ss_pred cCCcHHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 014739 378 ELFPLFATVHEICVGHLPPSAIVEYSERKPR 408 (419)
Q Consensus 378 ~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (419)
.++|+++++|++++++.+|+++++.|.+++.
T Consensus 328 ~~~Pi~~~vy~il~~~~~~~~~~~~l~~r~~ 358 (365)
T PTZ00345 328 KEFPLFTVTYKIAFEGADPSSLIDVLSTNEL 358 (365)
T ss_pred CCCCHHHHHHHHHhCCCCHHHHHHHHHcCCC
Confidence 5799999999999999999999999987543
No 3
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=100.00 E-value=9.8e-54 Score=421.24 Aligned_cols=335 Identities=57% Similarity=0.917 Sum_probs=304.3
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCC-CCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSS-FHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~-~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
||+|||+|+||+++|..|+++|...++ |.|+|++|.|++.. +.+++.+.+++.+.+.+|+|++++|+++++++|++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~-~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEI-EGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecccc-CCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 699999999999999999998732221 44799999996532 3455688999988899999999999999999999999
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCce
Q 014739 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFS 221 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~~ 221 (419)
+.++|+||++||++.++++++++.+++++++++|+++||+..++.+...+++++++.++.++.+++||++|.|+..|.|+
T Consensus 80 l~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~~pt 159 (342)
T TIGR03376 80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKEKFS 159 (342)
T ss_pred HhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcCCCc
Confidence 99999999999999999999999999988999999999998754467889999999887788999999999999999999
Q ss_pred eEEEeecCC----HHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHH
Q 014739 222 EATVGYRDN----REIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRA 297 (419)
Q Consensus 222 ~~~~~~~~~----~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~ 297 (419)
.+++++. + .+.++.++++|++.+|+++.++|+.|+|+++++||++|+++|+++++++|+|+.+++++++++||.+
T Consensus 160 ~~~ia~~-~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~ 238 (342)
T TIGR03376 160 ETTVGYR-DPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIK 238 (342)
T ss_pred eEEEEeC-CCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999988 7 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcc--chhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcC
Q 014739 298 FSKLLFSSVKDS--TFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRG 375 (419)
Q Consensus 298 la~a~g~g~~~~--~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~g 375 (419)
+++++| .+++ +|++++|+||+++||++|||+++|..++++| .+++++.+.++.|+++||..+++.+++++++++
T Consensus 239 l~~~~g--~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g--~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~ 314 (342)
T TIGR03376 239 FARMFF--PTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTG--KSLEELEKELLNGQSLQGVATAKEVHELLKNKN 314 (342)
T ss_pred HHHHhC--CCCCCCcccccchhhhhhheeecCccHHHHHHHHhcC--CCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcC
Confidence 999996 5666 9999999999999999999999999999844 688888877557999999999999999999999
Q ss_pred CCcCCcHHHHHHHHHhCCCCHHHHHHHH
Q 014739 376 WLELFPLFATVHEICVGHLPPSAIVEYS 403 (419)
Q Consensus 376 v~~~~P~~~~~~~~l~~~~~~~~~~~~~ 403 (419)
+..++|+++++|++++++++|+++++++
T Consensus 315 i~~~~Pi~~~vy~il~~~~~~~~~~~~~ 342 (342)
T TIGR03376 315 KDDEFPLFEAVYQILYEGLPPKKLPECL 342 (342)
T ss_pred CCcCCCHHHHHHHHHhCCCCHHHHHhhC
Confidence 9222999999999999999999998864
No 4
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.7e-50 Score=397.01 Aligned_cols=333 Identities=30% Similarity=0.420 Sum_probs=301.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC-CCccCCCeEecC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP-GIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~-~~~l~~~i~~~~ 136 (419)
...+|||+|||+|+||+++|..|+++| +|.+|.|+++. ++.+++.+.+..+++ +..++.++.+++
T Consensus 4 ~~~~mkI~IiGaGa~G~alA~~La~~g--------~v~l~~~~~~~------~~~i~~~~~~~~~l~~~~~l~~~i~~t~ 69 (341)
T PRK12439 4 AKREPKVVVLGGGSWGTTVASICARRG--------PTLQWVRSAET------ADDINDNHRNSRYLGNDVVLSDTLRATT 69 (341)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC--------CEEEEeCCHHH------HHHHHhcCCCcccCCCCcccCCCeEEEC
Confidence 345689999999999999999999997 47889888776 788998887777887 667777888889
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC-CceEEEeCcchHHHH
Q 014739 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG-VSCCVLMGANIANEI 215 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g-~~~~v~~gp~~a~e~ 215 (419)
|+++++.++|+||++||+++++++++++.+.+++++++|+++||++.. +...+++.+++.++ .++.++.||+++.++
T Consensus 70 d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~--t~~~~se~i~~~l~~~~~~~l~GP~~a~ev 147 (341)
T PRK12439 70 DFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG--TNMRMSQIIEEVLPGHPAGILAGPNIAREV 147 (341)
T ss_pred CHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC--CCCcHHHHHHHHcCCCCeEEEECCCHHHHH
Confidence 988888999999999999999999999999999899999999999864 35778888888775 457889999999999
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHH
Q 014739 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREM 295 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~ 295 (419)
..|.++.+++++. +.+..+.++++|++.+++++.++|+.+++|++++||++|+++|+++++++++|+.++++.++++|+
T Consensus 148 ~~g~~t~~via~~-~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~ 226 (341)
T PRK12439 148 AEGYAAAAVLAMP-DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREM 226 (341)
T ss_pred HcCCCeEEEEEeC-CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 9999888888887 888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014739 296 RAFSKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 296 ~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
.++++++| .++++|++++|+||+++||++ |||+++|..+++ | .+++++.+.+ ++++||...++.+++++++
T Consensus 227 ~~~~~a~G--~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~-g--~~~~~~~~~~--~~~~EG~~~~~~~~~~~~~ 299 (341)
T PRK12439 227 TKLGVAMG--GNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGA-G--KPIDEIIASM--NQVAEGVKAASVVMEFADE 299 (341)
T ss_pred HHHHHHhC--CCcccccccchhhhhhhhccCCCCccHHHHHHHHC-C--CCHHHHHHhc--CCEEehHHHHHHHHHHHHH
Confidence 99999995 799999999999999999998 899999999998 7 6788887654 7899999999999999999
Q ss_pred cCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcCCccccccCCc
Q 014739 374 RGWLELFPLFATVHEICVGHLPPSAIVEYSERKPRLSLLEGST 416 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (419)
+++ ++|+++.+|++++++++|+++++.|-.++..+=.+|++
T Consensus 300 ~~~--~~Pi~~~~~~il~~~~~~~~~~~~l~~~~~~~e~~~~~ 340 (341)
T PRK12439 300 YGL--NMPIAREVDAVINHGSTVEQAYRGLIAEVPGHEVHGSG 340 (341)
T ss_pred hCC--CCCHHHHHHHHHhCCCCHHHHHHHHhcCCCCcccCCCC
Confidence 999 99999999999999999999999998866555566765
No 5
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=100.00 E-value=2.3e-48 Score=368.03 Aligned_cols=349 Identities=58% Similarity=0.956 Sum_probs=318.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCC-cchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPS-GEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~-~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
++...||+|||+|+||+++|+.+.++-..-+.|..+|.+|.++++.-. ++.+.|-||.++.|++|+|++++|.++.+.+
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 444579999999999999999999986556677789999999887521 3789999999999999999999999999999
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCC--cccHHHHHHhHhCCceEEEeCcchHHH
Q 014739 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREG--PCMISTLISEQLGVSCCVLMGANIANE 214 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~--~~~~~~~i~~~~g~~~~v~~gp~~a~e 214 (419)
|+.+++.+||+++..+|.+.+..++++|..+++++...||++||++..... .+.++++|.+.+|.++.+++||+.|.|
T Consensus 98 dl~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~E 177 (372)
T KOG2711|consen 98 DLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASE 177 (372)
T ss_pred hHHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHH
Confidence 999999999999999999999999999999999999999999999865333 478899999999999999999999999
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHH
Q 014739 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLRE 294 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E 294 (419)
+.++++...++++....+.-..+.++|++.+|+++..+|..++|+++++||++|+++|+.+++.+++|+.+++++.++.|
T Consensus 178 Va~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~E 257 (372)
T KOG2711|consen 178 VANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLE 257 (372)
T ss_pred HHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHH
Confidence 99999999999987222333359999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHc
Q 014739 295 MRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 374 (419)
Q Consensus 295 ~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~ 374 (419)
+..+++.+-++..+++++++||++|++.||+++||++.++.+++.| +++++.++.+.+|+..+|..+++.+++++++.
T Consensus 258 m~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktg--k~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~~ 335 (372)
T KOG2711|consen 258 MIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTG--KSLEELEKELLNGQKLQGPATAKEVYELLQKK 335 (372)
T ss_pred HHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcC--CCHHHHHHHhhCCCcccCcHHHHHHHHHHHHc
Confidence 9999999976558889999999999999999999999999999844 47888889999999999999999999999999
Q ss_pred CCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 014739 375 GWLELFPLFATVHEICVGHLPPSAIVEYSERKPR 408 (419)
Q Consensus 375 gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (419)
|+.+.+|+..++|++++++.+++++++.++..+.
T Consensus 336 ~l~~kfPlftaVykI~~~~~~~~~lle~l~~~~~ 369 (372)
T KOG2711|consen 336 GLVEKFPLFTAVYKICYERLPPQALLECLRNHPE 369 (372)
T ss_pred ChhhhCcHHHHHHHHHhcCCCHHHHHHHHhcccc
Confidence 9977999999999999999999999999998653
No 6
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-44 Score=355.96 Aligned_cols=320 Identities=22% Similarity=0.386 Sum_probs=283.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|+||+++|..|+++| ++|++|+|+++. ++.+++.+.+..++++..++.+++++++++++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g-------~~V~l~~r~~~~------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 67 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK-------ISVNLWGRNHTT------FESINTKRKNLKYLPTCHLPDNISVKSAIDEV 67 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-------CeEEEEecCHHH------HHHHHHcCCCcccCCCCcCCCCeEEeCCHHHH
Confidence 68999999999999999999999 999999998766 78888876666667777777788888888776
Q ss_pred h-cCCCEEEEccCcchHHHHHHHHhc-cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhc
Q 014739 142 V-KDANMLVFVTPHQFMEGICKRLVG-KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVE 218 (419)
Q Consensus 142 ~-~~aDlVilavp~~~~~~vl~~l~~-~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g 218 (419)
+ .++|+||++||+++++++++++.+ .+++++.+++++||++... ...+.+.+.+.++. ++.++.||+++.++..+
T Consensus 68 ~~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~--~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~ 145 (326)
T PRK14620 68 LSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSS--LKFPSEIVNEILPNNPIAILSGPSFAKEIAEK 145 (326)
T ss_pred HhCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCC--CccHHHHHHHHcCCCceEeecCCcHHHHHHcC
Confidence 5 589999999999999999999998 8888888999999997642 34567777777753 56788999999988887
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Q 014739 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
.++.+.+++. +.+..++++++|++.+++++.++|+.+.+|.|+++|+++++.|+..+..++.|...+++.+++.|+.++
T Consensus 146 ~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v 224 (326)
T PRK14620 146 LPCSIVLAGQ-NETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTL 224 (326)
T ss_pred CCcEEEEecC-CHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 7777777776 777889999999999999999999999999999999999999999999888889899999999999999
Q ss_pred HHHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCC
Q 014739 299 SKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGW 376 (419)
Q Consensus 299 a~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv 376 (419)
++++|.+.+++++++++|++|++.||.+ +||+++|..+++ | ++++|+.+. +++++|+...++.++++++++|+
T Consensus 225 ~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~-g--~~~~d~~~~--~~~~vegi~~~~~v~~~a~~~~i 299 (326)
T PRK14620 225 YSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGN-G--FNINQILSE--GKSVIEGFSTVKPLISLAKKLNI 299 (326)
T ss_pred HHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHHHHHC-C--CCHHHHHHh--CCCEeecHHHHHHHHHHHHHhCC
Confidence 9999755689999999999999999984 899999999998 6 678888764 35678999999999999999999
Q ss_pred CcCCcHHHHHHHHHhCCCCHHHHHHHHh
Q 014739 377 LELFPLFATVHEICVGHLPPSAIVEYSE 404 (419)
Q Consensus 377 ~~~~P~~~~~~~~l~~~~~~~~~~~~~~ 404 (419)
++|+++++|++++++.+|+++++.|-
T Consensus 300 --~~P~~~~l~~~~~~~~~~~~~~~~~~ 325 (326)
T PRK14620 300 --ELPICESIYNLLYENISLEKTISVIL 325 (326)
T ss_pred --CCCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999998874
No 7
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-41 Score=337.12 Aligned_cols=320 Identities=31% Similarity=0.464 Sum_probs=275.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
++|||+|||+|+||+++|..|+++| ++|++|+|++++ .+.+++.+.+..++++..++.++..+++++
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G-------~~V~~~~r~~~~------~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~ 69 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKG-------VPVRLWARRPEF------AAALAAERENREYLPGVALPAELYPTADPE 69 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC-------CeEEEEeCCHHH------HHHHHHhCcccccCCCCcCCCCeEEeCCHH
Confidence 4689999999999999999999999 999999998765 677776555555555666666677788888
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcC
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEK 219 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~ 219 (419)
+++.++|+||+|+|+.+++++++.+ +++.++++++||+.+.......+++.+.+.....+.++.||+++.++..+.
T Consensus 70 e~~~~aD~Vi~~v~~~~~~~v~~~l----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~ 145 (328)
T PRK14618 70 EALAGADFAVVAVPSKALRETLAGL----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFL 145 (328)
T ss_pred HHHcCCCEEEEECchHHHHHHHHhc----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCC
Confidence 8888999999999999988887554 467899999999986533345666666542223467889999999998887
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHH
Q 014739 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFS 299 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la 299 (419)
++..++++. +.+.+++++++|+..+++++.++|+.+++|+++++|+++++.|...++++++|...+++.++++|+..++
T Consensus 146 ~~~~~~~~~-~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la 224 (328)
T PRK14618 146 PAATVVASP-EPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFG 224 (328)
T ss_pred CeEEEEEeC-CHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 777778877 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCC
Q 014739 300 KLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWL 377 (419)
Q Consensus 300 ~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~ 377 (419)
+++ |++++++++.++.+|++.+|.+ +||+.+|.++.+ | .+++++.. .+.+.|+.+|.+.+++++++.|+
T Consensus 225 ~~~--G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~-g--~~~~~~~~---~~~~~~g~kd~~~~~~la~~~~~- 295 (328)
T PRK14618 225 VAL--GAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVR-G--VDREHLEA---GGKVVEGLYTVKALDAWAKAHGH- 295 (328)
T ss_pred HHh--CCCccchhcCcchhheeeEeccCCCccHHHHHHHhC-C--CCHHHHHH---cCCEEecHHHHHHHHHHHHHhCC-
Confidence 999 4899999999999999999876 899998988987 5 45554432 46889999999999999999999
Q ss_pred cCCcHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 014739 378 ELFPLFATVHEICVGHLPPSAIVEYSERKP 407 (419)
Q Consensus 378 ~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (419)
++|+.+.+|++++++.+|+++++.+.+++
T Consensus 296 -~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (328)
T PRK14618 296 -DLPIVEAVARVARGGWDPLAGLRSLMGRE 324 (328)
T ss_pred -CCCHHHHHHHHHhCCCCHHHHHHHHhcCC
Confidence 99999999999999999999999997643
No 8
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.3e-40 Score=324.87 Aligned_cols=320 Identities=34% Similarity=0.541 Sum_probs=279.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|+||+++|..|+++| ++|++|+|++++ ++.+++.+.+..+.++..++.++..++++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g-------~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNG-------HDVTLWARDPEQ------AAEINADRENPRYLPGIKLPDNLRATTDLAE 67 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEECCHHH------HHHHHHcCcccccCCCCcCCCCeEEeCCHHH
Confidence 689999999999999999999999 899999998766 6777776655555555555556777788877
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceEEEeCcchHHHHHhc
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCCVLMGANIANEIAVE 218 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~v~~gp~~a~e~~~g 218 (419)
++.++|+||+|||+.+++++++++.+.+++++++|+++||++++ +...+++.+++.++. ...++.+|+.+.+...+
T Consensus 68 ~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~--~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g 145 (325)
T PRK00094 68 ALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPG--TGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARG 145 (325)
T ss_pred HHhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCC--CCCcHHHHHHHHcCCCCceEEEECccHHHHHHcC
Confidence 78899999999999999999999999888899999999999874 346677888776653 56788999999888778
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Q 014739 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
.+..+.+++. +.+.+++++++|+..++++..++|+.+.+|+++++|+++++.|...++++++|...+++..+++|+..+
T Consensus 146 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~l 224 (325)
T PRK00094 146 LPTAVVIAST-DEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL 224 (325)
T ss_pred CCcEEEEEeC-CHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 7776777776 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCC
Q 014739 299 SKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGW 376 (419)
Q Consensus 299 a~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv 376 (419)
++++| ++++++.+.++.+|++.++.+ +||+.+|..+.. + .+++++.+.+ |++.|+.+|++.++++++++|+
T Consensus 225 a~~~G--~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~-~--~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~~~ 297 (325)
T PRK00094 225 GVALG--ANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQ-G--KSLEEALAEI--GMVAEGVRTAKAVYELAKKLGV 297 (325)
T ss_pred HHHhC--CChhhhhcccHhhhhhhhccCCCCccHHHHHHHHC-C--CCHHHHHHHc--CCEeecHHHHHHHHHHHHHhCC
Confidence 99995 899999998888998888877 899999999887 5 4555554432 5899999999999999999999
Q ss_pred CcCCcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014739 377 LELFPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 377 ~~~~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
++|+++++|++++++++|+++++.|.+
T Consensus 298 --~~P~~~~~~~~~~~~~~~~~~~~~~~~ 324 (325)
T PRK00094 298 --EMPITEAVYAVLYEGKDPREAVEDLMG 324 (325)
T ss_pred --CCCHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 999999999999999999999998864
No 9
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-39 Score=316.10 Aligned_cols=295 Identities=28% Similarity=0.435 Sum_probs=263.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..|||+|||+|+||+++|..|+++| |+|++|+|++. ++++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G-------~~V~~~~r~~~---------------------------------~~~~ 42 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANG-------HRVRVWSRRSG---------------------------------LSLA 42 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCC-------CEEEEEeCCCC---------------------------------CCHH
Confidence 4589999999999999999999999 99999998742 2344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhcc-CCCCcEEEEeecCcccCCCCcccHHHHHHhHhC-CceEEEeCcchHHHHHh
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGK-VNGDVEAISLIKGMEVKREGPCMISTLISEQLG-VSCCVLMGANIANEIAV 217 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~-l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g-~~~~v~~gp~~a~e~~~ 217 (419)
++++++|+||+|+|+..++++++++.++ +++++++++++||++++ +...+++.+...++ .++.+++||..+.++..
T Consensus 43 ~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~--~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~ 120 (308)
T PRK14619 43 AVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTATKGLDPE--TTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQ 120 (308)
T ss_pred HHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCC--CCcCHHHHHHHHcCCCceEEEECCCcHHHHhc
Confidence 5677899999999999999999998774 67889999999999864 35667777776664 45677899999999888
Q ss_pred cCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHH
Q 014739 218 EKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRA 297 (419)
Q Consensus 218 g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~ 297 (419)
+.++.++++++ +.+..++++++|+..+++++.++|+.+++|++++||+++++.|+..++++++|...+++.++++|+.+
T Consensus 121 ~~~~~~~~ag~-~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~ 199 (308)
T PRK14619 121 GLPAATVVASR-DLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIR 199 (308)
T ss_pred CCCeEEEEEeC-CHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 87777888888 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcC
Q 014739 298 FSKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRG 375 (419)
Q Consensus 298 la~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~g 375 (419)
+++++| ++++++++++|++|+..+|.+ +||+.+|..++. + .+++++++.+ +.++||.++++.+++++++.|
T Consensus 200 l~~~~G--~~~~t~~~~~g~gd~~~t~~~~~~rn~~~g~~l~~-g--~~~~~~~~~~--~~~~eG~~~~~~~~~~~~~~~ 272 (308)
T PRK14619 200 VGTHLG--AQTETFYGLSGLGDLLATCTSPLSRNYQVGYGLAQ-G--KSLEQILAEL--EGTAEGVNTANVLVQLAQQQN 272 (308)
T ss_pred HHHHhC--CCccccccccchhhhheeecCCCCccHHHHHHHHC-C--CCHHHHHHhc--CCEeecHHHHHHHHHHHHHcC
Confidence 999995 899999999999999999987 899999999987 6 5677777653 568999999999999999999
Q ss_pred CCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014739 376 WLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 376 v~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
+ ++|+.+.+|++++++.+|+++++.+.++
T Consensus 273 ~--~~Pl~~~v~~i~~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 273 I--AVPITEQVYRLLQGEITPQQALEELMER 301 (308)
T ss_pred C--CCCHHHHHHHHHcCCCCHHHHHHHHHcC
Confidence 9 9999999999999999999999999874
No 10
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.96 E-value=4.8e-28 Score=238.07 Aligned_cols=284 Identities=13% Similarity=0.151 Sum_probs=202.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCcc-CCCCccCCCeEecCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY-LPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~-~~~~~l~~~i~~~~~ 137 (419)
+.+|||+|||+|+||+.+|..|+++| ++|+++.|++ .+.+++.|..... .++.... .+.++++
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g-------~~V~~~~r~~--------~~~~~~~g~~~~~~~~~~~~~-~~~~~~~ 66 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAG-------FDVHFLLRSD--------YEAVRENGLQVDSVHGDFHLP-PVQAYRS 66 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCC-------CeEEEEEeCC--------HHHHHhCCeEEEeCCCCeeec-CceEEcc
Confidence 45589999999999999999999999 9999999975 2566666644321 1122221 1344455
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc----e-----EEEeC
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS----C-----CVLMG 208 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~----~-----~v~~g 208 (419)
+++ ...+|+||+|||+.++.++++.+.+.++++++|++++||++.. +.+.+.+|.. . +...+
T Consensus 67 ~~~-~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~--------e~l~~~~~~~~v~~g~~~~~a~~~~ 137 (313)
T PRK06249 67 AED-MPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE--------EQLREILPAEHLLGGLCFICSNRVG 137 (313)
T ss_pred hhh-cCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH--------HHHHHHCCCCcEEEEeeeEeEecCC
Confidence 543 6789999999999999999999999999999999999999863 4555555421 1 22345
Q ss_pred cchHHHHHhcCceeEEEeec--CC-----HHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC-
Q 014739 209 ANIANEIAVEKFSEATVGYR--DN-----REIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG- 280 (419)
Q Consensus 209 p~~a~e~~~g~~~~~~~~~~--~~-----~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~- 280 (419)
|+...+...|. +.++.. .+ .+..+.+.++|+..|+.+.+++|+....|.|++.|+..++.+...+...+
T Consensus 138 pg~v~~~~~g~---~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~ 214 (313)
T PRK06249 138 PGVIHHLAYGR---VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDP 214 (313)
T ss_pred CeEEEECCCCc---EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHH
Confidence 55444332332 344432 12 46778899999999999999999999999999999765555544444433
Q ss_pred ---ccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCe
Q 014739 281 ---NNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQK 357 (419)
Q Consensus 281 ---~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~ 357 (419)
+.....++...+.|+.+++++.|..++. .+.+ . .....+..+. ...+.+||++ +|+.
T Consensus 215 l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~-~~~~-----~---------~~~~~~~~~~-~~sSM~qD~~----~gr~ 274 (313)
T PRK06249 215 LMADPDSRALIRALMAEVIQGAAACGHTLPE-GYAD-----H---------MLAVTERMPD-YRPSMYHDFE----EGRP 274 (313)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHhcCCCCCh-hHHH-----H---------HHHHhhcCCC-CCChHHHHHH----CCCc
Confidence 2335679999999999999999743222 1111 0 0111112222 2113467764 5899
Q ss_pred eehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014739 358 LQGVSTAREVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 358 ~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
+|.+..+|.++++|+++|+ ++|+++++|++++.
T Consensus 275 tEid~i~G~vv~~a~~~Gi--~~P~~~~l~~~l~~ 307 (313)
T PRK06249 275 LELEAIYANPLAAARAAGC--AMPRVEMLYQALEF 307 (313)
T ss_pred ccHHHHhhHHHHHHHHhCC--CCcHHHHHHHHHHH
Confidence 9999999999999999999 99999999999875
No 11
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.96 E-value=1.6e-27 Score=233.00 Aligned_cols=283 Identities=16% Similarity=0.173 Sum_probs=203.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|+||+.+|..|+++| ++|++++|+++. .+.+++.|.+.. .+ .....+..+++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-------~~V~~~~r~~~~------~~~~~~~g~~~~--~~-~~~~~~~~~~~~~~~ 64 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-------HDVTLVARRGAH------LDALNENGLRLE--DG-EITVPVLAADDPAEL 64 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-------CeEEEEECChHH------HHHHHHcCCccc--CC-ceeecccCCCChhHc
Confidence 68999999999999999999999 999999997665 677777665431 11 111112344566554
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-c--------eEEEeCcchH
Q 014739 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-S--------CCVLMGANIA 212 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~--------~~v~~gp~~a 212 (419)
.++|+||+|||+++++++++.+.+.++++++||+++||++.. +.+.+.++. . .....+|+.+
T Consensus 65 -~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~--------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v 135 (304)
T PRK06522 65 -GPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHL--------EELAAYIGPERVLGGVVTHAAELEGPGVV 135 (304)
T ss_pred -CCCCEEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcH--------HHHHHhcCcccEEEEEEEEeeEecCCCEE
Confidence 889999999999999999999999998889999999999753 344444432 1 1235567766
Q ss_pred HHHHhcCceeEEEeecC-CHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC----ccHHHHH
Q 014739 213 NEIAVEKFSEATVGYRD-NREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG----NNTKAAI 287 (419)
Q Consensus 213 ~e~~~g~~~~~~~~~~~-~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~----~n~~~~l 287 (419)
.+.+.| .+.++... ..+..+.+.++|+..++.+.+++|+....|.|+++|+.....+...+...+ ++....+
T Consensus 136 ~~~~~g---~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l 212 (304)
T PRK06522 136 RHTGGG---RLKIGEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRAL 212 (304)
T ss_pred EEcCCC---CEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHH
Confidence 654443 24555431 224578899999999999999999999999999999866655555444433 3456789
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHH
Q 014739 288 MRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREV 367 (419)
Q Consensus 288 ~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v 367 (419)
+..++.|+.+++++.|...+.+.+.+. + ....+..+. ...+.++|++ +|+.+|.+..++.+
T Consensus 213 ~~~~~~E~~~v~~a~G~~~~~~~~~~~------~--------~~~~~~~~~-~~sSm~~D~~----~gr~tEid~i~G~~ 273 (304)
T PRK06522 213 IRALMEEVAAVAEAEGVHLSVEEVREY------V--------RQVIQKTAA-NTSSMLQDLE----AGRPTEIDAIVGYV 273 (304)
T ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHH------H--------HHHhhccCC-CCchHHHHHH----cCCCcccchhccHH
Confidence 999999999999999632222221110 0 011111112 2112356654 58999999999999
Q ss_pred HHHHHHcCCCcCCcHHHHHHHHHhCC
Q 014739 368 YEVLSHRGWLELFPLFATVHEICVGH 393 (419)
Q Consensus 368 ~~~a~~~gv~~~~P~~~~~~~~l~~~ 393 (419)
+++|+++|+ ++|.++++|++++..
T Consensus 274 v~~a~~~gv--~~P~~~~l~~~~~~~ 297 (304)
T PRK06522 274 LRRGRKHGI--PTPLNDALYGLLKAK 297 (304)
T ss_pred HHHHHHcCC--CCcHHHHHHHHHHHH
Confidence 999999999 999999999998653
No 12
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.96 E-value=1.9e-27 Score=232.03 Aligned_cols=282 Identities=17% Similarity=0.181 Sum_probs=208.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|+|+|+||+.+|..|+++| ++|+++.|+++ ++++++.|+.+....+ ........+.+. +.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-------~~V~~~~R~~~-------~~~l~~~GL~i~~~~~-~~~~~~~~~~~~-~~ 64 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-------HDVTLLVRSRR-------LEALKKKGLRIEDEGG-NFTTPVVAATDA-EA 64 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-------CeEEEEecHHH-------HHHHHhCCeEEecCCC-ccccccccccCh-hh
Confidence 79999999999999999999999 89999999875 4889988876554444 111111223333 34
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---------eEEEeCcchH
Q 014739 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---------CCVLMGANIA 212 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---------~~v~~gp~~a 212 (419)
...+|+||++||+++++++++.+.+.+++++.|+.+|||+++. +.+++.++.. .++..+|+++
T Consensus 65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~--------e~l~~~~~~~~il~G~~~~~a~~~~~g~v 136 (307)
T COG1893 65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHE--------EELRKILPKETVLGGVTTHGAVREGPGHV 136 (307)
T ss_pred cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHH--------HHHHHhCCcceEEEEEeeeeeEecCCceE
Confidence 6689999999999999999999999999999999999999874 4455544321 2445566665
Q ss_pred HHHHhcCceeEEEeec--CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC----ccHHHH
Q 014739 213 NEIAVEKFSEATVGYR--DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG----NNTKAA 286 (419)
Q Consensus 213 ~e~~~g~~~~~~~~~~--~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~----~n~~~~ 286 (419)
.+.+.|. +.++.. ...+..+.+.+.|+..++.+.+++|+....|.|++.|......+....++.+ +.....
T Consensus 137 ~~~g~g~---~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~ 213 (307)
T COG1893 137 VHTGLGD---TVIGELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARA 213 (307)
T ss_pred EEecCCc---EEEccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHH
Confidence 5544333 334332 1347889999999999999999999999999999999866555555455443 234567
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHh-hhccCCCCHHHHHHHHhcCCeeehHHHHH
Q 014739 287 IMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAF-AKNEGKRSFDDLEAEMLQGQKLQGVSTAR 365 (419)
Q Consensus 287 l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l-~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~ 365 (419)
++.+.+.|...++++.|..++.+.+. +-....... +. ..++..||+. +|+.+|.++.++
T Consensus 214 l~~~~~~E~~~v~~~~g~~~~~~~~~---------------~v~~~~~~~~~~-~~sSM~qDl~----~gr~tEid~i~G 273 (307)
T COG1893 214 LIRALVAEVVAVARAEGVELPEEVVE---------------RVLAVIRATDAE-NYSSMLQDLE----KGRPTEIDAING 273 (307)
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHH---------------HHHHHHHhcccc-cCchHHHHHH----cCCcccHHHHhh
Confidence 99999999999999996323332111 111222233 22 2112356764 589999999999
Q ss_pred HHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014739 366 EVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 366 ~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
+++++|+++|+ ++|+++++|++++.
T Consensus 274 ~vv~~a~~~gi--~~P~~~~L~~lvk~ 298 (307)
T COG1893 274 AVVRLAKKHGL--ATPVNDTLYALLKA 298 (307)
T ss_pred HHHHHHHHhCC--CCcHHHHHHHHHHH
Confidence 99999999999 99999999999975
No 13
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.95 E-value=2.6e-27 Score=231.87 Aligned_cols=282 Identities=12% Similarity=0.081 Sum_probs=196.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCC-ccCCCeEecCCH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGI-KLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~-~l~~~i~~~~~~ 138 (419)
.|||+|+|+|+||+.+|..|+++| ++|++++|++++ .+++++. |.......+. ..+ +.. .+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G-------~~V~lv~r~~~~------~~~i~~~~Gl~i~~~g~~~~~~--~~~-~~~ 65 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG-------LPVRLILRDRQR------LAAYQQAGGLTLVEQGQASLYA--IPA-ETA 65 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-------CCeEEEEechHH------HHHHhhcCCeEEeeCCcceeec--cCC-CCc
Confidence 479999999999999999999999 899999998655 6788754 4433211111 111 111 112
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-e--------EEEeCc
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-C--------CVLMGA 209 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~--------~v~~gp 209 (419)
++ ...+|+||+|||++++.++++.+.+.+.+++.|+++|||++.+ +.+.+.++.. + +...+|
T Consensus 66 ~~-~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~--------e~l~~~~~~~~v~~g~~~~ga~~~~p 136 (305)
T PRK05708 66 DA-AEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQ--------DAVAARVPHARCIFASSTEGAFRDGD 136 (305)
T ss_pred cc-ccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCH--------HHHHHhCCCCcEEEEEeeeceecCCC
Confidence 22 4578999999999999999999999999999999999999874 4455555532 1 122345
Q ss_pred chHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccH-HHHHH
Q 014739 210 NIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNT-KAAIM 288 (419)
Q Consensus 210 ~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~-~~~l~ 288 (419)
+...+.+.+ .+.++.. ..+..+++.++|...|+++.+++|+....|.|++.|...+..+.......+.-. ....+
T Consensus 137 g~v~~~~~g---~~~~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~ 212 (305)
T PRK05708 137 WRVVFAGHG---FTWLGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEV 212 (305)
T ss_pred CEEEEeceE---EEEEcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHH
Confidence 444332222 2345544 445678899999999999999999999999999999865555544444433210 01567
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHH
Q 014739 289 RIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVY 368 (419)
Q Consensus 289 ~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~ 368 (419)
...+.|+.+++++.|...+++.+.+ .........+. ...+++||++ +|+++|.+..+|.++
T Consensus 213 ~~l~~E~~~va~a~G~~~~~~~~~~--------------~~~~~~~~~~~-~~sSM~qD~~----~gR~tEid~i~G~vv 273 (305)
T PRK05708 213 AALCAELSELLRRCGQPAAAANLHE--------------EVQRVIQATAA-NYSSMYQDVR----AGRRTEISYLLGYAC 273 (305)
T ss_pred HHHHHHHHHHHHHcCCCccHHHHHH--------------HHHHHHHhccC-CCcHHHHHHH----cCCceeehhhhhHHH
Confidence 8999999999999963222221211 00111122222 2112366765 589999999999999
Q ss_pred HHHHHcCCCcCCcHHHHHHHHHhC
Q 014739 369 EVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 369 ~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
++|+++|+ ++|.++++|++++.
T Consensus 274 r~a~~~Gv--~~P~~~~l~~~v~~ 295 (305)
T PRK05708 274 RAADRHGL--PLPRLQHLQQRLVA 295 (305)
T ss_pred HHHHHcCC--CCchHHHHHHHHHH
Confidence 99999999 99999999999864
No 14
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.95 E-value=1.5e-26 Score=226.40 Aligned_cols=283 Identities=16% Similarity=0.127 Sum_probs=198.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC-CCccCCCeEecCCHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP-GIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~-~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|+||+.+|..|+++| ++|++|+| +++ .+.+++.|....... +..++ ...+++.++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-------~~V~~~~r-~~~------~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~ 64 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-------RDVTFLVR-PKR------AKALRERGLVIRSDHGDAVVP--GPVITDPEE 64 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-------CceEEEec-HHH------HHHHHhCCeEEEeCCCeEEec--ceeecCHHH
Confidence 78999999999999999999999 99999999 555 577777665433211 11122 223456666
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-c----e----EEEeCcch
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-S----C----CVLMGANI 211 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~----~----~v~~gp~~ 211 (419)
+..++|+||+|||+.+++++++.+.+.+.++++|++++||++.. +.+.+.++. + + ....+|+.
T Consensus 65 ~~~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~--------~~l~~~~~~~~v~~g~~~~~~~~~~~g~ 136 (305)
T PRK12921 65 LTGPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQL--------EQLEPYFGRERVLGGVVFISAQLNGDGV 136 (305)
T ss_pred ccCCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChH--------HHHHHhCCcccEEEEEEEEEEEECCCeE
Confidence 55789999999999999999999999888899999999999753 344444442 1 1 12234443
Q ss_pred HHHHHhcCceeEEEeec--CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC----ccHHH
Q 014739 212 ANEIAVEKFSEATVGYR--DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG----NNTKA 285 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~--~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~----~n~~~ 285 (419)
..+.. ...+.++.. ...+..+++.++|...++.+.+++|+....|.|++.|...++.+.......+ ++...
T Consensus 137 v~~~~---~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~ 213 (305)
T PRK12921 137 VVQRA---DHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGR 213 (305)
T ss_pred EEEcC---CCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHH
Confidence 33221 123455432 1246778899999999999999999999999999999765555554444432 34456
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHH
Q 014739 286 AIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAR 365 (419)
Q Consensus 286 ~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~ 365 (419)
.++..++.|+.+++++.|...+++.+... + ..+....+. ...++++|++ +|+.+|.+..++
T Consensus 214 ~l~~~~~~E~~~v~~a~G~~~~~~~~~~~------~--------~~~~~~~~~-~~sSm~~D~~----~gr~tEid~i~G 274 (305)
T PRK12921 214 DLARALLRECLAVARAEGAPLRDDVVEEI------V--------KIFAGAPGD-MKTSMLRDME----KGRPLEIDHLQG 274 (305)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhHHHHH------H--------HHHhccCCC-CCcHHHHHHH----cCCcccHHHHHH
Confidence 89999999999999999632222222110 0 001111111 1112355654 589999999999
Q ss_pred HHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014739 366 EVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 366 ~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
.++++|+++|+ ++|.++++|++++.
T Consensus 275 ~vv~~a~~~gv--~~P~~~~l~~~~~~ 299 (305)
T PRK12921 275 VLLRRARAHGI--PTPILDTVYALLKA 299 (305)
T ss_pred HHHHHHHHhCC--CCcHHHHHHHHHHH
Confidence 99999999999 99999999999865
No 15
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.94 E-value=1.9e-25 Score=222.07 Aligned_cols=291 Identities=14% Similarity=0.155 Sum_probs=199.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc---cCCCeEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK---LGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~---l~~~i~~~~~ 137 (419)
||||+|||+|.||+++|..|+++| ++|++|+|++. .+.+++.|......++.. .+.++..+++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G-------~~V~~~~r~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 67 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAG-------ADVTLIGRARI-------GDELRAHGLTLTDYRGRDVRVPPSAIAFSTD 67 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcC-------CcEEEEecHHH-------HHHHHhcCceeecCCCcceecccceeEeccC
Confidence 579999999999999999999999 99999998643 366676665433222211 1234555666
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-c-------e-EEEeC
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-S-------C-CVLMG 208 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~-------~-~v~~g 208 (419)
++ ++.++|+||+|||+.++.++++.+.+.++++++|++++||+... +.+.+.++. . . .+..+
T Consensus 68 ~~-~~~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~--------~~l~~~~~~~~~~~g~~~~~~~~~~ 138 (341)
T PRK08229 68 PA-ALATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA--------DVLRAALPGATVLAGMVPFNVISRG 138 (341)
T ss_pred hh-hccCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH--------HHHHHhCCCCcEEEEEEEEEEEecC
Confidence 64 57899999999999999999999999998999999999998752 334444331 1 1 24557
Q ss_pred cchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCC----CccHH
Q 014739 209 ANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEM----GNNTK 284 (419)
Q Consensus 209 p~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~----~~n~~ 284 (419)
|+.+.+...|. +.++. .+.+++++++|+..++++++++|+.+..|.|+++|++ ++.....+..+ .+...
T Consensus 139 pg~~~~~~~g~---l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~ 211 (341)
T PRK08229 139 PGAFHQGTSGA---LAIEA---SPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSY 211 (341)
T ss_pred CceEEecCCCc---eEecC---CchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchH
Confidence 76654333332 33332 2456899999999999999999999999999999973 22222223322 23445
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccchhccc--CCcceeecccCccc-HHHHHHhhhcc---CCCCHHHHHHHHhcCCee
Q 014739 285 AAIMRIGLREMRAFSKLLFSSVKDSTFFESC--GVADLITTCLGGRN-RKVAEAFAKNE---GKRSFDDLEAEMLQGQKL 358 (419)
Q Consensus 285 ~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~--~~~d~~~t~~~~rn-~~~g~~l~~~g---~~~~~~~~~~~~~~g~~~ 358 (419)
..++..++.|+..++++.| ++++.+.... +...++. ..+.- ......+.... ..+..+|+ .+|+.+
T Consensus 212 ~~~~~~~~~E~~~va~a~G--i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sm~~D~----~~~r~t 283 (341)
T PRK08229 212 RRCLALAQREALRVLKAAG--IRPARLTPLPPAWIPRLLR--LPDPLFRRLAGRMLAIDPLARSSMSDDL----AAGRAT 283 (341)
T ss_pred HHHHHHHHHHHHHHHHHcC--CCccccCCCChhhhhhhhc--CChHHHHHHHHHhhccCCccCchHHHHH----HcCCcc
Confidence 6789999999999999995 7766543211 1100000 00110 01112222101 00123454 468999
Q ss_pred ehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHh
Q 014739 359 QGVSTAREVYEVLSHRGWLELFPLFATVHEICV 391 (419)
Q Consensus 359 Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~ 391 (419)
|.+..++.++++|+++|+ ++|+++++|++++
T Consensus 284 Ei~~i~G~i~~~a~~~gv--~~P~~~~~~~~~~ 314 (341)
T PRK08229 284 EIDWINGEIVRLAGRLGA--PAPVNARLCALVH 314 (341)
T ss_pred hHHHHhhHHHHHHHHcCC--CCcHHHHHHHHHH
Confidence 999999999999999999 9999999999995
No 16
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.93 E-value=3.6e-25 Score=211.24 Aligned_cols=271 Identities=14% Similarity=0.108 Sum_probs=200.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+||+|||+|.||.+||.+|.++| |+|++|+|++++ ..+.+...| .....++.|+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-------~~v~v~~r~~~k-----a~~~~~~~G--------------a~~a~s~~ea 54 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-------HEVTVYNRTPEK-----AAELLAAAG--------------ATVAASPAEA 54 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-------CEEEEEeCChhh-----hhHHHHHcC--------------CcccCCHHHH
Confidence 68999999999999999999999 999999999876 123344434 3456778888
Q ss_pred hcCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHHH
Q 014739 142 VKDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIANE 214 (419)
Q Consensus 142 ~~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~e 214 (419)
+..+|+||+||++ .++++|+ +.+.+.+++++++|++++ ++++ ..+.+++.+++. |. +.+|..|+.-+.
T Consensus 55 a~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp~--~a~~~a~~~~~~-G~~~lDAPVsGg~~~A~- 129 (286)
T COG2084 55 AAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISPE--TARELAAALAAK-GLEFLDAPVSGGVPGAA- 129 (286)
T ss_pred HHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCC-CCHH--HHHHHHHHHHhc-CCcEEecCccCCchhhh-
Confidence 9999999999997 7899998 468888899999999986 6543 234555555543 43 345666665554
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHH
Q 014739 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLRE 294 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E 294 (419)
.|. .+++.++ +++.+++++++|+..+-++++..+. |.....|+.+|........++.|
T Consensus 130 --~Gt--LtimvGG-~~~~f~r~~pvl~~~g~~i~~~G~~-----------------G~G~~~Kl~nn~l~~~~~~a~aE 187 (286)
T COG2084 130 --AGT--LTIMVGG-DAEAFERAKPVLEAMGKNIVHVGPV-----------------GAGQAAKLANNILLAGNIAALAE 187 (286)
T ss_pred --hCc--eEEEeCC-CHHHHHHHHHHHHHhcCceEEECCC-----------------CchHHHHHHHHHHHHHHHHHHHH
Confidence 354 4577777 8999999999999999888887775 23334455566777788999999
Q ss_pred HHHHHHHhcCCCCccchhcccCCcceeecccCcccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014739 295 MRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 295 ~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
...++++. |++++.+.+...-+ .-.+..+ .++.++.+ ++ +++.+. .....||.+++.+.|++
T Consensus 188 Al~la~k~--Gld~~~~~~vi~~~-----~~~s~~~e~~~~~m~~-~~-~~p~F~--------v~~~~KDl~la~~~A~~ 250 (286)
T COG2084 188 ALALAEKA--GLDPDVVLEVISGG-----AAGSWILENYGPRMLE-GD-FSPGFA--------VDLMLKDLGLALDAAKE 250 (286)
T ss_pred HHHHHHHc--CCCHHHHHHHHhcc-----ccCChHHHhhcchhhc-CC-CCcchh--------HHHHHHHHHHHHHHHHh
Confidence 99999999 58999888742211 0011111 12344554 32 444332 33448999999999999
Q ss_pred cCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHh
Q 014739 374 RGWLELFPLFATVHEIC-------VGHLPPSAIVEYSE 404 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~ 404 (419)
.|+ ++|+.+.+.+++ +++.|.+.+++.++
T Consensus 251 ~g~--~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 251 LGA--PLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred cCC--CCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 999 999999988888 46888888888764
No 17
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.92 E-value=1e-24 Score=193.24 Aligned_cols=155 Identities=36% Similarity=0.580 Sum_probs=133.6
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
||+|||+|+||+++|..|+++| ++|++|.|+++. ++.|++.+.+..++++..++.++.+++|+++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-------~~V~l~~~~~~~------~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~ 67 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-------HEVTLWGRDEEQ------IEEINETRQNPKYLPGIKLPENIKATTDLEEAL 67 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-------EEEEEETSCHHH------HHHHHHHTSETTTSTTSBEETTEEEESSHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-------CEEEEEeccHHH------HHHHHHhCCCCCCCCCcccCcccccccCHHHHh
Confidence 7999999999999999999999 999999998765 789999888888999999999999999999999
Q ss_pred cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHhcCce
Q 014739 143 KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEKFS 221 (419)
Q Consensus 143 ~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~g~~~ 221 (419)
+++|+||++||++.++++++++.+++++++++++++||+... +...+++++++.++.+ +.+++||+++.|+..+.++
T Consensus 68 ~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~--~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt 145 (157)
T PF01210_consen 68 EDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPG--TLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPT 145 (157)
T ss_dssp TT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETT--EEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--E
T ss_pred CcccEEEecccHHHHHHHHHHHhhccCCCCEEEEecCCcccC--CCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCe
Confidence 999999999999999999999999999999999999999543 4678899999988754 8999999999999999999
Q ss_pred eEEEeecCCHHH
Q 014739 222 EATVGYRDNREI 233 (419)
Q Consensus 222 ~~~~~~~~~~~~ 233 (419)
.+++++. +.+.
T Consensus 146 ~~~~as~-~~~~ 156 (157)
T PF01210_consen 146 AVVIASK-NEEV 156 (157)
T ss_dssp EEEEEES-SHHH
T ss_pred EEEEEec-cccc
Confidence 9999987 6543
No 18
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.92 E-value=9.5e-24 Score=205.15 Aligned_cols=275 Identities=15% Similarity=0.152 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCC-CccCCCeEecCCHHHHhcCCCEEE
Q 014739 71 NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPG-IKLGKNVVADPDLENAVKDANMLV 149 (419)
Q Consensus 71 ~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~-~~l~~~i~~~~~~~ea~~~aDlVi 149 (419)
+||+.+|..|+++| ++|++++|+ +. .+.+++.|.......+ ...+ .+.+++++++ ..++|+||
T Consensus 1 aiG~~~a~~L~~~G-------~~V~l~~r~-~~------~~~i~~~Gl~i~~~~~~~~~~-~~~~~~~~~~-~~~~D~ii 64 (293)
T TIGR00745 1 AVGSLYGAYLARAG-------HDVTLLARG-EQ------LEALNQEGLRIVSLGGEFQFR-PVSAATSPEE-LPPADLVI 64 (293)
T ss_pred CchHHHHHHHHhCC-------CcEEEEecH-HH------HHHHHHCCcEEEecCCcEEEc-ccccccChhh-cCCCCEEE
Confidence 58999999999999 999999997 33 5788887765443222 2221 2345566665 67899999
Q ss_pred EccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-c--------eEEEeCcchHHHHHhcCc
Q 014739 150 FVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-S--------CCVLMGANIANEIAVEKF 220 (419)
Q Consensus 150 lavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~--------~~v~~gp~~a~e~~~g~~ 220 (419)
+|||+.+++++++.+.+.+.++++|++++||++.. +.+.+.++. + .....+|++..+.+.+
T Consensus 65 v~vKs~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~--------~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~-- 134 (293)
T TIGR00745 65 ITVKAYQTEEAAALLLPLIGKNTKVLFLQNGLGHE--------ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLG-- 134 (293)
T ss_pred EeccchhHHHHHHHhHhhcCCCCEEEEccCCCCCH--------HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccc--
Confidence 99999999999999999999999999999999863 444444442 1 1234566655443333
Q ss_pred eeEEEeecC-CHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC---cc-HHHHHHHHHHHHH
Q 014739 221 SEATVGYRD-NREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG---NN-TKAAIMRIGLREM 295 (419)
Q Consensus 221 ~~~~~~~~~-~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~---~n-~~~~l~~~~~~E~ 295 (419)
.+.++... ..+..+++.++|...++++..++|+....|.|++.|+.....+...+..++ .+ ....++...+.|+
T Consensus 135 -~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~ 213 (293)
T TIGR00745 135 -ATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEV 213 (293)
T ss_pred -cEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHH
Confidence 24555431 125678899999999999999999999999999999744433333333333 23 3568999999999
Q ss_pred HHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcC
Q 014739 296 RAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRG 375 (419)
Q Consensus 296 ~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~g 375 (419)
.+++++.|...+++.+.. .+ ......-+. ...+.++|++ +|+.+|.+..++.++++|+++|
T Consensus 214 ~~v~~a~G~~~~~~~~~~------~~--------~~~~~~~~~-~~sSm~~D~~----~gr~tEid~i~G~~v~~a~~~g 274 (293)
T TIGR00745 214 VRVARAEGVDLPDDEVEE------LV--------RAVIRMTAE-NTSSMLQDLL----RGRRTEIDAINGAVVRLAEKLG 274 (293)
T ss_pred HHHHHhCCCCCCHHHHHH------HH--------HHHHhcCCC-CCChHHHHHH----cCCcchHHHhccHHHHHHHHcC
Confidence 999999963333222211 00 011111111 2112356664 5899999999999999999999
Q ss_pred CCcCCcHHHHHHHHHhCC
Q 014739 376 WLELFPLFATVHEICVGH 393 (419)
Q Consensus 376 v~~~~P~~~~~~~~l~~~ 393 (419)
+ ++|.++.+|++++..
T Consensus 275 v--~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 275 I--DAPVNRTLYALLKAL 290 (293)
T ss_pred C--CCChHHHHHHHHHHh
Confidence 9 999999999998753
No 19
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=99.91 E-value=6.2e-24 Score=185.32 Aligned_cols=146 Identities=47% Similarity=0.718 Sum_probs=129.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCcc-chhcccCCcceeecccC--cc
Q 014739 252 QDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDS-TFFESCGVADLITTCLG--GR 328 (419)
Q Consensus 252 ~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~-~~~~~~~~~d~~~t~~~--~r 328 (419)
+|+.++|+++++||++|+++|+.+++++++|+.+++++++++||.++++++| .+++ +|++++|++|+++||++ +|
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~g--g~~~~t~~~laGlGDLi~T~~s~~sR 78 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKALG--GDPENTFFGLAGLGDLILTCTSDKSR 78 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT--SSCCGGGCSTTTHHHHHHHHHHTTSH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhC--CCCcccccccchHhhhHHHhcCCCCC
Confidence 5899999999999999999999999999999999999999999999999995 6888 99999999999999998 99
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHH
Q 014739 329 NRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYS 403 (419)
Q Consensus 329 n~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~ 403 (419)
|+++|..+++ +. .+++++.+.++.++++||...++.+.++++++++ ++|+++++|++++++.+|+++++.|
T Consensus 79 N~~~G~~l~~-g~-~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i--~~Pl~~~vy~Il~~~~~~~~~i~~l 149 (149)
T PF07479_consen 79 NRRFGKALGK-GG-KSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNI--EFPLFTAVYKILYENESPEEAIEEL 149 (149)
T ss_dssp HHHHHHHHHH-TT-S-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT---GSHHHHHHHHHHHS---HHHHHHHH
T ss_pred cHHHHHHHHc-cC-CCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHcCcCCHHHHHHcC
Confidence 9999999999 52 4788888776779999999999999999999999 9999999999999999999999865
No 20
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.91 E-value=5.4e-23 Score=193.04 Aligned_cols=278 Identities=14% Similarity=0.119 Sum_probs=200.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
+..++|++||+|.||..|+.+|.++| |.|++|||+.++ ++.+.+.|. ++..+|
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G-------~kVtV~dr~~~k------~~~f~~~Ga--------------~v~~sP 85 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAG-------YKVTVYDRTKDK------CKEFQEAGA--------------RVANSP 85 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcC-------CEEEEEeCcHHH------HHHHHHhch--------------hhhCCH
Confidence 35679999999999999999999999 999999999887 788887663 466889
Q ss_pred HHHhcCCCEEEEccCc-chHHHHHHH---HhccCCCCcEE-EEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHH
Q 014739 139 ENAVKDANMLVFVTPH-QFMEGICKR---LVGKVNGDVEA-ISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIAN 213 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl~~---l~~~l~~~tii-vs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~ 213 (419)
.|+.+++|+||.+||+ .++++++.. +...+.++... |++++ +++. +...+.+.+.. ..+..+.+|....
T Consensus 86 aeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmST-idp~--~s~ei~~~i~~---~~~~~vDAPVSGg 159 (327)
T KOG0409|consen 86 AEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMST-IDPD--TSLEIAKAISN---KGGRFVDAPVSGG 159 (327)
T ss_pred HHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccc-cCHH--HHHHHHHHHHh---CCCeEEeccccCC
Confidence 9999999999999997 677777743 33444565555 67764 5542 23333333332 2344444443322
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHH
Q 014739 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~ 293 (419)
.......+.++++++ |++.+++..++|+..|..+.+.... |....+++.+|........+++
T Consensus 160 ~~~A~~G~LtimagG-de~~~~~~~~~~~~mGk~~~~~G~~-----------------GnG~~~Kl~nnm~~g~~M~g~a 221 (327)
T KOG0409|consen 160 VKGAEEGTLTIMAGG-DEALFEAASPVFKLMGKNVVFLGGV-----------------GNGQAAKLCNNMLLGSSMVGLA 221 (327)
T ss_pred chhhhcCeEEEEecC-cHHHHHHHHHHHHHhcceEEEeccc-----------------CchHHHHHHHHHHHHHHHHHHH
Confidence 111112235578877 9999999999999999887775543 4455566778888888999999
Q ss_pred HHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014739 294 EMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 294 E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
|...++.++ |+++.++++....+ .|.++-.+.+++.+.+ ++ +.+.+..++| .||.+.+.+.+++
T Consensus 222 Eal~la~r~--GLd~~~l~eiln~G----~~~S~~~~~~~p~m~k-~d-y~p~f~~~~m--------~KDLgla~~~a~~ 285 (327)
T KOG0409|consen 222 EALALADRL--GLDAKKLLEILNTG----RCWSSMFYNPVPGMLK-GD-YNPGFALKLM--------VKDLGLALNAAES 285 (327)
T ss_pred HHHHHHHHc--CCCHHHHHHHHhcC----CcccHHHhCcCchhhc-CC-CCCcchHHHH--------HHHHHHHHHhhhc
Confidence 999999999 48998888753332 2333333444666665 43 4444443444 8899999999999
Q ss_pred cCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014739 374 RGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
.+. ++|+....+|++ ++++|.+.+++.++.
T Consensus 286 ~~~--~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~ 322 (327)
T KOG0409|consen 286 VKV--PMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRR 322 (327)
T ss_pred cCC--CCchHHHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 999 999999999988 479999999966554
No 21
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.88 E-value=1.3e-21 Score=190.83 Aligned_cols=272 Identities=12% Similarity=0.042 Sum_probs=187.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|+||+|||+|.||.+||..|+++| ++|++|+|++++ .+.+.+.| +..++++.+
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G-------~~V~v~d~~~~~------~~~~~~~g--------------~~~~~s~~~ 53 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQG-------HQLQVFDVNPQA------VDALVDKG--------------ATPAASPAQ 53 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCC-------CeEEEEcCCHHH------HHHHHHcC--------------CcccCCHHH
Confidence 469999999999999999999999 999999999876 56666543 234567777
Q ss_pred HhcCCCEEEEccCcc-hHHHHHH---HHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHH
Q 014739 141 AVKDANMLVFVTPHQ-FMEGICK---RLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIAN 213 (419)
Q Consensus 141 a~~~aDlVilavp~~-~~~~vl~---~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~ 213 (419)
++.++|+||+|+|+. .++.++. .+.+.+++++++|+++++-.. +...+.+.+.+. |. ++++..+|..+.
T Consensus 54 ~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~---~~~~l~~~l~~~-g~~~ldapV~g~~~~a~ 129 (296)
T PRK15461 54 AAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPL---QTDKLIADMQAK-GFSMMDVPVGRTSDNAI 129 (296)
T ss_pred HHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHH---HHHHHHHHHHHc-CCcEEEccCCCCHHHHH
Confidence 888999999999996 5888864 456667889999999875432 123333333332 33 234555554443
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHH
Q 014739 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~ 293 (419)
.|. .+++.++ +++.+++++++|+..+-++++.++.-..... |+.+|........++.
T Consensus 130 ---~g~--l~~~~gg-~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~-----------------Kl~~N~~~~~~~~~~~ 186 (296)
T PRK15461 130 ---TGT--LLLLAGG-TAEQVERATPILMAMGNELINAGGPGMGIRV-----------------KLINNYMSIALNALSA 186 (296)
T ss_pred ---hCc--EEEEECC-CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHH-----------------HHHHHHHHHHHHHHHH
Confidence 354 3355666 7899999999999888777777765333333 3444555556677889
Q ss_pred HHHHHHHHhcCCCCccchhcccCCcceeecccCcccH--HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHH
Q 014739 294 EMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR--KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVL 371 (419)
Q Consensus 294 E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~--~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a 371 (419)
|+..++++. |++++.+.+...-+ ...+... ...+.+.+ ++ ++.++ ......||++++.++|
T Consensus 187 Ea~~l~~~~--Gld~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~-~~-~~~~f--------~~~~~~KD~~l~~~~a 249 (296)
T PRK15461 187 EAAVLCEAL--GLSFDVALKVMSGT-----AAGKGHFTTTWPNKVLK-GD-LSPAF--------MIDLAHKDLGIALDVA 249 (296)
T ss_pred HHHHHHHHc--CCCHHHHHHHHhcC-----cccChHHHccccchhcc-CC-CCCCc--------chHHHHhhHHHHHHHH
Confidence 999999999 58998877642111 0011110 11112322 21 32221 1223478999999999
Q ss_pred HHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014739 372 SHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 372 ~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
++.|+ ++|+.+.+.+++ +++.|...+++++++
T Consensus 250 ~~~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 250 NQLHV--PMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHcCC--CChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999 999999999888 478999999999876
No 22
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.87 E-value=7.6e-21 Score=184.94 Aligned_cols=270 Identities=13% Similarity=0.053 Sum_probs=183.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||.+||..|.++| ++|++|+|++. .+.+.+.| +....++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G-------~~v~v~~~~~~-------~~~~~~~g--------------~~~~~s~~~~ 52 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG-------HQLHVTTIGPV-------ADELLSLG--------------AVSVETARQV 52 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC-------CeEEEEeCCHh-------HHHHHHcC--------------CeecCCHHHH
Confidence 58999999999999999999999 89999999763 24444433 2345677787
Q ss_pred hcCCCEEEEccCcc-hHHHHHH---HHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHH
Q 014739 142 VKDANMLVFVTPHQ-FMEGICK---RLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANE 214 (419)
Q Consensus 142 ~~~aDlVilavp~~-~~~~vl~---~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e 214 (419)
...+|+||+|||+. ++++++. .+.+.+.+++++|++++ +.+. +.+.+.+.+.+. |.. +++..+|..+.
T Consensus 53 ~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT-~~p~--~~~~~~~~~~~~-G~~~vdaPVsGg~~~a~- 127 (292)
T PRK15059 53 TEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSS-ISPI--ETKRFARQVNEL-GGDYLDAPVSGGEIGAR- 127 (292)
T ss_pred HhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCC-CCHH--HHHHHHHHHHHc-CCCEEEecCCCCHHHHh-
Confidence 88999999999984 7788763 35566678999999875 4332 123344444432 432 33444443332
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHH
Q 014739 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLRE 294 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E 294 (419)
.|.. .++.++ +++.+++++++|+..+-++++..+.-.....|+ .+|........++.|
T Consensus 128 --~g~l--~~~~gG-~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl-----------------~~N~l~~~~~~a~~E 185 (292)
T PRK15059 128 --EGTL--SIMVGG-DEAVFERVKPLFELLGKNITLVGGNGDGQTCKV-----------------ANQIIVALNIEAVSE 185 (292)
T ss_pred --cCcE--EEEEcC-CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHH-----------------HHHHHHHHHHHHHHH
Confidence 3543 355556 788999999999988877666666433333343 345555556788999
Q ss_pred HHHHHHHhcCCCCccchhcccCCcceeecccCcccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014739 295 MRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 295 ~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
+..++++. |++++++.+....+. ..+... ..++.+.+ ++ +++.+ ......||+++++++|++
T Consensus 186 a~~la~~~--Gld~~~~~~~l~~~~-----~~s~~~~~~~~~~~~-~~-~~~~f--------~l~~~~KDl~l~~~~a~~ 248 (292)
T PRK15059 186 ALLFASKA--GADPVRVRQALMGGF-----ASSRILEVHGERMIK-RT-FNPGF--------KIALHQKDLNLALQSAKA 248 (292)
T ss_pred HHHHHHHc--CCCHHHHHHHHHcCc-----ccCHHHHhhchhhhc-CC-CCCCC--------chHHHHHHHHHHHHHHHH
Confidence 99999999 589988876421110 001111 11233333 21 32211 222347899999999999
Q ss_pred cCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014739 374 RGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
.|+ ++|+.+.+.+++ +++.|...++++++.
T Consensus 249 ~g~--~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 249 LAL--NLPNTATCQELFNTCAANGGSQLDHSALVQALEL 285 (292)
T ss_pred cCC--CChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 999 999999999888 468999999999886
No 23
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.86 E-value=1.6e-20 Score=191.29 Aligned_cols=281 Identities=17% Similarity=0.194 Sum_probs=199.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc------c-CCCeEe
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK------L-GKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~------l-~~~i~~ 134 (419)
|||+|||+|.||.++|..|+++| |+|++|++++++ ++.+++ |..+.+.++.. + ..++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G-------~~V~~~d~~~~~------v~~l~~-g~~~~~e~~l~~~~~~~~~~g~l~~ 66 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG-------HEVTGVDIDQEK------VDKLNK-GKSPIYEPGLDELLAKALAAGRLRA 66 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC-------CeEEEEECCHHH------HHHhhc-CCCCCCCCCHHHHHHHhhhcCCeEE
Confidence 68999999999999999999999 999999999876 677765 33333333321 0 123677
Q ss_pred cCCHHHHhcCCCEEEEccCcc----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHH-HHHHhHhC---
Q 014739 135 DPDLENAVKDANMLVFVTPHQ----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMIS-TLISEQLG--- 200 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~-~~i~~~~g--- 200 (419)
+++++++++++|+||+|||+. ++.++++.+.+.++++++||..+ ++.+. +...+. +++++..|
T Consensus 67 ~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pg--t~~~l~~~~~~~~~g~~~ 143 (411)
T TIGR03026 67 TTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPG--TTEEVVKPILERASGLKL 143 (411)
T ss_pred ECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCC--chHHHHHHHHHhhcCCCC
Confidence 788888889999999999975 48888888988888899888765 46543 233333 44443222
Q ss_pred -CceEEEeCcchHHHHHh----cCceeEEEeecCCHHHHHHHHHHhCCCC-cEEEEcCcHHHHHHHHHHHHHHHHHHHhh
Q 014739 201 -VSCCVLMGANIANEIAV----EKFSEATVGYRDNREIAEKWVQLFSTPY-FMVTAVQDVEGVELCGTLKNVVAIAAGFV 274 (419)
Q Consensus 201 -~~~~v~~gp~~a~e~~~----g~~~~~~~~~~~~~~~~~~l~~ll~~~g-~~~~~~~di~~~e~~~al~Ni~a~~~g~~ 274 (419)
..+.+.++|.++.+... ..+..++.+ . +.+..++++++|+..+ ..++...++...+..|++.|.+
T Consensus 144 ~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~------- 214 (411)
T TIGR03026 144 GEDFYLAYNPEFLREGNAVHDLLNPDRIVGG-E-TEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTF------- 214 (411)
T ss_pred CCCceEEECCCcCCCCChhhhhcCCCEEEEe-C-CHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHH-------
Confidence 34678899987653211 223334444 5 7889999999999775 3566778888888888877764
Q ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhc
Q 014739 275 DGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQ 354 (419)
Q Consensus 275 ~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~ 354 (419)
.+.....++|+.++|+++ |+|++++.+..+.+..+ ..+.+..|..++ | .+
T Consensus 215 ----------~a~~ia~~nE~~~la~~~--GiD~~~v~~~~~~~~~i----~~~~~~pg~g~g--g--~c---------- 264 (411)
T TIGR03026 215 ----------RAVKIAFANELARICEAL--GIDVYEVIEAAGTDPRI----GFNFLNPGPGVG--G--HC---------- 264 (411)
T ss_pred ----------HHHHHHHHHHHHHHHHHh--CCCHHHHHHHhCCCCCC----CCCcCCCCCCCC--C--Cc----------
Confidence 344567899999999999 58998888765443211 011111111111 1 12
Q ss_pred CCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 014739 355 GQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407 (419)
Q Consensus 355 g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (419)
..||.++++..|++.|+ ++|+.+++.++ ++..|..+++.+.+.+
T Consensus 265 -----~~KD~~~l~~~a~~~g~--~~~l~~~~~~~--N~~~~~~~~~~~~~~l 308 (411)
T TIGR03026 265 -----IPKDPLALIYKAKELGY--NPELIEAAREI--NDSQPDYVVEKILDLL 308 (411)
T ss_pred -----hhhhHHHHHHHHHhcCC--CcHHHHHHHHH--HHHhHHHHHHHHHHHh
Confidence 26799999999999999 99999999999 5557888888887754
No 24
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.85 E-value=4.1e-20 Score=180.35 Aligned_cols=272 Identities=13% Similarity=0.137 Sum_probs=181.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+|||+|||+|.||..+|..|++.| ++|.+|+|++++ .+.+.+.+ +..++++++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g-------~~v~~~d~~~~~------~~~~~~~g--------------~~~~~~~~e 54 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAG-------YSLVVYDRNPEA------VAEVIAAG--------------AETASTAKA 54 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCC-------CeEEEEcCCHHH------HHHHHHCC--------------CeecCCHHH
Confidence 479999999999999999999999 899999998765 45555533 235567778
Q ss_pred HhcCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHH
Q 014739 141 AVKDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIAN 213 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~ 213 (419)
++.++|+||+|+|. ..++.++ +++.+.+.++++++++++.. +. +.+.+.+.+.+. |.+ +++..++..+.
T Consensus 55 ~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~-~~--~~~~l~~~~~~~-g~~~~d~pv~g~~~~a~ 130 (296)
T PRK11559 55 VAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIA-PL--ASREIAAALKAK-GIEMLDAPVSGGEPKAI 130 (296)
T ss_pred HHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCC-HH--HHHHHHHHHHHc-CCcEEEcCCCCCHHHHh
Confidence 78899999999996 5667776 45777788899999887532 21 122333333322 322 23333433222
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHH
Q 014739 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~ 293 (419)
.|.. .++.++ +.+.++++.++|+..+.++....+....+..|.+.| ........+++
T Consensus 131 ---~g~l--~i~~gg-~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n-----------------~~~~~~~~~~~ 187 (296)
T PRK11559 131 ---DGTL--SVMVGG-DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQ-----------------VIVALNIAAMS 187 (296)
T ss_pred ---hCcE--EEEECC-CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 3432 244445 688899999999988777666655434444454444 44455578899
Q ss_pred HHHHHHHHhcCCCCccchhcccCCcceeecccCcccH-HHHHHhhhccCCCCHHHHHHHHhcCCee-ehHHHHHHHHHHH
Q 014739 294 EMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKL-QGVSTAREVYEVL 371 (419)
Q Consensus 294 E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~-Eg~~~~~~v~~~a 371 (419)
|+..++++. |++++++.+....+ ...+... ..+..+.+ ++ +.. |.+. ...||+++++++|
T Consensus 188 Ea~~l~~~~--Gi~~~~~~~~l~~~-----~~~s~~~~~~~~~~~~-~d-~~~---------~f~~~~~~KDl~~~~~~a 249 (296)
T PRK11559 188 EALVLATKA--GVNPDLVYQAIRGG-----LAGSTVLDAKAPMVMD-RN-FKP---------GFRIDLHIKDLANALDTS 249 (296)
T ss_pred HHHHHHHHc--CCCHHHHHHHHhcC-----cccCHHHHhhchHhhc-CC-CCC---------CcchHHHHHHHHHHHHHH
Confidence 999999999 48888776532111 0001111 01122222 11 221 1111 2367999999999
Q ss_pred HHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhcC
Q 014739 372 SHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSERK 406 (419)
Q Consensus 372 ~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~~ 406 (419)
++.|+ ++|+.+.+++.+ +++.|...+++++++.
T Consensus 250 ~~~g~--~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 289 (296)
T PRK11559 250 HGVGA--PLPLTAAVMEMMQALKADGLGTADHSALACYYEKL 289 (296)
T ss_pred HHcCC--CChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHh
Confidence 99999 999999999988 5799999999999874
No 25
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.85 E-value=2.9e-20 Score=180.82 Aligned_cols=268 Identities=15% Similarity=0.098 Sum_probs=182.5
Q ss_pred EECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCC
Q 014739 66 VVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDA 145 (419)
Q Consensus 66 IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~a 145 (419)
|||+|.||.+||..|+++| ++|++|+|++++ .+.+.+.| +..+++++++++++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G-------~~V~v~dr~~~~------~~~l~~~g--------------~~~~~s~~~~~~~a 53 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG-------HPVRVFDLFPDA------VEEAVAAG--------------AQAAASPAEAAEGA 53 (288)
T ss_pred CCcccHhHHHHHHHHHhCC-------CeEEEEeCCHHH------HHHHHHcC--------------CeecCCHHHHHhcC
Confidence 6899999999999999999 999999998766 56666544 23566788888999
Q ss_pred CEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHHHHhc
Q 014739 146 NMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANEIAVE 218 (419)
Q Consensus 146 DlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e~~~g 218 (419)
|+||+|||+ .++++++ +++.+.+.+++++|+++ ++.++ +.+.+++.+.+. |.. +++..||..+. .|
T Consensus 54 dvVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~s-t~~p~--~~~~~~~~~~~~-g~~~vdaPv~Gg~~~a~---~g 126 (288)
T TIGR01692 54 DRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCS-TIDPD--SARKLAELAAAH-GAVFMDAPVSGGVGGAR---AG 126 (288)
T ss_pred CEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEEECC-CCCHH--HHHHHHHHHHHc-CCcEEECCCCCCHHHHh---hC
Confidence 999999998 6788888 67888888899999988 46542 234444554442 432 34445554443 35
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Q 014739 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
. ..++.++ +.+.+++++++|+..+-++.+.++.-..+..|++ +|........++.|+..+
T Consensus 127 ~--l~~~~gg-~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~-----------------~n~~~~~~~~~~~Ea~~l 186 (288)
T TIGR01692 127 T--LTFMVGG-VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKIC-----------------NNMLLGISMIGTAEAMAL 186 (288)
T ss_pred c--EEEEECC-CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence 4 3455556 7788999999999887777776664333444444 444455567789999999
Q ss_pred HHHhcCCCCccchhcccCCcceeecccCcccHHHH-H----HhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014739 299 SKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVA-E----AFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 299 a~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g-~----~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
+++. |++++++.+....+.-. +....++... . .+.+ ++ ++..+ ......||.+.+.++|++
T Consensus 187 a~~~--Gld~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~-~~-~~~~f--------~~~~~~KDl~~~~~~a~~ 252 (288)
T TIGR01692 187 GEKL--GLDPKVLFEIANTSSGR--CWSSDTYNPVPGVMPQAPAS-NG-YQGGF--------GTALMLKDLGLAQDAAKS 252 (288)
T ss_pred HHHc--CCCHHHHHHHHhcCCcc--CcHHHHhCCCcccccccccc-CC-CCCCc--------chHHHHhhHHHHHHHHHH
Confidence 9999 58998887642211000 0000000000 0 0111 11 22111 122447899999999999
Q ss_pred cCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHH
Q 014739 374 RGWLELFPLFATVHEIC-------VGHLPPSAIVEYS 403 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~ 403 (419)
.|+ ++|+.+.+.+++ +++.|...+++++
T Consensus 253 ~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 253 AGA--PTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred cCC--CChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 999 999999999988 4688999998875
No 26
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.84 E-value=5.4e-20 Score=179.13 Aligned_cols=271 Identities=15% Similarity=0.107 Sum_probs=179.4
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
||+|||+|.||..+|..|+++| ++|++|+|++++ .+.+.+.|. ...+++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-------~~V~~~dr~~~~------~~~~~~~g~--------------~~~~~~~~~~ 53 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-------YQLHVTTIGPEV------ADELLAAGA--------------VTAETARQVT 53 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-------CeEEEEcCCHHH------HHHHHHCCC--------------cccCCHHHHH
Confidence 5999999999999999999999 999999998765 566655442 2345677788
Q ss_pred cCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHH--HH
Q 014739 143 KDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANE--IA 216 (419)
Q Consensus 143 ~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e--~~ 216 (419)
.++|+||+|+|+ ..++.++ +.+.+.+++++++|++++.... +...+.+.+++. |.+ ++.+|....+ ..
T Consensus 54 ~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~---~~~~l~~~l~~~-g~~--~~~~pv~g~~~~a~ 127 (291)
T TIGR01505 54 EQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPI---ESKRFAKAVKEK-GID--YLDAPVSGGEIGAI 127 (291)
T ss_pred hcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHH---HHHHHHHHHHHc-CCC--EEecCCCCCHHHHh
Confidence 899999999997 4666665 3466677889999987753321 122333444332 322 2333432111 11
Q ss_pred hcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHH
Q 014739 217 VEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMR 296 (419)
Q Consensus 217 ~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~ 296 (419)
.+. ..++.++ +++.++++.++|+..+.++.+.++....+..|+. +|........+++|+.
T Consensus 128 ~g~--l~i~~gg-~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~-----------------~n~~~~~~~~~~~Ea~ 187 (291)
T TIGR01505 128 EGT--LSIMVGG-DQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVA-----------------NQIIVALNIEAVSEAL 187 (291)
T ss_pred cCC--EEEEecC-CHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Confidence 233 2345555 7888999999999888777666553333333433 4455566778899999
Q ss_pred HHHHHhcCCCCccchhcccCCcceeecccCcccHH-HHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcC
Q 014739 297 AFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRK-VAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRG 375 (419)
Q Consensus 297 ~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~-~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~g 375 (419)
.++++. |++++++.+...-+. ..+.... .+..+.. ++ ++..+ ...-..||++.+.+++++.|
T Consensus 188 ~l~~~~--Gid~~~~~~~l~~~~-----~~s~~~~~~~~~~~~-~~-~~~~f--------~~~~~~KDl~~~~~~a~~~g 250 (291)
T TIGR01505 188 VFASKA--GVDPVRVRQALRGGL-----AGSTVLEVKGERVID-RT-FKPGF--------RIDLHQKDLNLALDSAKAVG 250 (291)
T ss_pred HHHHHc--CCCHHHHHHHHhcCc-----ccCHHHHhhChhhhc-CC-CCCCc--------chHHHHHHHHHHHHHHHHcC
Confidence 999999 589988876422110 0011110 1122222 11 22111 11233789999999999999
Q ss_pred CCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014739 376 WLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 376 v~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
+ ++|+.+.+.+++ +++.|...++++++.
T Consensus 251 ~--~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 251 A--NLPNTATVQELFNTLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred C--CChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9 999999999888 479999999999976
No 27
>PLN02858 fructose-bisphosphate aldolase
Probab=99.82 E-value=5.2e-19 Score=201.27 Aligned_cols=271 Identities=13% Similarity=0.077 Sum_probs=195.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||+|||+|.||..||.+|+++| ++|++|||++++ ++.+.+.| +...+++.+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G-------~~v~v~dr~~~~------~~~l~~~G--------------a~~~~s~~e 56 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSG-------FKVQAFEISTPL------MEKFCELG--------------GHRCDSPAE 56 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCC-------CeEEEEcCCHHH------HHHHHHcC--------------CeecCCHHH
Confidence 368999999999999999999999 999999999876 67776644 345678889
Q ss_pred HhcCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC--C---ceEEEeCcch
Q 014739 141 AVKDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG--V---SCCVLMGANI 211 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g--~---~~~v~~gp~~ 211 (419)
+.++||+||+|+|+ .++++++ +.+.+.+.+++++|.+++ +.+. +.+.+++.+.+. | . ++++.+||..
T Consensus 57 ~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~ST-i~p~--~~~~la~~l~~~-g~~~~~lDaPVsGg~~~ 132 (1378)
T PLN02858 57 AAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRST-ILPL--QLQKLEKKLTER-KEQIFLVDAYVSKGMSD 132 (1378)
T ss_pred HHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCC-CCHH--HHHHHHHHHHhc-CCceEEEEccCcCCHHH
Confidence 89999999999997 6788886 467777888999999875 4432 233444444443 4 2 2355556655
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE-cCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHH
Q 014739 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA-VQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRI 290 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~-~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~ 290 (419)
+. .|+ ..++.++ +.+.+++++++|+..+-++++ .++. |....+|+.+|........
T Consensus 133 A~---~G~--L~imvGG-~~~~~~~~~p~l~~~g~~i~~~~G~~-----------------G~g~~~KL~nN~l~~~~~~ 189 (1378)
T PLN02858 133 LL---NGK--LMIIASG-RSDAITRAQPFLSAMCQKLYTFEGEI-----------------GAGSKVKMVNELLEGIHLV 189 (1378)
T ss_pred Hh---cCC--eEEEEcC-CHHHHHHHHHHHHHhcCceEEecCCC-----------------CHhHHHHHHHHHHHHHHHH
Confidence 54 354 3466666 789999999999988877654 3554 2233344555666667788
Q ss_pred HHHHHHHHHHHhcCCCCccchhcccCCcceeecccC-cccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHH
Q 014739 291 GLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLG-GRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVY 368 (419)
Q Consensus 291 ~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~-~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~ 368 (419)
++.|+..++++. |++++.+++....+ .. +... .....+.+ ++ +++.+. .....||++++.
T Consensus 190 a~aEAl~la~~~--Gld~~~l~~vl~~s------~g~s~~~~~~~~~~~~-~d-~~~~F~--------l~l~~KDl~la~ 251 (1378)
T PLN02858 190 ASAEAMALGVRA--GIHPWIIYDIISNA------AGSSWIFKNHVPLLLK-DD-YIEGRF--------LNVLVQNLGIVL 251 (1378)
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHhcC------CccCHHHHhhhhHhhc-CC-CCCCch--------hHHHHHHHHHHH
Confidence 999999999999 58999887642111 11 1111 12334443 32 332222 123478999999
Q ss_pred HHHHHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014739 369 EVLSHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 369 ~~a~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
++|++.|+ ++|+.+.+.+++ +++.|...++++++.
T Consensus 252 ~~A~~~g~--~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 252 DMAKSLPF--PLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred HHHHHcCC--CChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 99999999 999999999988 478999999998877
No 28
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=1.5e-18 Score=169.55 Aligned_cols=279 Identities=19% Similarity=0.213 Sum_probs=204.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-c------CCCeEe
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-L------GKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-l------~~~i~~ 134 (419)
|||+|||+|.+|...|.+|++.| |+|.++|.++++ ++.|++ |..+.|.|+.. + ..++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G-------HeVv~vDid~~K------V~~ln~-g~~PI~EpgLe~ll~~~~~~gRl~f 66 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG-------HEVVCVDIDESK------VELLNK-GISPIYEPGLEELLKENLASGRLRF 66 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC-------CeEEEEeCCHHH------HHHHhC-CCCCCcCccHHHHHHhccccCcEEE
Confidence 89999999999999999999999 999999999988 888887 66677777752 1 234889
Q ss_pred cCCHHHHhcCCCEEEEccCcc----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh-CCce
Q 014739 135 DPDLENAVKDANMLVFVTPHQ----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL-GVSC 203 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~-g~~~ 203 (419)
|+|.++++.++|++|+||++. +++++.+.+.+.+...++||.=++ +++. +...+.+.+.+.. +..+
T Consensus 67 Ttd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KST-VPvG--t~~~v~~~i~~~~~~~~f 143 (414)
T COG1004 67 TTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKST-VPVG--TTEEVRAKIREENSGKDF 143 (414)
T ss_pred EcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCC-CCCC--chHHHHHHHHhhcccCCc
Confidence 999999999999999999862 588889999999877666654332 4432 2334444444332 2357
Q ss_pred EEEeCcchHHHHH----hcCceeEEEeecCCHHHHHHHHHHhCCC---CcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhc
Q 014739 204 CVLMGANIANEIA----VEKFSEATVGYRDNREIAEKWVQLFSTP---YFMVTAVQDVEGVELCGTLKNVVAIAAGFVDG 276 (419)
Q Consensus 204 ~v~~gp~~a~e~~----~g~~~~~~~~~~~~~~~~~~l~~ll~~~---g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~ 276 (419)
.+.+.|.+.+|.. .-.|..+++|.. ++...+.+++++... ..++.. .+...+|+-|...
T Consensus 144 ~v~~NPEFLREG~Av~D~~~PdRIViG~~-~~~a~~~~~ely~~~~~~~~p~l~-t~~~~AE~IKyaa------------ 209 (414)
T COG1004 144 EVASNPEFLREGSAVYDFLYPDRIVIGVR-SERAAAVLRELYAPFLRQDVPILF-TDLREAELIKYAA------------ 209 (414)
T ss_pred eEecChHHhcCcchhhhccCCCeEEEccC-ChhHHHHHHHHHhhhhhcCCCEEE-ecchHHHHHHHHH------------
Confidence 7999999877532 234667888877 555677788887642 444433 4666777766443
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhcc---CCCCHHHHHHHHh
Q 014739 277 LEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNE---GKRSFDDLEAEML 353 (419)
Q Consensus 277 ~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g---~~~~~~~~~~~~~ 353 (419)
|...+.-..-++|+..+|++.| +|-+++.+-.|.++.+ |..+-+.| +++++
T Consensus 210 -----NafLAtKIsFiNEia~ice~~g--~D~~~V~~gIGlD~RI-----------G~~fl~aG~GyGGsCf-------- 263 (414)
T COG1004 210 -----NAFLATKISFINEIANICEKVG--ADVKQVAEGIGLDPRI-----------GNHFLNAGFGYGGSCF-------- 263 (414)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHcCCCchh-----------hHhhCCCCCCCCCcCC--------
Confidence 4555566777999999999995 7877777644444322 33322211 11564
Q ss_pred cCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 014739 354 QGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKPR 408 (419)
Q Consensus 354 ~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (419)
+||.+++++.|+++|+ +.++++++.+. ++..+..+++.+.++..
T Consensus 264 -------PKD~~AL~~~a~~~~~--~~~ll~avv~v--N~~qk~~~~~~i~~~~~ 307 (414)
T COG1004 264 -------PKDTKALIANAEELGY--DPNLLEAVVEV--NERRKDKLAEKILNHLG 307 (414)
T ss_pred -------cHhHHHHHHHHHhcCC--chHHHHHHHHH--HHHHHHHHHHHHHHhcC
Confidence 6799999999999999 99999999999 66788999999998777
No 29
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.80 E-value=2.5e-18 Score=176.83 Aligned_cols=271 Identities=12% Similarity=-0.026 Sum_probs=173.5
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..++++|+|||+|.||..||.+|+++| ++|++|||++++ ++.+.+.+... +. ..+....+
T Consensus 3 ~~~~~~IG~IGLG~MG~~mA~nL~~~G-------~~V~V~NRt~~k------~~~l~~~~~~~----Ga---~~~~~a~s 62 (493)
T PLN02350 3 SAALSRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTSK------VDETVERAKKE----GN---LPLYGFKD 62 (493)
T ss_pred CCCCCCEEEEeeHHHHHHHHHHHHhCC-------CeEEEECCCHHH------HHHHHHhhhhc----CC---cccccCCC
Confidence 345678999999999999999999999 999999999876 55555421000 00 01234577
Q ss_pred HHHHhcC---CCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcc
Q 014739 138 LENAVKD---ANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGAN 210 (419)
Q Consensus 138 ~~ea~~~---aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~ 210 (419)
+++++.. +|+||+|||+ ..++++++.+.+.+.+++++|+++|.-... .....+.+.+. |.+ ++|.+||.
T Consensus 63 ~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~---t~~~~~~l~~~-Gi~fldapVSGG~~ 138 (493)
T PLN02350 63 PEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYEN---TERRIKEAAEK-GLLYLGMGVSGGEE 138 (493)
T ss_pred HHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHH---HHHHHHHHHHc-CCeEEeCCCcCCHH
Confidence 8887765 9999999997 688999999999999999999998743221 22333333332 432 45666666
Q ss_pred hHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE------EEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHH
Q 014739 211 IANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM------VTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTK 284 (419)
Q Consensus 211 ~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~------~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~ 284 (419)
.|. .| + .++.++ +++.+++++++|+..+-+ +.+.++. |....+|+.+|..
T Consensus 139 gA~---~G-~--~im~GG-~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~-----------------GaG~~vKlv~N~i 194 (493)
T PLN02350 139 GAR---NG-P--SLMPGG-SFEAYKNIEDILEKVAAQVDDGPCVTYIGPG-----------------GAGNFVKMVHNGI 194 (493)
T ss_pred Hhc---CC-C--eEEecC-CHHHHHHHHHHHHHHhhhcCCCCcEEEeCCc-----------------CHHHHHHHHHHHH
Confidence 544 34 2 345556 789999999999877643 5555553 2233344456666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccchhcccC-CcceeecccCcccHH-HHHHhhhccCCCCHHHHHHHHhcCCeeehHH
Q 014739 285 AAIMRIGLREMRAFSKLLFSSVKDSTFFESCG-VADLITTCLGGRNRK-VAEAFAKNEGKRSFDDLEAEMLQGQKLQGVS 362 (419)
Q Consensus 285 ~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~-~~d~~~t~~~~rn~~-~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~ 362 (419)
......++.|+..++++.. |++++.+.+... +. .....+.-.. .+..+.. .+.++.....+ ...+
T Consensus 195 ~~~~m~~iaEA~~l~~~~~-Gld~~~l~~vf~~~~---~g~~~S~llei~~~~l~~-~d~~~~~f~l~--------~i~K 261 (493)
T PLN02350 195 EYGDMQLISEAYDVLKSVG-GLSNEELAEVFAEWN---KGELESFLIEITADIFSV-KDDKGDGYLVD--------KILD 261 (493)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHc---CCCccchHHHHHHHHHhh-cCCCCCCchHH--------HHHh
Confidence 6778899999999999842 488888765310 10 0011121111 1222322 11011111111 2245
Q ss_pred HHH------HHHHHHHHcCCCcCCcH-HHHHHHHHh
Q 014739 363 TAR------EVYEVLSHRGWLELFPL-FATVHEICV 391 (419)
Q Consensus 363 ~~~------~v~~~a~~~gv~~~~P~-~~~~~~~l~ 391 (419)
+++ ..+..|.+.|+ ++|+ .+++.+.+.
T Consensus 262 d~~~kGTg~w~~~~A~~lgv--~~p~i~~av~~r~~ 295 (493)
T PLN02350 262 KTGMKGTGKWTVQQAAELSV--AAPTIAASLDARYL 295 (493)
T ss_pred hhcccchHHHHHHHHHHhCC--CccHHHHHHHHHHH
Confidence 555 78889999999 9999 677776663
No 30
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.79 E-value=3.4e-18 Score=167.12 Aligned_cols=255 Identities=14% Similarity=0.057 Sum_probs=169.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||..||..|.++| ++|++|+|++++ .+.+.+.| +..+.+++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g-------~~v~v~dr~~~~------~~~~~~~g--------------~~~~~s~~~~ 53 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG-------HEVVGYDVNQEA------VDVAGKLG--------------ITARHSLEEL 53 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC-------CEEEEEECCHHH------HHHHHHCC--------------CeecCCHHHH
Confidence 58999999999999999999999 899999998765 56665533 2456677776
Q ss_pred hcC---CCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHHH
Q 014739 142 VKD---ANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIANE 214 (419)
Q Consensus 142 ~~~---aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~e 214 (419)
+++ +|+||+|+|+. .++++++.+.+.+++++++|++++.-.. +...+.+.+.+. |. ++++..+|..+.
T Consensus 54 ~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~---~~~~~~~~~~~~-g~~~vdapV~G~~~~a~- 128 (299)
T PRK12490 54 VSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYK---DDLRRAEELAER-GIHYVDCGTSGGVWGLR- 128 (299)
T ss_pred HHhCCCCCEEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCch---hHHHHHHHHHHc-CCeEEeCCCCCCHHHHh-
Confidence 655 69999999996 9999999999888889999999764332 123333444332 33 234445544333
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCc---EEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHH
Q 014739 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYF---MVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIG 291 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~---~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~ 291 (419)
.|. .++.++ +++.+++++++|+..+- ++++.++.-. ...+|+.+|........+
T Consensus 129 --~g~---~~~~gG-~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~-----------------a~~~Kl~~n~~~~~~~~~ 185 (299)
T PRK12490 129 --NGY---CLMVGG-DKEIYDRLEPVFKALAPEGPGYVHAGPVGS-----------------GHFLKMVHNGIEYGMMQA 185 (299)
T ss_pred --cCC---eEEecC-CHHHHHHHHHHHHHhcCcCCcEEEECCcCH-----------------HHHHHHHHHHHHHHHHHH
Confidence 343 345555 78889999999998775 4555565422 233344456666778899
Q ss_pred HHHHHHHHHHhcCCCCccchhcccCCcceeecc-cCcccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHH---HH
Q 014739 292 LREMRAFSKLLFSSVKDSTFFESCGVADLITTC-LGGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTA---RE 366 (419)
Q Consensus 292 ~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~-~~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~---~~ 366 (419)
+.|+..++++.|.+++++++++.-.. .+ ..+... .....+.. + .....+ + ...||. +.
T Consensus 186 ~aEa~~l~~~~g~~ld~~~~~~~~~~-----~~~~~s~~l~~~~~~~~~-~--~~~~~l-~--------~~~KD~~~~~l 248 (299)
T PRK12490 186 YAEGLELLDKSDFDFDVEDVARLWRN-----GSVIRSWLLDLTVKALAE-D--PKLAGI-K--------GYVNDSGEGRW 248 (299)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHcC-----CcHHHHHHHHHHHHHHhh-C--CChhhh-h--------HHHHhcCcHHH
Confidence 99999999999423788888764211 11 011111 11233332 2 111111 1 224565 68
Q ss_pred HHHHHHHcCCCcCCcHHHHHH-HHH
Q 014739 367 VYEVLSHRGWLELFPLFATVH-EIC 390 (419)
Q Consensus 367 v~~~a~~~gv~~~~P~~~~~~-~~l 390 (419)
+++.|++.|+ ++|+...+. .++
T Consensus 249 ~~~~A~~~g~--~~P~~~~a~~~~~ 271 (299)
T PRK12490 249 TVEEAIELAV--AAPVIAASLFMRF 271 (299)
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHH
Confidence 9999999999 999999984 444
No 31
>PLN02858 fructose-bisphosphate aldolase
Probab=99.79 E-value=4.7e-18 Score=193.52 Aligned_cols=274 Identities=12% Similarity=0.040 Sum_probs=189.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+++|+|||+|.||.+||..|+++| ++|++|+|++++ .+.+...| ....++++
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G-------~~V~v~dr~~~~------~~~l~~~G--------------a~~~~s~~ 375 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSN-------FSVCGYDVYKPT------LVRFENAG--------------GLAGNSPA 375 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcC--------------CeecCCHH
Confidence 3578999999999999999999999 999999998766 56666543 23456788
Q ss_pred HHhcCCCEEEEccC-cchHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhH-hCC---ceEEEeCcch
Q 014739 140 NAVKDANMLVFVTP-HQFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQ-LGV---SCCVLMGANI 211 (419)
Q Consensus 140 ea~~~aDlVilavp-~~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~-~g~---~~~v~~gp~~ 211 (419)
+++.++|+||+||| +.++++++ ..+.+.+.+++++|.+++ +.+. +.+.+.+.+.+. .|. ++++..||..
T Consensus 376 e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~ST-vsP~--~~~~la~~l~~~g~g~~~lDAPVsGg~~~ 452 (1378)
T PLN02858 376 EVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSST-VSPG--FVIQLERRLENEGRDIKLVDAPVSGGVKR 452 (1378)
T ss_pred HHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCC-CCHH--HHHHHHHHHHhhCCCcEEEEccCCCChhh
Confidence 88899999999999 57888887 346677788999999876 4332 233444444442 132 2345555554
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE-cCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHH
Q 014739 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA-VQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRI 290 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~-~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~ 290 (419)
+. .|.. .++.++ +++.+++++++|+..+-++++ .++.-.....|++ +|........
T Consensus 453 A~---~G~L--~imvgG-~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~-----------------nN~l~~~~~a 509 (1378)
T PLN02858 453 AA---MGTL--TIMASG-TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMV-----------------NQLLAGVHIA 509 (1378)
T ss_pred hh---cCCc--eEEEEC-CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHH-----------------HHHHHHHHHH
Confidence 44 3543 456666 788999999999988766655 4555444444444 4455556688
Q ss_pred HHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHH
Q 014739 291 GLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYE 369 (419)
Q Consensus 291 ~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~ 369 (419)
++.|+..++++. |++++++++...-+. ..+..+ ...+.+.. ++ +++.+ ......||++++++
T Consensus 510 a~aEal~la~k~--Gld~~~l~evl~~s~-----g~s~~~~~~~~~~l~-~d-~~~~f--------~l~l~~KDl~l~~~ 572 (1378)
T PLN02858 510 SAAEAMAFGARL--GLNTRKLFDIISNAG-----GTSWMFENRVPHMLD-ND-YTPYS--------ALDIFVKDLGIVSR 572 (1378)
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHhhc-----ccChhhhhccchhhc-CC-CCCCc--------hhHHHHHHHHHHHH
Confidence 999999999999 589988876421110 001111 11223332 21 33221 12234789999999
Q ss_pred HHHHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014739 370 VLSHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 370 ~a~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
.+++.|+ ++|+.+.+.+++ +++.|..+++++++.
T Consensus 573 ~a~~~g~--~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 573 EGSSRKI--PLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHcCC--CChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999 999999999888 468999999999876
No 32
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.78 E-value=1e-17 Score=163.84 Aligned_cols=274 Identities=12% Similarity=0.059 Sum_probs=177.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||.++|..|+++| ++|++|+|++++ ++.+.+.| +..+++++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g-------~~v~v~dr~~~~------~~~~~~~g--------------~~~~~~~~e~ 53 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG-------HEVVGYDRNPEA------VEALAEEG--------------ATGADSLEEL 53 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC-------CeEEEEECCHHH------HHHHHHCC--------------CeecCCHHHH
Confidence 68999999999999999999999 999999999866 56665543 3456677776
Q ss_pred hcC---CCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHH
Q 014739 142 VKD---ANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANE 214 (419)
Q Consensus 142 ~~~---aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e 214 (419)
+.. +|+||+++|+. .++++++.+.+.+++++++|+++++-... ...+.+.+++. |.. +++..||..+.
T Consensus 54 ~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~---~~~~~~~~~~~-g~~~~dapvsG~~~~a~- 128 (301)
T PRK09599 54 VAKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKD---DIRRAELLAEK-GIHFVDVGTSGGVWGLE- 128 (301)
T ss_pred HhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhH---HHHHHHHHHHc-CCEEEeCCCCcCHHHHh-
Confidence 654 69999999986 88999999988888999999998754321 23333444332 432 34444544433
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCc----EEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHH
Q 014739 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYF----MVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRI 290 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~----~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~ 290 (419)
.| . .++.++ +++.+++++++|+..+- ++.+.+++-.....| +.+|........
T Consensus 129 --~g-~--~~~~gG-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~K-----------------l~~n~l~~~~~~ 185 (301)
T PRK09599 129 --RG-Y--CLMIGG-DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVK-----------------MVHNGIEYGMMQ 185 (301)
T ss_pred --cC-C--eEEecC-CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHH-----------------HHHHHHHHHHHH
Confidence 34 2 345556 78899999999988776 566666643223333 334555566788
Q ss_pred HHHHHHHHHHHhcCCCCccchhcccCCcceeeccc-CcccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHH
Q 014739 291 GLREMRAFSKLLFSSVKDSTFFESCGVADLITTCL-GGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVY 368 (419)
Q Consensus 291 ~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~-~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~ 368 (419)
++.|...++++.+.|++++++++.-.. .|. .+.-. ...+.+.+ . ..++.+ +.+ ..-.++.+.++
T Consensus 186 ~~aEa~~l~~~~~~gld~~~~~~~~~~-----~~~~~s~~l~~~~~~~~~-~--~~~~~~-~~~-----~kd~~~~~~~~ 251 (301)
T PRK09599 186 AYAEGFELLEASRFDLDLAAVAEVWRR-----GSVIRSWLLDLTADALAE-D--PKLDEI-SGY-----VEDSGEGRWTV 251 (301)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHhC-----CcHHHHHHHHHHHHHHhc-C--CCHHHH-HHH-----HHhhCcHHHHH
Confidence 899999999992225899888764211 111 11111 12333322 1 112211 010 00033458899
Q ss_pred HHHHHcCCCcCCcHHHH-HHHHH---hCCCCHHHHHHHHhcC
Q 014739 369 EVLSHRGWLELFPLFAT-VHEIC---VGHLPPSAIVEYSERK 406 (419)
Q Consensus 369 ~~a~~~gv~~~~P~~~~-~~~~l---~~~~~~~~~~~~~~~~ 406 (419)
+.|.+.|+ ++|.... ++..+ .....+...++-+++.
T Consensus 252 ~~A~~~~~--~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~ 291 (301)
T PRK09599 252 EEAIDLAV--PAPVIAAALFMRFRSRQEDSFADKVVAALRNG 291 (301)
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHh
Confidence 99999999 9999999 44323 3445566666666554
No 33
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.76 E-value=6.4e-17 Score=158.03 Aligned_cols=275 Identities=10% Similarity=0.049 Sum_probs=174.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH-
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN- 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e- 140 (419)
|||+|||+|.||+++|..|+++| ++|.+|+|++++ ++.+.+.+.. ...++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g-------~~V~~~dr~~~~------~~~l~~~g~~--------------~~~s~~~~ 53 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG-------HDCVGYDHDQDA------VKAMKEDRTT--------------GVANLREL 53 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHHcCCc--------------ccCCHHHH
Confidence 68999999999999999999999 999999999876 6666664421 2234444
Q ss_pred --HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHHH
Q 014739 141 --AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANEI 215 (419)
Q Consensus 141 --a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e~ 215 (419)
.+..+|+||+|||+..++++++++.+.+.++++||+++++.... .....+.+.+ .|.+ +.+..|+..+.
T Consensus 54 ~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~g~ivid~st~~~~~---t~~~~~~~~~-~g~~~vda~vsGg~~~a~-- 127 (298)
T TIGR00872 54 SQRLSAPRVVWVMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYKD---SLRRYKLLKE-KGIHLLDCGTSGGVWGRE-- 127 (298)
T ss_pred HhhcCCCCEEEEEcCchHHHHHHHHHHhhCCCCCEEEECCCCCccc---HHHHHHHHHh-cCCeEEecCCCCCHHHHh--
Confidence 34568999999999999999999999999999999998865432 2222233332 1332 23444443333
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCc---EEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHH
Q 014739 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYF---MVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGL 292 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~---~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~ 292 (419)
.| + .++.++ +.+.+++++++|+..+- .+.+..+.-.....|. .+|........++
T Consensus 128 -~G-~--~~~~gG-~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~-----------------~~n~l~~~~~~~~ 185 (298)
T TIGR00872 128 -RG-Y--CFMIGG-DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKM-----------------VHNGIEYGMMAAI 185 (298)
T ss_pred -cC-C--eeeeCC-CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHH-----------------HHHHHHHHHHHHH
Confidence 34 2 344555 78889999999886653 2444454422233333 3455556678899
Q ss_pred HHHHHHHHHhcCCCCccchhcccCCcceeeccc-CcccHHH-HHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHH
Q 014739 293 REMRAFSKLLFSSVKDSTFFESCGVADLITTCL-GGRNRKV-AEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 370 (419)
Q Consensus 293 ~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~-~~rn~~~-g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~ 370 (419)
.|...++++.|.+++++++.+.-.- .|. .+.-... ...+.+ . ..+..+... .....+.+.++..
T Consensus 186 aE~~~l~~~~g~~ld~~~~~~i~~~-----g~~~~s~~l~~~~~~~~~-~--~~~~~~~~~------~~~~~~~r~~v~~ 251 (298)
T TIGR00872 186 AEGFEILRNSQFDFDIPEVARVWRR-----GSVIRSWLLDLTAIAFRE-S--PDLAEFSGR------VSDSGEGRWTVIA 251 (298)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHcC-----CchhHhHHHHHHHHHHhc-C--CcHHHHHHH------HHhhccHHHHHHH
Confidence 9999999998655788877654111 111 1111111 222222 2 122222211 1112344678889
Q ss_pred HHHcCCCcCCcHHHHHH--HHHhCC--CCHHHHHHHHhcCC
Q 014739 371 LSHRGWLELFPLFATVH--EICVGH--LPPSAIVEYSERKP 407 (419)
Q Consensus 371 a~~~gv~~~~P~~~~~~--~~l~~~--~~~~~~~~~~~~~~ 407 (419)
|.+.|+ ++|.+.... ...... .-|..+++-.|+++
T Consensus 252 a~~~g~--p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~f 290 (298)
T TIGR00872 252 AIDLGV--PAPVIATSLQSRFASRDLDDFANKVLAALRKEF 290 (298)
T ss_pred HHHhCC--CHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhh
Confidence 999999 999997733 222232 44788888888764
No 34
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.74 E-value=8.1e-17 Score=164.12 Aligned_cols=278 Identities=9% Similarity=0.053 Sum_probs=184.8
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-c--CCCeEec
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-L--GKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-l--~~~i~~~ 135 (419)
..+|||+|||+|.||..+|..|++ | ++|++||+++++ ++.+++ |..+.+.++.. + ...+.++
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la~-~-------~~V~g~D~~~~~------ve~l~~-G~~~~~e~~~~~l~~~g~l~~t 68 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFGK-S-------RQVVGFDVNKKR------ILELKN-GVDVNLETTEEELREARYLKFT 68 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHhc-C-------CEEEEEeCCHHH------HHHHHC-cCCCCCCCCHHHHHhhCCeeEE
Confidence 345899999999999999999887 6 899999999887 788884 54332222211 1 1234566
Q ss_pred CCHHHHhcCCCEEEEccCcc----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcc-cHHHHHHhHhC----
Q 014739 136 PDLENAVKDANMLVFVTPHQ----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPC-MISTLISEQLG---- 200 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~-~~~~~i~~~~g---- 200 (419)
++.+ ++.+||++|+|||+. ++..+.+.|.+.++++++||..++ +.+. +.+ .....+.+..|
T Consensus 69 ~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST-v~pg--tt~~~~~~~l~~~~g~~~~ 144 (425)
T PRK15182 69 SEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST-VYPG--CTEEECVPILARMSGMTFN 144 (425)
T ss_pred eCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC-CCCc--chHHHHHHHHHhccCCCcC
Confidence 6665 588999999999963 455556788899999999888765 5543 222 23344443223
Q ss_pred CceEEEeCcchHHHHH----hcCceeEEEeecCCHHHHHHHHHHhCCCC-cEEEEcCcHHHHHHHHHHHHHHHHHHHhhh
Q 014739 201 VSCCVLMGANIANEIA----VEKFSEATVGYRDNREIAEKWVQLFSTPY-FMVTAVQDVEGVELCGTLKNVVAIAAGFVD 275 (419)
Q Consensus 201 ~~~~v~~gp~~a~e~~----~g~~~~~~~~~~~~~~~~~~l~~ll~~~g-~~~~~~~di~~~e~~~al~Ni~a~~~g~~~ 275 (419)
..+.+...|....+.. .+.+.. ++++. +++..+.+.++++... .......++...|..|.+.|
T Consensus 145 ~~~~~~~~PE~v~~G~a~~~~~~~~r-iv~G~-~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N---------- 212 (425)
T PRK15182 145 QDFYVGYSPERINPGDKKHRLTNIKK-ITSGS-TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIEN---------- 212 (425)
T ss_pred CCeeEeeCCCcCCCCcccccccCCCe-EEECC-CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHH----------
Confidence 2344444554432110 123333 34444 6777778888887542 12344566777777665544
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcC
Q 014739 276 GLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQG 355 (419)
Q Consensus 276 ~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g 355 (419)
.+.++....++|+..+|+++ |+|.+++.+.++.... ...+..|. ++ | .++
T Consensus 213 -------~~~av~Ia~~NE~a~lae~~--GiD~~~v~~a~~~~~~------~~~~~pG~-vG--G--~Cl---------- 262 (425)
T PRK15182 213 -------TQRDLNIALVNELAIIFNRL--NIDTEAVLRAAGSKWN------FLPFRPGL-VG--G--HCI---------- 262 (425)
T ss_pred -------HHHHHHHHHHHHHHHHHHHh--CcCHHHHHHHhcCCCC------cccCCCCc-cc--c--ccc----------
Confidence 55667788999999999999 4898888776443311 11122344 43 3 454
Q ss_pred CeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014739 356 QKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 356 ~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
.+|..++...++++|+ .+++.+++.++ ++..|..+++.+.+.
T Consensus 263 -----pkD~~~L~~~a~~~g~--~~~l~~~a~~i--N~~~~~~v~~~~~~~ 304 (425)
T PRK15182 263 -----GVDPYYLTHKSQGIGY--YPEIILAGRRL--NDNMGNYVSEQLIKA 304 (425)
T ss_pred -----cccHHHHHHHHHhcCC--CcHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4577788999999999 89999999999 556888888888764
No 35
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.74 E-value=3e-17 Score=168.64 Aligned_cols=263 Identities=16% Similarity=0.068 Sum_probs=168.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|++|+|||+|.||++||..|+++| ++|++|+|++++ ++.+.+.+.+. + ..+..++++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G-------~~V~v~dr~~~~------~~~l~~~~~~~----g----~~i~~~~s~~e 59 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRG-------FKISVYNRTYEK------TEEFVKKAKEG----N----TRVKGYHTLEE 59 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCC-------CeEEEEeCCHHH------HHHHHHhhhhc----C----CcceecCCHHH
Confidence 568999999999999999999999 999999999876 66666532110 0 02345678888
Q ss_pred Hhc---CCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHH
Q 014739 141 AVK---DANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIAN 213 (419)
Q Consensus 141 a~~---~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~ 213 (419)
++. ++|+||+++++ ..++++++++.+.+.++++||+++|+.... + ....+.+.+. |.+ +.+.+|+..|.
T Consensus 60 ~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~d--t-~~r~~~l~~~-Gi~fldapVSGG~~gA~ 135 (470)
T PTZ00142 60 LVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLN--T-ERRIKRCEEK-GILYLGMGVSGGEEGAR 135 (470)
T ss_pred HHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHH--H-HHHHHHHHHc-CCeEEcCCCCCCHHHHh
Confidence 775 48999999775 789999999999999999999999976532 1 2222333322 432 45566665554
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE------EEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHH
Q 014739 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM------VTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAI 287 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~------~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l 287 (419)
.| + .++.++ +.+..++++++|+..+-+ +.+.++. |....+|+.+|.....
T Consensus 136 ---~G-~--~lm~GG-~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~-----------------GaGh~vKmvhN~ie~~ 191 (470)
T PTZ00142 136 ---YG-P--SLMPGG-NKEAYDHVKDILEKCSAKVGDSPCVTYVGPG-----------------SSGHYVKMVHNGIEYG 191 (470)
T ss_pred ---cC-C--EEEEeC-CHHHHHHHHHHHHHHhhhcCCCCeEEEECCC-----------------CHHHHHHHHhHHHHHH
Confidence 34 2 355555 789999999999886655 4444443 2223334455666667
Q ss_pred HHHHHHHHHHHHH-HhcCCCCccchhcccC-CcceeecccCcccHHH-HHHhhhc---cCCCCHHHHHHHHhcCCeeehH
Q 014739 288 MRIGLREMRAFSK-LLFSSVKDSTFFESCG-VADLITTCLGGRNRKV-AEAFAKN---EGKRSFDDLEAEMLQGQKLQGV 361 (419)
Q Consensus 288 ~~~~~~E~~~la~-a~g~g~~~~~~~~~~~-~~d~~~t~~~~rn~~~-g~~l~~~---g~~~~~~~~~~~~~~g~~~Eg~ 361 (419)
+.+++.|+..+++ +. |++++++.+... +. .....+.-... +.-+.++ |++..++.+... .+++-+|.
T Consensus 192 ~m~~iaEa~~l~~~~~--gl~~~~l~~v~~~w~---~g~~~S~l~ei~~~~~~~~d~~~~~~~l~~i~d~--~~~~gtg~ 264 (470)
T PTZ00142 192 DMQLISESYKLMKHIL--GMSNEELSEVFNKWN---EGILNSYLIEITAKILAKKDDLGEEHLVDKILDI--AGSKGTGK 264 (470)
T ss_pred HHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHc---CCCccCHHHHHHHHHhhcccccCCCcchhhhcCc--ccCCchHH
Confidence 8899999999998 56 588887765310 00 00011111111 2222221 101234443322 35566777
Q ss_pred HHHHHHHHHHHHcCCCcCCcHHHH
Q 014739 362 STAREVYEVLSHRGWLELFPLFAT 385 (419)
Q Consensus 362 ~~~~~v~~~a~~~gv~~~~P~~~~ 385 (419)
+++. .|-++|+ +.|++..
T Consensus 265 wt~~----~a~~~~v--~~p~i~~ 282 (470)
T PTZ00142 265 WTVQ----EALERGI--PVPTMAA 282 (470)
T ss_pred hHHH----HHHHcCC--CchHHHH
Confidence 7744 4446788 9998865
No 36
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.73 E-value=1.5e-16 Score=162.06 Aligned_cols=274 Identities=12% Similarity=0.108 Sum_probs=178.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-c------CCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-L------GKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-l------~~~ 131 (419)
|.+|||+|||+|.||.++|..|+++| ++|++||+++++ ++.++... .+.+.++.. + ...
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G-------~~V~~~D~~~~~------v~~l~~g~-~~~~e~~l~~~l~~~~~~g~ 66 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQ-------KQVIGVDINQHA------VDTINRGE-IHIVEPDLDMVVKTAVEGGY 66 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCC-------CEEEEEeCCHHH------HHHHHCCC-CCcCCCCHHHHHHHHhhcCc
Confidence 45789999999999999999999999 999999999877 67776533 222222221 0 112
Q ss_pred eEecCCHHHHhcCCCEEEEccCc----------chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh-C
Q 014739 132 VVADPDLENAVKDANMLVFVTPH----------QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL-G 200 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~----------~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~-g 200 (419)
..++++ ..++|+||+|||+ ..+.++++.+.++++++++||..++ +++. +.+.+...+.+.. +
T Consensus 67 l~~~~~----~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST-v~pg--tt~~~~~~l~~~~~~ 139 (415)
T PRK11064 67 LRATTT----PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST-SPVG--ATEQMAEWLAEARPD 139 (415)
T ss_pred eeeecc----cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC-CCCC--HHHHHHHHHHHhccC
Confidence 334433 3479999999997 4888888999999999999988764 4432 2344444444321 0
Q ss_pred ----------CceEEEeCcchHHH---H-HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHH
Q 014739 201 ----------VSCCVLMGANIANE---I-AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNV 266 (419)
Q Consensus 201 ----------~~~~v~~gp~~a~e---~-~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni 266 (419)
..+.+...|....+ . ..+.+.. ++++. +.+..++++++|+..+-.+....++...|..|+..|
T Consensus 140 ~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~-vvgG~-~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N- 216 (415)
T PRK11064 140 LTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDR-VIGGM-TPVCSARASELYKIFLEGECVVTNSRTAEMCKLTEN- 216 (415)
T ss_pred CcccccccCCCCeEEEECCCccCCCChhhhhcCCCE-EEEeC-CHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHH-
Confidence 12445666644321 0 1233443 44665 788899999999876544445567777777675544
Q ss_pred HHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHH
Q 014739 267 VAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFD 346 (419)
Q Consensus 267 ~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~ 346 (419)
...+.....++|+..+|+++ |+|++.+.+.++...-+ .....|.-++ | .++
T Consensus 217 ----------------~~~a~~ia~~nE~~~lae~~--GiD~~~v~~~~~~~~ri------~~l~pG~G~G--G--~Cl- 267 (415)
T PRK11064 217 ----------------SFRDVNIAFANELSLICADQ--GINVWELIRLANRHPRV------NILQPGPGVG--G--HCI- 267 (415)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHhccCCCc------ccCCCCCCCC--C--ccc-
Confidence 45567788999999999999 48988887765543211 0111232222 2 453
Q ss_pred HHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014739 347 DLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 347 ~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
.+|..++ +.+.+. ..++.+++.++ ++..|..+++.+.+.
T Consensus 268 --------------pkD~~~L---~~~~~~--~~~l~~~a~~~--N~~~~~~v~~~~~~~ 306 (415)
T PRK11064 268 --------------AVDPWFI---VAQNPQ--QARLIRTAREV--NDGKPHWVIDQVKAA 306 (415)
T ss_pred --------------cccHHHH---HHhcCC--ccHHHHHHHHH--HHHhHHHHHHHHHHH
Confidence 2344444 334565 78889988888 555777777776653
No 37
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.72 E-value=3.9e-16 Score=160.60 Aligned_cols=285 Identities=16% Similarity=0.192 Sum_probs=191.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-c-----CCCeEe
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-L-----GKNVVA 134 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-l-----~~~i~~ 134 (419)
||||+|||+|.+|..+|..|+++|+ .++|+++|.++++ ++.+++.+... +.++.. + ..++.+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~-----g~~V~gvD~~~~~------v~~l~~g~~~~-~e~gl~ell~~~~~~~l~~ 68 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCP-----DIEVVVVDISVPR------IDAWNSDQLPI-YEPGLDEVVKQCRGKNLFF 68 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-----CCeEEEEECCHHH------HHHHHcCCCcc-CCCCHHHHHHHhhcCCEEE
Confidence 6899999999999999999999851 1779999999887 88888755322 223321 1 224788
Q ss_pred cCCHHHHhcCCCEEEEccCc--c-------------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh
Q 014739 135 DPDLENAVKDANMLVFVTPH--Q-------------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL 199 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~--~-------------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~ 199 (419)
+++.++++.++|++|+|||+ . .++++++.|.++++++++||.-+. +.+. +.+.+.+.+.+..
T Consensus 69 t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST-vp~G--tt~~~~~~l~~~~ 145 (473)
T PLN02353 69 STDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVK--TAEAIEKILTHNS 145 (473)
T ss_pred EcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC-CCCC--hHHHHHHHHHhhC
Confidence 89988789999999999963 1 688889999999998888775543 3332 2334444444422
Q ss_pred -CCceEEEeCcchHHHHH----hcCceeEEEeecCC---HHHHHHHHHHhCCCC-cEEEEcCcHHHHHHHHHHHHHHHHH
Q 014739 200 -GVSCCVLMGANIANEIA----VEKFSEATVGYRDN---REIAEKWVQLFSTPY-FMVTAVQDVEGVELCGTLKNVVAIA 270 (419)
Q Consensus 200 -g~~~~v~~gp~~a~e~~----~g~~~~~~~~~~~~---~~~~~~l~~ll~~~g-~~~~~~~di~~~e~~~al~Ni~a~~ 270 (419)
|..+.+.+.|.+..+.. .-.+..+++|+..+ .+..+++.++++..- -......++..+|+.|...|
T Consensus 146 ~g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN----- 220 (473)
T PLN02353 146 KGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAAN----- 220 (473)
T ss_pred CCCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHH-----
Confidence 34567778887654311 12344556676512 335677888877542 12334578888888886655
Q ss_pred HHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHH
Q 014739 271 AGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEA 350 (419)
Q Consensus 271 ~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~ 350 (419)
...++-...++|+.++|+++| +|..++.+.++....+ +......|..++ | .++
T Consensus 221 ------------~~ra~~Iaf~NEla~lce~~g--iD~~eV~~~~~~d~ri----g~~~l~PG~G~G--G--~Cl----- 273 (473)
T PLN02353 221 ------------AFLAQRISSVNAMSALCEATG--ADVSQVSHAVGKDSRI----GPKFLNASVGFG--G--SCF----- 273 (473)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHhCCCCcC----CCCCCCCCCCCC--C--cch-----
Confidence 445666788999999999994 8887777655444221 001111222222 2 454
Q ss_pred HHhcCCeeehHHHHHHHHHHHHHcCCCcC--CcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014739 351 EMLQGQKLQGVSTAREVYEVLSHRGWLEL--FPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 351 ~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~--~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
.+|..++...++++|+ + .++.+.+.++ ++..|..+++.+...
T Consensus 274 ----------pkD~~~L~~~a~~~g~--~~~~~l~~~~~~i--N~~~~~~vv~~~~~~ 317 (473)
T PLN02353 274 ----------QKDILNLVYICECNGL--PEVAEYWKQVIKM--NDYQKSRFVNRVVSS 317 (473)
T ss_pred ----------hhhHHHHHHHHHHcCC--chHHHHHHHHHHH--HHhhHHHHHHHHHHH
Confidence 4677888999999998 6 7788888877 455778888887764
No 38
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.71 E-value=7.5e-16 Score=155.28 Aligned_cols=270 Identities=16% Similarity=0.145 Sum_probs=171.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-----cCCCeEecC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-----LGKNVVADP 136 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-----l~~~i~~~~ 136 (419)
|||+|||+|.||..+|..|+. | |+|++||+++++ ++.+++ |..+.+.++.. -...+..+.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G-------~~VigvD~d~~k------v~~l~~-g~~~~~e~~l~~~l~~~~~~l~~t~ 65 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N-------HEVVALDILPSR------VAMLND-RISPIVDKEIQQFLQSDKIHFNATL 65 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C-------CcEEEEECCHHH------HHHHHc-CCCCCCCcCHHHHHHhCCCcEEEec
Confidence 689999999999999988885 8 999999999877 677776 33222323221 012344556
Q ss_pred CHHHHhcCCCEEEEccCcc-----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEE
Q 014739 137 DLENAVKDANMLVFVTPHQ-----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCV 205 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v 205 (419)
++++++.++|+||+|||+. +++++++.+.+ ++++++||..++ +.+. +.+.+.+.+.+ ..+
T Consensus 66 ~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~ST-v~pg--tt~~l~~~~~~-----~~v 136 (388)
T PRK15057 66 DKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKST-VPVG--FTAAMHKKYRT-----ENI 136 (388)
T ss_pred chhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeee-cCCc--hHHHHHHHhhc-----CcE
Confidence 6777788999999999964 67788888877 678888887764 4432 22222222221 234
Q ss_pred EeCcchHHHHH----hcCceeEEEeecCCHHHHHHHHHHhCCC--CcEEE-EcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Q 014739 206 LMGANIANEIA----VEKFSEATVGYRDNREIAEKWVQLFSTP--YFMVT-AVQDVEGVELCGTLKNVVAIAAGFVDGLE 278 (419)
Q Consensus 206 ~~gp~~a~e~~----~g~~~~~~~~~~~~~~~~~~l~~ll~~~--g~~~~-~~~di~~~e~~~al~Ni~a~~~g~~~~~~ 278 (419)
..+|.++.+.. .-.+..++.|+ +++.++++.++|... +-.+. +..++...|..|...|
T Consensus 137 ~~~PE~l~~G~a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N------------- 201 (388)
T PRK15057 137 IFSPEFLREGKALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFAN------------- 201 (388)
T ss_pred EECcccccCCcccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHH-------------
Confidence 45676654210 01233344544 456677788777431 11122 3567777777775544
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCee
Q 014739 279 MGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKL 358 (419)
Q Consensus 279 ~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~ 358 (419)
.+.+.....++|+..+|+++ |+|.+.+.+..+....+. ....+.|.-++ | .++
T Consensus 202 ----~~~a~~Ia~~NE~a~lae~~--GiD~~eV~~a~~~d~ri~----~~~l~pG~G~G--G--~Cl------------- 254 (388)
T PRK15057 202 ----TYLAMRVAYFNELDSYAESL--GLNTRQIIEGVCLDPRIG----NHYNNPSFGYG--G--YCL------------- 254 (388)
T ss_pred ----HHHHHHHHHHHHHHHHHHHh--CcCHHHHHHHhcCCCCCC----CccCCCCCCCC--C--cCh-------------
Confidence 55667788999999999999 489888877655442211 11111233232 3 564
Q ss_pred ehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014739 359 QGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 359 Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
.+|..++...+ .++ ++|+.+++.++ ++..|+.+++.+.+
T Consensus 255 --pkD~~~L~~~~--~~~--~~~l~~~~~~~--N~~~~~~~~~~~~~ 293 (388)
T PRK15057 255 --PKDTKQLLANY--QSV--PNNLISAIVDA--NRTRKDFIADAILS 293 (388)
T ss_pred --hhhHHHHHHhc--cCC--CcHHHHHHHHH--HHHhHHHHHHHHHH
Confidence 34555554444 566 78999999998 55688888888876
No 39
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.71 E-value=1.6e-15 Score=145.68 Aligned_cols=258 Identities=13% Similarity=0.108 Sum_probs=160.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEE-ecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMW-VFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~-~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|+||++|+..|.++|+..+ .+|++| +|++++ .+.+.+.| +..++++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~---~~i~v~~~r~~~~------~~~~~~~g--------------~~~~~~~~e 57 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPP---SRISTADDSNPAR------RDVFQSLG--------------VKTAASNTE 57 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCc---ceEEEEeCCCHHH------HHHHHHcC--------------CEEeCChHH
Confidence 789999999999999999999981000 288888 887655 45554433 345567777
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCc
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKF 220 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~ 220 (419)
++.++|+||+|+|+++++++++++.+.+.++++||++++|+.. +.+.+..+....+...|+.+..++.+.
T Consensus 58 ~~~~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~---------~~l~~~~~~~~vvr~mP~~~~~~~~~~- 127 (266)
T PLN02688 58 VVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITL---------ADLQEWAGGRRVVRVMPNTPCLVGEAA- 127 (266)
T ss_pred HHhcCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcH---------HHHHHHcCCCCEEEECCCcHHHHhCce-
Confidence 7889999999999999999999998888889999999888754 344444443223445777776655443
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHH
Q 014739 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSK 300 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~ 300 (419)
+.++.+...+++..++++++|+..|. +++.++-. .+.+....|. .+.....+..++.|. +.
T Consensus 128 ~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e~~--------~d~~~~~~g~-------g~a~~~~~~~a~~ea---~~ 188 (266)
T PLN02688 128 SVMSLGPAATADDRDLVATLFGAVGK-IWVVDEKL--------LDAVTGLSGS-------GPAYIFLAIEALADG---GV 188 (266)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHH--------cchhHhhhcC-------HHHHHHHHHHHHHHH---HH
Confidence 33444433367889999999999997 54443211 1111000111 122234566677777 77
Q ss_pred HhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCC
Q 014739 301 LLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELF 380 (419)
Q Consensus 301 a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~ 380 (419)
+. |++++.+.+.. .... ....+.+.+.+ .+++++.+.+ .+-+- .....++..++.|+ .-
T Consensus 189 ~~--Gl~~~~a~~~~------~~~~----~gs~~l~~~~~--~~~~~l~~~v----~spgG-~t~~~l~~l~~~g~--~~ 247 (266)
T PLN02688 189 AA--GLPRDVALSLA------AQTV----LGAAKMVLETG--KHPGQLKDMV----TSPGG-TTIAGVHELEKGGF--RA 247 (266)
T ss_pred Hc--CCCHHHHHHHH------HHHH----HHHHHHHHhcC--CCHHHHHHhC----CCCch-HHHHHHHHHHHCCh--HH
Confidence 77 58888776531 0000 01122222212 3455553332 11111 22334666677888 77
Q ss_pred cHHHHHHHHHhC
Q 014739 381 PLFATVHEICVG 392 (419)
Q Consensus 381 P~~~~~~~~l~~ 392 (419)
.+.+++.+..+.
T Consensus 248 ~~~~a~~~~~~r 259 (266)
T PLN02688 248 ALMNAVVAAAKR 259 (266)
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 40
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.71 E-value=6.8e-17 Score=144.00 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=109.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|.||+.||.+|+++| ++|++|||++++ .+.+.+.| ++...+++|
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g-------~~v~~~d~~~~~------~~~~~~~g--------------~~~~~s~~e 53 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG-------YEVTVYDRSPEK------AEALAEAG--------------AEVADSPAE 53 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT-------TEEEEEESSHHH------HHHHHHTT--------------EEEESSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC-------CeEEeeccchhh------hhhhHHhh--------------hhhhhhhhh
Confidence 789999999999999999999999 999999999766 66776644 567789999
Q ss_pred HhcCCCEEEEccCc-chHHHHHHH--HhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHHH
Q 014739 141 AVKDANMLVFVTPH-QFMEGICKR--LVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIANE 214 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl~~--l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~e 214 (419)
+++.+|+||+|+|+ .++++++.+ +.+.+.+++++|++++ +.++ +...+.+.+.+ .|. ++++..||..+.
T Consensus 54 ~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT-~~p~--~~~~~~~~~~~-~g~~~vdapV~Gg~~~a~- 128 (163)
T PF03446_consen 54 AAEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMST-ISPE--TSRELAERLAA-KGVRYVDAPVSGGPPGAE- 128 (163)
T ss_dssp HHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---HH--HHHHHHHHHHH-TTEEEEEEEEESHHHHHH-
T ss_pred HhhcccceEeecccchhhhhhhhhhHHhhccccceEEEecCC-cchh--hhhhhhhhhhh-ccceeeeeeeeccccccc-
Confidence 99999999999998 789999988 9999999999999986 4332 12233333332 242 345555565444
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEE
Q 014739 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVT 249 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~ 249 (419)
.|. ..++.++ +++.+++++++|+..+.+++
T Consensus 129 --~g~--l~~~~gG-~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 129 --EGT--LTIMVGG-DEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp --HTT--EEEEEES--HHHHHHHHHHHHHHEEEEE
T ss_pred --ccc--eEEEccC-CHHHHHHHHHHHHHHhCCce
Confidence 354 3355556 78999999999988776665
No 41
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.68 E-value=5.8e-15 Score=142.18 Aligned_cols=159 Identities=8% Similarity=0.119 Sum_probs=123.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|+||.+|+..|.++|+..+ ++|++|+|++++ .+.+.+ .| +..+++.++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~---~~I~v~~r~~~~------~~~l~~~~g--------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSP---DQIICSDLNVSN------LKNASDKYG--------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCC---ceEEEECCCHHH------HHHHHHhcC--------------cEEeCCcHH
Confidence 589999999999999999999883111 479999988655 444443 22 234566667
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHhcC
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEK 219 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~g~ 219 (419)
++.+||+||+|||+++++++++++.+.++++++|||+..|+.. +.+++.++.. -.++..|+.+..++.|.
T Consensus 60 ~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i---------~~l~~~l~~~~~vvR~MPN~~~~vg~g~ 130 (272)
T PRK12491 60 VANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSI---------KSTENEFDRKLKVIRVMPNTPVLVGEGM 130 (272)
T ss_pred HHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcH---------HHHHHhcCCCCcEEEECCChHHHHcCce
Confidence 7789999999999999999999999988888999999999975 4566666532 47889999999888774
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014739 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
+.+..+...+.+..+.+.++|+..|..++..++
T Consensus 131 -t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~ 163 (272)
T PRK12491 131 -SALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEK 163 (272)
T ss_pred -EEEEeCCCCCHHHHHHHHHHHHcCCCEEEEcHH
Confidence 444444444567888999999999988777554
No 42
>PRK07680 late competence protein ComER; Validated
Probab=99.64 E-value=2.4e-14 Score=138.20 Aligned_cols=162 Identities=13% Similarity=0.160 Sum_probs=117.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|+||++++..|.++|...+ ++|++|+|+++. .+.+.+.. .++..+.+.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~---~~v~v~~r~~~~------~~~~~~~~------------~g~~~~~~~~~~ 59 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKP---SQLTITNRTPAK------AYHIKERY------------PGIHVAKTIEEV 59 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCc---ceEEEECCCHHH------HHHHHHHc------------CCeEEECCHHHH
Confidence 689999999999999999999982111 379999998754 34443311 023456677777
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCce
Q 014739 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFS 221 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~~ 221 (419)
+.++|+||+|||++++.++++++.+++.++++|+++++|+.. +.+.+.++.+ .+..-|+.+.....|. +
T Consensus 60 ~~~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~---------~~L~~~~~~~-~~r~~p~~~~~~~~G~-t 128 (273)
T PRK07680 60 ISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISV---------EQLETLVPCQ-VARIIPSITNRALSGA-S 128 (273)
T ss_pred HHhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH---------HHHHHHcCCC-EEEECCChHHHHhhcc-E
Confidence 789999999999999999999999988889999999998853 4455555432 3444566655444554 3
Q ss_pred eEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHH
Q 014739 222 EATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVE 255 (419)
Q Consensus 222 ~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~ 255 (419)
.+..+...+.+..+.+.++|+..|..+++.+++.
T Consensus 129 ~~~~g~~~~~~~~~~~~~ll~~~G~~~~i~e~~~ 162 (273)
T PRK07680 129 LFTFGSRCSEEDQQKLERLFSNISTPLVIEEDIT 162 (273)
T ss_pred EEeeCCCCCHHHHHHHHHHHHcCCCEEEEChHhc
Confidence 3334433356777899999999998888877643
No 43
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.64 E-value=5.7e-14 Score=136.04 Aligned_cols=164 Identities=12% Similarity=0.112 Sum_probs=117.8
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|..|||+|||+|+||.+++..|.++|...+ ++|++|+|+++. ..+.+...- +++.+.++
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~---~~v~v~~r~~~~-----~~~~l~~~~-------------g~~~~~~~ 59 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKG---EQITVSNRSNET-----RLQELHQKY-------------GVKGTHNK 59 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCc---ceEEEECCCCHH-----HHHHHHHhc-------------CceEeCCH
Confidence 345799999999999999999999872111 689999987532 034443320 13455677
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHh
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAV 217 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~ 217 (419)
.+++.++|+||+|||++++.++++++.+.+.++++||++.+|+.+ +.+++.++.. ..+...|+.+.....
T Consensus 60 ~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~---------~~l~~~~~~~~~v~r~mPn~~~~~~~ 130 (279)
T PRK07679 60 KELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVST---------HSIRNLLQKDVPIIRAMPNTSAAILK 130 (279)
T ss_pred HHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH---------HHHHHHcCCCCeEEEECCCHHHHHhc
Confidence 777889999999999999999999999888889999999999875 3344444433 355666877665554
Q ss_pred cCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014739 218 EKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 218 g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
+ .+.++.+...+.+..+.++++|+..|-.+++.++
T Consensus 131 ~-~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~ 165 (279)
T PRK07679 131 S-ATAISPSKHATAEHIQTAKALFETIGLVSVVEEE 165 (279)
T ss_pred c-cEEEeeCCCCCHHHHHHHHHHHHhCCcEEEeCHH
Confidence 4 3333332223467889999999999987766544
No 44
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.64 E-value=1.3e-14 Score=137.67 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=125.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|+||.+++..|.++|...+ .+|++.+|++++ .+.+.+.- ++..+++.++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~---~~I~v~~~~~e~------~~~l~~~~-------------g~~~~~~~~~ 58 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPP---EEIIVTNRSEEK------RAALAAEY-------------GVVTTTDNQE 58 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCc---ceEEEeCCCHHH------HHHHHHHc-------------CCcccCcHHH
Confidence 5899999999999999999999982111 588999988765 33333311 1122566677
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCc
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKF 220 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~ 220 (419)
++.++|+||+|||++.+++++.++.+ +.++++|||+..|+.. +.+++.+|..-.+...|+.+..++.|.
T Consensus 59 ~~~~advv~LavKPq~~~~vl~~l~~-~~~~~lvISiaAGv~~---------~~l~~~l~~~~vvR~MPNt~a~vg~g~- 127 (266)
T COG0345 59 AVEEADVVFLAVKPQDLEEVLSKLKP-LTKDKLVISIAAGVSI---------ETLERLLGGLRVVRVMPNTPALVGAGV- 127 (266)
T ss_pred HHhhCCEEEEEeChHhHHHHHHHhhc-ccCCCEEEEEeCCCCH---------HHHHHHcCCCceEEeCCChHHHHcCcc-
Confidence 78899999999999999999999998 7789999999999975 466777773347788999999888885
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014739 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
+.+..+...+.+..+.+.++|+..|-.+++.++.
T Consensus 128 t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~ 161 (266)
T COG0345 128 TAISANANVSEEDKAFVEALLSAVGKVVEVEESL 161 (266)
T ss_pred eeeecCccCCHHHHHHHHHHHHhcCCeEEechHH
Confidence 4344433346788889999999999888887654
No 45
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.64 E-value=3.5e-14 Score=134.68 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=120.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC-CCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE-ETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~-~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+|..|||+|||+|.||.+++..|.++|... ..++++++|+ +++ .+.+.+.. ++..++
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~---~~~i~~~~~~~~~~------~~~~~~~~-------------~~~~~~ 58 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEY---IEEIIVSNRSNVEK------LDQLQARY-------------NVSTTT 58 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCC---cCeEEEECCCCHHH------HHHHHHHc-------------CcEEeC
Confidence 355689999999999999999999886210 0136677764 333 34443311 134556
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHH
Q 014739 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEI 215 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~ 215 (419)
+.++++.++|+||+|||++..+++++++.+.++ +++||++++|+.. +.+++.++. ...++.+|+++.++
T Consensus 59 ~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~-~~~vis~~~gi~~---------~~l~~~~~~~~~v~r~~Pn~a~~v 128 (245)
T PRK07634 59 DWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGP---------SYLEERLPKGTPVAWIMPNTAAEI 128 (245)
T ss_pred ChHHHHhcCCEEEEecCHHHHHHHHHHHHhhcc-CCEEEEECCCCCH---------HHHHHHcCCCCeEEEECCcHHHHH
Confidence 777778899999999999999999999988775 6799999999875 356666653 34668999999999
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014739 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
+.+.+.. ......+++..+.++++|+..|..++..++
T Consensus 129 ~~g~~~~-~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~ 165 (245)
T PRK07634 129 GKSISLY-TMGQSVNETHKETLQLILKGIGTSQLCTEE 165 (245)
T ss_pred hcCCeEE-eeCCCCCHHHHHHHHHHHHhCCCEEEECHH
Confidence 8886543 333333788889999999999988876543
No 46
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.63 E-value=3.7e-15 Score=153.29 Aligned_cols=264 Identities=16% Similarity=0.059 Sum_probs=163.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
+|+|||+|.||.+||.+|+++| ++|++|+|++++ ++.+.+.+.+ + ..+....++++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-------~~V~v~drt~~~------~~~l~~~~~~-----g----~~~~~~~s~~e~v 58 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-------FTVSVYNRTPEK------TDEFLAEHAK-----G----KKIVGAYSIEEFV 58 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-------CeEEEEeCCHHH------HHHHHhhccC-----C----CCceecCCHHHHH
Confidence 4899999999999999999999 999999999876 5666553211 0 0123445666654
Q ss_pred ---cCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHHH
Q 014739 143 ---KDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANEI 215 (419)
Q Consensus 143 ---~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e~ 215 (419)
..+|+||+|+|+ ..++++++++.+.+.++++||+++|+.... .....+.+.+. |.. +.+..|+..|.
T Consensus 59 ~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~---t~~~~~~l~~~-gi~fvdapVsGG~~gA~-- 132 (467)
T TIGR00873 59 QSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPD---TERRYKELKAK-GILFVGSGVSGGEEGAR-- 132 (467)
T ss_pred hhcCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHH---HHHHHHHHHhc-CCEEEcCCCCCCHHHHh--
Confidence 468999999998 789999999999999999999998855432 11122223221 332 34555555444
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEE------EEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHH
Q 014739 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMV------TAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMR 289 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~------~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~ 289 (419)
.| + .++.++ +++.+++++++|+..+-++ .+.++. |....+|+.+|.....+.
T Consensus 133 -~G-~--~im~GG-~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~-----------------GsG~~vKmvhN~i~~~~m 190 (467)
T TIGR00873 133 -KG-P--SIMPGG-SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPD-----------------GAGHYVKMVHNGIEYGDM 190 (467)
T ss_pred -cC-C--cCCCCC-CHHHHHHHHHHHHHHhhhcCCCCceEEECCc-----------------CHHHHHHHHHHHHHHHHH
Confidence 34 2 344555 7899999999998765442 333332 223334455666667788
Q ss_pred HHHHHHHHHHH-HhcCCCCccchhcccC-CcceeecccCcccHHH-HHHhhhccCC---CCHHHHHHHHhcCCeeehHHH
Q 014739 290 IGLREMRAFSK-LLFSSVKDSTFFESCG-VADLITTCLGGRNRKV-AEAFAKNEGK---RSFDDLEAEMLQGQKLQGVST 363 (419)
Q Consensus 290 ~~~~E~~~la~-a~g~g~~~~~~~~~~~-~~d~~~t~~~~rn~~~-g~~l~~~g~~---~~~~~~~~~~~~g~~~Eg~~~ 363 (419)
+++.|+..+++ +. |++++++.+... |- .....+.-... +..+.+ .++ .-++.+... .++.-+|.++
T Consensus 191 ~~~aEa~~ll~~~~--g~~~~~l~~v~~~w~---~~~~~S~l~~~~~~~~~~-~d~~~~~~l~~i~~~--~~~~gtg~wt 262 (467)
T TIGR00873 191 QLICEAYDILKDGL--GLSNEEIAEVFTEWN---NGELDSYLIEITADILKK-KDEDGKPLVDKILDT--AGQKGTGKWT 262 (467)
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHhc---CCcccchHHHhHHHHHhc-cCCCCCccHHhhcCc--ccCccHHHHH
Confidence 99999999986 57 588877765320 00 01111211111 222322 110 113333222 3456677777
Q ss_pred HHHHHHHHHHcCCCcCCcHHHH-HHHHH
Q 014739 364 AREVYEVLSHRGWLELFPLFAT-VHEIC 390 (419)
Q Consensus 364 ~~~v~~~a~~~gv~~~~P~~~~-~~~~l 390 (419)
+. .|-++|+ +.|++.. +++.+
T Consensus 263 ~~----~a~~~~v--~~p~i~~av~~R~ 284 (467)
T TIGR00873 263 AI----SALDLGV--PVTLITESVFARY 284 (467)
T ss_pred HH----HHHHcCC--CchHHHHHHHHHh
Confidence 44 4446788 9998855 44444
No 47
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=2.7e-14 Score=138.05 Aligned_cols=163 Identities=10% Similarity=0.090 Sum_probs=122.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|+||++++..|.++|... .++|.+|+|+++. . .+.+.... ..+..+.+.++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~---~~~V~~~~r~~~~----~-~~~l~~~~------------~~~~~~~~~~e 60 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVAT---PEEIILYSSSKNE----H-FNQLYDKY------------PTVELADNEAE 60 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCC---cccEEEEeCCcHH----H-HHHHHHHc------------CCeEEeCCHHH
Confidence 579999999999999999999987211 1689999986421 0 23333211 01334566767
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCc
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKF 220 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~ 220 (419)
++.++|+||+|+|++.+.++++++.+.+.++++||++++|+.. +.+++.++....++..|+.+..++.|.
T Consensus 61 ~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~---------~~l~~~~~~~~vvR~MPN~~~~~g~g~- 130 (277)
T PRK06928 61 IFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSL---------DDLLEITPGLQVSRLIPSLTSAVGVGT- 130 (277)
T ss_pred HHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH---------HHHHHHcCCCCEEEEeCccHHHHhhhc-
Confidence 7789999999999999999999999988888999999999975 355565654347788999998888874
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014739 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
+.+......+++..+.+.++|+..|..+++.++
T Consensus 131 t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~ 163 (277)
T PRK06928 131 SLVAHAETVNEANKSRLEETLSHFSHVMTIREE 163 (277)
T ss_pred EEEecCCCCCHHHHHHHHHHHHhCCCEEEEchh
Confidence 434443334677888999999999988877654
No 48
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=1.9e-14 Score=140.40 Aligned_cols=274 Identities=14% Similarity=0.111 Sum_probs=180.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-------cCCCeEe
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-------LGKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-------l~~~i~~ 134 (419)
++|+|||+|.+|.++|..++++| ++|..+|.++++ ++.+++...... .++.. -...+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G-------~~ViG~DIn~~~------Vd~ln~G~~~i~-e~~~~~~v~~~v~~g~lra 75 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAG-------FKVIGVDINQKK------VDKLNRGESYIE-EPDLDEVVKEAVESGKLRA 75 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcC-------CceEeEeCCHHH------HHHHhCCcceee-cCcHHHHHHHHHhcCCceE
Confidence 89999999999999999999999 999999999887 888887433222 22211 1345889
Q ss_pred cCCHHHHhcCCCEEEEccCcc----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhH-hC---
Q 014739 135 DPDLENAVKDANMLVFVTPHQ----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQ-LG--- 200 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~-~g--- 200 (419)
|+|+++ +..||++|+|||.. .++++.+.|++.|++|.+||.-++ +.+. +.+.+...+.+. -|
T Consensus 76 Ttd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST-~~PG--TTe~v~~plle~~sgL~~ 151 (436)
T COG0677 76 TTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST-TPPG--TTEEVVKPLLEERSGLKF 151 (436)
T ss_pred ecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC-CCCC--cHHHHHHHHHhhcCCCcc
Confidence 999987 56999999999972 588888999999999999886654 3332 233333333333 22
Q ss_pred -CceEEEeCc-----chHH-HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHh
Q 014739 201 -VSCCVLMGA-----NIAN-EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGF 273 (419)
Q Consensus 201 -~~~~v~~gp-----~~a~-e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~ 273 (419)
.++.+-..| +... ++. ..+ =++|+. +....+..+.++++.--.+....+.+.+|++|++.|+
T Consensus 152 ~~Df~laysPERv~PG~~~~el~-~~~--kVIgG~-tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~------- 220 (436)
T COG0677 152 GEDFYLAYSPERVLPGNVLKELV-NNP--KVIGGV-TPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENT------- 220 (436)
T ss_pred cceeeEeeCccccCCCchhhhhh-cCC--ceeecC-CHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhh-------
Confidence 244444444 3332 222 111 155555 6777777777777765557777889999999987665
Q ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHh
Q 014739 274 VDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEML 353 (419)
Q Consensus 274 ~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~ 353 (419)
.+..-.+..+|+..+|+++| ++...+.+.+.....+ .-++.|.-++ | -++.
T Consensus 221 ----------fRdVNIALaNElali~~~~G--IdvwevIeaAnt~P~~------~~~~PGpGvG--G--HCIp------- 271 (436)
T COG0677 221 ----------FRDVNIALANELALICNAMG--IDVWEVIEAANTKPRV------NIFYPGPGVG--G--HCIP------- 271 (436)
T ss_pred ----------hhHHHHHHHHHHHHHHHHhC--CcHHHHHHHhccCCce------eecCCCCCCC--C--cccc-------
Confidence 34556788999999999995 7877776654332211 1122344333 2 2321
Q ss_pred cCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014739 354 QGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 354 ~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
-|-=++...|+++|. ++.+.++..++ ++..|..+++.+..
T Consensus 272 --------vDP~fl~~ka~~yg~--~~rlI~tAreI--N~~mP~~Vv~~~~~ 311 (436)
T COG0677 272 --------VDPYFLTWKAPEYGL--PARLIRTAREI--NDSMPRHVVDRVKE 311 (436)
T ss_pred --------cCchheeecccccCC--chHHHHHHHHH--hccCCHHHHHHHHH
Confidence 011144566677777 77777777776 55566666665553
No 49
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.59 E-value=1.1e-13 Score=132.94 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=114.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|.||+.++..|.++|.. .++|.+|+|+++. .+.+.+.. ++..+.+.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~----~~~v~v~~r~~~~------~~~~~~~~-------------g~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVP----AKDIIVSDPSPEK------RAALAEEY-------------GVRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCC----cceEEEEcCCHHH------HHHHHHhc-------------CCeecCChHH
Confidence 68999999999999999999998721 1579999998765 45555421 1234566667
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhcC
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVEK 219 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g~ 219 (419)
++.++|+||+|||+..++++++++.+.+ +++||++++|+.. +.+++.++. ...+..-|+++..+..+.
T Consensus 59 ~~~~advVil~v~~~~~~~v~~~l~~~~--~~~vvs~~~gi~~---------~~l~~~~~~~~~iv~~~P~~p~~~~~~~ 127 (267)
T PRK11880 59 AAQEADVVVLAVKPQVMEEVLSELKGQL--DKLVVSIAAGVTL---------ARLERLLGADLPVVRAMPNTPALVGAGM 127 (267)
T ss_pred HHhcCCEEEEEcCHHHHHHHHHHHHhhc--CCEEEEecCCCCH---------HHHHHhcCCCCcEEEecCCchHHHcCce
Confidence 7789999999999999999999998876 5799999999853 345555552 224456677776555442
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc
Q 014739 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAV 251 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~ 251 (419)
+.++.+...+.+..+.++++|+..|..+++.
T Consensus 128 -~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 128 -TALTANALVSAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred -EEEecCCCCCHHHHHHHHHHHHhCCeEEEEC
Confidence 3334443346788899999999999766665
No 50
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.57 E-value=2.8e-13 Score=133.00 Aligned_cols=262 Identities=13% Similarity=0.055 Sum_probs=153.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHH-------HHhcCcCCccCCCCccCCCeE
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDV-------INRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~-------i~~~g~~~~~~~~~~l~~~i~ 133 (419)
+|||+|||+|.||+++|..|+++| ++|++|+|+++. .+...+. +.+.|... ......+..++.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G-------~~V~v~d~~~~~--~~~~~~~~~~~l~~l~~~g~~~-~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAG-------HEVRLWDADPAA--AAAAPAYIAGRLEDLAAFDLLD-GEAPDAVLARIR 71 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCC-------CeeEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCc-hhhHHHHhcCeE
Confidence 478999999999999999999999 999999998764 1111111 11222100 000012234567
Q ss_pred ecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcc
Q 014739 134 ADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGAN 210 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~ 210 (419)
.++++++++.++|+||.|+|+. ....++.++.+..++++++.+.+++... ..+.+.+..+ ..+...|-
T Consensus 72 ~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~---------~~la~~~~~~~~~~~~hp~ 142 (308)
T PRK06129 72 VTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA---------SAFTEHLAGRERCLVAHPI 142 (308)
T ss_pred EECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCH---------HHHHHhcCCcccEEEEecC
Confidence 7889988889999999999985 4666777787777767777666654332 2333333221 23333333
Q ss_pred hHHHHHhcCceeEEEee--cCCHHHHHHHHHHhCCCCcEEEEcC-cHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHH
Q 014739 211 IANEIAVEKFSEATVGY--RDNREIAEKWVQLFSTPYFMVTAVQ-DVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAI 287 (419)
Q Consensus 211 ~a~e~~~g~~~~~~~~~--~~~~~~~~~l~~ll~~~g~~~~~~~-di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l 287 (419)
..... .+ .+.+.+ ..+.+.++++.++++..|.++.... +..+. +. + .+
T Consensus 143 ~p~~~---~~-lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~-----i~----------------n----rl 193 (308)
T PRK06129 143 NPPYL---IP-VVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF-----VL----------------N----RL 193 (308)
T ss_pred CCccc---Cc-eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH-----HH----------------H----HH
Confidence 22110 01 122332 2378899999999999998766553 43221 11 1 13
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHH
Q 014739 288 MRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREV 367 (419)
Q Consensus 288 ~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v 367 (419)
....++|+..++++. +++++++......+ .+.+-..+|..... .. +... |...-..++.++.
T Consensus 194 ~~a~~~EA~~l~~~g--~~~~~~id~~~~~~------~g~~~~~~gp~~~~-d~-~~~~--------g~~~~~~k~~~l~ 255 (308)
T PRK06129 194 QGALLREAFRLVADG--VASVDDIDAVIRDG------LGLRWSFMGPFETI-DL-NAPG--------GVADYAQRYGPMY 255 (308)
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHhc------cCCCccCcCHHHHH-hc-cccc--------cHHHHHHHHHHHH
Confidence 457899999999998 48888876532111 11110001222111 10 1000 1111225677888
Q ss_pred HHHHHHcCCCcCCcHHHHHHHHH
Q 014739 368 YEVLSHRGWLELFPLFATVHEIC 390 (419)
Q Consensus 368 ~~~a~~~gv~~~~P~~~~~~~~l 390 (419)
.+++++.+. +.|+.+..++.+
T Consensus 256 ~~~~~~~~~--~~~~~~~~~~~~ 276 (308)
T PRK06129 256 RRMAAERGQ--PVPWDGELVARV 276 (308)
T ss_pred HhhccccCC--CchhhHHHHHHH
Confidence 888888887 888887766644
No 51
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.56 E-value=1.2e-13 Score=133.55 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=112.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||+++|..|.++|+ .++|++|+|+++. .+...+.|.. ....+++++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~-----~~~v~~~d~~~~~------~~~~~~~g~~-------------~~~~~~~~~ 56 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL-----ISKVYGYDHNELH------LKKALELGLV-------------DEIVSFEEL 56 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC-----CCEEEEEcCCHHH------HHHHHHCCCC-------------cccCCHHHH
Confidence 589999999999999999999982 1368888887654 4444443321 122355564
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce---EEE-----eCcchHH
Q 014739 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC---CVL-----MGANIAN 213 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~---~v~-----~gp~~a~ 213 (419)
. ++|+||+|||...+.+++.++.+ ++++++|+++.. . ...+.+.+.+..+..+ ..+ .||..+.
T Consensus 57 ~-~aD~Vilavp~~~~~~~~~~l~~-l~~~~iv~d~gs--~-----k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~ 127 (275)
T PRK08507 57 K-KCDVIFLAIPVDAIIEILPKLLD-IKENTTIIDLGS--T-----KAKIIESVPKHIRKNFIAAHPMAGTENSGPKAAI 127 (275)
T ss_pred h-cCCEEEEeCcHHHHHHHHHHHhc-cCCCCEEEECcc--c-----hHHHHHHHHHhcCCCEEecCCcCcCchhhHHhcc
Confidence 4 59999999999999999999999 888999987532 1 1223333433221111 111 2344332
Q ss_pred -HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHH
Q 014739 214 -EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNV 266 (419)
Q Consensus 214 -e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni 266 (419)
.+..|....++.....+.+..+++.++|+..|.++...+...+++..+++.|+
T Consensus 128 ~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~l 181 (275)
T PRK08507 128 KGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHL 181 (275)
T ss_pred HHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHH
Confidence 34456543233322235678899999999999888888777777766665554
No 52
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.55 E-value=1e-12 Score=125.94 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=114.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..|||+|||+|+||++++..|.+++...+ .++++++|+++. + + +....++.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~---~~i~~~~~~~~~---------~---~--------------~~~~~~~~ 52 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGK---ENIYYHTPSKKN---------T---P--------------FVYLQSNE 52 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCc---ceEEEECCChhc---------C---C--------------eEEeCChH
Confidence 34799999999999999999998873211 358888776432 0 1 12345666
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhc
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVE 218 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g 218 (419)
+++.++|+||+|+|+++++++++++.+++.+ +.||+..+|+.. +.+++.++. ...+...|+++..+..|
T Consensus 53 ~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~-~~iIS~~aGi~~---------~~l~~~~~~~~~vvr~mPn~p~~~g~g 122 (260)
T PTZ00431 53 ELAKTCDIIVLAVKPDLAGKVLLEIKPYLGS-KLLISICGGLNL---------KTLEEMVGVEAKIVRVMPNTPSLVGQG 122 (260)
T ss_pred HHHHhCCEEEEEeCHHHHHHHHHHHHhhccC-CEEEEEeCCccH---------HHHHHHcCCCCeEEEECCCchhHhcce
Confidence 6678899999999999999999999988764 678999999974 455665553 24668899999877665
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014739 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
. +.++.....+.+..+.+.++|+..|..+++.++
T Consensus 123 ~-t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~ 156 (260)
T PTZ00431 123 S-LVFCANNNVDSTDKKKVIDIFSACGIIQEIKEK 156 (260)
T ss_pred e-EEEEeCCCCCHHHHHHHHHHHHhCCcEEEEChH
Confidence 3 333333233567789999999999999888655
No 53
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.53 E-value=1.9e-13 Score=142.39 Aligned_cols=202 Identities=10% Similarity=0.011 Sum_probs=131.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc----CcCCccCCCCcc--CCCeE
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT----NENVKYLPGIKL--GKNVV 133 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~----g~~~~~~~~~~l--~~~i~ 133 (419)
.+|||+|||+|.||++||..|+++| ++|++||++++. .+.+.+. .....++..... ..+++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G-------~~V~v~D~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~ 69 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAG-------IDVAVFDPHPEA------ERIIGEVLANAERAYAMLTDAPLPPEGRLT 69 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCC-------CeEEEEeCCHHH------HHHHHHHHHHHHHHHhhhccchhhhhhceE
Confidence 3579999999999999999999999 999999998765 2222110 000001111111 12366
Q ss_pred ecCCHHHHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcc
Q 014739 134 ADPDLENAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGAN 210 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~ 210 (419)
.++++++++.+||+||.|+|+.. .+.++.++.+.++++++|.+.+.|+..+ .+.+.+.. ...++..|.
T Consensus 70 ~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s---------~l~~~~~~~~r~~~~hP~ 140 (495)
T PRK07531 70 FCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPS---------DLQEGMTHPERLFVAHPY 140 (495)
T ss_pred eeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---------HHHhhcCCcceEEEEecC
Confidence 77888888899999999999863 5556788888888888888888887642 23333332 234444554
Q ss_pred hHHHHHhcCceeEEEeec--CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHH-HH
Q 014739 211 IANEIAVEKFSEATVGYR--DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKA-AI 287 (419)
Q Consensus 211 ~a~e~~~g~~~~~~~~~~--~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~-~l 287 (419)
.+... +.. +.+.++ .+.+.++++.++|+..|........ ..+|... .+
T Consensus 141 nP~~~--~~L--vevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k-------------------------~~~gfi~nrl 191 (495)
T PRK07531 141 NPVYL--LPL--VELVGGGKTSPETIRRAKEILREIGMKPVHIAK-------------------------EIDAFVGDRL 191 (495)
T ss_pred CCccc--Cce--EEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecC-------------------------CCcchhHHHH
Confidence 33221 222 233332 3578999999999998877665432 1123333 24
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhcc
Q 014739 288 MRIGLREMRAFSKLLFSSVKDSTFFES 314 (419)
Q Consensus 288 ~~~~~~E~~~la~a~g~g~~~~~~~~~ 314 (419)
+...++|+..++++. +++++++...
T Consensus 192 ~~a~~~EA~~L~~~g--~~s~~~id~~ 216 (495)
T PRK07531 192 LEALWREALWLVKDG--IATTEEIDDV 216 (495)
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHH
Confidence 455579999999997 4888877653
No 54
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.52 E-value=1.4e-13 Score=133.38 Aligned_cols=172 Identities=11% Similarity=0.034 Sum_probs=114.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||+++|..|.++| ++|++|+|+++. .+...+.|.. ....++. ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g-------~~V~~~d~~~~~------~~~a~~~g~~------------~~~~~~~-~~ 54 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG-------HTVYGVSRREST------CERAIERGLV------------DEASTDL-SL 54 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHHCCCc------------ccccCCH-hH
Confidence 68999999999999999999999 899999998754 4555443321 0123344 35
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceEEEeCcc-----hHH-
Q 014739 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCCVLMGAN-----IAN- 213 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~v~~gp~-----~a~- 213 (419)
+.++|+||+|+|...+.++++++.+.++++++|+++. ++.. .. .+.+.+.... ....+.|+. .+.
T Consensus 55 ~~~aDlVilavp~~~~~~~~~~l~~~l~~~~ii~d~~-Svk~-----~~-~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~ 127 (279)
T PRK07417 55 LKDCDLVILALPIGLLLPPSEQLIPALPPEAIVTDVG-SVKA-----PI-VEAWEKLHPRFVGSHPMAGTAESGVEAGQR 127 (279)
T ss_pred hcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcEEEeCc-chHH-----HH-HHHHHHhhCCceeeCCcCCCCcchHHHhhH
Confidence 7899999999999999999999999888888776654 2321 11 1222222111 011233332 222
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHH
Q 014739 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNV 266 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni 266 (419)
.+..|.+..++.....+.+.++.++++++..|.++...+...++...++..|.
T Consensus 128 ~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shl 180 (279)
T PRK07417 128 GLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHL 180 (279)
T ss_pred HHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcch
Confidence 24556555444444346788899999999999888777766666666665554
No 55
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.52 E-value=1.6e-13 Score=135.97 Aligned_cols=202 Identities=17% Similarity=0.144 Sum_probs=130.5
Q ss_pred CeEEEECcch--------------------HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCc
Q 014739 62 SKVTVVGSGN--------------------WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVK 121 (419)
Q Consensus 62 mkI~IIGaG~--------------------mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~ 121 (419)
|||.|.|+|+ -|++||..|+++| |+|++|+|+++..+ +...+.+...|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG-------~~V~v~Dr~~~~l~-~~~~~~l~~~G---- 68 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAG-------HDVVLAEPNRSILS-EELWKKVEDAG---- 68 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCC-------CeEEEEECCHHHhh-HHHHHHHHHCC----
Confidence 7899999997 4888999999999 99999999875310 00123344333
Q ss_pred cCCCCccCCCeEecCCHHHHhcCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC
Q 014739 122 YLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG 200 (419)
Q Consensus 122 ~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g 200 (419)
++.++++.+++.++|+||+|+|+.. ++++++.+.+.++++++|++++++-. ...++.+.+.++
T Consensus 69 ----------i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~------~~~s~~l~~~l~ 132 (342)
T PRK12557 69 ----------VKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSP------VVLYYSLEGELR 132 (342)
T ss_pred ----------CEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCH------HHHHHHHHHHhc
Confidence 4566777778899999999999977 99999999999999999998876422 222234444332
Q ss_pred C-----------ceEEEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHH
Q 014739 201 V-----------SCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAI 269 (419)
Q Consensus 201 ~-----------~~~v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~ 269 (419)
. +..+..+|.....+..|.++. ..... +++.+++++++|+..|.++++.+. -.....|.+
T Consensus 133 ~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~-~~~~~-~~e~~e~v~~LL~a~G~~v~~~~~-g~~~~vk~~------ 203 (342)
T PRK12557 133 TKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTN-GTELA-TEEQIEKCVELAESIGKEPYVVPA-DVVSAVADM------ 203 (342)
T ss_pred ccccccCeeecCCccccccccchheEEeCCCcc-cccCC-CHHHHHHHHHHHHHcCCEEEEeCH-HHHHHHHHH------
Confidence 1 112223333322222222210 11112 678889999999999988876653 222222333
Q ss_pred HHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhc
Q 014739 270 AAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFE 313 (419)
Q Consensus 270 ~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~ 313 (419)
+|...++...+..|...++++.| .+|..+.+
T Consensus 204 -----------~n~l~av~~a~~aE~~~l~~~~~--~~p~~~~~ 234 (342)
T PRK12557 204 -----------GSLVTAVALSGVLDYYSVGTKII--KAPKEMIE 234 (342)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 34445566777888888888884 56665543
No 56
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.51 E-value=3.6e-13 Score=132.36 Aligned_cols=201 Identities=17% Similarity=0.165 Sum_probs=128.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-----CcCCccCCCC--ccCCCe
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-----NENVKYLPGI--KLGKNV 132 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-----g~~~~~~~~~--~l~~~i 132 (419)
.++||+|||+|.||+++|..|+++| ++|++|+++++. .+.+++. +.... .+. ....++
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g-------~~V~~~d~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~i 67 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKG-------LQVVLIDVMEGA------LERARGVIERALGVYAP--LGIASAGMGRI 67 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCHHH------HHHHHHHHHHHHHHhhh--cccHHHHhhce
Confidence 3578999999999999999999999 899999998765 3333321 11000 000 011235
Q ss_pred EecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCc
Q 014739 133 VADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGA 209 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp 209 (419)
..++++++++++||+||+|+|+. ....++.++.+.++++++|++.++|+.. ..+.+.++.+ ..+...|
T Consensus 68 ~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~---------~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 68 RMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPI---------TAIAQAVTRPERFVGTHF 138 (311)
T ss_pred EEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCH---------HHHHhhcCCcccEEEEcc
Confidence 56778877788999999999985 4778888898888888888888888753 2333333321 1122223
Q ss_pred chHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc-CcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHH
Q 014739 210 NIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAV-QDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIM 288 (419)
Q Consensus 210 ~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~-~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~ 288 (419)
..+... +....++.+...+.+.++++.++|+..|..+... .|..+. +. +| +.
T Consensus 139 ~~p~~~--~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~----------------nr----~~ 191 (311)
T PRK06130 139 FTPADV--IPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IA----------------NR----IQ 191 (311)
T ss_pred CCCCcc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HH----------------HH----HH
Confidence 222211 2222223232236789999999999999776554 354332 11 11 23
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhc
Q 014739 289 RIGLREMRAFSKLLFSSVKDSTFFE 313 (419)
Q Consensus 289 ~~~~~E~~~la~a~g~g~~~~~~~~ 313 (419)
...++|+..++++. +++++++..
T Consensus 192 ~~~~~Ea~~l~~~g--~~~~~~id~ 214 (311)
T PRK06130 192 HALAREAISLLEKG--VASAEDIDE 214 (311)
T ss_pred HHHHHHHHHHHHcC--CCCHHHHHH
Confidence 45689999998887 467776654
No 57
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.51 E-value=7.4e-13 Score=123.69 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=114.9
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+||| +|+||++++..|+++| ++|++|+|++++ .+.+.....+ .+....+..++.. .+..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-------~~V~v~~r~~~~------~~~l~~~~~~--~~~~~g~~~~~~~-~~~~e 64 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-------NKIIIGSRDLEK------AEEAAAKALE--ELGHGGSDIKVTG-ADNAE 64 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-------CEEEEEEcCHHH------HHHHHHHHHh--hccccCCCceEEE-eChHH
Confidence 7899997 8999999999999999 999999998766 4444332110 0000001112233 34456
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCC--------CcccHHHHHHhHhCC-ceEEEeCcch
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKRE--------GPCMISTLISEQLGV-SCCVLMGANI 211 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~--------~~~~~~~~i~~~~g~-~~~v~~gp~~ 211 (419)
++.++|+||+|+|.+++.++++++.+.+. +++||+++||+..... .....++.+.+.++. .-.+..-|+.
T Consensus 65 a~~~aDvVilavp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~ 143 (219)
T TIGR01915 65 AAKRADVVILAVPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNL 143 (219)
T ss_pred HHhcCCEEEEECCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccC
Confidence 68899999999999999999999887765 5899999999986200 012234667776654 2233333444
Q ss_pred HHHHHhc----CceeEEEeecCCHHHHHHHHHHhCCC-CcEEEEcCcH
Q 014739 212 ANEIAVE----KFSEATVGYRDNREIAEKWVQLFSTP-YFMVTAVQDV 254 (419)
Q Consensus 212 a~e~~~g----~~~~~~~~~~~~~~~~~~l~~ll~~~-g~~~~~~~di 254 (419)
..+...+ ....+.+++. +++..+++.++.+.. ||.......+
T Consensus 144 ~a~~~~~~~~~~~~~~~v~Gd-d~~ak~~v~~L~~~~~G~~~vd~G~l 190 (219)
T TIGR01915 144 SAVLLQDVDDEVDCDVLVCGD-DEEAKEVVAELAGRIDGLRALDAGPL 190 (219)
T ss_pred CHHHhcCCCCCCCCCEEEECC-CHHHHHHHHHHHHhcCCCCcccCCch
Confidence 4332221 1122344544 677788889999988 9987665554
No 58
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.50 E-value=1.8e-12 Score=132.92 Aligned_cols=212 Identities=12% Similarity=0.067 Sum_probs=138.6
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+||| +|.||+++|..|.++| ++|++|+|+++. .+.+.... ++..++++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-------~~V~v~~r~~~~------~~~~a~~~-------------gv~~~~~~~e 54 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-------FEVIVTGRDPKK------GKEVAKEL-------------GVEYANDNID 54 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-------CEEEEEECChHH------HHHHHHHc-------------CCeeccCHHH
Confidence 6899997 8999999999999999 899999998754 33332211 1234567777
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-----EEEeCcchHHHH
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-----CVLMGANIANEI 215 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-----~v~~gp~~a~e~ 215 (419)
++.++|+||+|+|...+.++++++.+.++++++|+++++.- ..+.+.+.+.++... ..+.||..+ .
T Consensus 55 ~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsSvK-------~~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~ 125 (437)
T PRK08655 55 AAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTSVK-------ERPVEAMEEYAPEGVEILPTHPMFGPRTP--S 125 (437)
T ss_pred HhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccccc-------HHHHHHHHHhcCCCCEEEEcCCCCCCCCc--c
Confidence 78899999999999999999999999999999999887411 122345555543211 233455543 2
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHH---HHHHHHHHHHHHhhh-cCCCCccHHHHHHHHH
Q 014739 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELC---GTLKNVVAIAAGFVD-GLEMGNNTKAAIMRIG 291 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~---~al~Ni~a~~~g~~~-~~~~~~n~~~~l~~~~ 291 (419)
..|....++.+...+.+.+++++++|+..|.++...+...++... ..+.++++.+.+... ..+........+...+
T Consensus 126 ~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~~ 205 (437)
T PRK08655 126 LKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASPI 205 (437)
T ss_pred cCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcChh
Confidence 345433323332235788899999999999998877665554443 334555554444321 2222223334677778
Q ss_pred HHHHHHHHHHhcCCCCcc
Q 014739 292 LREMRAFSKLLFSSVKDS 309 (419)
Q Consensus 292 ~~E~~~la~a~g~g~~~~ 309 (419)
++.+..+..+.. +.+|+
T Consensus 206 frd~~~~~tRIa-~~~p~ 222 (437)
T PRK08655 206 YELMIDIIGRIL-GQNPY 222 (437)
T ss_pred hHHHHHHHHHHh-cCCHH
Confidence 888866544442 34554
No 59
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.49 E-value=1.6e-12 Score=127.67 Aligned_cols=182 Identities=11% Similarity=0.097 Sum_probs=115.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.+..+||+|||+|.||.++|..|.++|. .++|++|+|+++. .+..++.|.. .....+
T Consensus 3 ~~~~~~I~IIG~G~mG~sla~~l~~~g~-----~~~V~~~dr~~~~------~~~a~~~g~~------------~~~~~~ 59 (307)
T PRK07502 3 APLFDRVALIGIGLIGSSLARAIRRLGL-----AGEIVGADRSAET------RARARELGLG------------DRVTTS 59 (307)
T ss_pred ccCCcEEEEEeeCHHHHHHHHHHHhcCC-----CcEEEEEECCHHH------HHHHHhCCCC------------ceecCC
Confidence 4456799999999999999999999882 1389999998754 4555443321 123455
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEE----------e
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVL----------M 207 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~----------~ 207 (419)
+++++.++|+||+|+|.....++++++.+.++++++|+++. ++.. ...+.+.+.++....++ .
T Consensus 60 ~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~dvg-s~k~------~~~~~~~~~~~~~~~~v~~hPm~g~e~~ 132 (307)
T PRK07502 60 AAEAVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTDVG-SVKA------SVIAAMAPHLPEGVHFIPGHPLAGTEHS 132 (307)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEeCc-cchH------HHHHHHHHhCCCCCeEEeCCCCCCCccc
Confidence 66678899999999999999999999988888888877653 2221 11222333222111122 2
Q ss_pred CcchH-HHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHH
Q 014739 208 GANIA-NEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAI 269 (419)
Q Consensus 208 gp~~a-~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~ 269 (419)
||..+ .++..|....++.....+.+.++.+.++++..|.++...+.-.++...+. +.++++.
T Consensus 133 G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~ 198 (307)
T PRK07502 133 GPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAY 198 (307)
T ss_pred chhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHH
Confidence 23322 13445554333333333677889999999999988877654444444333 4444443
No 60
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.47 E-value=1.6e-12 Score=130.40 Aligned_cols=206 Identities=15% Similarity=0.130 Sum_probs=126.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+||+|||+|.||+++|..|.++| ++|.+|+++++. .+.....+... . -..+++++++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G-------~~v~i~~~~~~~------~~~~~a~~~~~--------~--~~~~~~~~~~ 57 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAG-------PDVFIIGYDPSA------AQLARALGFGV--------I--DELAADLQRA 57 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcC-------CCeEEEEeCCCH------HHHHHHhcCCC--------C--cccccCHHHH
Confidence 47999999999999999999999 899999998765 22222222111 0 0134566777
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhc-cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEE-----E-----eCcc
Q 014739 142 VKDANMLVFVTPHQFMEGICKRLVG-KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCV-----L-----MGAN 210 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~-~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v-----~-----~gp~ 210 (419)
+.+||+||+|||...+.++++++.+ .++++++|.++. ++-. .+.+.+.+..+....+ + +|+.
T Consensus 58 ~~~aDlVilavP~~~~~~vl~~l~~~~l~~~~ivtDv~-SvK~------~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~ 130 (359)
T PRK06545 58 AAEADLIVLAVPVDATAALLAELADLELKPGVIVTDVG-SVKG------AILAEAEALLGDLIRFVGGHPMAGSHKSGVA 130 (359)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHhhcCCCCCcEEEeCc-cccH------HHHHHHHHhcCCCCeEEeeCCcCcCchhhHH
Confidence 8899999999999999999999987 477887776553 2321 1223333332211111 2 2233
Q ss_pred hHH-HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHHhhhcCCCCccHHHH
Q 014739 211 IAN-EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAGFVDGLEMGNNTKAA 286 (419)
Q Consensus 211 ~a~-e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g~~~~~~~~~n~~~~ 286 (419)
.+. +++.|.++.++.....+.+.++.++++++..|..+...+.-.++...++ +.++++.+.+.. +.........
T Consensus 131 aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al~~~--~~~~~~~~~~ 208 (359)
T PRK06545 131 AARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSLAAR--LAGEHPLALR 208 (359)
T ss_pred HhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHHHHh--hccCchHHHh
Confidence 332 4566765655554434678889999999999988876654444444443 444444333211 1111122234
Q ss_pred HHHHHHHHHHHHH
Q 014739 287 IMRIGLREMRAFS 299 (419)
Q Consensus 287 l~~~~~~E~~~la 299 (419)
+...+++.+++++
T Consensus 209 la~~gfrd~tRia 221 (359)
T PRK06545 209 LAAGGFRDITRIA 221 (359)
T ss_pred hhcccccCCcccc
Confidence 5555566555555
No 61
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.46 E-value=3e-12 Score=123.17 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=131.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH-
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL- 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~- 138 (419)
.+|+|+|+|+|.||+.+|..|.++| +.|.+++++... ........+...+ ..+.+.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g-------~~v~i~g~d~~~------~~~~~a~~lgv~d----------~~~~~~~ 58 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG-------LVVRIIGRDRSA------ATLKAALELGVID----------ELTVAGL 58 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC-------CeEEEEeecCcH------HHHHHHhhcCccc----------ccccchh
Confidence 4689999999999999999999999 899999988764 1111111111110 122232
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--c---eEEEeCcchHH
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--S---CCVLMGANIAN 213 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~---~~v~~gp~~a~ 213 (419)
.++...+|+||+|||-..+.++++++.+.++++++|++++.- ...+.+.+++..+. + ...+.||..-.
T Consensus 59 ~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~-------K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~ 131 (279)
T COG0287 59 AEAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTDVGSV-------KSSVVEAMEKYLPGDVRFVGGHPMFGPEADA 131 (279)
T ss_pred hhhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEecccc-------cHHHHHHHHHhccCCCeeEecCCCCCCcccc
Confidence 445678999999999999999999999999999999987531 12233455554432 1 12345553112
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHH---HHHHHHHHHHHhh-hcCCCCccHHHHHHH
Q 014739 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCG---TLKNVVAIAAGFV-DGLEMGNNTKAAIMR 289 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~---al~Ni~a~~~g~~-~~~~~~~n~~~~l~~ 289 (419)
....+....++.....+.+.++++.++++..|.++...+.-.++...+ ++.|+++.+.+.. ............+..
T Consensus 132 ~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as 211 (279)
T COG0287 132 GLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLAS 211 (279)
T ss_pred cccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhccc
Confidence 344555443444443356789999999999998888877666655544 4556655554432 222111111234455
Q ss_pred HHHHHHHHHH
Q 014739 290 IGLREMRAFS 299 (419)
Q Consensus 290 ~~~~E~~~la 299 (419)
.+++.+.|++
T Consensus 212 ~~frd~tRia 221 (279)
T COG0287 212 GGFRDITRIA 221 (279)
T ss_pred cchhhHHHHH
Confidence 5566555444
No 62
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.45 E-value=1.6e-13 Score=120.40 Aligned_cols=114 Identities=13% Similarity=0.184 Sum_probs=87.0
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCC-ccCCCeEecCCHHHHh
Q 014739 64 VTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGI-KLGKNVVADPDLENAV 142 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~-~l~~~i~~~~~~~ea~ 142 (419)
|+|+|+|+||+.+|..|+++| ++|+++.|++ . .+.+++.|.......+. .+.. .....+..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g-------~~V~l~~r~~-~------~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG-------HDVTLVSRSP-R------LEAIKEQGLTITGPDGDETVQP-PIVISAPSADA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT-------CEEEEEESHH-H------HHHHHHHCEEEEETTEEEEEEE-EEEESSHGHHH
T ss_pred CEEECcCHHHHHHHHHHHHCC-------CceEEEEccc-c------HHhhhheeEEEEecccceeccc-ccccCcchhcc
Confidence 789999999999999999999 9999999987 5 67788877654322211 1111 11223332236
Q ss_pred cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC
Q 014739 143 KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG 200 (419)
Q Consensus 143 ~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g 200 (419)
..+|+||+|||+.+++++++.+.+++.+++.|++++||++.. +.+.+.++
T Consensus 66 ~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~--------~~l~~~~~ 115 (151)
T PF02558_consen 66 GPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNE--------EVLAEYFP 115 (151)
T ss_dssp STESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHH--------HHHHCHST
T ss_pred CCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcH--------HHHHHHcC
Confidence 789999999999999999999999999999999999999863 56666654
No 63
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.43 E-value=3e-13 Score=109.39 Aligned_cols=94 Identities=19% Similarity=0.288 Sum_probs=73.9
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEE-ecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC-CHHH
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMW-VFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP-DLEN 140 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~-~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~-~~~e 140 (419)
||+|||+|+||++++..|.++|. . +++|.++ +|++++ .+.+.+.. ++.++. +..+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~-~---~~~v~~~~~r~~~~------~~~~~~~~-------------~~~~~~~~~~~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI-K---PHEVIIVSSRSPEK------AAELAKEY-------------GVQATADDNEE 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-----GGEEEEEEESSHHH------HHHHHHHC-------------TTEEESEEHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-C---ceeEEeeccCcHHH------HHHHHHhh-------------ccccccCChHH
Confidence 79999999999999999999984 2 2789966 888765 55554432 123344 6778
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+++.+|+||+|||++++.++++++ +...+++++||+++|
T Consensus 58 ~~~~advvilav~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 58 AAQEADVVILAVKPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHHHTSEEEE-S-GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred hhccCCEEEEEECHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 889999999999999999999999 666789999999876
No 64
>PLN02256 arogenate dehydrogenase
Probab=99.43 E-value=5e-12 Score=123.57 Aligned_cols=207 Identities=13% Similarity=0.121 Sum_probs=133.4
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
++.+|||+|||+|.||.++|..|.+.| ++|++|++++.. +.....| +...++
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G-------~~V~~~d~~~~~-------~~a~~~g--------------v~~~~~ 84 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQG-------HTVLATSRSDYS-------DIAAELG--------------VSFFRD 84 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCC-------CEEEEEECccHH-------HHHHHcC--------------CeeeCC
Confidence 556789999999999999999999999 899999987521 2222222 223456
Q ss_pred HHHHh-cCCCEEEEccCcchHHHHHHHH-hccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-EEEeCcchHHH
Q 014739 138 LENAV-KDANMLVFVTPHQFMEGICKRL-VGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-CVLMGANIANE 214 (419)
Q Consensus 138 ~~ea~-~~aDlVilavp~~~~~~vl~~l-~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-~v~~gp~~a~e 214 (419)
.++++ .++|+||+|||...+.++++++ .+.++++++|+++...-. .+.+.+.+.++... .+...|....+
T Consensus 85 ~~e~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~-------~~~~~~~~~l~~~~~~V~~HPmaG~e 157 (304)
T PLN02256 85 PDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKE-------FPKNLLLQVLPEEFDILCTHPMFGPE 157 (304)
T ss_pred HHHHhhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCCchH-------HHHHHHHHhCCCCCeEEecCCCCCCC
Confidence 66654 4699999999999999999998 677888999998865211 12345555543222 22233433222
Q ss_pred H----HhcCceeEEEe------ecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHHhhhcCCCCc
Q 014739 215 I----AVEKFSEATVG------YRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAGFVDGLEMGN 281 (419)
Q Consensus 215 ~----~~g~~~~~~~~------~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g~~~~~~~~~ 281 (419)
. ..+.+ +++. ...+.+..+.+.++++..|.++...+.-.+++..+. +.++++.+..... .
T Consensus 158 ~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~~---~-- 230 (304)
T PLN02256 158 SGKGGWAGLP--FVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKME---L-- 230 (304)
T ss_pred CCccccCCCe--EEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHcC---C--
Confidence 1 22322 1121 122567888999999999998888766555555443 4555544332211 1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 014739 282 NTKAAIMRIGLREMRAFSKLLFSSVKD 308 (419)
Q Consensus 282 n~~~~l~~~~~~E~~~la~a~g~g~~~ 308 (419)
+ ...+...+++.+++++..+- ..+|
T Consensus 231 ~-~~~~~~~gfrd~tria~r~~-~~~p 255 (304)
T PLN02256 231 E-STPINTKGYETLLRLVENTS-SDSF 255 (304)
T ss_pred c-ccccccccHHHHHHHHHhhc-CCCH
Confidence 1 13567778999999998773 3344
No 65
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.43 E-value=3.1e-12 Score=124.42 Aligned_cols=199 Identities=15% Similarity=0.108 Sum_probs=124.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcC--cCCccCCCCc---------c
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTN--ENVKYLPGIK---------L 128 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g--~~~~~~~~~~---------l 128 (419)
.++||+|||+|.||..+|..|+++| ++|++|+++++. .+.+++.- ....+.+... .
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G-------~~V~l~d~~~~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHG-------FDVTIYDISDEA------LEKAKERIAKLADRYVRDLEATKEAPAEAA 68 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcC-------CeEEEEeCCHHH------HHHHHHHHHHHHHHHHHcCCCChhhhHHHH
Confidence 4579999999999999999999999 999999998764 22222110 0000000000 1
Q ss_pred CCCeEecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE
Q 014739 129 GKNVVADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC 204 (419)
Q Consensus 129 ~~~i~~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~ 204 (419)
..+++.+++.++++.++|+||+|+|+. ....+++++.+.+++++++++.+.++.+ .+. .+.... ++.
T Consensus 69 ~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~--------~~~-~~~~~~~~r~v 139 (287)
T PRK08293 69 LNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP--------SQF-AEATGRPEKFL 139 (287)
T ss_pred HcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH--------HHH-HhhcCCcccEE
Confidence 235677889888889999999999975 6788889999988888988776655533 222 222322 211
Q ss_pred E--EeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc-CcHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 014739 205 V--LMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAV-QDVEGVELCGTLKNVVAIAAGFVDGLEMGN 281 (419)
Q Consensus 205 v--~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~-~di~~~e~~~al~Ni~a~~~g~~~~~~~~~ 281 (419)
. ...|.+ ......++.+...+.+.++++.++++..|...... .|..+-
T Consensus 140 g~Hf~~p~~-----~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgf------------------------ 190 (287)
T PRK08293 140 ALHFANEIW-----KNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGY------------------------ 190 (287)
T ss_pred EEcCCCCCC-----cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCH------------------------
Confidence 1 112211 12222223333347889999999999988765443 353221
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCccchh
Q 014739 282 NTKAAIMRIGLREMRAFSKLLFSSVKDSTFF 312 (419)
Q Consensus 282 n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~ 312 (419)
....+....++|+..+.+.- -.+++++.
T Consensus 191 -i~nRi~~~~~~ea~~l~~~g--~a~~~~iD 218 (287)
T PRK08293 191 -ILNSLLVPFLSAALALWAKG--VADPETID 218 (287)
T ss_pred -hHHHHHHHHHHHHHHHHHcC--CCCHHHHH
Confidence 11235566677888777663 24565553
No 66
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.42 E-value=4.3e-12 Score=123.08 Aligned_cols=205 Identities=13% Similarity=0.072 Sum_probs=128.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCc-----chHHHHHHhcCcCCccCCCCccCCCeEe
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSG-----EKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~-----~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
.++||+|||+|.||..+|..|+++| ++|++++++++..+. ++..+.+.+.|..... .......+++.
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g-------~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~l~~ 73 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAG-------YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA-DKEAALARITG 73 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCC-------CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEE
Confidence 4678999999999999999999999 899999998765100 0001122222210000 00001124666
Q ss_pred cCCHHHHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcch
Q 014739 135 DPDLENAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANI 211 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~ 211 (419)
+++.++ +.+||+||+|+|.+. ..++++++.+.+++++++++.++|+.. ..+.+.++.+ -.+...|..
T Consensus 74 ~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~---------~~la~~~~~~~r~ig~h~~~ 143 (282)
T PRK05808 74 TTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSI---------TELAAATKRPDKVIGMHFFN 143 (282)
T ss_pred eCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---------HHHHHhhCCCcceEEeeccC
Confidence 777764 789999999999743 368899999999999999888888764 2334444322 122223333
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHH
Q 014739 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIG 291 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~ 291 (419)
+.++..+. .++.+...+.+..+++.++|+..|..+....|..+. ....++...
T Consensus 144 P~~~~~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~-------------------------i~~Ri~~~~ 196 (282)
T PRK05808 144 PVPVMKLV--EIIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGF-------------------------VVNRILIPM 196 (282)
T ss_pred CcccCccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccCh-------------------------HHHHHHHHH
Confidence 22222221 233333447899999999999999887766654321 112466777
Q ss_pred HHHHHHHHHHhcCCCCccch
Q 014739 292 LREMRAFSKLLFSSVKDSTF 311 (419)
Q Consensus 292 ~~E~~~la~a~g~g~~~~~~ 311 (419)
++|+.++.+. |+ .+++++
T Consensus 197 ~~ea~~~~~~-gv-~~~~di 214 (282)
T PRK05808 197 INEAIFVLAE-GV-ATAEDI 214 (282)
T ss_pred HHHHHHHHHh-CC-CCHHHH
Confidence 8888888766 32 445544
No 67
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.42 E-value=1.7e-12 Score=126.48 Aligned_cols=204 Identities=15% Similarity=0.099 Sum_probs=123.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc--CcCC----ccCCCC---ccCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT--NENV----KYLPGI---KLGK 130 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~--g~~~----~~~~~~---~l~~ 130 (419)
.+.||+|||+|.||+.+|..|+++| ++|++|+++++. .++..+.+++. +... ...... .+..
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G-------~~V~l~d~~~~~--l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~ 72 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTG-------YDVTIVDVSEEI--LKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA 72 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcC-------CeEEEEeCCHHH--HHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHh
Confidence 3568999999999999999999999 899999998765 11111222221 0000 000000 1123
Q ss_pred CeEecCCHHHHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-EEEe
Q 014739 131 NVVADPDLENAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-CVLM 207 (419)
Q Consensus 131 ~i~~~~~~~ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-~v~~ 207 (419)
++..+++. +++.++|+||+|+|+.. ...+++++.+.+++++++++.++|+... .+.+.+..+. .+..
T Consensus 73 ~i~~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~---------~la~~~~~~~r~ig~ 142 (291)
T PRK06035 73 RIRTSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIA---------EIATALERKDRFIGM 142 (291)
T ss_pred CcEeeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHH---------HHHhhcCCcccEEEE
Confidence 45566676 45789999999999864 7888889999889999999999887642 2333332211 1111
Q ss_pred CcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHH
Q 014739 208 GANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAI 287 (419)
Q Consensus 208 gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l 287 (419)
.+..+..+. + ...++.+...+.+.++++.++++..|..+....|..+-. ...+
T Consensus 143 hf~~P~~~~-~-~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv-------------------------~nRl 195 (291)
T PRK06035 143 HWFNPAPVM-K-LIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFF-------------------------TTRF 195 (291)
T ss_pred ecCCCcccC-c-cEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCee-------------------------HHHH
Confidence 111111110 1 112222333468899999999999888877666643321 1235
Q ss_pred HHHHHHHHHHHHHHhcCCCCccch
Q 014739 288 MRIGLREMRAFSKLLFSSVKDSTF 311 (419)
Q Consensus 288 ~~~~~~E~~~la~a~g~g~~~~~~ 311 (419)
....++|+.++.+. |. .+++++
T Consensus 196 ~~~~~~ea~~~~~~-g~-a~~~~i 217 (291)
T PRK06035 196 IEGWLLEAIRSFEI-GI-ATIKDI 217 (291)
T ss_pred HHHHHHHHHHHHHc-CC-CCHHHH
Confidence 56667777777655 31 445554
No 68
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.40 E-value=5.5e-12 Score=122.72 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=108.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-------cCcCCccCCC---CccCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-------TNENVKYLPG---IKLGK 130 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-------~g~~~~~~~~---~~l~~ 130 (419)
++||+|||+|.||..+|..|+++| ++|++|+++++. ++.+.+ .+........ .....
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G-------~~V~~~d~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 67 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSG-------FQTTLVDIKQEQ------LESAQQEIASIFEQGVARGKLTEAARQAALA 67 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCC-------CcEEEEeCCHHH------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 368999999999999999999999 999999998765 333321 1100000000 01123
Q ss_pred CeEecCCHHHHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--c---e
Q 014739 131 NVVADPDLENAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--S---C 203 (419)
Q Consensus 131 ~i~~~~~~~ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~---~ 203 (419)
+++.++++++++.+||+||+|+|+.. ...++.++.+.+++++++++.+.++.++ .+.+.... + .
T Consensus 68 ~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~---------~l~~~~~~~~r~~g~ 138 (288)
T PRK09260 68 RLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPT---------EIASFTKRPERVIAM 138 (288)
T ss_pred CeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---------HHHhhcCCcccEEEE
Confidence 46677888888899999999999853 4566788888888898886665555542 22232222 1 1
Q ss_pred EEEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHH
Q 014739 204 CVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVE 255 (419)
Q Consensus 204 ~v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~ 255 (419)
..+ .|.+. +....++.+...+.+.++++.++++..|..+....|..
T Consensus 139 h~~-~Pv~~-----~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~ 184 (288)
T PRK09260 139 HFF-NPVHK-----MKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFP 184 (288)
T ss_pred ecC-CCccc-----CceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc
Confidence 222 34321 22222222222478899999999999998877666643
No 69
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.39 E-value=2.5e-12 Score=131.92 Aligned_cols=254 Identities=16% Similarity=0.058 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCHHHHhcC---CCE
Q 014739 72 WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDLENAVKD---ANM 147 (419)
Q Consensus 72 mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~~ea~~~---aDl 147 (419)
||..||.+|+++| ++|++|||++++ ++.+.+. +.. .++....++++++.. +|+
T Consensus 1 MG~~mA~nL~~~G-------~~V~v~nrt~~~------~~~l~~~~g~~----------~g~~~~~s~~e~v~~l~~~~~ 57 (459)
T PRK09287 1 MGKNLALNIASHG-------YTVAVYNRTPEK------TDEFLAEEGKG----------KKIVPAYTLEEFVASLEKPRK 57 (459)
T ss_pred CcHHHHHHHHhCC-------CeEEEECCCHHH------HHHHHHhhCCC----------CCeEeeCCHHHHHhhCCCCCE
Confidence 8999999999999 999999999877 5666552 210 124567888887764 899
Q ss_pred EEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHHHHhcCceeE
Q 014739 148 LVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANEIAVEKFSEA 223 (419)
Q Consensus 148 Vilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e~~~g~~~~~ 223 (419)
||+|||+ ..++++++++.+.+.++.+||+++|..... .....+.+.+. |.+ +.+.+|+..|. .| + .
T Consensus 58 Ii~mv~~g~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~---t~~~~~~l~~~-Gi~fvdapVSGG~~gA~---~G-~--s 127 (459)
T PRK09287 58 ILLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKD---TIRREKELAEK-GIHFIGMGVSGGEEGAL---HG-P--S 127 (459)
T ss_pred EEEECCCchHHHHHHHHHHhcCCCCCEEEECCCCCHHH---HHHHHHHHHhc-CCeEEecCCCCCHHHHh---cC-C--E
Confidence 9999998 689999999999999999999998754321 12222333332 432 35556665554 35 3 3
Q ss_pred EEeecCCHHHHHHHHHHhCCCCcEE-------EEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHH
Q 014739 224 TVGYRDNREIAEKWVQLFSTPYFMV-------TAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMR 296 (419)
Q Consensus 224 ~~~~~~~~~~~~~l~~ll~~~g~~~-------~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~ 296 (419)
++.++ +.+.+++++++|+..+-++ .+.++. |....+|+.+|.......+++.|+.
T Consensus 128 iM~GG-~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~-----------------GaGh~vKmvhN~ie~~~mq~iaEa~ 189 (459)
T PRK09287 128 IMPGG-QKEAYELVAPILEKIAAKVEDGEPCVTYIGPD-----------------GAGHYVKMVHNGIEYGDMQLIAEAY 189 (459)
T ss_pred EEEeC-CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 7899999999998765443 333432 2233344556666677889999999
Q ss_pred HHHHH-hcCCCCccchhcccC-CcceeecccCcccHH-HHHHhhhccC----CCCHHHHHHHHhcCCeeehHHHHHHHHH
Q 014739 297 AFSKL-LFSSVKDSTFFESCG-VADLITTCLGGRNRK-VAEAFAKNEG----KRSFDDLEAEMLQGQKLQGVSTAREVYE 369 (419)
Q Consensus 297 ~la~a-~g~g~~~~~~~~~~~-~~d~~~t~~~~rn~~-~g~~l~~~g~----~~~~~~~~~~~~~g~~~Eg~~~~~~v~~ 369 (419)
.++++ . |++++++.+... |- .....+.-.. ....+.. ++ +.-++.+... .+++-+|.+++...
T Consensus 190 ~l~~~~~--Gl~~~~l~~v~~~wn---~g~~~S~l~ei~~~~l~~-~d~~~~~~~~d~i~d~--~~~~gtg~Wt~~~a-- 259 (459)
T PRK09287 190 DLLKDGL--GLSAEEIADVFAEWN---KGELNSYLIEITADILRQ-KDEETGKPLVDVILDK--AGQKGTGKWTSQSA-- 259 (459)
T ss_pred HHHHHhc--CCCHHHHHHHHHHhc---CCCccChHHHhHhHHHhc-CCCCCCCcchHHhcCc--ccCCcHHHHHHHHH--
Confidence 99994 7 588877655320 00 0001111111 1222322 11 0123333222 35666787875544
Q ss_pred HHHHcCCCcCCcHHHH-HHHHH
Q 014739 370 VLSHRGWLELFPLFAT-VHEIC 390 (419)
Q Consensus 370 ~a~~~gv~~~~P~~~~-~~~~l 390 (419)
-++|+ ++|++.. +++.+
T Consensus 260 --~~~~v--~~~~i~~AvfaR~ 277 (459)
T PRK09287 260 --LDLGV--PLTLITEAVFARY 277 (459)
T ss_pred --HHhCC--ChHHHHHHHHHHh
Confidence 46778 8998754 44444
No 70
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.38 E-value=3.7e-12 Score=115.73 Aligned_cols=160 Identities=17% Similarity=0.248 Sum_probs=100.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc------c-CCCeEe
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK------L-GKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~------l-~~~i~~ 134 (419)
|||+|||+|.+|..+|..|+++| |+|+.+|.++++ ++.+++ |..+.+.++.. + ..++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-------~~V~g~D~~~~~------v~~l~~-g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-------HQVIGVDIDEEK------VEALNN-GELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-------SEEEEE-S-HHH------HHHHHT-TSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCC-------CEEEEEeCChHH------HHHHhh-ccccccccchhhhhccccccccchh
Confidence 89999999999999999999999 999999999876 788887 33333444431 1 357889
Q ss_pred cCCHHHHhcCCCEEEEccCcc----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcc-cHHHHHHhHhC--C
Q 014739 135 DPDLENAVKDANMLVFVTPHQ----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPC-MISTLISEQLG--V 201 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~-~~~~~i~~~~g--~ 201 (419)
+++.++++.++|++|+|||.. .++++++.|.+.++++++||.-++ +.+. +.+ ....++++..+ .
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST-vppG--tt~~~~~~ile~~~~~~~ 143 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST-VPPG--TTEELLKPILEKRSGKKE 143 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS-SSTT--HHHHHHHHHHHHHCCTTT
T ss_pred hhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE-EEEe--eehHhhhhhhhhhccccc
Confidence 999998899999999999862 488889999999998888876654 4442 222 34455554432 3
Q ss_pred ceEEEeCcchHH-----HHHhcCceeEEEeecCCHHHHHHHHHH
Q 014739 202 SCCVLMGANIAN-----EIAVEKFSEATVGYRDNREIAEKWVQL 240 (419)
Q Consensus 202 ~~~v~~gp~~a~-----e~~~g~~~~~~~~~~~~~~~~~~l~~l 240 (419)
++.+...|.+.. +-. ..+..++.|.. +....++++++
T Consensus 144 ~f~la~~PErl~~G~a~~d~-~~~~rvV~G~~-~~~~~~~~~~l 185 (185)
T PF03721_consen 144 DFHLAYSPERLREGRAIEDF-RNPPRVVGGCD-DESAEERLKEL 185 (185)
T ss_dssp CEEEEE------TTSHHHHH-HSSSEEEEEES-SHHHHHHHHHH
T ss_pred CCeEEECCCccCCCCcchhc-cCCCEEEEeCC-cHHHHHHHhcC
Confidence 466666666543 212 23555666665 55555566653
No 71
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.38 E-value=9.3e-12 Score=121.33 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=108.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-------CcCCccCCCC---cc
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-------NENVKYLPGI---KL 128 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-------g~~~~~~~~~---~l 128 (419)
+.++||+|||+|.||..+|..|+++| ++|++|+++++. .+.+.+.+.+. |. ++.. ..
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G-------~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~----~~~~~~~~~ 68 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAG-------YDVLLNDVSADR--LEAGLATINGNLARQVAKGK----ISEEARAAA 68 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC-------CeEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCC----CCHHHHHHH
Confidence 45679999999999999999999999 999999998765 11111112111 11 0000 01
Q ss_pred CCCeEecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE
Q 014739 129 GKNVVADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC 204 (419)
Q Consensus 129 ~~~i~~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~ 204 (419)
..+++.+++.++ +.+||+||+|+|+. ..+.+++++.+.+++++++++.+.++.+ + .+.+.... ++.
T Consensus 69 ~~~i~~~~~~~~-~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--------s-~la~~~~~~~r~~ 138 (292)
T PRK07530 69 LARISTATDLED-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--------T-RLASATDRPERFI 138 (292)
T ss_pred HhCeEeeCCHHH-hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--------H-HHHhhcCCcccEE
Confidence 134666777754 78999999999973 4667788999999999999887777653 1 23332221 111
Q ss_pred --EEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014739 205 --VLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 205 --v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
....|.... ....++.+...+.+.++++.++|+..|..+.+..|.
T Consensus 139 g~h~~~p~~~~-----~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~ 185 (292)
T PRK07530 139 GIHFMNPVPVM-----KLVELIRGIATDEATFEAAKEFVTKLGKTITVAEDF 185 (292)
T ss_pred EeeccCCcccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 111122211 112233333347899999999999998877776664
No 72
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.37 E-value=1.8e-11 Score=119.44 Aligned_cols=173 Identities=16% Similarity=0.094 Sum_probs=106.8
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHH-------HHHhcCcCCccCCCCccCCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTD-------VINRTNENVKYLPGIKLGKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~-------~i~~~g~~~~~~~~~~l~~~ 131 (419)
+.++||+|||+|.||..+|..|+.+| ++|++|+++++.. ++..+ .+.+.|....... ......
T Consensus 2 ~~~~~V~vIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ 71 (295)
T PLN02545 2 AEIKKVGVVGAGQMGSGIAQLAAAAG-------MDVWLLDSDPAAL--SRGLDSISSSLARLVKKGKMSQEEA-DATLGR 71 (295)
T ss_pred CCcCEEEEECCCHHHHHHHHHHHhcC-------CeEEEEeCCHHHH--HHHHHHHHHHHHHHHHcCCCCHHHH-HHHHhc
Confidence 44578999999999999999999999 9999999987541 11111 1222221000000 000112
Q ss_pred eEecCCHHHHhcCCCEEEEccC--cchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceEEEe
Q 014739 132 VVADPDLENAVKDANMLVFVTP--HQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCCVLM 207 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp--~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~v~~ 207 (419)
+..+++.+ ++++||+||+|+| ......++.++.+.++++++|++.+.|+.+. .+.+..+. ++.-.
T Consensus 72 ~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~---------~l~~~~~~~~r~~g~- 140 (295)
T PLN02545 72 IRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISIT---------RLASATQRPQQVIGM- 140 (295)
T ss_pred eEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---------HHHhhcCCCcceEEE-
Confidence 34555654 5789999999999 4667777888988888999998888777542 23333322 21111
Q ss_pred CcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014739 208 GANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 208 gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
.+..+... +....++.+...+.+.++++.++|+..|..+....|.
T Consensus 141 h~~~pp~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~ 185 (295)
T PLN02545 141 HFMNPPPI--MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDY 185 (295)
T ss_pred eccCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCc
Confidence 11111111 2222233332347889999999999999887776664
No 73
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.34 E-value=6.9e-11 Score=113.13 Aligned_cols=190 Identities=13% Similarity=0.040 Sum_probs=123.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||.+++..|.++|... .++.+|+|++++ .+.+.+... ++..+.+++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~----~~i~v~~r~~~~------~~~l~~~~~------------~~~~~~~~~~~ 58 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADV----SEIIVSPRNAQI------AARLAERFP------------KVRIAKDNQAV 58 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCh----heEEEECCCHHH------HHHHHHHcC------------CceEeCCHHHH
Confidence 58999999999999999999988211 346788887655 444443210 13455677777
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhcCc
Q 014739 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVEKF 220 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g~~ 220 (419)
+.++|+||+|||++.+.++++++. +.++++||++..|+.. +.+++.++. ...++..|+.+.....| .
T Consensus 59 ~~~aDvVilav~p~~~~~vl~~l~--~~~~~~vis~~ag~~~---------~~l~~~~~~~~~~~r~~P~~~~a~~~g-~ 126 (258)
T PRK06476 59 VDRSDVVFLAVRPQIAEEVLRALR--FRPGQTVISVIAATDR---------AALLEWIGHDVKLVRAIPLPFVAERKG-V 126 (258)
T ss_pred HHhCCEEEEEeCHHHHHHHHHHhc--cCCCCEEEEECCCCCH---------HHHHHHhCCCCCEEEECCCChhhhCCC-C
Confidence 789999999999999999998873 4678999998877653 455555542 23566677765543333 2
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHH
Q 014739 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSK 300 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~ 300 (419)
+ .+.. +. +.++++|+..|-.++..+. . .+.+..+++ ...+.+...+.|+...++
T Consensus 127 t--~~~~--~~---~~~~~l~~~lG~~~~~~~e-~------~~d~~~a~~------------s~~a~~~~~~~~~~~~~~ 180 (258)
T PRK06476 127 T--AIYP--PD---PFVAALFDALGTAVECDSE-E------EYDLLAAAS------------ALMATYFGILETATGWLE 180 (258)
T ss_pred e--EecC--CH---HHHHHHHHhcCCcEEECCh-H------hccceeehh------------ccHHHHHHHHHHHHHHHH
Confidence 2 2222 22 4678888888877765322 1 111111110 012233357888899999
Q ss_pred HhcCCCCccchhc
Q 014739 301 LLFSSVKDSTFFE 313 (419)
Q Consensus 301 a~g~g~~~~~~~~ 313 (419)
+.| +++++...
T Consensus 181 ~~G--l~~~~a~~ 191 (258)
T PRK06476 181 EQG--LKRQKARA 191 (258)
T ss_pred HcC--CCHHHHHH
Confidence 994 78776654
No 74
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.33 E-value=5.2e-11 Score=116.96 Aligned_cols=169 Identities=17% Similarity=0.132 Sum_probs=110.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH-------hcCcCCccCCCCccCCCe
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN-------RTNENVKYLPGIKLGKNV 132 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~-------~~g~~~~~~~~~~l~~~i 132 (419)
.+.||+|||+|.||..+|..|+.+| ++|++||++++. .+.+.+.+. +.+.. ....+.++
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG-------~~V~l~D~~~~~--~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~i 71 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHG-------LDVVAWDPAPGA--EAALRANVANAWPALERQGLA-----PGASPARL 71 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC-------CeEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCC-----hhhHHhhc
Confidence 4578999999999999999999999 999999998764 111111121 11111 01123456
Q ss_pred EecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceEE--E
Q 014739 133 VADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCCV--L 206 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~v--~ 206 (419)
..++++++++.+||+||.|+|. .....++.++.+.++++++|.|.|.++.. ..+.+.... ++.. .
T Consensus 72 ~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~---------s~la~~~~~p~R~~g~Hf 142 (321)
T PRK07066 72 RFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLP---------TDFYARATHPERCVVGHP 142 (321)
T ss_pred eecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCH---------HHHHHhcCCcccEEEEec
Confidence 7788898888999999999997 34666778899999999988777776643 233333332 2222 2
Q ss_pred eCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc-CcHHH
Q 014739 207 MGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAV-QDVEG 256 (419)
Q Consensus 207 ~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~-~di~~ 256 (419)
..|.+.. ....++.+...+.+.++++.+++...|...... .|..|
T Consensus 143 fnP~~~~-----pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pG 188 (321)
T PRK07066 143 FNPVYLL-----PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPG 188 (321)
T ss_pred CCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCcc
Confidence 2333211 111223333347899999999999998665544 56543
No 75
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.33 E-value=2.6e-11 Score=110.18 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=111.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||+|+|+|+|+||+++|.+|+++| |+|.+-+|+.+. + .+...+ .+. .+.. .+++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag-------~eV~igs~r~~~--~---~~a~a~~l~~------------~i~~-~~~~ 55 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG-------HEVIIGSSRGPK--A---LAAAAAALGP------------LITG-GSNE 55 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC-------CeEEEecCCChh--H---HHHHHHhhcc------------cccc-CChH
Confidence 789999999999999999999999 999999776553 1 122221 111 1223 3456
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc--CC-C-----CcccHHHHHHhHhCCceEEEeCcch
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV--KR-E-----GPCMISTLISEQLGVSCCVLMGANI 211 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~--~~-~-----~~~~~~~~i~~~~g~~~~v~~gp~~ 211 (419)
++.+.+|+||++||-..+.+++.++...+. |++||+.+|.+.. ++ + .....++.+.+.++.. -++..-++
T Consensus 56 dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~ 133 (211)
T COG2085 56 DAAALADVVVLAVPFEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNT 133 (211)
T ss_pred HHHhcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcc
Confidence 778899999999999999999999998776 8999999998531 11 0 1234567777777532 12211111
Q ss_pred --HHHHH----hcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014739 212 --ANEIA----VEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 212 --a~e~~----~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
+..+. .+.-..+.+++. |.+..+.+.++.+..|++....+.
T Consensus 134 i~a~~l~~~~~~~~~~~v~vagD-D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 134 IPAAVLADLAKPGGRRDVLVAGD-DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred cCHHHhccCCCcCCceeEEEecC-cHHHHHHHHHHHHhcCcceeeccc
Confidence 11111 111223445554 788889999999999988765443
No 76
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.32 E-value=9e-11 Score=118.19 Aligned_cols=162 Identities=16% Similarity=0.201 Sum_probs=110.8
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.+++|+||| +|.||+.+|..|.++| ++|++|+|++. +++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G-------~~V~~~d~~~~---------------------------------~~~ 136 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG-------YQVRILEQDDW---------------------------------DRA 136 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC-------CeEEEeCCCcc---------------------------------hhH
Confidence 568999999 9999999999999999 99999997521 123
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHHH
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANEI 215 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e~ 215 (419)
++++.+||+||+|||.....++++++.+ ++++++|++++. +- ..+.+.+.+..+.+ ...+.||....
T Consensus 137 ~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~S-vK------~~~~~~~~~~~~~~fvg~HPm~G~~~~~-- 206 (374)
T PRK11199 137 EDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLTS-VK------NAPLQAMLAAHSGPVLGLHPMFGPDVGS-- 206 (374)
T ss_pred HHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECCC-cc------HHHHHHHHHhCCCCEEeeCCCCCCCCcc--
Confidence 4556789999999999999999999988 889999998853 21 11223333333222 12344554321
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHHh
Q 014739 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAGF 273 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g~ 273 (419)
..+. .+++....+.+.++++.++++..|.++...+.-.++...+. +.|+.+++.+.
T Consensus 207 ~~~~--~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~ 265 (374)
T PRK11199 207 LAKQ--VVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGL 265 (374)
T ss_pred cCCC--EEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 23444332567788999999999999888776666655444 45555555443
No 77
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.30 E-value=1.4e-10 Score=113.70 Aligned_cols=150 Identities=9% Similarity=0.055 Sum_probs=104.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-+||+|||+|+||.++|..|.++| ++|.++++.... . .+...+.| +... +.++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG-------~~Viv~~~~~~~----~-~~~a~~~G--------------v~~~-s~~e 55 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG-------LNVIVGLRKGGA----S-WKKATEDG--------------FKVG-TVEE 55 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC-------CeEEEEECcChh----h-HHHHHHCC--------------CEEC-CHHH
Confidence 378999999999999999999999 788776654321 1 23333333 2333 4667
Q ss_pred HhcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHH-H--
Q 014739 141 AVKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANE-I-- 215 (419)
Q Consensus 141 a~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e-~-- 215 (419)
++.++|+|++++|++ +...+++++.+.++++. +|++.-|+.+. .+...+|.+ -.++..|+.+.+ +
T Consensus 56 a~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~---------~~~~~~~~~~~VvrvmPn~p~~~vr~ 125 (314)
T TIGR00465 56 AIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIH---------FVQIVPPKDVDVVMVAPKGPGTLVRE 125 (314)
T ss_pred HHhcCCEEEEeCCcHhHHHHHHHHHHhhCCCCc-EEEEeCCccHh---------hccccCCCCCcEEEECCCCCcHHHHH
Confidence 788999999999998 77777788988887775 88888898763 334444433 366788887776 3
Q ss_pred ----HhcCceeEEEeecCCHHHHHHHHHHhCCCCcE
Q 014739 216 ----AVEKFSEATVGYRDNREIAEKWVQLFSTPYFM 247 (419)
Q Consensus 216 ----~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~ 247 (419)
+.|.+..+.+....+.+..+.+..+|+..|..
T Consensus 126 ~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 126 EYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred HhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 66654322233333566777888888877755
No 78
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.28 E-value=5e-11 Score=107.91 Aligned_cols=166 Identities=19% Similarity=0.191 Sum_probs=101.4
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-------cCcCCccCCCCccCCCeEec
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-------TNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-------~g~~~~~~~~~~l~~~i~~~ 135 (419)
||+|||+|.||..+|..++.+| ++|++++++++. .++..+.+++ .+..... .-.....++..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-------~~V~l~d~~~~~--l~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-------YEVTLYDRSPEA--LERARKRIERLLDRLVRKGRLSQE-EADAALARISFT 70 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-------SEEEEE-SSHHH--HHHHHHHHHHHHHHHHHTTTTTHH-HHHHHHHTEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-------CcEEEEECChHH--HHhhhhHHHHHHhhhhhhccchhh-hhhhhhhhcccc
Confidence 7999999999999999999999 999999998764 1111222222 1110000 000112457888
Q ss_pred CCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ce--EEEeCc
Q 014739 136 PDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SC--CVLMGA 209 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~--~v~~gp 209 (419)
++++++. +||+||-|+|. ....+++.+|...+++++++.+.+.++.++ .+.+.++. ++ .-...|
T Consensus 71 ~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~---------~la~~~~~p~R~ig~Hf~~P 140 (180)
T PF02737_consen 71 TDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS---------ELAAALSRPERFIGMHFFNP 140 (180)
T ss_dssp SSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH---------HHHTTSSTGGGEEEEEE-SS
T ss_pred cCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH---------HHHhccCcCceEEEEecccc
Confidence 9998866 99999999997 567888999999999999999999887652 23332332 22 222345
Q ss_pred chHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014739 210 NIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 210 ~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
.+.. ....++.+...+.+.++++.++++..|.......|
T Consensus 141 ~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 141 PHLM-----PLVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp TTT-------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred cccC-----ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4322 12233444445788999999999988877665444
No 79
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.27 E-value=5.2e-11 Score=124.01 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=107.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHH-------HhcCcCCccCCCCccCCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVI-------NRTNENVKYLPGIKLGKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i-------~~~g~~~~~~~~~~l~~~ 131 (419)
.+.+||+|||+|.||+.+|..|+++| ++|++|+++++.+ ++..+.+ .+.|..... .-.....+
T Consensus 3 ~~~~kV~VIGaG~MG~gIA~~la~aG-------~~V~l~d~~~e~l--~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~ 72 (503)
T TIGR02279 3 INVVTVAVIGAGAMGAGIAQVAASAG-------HQVLLYDIRAEAL--ARAIAGIEARLNSLVTKGKLTAE-ECERTLKR 72 (503)
T ss_pred CCccEEEEECcCHHHHHHHHHHHhCC-------CeEEEEeCCHHHH--HHHHHHHHHHHHHHHhcCCCCHH-HHHHHHhc
Confidence 35678999999999999999999999 9999999997651 1111111 122211000 00012235
Q ss_pred eEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc--e--EE
Q 014739 132 VVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS--C--CV 205 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~--~--~v 205 (419)
++.++++++ +.+||+||.|++. ...+.++.++.+.+++++++.+.+.++.++ .+.+.+..+ + ..
T Consensus 73 i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~---------~iA~~~~~p~r~~G~H 142 (503)
T TIGR02279 73 LIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSIT---------AIAAGLARPERVAGLH 142 (503)
T ss_pred cEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH---------HHHHhcCcccceEEEe
Confidence 677888875 6799999999997 345555677888888888888777766542 222222211 1 11
Q ss_pred EeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHH
Q 014739 206 LMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVE 255 (419)
Q Consensus 206 ~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~ 255 (419)
...|.... ....++-+...+.+.++++.++++..|.......|..
T Consensus 143 Ff~Papv~-----~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~p 187 (503)
T TIGR02279 143 FFNPAPVM-----ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTP 187 (503)
T ss_pred ccCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCC
Confidence 12222111 1222222223468899999999999988777666643
No 80
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.26 E-value=4.4e-10 Score=110.31 Aligned_cols=150 Identities=9% Similarity=0.057 Sum_probs=101.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.++|+|||+|+||.++|..|.++| ++|.+++|+.+. . .+...+.| +.. .++++
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG-------~~Vvv~~r~~~~--s---~~~A~~~G--------------~~~-~s~~e 69 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSG-------VDVVVGLREGSK--S---WKKAEADG--------------FEV-LTVAE 69 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCC-------CEEEEEECCchh--h---HHHHHHCC--------------Cee-CCHHH
Confidence 468999999999999999999999 899988876543 0 12222222 223 36778
Q ss_pred HhcCCCEEEEccCcchHHHHH-HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-EEEeCcchHHH----
Q 014739 141 AVKDANMLVFVTPHQFMEGIC-KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-CVLMGANIANE---- 214 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-~v~~gp~~a~e---- 214 (419)
+++.+|+|++++|+....+++ +++.+.++++++| +...|+... ....+.+... .++..|+.+.+
T Consensus 70 aa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~---------~~~~~p~~~~~Vi~vaPn~Pg~~vr~ 139 (330)
T PRK05479 70 AAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIH---------FGQIVPPADVDVIMVAPKGPGHLVRR 139 (330)
T ss_pred HHhcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEE-EECCCCChh---------hceeccCCCCcEEEeCCCCCchhhhh
Confidence 889999999999998889998 7899999989888 666787653 2222223222 44455666544
Q ss_pred ---HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE
Q 014739 215 ---IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM 247 (419)
Q Consensus 215 ---~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~ 247 (419)
.+.|.+..+.+....+.+..+.+..+++..|..
T Consensus 140 ~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~ 175 (330)
T PRK05479 140 EYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGT 175 (330)
T ss_pred hhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 455654322133222366677777777766543
No 81
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.24 E-value=1.6e-10 Score=112.25 Aligned_cols=191 Identities=14% Similarity=0.051 Sum_probs=117.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHH-------HHhcCcCCccCCCCccCCCeE
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDV-------INRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~-------i~~~g~~~~~~~~~~l~~~i~ 133 (419)
+.||+|||+|.||..+|..|+.+| ++|++||++++.. +...+. +.+.|..... .......+++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G-------~~V~l~d~~~~~~--~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~ 74 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAG-------VDVLVFETTEELA--TAGRNRIEKSLERAVSRGKLTER-ERDAALARLR 74 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC-------CEEEEEECCHHHH--HHHHHHHHHHHHHHHhcccCChh-hHHHHHhCeE
Confidence 458999999999999999999999 9999999998751 111111 2222211000 0001224567
Q ss_pred ecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccC-CCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--EE
Q 014739 134 ADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKV-NGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--VL 206 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l-~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v~ 206 (419)
.+++++ ++.+||+||.|+|. .....++..+...+ ++++++++.+.++..+ .+...... ++. ..
T Consensus 75 ~~~~~~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~---------~la~~~~~~~r~~g~hf 144 (286)
T PRK07819 75 FTTDLG-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM---------KLAAATKRPGRVLGLHF 144 (286)
T ss_pred eeCCHH-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---------HHHhhcCCCccEEEEec
Confidence 788885 47999999999997 34555667788877 7899999988776542 22332222 211 12
Q ss_pred eCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhC-CCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHH
Q 014739 207 MGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS-TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKA 285 (419)
Q Consensus 207 ~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~-~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~ 285 (419)
..|.+.. + ...++.+...+.+.++++.+++. ..|..+....|..+- ...
T Consensus 145 ~~P~~~~----~-lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf-------------------------i~n 194 (286)
T PRK07819 145 FNPVPVL----P-LVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGF-------------------------VVN 194 (286)
T ss_pred CCCcccC----c-eEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCCh-------------------------HHH
Confidence 2232211 1 12334444447899999999976 466655544553221 112
Q ss_pred HHHHHHHHHHHHHHHH
Q 014739 286 AIMRIGLREMRAFSKL 301 (419)
Q Consensus 286 ~l~~~~~~E~~~la~a 301 (419)
.+....++|+.++.+.
T Consensus 195 Ri~~~~~~Ea~~ll~e 210 (286)
T PRK07819 195 ALLVPYLLSAIRMVES 210 (286)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3566677788877765
No 82
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.23 E-value=3e-10 Score=118.63 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=105.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHH-------HHhcCcCCccCCCCccCCCe
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDV-------INRTNENVKYLPGIKLGKNV 132 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~-------i~~~g~~~~~~~~~~l~~~i 132 (419)
...||+|||+|.||..||..|+++| ++|++||++++.. ++..+. +.+.|.-... .......++
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG-------~~V~l~D~~~e~l--~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i 75 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAG-------HTVLLYDARAGAA--AAARDGIAARLAKLVEKGKLTAE-QADAALARL 75 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CeEEEEeCCHHHH--HHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCe
Confidence 4568999999999999999999999 9999999998751 111111 1222210000 000112346
Q ss_pred EecCCHHHHhcCCCEEEEccCc-chH-HHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ce--EEE
Q 014739 133 VADPDLENAVKDANMLVFVTPH-QFM-EGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SC--CVL 206 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~-~~~-~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~--~v~ 206 (419)
+.++++++ +.+||+||.|++. ..+ ..++.++...+++++++.+.+.+++++ .+.+.... ++ ...
T Consensus 76 ~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---------~la~~~~~p~r~~G~hf 145 (507)
T PRK08268 76 RPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---------AIAAALKHPERVAGLHF 145 (507)
T ss_pred EEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---------HHHhhcCCcccEEEEee
Confidence 77788876 6799999999997 344 445577888788899988777666642 23332221 11 112
Q ss_pred eCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHH
Q 014739 207 MGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVE 255 (419)
Q Consensus 207 ~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~ 255 (419)
..|.... ....++-+...+.+.++++.++++..|.......|..
T Consensus 146 f~Pa~v~-----~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~p 189 (507)
T PRK08268 146 FNPVPLM-----KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTP 189 (507)
T ss_pred cCCcccC-----eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCC
Confidence 2222211 1222222222478899999999998887766666543
No 83
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.19 E-value=5.4e-10 Score=122.36 Aligned_cols=168 Identities=16% Similarity=0.098 Sum_probs=109.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||+|||+|.||.+++..|.++|. .++|++|+|+++. .+...+.|.. ....++.++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~-----~~~V~~~d~~~~~------~~~a~~~g~~------------~~~~~~~~~ 59 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGL-----AREVVAVDRRAKS------LELAVSLGVI------------DRGEEDLAE 59 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC-----CCEEEEEECChhH------HHHHHHCCCC------------CcccCCHHH
Confidence 3689999999999999999999882 1479999998765 4444443321 012345666
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceE-----EEeCcc----
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCC-----VLMGAN---- 210 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~-----v~~gp~---- 210 (419)
++.++|+||+|+|...++++++++.+.++++++|+++. ++. ..+.+.+++.++. ... .+.|+.
T Consensus 60 ~~~~aDvVilavp~~~~~~vl~~l~~~~~~~~ii~d~~-svk------~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~ 132 (735)
T PRK14806 60 AVSGADVIVLAVPVLAMEKVLADLKPLLSEHAIVTDVG-STK------GNVVDAARAVFGELPAGFVPGHPIAGSEKSGV 132 (735)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEcC-CCc------hHHHHHHHHhccccCCeEEecCCcCcCCcchh
Confidence 78899999999999999999999999888887776664 232 1122344444321 111 122222
Q ss_pred -hHH-HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHH
Q 014739 211 -IAN-EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVE 258 (419)
Q Consensus 211 -~a~-e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e 258 (419)
.+. +...+....++.....+.+..+.+.++|+..|.++...+.-.++.
T Consensus 133 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~~~hD~ 182 (735)
T PRK14806 133 HAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDVAHHDE 182 (735)
T ss_pred hhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhH
Confidence 111 344455444444333367788899999999998776654433433
No 84
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=7.9e-10 Score=101.36 Aligned_cols=274 Identities=15% Similarity=0.135 Sum_probs=156.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|+|+.||+|.||..++.+|.+.| |+|..||++++. ++.+...+. +..+++++.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-------hdvV~yD~n~~a------v~~~~~~ga--------------~~a~sl~el 53 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-------HDVVGYDVNQTA------VEELKDEGA--------------TGAASLDEL 53 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-------CeEEEEcCCHHH------HHHHHhcCC--------------ccccCHHHH
Confidence 78999999999999999999999 999999999876 777776552 234455443
Q ss_pred ---hcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce---EEEeCcchHHH
Q 014739 142 ---VKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC---CVLMGANIANE 214 (419)
Q Consensus 142 ---~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~---~v~~gp~~a~e 214 (419)
+.....|-++||.. .+.++++++++.|.++.+||+--|.--.+ +.+. .+.+.+. |.++ ....|+--+.
T Consensus 54 ~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~D--s~rr-~~~l~~k-gi~flD~GTSGG~~G~~- 128 (300)
T COG1023 54 VAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKD--SLRR-AKLLAEK-GIHFLDVGTSGGVWGAE- 128 (300)
T ss_pred HHhcCCCcEEEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHH--HHHH-HHHHHhc-CCeEEeccCCCCchhhh-
Confidence 44678999999985 89999999999999999999876643321 1111 1122221 4332 3334433222
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHH
Q 014739 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLRE 294 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E 294 (419)
...++++++ +.+..+++.++|+..... ++ +-..++ ..|...-.|+.+|-.---+.++++|
T Consensus 129 ----~G~~lMiGG--~~~a~~~~~pif~~lA~g----e~--Gyl~~G--------p~GsGHfvKMVHNGIEYGmM~a~aE 188 (300)
T COG1023 129 ----RGYCLMIGG--DEEAVERLEPIFKALAPG----ED--GYLYCG--------PSGSGHFVKMVHNGIEYGMMQAIAE 188 (300)
T ss_pred ----cCceEEecC--cHHHHHHHHHHHHhhCcC----cC--cccccc--------CCCcchhHHHHhccHHHHHHHHHHH
Confidence 223455554 789999999999853210 10 000000 0112222233455555567888999
Q ss_pred HHHHHHHhcCCCCccchhcccCCcceeecccCcccHHH---HHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHH
Q 014739 295 MRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKV---AEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVL 371 (419)
Q Consensus 295 ~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~---g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a 371 (419)
-..+.++.-...|.+.+.+.-.-+.++ |...+ .+.+.+ . ..++++.-.++ ..-||.+++. .|
T Consensus 189 GfelL~~s~fD~D~~~VA~vW~hGSVI------rSWLldLt~~Af~~-d--~~L~q~~g~v~--dSGEGrWTv~----~a 253 (300)
T COG1023 189 GFELLKNSPFDYDLEAVAEVWNHGSVI------RSWLLDLTAEAFKK-D--PDLDQISGRVS--DSGEGRWTVE----EA 253 (300)
T ss_pred HHHHHHhCCCCCCHHHHHHHHhCcchH------HHHHHHHHHHHHhh-C--CCHHHhcCeec--cCCCceeehH----HH
Confidence 999988873233333333321111111 11111 122222 1 12333321110 1236777744 44
Q ss_pred HHcCCCcCCcHHHH-HHHHHhCCCCHHHHHHHHhc
Q 014739 372 SHRGWLELFPLFAT-VHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 372 ~~~gv~~~~P~~~~-~~~~l~~~~~~~~~~~~~~~ 405 (419)
-+.|+ +.|++.. ++.-+....+ +.....+..
T Consensus 254 ldlgv--paPVia~al~~Rf~S~~~-d~f~~kvla 285 (300)
T COG1023 254 LDLGV--PAPVIALALMMRFRSRQD-DTFAGKVLA 285 (300)
T ss_pred HhcCC--CchHHHHHHHHHHhccch-hhHHHHHHH
Confidence 46788 9999876 4444443333 444444443
No 85
>PLN02712 arogenate dehydrogenase
Probab=99.18 E-value=9.8e-10 Score=117.98 Aligned_cols=178 Identities=12% Similarity=0.099 Sum_probs=114.4
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+..+|||+|||+|.||..+|..|.+.| ++|++|+|+... +...+.| +...++
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G-------~~V~~~dr~~~~-------~~A~~~G--------------v~~~~d 100 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQG-------HTVLAHSRSDHS-------LAARSLG--------------VSFFLD 100 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCC-------CEEEEEeCCHHH-------HHHHHcC--------------CEEeCC
Confidence 455689999999999999999999999 899999987432 2222222 234556
Q ss_pred HHHHh-cCCCEEEEccCcchHHHHHHHHh-ccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-----EEEeCcc
Q 014739 138 LENAV-KDANMLVFVTPHQFMEGICKRLV-GKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-----CVLMGAN 210 (419)
Q Consensus 138 ~~ea~-~~aDlVilavp~~~~~~vl~~l~-~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-----~v~~gp~ 210 (419)
+++++ .++|+||+|||...+.++++++. +.++++++|+++.+ + ...+.+.+.+.++..+ ..+.||.
T Consensus 101 ~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~g~iVvDv~S-v------K~~~~~~l~~~l~~~~~~v~~HPMaG~e 173 (667)
T PLN02712 101 PHDLCERHPDVILLCTSIISTENVLKSLPLQRLKRNTLFVDVLS-V------KEFAKNLLLDYLPEDFDIICSHPMFGPQ 173 (667)
T ss_pred HHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCCCeEEEECCC-C------cHHHHHHHHHhcCCCCeEEeeCCcCCCc
Confidence 66644 56999999999999999999886 67888999998852 2 1223345555543221 2344555
Q ss_pred hHHHHHhcCceeEEEe----ec--CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHH---HHHHHHHHHHHH
Q 014739 211 IANEIAVEKFSEATVG----YR--DNREIAEKWVQLFSTPYFMVTAVQDVEGVELC---GTLKNVVAIAAG 272 (419)
Q Consensus 211 ~a~e~~~g~~~~~~~~----~~--~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~---~al~Ni~a~~~g 272 (419)
.......+.. ..+. +. ...+.++.+.++++..|.++...+.-.++... ..+.|+++.+..
T Consensus 174 ~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~ 242 (667)
T PLN02712 174 SAKHGWDGLR--FVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLE 242 (667)
T ss_pred cccchhccCc--EEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322223332 2222 11 01245677789999999988877655554443 345666555443
No 86
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.17 E-value=1.5e-11 Score=104.38 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=63.9
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
....+||+|||+|.+|..++..|.++| |.|. +++|+++. .+..... . + .. ...
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag-------~~v~~v~srs~~s------a~~a~~~-~-----~------~~-~~~ 60 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAG-------HEVVGVYSRSPAS------AERAAAF-I-----G------AG-AIL 60 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTT-------SEEEEESSCHH-H------HHHHHC--------T------T-----
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCC-------CeEEEEEeCCccc------ccccccc-c-----c------cc-ccc
Confidence 556789999999999999999999999 7875 45676543 2333321 0 0 11 223
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhcc--CCCCcEEEEeecCcc
Q 014739 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGK--VNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~--l~~~tiivs~~nGi~ 182 (419)
++++.+.++|++|++||+..+.++.++|... ..++++|+.++-..+
T Consensus 61 ~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 61 DLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp -TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred ccccccccCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 4566788999999999999999999999987 778999999986554
No 87
>PLN02712 arogenate dehydrogenase
Probab=99.12 E-value=1.9e-09 Score=115.79 Aligned_cols=204 Identities=13% Similarity=0.145 Sum_probs=121.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...|||+|||+|.||..+|..|.+.| ++|.+|+|+... +...+.| +...++.
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G-------~~V~~~dr~~~~-------~~a~~~G--------------v~~~~~~ 418 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQG-------HTVLAYSRSDYS-------DEAQKLG--------------VSYFSDA 418 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCc-------CEEEEEECChHH-------HHHHHcC--------------CeEeCCH
Confidence 45689999999999999999999999 899999997431 2223322 2345677
Q ss_pred HHHhc-CCCEEEEccCcchHHHHHHHHhc-cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-E----EEeCcch
Q 014739 139 ENAVK-DANMLVFVTPHQFMEGICKRLVG-KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-C----VLMGANI 211 (419)
Q Consensus 139 ~ea~~-~aDlVilavp~~~~~~vl~~l~~-~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-~----v~~gp~~ 211 (419)
++++. .+|+||+|||...+.++++++.. .++++++|++++.+-. ...+.+.+.++... . .+.|+..
T Consensus 419 ~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~-------~~~~~~~~~l~~~~~~v~~HPm~G~e~ 491 (667)
T PLN02712 419 DDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKE-------FPRNLFLQHLPQDFDILCTHPMFGPES 491 (667)
T ss_pred HHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccH-------HHHHHHHHhccCCCceEeeCCCCCccc
Confidence 66554 58999999999999999998875 5788999999864311 12344454443211 1 2233332
Q ss_pred HHHHHhcCc---eeEEEeec-CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHH---HHHHHHHHHHHhhhcCCCCccHH
Q 014739 212 ANEIAVEKF---SEATVGYR-DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCG---TLKNVVAIAAGFVDGLEMGNNTK 284 (419)
Q Consensus 212 a~e~~~g~~---~~~~~~~~-~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~---al~Ni~a~~~g~~~~~~~~~n~~ 284 (419)
........+ ....+++. ...+.++.+.+++...|.++...+.-.++...+ .+.|+++.+. ....+. .
T Consensus 492 ~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla~~L---~~~~~~---~ 565 (667)
T PLN02712 492 GKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMGRLL---EKLGLE---S 565 (667)
T ss_pred cccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHH---HHCCCc---c
Confidence 100000011 00122221 123556677799999998887765544444333 3444443222 111110 1
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 014739 285 AAIMRIGLREMRAFSKLLF 303 (419)
Q Consensus 285 ~~l~~~~~~E~~~la~a~g 303 (419)
..+...+++.+..+.+...
T Consensus 566 ~~~~~~gfr~l~~Li~Ria 584 (667)
T PLN02712 566 TPINTKGYETLLNLVENTA 584 (667)
T ss_pred cccccHHHHHHHHHHHhhc
Confidence 2345667777776666663
No 88
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.09 E-value=3.5e-09 Score=105.82 Aligned_cols=162 Identities=11% Similarity=0.084 Sum_probs=108.1
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 60 HKSKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..+||+|||. |.||+.+|..|.+. + ++|+.+|+..+ ...+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~-------~~V~g~D~~d~-------------------------------~~~~ 44 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQ-------LEVIGHDPADP-------------------------------GSLD 44 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCC-------CEEEEEcCCcc-------------------------------ccCC
Confidence 3579999999 99999999999875 5 78888886421 1234
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhcc---CCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcch
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVGK---VNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANI 211 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~---l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~ 211 (419)
+++.+.+||+||+|||...+.++++++.++ ++++++|+++.. + + ..+.+.+.+. +.+ ...+.||..
T Consensus 45 ~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~iVtDVgS-v---K---~~i~~~~~~~-~~~fVG~HPMaG~E~ 116 (370)
T PRK08818 45 PATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQLWLDVTS-I---K---QAPVAAMLAS-QAEVVGLHPMTAPPK 116 (370)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCeEEEECCC-C---c---HHHHHHHHhc-CCCEEeeCCCCCCCC
Confidence 556688999999999999999999999875 789999988753 1 0 1122222221 111 123444432
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHH---HHHHHHH
Q 014739 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTL---KNVVAIA 270 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al---~Ni~a~~ 270 (419)
. ....|+...++.. . ..+..++++++++..|.++...+--.++...+.+ .|+.+++
T Consensus 117 s-~lf~g~~~iltp~-~-~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~ 175 (370)
T PRK08818 117 S-PTLKGRVMVVCEA-R-LQHWSPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLA 175 (370)
T ss_pred C-cccCCCeEEEeCC-C-chhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2345654433322 2 4555788899999999998887766666665554 4654443
No 89
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.09 E-value=5.5e-09 Score=100.74 Aligned_cols=156 Identities=19% Similarity=0.172 Sum_probs=103.9
Q ss_pred CeEEEECcch--------------------HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCc
Q 014739 62 SKVTVVGSGN--------------------WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVK 121 (419)
Q Consensus 62 mkI~IIGaG~--------------------mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~ 121 (419)
|||.|.|+|+ -|.+||.+|+++| |+|++|||+++..+. +..+.+.+.|
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAG-------heV~V~Drnrsa~e~-e~~e~LaeaG---- 68 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAG-------HDVVLAEPNREFMSD-DLWKKVEDAG---- 68 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCC-------CEEEEEeCChhhhhh-hhhHHHHHCC----
Confidence 7899999997 4889999999999 999999998653100 1123455544
Q ss_pred cCCCCccCCCeEecCCHHHHhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh-
Q 014739 122 YLPGIKLGKNVVADPDLENAVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL- 199 (419)
Q Consensus 122 ~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~- 199 (419)
+..++++.++++++|+||+|+|. .+++++++.+.+.+++|++||++++ +++ ..+...+++.+
T Consensus 69 ----------A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~ST-IsP-----~t~~~~~e~~l~ 132 (341)
T TIGR01724 69 ----------VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCT-VSP-----VVLYYSLEKILR 132 (341)
T ss_pred ----------CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCC-CCH-----HHHHHHHHHHhh
Confidence 34667788889999999999998 5688998889999999999999875 443 33444454422
Q ss_pred -C-CceEEE-eC----cchHHHHHhcCceeEEEeec-------CCHHHHHHHHHHhCCCCcEEEEc
Q 014739 200 -G-VSCCVL-MG----ANIANEIAVEKFSEATVGYR-------DNREIAEKWVQLFSTPYFMVTAV 251 (419)
Q Consensus 200 -g-~~~~v~-~g----p~~a~e~~~g~~~~~~~~~~-------~~~~~~~~l~~ll~~~g~~~~~~ 251 (419)
+ .+..+. .. |+...+ + .+++++. .+++.++++.++.++.+...+..
T Consensus 133 ~~r~d~~v~s~HP~~vP~~~~~---~---~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 133 LKRTDVGISSMHPAAVPGTPQH---G---HYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred cCccccCeeccCCCCCCCCCCC---c---eeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 2 111111 11 222111 1 1122221 36889999999998877665553
No 90
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.05 E-value=1.3e-08 Score=96.80 Aligned_cols=134 Identities=17% Similarity=0.172 Sum_probs=101.6
Q ss_pred ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCC
Q 014739 92 DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGD 171 (419)
Q Consensus 92 ~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~ 171 (419)
++|.+++|++++ .+.+.+.- ++..+.+..+++.++|+||+|||+++++++++++.+.+.++
T Consensus 10 ~~I~v~~R~~e~------~~~l~~~~-------------g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~ 70 (245)
T TIGR00112 10 YDIIVINRSPEK------LAALAKEL-------------GIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKD 70 (245)
T ss_pred CeEEEEcCCHHH------HHHHHHHc-------------CcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCC
Confidence 789999998765 45554320 13455677777789999999999999999999999877778
Q ss_pred cEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014739 172 VEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 172 tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
++|||+.+|+.. +.+++.+|. ...++..|+.+..++.|. +.+..+...+.+..+.+.++|+..|..+++
T Consensus 71 ~~ivS~~agi~~---------~~l~~~~~~~~~ivR~mPn~~~~~~~g~-t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v 140 (245)
T TIGR00112 71 KLLISIAAGVTL---------EKLSQLLGGTRRVVRVMPNTPAKVGAGV-TAIAANANVSEEDRALVLALFKAVGEVVEL 140 (245)
T ss_pred CEEEEecCCCCH---------HHHHHHcCCCCeEEEECCChHHHHhCCe-EEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 999999999975 456666663 347788999988877763 444444444567788999999999988877
Q ss_pred cCcH
Q 014739 251 VQDV 254 (419)
Q Consensus 251 ~~di 254 (419)
.++.
T Consensus 141 ~E~~ 144 (245)
T TIGR00112 141 PEAL 144 (245)
T ss_pred CHHH
Confidence 6553
No 91
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.96 E-value=8.9e-09 Score=111.91 Aligned_cols=175 Identities=14% Similarity=0.081 Sum_probs=113.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCc--chH---HHHHHhcCcCCccCCCCccCCCeEe
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSG--EKL---TDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~--~~l---~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
.+.||+|||+|.||..+|..++.+| ++|+++|++++..+. +.+ .+...+.|.... ..-.....+++.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G-------~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~-~~~~~~~~~i~~ 383 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKG-------VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDG-AKMAGVLSSIRP 383 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCC-------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhHHHHHhCeEE
Confidence 4578999999999999999999999 999999998764110 011 111111221100 000012346788
Q ss_pred cCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--EEeC
Q 014739 135 DPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--VLMG 208 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v~~g 208 (419)
+++.++ +.+||+||-|++. ....+++.++.+.+++++++.+.|.+++++ .+.+.... ++. ....
T Consensus 384 ~~~~~~-~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~---------~la~~~~~p~r~~g~Hff~ 453 (715)
T PRK11730 384 TLDYAG-FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS---------LLAKALKRPENFCGMHFFN 453 (715)
T ss_pred eCCHHH-hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---------HHHhhcCCCccEEEEecCC
Confidence 888854 7999999999998 567888999999999999999998887652 23333332 221 1223
Q ss_pred cchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHH
Q 014739 209 ANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGV 257 (419)
Q Consensus 209 p~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~ 257 (419)
|.+.. ....++.+...+.+.++++.++++..|.......|..|-
T Consensus 454 P~~~~-----~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 454 PVHRM-----PLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred ccccc-----ceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 33211 111223333346788888999888888776666676553
No 92
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.95 E-value=1.3e-08 Score=98.87 Aligned_cols=172 Identities=16% Similarity=0.136 Sum_probs=108.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCc--chHH---HHHHhcCcCCccCCCCccCCCeEe
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSG--EKLT---DVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~--~~l~---~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
.++||+|||+|.||+.+|..++.+| ++|+++|++++.+++ ..+. +...+.|.- ....-.....+++.
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G-------~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l-~~~~~~~~l~~i~~ 73 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAG-------YDVVLKDISPEALERALAYIEKNLEKLVEKGKL-TEEEADAALARITP 73 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcC-------CceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCC-ChhhHHHHHhhccc
Confidence 4689999999999999999999988 999999998654110 1111 111111210 00000112345666
Q ss_pred cCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh--CCceE--EEeC
Q 014739 135 DPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL--GVSCC--VLMG 208 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~--g~~~~--v~~g 208 (419)
++++. ++.+||+||-+++. .-.+.++.++..++++++++-|.|++++++ .+.+.. +.++. -...
T Consensus 74 ~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it---------~ia~~~~rper~iG~HFfN 143 (307)
T COG1250 74 TTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT---------ELAEALKRPERFIGLHFFN 143 (307)
T ss_pred cCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH---------HHHHHhCCchhEEEEeccC
Confidence 67776 58999999999998 567788899999999999999999988763 222222 22221 2233
Q ss_pred cchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014739 209 ANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 209 p~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
|...- .+..++.+...+++.++++.++..+.|.......|.
T Consensus 144 P~~~m-----~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~ 184 (307)
T COG1250 144 PVPLM-----PLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDV 184 (307)
T ss_pred CCCcc-----eeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCC
Confidence 43221 111223333346788999999988877444443443
No 93
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.92 E-value=1.8e-08 Score=109.23 Aligned_cols=175 Identities=11% Similarity=0.053 Sum_probs=113.4
Q ss_pred CcCeEEEECcchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCCCCCcchHHHHH----H---hcCcCCccCCCCccCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEETLPSGEKLTDVI----N---RTNENVKYLPGIKLGKN 131 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i----~---~~g~~~~~~~~~~l~~~ 131 (419)
.++||+|||+|.||+.+|..++ ++| ++|+++|.+++.. ++..+.+ . +.+.-.. ........+
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G-------~~V~l~d~~~~~l--~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 372 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAG-------IPVRIKDINPQGI--NNALKYAWKLLDKGVKRRHMTP-AERDNQMAL 372 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcC-------CeEEEEeCCHHHH--HHHHHHHHHHHHHHHHcCCCCH-HHHHHHHcC
Confidence 4578999999999999999998 589 9999999987541 1111111 1 1111000 000012246
Q ss_pred eEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--E
Q 014739 132 VVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--V 205 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v 205 (419)
++.+++.+ ++.+||+||-|+|. ....+++.++.+.+++++++.+.|.+++++ + +.+.+.. ++. -
T Consensus 373 i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--------~-la~~~~~p~r~~g~H 442 (699)
T TIGR02440 373 ITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--------Q-IAAAASRPENVIGLH 442 (699)
T ss_pred eEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--------H-HHHhcCCcccEEEEe
Confidence 77888886 57899999999998 567788899999999999999999888753 2 2232322 221 1
Q ss_pred EeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHH
Q 014739 206 LMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVEL 259 (419)
Q Consensus 206 ~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~ 259 (419)
...|.+.. ....++.+...+++.++++.++++..|.......|..|-..
T Consensus 443 ffnP~~~~-----~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGfi~ 491 (699)
T TIGR02440 443 YFSPVEKM-----PLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYV 491 (699)
T ss_pred cCCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccchHH
Confidence 22333211 11223333334788999999999988887776677655433
No 94
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=98.91 E-value=1.4e-09 Score=110.00 Aligned_cols=223 Identities=17% Similarity=0.143 Sum_probs=128.2
Q ss_pred CeEEEECcchHHH-HHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcC-CccC-CC--CccCCCeEec-
Q 014739 62 SKVTVVGSGNWGS-VASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNEN-VKYL-PG--IKLGKNVVAD- 135 (419)
Q Consensus 62 mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~-~~~~-~~--~~l~~~i~~~- 135 (419)
|||.++|+|+||. .++..|+++| ++|++++++++. +++|+++|+- +... ++ .....++...
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g-------~~V~~vd~~~~~------v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~ 67 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG-------FEVTFVDVNQEL------IDALNKRKSYQVIVVGENEQVETVSNVSAIN 67 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC-------CeEEEEECCHHH------HHHHhcCCCeEEEEecCCCcEEEEeeEeeeC
Confidence 7999999999998 5588999999 999999987766 8999988742 1111 11 1111123333
Q ss_pred -CCHHH---HhcCCCEEEEccCcchHHHHHHHHhccCCCCc--------EEEEeecCcccCCCCcccHHHHHHhHh----
Q 014739 136 -PDLEN---AVKDANMLVFVTPHQFMEGICKRLVGKVNGDV--------EAISLIKGMEVKREGPCMISTLISEQL---- 199 (419)
Q Consensus 136 -~~~~e---a~~~aDlVilavp~~~~~~vl~~l~~~l~~~t--------iivs~~nGi~~~~~~~~~~~~~i~~~~---- 199 (419)
.+.++ .+.++|+|+++|+....+++...|.+.|.+.. .|+++.||+.+. ..+.+.+.+..
T Consensus 68 ~~~~~~~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng----~~L~~~V~~~~~~~~ 143 (381)
T PRK02318 68 SADEEAVIEAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGT----SFLKKHVLKALSEDE 143 (381)
T ss_pred CCCHHHHHHHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHH----HHHHHHHHHhCCHHH
Confidence 12232 34588999999999888888888777664433 789999999874 33333332221
Q ss_pred --------CCc--eEEEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCC-----cEEEEcCcHHHHHHHHHHH
Q 014739 200 --------GVS--CCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPY-----FMVTAVQDVEGVELCGTLK 264 (419)
Q Consensus 200 --------g~~--~~v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g-----~~~~~~~di~~~e~~~al~ 264 (419)
+.+ .+-+.+|.... .+. +.+. .++..+++.+.....+ ..+.+++|+...+|.|+..
T Consensus 144 ~~wi~~~~~f~~t~VDrI~P~~~~---~d~---~~v~---~E~f~~wviE~~~~~~~~p~~~~v~~~~dv~~~~~~Kl~~ 214 (381)
T PRK02318 144 KAWLEEHVGFVDSAVDRIVPAQKN---EDP---LDVT---VEPFSEWIVDKTQFKGALPKIKGMEYVDNLMPFIERKLFT 214 (381)
T ss_pred HHHHHhcCCCCCcHHhcCCCCCCc---cCC---cccc---cccceEEEEecccccCCCCCCCCcEEccCccHHHHHHHHh
Confidence 100 11122231100 000 0000 0111112211111111 1577889999999999976
Q ss_pred HHHHH----HHHhhhcCC-----CCccHHHHHHHHHHHHHHHHHHHhcCCCCccch
Q 014739 265 NVVAI----AAGFVDGLE-----MGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTF 311 (419)
Q Consensus 265 Ni~a~----~~g~~~~~~-----~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~ 311 (419)
|.... ..|...+.+ +.+.....++...+.|+..++.+.. |++++.+
T Consensus 215 ln~~ha~~A~~g~l~G~~tv~ea~~d~~~~~~v~~l~~E~~~v~~~~~-g~~~~~l 269 (381)
T PRK02318 215 VNTGHATTAYLGYLKGYKTIREAILDPSIRAVVKGALEESGAVLIKKY-GFDKEEH 269 (381)
T ss_pred ccHHHHHHHHHHHHcCcchHHHHHcCHHHHHHHHHHHHHHHhhcCCcC-CcCHHHH
Confidence 53221 223333332 2234556788889999999996432 4654433
No 95
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.90 E-value=2.1e-08 Score=108.84 Aligned_cols=174 Identities=13% Similarity=0.083 Sum_probs=113.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH-------hcCcCCccCCCCccCCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN-------RTNENVKYLPGIKLGKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~-------~~g~~~~~~~~~~l~~~ 131 (419)
..+.||+|||+|.||..+|..++.+| ++|++++++++.. ++..+.+. +.|.. ..........+
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G-------~~V~l~d~~~~~l--~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 380 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKG-------TPIVMKDINQHSL--DLGLTEAAKLLNKQVERGRI-TPAKMAGVLNG 380 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCC-------CeEEEEeCCHHHH--HHHHHHHHHHHHHHHHcCCC-ChhhHHHHHhC
Confidence 35679999999999999999999999 9999999987641 11111111 11110 00000011245
Q ss_pred eEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--E
Q 014739 132 VVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--V 205 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v 205 (419)
++.+++.+ .+.+||+||-|++. ....+++.++.+.+++++++.+.|.+++++ .+.+.... ++. -
T Consensus 381 i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~---------~ia~~~~~p~r~ig~H 450 (714)
T TIGR02437 381 ITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS---------LLAKALKRPENFCGMH 450 (714)
T ss_pred eEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---------HHHhhcCCcccEEEEe
Confidence 77788885 47899999999998 567888999999999999999998887752 23333322 221 1
Q ss_pred EeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHH
Q 014739 206 LMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGV 257 (419)
Q Consensus 206 ~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~ 257 (419)
...|.+.. ....++.+...+.+.++++.+++...|.......|..|-
T Consensus 451 ff~P~~~~-----~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (714)
T TIGR02437 451 FFNPVHRM-----PLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGF 497 (714)
T ss_pred cCCCcccC-----ceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccc
Confidence 22333211 111223333346788899999988888776666676543
No 96
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.88 E-value=2.2e-08 Score=108.76 Aligned_cols=174 Identities=14% Similarity=0.035 Sum_probs=111.2
Q ss_pred CcCeEEEECcchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCCCCCc--ch---HHHHHHhcCcCCccCCCCccCCCeE
Q 014739 60 HKSKVTVVGSGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEETLPSG--EK---LTDVINRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~~~~~--~~---l~~~i~~~g~~~~~~~~~~l~~~i~ 133 (419)
..+||+|||+|.||..+|..++ .+| ++|+++|++++..+. +. ..+...+.+.... ........+++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G-------~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~i~ 379 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAG-------LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKP-SERDKQMALIS 379 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcC-------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHhcEE
Confidence 4679999999999999999999 889 999999998754100 00 1111111111000 00001234678
Q ss_pred ecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--EEe
Q 014739 134 ADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--VLM 207 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v~~ 207 (419)
.+++.+ ++.+||+||-|++. ....+++.++.+.+++++++.+.|.+++++ .+.+.... ++. -..
T Consensus 380 ~~~~~~-~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~---------~la~~~~~p~r~ig~Hff 449 (708)
T PRK11154 380 GTTDYR-GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG---------QIAAAAARPEQVIGLHYF 449 (708)
T ss_pred EeCChH-HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---------HHHHhcCcccceEEEecC
Confidence 888885 57999999999998 567888999999999999999999888753 22232222 221 122
Q ss_pred CcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHH
Q 014739 208 GANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEG 256 (419)
Q Consensus 208 gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~ 256 (419)
.|.+.. ....++.+...+.+.++.+.+++...|.......|..|
T Consensus 450 ~P~~~~-----~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG 493 (708)
T PRK11154 450 SPVEKM-----PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG 493 (708)
T ss_pred CccccC-----ceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc
Confidence 333211 11223444444678888888888888876555556443
No 97
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.87 E-value=1.6e-08 Score=110.07 Aligned_cols=173 Identities=12% Similarity=0.047 Sum_probs=112.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-------cCcCCccCCCCccCCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-------TNENVKYLPGIKLGKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-------~g~~~~~~~~~~l~~~ 131 (419)
..+.||+|||+|.||+.+|..++.+| ++|+++|++++.. ++..+.+.+ .|.- ..........+
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G-------~~V~l~d~~~~~l--~~~~~~i~~~l~~~~~~g~~-~~~~~~~~~~~ 402 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKG-------LKTVLKDATPAGL--DRGQQQVFKGLNKKVKRKKI-TSLERDSILSN 402 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCC-------CcEEEecCCHHHH--HHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhC
Confidence 45678999999999999999999999 9999999987651 111111211 1110 00000012346
Q ss_pred eEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--E
Q 014739 132 VVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--V 205 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v 205 (419)
++.+++.+ ++.+||+||-+|+. ....+++.++.+.+++++++.+.|.+++++ .+.+.... ++. -
T Consensus 403 i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~---------~la~~~~~p~r~ig~H 472 (737)
T TIGR02441 403 LTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK---------DIAAVSSRPEKVIGMH 472 (737)
T ss_pred eEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---------HHHhhcCCccceEEEe
Confidence 77888886 47899999999998 567788899999999999999998887652 23333322 221 1
Q ss_pred EeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHH
Q 014739 206 LMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEG 256 (419)
Q Consensus 206 ~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~ 256 (419)
...|.+.. ....++.+...+.+.++++.+++...|.......|..|
T Consensus 473 ff~P~~~m-----~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG 518 (737)
T TIGR02441 473 YFSPVDKM-----QLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG 518 (737)
T ss_pred ccCCcccC-----ceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC
Confidence 22333211 11223333334678888888888888877666666544
No 98
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=6.8e-08 Score=94.67 Aligned_cols=210 Identities=17% Similarity=0.075 Sum_probs=126.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+.|++||+|.||+-+|.+.+++| +.|.+++|++++ .+++-+..... .++..+.+++
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G-------~~VavyNRt~~k------td~f~~~~~~~---------k~i~~~~sie 59 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHG-------YTVAVYNRTTEK------TDEFLAERAKG---------KNIVPAYSIE 59 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcC-------ceEEEEeCCHHH------HHHHHHhCccC---------CCccccCcHH
Confidence 3467999999999999999999999 999999999887 56554432211 1233445565
Q ss_pred HH---hcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHH
Q 014739 140 NA---VKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEI 215 (419)
Q Consensus 140 ea---~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~ 215 (419)
|. ++...-|+++|++ ..++.++++|.|+|.++.++|+--|..-. +|.+...+ +.+ .|..+ +-.|-+-.++.
T Consensus 60 efV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~--DT~RR~~e-L~~-~Gi~F-vG~GVSGGEeG 134 (473)
T COG0362 60 EFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYK--DTIRRNKE-LSE-KGILF-VGMGVSGGEEG 134 (473)
T ss_pred HHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCc--hHHHHHHH-HHh-cCCeE-Eeccccccccc
Confidence 53 5678899999998 77899999999999999999998775543 22222221 222 13322 22222222222
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHH
Q 014739 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREM 295 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~ 295 (419)
+...|+ +++| + +.+.-+.++++|.....++. +++ ...|.+ .-|..+-.|..+|-.---=.+.++|+
T Consensus 135 A~~GPS-iMpG-G-~~eay~~v~pil~~IaAk~~--g~p-Cc~~iG--------~~GAGHfVKmVHNGIEYgDMQlIaE~ 200 (473)
T COG0362 135 ARHGPS-IMPG-G-QKEAYELVAPILTKIAAKVD--GEP-CCTWIG--------PDGAGHFVKMVHNGIEYGDMQLIAEA 200 (473)
T ss_pred cccCCC-cCCC-C-CHHHHHHHHHHHHHHHhhcC--CCC-ceeeEC--------CCCCCceeeeeecCchHHHHHHHHHH
Confidence 222243 3444 4 68888888888875332221 111 011100 00222233444554433446778888
Q ss_pred HHHHHHhcCCCCccch
Q 014739 296 RAFSKLLFSSVKDSTF 311 (419)
Q Consensus 296 ~~la~a~g~g~~~~~~ 311 (419)
..+.+... |...+.+
T Consensus 201 Y~ilk~~l-gls~~ei 215 (473)
T COG0362 201 YDILKDGL-GLSAEEI 215 (473)
T ss_pred HHHHHHhc-CCCHHHH
Confidence 88888743 5665544
No 99
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.83 E-value=4.3e-08 Score=93.92 Aligned_cols=166 Identities=14% Similarity=0.083 Sum_probs=98.0
Q ss_pred HHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCCCEEEEccCcc
Q 014739 76 ASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 76 lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~~ 155 (419)
+|..|.++|. .++|+.||++++. .+.-.+.|.. -...++ .+++.++|+||+|||..
T Consensus 1 ~A~aL~~~g~-----~~~v~g~d~~~~~------~~~a~~~g~~------------~~~~~~-~~~~~~~DlvvlavP~~ 56 (258)
T PF02153_consen 1 IALALRKAGP-----DVEVYGYDRDPET------LEAALELGII------------DEASTD-IEAVEDADLVVLAVPVS 56 (258)
T ss_dssp HHHHHHHTTT-----TSEEEEE-SSHHH------HHHHHHTTSS------------SEEESH-HHHGGCCSEEEE-S-HH
T ss_pred ChHHHHhCCC-----CeEEEEEeCCHHH------HHHHHHCCCe------------eeccCC-HhHhcCCCEEEEcCCHH
Confidence 5788999981 1456666666543 2333233421 123333 45689999999999999
Q ss_pred hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--c---eEEEeCc-----chHH-HHHhcCceeEE
Q 014739 156 FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--S---CCVLMGA-----NIAN-EIAVEKFSEAT 224 (419)
Q Consensus 156 ~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~---~~v~~gp-----~~a~-e~~~g~~~~~~ 224 (419)
.+.++++++.++++++++|+++.. + ...+.+.+++..+. . ...+.|| ..+. +.+.|+...++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~S-v------K~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~ 129 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGS-V------KAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILC 129 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S--------CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEE
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCC-C------CHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEe
Confidence 999999999999999999998753 2 12334555555541 2 2455566 2222 45567755455
Q ss_pred EeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHH
Q 014739 225 VGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAG 272 (419)
Q Consensus 225 ~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g 272 (419)
.....+.+.++.+.++++..|.++...+.-.++...+. +.++++.+..
T Consensus 130 p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~ 180 (258)
T PF02153_consen 130 PGEDTDPEALELVEELWEALGARVVEMDAEEHDRIMAYVSHLPHLLASALA 180 (258)
T ss_dssp ECTTS-HHHHHHHHHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443567889999999999998887755555554443 4555554433
No 100
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=98.80 E-value=5.6e-08 Score=82.52 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=75.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCC----ccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcc
Q 014739 253 DVEGVELCGTLKNVVAIAAGFVDGLEMG----NNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGR 328 (419)
Q Consensus 253 di~~~e~~~al~Ni~a~~~g~~~~~~~~----~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~r 328 (419)
|+....|.|++.|....+.+...+...+ +.....++...+.|+.+++++.|..++++.+.+. +
T Consensus 1 di~~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~~~~~~l~~E~~~va~a~G~~l~~~~~~~~------~------- 67 (125)
T PF08546_consen 1 DIQRERWEKLIFNAAINPLTALTGCTNGELLENPEARELIRALMREVIAVARALGIPLDPDDLEEA------I------- 67 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHH------H-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHHHHHHHHHHHHHHHHHHhhccCcHHHHHHH------H-------
Confidence 6788899999999765555555554433 2345579999999999999999743333222110 0
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014739 329 NRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 329 n~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
..+-...+. ...+..+|+ .+|+.+|.+..+|.++++|+++|+ ++|.++++|++++.
T Consensus 68 -~~~~~~~~~-~~~SM~~D~----~~gr~tEid~i~G~vv~~a~~~gv--~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 68 -ERLIRSTPD-NRSSMLQDI----EAGRPTEIDYINGYVVRLAKKHGV--PTPVNETIYALVKA 123 (125)
T ss_dssp -HHHHHCTTT-T--HHHHHH----HTTB--SHHHTHHHHHHHHHHTT-----HHHHHHHHHHHH
T ss_pred -HHHHHhcCC-ccccHHHHH----HHcccccHHHHHHHHHHHHHHHCC--CCcHHHHHHHHHHH
Confidence 011111111 110124454 468999999999999999999999 99999999999874
No 101
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.78 E-value=8.6e-08 Score=92.10 Aligned_cols=199 Identities=13% Similarity=0.119 Sum_probs=123.3
Q ss_pred cccchhcccccccchhhhhhhhcccCCCCCCcccccccCCCCCCCC-CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCC
Q 014739 12 KQPFIRKRFPCFFHSLSLSSLFMAPAFEDNNSETLPSSFSSGSDDG-VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSF 90 (419)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~ 90 (419)
..|-+|..||.|..|.--+.++.|..-. ..-..|-+..-+. .....+|||||.|.||..+|..|.++|
T Consensus 7 s~p~l~~~~~t~~~~~p~~~~~~a~~~~-----~i~d~~~~~~s~~~~k~tl~IaIIGfGnmGqflAetli~aG------ 75 (480)
T KOG2380|consen 7 SPPNLRRNSPTFLISPPRSLRIRAIDAA-----QIFDYMVSEDSIEQWKATLVIAIIGFGNMGQFLAETLIDAG------ 75 (480)
T ss_pred CCCCcccCCCceeccCcHHHHHHhhhhh-----hhhhcccCcchhhhcccceEEEEEecCcHHHHHHHHHHhcC------
Confidence 3567888899887765444443331100 0001111111111 223358999999999999999999999
Q ss_pred CceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH-hcCCCEEEEccCcchHHHHHHHHhcc-C
Q 014739 91 HDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA-VKDANMLVFVTPHQFMEGICKRLVGK-V 168 (419)
Q Consensus 91 ~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea-~~~aDlVilavp~~~~~~vl~~l~~~-l 168 (419)
|.|...+|+. . .+.-+..|. ...+++.+. -+..|+|++||....++.++...-+. +
T Consensus 76 -h~li~hsRsd-y------ssaa~~yg~--------------~~ft~lhdlcerhpDvvLlctsilsiekilatypfqrl 133 (480)
T KOG2380|consen 76 -HGLICHSRSD-Y------SSAAEKYGS--------------AKFTLLHDLCERHPDVVLLCTSILSIEKILATYPFQRL 133 (480)
T ss_pred -ceeEecCcch-h------HHHHHHhcc--------------cccccHHHHHhcCCCEEEEEehhhhHHHHHHhcCchhh
Confidence 9999999876 3 122222221 122334333 35899999999999999999877665 7
Q ss_pred CCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-----eEEEeCcchHHHHHhcCceeEE---Eeec-CCHHHHHHHHH
Q 014739 169 NGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-----CCVLMGANIANEIAVEKFSEAT---VGYR-DNREIAEKWVQ 239 (419)
Q Consensus 169 ~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-----~~v~~gp~~a~e~~~g~~~~~~---~~~~-~~~~~~~~l~~ 239 (419)
+.+++++..+.--. ...+.+.+.+|.+ +..+.||...++-.+|.|-.+. ++.. .-.+.++.+.+
T Consensus 134 rrgtlfvdvlSvKe-------fek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fle 206 (480)
T KOG2380|consen 134 RRGTLFVDVLSVKE-------FEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLE 206 (480)
T ss_pred ccceeEeeeeecch-------hHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHH
Confidence 77899987753111 1134555666643 3456788866655566554221 1110 12688999999
Q ss_pred HhCCCCcEEEE
Q 014739 240 LFSTPYFMVTA 250 (419)
Q Consensus 240 ll~~~g~~~~~ 250 (419)
+|.+.|.+...
T Consensus 207 If~cegckmVe 217 (480)
T KOG2380|consen 207 IFACEGCKMVE 217 (480)
T ss_pred HHHhcCCeEEE
Confidence 99988876443
No 102
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.74 E-value=1.9e-07 Score=86.90 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=113.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|+|++||+|.|..+++..+.+.|...+ +.+.....+... ....++..| ++.+.+..+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~---~~i~~s~~~~~~-----~~~~~~~~g--------------~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEA---NRIWASVQTERS-----LGLMFEALG--------------VKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCch---hheeeecCchhh-----hhhhhhcCC--------------ceeeechHHH
Confidence 689999999999999999999984332 333333331111 011234433 2233333667
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHhcCc
Q 014739 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEKF 220 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~g~~ 220 (419)
++.+|++++++|++.++.++.++.+.+..+++++++.-|+.. .-+.+.++.+ -.+...|+.+..++.|.
T Consensus 59 ~~~s~v~~~svKp~~i~~vls~~~~~~~~~~iivS~aaG~tl---------~~l~~~l~~~~rviRvmpNtp~~v~eg~- 128 (267)
T KOG3124|consen 59 LQASDVVFLSVKPQVIESVLSEIKPKVSKGKIIVSVAAGKTL---------SSLESKLSPPTRVIRVMPNTPSVVGEGA- 128 (267)
T ss_pred HhhccceeEeecchhHHHHhhcCccccccceEEEEEeecccH---------HHHHHhcCCCCceEEecCCChhhhhcCc-
Confidence 889999999999999999999998877789999999988764 2344445532 36677788888777775
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHH
Q 014739 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVE 255 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~ 255 (419)
+.+..+.....++.+.++++|...|+.....++..
T Consensus 129 sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~i 163 (267)
T KOG3124|consen 129 SVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCI 163 (267)
T ss_pred EEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhh
Confidence 34455554456777889999999999888776643
No 103
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.73 E-value=7.3e-08 Score=84.33 Aligned_cols=94 Identities=13% Similarity=0.187 Sum_probs=67.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.++|+|||.|+.|.+.|.+|.++| .+|.+-.|+... . .+..++.|. + ..+.+|
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG-------~~V~Vglr~~s~----s-~~~A~~~Gf--------------~-v~~~~e 56 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSG-------VNVIVGLREGSA----S-WEKAKADGF--------------E-VMSVAE 56 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC--------EEEEEE-TTCH----H-HHHHHHTT---------------E-CCEHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCC-------CCEEEEecCCCc----C-HHHHHHCCC--------------e-eccHHH
Confidence 468999999999999999999999 899999988652 0 344444442 2 246778
Q ss_pred HhcCCCEEEEccCcchHHHHH-HHHhccCCCCcEEEEeecCcc
Q 014739 141 AVKDANMLVFVTPHQFMEGIC-KRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl-~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++.+|+|++.+|+....++. ++|.|.++++++++... |..
T Consensus 57 Av~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~~L~fah-Gfn 98 (165)
T PF07991_consen 57 AVKKADVVMLLLPDEVQPEVYEEEIAPNLKPGATLVFAH-GFN 98 (165)
T ss_dssp HHHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-EEEESS-SHH
T ss_pred HHhhCCEEEEeCChHHHHHHHHHHHHhhCCCCCEEEeCC-cch
Confidence 899999999999999999998 78999999998876543 443
No 104
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.71 E-value=9.8e-08 Score=94.57 Aligned_cols=94 Identities=15% Similarity=0.255 Sum_probs=73.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-|+|+|||+|.||..+|..|...| ++|.+|+|+++. .... +....+++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G-------~~V~~~d~~~~~------~~~~------------------~~~~~~l~ 193 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFG-------ATITAYDAYPNK------DLDF------------------LTYKDSVK 193 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEeCChhH------hhhh------------------hhccCCHH
Confidence 4468999999999999999999999 899999987643 1110 12345788
Q ss_pred HHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 140 NAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++.++|+|++++|.. +...++ +.+.+.+++++++|+...|-...
T Consensus 194 ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd 240 (330)
T PRK12480 194 EAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVIN 240 (330)
T ss_pred HHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccC
Confidence 8899999999999974 344444 56778889999999999987764
No 105
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.66 E-value=1.5e-07 Score=91.46 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=71.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|+||.++|.+|...| ++|.+|+|.... .+.....| ++. .+++
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G-------~~ViV~~r~~~s------~~~A~~~G--------------~~v-~sl~ 66 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSG-------VEVVVGVRPGKS------FEVAKADG--------------FEV-MSVS 66 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCc-------CEEEEEECcchh------hHHHHHcC--------------CEE-CCHH
Confidence 3468999999999999999999999 899999875322 22222222 223 3688
Q ss_pred HHhcCCCEEEEccCcchHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014739 140 NAVKDANMLVFVTPHQFMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++.||+|++++|....+.++ +++.+.++++++++.. -|..+
T Consensus 67 Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~-hgfni 110 (335)
T PRK13403 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFS-HGFNI 110 (335)
T ss_pred HHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEEC-CCcce
Confidence 8899999999999986667877 4688889988866543 36654
No 106
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.60 E-value=9.8e-07 Score=86.90 Aligned_cols=193 Identities=10% Similarity=0.046 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCC-----cchHHHHHH-------hcCcCCccCCCCccCCCeEecCC--
Q 014739 72 WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPS-----GEKLTDVIN-------RTNENVKYLPGIKLGKNVVADPD-- 137 (419)
Q Consensus 72 mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~-----~~~l~~~i~-------~~g~~~~~~~~~~l~~~i~~~~~-- 137 (419)
||+.+|..++.+| ++|+++|++++..+ .+...+.+. +.|...... -.....+++.+++
T Consensus 1 MG~giA~~~a~~G-------~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~ 72 (314)
T PRK08269 1 MGQGIALAFAFAG-------HDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQ-ADAVLARIAVVARDG 72 (314)
T ss_pred CcHHHHHHHHhCC-------CeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhh-HHHHHhCeEeecCcc
Confidence 7999999999999 99999999985310 011112221 112110000 0012245666654
Q ss_pred HHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--EEeCcch
Q 014739 138 LENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--VLMGANI 211 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v~~gp~~ 211 (419)
+.+++.+||+||.|++. .....++.++.+.+++++++.|.+.++.+ ..+.+.... ++. ....|.+
T Consensus 73 ~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~---------~~la~~~~~p~r~~g~Hf~~Pp~ 143 (314)
T PRK08269 73 AADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLV---------TDLQRHVAHPERFLNAHWLNPAY 143 (314)
T ss_pred hHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCH---------HHHHhhcCCcccEEEEecCCccc
Confidence 56778999999999997 44556678898989999999877766653 233333322 111 1122222
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHH
Q 014739 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIG 291 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~ 291 (419)
.. ....++.+...+.+.++++.+++...|..+....|..+ +....+....
T Consensus 144 ~~-----~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~G-------------------------fi~nri~~~~ 193 (314)
T PRK08269 144 LM-----PLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPG-------------------------YIVPRIQALA 193 (314)
T ss_pred cC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC-------------------------cchHHHHHHH
Confidence 11 11112222234788999999999988877766655322 2234567888
Q ss_pred HHHHHHHHHHhcCCCCccchhc
Q 014739 292 LREMRAFSKLLFSSVKDSTFFE 313 (419)
Q Consensus 292 ~~E~~~la~a~g~g~~~~~~~~ 313 (419)
++|+..++++. +++++++..
T Consensus 194 l~EAl~l~e~g--~~~~e~iD~ 213 (314)
T PRK08269 194 MNEAARMVEEG--VASAEDIDK 213 (314)
T ss_pred HHHHHHHHHhC--CCCHHHHHH
Confidence 99999999987 478877754
No 107
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.51 E-value=5.5e-07 Score=89.37 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=69.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-|+|+|||+|.||..+|..|++ .| .+|..|+++... .... . +...+++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g-------~~V~~~d~~~~~--------~~~~-~--------------~~~~~~l 194 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYG-------SDVVAYDPFPNA--------KAAT-Y--------------VDYKDTI 194 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-------CEEEEECCCccH--------hHHh-h--------------ccccCCH
Confidence 34789999999999999999954 45 678888776532 1111 1 2234578
Q ss_pred HHHhcCCCEEEEccCcch-HHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 139 ENAVKDANMLVFVTPHQF-MEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~-~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++++|+|++++|... .+.++ ++..+.+++++++|.+++|....
T Consensus 195 ~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd 242 (332)
T PRK08605 195 EEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVD 242 (332)
T ss_pred HHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccC
Confidence 888999999999999744 44333 44567788999999999987654
No 108
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.47 E-value=4.3e-06 Score=79.88 Aligned_cols=217 Identities=16% Similarity=0.180 Sum_probs=132.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc------cCCCeEe
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK------LGKNVVA 134 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~------l~~~i~~ 134 (419)
|+||+-||+|.+|++-...++..- .+.+|+++|.+..+ +.+++... .+.|.|+.. -..++-+
T Consensus 1 ~~kiccigagyvggptcavia~kc-----p~i~vtvvd~s~~r------i~~wnsd~-lpiyepgldevv~~crgknlff 68 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKC-----PDIEVTVVDISVPR------INAWNSDK-LPIYEPGLDEVVKQCRGKNLFF 68 (481)
T ss_pred CceEEEecCcccCCcchheeeecC-----CceEEEEEecCchH------hhcccCCC-CcccCCCHHHHHHHhcCCceee
Confidence 579999999999999988887664 12578899988765 56666543 345666652 1356778
Q ss_pred cCCHHHHhcCCCEEEEccCcc---------------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh
Q 014739 135 DPDLENAVKDANMLVFVTPHQ---------------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL 199 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~---------------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~ 199 (419)
.+|.+.++.++|+||++|... +.+++...|+..-..+++++--+. ++. ..++.++..+
T Consensus 69 stdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekst-vpv------~aaesi~~il 141 (481)
T KOG2666|consen 69 STDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKST-VPV------KAAESIEKIL 141 (481)
T ss_pred ecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeecc-ccc------hHHHHHHHHH
Confidence 899999999999999998642 577777778877666777765432 322 2345555544
Q ss_pred C-----CceEEEeCcchHHHHH----hcCceeEEEeecCCH---HHHHHHHHHhCCCCc-EEEEcCcHHHHHHHHHHHHH
Q 014739 200 G-----VSCCVLMGANIANEIA----VEKFSEATVGYRDNR---EIAEKWVQLFSTPYF-MVTAVQDVEGVELCGTLKNV 266 (419)
Q Consensus 200 g-----~~~~v~~gp~~a~e~~----~g~~~~~~~~~~~~~---~~~~~l~~ll~~~g~-~~~~~~di~~~e~~~al~Ni 266 (419)
. .++.+++.|.+..|.. .-.|..+.+|+.... ..++.+..++.+.-- .-.++.+....|++|+..|.
T Consensus 142 ~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaana 221 (481)
T KOG2666|consen 142 NHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANA 221 (481)
T ss_pred hcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHH
Confidence 3 3578999998765421 122456677776223 344555566654321 12234455566777766554
Q ss_pred HHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHh
Q 014739 267 VAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302 (419)
Q Consensus 267 ~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~ 302 (419)
+.. ... -..|.+.++..+--+|+..++.+.
T Consensus 222 fla-----qri-ssins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 222 FLA-----QRI-SSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred HHH-----HHH-hhhHHHHHHHHhcCCCHHHHHHHh
Confidence 310 000 012444444444445555555555
No 109
>PRK07574 formate dehydrogenase; Provisional
Probab=98.46 E-value=1.2e-06 Score=88.34 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=74.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|+.|..-| .+|..|+|.+.. .+.....+ +....+++
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG-------~~V~~~dr~~~~------~~~~~~~g--------------~~~~~~l~ 243 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFD-------VKLHYTDRHRLP------EEVEQELG--------------LTYHVSFD 243 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEECCCCCc------hhhHhhcC--------------ceecCCHH
Confidence 3478999999999999999999888 899999987633 12112211 23345788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014739 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++.||+|++++|. ..++.++ ++....+++++++|.+..|-..
T Consensus 244 ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV 289 (385)
T PRK07574 244 SLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIV 289 (385)
T ss_pred HHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchh
Confidence 889999999999995 6677777 4466778999999999877654
No 110
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.46 E-value=2.1e-06 Score=78.58 Aligned_cols=166 Identities=10% Similarity=0.113 Sum_probs=101.4
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||. |.||..++..|.++| ++|+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g-------~~v~--------------------------------------------- 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG-------LGVY--------------------------------------------- 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC-------CEEE---------------------------------------------
Confidence 69999998 999999999999999 6543
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHH-HHhcC
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANE-IAVEK 219 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e-~~~g~ 219 (419)
+.+||+||+|+|...+.++++++.+ +++++.. + + ..+.+...+.+| ...+.||..+.. +. .
T Consensus 29 -~~~~DlVilavPv~~~~~~i~~~~~------~v~Dv~S-v---K---~~i~~~~~~~vg--~HPMfGp~~a~~~lf--~ 90 (197)
T PRK06444 29 -IKKADHAFLSVPIDAALNYIESYDN------NFVEISS-V---K---WPFKKYSGKIVS--IHPLFGPMSYNDGVH--R 90 (197)
T ss_pred -ECCCCEEEEeCCHHHHHHHHHHhCC------eEEeccc-c---C---HHHHHhcCCEEe--cCCCCCCCcCccccc--c
Confidence 1368999999999999999887652 5655532 1 1 111111111112 123456766542 12 1
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHH
Q 014739 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMR 296 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~ 296 (419)
..++.....+.+..+.++++++ |.++...+--.+++..+. +.++++.+... .+ ..+...+++.+.
T Consensus 91 -~~iv~~~~~~~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~ishLpH~ia~al~~---~~------~~~~t~~fr~l~ 158 (197)
T PRK06444 91 -TVIFINDISRDNYLNEINEMFR--GYHFVEMTADEHDLLMSEIMVKPYIISMILKD---IK------SDIKTGSFDKLL 158 (197)
T ss_pred -eEEEECCCCCHHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHHHHHHHHHHHHHcc---CC------CCCCCccHHHHH
Confidence 2222222235567788999998 667776655555554444 45554433221 11 234567899999
Q ss_pred HHHHHhcCCCCccc
Q 014739 297 AFSKLLFSSVKDST 310 (419)
Q Consensus 297 ~la~a~g~g~~~~~ 310 (419)
++++... +.+++-
T Consensus 159 ria~~~~-~~~p~l 171 (197)
T PRK06444 159 EVSEIKE-KENWEV 171 (197)
T ss_pred HHHHHhc-cCCHHH
Confidence 9998884 345543
No 111
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.46 E-value=1.5e-06 Score=85.44 Aligned_cols=105 Identities=18% Similarity=0.353 Sum_probs=69.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||||+|||+|.||..+|..++..| . +|.++|++++...++ ...+..... . ......++.+++.+
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~-------~~ev~L~D~~~~~~~~~--~~dl~~~~~-~-----~~~~~~i~~~~d~~ 66 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKE-------LGDVVLFDIVEGVPQGK--ALDIAEAAP-V-----EGFDTKITGTNDYE 66 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-------CeEEEEEECCCchhHHH--HHHHHhhhh-h-----cCCCcEEEeCCCHH
Confidence 689999999999999999999988 4 899999987651111 111111100 0 00122455566775
Q ss_pred HHhcCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 140 NAVKDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.+||+||+++.. ..++++++++.+.. ++.+++..+|.++
T Consensus 67 -~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d 123 (307)
T PRK06223 67 -DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVD 123 (307)
T ss_pred -HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 47899999999632 23566667777765 5677777787553
No 112
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.43 E-value=1.2e-06 Score=87.10 Aligned_cols=96 Identities=8% Similarity=0.123 Sum_probs=73.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|+.|...| .+|.+|+|++.. ......+ +. ..+++
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G-------~~V~~~d~~~~~-------~~~~~~~--------------~~-~~~l~ 199 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFG-------MRILYYSRTRKP-------EAEKELG--------------AE-YRPLE 199 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEECCCCCh-------hhHHHcC--------------CE-ecCHH
Confidence 4479999999999999999999999 899999987643 1111111 12 24678
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++..||+|++++|. ...+.++ ++....+++++++|.++.|-...
T Consensus 200 ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd 246 (333)
T PRK13243 200 ELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVD 246 (333)
T ss_pred HHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcC
Confidence 888999999999996 5566666 45667789999999998876553
No 113
>PLN03139 formate dehydrogenase; Provisional
Probab=98.42 E-value=1.5e-06 Score=87.52 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=75.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||.|.||..+|+.|..-| .+|..|+|.... .+.....+ +....++
T Consensus 197 L~gktVGIVG~G~IG~~vA~~L~afG-------~~V~~~d~~~~~------~~~~~~~g--------------~~~~~~l 249 (386)
T PLN03139 197 LEGKTVGTVGAGRIGRLLLQRLKPFN-------CNLLYHDRLKMD------PELEKETG--------------AKFEEDL 249 (386)
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCC-------CEEEEECCCCcc------hhhHhhcC--------------ceecCCH
Confidence 34479999999999999999999888 899999987533 12222212 2334578
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++..||+|++++|. ...+.++ +++...+++++++|.+..|-...
T Consensus 250 ~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVD 297 (386)
T PLN03139 250 DAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMD 297 (386)
T ss_pred HHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhh
Confidence 8888999999999995 6677776 45667789999999998775543
No 114
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.39 E-value=2.5e-06 Score=83.64 Aligned_cols=104 Identities=12% Similarity=0.230 Sum_probs=71.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|.||+.+|..|+..| + +|.++|+.++...++ .-.+...+. .......++.+++.++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g-------~~~VvlvDi~~~l~~g~--a~d~~~~~~------~~~~~~~i~~t~d~~~ 66 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKE-------LADLVLLDVVEGIPQGK--ALDMYEASP------VGGFDTKVTGTNNYAD 66 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcC-------CCeEEEEeCCCChhHHH--HHhhhhhhh------ccCCCcEEEecCCHHH
Confidence 69999999999999999999998 5 899999976541111 001111110 0011235677788876
Q ss_pred HhcCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 141 AVKDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+||+||+++.. ..++++.+++.++. ++.+++..+|..+
T Consensus 67 -~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~d 122 (305)
T TIGR01763 67 -TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLD 122 (305)
T ss_pred -hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 7899999999983 23455566677764 6788888888554
No 115
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.35 E-value=2.1e-06 Score=84.39 Aligned_cols=96 Identities=16% Similarity=0.281 Sum_probs=73.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|+.|...| .+|.+|+|.++. ...... .....+++
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG-------~~V~~~~~~~~~------~~~~~~----------------~~~~~~l~ 185 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWG-------FPLRCWSRSRKS------WPGVQS----------------FAGREELS 185 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCCCC------CCCcee----------------ecccccHH
Confidence 3479999999999999999999989 899999986543 110000 01124677
Q ss_pred HHhcCCCEEEEccCc-chHHHHHH-HHhccCCCCcEEEEeecCcccC
Q 014739 140 NAVKDANMLVFVTPH-QFMEGICK-RLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl~-~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++.+||+|++++|. .+++.++. +....+++++++|.+..|-...
T Consensus 186 e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVd 232 (312)
T PRK15469 186 AFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVV 232 (312)
T ss_pred HHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccC
Confidence 889999999999996 66777764 4667789999999998876654
No 116
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.33 E-value=2.9e-06 Score=81.79 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=64.9
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEE-EEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeE
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVV 133 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~ 133 (419)
.|.++||+|||+|.||..++..|.+. + +++. +|+|++++ .+.+.+. +. ..
T Consensus 3 ~m~~irIGIIG~G~IG~~~a~~L~~~~~~-------~el~aV~dr~~~~------a~~~a~~~g~-------------~~ 56 (271)
T PRK13302 3 SRPELRVAIAGLGAIGKAIAQALDRGLPG-------LTLSAVAVRDPQR------HADFIWGLRR-------------PP 56 (271)
T ss_pred CCCeeEEEEECccHHHHHHHHHHHhcCCC-------eEEEEEECCCHHH------HHHHHHhcCC-------------Cc
Confidence 35678999999999999999999874 4 6765 78887654 3443331 10 12
Q ss_pred ecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 134 ADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
..+++++.+.++|+|++|+|.....++...... .+..++..+
T Consensus 57 ~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~---aGk~Vi~~s 98 (271)
T PRK13302 57 PVVPLDQLATHADIVVEAAPASVLRAIVEPVLA---AGKKAIVLS 98 (271)
T ss_pred ccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHH---cCCcEEEec
Confidence 456788877889999999999888777666543 355444443
No 117
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.31 E-value=1.7e-06 Score=78.16 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=70.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||.|.+|..+|..|..-| .+|..|+|.... .......+ + ...++
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG-------~~V~~~d~~~~~------~~~~~~~~--------------~-~~~~l 85 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFG-------MRVIGYDRSPKP------EEGADEFG--------------V-EYVSL 85 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--------EEEEEESSCHH------HHHHHHTT--------------E-EESSH
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCC-------ceeEEecccCCh------hhhccccc--------------c-eeeeh
Confidence 34478999999999999999999988 899999998753 12123222 2 23578
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++.+..||+|++++|. ...+.++ ++....++++.++|.+..|-...
T Consensus 86 ~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vd 133 (178)
T PF02826_consen 86 DELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVD 133 (178)
T ss_dssp HHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-
T ss_pred hhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhh
Confidence 8888999999999995 4444444 34556678999999998876553
No 118
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=4.5e-06 Score=80.85 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=100.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+...+.|+.||++.||..++.+.++.| +.|.+|+|+..+ ++..-++..+ +. .+....+
T Consensus 3 q~~~~digLiGLaVMGqnLiLN~~d~G-------f~v~~yNRT~sk------vD~flaneak-----~~----~i~ga~S 60 (487)
T KOG2653|consen 3 QTPKADIGLIGLAVMGQNLILNIADKG-------FTVCAYNRTTSK------VDEFLANEAK-----GT----KIIGAYS 60 (487)
T ss_pred CccccchhhhhHhhhhhhhhhcccccC-------ceEEEeccchHh------HHHHHHHhhc-----CC----cccCCCC
Confidence 344578999999999999999999999 999999999877 5555443211 00 1223466
Q ss_pred HHHH---hcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHH
Q 014739 138 LENA---VKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIAN 213 (419)
Q Consensus 138 ~~ea---~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~ 213 (419)
+++. ++....|++.||+ ..+...+++|.|+|.++.+||+--|.-- +++.+...+. .+ .|. ..+-+|-+-.+
T Consensus 61 ~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y--~dT~RR~~el-~k-~Gi-lfvG~GVSGGE 135 (487)
T KOG2653|consen 61 LEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEY--QDTERRCREL-AK-KGI-LFVGSGVSGGE 135 (487)
T ss_pred HHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccC--cchHHHHHHH-Hh-cCc-EEEecCccCcc
Confidence 7664 4568899999998 7788889999999999999998766443 2233332222 11 232 12223332223
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCC
Q 014739 214 EIAVEKFSEATVGYRDNREIAEKWVQLFST 243 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~ 243 (419)
|.++-.|+ +++++ +.+.-..++++|..
T Consensus 136 EGAR~GPS-lMpGg--~~~Awp~ik~ifq~ 162 (487)
T KOG2653|consen 136 EGARYGPS-LMPGG--SKEAWPHIKDIFQK 162 (487)
T ss_pred cccccCCc-cCCCC--ChHHHHHHHHHHHH
Confidence 32222233 34444 56666667776653
No 119
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.26 E-value=4.7e-06 Score=81.55 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=70.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||.|.||..+|+.|..-| .+|.+|+|+... + +.. ....++
T Consensus 120 L~gktvgIiG~G~IG~~vA~~l~afG-------~~V~~~~r~~~~-------~-----~~~-------------~~~~~l 167 (303)
T PRK06436 120 LYNKSLGILGYGGIGRRVALLAKAFG-------MNIYAYTRSYVN-------D-----GIS-------------SIYMEP 167 (303)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEECCCCcc-------c-----Ccc-------------cccCCH
Confidence 34479999999999999999887778 899999986422 0 100 113468
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++.+||+|++++|. .+.+.++ ++....+++++++|.++.|-...
T Consensus 168 ~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd 215 (303)
T PRK06436 168 EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVD 215 (303)
T ss_pred HHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccC
Confidence 8888999999999996 5666665 34556688999999998876543
No 120
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.25 E-value=3.8e-06 Score=80.80 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=59.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||||+|||+|.||..++..+.+.+. ..+ +.+++|++++ .+.+.+.. +....++.+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~-----~~elv~v~d~~~~~------a~~~a~~~-------------~~~~~~~~~ 56 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRI-----NAELYAFYDRNLEK------AENLASKT-------------GAKACLSID 56 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCC-----CeEEEEEECCCHHH------HHHHHHhc-------------CCeeECCHH
Confidence 5899999999999999999987630 044 5678887654 34443311 123557787
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhc
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+.+.++|+|++|+|+....+....+..
T Consensus 57 ell~~~DvVvi~a~~~~~~~~~~~al~ 83 (265)
T PRK13304 57 ELVEDVDLVVECASVNAVEEVVPKSLE 83 (265)
T ss_pred HHhcCCCEEEEcCChHHHHHHHHHHHH
Confidence 777889999999999888887766654
No 121
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.24 E-value=7.8e-06 Score=80.73 Aligned_cols=110 Identities=16% Similarity=0.370 Sum_probs=71.2
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
++..++||+|||+|.||+.+|..++..|+ .+|.++|++++.+.+ +.+...... .-...+.+++.++
T Consensus 2 ~~~~~~KI~IIGaG~vG~~ia~~la~~gl------~~i~LvDi~~~~~~~----~~ld~~~~~----~~~~~~~~I~~~~ 67 (321)
T PTZ00082 2 TMIKRRKISLIGSGNIGGVMAYLIVLKNL------GDVVLFDIVKNIPQG----KALDISHSN----VIAGSNSKVIGTN 67 (321)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCC------CeEEEEeCCCchhhH----HHHHHHhhh----hccCCCeEEEECC
Confidence 34556799999999999999999999883 489999999875211 122111110 0001122466667
Q ss_pred CHHHHhcCCCEEEEccCc---------------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 137 DLENAVKDANMLVFVTPH---------------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~---------------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
|.+ ++.+||+||++.-. ..+.++++++.++. ++.+++..+|..+
T Consensus 68 d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~d 132 (321)
T PTZ00082 68 NYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLD 132 (321)
T ss_pred CHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 875 58999999997721 12455556666654 5667777777543
No 122
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.23 E-value=8.2e-07 Score=81.10 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-------cCcC--CccCCCC--c
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-------TNEN--VKYLPGI--K 127 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-------~g~~--~~~~~~~--~ 127 (419)
..+..|+|||+|.||+.+|+.-+.+| ++|.++++++..++ +..+.|.+ ++.. +....++ .
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg-------~~V~l~d~~~~aL~--~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~ 79 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSG-------LNVWLVDANEDALS--RATKAISSSLKRVAKKKKADDPVALEEFVDD 79 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcC-------CceEEecCCHHHHH--HHHHHHHHHHHHHHhhcccCChhhHHHHHHH
Confidence 34567999999999999999999999 99999999876521 11222222 1110 0000000 0
Q ss_pred cCCCeEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCccc
Q 014739 128 LGKNVVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 128 l~~~i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
.-..++.+++.++++.++|+||-++-. .-.+.++++|....++++++.+-+..+..
T Consensus 80 ~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~l 137 (298)
T KOG2304|consen 80 TLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSL 137 (298)
T ss_pred HHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeH
Confidence 013456678888889999999998875 45667788888888888998887765543
No 123
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.21 E-value=2.1e-06 Score=88.04 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=54.1
Q ss_pred CeEEEECcchHHHHHHH--HH----HHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014739 62 SKVTVVGSGNWGSVASK--LI----ASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~--~L----a~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
+||+|||+|.||.+++. .+ +.+| ++|.+||++++. .+.+..... .+......+.++..+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g-------~eV~L~Did~e~------l~~~~~~~~--~~~~~~~~~~~I~~t 65 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSG-------STIALMDIDEER------LETVEILAK--KIVEELGAPLKIEAT 65 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCC-------CEEEEECCCHHH------HHHHHHHHH--HHHHhcCCCeEEEEe
Confidence 58999999999998766 34 3345 799999999875 233322110 011111223457788
Q ss_pred CCHHHHhcCCCEEEEccCc
Q 014739 136 PDLENAVKDANMLVFVTPH 154 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~ 154 (419)
+|.++++.+||+||++++.
T Consensus 66 tD~~eal~~AD~Vi~ai~~ 84 (423)
T cd05297 66 TDRREALDGADFVINTIQV 84 (423)
T ss_pred CCHHHHhcCCCEEEEeeEe
Confidence 9988889999999999996
No 124
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.19 E-value=1.9e-06 Score=75.61 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=64.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++|+|+|+|.||..++..|.+.|. ++|++|+|+++. .+.+.+.... .. + . ....+.+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~------~~v~v~~r~~~~------~~~~~~~~~~-~~-----~--~-~~~~~~~ 76 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGA------AKIVIVNRTLEK------AKALAERFGE-LG-----I--A-IAYLDLE 76 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC------CEEEEEcCCHHH------HHHHHHHHhh-cc-----c--c-eeecchh
Confidence 35789999999999999999999852 789999998765 3333221100 00 0 0 1234555
Q ss_pred HHhcCCCEEEEccCcchH--HHHHHHHhccCCCCcEEEEeec
Q 014739 140 NAVKDANMLVFVTPHQFM--EGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~--~~vl~~l~~~l~~~tiivs~~n 179 (419)
+++.++|+||.|+|.... +.+... ...++++++++++..
T Consensus 77 ~~~~~~Dvvi~~~~~~~~~~~~~~~~-~~~~~~~~~v~D~~~ 117 (155)
T cd01065 77 ELLAEADLIINTTPVGMKPGDELPLP-PSLLKPGGVVYDVVY 117 (155)
T ss_pred hccccCCEEEeCcCCCCCCCCCCCCC-HHHcCCCCEEEEcCc
Confidence 667899999999998653 222111 123467888988853
No 125
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.16 E-value=1.8e-05 Score=73.69 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=102.8
Q ss_pred cCeEEEECcch--------------------HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCC
Q 014739 61 KSKVTVVGSGN--------------------WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENV 120 (419)
Q Consensus 61 ~mkI~IIGaG~--------------------mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~ 120 (419)
+|||+|.|+|+ -|+.||..++++| |||.+-+.+.+. ..++..+.+...|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAG-------HDVVLaePn~d~-~dd~~w~~vedAG--- 69 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAG-------HDVVLAEPNRDI-MDDEHWKRVEDAG--- 69 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcC-------CcEEeecCCccc-cCHHHHHHHHhcC---
Confidence 58999999997 3778999999999 999999887654 2223344555433
Q ss_pred ccCCCCccCCCeEecCCHHHHhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEE-eecCcccCCCCcccHHHHHHhH
Q 014739 121 KYLPGIKLGKNVVADPDLENAVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAIS-LIKGMEVKREGPCMISTLISEQ 198 (419)
Q Consensus 121 ~~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs-~~nGi~~~~~~~~~~~~~i~~~ 198 (419)
++.++|-.++++++++.++.+|- ...-.+.+.|.++++++.+|.. |+ +++ ..+..-++..
T Consensus 70 -----------V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT--~sp-----~vLy~~LE~~ 131 (340)
T COG4007 70 -----------VEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCT--VSP-----VVLYYSLEGE 131 (340)
T ss_pred -----------cEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEeccccc--Cch-----hHHHHHhhhh
Confidence 56666666788999999999997 4888899999999999988864 33 221 1222222222
Q ss_pred -------hCC-ceEEEeCcchHHHHHhcCceeEEEeec-------CCHHHHHHHHHHhCCCCcEEEEcC
Q 014739 199 -------LGV-SCCVLMGANIANEIAVEKFSEATVGYR-------DNREIAEKWVQLFSTPYFMVTAVQ 252 (419)
Q Consensus 199 -------~g~-~~~v~~gp~~a~e~~~g~~~~~~~~~~-------~~~~~~~~l~~ll~~~g~~~~~~~ 252 (419)
.|. .+..-.-|+..++ + .+++++. ..++.++++.++.++.|..++..+
T Consensus 132 Lr~kR~dVGvssmHPAgvPGtp~h---~---~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 132 LRTKREDVGVSSMHPAGVPGTPQH---G---HYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred hcCchhhcCccccCCCCCCCCCCC---c---eEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecC
Confidence 221 0111111222221 1 1233321 257899999999999998887754
No 126
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.15 E-value=8.3e-06 Score=85.90 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=73.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|..|...| .+|..|++.... +.....+ +...++++
T Consensus 137 ~gktvgIiG~G~IG~~vA~~l~~fG-------~~V~~~d~~~~~-------~~~~~~g--------------~~~~~~l~ 188 (525)
T TIGR01327 137 YGKTLGVIGLGRIGSIVAKRAKAFG-------MKVLAYDPYISP-------ERAEQLG--------------VELVDDLD 188 (525)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEECCCCCh-------hHHHhcC--------------CEEcCCHH
Confidence 3468999999999999999999888 899999985322 2222212 23345788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++..||+|++++|. ...+.++ ++....+++++++|.+..|-...
T Consensus 189 ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd 235 (525)
T TIGR01327 189 ELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIID 235 (525)
T ss_pred HHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeC
Confidence 889999999999996 4666666 34556788999999998876553
No 127
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.14 E-value=1.8e-05 Score=78.16 Aligned_cols=107 Identities=17% Similarity=0.385 Sum_probs=70.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+||+|||+|.||..++..++..|. .++.++|++++...+ +.+...... .. ...+..+..+++.+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~------~~l~L~Di~~~~~~g----~~lDl~~~~-~~---~~~~~~i~~~~d~~ 69 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL------GDVVLYDVIKGVPQG----KALDLKHFS-TL---VGSNINILGTNNYE 69 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC------CeEEEEECCCccchh----HHHHHhhhc-cc---cCCCeEEEeCCCHH
Confidence 45799999999999999999998883 589999998765222 112111100 00 01122455567777
Q ss_pred HHhcCCCEEEEcc--Cc--------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 140 NAVKDANMLVFVT--PH--------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilav--p~--------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.+||+||++. +. ..+.++.+.+.++ .++.+++..+|..+
T Consensus 70 -~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP~d 126 (319)
T PTZ00117 70 -DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNPLD 126 (319)
T ss_pred -HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHH
Confidence 579999999999 32 2255666666665 46777777788543
No 128
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.13 E-value=9.2e-06 Score=85.57 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=73.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|..|...| .+|..|+|.... +.....+ +... +++
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG-------~~V~~~d~~~~~-------~~~~~~g--------------~~~~-~l~ 189 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFG-------MKVIAYDPYISP-------ERAAQLG--------------VELV-SLD 189 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEECCCCCh-------hHHHhcC--------------CEEE-cHH
Confidence 3468999999999999999999988 899999986432 2222212 2233 688
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++.||+|++++|. ...+.++ .+....+++++++|.+..|-...
T Consensus 190 ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vd 236 (526)
T PRK13581 190 ELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIID 236 (526)
T ss_pred HHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeC
Confidence 888999999999996 5677766 45667789999999998876553
No 129
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.10 E-value=7.8e-06 Score=80.59 Aligned_cols=94 Identities=22% Similarity=0.301 Sum_probs=64.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...+|+|||+|.||..++..+.. .+. .+|++|+|++++ .+.+++.+++.+. ++....++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~------~~V~V~~Rs~~~--a~~~a~~~~~~g~------------~~~~~~~~ 183 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPI------KQVRVWGRDPAK--AEALAAELRAQGF------------DAEVVTDL 183 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCC------CEEEEEcCCHHH--HHHHHHHHHhcCC------------ceEEeCCH
Confidence 34689999999999999986654 332 789999999876 3344444433221 24456788
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
++++.++|+|+.|+++. +.++.. ..+++++.|..+
T Consensus 184 ~~av~~aDIVi~aT~s~--~pvl~~--~~l~~g~~i~~i 218 (314)
T PRK06141 184 EAAVRQADIISCATLST--EPLVRG--EWLKPGTHLDLV 218 (314)
T ss_pred HHHHhcCCEEEEeeCCC--CCEecH--HHcCCCCEEEee
Confidence 88889999999999975 333321 356778854433
No 130
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.10 E-value=8.1e-06 Score=79.36 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=65.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
+-++|+|+|+|.||..+|..|...| .+|++++|++++ .+...+.+.. .....++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G-------~~V~v~~R~~~~------~~~~~~~g~~------------~~~~~~l~ 204 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALG-------ARVFVGARSSAD------LARITEMGLI------------PFPLNKLE 204 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHCCCe------------eecHHHHH
Confidence 3468999999999999999999999 899999998654 2333332211 01123456
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+.+.++|+||.++|...+. +.....++++++++++..
T Consensus 205 ~~l~~aDiVint~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 205 EKVAEIDIVINTIPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred HHhccCCEEEECCChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 6778999999999975322 234455678899998864
No 131
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.08 E-value=1.8e-05 Score=77.92 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=67.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..++|+|||+|.||..++..|...|. ++|++++|++++ .+.+.+. |. .+...++.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~------~~V~v~~r~~~r------a~~la~~~g~------------~~~~~~~~ 232 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGV------AEITIANRTYER------AEELAKELGG------------NAVPLDEL 232 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCC------CEEEEEeCCHHH------HHHHHHHcCC------------eEEeHHHH
Confidence 45799999999999999999988663 789999998765 3444332 21 11112345
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccC-CCCcEEEEeecCc
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKV-NGDVEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l-~~~tiivs~~nGi 181 (419)
.+++.++|+||.|+++......+..+.... ..+.+++++...-
T Consensus 233 ~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 233 LELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred HHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 566788999999999866655454443322 3567888887543
No 132
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.04 E-value=1.7e-05 Score=68.82 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=69.6
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+ |.+|+.+|..|...+. ..++.++|+++++ .+..+..++.--. ..+.......+..+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-----~~ei~L~D~~~~~--~~g~a~Dl~~~~~--------~~~~~~~i~~~~~~ 65 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-----ADEIVLIDINEDK--AEGEALDLSHASA--------PLPSPVRITSGDYE 65 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-----SSEEEEEESSHHH--HHHHHHHHHHHHH--------GSTEEEEEEESSGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-----CCceEEeccCccc--ceeeehhhhhhhh--------hccccccccccccc
Confidence 79999999 9999999999999873 2679999998654 1111122221100 00011233334445
Q ss_pred HhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC
Q 014739 141 AVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG 200 (419)
Q Consensus 141 a~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g 200 (419)
++++||+||++.-. . .++++.+.+.++- ++.+++..+|.++ .+..++.+..|
T Consensus 66 ~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd-------~~t~~~~~~s~ 133 (141)
T PF00056_consen 66 ALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVD-------VMTYVAQKYSG 133 (141)
T ss_dssp GGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHH-------HHHHHHHHHHT
T ss_pred ccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHH-------HHHHHHHHhhC
Confidence 68999999999843 1 1333444555543 6778888888553 33455555433
No 133
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.03 E-value=2e-05 Score=77.76 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=73.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-+++||||+|.+|+.+|..+..-| .+|..||+.... +.-... ......++++
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afg-------m~v~~~d~~~~~-------~~~~~~--------------~~~~~~~Ld~ 193 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFG-------MKVIGYDPYSPR-------ERAGVD--------------GVVGVDSLDE 193 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-------CeEEEECCCCch-------hhhccc--------------cceecccHHH
Confidence 468999999999999999999999 899999984432 111111 1234567889
Q ss_pred HhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 141 AVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
.+..||+|.+.+|- ...+.++ .+....++++.++|.+..|-...
T Consensus 194 lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 194 LLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence 99999999999995 6677776 33445678999999998886654
No 134
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.01 E-value=5e-05 Score=64.43 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=74.1
Q ss_pred CeEEEECc-chHHHHHHHHHHHc-CCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 62 SKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|||+|+|+ |.||..++..+.+. + ++ |-.++|+++...++++.+.+. .. +.++.+++++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~-------~~lv~~v~~~~~~~~g~d~g~~~~-----------~~-~~~~~v~~~l 61 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG-------FELVGAVDRKPSAKVGKDVGELAG-----------IG-PLGVPVTDDL 61 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT-------EEEEEEEETTTSTTTTSBCHHHCT-----------SS-T-SSBEBS-H
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-------cEEEEEEecCCcccccchhhhhhC-----------cC-CcccccchhH
Confidence 79999999 99999999999984 4 66 456777763211222222111 11 2345678899
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcc
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGAN 210 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~ 210 (419)
++++..+|+||-++-+..+.+.++....+ +..+|.-++|...+ . .+.+++. .....++..|+
T Consensus 62 ~~~~~~~DVvIDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~-----~-~~~l~~~-a~~~~vl~a~N 123 (124)
T PF01113_consen 62 EELLEEADVVIDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDE-----Q-IDELEEL-AKKIPVLIAPN 123 (124)
T ss_dssp HHHTTH-SEEEEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHH-----H-HHHHHHH-TTTSEEEE-SS
T ss_pred HHhcccCCEEEEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHH-----H-HHHHHHH-hccCCEEEeCC
Confidence 98888899999999777777766665543 77888888888632 1 2344442 33356666665
No 135
>PLN02928 oxidoreductase family protein
Probab=98.00 E-value=3e-05 Score=77.46 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=72.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|+.|..-| .+|+.|+|.... +.....+........ +........+++
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG-------~~V~~~dr~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~L~ 221 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFG-------VKLLATRRSWTS-------EPEDGLLIPNGDVDD--LVDEKGGHEDIY 221 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCC-------CEEEEECCCCCh-------hhhhhhccccccccc--cccccCcccCHH
Confidence 3479999999999999999999888 899999986432 111100000000000 000000234788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++..||+|++++|. ...+.++ ++....++++.++|.+.-|-...
T Consensus 222 ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVd 268 (347)
T PLN02928 222 EFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLD 268 (347)
T ss_pred HHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccC
Confidence 889999999999995 5555555 34556678999999998876553
No 136
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=2e-05 Score=76.45 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=57.3
Q ss_pred cCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+|||.| .||.+||.+|.++| +.|++|++.. .+++
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~g-------atVtv~~~~t----------------------------------~~l~ 197 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAH-------CSVTVVHSRS----------------------------------TDAK 197 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC-------CEEEEECCCC----------------------------------CCHH
Confidence 4689999996 99999999999999 9999997642 1355
Q ss_pred HHhcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.|++.. .+...+ +++|++||+++
T Consensus 198 e~~~~ADIVIsavg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 198 ALCRQADIVVAAVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred HHHhcCCEEEEecCChhcccHhh------ccCCcEEEEec
Confidence 6678899999999974 333332 67899999885
No 137
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.97 E-value=2.5e-05 Score=78.70 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=69.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|||||.|+||..+|..|...| .+|.+|++.... . . + .. ...+++
T Consensus 115 ~gktvGIIG~G~IG~~va~~l~a~G-------~~V~~~Dp~~~~------~----~-~-------------~~-~~~~l~ 162 (381)
T PRK00257 115 AERTYGVVGAGHVGGRLVRVLRGLG-------WKVLVCDPPRQE------A----E-G-------------DG-DFVSLE 162 (381)
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCC-------CEEEEECCcccc------c----c-c-------------Cc-cccCHH
Confidence 3468999999999999999999999 899999874321 0 0 0 01 124688
Q ss_pred HHhcCCCEEEEccCcc-----hHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 140 NAVKDANMLVFVTPHQ-----FMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~~-----~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++.+||+|++++|-. ....++ ++....+++++++|.+..|-...
T Consensus 163 ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVd 213 (381)
T PRK00257 163 RILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213 (381)
T ss_pred HHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccC
Confidence 8888999999999963 355555 34556688999999998876654
No 138
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.96 E-value=6.2e-05 Score=73.94 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=67.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~~e 140 (419)
+||+|||+|.+|.++|..|+..|.. ++|.++|+++++ .+.++..++... .. .+..... ..+.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~-----~ei~l~D~~~~~--~~~~a~dL~~~~----~~----~~~~~~i~~~~~~- 64 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA-----DELVLIDINEEK--AEGEALDLEDAL----AF----LPSPVKIKAGDYS- 64 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEeCCcch--hhHhHhhHHHHh----hc----cCCCeEEEcCCHH-
Confidence 4899999999999999999998831 489999998876 222233332210 00 0011122 34444
Q ss_pred HhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 141 AVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+.+||+||+++... .++++.+.+.++ .++.+++..+|.++
T Consensus 65 ~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP~d 121 (306)
T cd05291 65 DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNPVD 121 (306)
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecChHH
Confidence 478999999999752 144445556554 45778888887543
No 139
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.96 E-value=4.2e-05 Score=74.90 Aligned_cols=102 Identities=19% Similarity=0.364 Sum_probs=66.0
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014739 64 VTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
|+|||+|.||..+|..|+..| . +|.++|++++...++.+ .+.... .......+++.++|.+ ++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~-------l~eV~L~Di~e~~~~g~~~--dl~~~~------~~~~~~~~I~~t~d~~-~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKE-------LGDVVLLDIVEGLPQGKAL--DISQAA------PILGSDTKVTGTNDYE-DI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCC-------CcEEEEEeCCCcHHHHHHH--HHHHhh------hhcCCCeEEEEcCCHH-Hh
Confidence 689999999999999999988 5 99999998765111110 111110 0000112455666765 48
Q ss_pred cCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 143 KDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 143 ~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+||+||+++.. ..++++++++.+.. ++.+++..+|..+
T Consensus 65 ~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~d 119 (300)
T cd01339 65 AGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLD 119 (300)
T ss_pred CCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 999999998732 23556667777765 5667777777443
No 140
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.96 E-value=2.2e-05 Score=78.96 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=70.6
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
...-++|||||.|+||+.+|+.|..-| .+|.+|++.... . ... . ...+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G-------~~V~~~dp~~~~--------~--~~~--------------~-~~~~ 160 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALG-------IKTLLCDPPRAD--------R--GDE--------------G-DFRS 160 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEECCcccc--------c--ccc--------------c-ccCC
Confidence 344579999999999999999999999 899999864221 0 000 0 1246
Q ss_pred HHHHhcCCCEEEEccCcch-----HHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 138 LENAVKDANMLVFVTPHQF-----MEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~-----~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++..||+|++.+|-.. ...++ ++....+++++++|...-|-...
T Consensus 161 L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVD 213 (378)
T PRK15438 161 LDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVD 213 (378)
T ss_pred HHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcC
Confidence 8888889999999999532 44444 44556788999999999886654
No 141
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.93 E-value=4.6e-05 Score=74.48 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=66.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+|++|||+|.+|..++..|...| .+|++++|+++. .+.....|.. .....+..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-------a~V~v~~r~~~~------~~~~~~~G~~------------~~~~~~l~ 205 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-------ANVTVGARKSAH------LARITEMGLS------------PFHLSELA 205 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHHcCCe------------eecHHHHH
Confidence 3479999999999999999999999 899999998654 3333333321 11123456
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+.+.++|+||.++|...+ -++....++++.+|+++..
T Consensus 206 ~~l~~aDiVI~t~p~~~i---~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 206 EEVGKIDIIFNTIPALVL---TKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHhCCCCEEEECCChhhh---hHHHHHcCCCCcEEEEEcc
Confidence 677899999999997432 2334455678999998864
No 142
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.92 E-value=9.1e-05 Score=72.88 Aligned_cols=106 Identities=22% Similarity=0.308 Sum_probs=69.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||+|||+|.+|+.+|..|+..|.. .++.++|++++++.+ .+..+..-. . +. .. ..+..+.++++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~-----~el~LiD~~~~~~~g--~a~Dl~~~~--~-~~---~~-~~v~~~~dy~~ 68 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA-----DELVLVDVVEDKLKG--EAMDLQHGS--A-FL---KN-PKIEADKDYSV 68 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEeCCccHHHH--HHHHHHHhh--c-cC---CC-CEEEECCCHHH
Confidence 46999999999999999999988742 579999998765211 112222110 0 00 01 24666678876
Q ss_pred HhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 141 AVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+||+||++.-. . -++++.+.+.++ .++.+++..+|..+
T Consensus 69 -~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 124 (312)
T cd05293 69 -TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVD 124 (312)
T ss_pred -hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHH
Confidence 8999999996643 1 134444556565 56788888888543
No 143
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.89 E-value=7.5e-05 Score=71.70 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=69.8
Q ss_pred EEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014739 64 VTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 64 I~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
|+|||+ |.||..++..|+..|. ....+|.++|++++++ +.....++..- ... ...++..++|+.+++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~---~~~~el~L~D~~~~~l--~~~~~dl~~~~------~~~-~~~~i~~~~d~~~~~ 68 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSV---LLAIELVLYDIDEEKL--KGVAMDLQDAV------EPL-ADIKVSITDDPYEAF 68 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCC---CcceEEEEEeCCcccc--hHHHHHHHHhh------hhc-cCcEEEECCchHHHh
Confidence 689999 9999999999998872 0115899999988762 21222232210 001 123567778877789
Q ss_pred cCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 143 KDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 143 ~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+||+||++.-. ..++++.+.+.++. ++.+++..+|..+
T Consensus 69 ~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d 123 (263)
T cd00650 69 KDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVD 123 (263)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 999999996632 23555666666654 6778877787543
No 144
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.87 E-value=2.8e-05 Score=66.99 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=61.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
....++.|||+|.+|.+.+..|++.|. .+|++++|+.++ .+++++.+.. .+. .+...++.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~------~~i~i~nRt~~r--a~~l~~~~~~--~~~----------~~~~~~~~ 69 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGA------KEITIVNRTPER--AEALAEEFGG--VNI----------EAIPLEDL 69 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTS------SEEEEEESSHHH--HHHHHHHHTG--CSE----------EEEEGGGH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC------CEEEEEECCHHH--HHHHHHHcCc--ccc----------ceeeHHHH
Confidence 345789999999999999999999993 569999999776 2333333311 000 12234555
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCC-CcEEEEee
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNG-DVEAISLI 178 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~-~tiivs~~ 178 (419)
.+.+.++|+||.|+|.... .+-+...+.... -++++++.
T Consensus 70 ~~~~~~~DivI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 70 EEALQEADIVINATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp CHHHHTESEEEE-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred HHHHhhCCeEEEecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 5667899999999997432 111122221111 14888885
No 145
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.85 E-value=6.1e-05 Score=62.90 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=63.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+||+|||+|.+|......+.+... ..++ .+++++++. .+...+.. ++...+|.++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~-----~~~v~~v~d~~~~~------~~~~~~~~-------------~~~~~~~~~~ 56 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSP-----DFEVVAVCDPDPER------AEAFAEKY-------------GIPVYTDLEE 56 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTT-----TEEEEEEECSSHHH------HHHHHHHT-------------TSEEESSHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC-----CcEEEEEEeCCHHH------HHHHHHHh-------------cccchhHHHH
Confidence 589999999999999988888731 1454 467777654 34443321 2346788888
Q ss_pred Hhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014739 141 AVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 141 a~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
.+. +.|+|++++|+....+.+...... +. -|.+-|.+..
T Consensus 57 ll~~~~~D~V~I~tp~~~h~~~~~~~l~~---g~-~v~~EKP~~~ 97 (120)
T PF01408_consen 57 LLADEDVDAVIIATPPSSHAEIAKKALEA---GK-HVLVEKPLAL 97 (120)
T ss_dssp HHHHTTESEEEEESSGGGHHHHHHHHHHT---TS-EEEEESSSSS
T ss_pred HHHhhcCCEEEEecCCcchHHHHHHHHHc---CC-EEEEEcCCcC
Confidence 776 799999999998777777665542 33 3444554543
No 146
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.85 E-value=8.8e-05 Score=73.37 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=70.4
Q ss_pred CcCeEEEECcchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-+++||||.|.+|..+|+.+. .-| .+|..++|.... +.....+ ++. .++
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fg-------m~V~~~~~~~~~-------~~~~~~~--------------~~~-~~l 194 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFN-------MPILYNARRHHK-------EAEERFN--------------ARY-CDL 194 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCC-------CEEEEECCCCch-------hhHHhcC--------------cEe-cCH
Confidence 4479999999999999999987 456 788888876432 1111111 222 478
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++.||+|++++|- ...+.++ .+....++++.++|.+..|-...
T Consensus 195 ~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVd 242 (323)
T PRK15409 195 DTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVD 242 (323)
T ss_pred HHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccC
Confidence 8889999999999995 5666666 34556788999999998876654
No 147
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.84 E-value=0.00011 Score=72.59 Aligned_cols=97 Identities=10% Similarity=0.150 Sum_probs=71.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-+++||||.|.+|.++|+.+.--| .+|..|+|.+.. +.-+.. +.+... +
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fg-------m~v~y~~~~~~~-------~~~~~~--------------~~~y~~-l 194 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFG-------MKVLYYDRSPNP-------EAEKEL--------------GARYVD-L 194 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCC-------CEEEEECCCCCh-------HHHhhc--------------Cceecc-H
Confidence 33479999999999999999998445 789999987642 111111 122333 8
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++.++.+|+|++.+|. .+.+.++ .+....++++.++|...-|-...
T Consensus 195 ~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VD 242 (324)
T COG1052 195 DELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVD 242 (324)
T ss_pred HHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 8889999999999996 6777776 34556688999999998876654
No 148
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.84 E-value=9.4e-05 Score=75.53 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=72.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|||||.|.+|..+|+.+..-| .+|..|++.+.. . .. .+....+++
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fG-------m~V~~~d~~~~~--------~--~~--------------~~~~~~~l~ 198 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLG-------MRVYFYDIEDKL--------P--LG--------------NARQVGSLE 198 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEECCCccc--------c--cC--------------CceecCCHH
Confidence 3468999999999999999999888 899999975421 0 00 122345788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++.||+|++.+|. ...+.++ ++....+++++++|.+..|-...
T Consensus 199 ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd 245 (409)
T PRK11790 199 ELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVD 245 (409)
T ss_pred HHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccC
Confidence 999999999999996 5676666 44556788999999998876554
No 149
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.83 E-value=0.00015 Score=71.31 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=64.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.+|+++|..|+..|. -++|.++|++++++ +..+..+... .. +.+ +..+. +++.+ .
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~-----~~ev~l~D~~~~~~--~g~a~dl~~~--~~-~~~----~~~i~-~~d~~-~ 64 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGL-----ASEIVLVDINKAKA--EGEAMDLAHG--TP-FVK----PVRIY-AGDYA-D 64 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-----CCEEEEEECCchhh--hhHHHHHHcc--cc-ccC----CeEEe-eCCHH-H
Confidence 699999999999999999999882 15899999987651 1001112221 11 000 11222 45554 5
Q ss_pred hcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecC
Q 014739 142 VKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 142 ~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+++||+||++++.. .++++.+++..+- ++.+++..+|.
T Consensus 65 l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tNP 118 (308)
T cd05292 65 CKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTNP 118 (308)
T ss_pred hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 89999999999862 1444555666643 45666666663
No 150
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.82 E-value=0.00019 Score=70.70 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=64.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+||+|||+|.+|+.+|..|+..|.. .++.++|++++++ +..+..+.... + +.. ...+. +.+.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~-----~el~L~D~~~~~~--~g~~~Dl~~~~--~-~~~----~~~i~-~~~~~ 69 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIA-----DELVIIDINKEKA--EGDAMDLSHAV--P-FTS----PTKIY-AGDYS 69 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEeCCCchh--HHHHHHHHhhc--c-ccC----CeEEE-eCCHH
Confidence 346999999999999999999988831 3799999987651 11122222210 0 000 11222 34454
Q ss_pred HHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCc
Q 014739 140 NAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 140 ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
.+++||+||++.-.. -++++++.+.++ .++.+++..+|..
T Consensus 70 -~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP~ 125 (315)
T PRK00066 70 -DCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPV 125 (315)
T ss_pred -HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCcH
Confidence 489999999976531 134444555554 3577787777744
No 151
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.80 E-value=4.8e-05 Score=77.11 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=69.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++|+|||.|++|.+-|..|...| ++|++--|........+-.+...+.| ... .+.+|
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSG-------vnVvvglr~~~id~~~~s~~kA~~dG--------------F~v-~~~~E 93 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSG-------LDISYALRKEAIAEKRASWRKATENG--------------FKV-GTYEE 93 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCcccc-------ceeEEeccccccccccchHHHHHhcC--------------Ccc-CCHHH
Confidence 378999999999999999999999 88886665531000000012222223 112 45778
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++..||+|++.+|+.....+.+++.+.++++.++.-. -|..
T Consensus 94 a~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fs-HGFn 134 (487)
T PRK05225 94 LIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYS-HGFN 134 (487)
T ss_pred HHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEec-CCce
Confidence 8999999999999987777778999999988876533 3444
No 152
>PRK05442 malate dehydrogenase; Provisional
Probab=97.79 E-value=0.00015 Score=71.78 Aligned_cols=114 Identities=19% Similarity=0.149 Sum_probs=68.5
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC--CCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014739 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET--LPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~--~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.+++||+|||+ |.+|+.+|..|...+........++.++|+++. ++.++ +..+... .. .+..++.++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~--a~Dl~~~--~~------~~~~~~~i~ 71 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGV--VMELDDC--AF------PLLAGVVIT 71 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCccccccee--ehhhhhh--hh------hhcCCcEEe
Confidence 45679999998 999999999999877421111127999998543 21111 1111110 00 000122344
Q ss_pred CCHHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 136 PDLENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+..+.+.+||+||++--.. .++++.+.|.++.+++.+++..+|.++
T Consensus 72 ~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 134 (326)
T PRK05442 72 DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN 134 (326)
T ss_pred cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence 44445689999999876431 144555666666556888888888654
No 153
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.77 E-value=2.8e-05 Score=71.25 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=74.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCC--CcchH---HHHHHhcCcCCccCC-CCccCCCeEe
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLP--SGEKL---TDVINRTNENVKYLP-GIKLGKNVVA 134 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~--~~~~l---~~~i~~~g~~~~~~~-~~~l~~~i~~ 134 (419)
.-||+|+|.|.+|+.+|..|+..| ++|.+||..++.. ..+.+ .+.+.+.|.....+. +..+ .-|..
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~G-------yqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eql-a~is~ 74 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSG-------YQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQL-ALISG 74 (313)
T ss_pred ccceeEeecccccchHHHHHhccC-------ceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHH-HHHhC
Confidence 458999999999999999999999 9999999987541 01111 122223332100000 0011 12446
Q ss_pred cCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 135 DPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++++.|++++|=.|--|+|. +-...+.++|...+.+.+|+-|.+..+.
T Consensus 75 t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~m 124 (313)
T KOG2305|consen 75 TTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFM 124 (313)
T ss_pred CccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccC
Confidence 78899999999999999998 4455666777776766666666555443
No 154
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.75 E-value=0.00019 Score=70.86 Aligned_cols=112 Identities=20% Similarity=0.168 Sum_probs=67.4
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC--CCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL--PSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~--~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.+||+|||+ |.+|+.+|..|+..|...+....++.++|+.+.. +.++. -.+.. ... .+..++.++++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a--~Dl~~--~~~------~~~~~~~i~~~ 71 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVA--MELED--CAF------PLLAEIVITDD 71 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceee--hhhhh--ccc------cccCceEEecC
Confidence 469999999 9999999999998885322222379999985432 11111 11111 000 00112333334
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+.+.+||+||++--.. .++++.+.|.++-+++.+++..+|.++
T Consensus 72 ~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (322)
T cd01338 72 PNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN 132 (322)
T ss_pred cHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH
Confidence 345589999999986431 144455556665445778888888554
No 155
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.74 E-value=0.0024 Score=63.60 Aligned_cols=230 Identities=13% Similarity=0.107 Sum_probs=135.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCc--cC-CCC-ccCCCe---E
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVK--YL-PGI-KLGKNV---V 133 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~--~~-~~~-~l~~~i---~ 133 (419)
|.+|.|+|+|..+--+|..|.+.+. +.|-+.+|+..+ .+.+.+++++.+.... .- +.. .+.... .
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~------~~vGi~~R~S~r--Sq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~ 72 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGN------CRVGIVGRESVR--SQRFFEALARSDGLFEVSVQNEQHQALSGECTIDH 72 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccC------ceeeeecCcchh--HHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhH
Confidence 5689999999999999999998872 689999997655 5666777776321110 00 000 011111 1
Q ss_pred ecCCHHHHhcCCCEEEEccCcchHHHHHHHHhc-cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEE-----e
Q 014739 134 ADPDLENAVKDANMLVFVTPHQFMEGICKRLVG-KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVL-----M 207 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~-~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~-----~ 207 (419)
...+.++...+.|.+|+|||+++-.+|+++|.+ .|+.=..+|-++..++. ...+..++.+ .+.+..++ .
T Consensus 73 ~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS----~~lv~~~l~~-~~~~~EVISFStY~ 147 (429)
T PF10100_consen 73 VFQDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGS----HLLVKGFLND-LGPDAEVISFSTYY 147 (429)
T ss_pred hhcCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccch----HHHHHHHHHh-cCCCceEEEeeccc
Confidence 345677777789999999999999999988754 33333344444444542 1233334433 23222111 1
Q ss_pred Ccc------hHH-HHHhcCceeEEEeec-CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHH--------HHHHHHHHHHH
Q 014739 208 GAN------IAN-EIAVEKFSEATVGYR-DNREIAEKWVQLFSTPYFMVTAVQDVEGVELC--------GTLKNVVAIAA 271 (419)
Q Consensus 208 gp~------~a~-e~~~g~~~~~~~~~~-~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~--------~al~Ni~a~~~ 271 (419)
|.. ... .+..+....+-+|+. .+...+.+++.+|+..|+.+...+....+|-- .++.|=+++..
T Consensus 148 gdTr~~d~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~a 227 (429)
T PF10100_consen 148 GDTRWSDGEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNA 227 (429)
T ss_pred ccceeccCCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHH
Confidence 111 010 111122223455554 35678899999999999999999888777742 22334333221
Q ss_pred Hhh--hcC----CC---C--ccHHHHHHHHHHHHHHHHHHHhc
Q 014739 272 GFV--DGL----EM---G--NNTKAAIMRIGLREMRAFSKLLF 303 (419)
Q Consensus 272 g~~--~~~----~~---~--~n~~~~l~~~~~~E~~~la~a~g 303 (419)
-.. ..- |+ | ......-|...-.|+.++.++++
T Consensus 228 IF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~ 270 (429)
T PF10100_consen 228 IFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLG 270 (429)
T ss_pred HhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 111 111 11 1 12334557778899999999996
No 156
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.73 E-value=0.00029 Score=59.34 Aligned_cols=98 Identities=19% Similarity=0.392 Sum_probs=62.1
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCHH
Q 014739 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDLE 139 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~~ 139 (419)
||+||| +|.+|..+...|++.- +.++ .+.+++++. ++. +........ +. ..+... .+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp------~~e~~~~~~~~~~~--g~~----~~~~~~~~~---~~---~~~~~~~~~~~ 62 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP------DFELVALVSSSRSA--GKP----LSEVFPHPK---GF---EDLSVEDADPE 62 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS------TEEEEEEEESTTTT--TSB----HHHTTGGGT---TT---EEEBEEETSGH
T ss_pred CEEEECCCCHHHHHHHHHHhcCC------CccEEEeeeecccc--CCe----eehhccccc---cc---cceeEeecchh
Confidence 799999 9999999999999864 1454 455555522 222 222110000 00 012222 2444
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+.++|+||+|+|+....+....+. ..+..||+++.-.-
T Consensus 63 -~~~~~Dvvf~a~~~~~~~~~~~~~~---~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 63 -ELSDVDVVFLALPHGASKELAPKLL---KAGIKVIDLSGDFR 101 (121)
T ss_dssp -HHTTESEEEE-SCHHHHHHHHHHHH---HTTSEEEESSSTTT
T ss_pred -HhhcCCEEEecCchhHHHHHHHHHh---hCCcEEEeCCHHHh
Confidence 4689999999999998888887774 46889999986553
No 157
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.73 E-value=0.00011 Score=72.37 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=70.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||.|.+|..+|..+..-| .+|..|+|.... + ..+ +. ..++
T Consensus 143 L~gktvGIiG~G~IG~~vA~~~~~fg-------m~V~~~d~~~~~-------~---~~~--------------~~-~~~l 190 (311)
T PRK08410 143 IKGKKWGIIGLGTIGKRVAKIAQAFG-------AKVVYYSTSGKN-------K---NEE--------------YE-RVSL 190 (311)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhcC-------CEEEEECCCccc-------c---ccC--------------ce-eecH
Confidence 34578999999999999999998777 789999885321 0 001 11 2468
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++.||+|++++|- ...+.++ ++....++++.++|.+.-|-...
T Consensus 191 ~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVD 238 (311)
T PRK08410 191 EELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVN 238 (311)
T ss_pred HHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccC
Confidence 8889999999999995 5666666 34556678999999998876654
No 158
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.72 E-value=0.00012 Score=61.71 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=62.2
Q ss_pred eEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEE-ecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCH
Q 014739 63 KVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMW-VFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDL 138 (419)
Q Consensus 63 kI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~-~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~ 138 (419)
||+|+|+ |.+|..++..|.+. + +++..+ +++++. + +.+...+.... ..... ... .+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~-------~~l~av~~~~~~~--~----~~~~~~~~~~~---~~~~~---~~~~~~~ 61 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD-------FEVVALAASARSA--G----KRVSEAGPHLK---GEVVL---ELEPEDF 61 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC-------ceEEEEEechhhc--C----cCHHHHCcccc---ccccc---ccccCCh
Confidence 6999995 99999999999885 4 666655 544332 1 12222111110 00000 011 222
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+ ..++|+||+|+|+....+++..+.+.+.+|+++|++++-+.
T Consensus 62 ~--~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 62 E--ELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred h--hcCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCcccc
Confidence 2 24799999999998888877766666778999999986443
No 159
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=0.0001 Score=71.68 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=56.7
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEe-cCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWV-FEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~-r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
..-++|+||| .|.||.+||.+|.++| +.|++|+ |++
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g-------~tVtv~~~rT~----------------------------------- 193 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAAN-------ATVTIAHSRTR----------------------------------- 193 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCC-------CEEEEECCCCC-----------------------------------
Confidence 3446899999 9999999999999999 9999995 432
Q ss_pred CHHHHhcCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEEee
Q 014739 137 DLENAVKDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++++++.||+||.|++... +++. ++++|++||++.
T Consensus 194 ~l~e~~~~ADIVIsavg~~~~v~~~------~lk~GavVIDvG 230 (296)
T PRK14188 194 DLPAVCRRADILVAAVGRPEMVKGD------WIKPGATVIDVG 230 (296)
T ss_pred CHHHHHhcCCEEEEecCChhhcchh------eecCCCEEEEcC
Confidence 23456678999999999744 3332 277899999874
No 160
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.70 E-value=9.7e-05 Score=73.19 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=64.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+++|||+|.+|...+..|.... . -.+|.+|+|++++ .+.+++.+++.+ ..+....+++
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~-~----~~~v~V~~r~~~~--~~~~~~~~~~~g------------~~v~~~~~~~ 187 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVF-D----LEEVSVYCRTPST--REKFALRASDYE------------VPVRAATDPR 187 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC-C----CCEEEEECCCHHH--HHHHHHHHHhhC------------CcEEEeCCHH
Confidence 3468999999999999777765432 0 1789999999876 333334443222 1245678899
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++++++|+|++|||+.. .++. ..++++|+.|..+.
T Consensus 188 eav~~aDiVitaT~s~~--P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 188 EAVEGCDILVTTTPSRK--PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred HHhccCCEEEEecCCCC--cEec--HHHcCCCCEEEecC
Confidence 99999999999999743 2221 23457787776553
No 161
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.69 E-value=0.00014 Score=71.81 Aligned_cols=91 Identities=13% Similarity=0.152 Sum_probs=69.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.+|..+|+.+..-| .+|..|+|.... +. .. ..+++
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fg-------m~V~~~~~~~~~-------~~-------------------~~-~~~l~ 192 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFG-------MRVLIGQLPGRP-------AR-------------------PD-RLPLD 192 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCC-------CEEEEECCCCCc-------cc-------------------cc-ccCHH
Confidence 3468999999999999999998777 789989875321 00 00 13678
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++.||+|++++|- ...+.++ ++....++++.++|.+.-|-...
T Consensus 193 ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVd 239 (317)
T PRK06487 193 ELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVD 239 (317)
T ss_pred HHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccC
Confidence 889999999999995 5666666 34556678999999998876554
No 162
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.69 E-value=0.0001 Score=69.12 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=65.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh--cCcCCccCCCCccCCCeEe-cCC-
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR--TNENVKYLPGIKLGKNVVA-DPD- 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~--~g~~~~~~~~~~l~~~i~~-~~~- 137 (419)
|+|.|+|+|.+|..+|..|.+.| |+|.+++++++. ++.... ...+ .+.. .++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-------~~Vv~Id~d~~~------~~~~~~~~~~~~-----------~v~gd~t~~ 56 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-------HNVVLIDRDEER------VEEFLADELDTH-----------VVIGDATDE 56 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-------CceEEEEcCHHH------HHHHhhhhcceE-----------EEEecCCCH
Confidence 78999999999999999999999 999999999865 444222 1110 0111 122
Q ss_pred --HHHH-hcCCCEEEEccCcchHHHHHHHHhcc-CCCCcEEEEeec
Q 014739 138 --LENA-VKDANMLVFVTPHQFMEGICKRLVGK-VNGDVEAISLIK 179 (419)
Q Consensus 138 --~~ea-~~~aDlVilavp~~~~~~vl~~l~~~-l~~~tiivs~~n 179 (419)
++++ +.++|+++.++....+..++-.+... +....++.-..+
T Consensus 57 ~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 57 DVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred HHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 2333 56899999999998888888777643 444455555443
No 163
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.69 E-value=0.0002 Score=68.52 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=72.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||+|||.|+=|.+=|.+|.++| .+|++--|.... + .+.-.+.| .++ -+.+|
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSG-------lnViiGlr~g~~-s----~~kA~~dG--------------f~V-~~v~e 70 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSG-------LNVIIGLRKGSS-S----WKKAKEDG--------------FKV-YTVEE 70 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcC-------CcEEEEecCCch-h----HHHHHhcC--------------CEe-ecHHH
Confidence 358999999999999999999999 788877765443 0 22233333 222 45778
Q ss_pred HhcCCCEEEEccCcchHHHHHH-HHhccCCCCcEEEEeecCccc
Q 014739 141 AVKDANMLVFVTPHQFMEGICK-RLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~-~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++.+|+|++-+|+....++.+ .|.|.|+++..+. .+-|+.+
T Consensus 71 a~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~G~aL~-FaHGfNi 113 (338)
T COG0059 71 AAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALG-FAHGFNI 113 (338)
T ss_pred HhhcCCEEEEeCchhhHHHHHHHHhhhhhcCCceEE-eccccce
Confidence 8999999999999999999997 8999999888554 4446654
No 164
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.69 E-value=0.00014 Score=71.41 Aligned_cols=93 Identities=9% Similarity=0.040 Sum_probs=64.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...+++|||+|.+|...+..+.. .+. .+|.+|+|++++ .+.+++.+.+.+. .+. ..+.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~------~~v~v~~r~~~~--a~~~a~~~~~~~~------------~~~-~~~~ 182 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPV------RRVWVRGRTAAS--AAAFCAHARALGP------------TAE-PLDG 182 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC------CEEEEEcCCHHH--HHHHHHHHHhcCC------------eeE-ECCH
Confidence 34689999999999999999975 342 579999999876 3334444432110 122 4677
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++++.++|+||.|||+.. .++. ..+++|+.|..+.
T Consensus 183 ~~av~~aDiVitaT~s~~--Pl~~---~~~~~g~hi~~iG 217 (304)
T PRK07340 183 EAIPEAVDLVVTATTSRT--PVYP---EAARAGRLVVAVG 217 (304)
T ss_pred HHHhhcCCEEEEccCCCC--ceeC---ccCCCCCEEEecC
Confidence 778899999999999854 2332 2357888776653
No 165
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.68 E-value=0.00035 Score=68.69 Aligned_cols=104 Identities=15% Similarity=0.321 Sum_probs=64.8
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC--CCCCcc--hHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE--TLPSGE--KLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~--~~~~~~--~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|||+|+|+ |.+|..++..|+..|+. .+|.+++|++ +++.++ ++.+.+...+ ....+..++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~-----~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~----------~~~~i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV-----KEINLISRPKSLEKLKGLRLDIYDALAAAG----------IDAEIKISS 65 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-----CEEEEEECcccccccccccchhhhchhccC----------CCcEEEECC
Confidence 79999998 99999999999999831 3699999954 221111 1111111100 011345556
Q ss_pred CHHHHhcCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 137 DLENAVKDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+ .+.++|+||+|+.. ..++++.+.+.+.. ++.+++..+|.++
T Consensus 66 d~~-~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd 125 (309)
T cd05294 66 DLS-DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD 125 (309)
T ss_pred CHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence 665 48999999999963 12444555566554 5667777777554
No 166
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.67 E-value=0.00016 Score=71.73 Aligned_cols=93 Identities=13% Similarity=0.220 Sum_probs=65.2
Q ss_pred cCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+++|||+|.+|...+..++. .+. .+|.+|+|++++ .+++.+.++... +..+....+.+
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~------~~v~v~~r~~~~--a~~~~~~~~~~~-----------~~~~~~~~~~~ 187 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDI------ERVRVYSRTFEK--AYAFAQEIQSKF-----------NTEIYVVNSAD 187 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCc------cEEEEECCCHHH--HHHHHHHHHHhc-----------CCcEEEeCCHH
Confidence 4689999999999988877754 342 689999999876 344444443211 01234567788
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++.++|+|+.|||+.. .++. ..+++|+.|+.+
T Consensus 188 ~~~~~aDiVi~aT~s~~--p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 188 EAIEEADIIVTVTNAKT--PVFS---EKLKKGVHINAV 220 (325)
T ss_pred HHHhcCCEEEEccCCCC--cchH---HhcCCCcEEEec
Confidence 88899999999999863 3332 456788887665
No 167
>PRK15076 alpha-galactosidase; Provisional
Probab=97.67 E-value=5.9e-05 Score=77.44 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=51.0
Q ss_pred cCeEEEECcchHHHHHHH--HHHHcCCCCCCCC-ceEEEEecCCCCCC-cchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 61 KSKVTVVGSGNWGSVASK--LIASNTLRLSSFH-DEVRMWVFEETLPS-GEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~--~La~~G~~~~~~~-~~V~l~~r~~~~~~-~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|+||+|||+|.||.+.+. .++... .+. .+|.++|+++++.+ .+.+++..... ...+.++..++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~----~l~~~evvLvDid~er~~~~~~l~~~~~~~---------~~~~~~i~~tt 67 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVP----ALRDAEIALMDIDPERLEESEIVARKLAES---------LGASAKITATT 67 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCc----cCCCCEEEEECCCHHHHHHHHHHHHHHHHh---------cCCCeEEEEEC
Confidence 579999999999977666 554211 011 58999999876511 11111111110 01123467788
Q ss_pred CHHHHhcCCCEEEEccCc
Q 014739 137 DLENAVKDANMLVFVTPH 154 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~ 154 (419)
|..+++.+||+||+++-.
T Consensus 68 D~~eal~dADfVv~ti~v 85 (431)
T PRK15076 68 DRREALQGADYVINAIQV 85 (431)
T ss_pred CHHHHhCCCCEEeEeeee
Confidence 977889999999999865
No 168
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.66 E-value=0.00029 Score=69.02 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=65.7
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhc
Q 014739 64 VTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVK 143 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~ 143 (419)
|+|||+|.+|+.+|..|+..|.. +++.++|++++++ +..+..+...- .... ...+..+++.+ .+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~-----~el~l~D~~~~~~--~g~~~DL~~~~------~~~~-~~~i~~~~~~~-~l~ 65 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA-----SELVLVDVNEEKA--KGDALDLSHAS------AFLA-TGTIVRGGDYA-DAA 65 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC-----CEEEEEeCCccHH--HHHHHhHHHhc------cccC-CCeEEECCCHH-HhC
Confidence 68999999999999999988731 5799999987761 11111222110 0000 11344455554 589
Q ss_pred CCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 144 DANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 144 ~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+||+||++.... -++++.+.+.++. ++.+++..+|..+
T Consensus 66 ~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d 119 (300)
T cd00300 66 DADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVD 119 (300)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHH
Confidence 999999998742 1444555566654 6778888887443
No 169
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00014 Score=73.05 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=61.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcC-cCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTN-ENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g-~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||||.|||+|.+|++.|..|+++|. .+|++-+|+.++ ++++.... ...+. ..+ .+.-...+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d------~~V~iAdRs~~~------~~~i~~~~~~~v~~---~~v--D~~d~~al~ 63 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD------GEVTIADRSKEK------CARIAELIGGKVEA---LQV--DAADVDALV 63 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC------ceEEEEeCCHHH------HHHHHhhcccccee---EEe--cccChHHHH
Confidence 6899999999999999999999983 799999999876 55664432 11110 000 011112344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHH
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRL 164 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l 164 (419)
+++++.|+||-|.|.+....+++..
T Consensus 64 ~li~~~d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 64 ALIKDFDLVINAAPPFVDLTILKAC 88 (389)
T ss_pred HHHhcCCEEEEeCCchhhHHHHHHH
Confidence 6788999999999998777776543
No 170
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.65 E-value=0.00017 Score=71.14 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=69.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.+|..+|+.+..-| .+|..|+|.... .... ...+++
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg-------~~V~~~~~~~~~--------~~~~------------------~~~~l~ 192 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALG-------MKVLYAEHKGAS--------VCRE------------------GYTPFE 192 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCC-------CEEEEECCCccc--------cccc------------------ccCCHH
Confidence 3469999999999999999998777 788888764321 1100 124678
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++..||+|++++|- ...+.++ ++....++++.++|.+.-|-...
T Consensus 193 ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vd 239 (314)
T PRK06932 193 EVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVD 239 (314)
T ss_pred HHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccC
Confidence 889999999999995 5666666 34556678999999998876654
No 171
>PLN02602 lactate dehydrogenase
Probab=97.64 E-value=0.00058 Score=68.21 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=66.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+||+|||+|.+|+.+|..|+..+.. .++.++|++++++.++ +..+... .. .++ ...+....+.++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~-----~el~LiDi~~~~~~g~--a~DL~~~--~~-~~~----~~~i~~~~dy~~- 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA-----DELALVDVNPDKLRGE--MLDLQHA--AA-FLP----RTKILASTDYAV- 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC-----CEEEEEeCCCchhhHH--HHHHHhh--hh-cCC----CCEEEeCCCHHH-
Confidence 6999999999999999999988731 5799999987652111 1122210 00 000 013444456765
Q ss_pred hcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 142 VKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++||+||++.-.. -++++.+.+..+ .++.+++..+|..+
T Consensus 103 ~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPvd 158 (350)
T PLN02602 103 TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPVD 158 (350)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCchH
Confidence 79999999985321 133444555554 46788888888553
No 172
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.64 E-value=0.00032 Score=67.16 Aligned_cols=94 Identities=17% Similarity=0.065 Sum_probs=62.7
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
||||+|+|+ |.||..++..+.+... .++ .+++++++. .+.... .++..++++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~------~elvav~d~~~~~------~~~~~~--------------~~i~~~~dl 54 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED------LELVAAVDRPGSP------LVGQGA--------------LGVAITDDL 54 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecCCcc------ccccCC--------------CCccccCCH
Confidence 589999998 9999999988876531 554 457777654 111110 123456788
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++.++|+||.++++....+.+..... .+.-+|.-+.|+..
T Consensus 55 ~~ll~~~DvVid~t~p~~~~~~~~~al~---~G~~vvigttG~s~ 96 (257)
T PRK00048 55 EAVLADADVLIDFTTPEATLENLEFALE---HGKPLVIGTTGFTE 96 (257)
T ss_pred HHhccCCCEEEECCCHHHHHHHHHHHHH---cCCCEEEECCCCCH
Confidence 8777789999988888777776655543 35555555667653
No 173
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.63 E-value=0.00034 Score=69.13 Aligned_cols=113 Identities=21% Similarity=0.175 Sum_probs=68.5
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC--CCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE--TLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~--~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+..||+|||+ |.+|+.+|..|...+....+...++.++|+.+ +++.++ +..+.. ...... .+.+++.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~--a~Dl~~--~~~~~~------~~~~i~~ 71 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGV--AMELED--CAFPLL------AGVVATT 71 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchH--HHHHhh--cccccc------CCcEEec
Confidence 3579999998 99999999999988843222223799999865 221111 112221 110000 1223333
Q ss_pred CHHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 137 DLENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+..+.+++||+||++--.. .++++.+++.++-+++.+++..+|.++
T Consensus 72 ~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 133 (323)
T TIGR01759 72 DPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN 133 (323)
T ss_pred ChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 4334589999999986431 145555666666544888888888654
No 174
>PLN02306 hydroxypyruvate reductase
Probab=97.62 E-value=0.00034 Score=70.77 Aligned_cols=112 Identities=11% Similarity=0.173 Sum_probs=71.9
Q ss_pred CcCeEEEECcchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-++|+|||.|.+|..+|+.|. .-| .+|..|++.... +........+......... +..++...++
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fG-------m~V~~~d~~~~~----~~~~~~~~~~~~l~~~~~~--~~~~~~~~~L 230 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQST----RLEKFVTAYGQFLKANGEQ--PVTWKRASSM 230 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-------CEEEEECCCCch----hhhhhhhhhcccccccccc--cccccccCCH
Confidence 3478999999999999999986 446 789999986532 0000011111000000000 0012223578
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++.||+|++++|- ...+.++ ++....++++.++|.+.-|-...
T Consensus 231 ~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVD 278 (386)
T PLN02306 231 EEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVID 278 (386)
T ss_pred HHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 8999999999999995 5666666 34556688999999998775543
No 175
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.56 E-value=0.00057 Score=65.74 Aligned_cols=93 Identities=17% Similarity=0.273 Sum_probs=58.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEE-EecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRM-WVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l-~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||||+|||+|.||..++..+.+... .++.. ++++... +...+.- ...+..+++.+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~------~~l~~v~~~~~~~-------~~~~~~~-----------~~~~~~~~d~~ 56 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPD------LRVDWVIVPEHSI-------DAVRRAL-----------GEAVRVVSSVD 56 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCC------ceEEEEEEcCCCH-------HHHhhhh-----------ccCCeeeCCHH
Confidence 5899999999999999999987631 45543 3343221 2211100 00234667777
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+...+.|+|+.|+++....+....... .+.-++..+.|
T Consensus 57 ~l~~~~DvVve~t~~~~~~e~~~~aL~---aGk~Vvi~s~~ 94 (265)
T PRK13303 57 ALPQRPDLVVECAGHAALKEHVVPILK---AGIDCAVISVG 94 (265)
T ss_pred HhccCCCEEEECCCHHHHHHHHHHHHH---cCCCEEEeChH
Confidence 653468999999999877666655543 45555555544
No 176
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.54 E-value=0.00061 Score=66.95 Aligned_cols=97 Identities=12% Similarity=0.174 Sum_probs=71.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|+|+|.+|..+|++|..-| ..+....|++.. .+...+.+ .+ ..|.+
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg-------~~i~y~~r~~~~------~~~~~~~~--------------~~-~~d~~ 212 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFG-------CVILYHSRTQLP------PEEAYEYY--------------AE-FVDIE 212 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhcc-------ceeeeecccCCc------hhhHHHhc--------------cc-ccCHH
Confidence 3468999999999999999998876 566667776654 22222211 01 23566
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014739 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+.+..+|+|++|.|- .+++.++ +++..+++++.++|...-|-...
T Consensus 213 ~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iid 259 (336)
T KOG0069|consen 213 ELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIID 259 (336)
T ss_pred HHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccccccc
Confidence 778899999999996 7788888 45677889999999998776554
No 177
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=97.54 E-value=0.00018 Score=60.67 Aligned_cols=107 Identities=15% Similarity=0.079 Sum_probs=69.4
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccC-cccH-HHHH-HhhhccCCCCHHHHHHHHh
Q 014739 277 LEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLG-GRNR-KVAE-AFAKNEGKRSFDDLEAEML 353 (419)
Q Consensus 277 ~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~-~rn~-~~g~-~l~~~g~~~~~~~~~~~~~ 353 (419)
+|+.+|........++.|+..++++. |++++++++.. ..... +... .... .+.+ +. +.+.+
T Consensus 6 ~Kl~~N~l~~~~~~~~aEa~~la~~~--Gld~~~~~~vl------~~~~~~s~~~~~~~~~~~~~-~~-~~~~f------ 69 (122)
T PF14833_consen 6 MKLANNLLIAANMAALAEALALAEKA--GLDPEQLLDVL------SAGSGGSWMLKNRAPRMILN-GD-FDPGF------ 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--TS-HHHHHHHH------HTSTTHBHHHHHHHHHHHHT-TT-TCSSS------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHH------ccCCcCchHHHhhhhhhhhc-cc-CCccc------
Confidence 34456677778899999999999999 58999988742 11111 1111 1232 2333 21 22211
Q ss_pred cCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHH
Q 014739 354 QGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYS 403 (419)
Q Consensus 354 ~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~ 403 (419)
......||++.+.++|++.|+ ++|+.+.+.+.+ .++.|...+++++
T Consensus 70 --~l~~~~KDl~l~~~~a~~~g~--~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 70 --SLDLARKDLRLALDLAKEAGV--PLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp --BHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred --hhHhhccHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 233458899999999999999 999999999988 4677888887764
No 178
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.53 E-value=0.00025 Score=70.59 Aligned_cols=97 Identities=15% Similarity=0.248 Sum_probs=65.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+++|||+|..+..-...+..-- .. .+|++|+|++++ .+.+++.+++.+ .++...++++
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr-~i----~~V~v~~r~~~~--a~~~~~~~~~~~------------~~v~~~~~~~ 188 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL-GI----EEIRLYDIDPAA--TAKLARNLAGPG------------LRIVACRSVA 188 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC-Cc----eEEEEEeCCHHH--HHHHHHHHHhcC------------CcEEEeCCHH
Confidence 3467999999999988877665532 01 689999999876 334444444321 1355678899
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++.+||+|+.||++..-..+++. .++++|+.|..+
T Consensus 189 ~av~~ADIIvtaT~S~~~~Pvl~~--~~lkpG~hV~aI 224 (346)
T PRK07589 189 EAVEGADIITTVTADKTNATILTD--DMVEPGMHINAV 224 (346)
T ss_pred HHHhcCCEEEEecCCCCCCceecH--HHcCCCcEEEec
Confidence 999999999999987543333321 356778866544
No 179
>PLN00203 glutamyl-tRNA reductase
Probab=97.53 E-value=0.00036 Score=73.12 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=66.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
....+|+|||+|.||..++..|...|. .+|++++|+.++ ++.+.+.. ++..+ .+....+.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~------~~V~V~nRs~er------a~~La~~~------~g~~i--~~~~~~dl 323 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC------TKMVVVNRSEER------VAALREEF------PDVEI--IYKPLDEM 323 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC------CeEEEEeCCHHH------HHHHHHHh------CCCce--EeecHhhH
Confidence 345789999999999999999999983 479999999766 45554421 00000 01123455
Q ss_pred HHHhcCCCEEEEccCcc---hHHHHHHHHhccC---CCCcEEEEeec
Q 014739 139 ENAVKDANMLVFVTPHQ---FMEGICKRLVGKV---NGDVEAISLIK 179 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~---~~~~vl~~l~~~l---~~~tiivs~~n 179 (419)
.+++.++|+||.||++. ...+.++.+.+.- ....++|++.-
T Consensus 324 ~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 324 LACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred HHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 66788999999999762 3455555553211 11247788763
No 180
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.52 E-value=0.00024 Score=72.98 Aligned_cols=97 Identities=16% Similarity=0.277 Sum_probs=62.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~ 137 (419)
...++|+|||+|.||..++..|...|. .+|++++|++++ .+.+.+. |. .+....+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~------~~V~v~~r~~~r------a~~la~~~g~------------~~~~~~~ 235 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV------RKITVANRTLER------AEELAEEFGG------------EAIPLDE 235 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC------CeEEEEeCCHHH------HHHHHHHcCC------------cEeeHHH
Confidence 344789999999999999999998882 389999998765 3434332 11 1112234
Q ss_pred HHHHhcCCCEEEEccCcch---HHHHHHHHh-ccCCCCcEEEEeec
Q 014739 138 LENAVKDANMLVFVTPHQF---MEGICKRLV-GKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~---~~~vl~~l~-~~l~~~tiivs~~n 179 (419)
..+++.++|+||.||++.. ..+.++... ..-..+.+++++..
T Consensus 236 ~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 236 LPEALAEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred HHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 5566789999999998632 223333321 11123567888864
No 181
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.51 E-value=0.0018 Score=64.58 Aligned_cols=101 Identities=20% Similarity=0.338 Sum_probs=62.0
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|+||+|||+ |.+|..++..|.+... +++..+.++.+. . +.+.+...+ +.+. ..... .+.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~------~elv~v~~~~~~--g----~~l~~~~~~---~~~~---~~~~~-~~~~ 62 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE------VEIVAVTSRSSA--G----KPLSDVHPH---LRGL---VDLVL-EPLD 62 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC------ceEEEEECcccc--C----cchHHhCcc---cccc---cCcee-ecCC
Confidence 579999997 9999999999987631 676555443322 1 222211100 0000 00111 1111
Q ss_pred -HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014739 140 -NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 -ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
....++|+||+|+|.....++...+.. .|..||++++..-.
T Consensus 63 ~~~~~~vD~Vf~alP~~~~~~~v~~a~~---aG~~VID~S~~fR~ 104 (343)
T PRK00436 63 PEILAGADVVFLALPHGVSMDLAPQLLE---AGVKVIDLSADFRL 104 (343)
T ss_pred HHHhcCCCEEEECCCcHHHHHHHHHHHh---CCCEEEECCcccCC
Confidence 134679999999999888777766644 58899999876644
No 182
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.50 E-value=0.00081 Score=65.65 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=64.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC--CHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP--DLE 139 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~--~~~ 139 (419)
|||+|||+|.+|+++|..|...+. ..++.++|+.++.+.++ +..+.... .......+... +.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~-----~~el~LiDi~~~~~~G~--a~DL~~~~--------~~~~~~~~i~~~~~y~ 65 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL-----GSELVLIDINEEKAEGV--ALDLSHAA--------APLGSDVKITGDGDYE 65 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc-----cceEEEEEcccccccch--hcchhhcc--------hhccCceEEecCCChh
Confidence 699999999999999999977763 14899999986552111 11121100 00111223333 344
Q ss_pred HHhcCCCEEEEcc--Cc---c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 140 NAVKDANMLVFVT--PH---Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilav--p~---~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+.++|+|+++. |- . -++++.+++... .++.+++..+|.++
T Consensus 66 -~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvtNPvD 122 (313)
T COG0039 66 -DLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVTNPVD 122 (313)
T ss_pred -hhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEecCcHH
Confidence 488999999988 22 1 133444455554 35788888888665
No 183
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.50 E-value=0.00088 Score=65.80 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=65.7
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec---CC
Q 014739 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD---PD 137 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~---~~ 137 (419)
|||+|||+ |.+|+.+|..|+..+. ..++.++|++ ++.++. -.++..- .+..++.. ++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~-----~~elvLiDi~--~a~g~a--lDL~~~~----------~~~~i~~~~~~~~ 61 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL-----VSELALYDIV--NTPGVA--ADLSHIN----------TPAKVTGYLGPEE 61 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----CcEEEEEecC--ccceee--hHhHhCC----------CcceEEEecCCCc
Confidence 69999999 9999999999998873 1579999987 322221 1222210 01134432 23
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+.++++|+||++.-.. -+.++.+.+.++ .++.+++..+|.++
T Consensus 62 ~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvD 121 (310)
T cd01337 62 LKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVN 121 (310)
T ss_pred hHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchh
Confidence 335589999999987541 234444555555 57889999999654
No 184
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.50 E-value=0.00038 Score=68.58 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=66.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+++|||+|..+..-+..+..-- . . .+|++|+|++++ .+.+++.+++.+ ..+...++.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~-~---i-~~v~v~~r~~~~--a~~~~~~~~~~~------------~~v~~~~~~~ 187 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVT-D---C-RQLWVWGRSETA--LEEYRQYAQALG------------FAVNTTLDAA 187 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC-C---C-CEEEEECCCHHH--HHHHHHHHHhcC------------CcEEEECCHH
Confidence 3468999999999999988887642 1 1 689999999876 333334343322 1355678888
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++.+||+|+.||++.. .+++ ..++++|+.|..+.
T Consensus 188 ~av~~ADIV~taT~s~~--P~~~--~~~l~~G~hi~~iG 222 (315)
T PRK06823 188 EVAHAANLIVTTTPSRE--PLLQ--AEDIQPGTHITAVG 222 (315)
T ss_pred HHhcCCCEEEEecCCCC--ceeC--HHHcCCCcEEEecC
Confidence 99999999999999753 3331 13567788876653
No 185
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.49 E-value=0.00063 Score=67.31 Aligned_cols=109 Identities=23% Similarity=0.193 Sum_probs=67.0
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC--CCCCc--chHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE--TLPSG--EKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~--~~~~~--~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
.||+|+|+ |.+|+.++..|+..+....+...++.++|+++ +.+.+ .++.+... + +......+.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~---------~---~~~~~~i~~ 68 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF---------P---LLKGVVITT 68 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc---------c---ccCCcEEec
Confidence 38999999 99999999999987753222224699999986 44111 11111100 0 001123334
Q ss_pred CHHHHhcCCCEEEEccCc-----ch-----------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 137 DLENAVKDANMLVFVTPH-----QF-----------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~-----~~-----------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+..+++++||+||++--. .. ++++.+.+.++.+++.+++..+|.++
T Consensus 69 ~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 130 (323)
T cd00704 69 DPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN 130 (323)
T ss_pred ChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence 445668999999987643 11 44555666666456778887888654
No 186
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.48 E-value=0.0008 Score=66.39 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 58 VLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
...|.||+|||+ |.+|+.+|..|+..+. ..++.++|++... ++ +..+..... ...+...+
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~-----~~elvL~Di~~~~--g~--a~Dl~~~~~----------~~~v~~~t 65 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPH-----VSELSLYDIVGAP--GV--AADLSHIDT----------PAKVTGYA 65 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCC-----CCEEEEEecCCCc--cc--ccchhhcCc----------CceEEEec
Confidence 456779999998 9999999999986652 1689999994322 11 112221110 01233333
Q ss_pred CH---HHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCccc
Q 014739 137 DL---ENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 137 ~~---~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++ .+++.++|+||++.-.. .++++++.+.++ .++.+++..+|+++.
T Consensus 66 d~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 66 DGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred CCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 32 45689999999887541 122333344443 567788888998764
No 187
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.47 E-value=0.00034 Score=67.49 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=56.1
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+|||. |.||.+||.+|.++| +.|++|.. + +.+++
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~g-------atVtv~~s---~-------------------------------t~~l~ 196 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKN-------ATVTLTHS---R-------------------------------TRNLA 196 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCC-------CEEEEECC---C-------------------------------CCCHH
Confidence 368999998 999999999999999 89999921 1 12456
Q ss_pred HHhcCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.+++||+||.|++... ++.. ++++|+++|++.
T Consensus 197 ~~~~~ADIVI~avg~~~~v~~~------~ik~GavVIDvg 230 (284)
T PRK14179 197 EVARKADILVVAIGRGHFVTKE------FVKEGAVVIDVG 230 (284)
T ss_pred HHHhhCCEEEEecCccccCCHH------HccCCcEEEEec
Confidence 67789999999999743 3332 378899999874
No 188
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.44 E-value=0.00057 Score=62.92 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=58.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-|+|+|+|.|.||..+|..|.+.| ++|.+++++++. .+.+.+. + ....+.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G-------~~Vvv~D~~~~~------~~~~~~~~g--------------~~~v~~ 78 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEG-------AKLIVADINEEA------VARAAELFG--------------ATVVAP 78 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEcCCHHH------HHHHHHHcC--------------CEEEcc
Confidence 44578999999999999999999999 899999988654 4444432 1 112222
Q ss_pred HHHHh-cCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecC
Q 014739 138 LENAV-KDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 138 ~~ea~-~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
++.. .++|+++-|.... -.++.+++ ++ ..+|+.-.|+
T Consensus 79 -~~l~~~~~Dv~vp~A~~~~I~~~~~~~----l~-~~~v~~~AN~ 117 (200)
T cd01075 79 -EEIYSVDADVFAPCALGGVINDDTIPQ----LK-AKAIAGAANN 117 (200)
T ss_pred -hhhccccCCEEEecccccccCHHHHHH----cC-CCEEEECCcC
Confidence 2333 3799999776543 22333333 33 4577777775
No 189
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.44 E-value=0.00066 Score=62.46 Aligned_cols=92 Identities=15% Similarity=0.268 Sum_probs=63.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|+|++||.|++|..+...+.+.-... .-|.++||+.++ +..+.+.- ..+..++++|.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~----e~v~v~D~~~ek------~~~~~~~~-------------~~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDF----ELVAVYDRDEEK------AKELEASV-------------GRRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcce----eEEEEecCCHHH------HHHHHhhc-------------CCCccccHHHH
Confidence 68999999999999988876542100 347889998776 44444321 01233778887
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+.+.|+++-|-..+++++...++... +-+.+|+|.
T Consensus 58 ~~~~DlvVEaAS~~Av~e~~~~~L~~-g~d~iV~SV 92 (255)
T COG1712 58 IAEVDLVVEAASPEAVREYVPKILKA-GIDVIVMSV 92 (255)
T ss_pred hhccceeeeeCCHHHHHHHhHHHHhc-CCCEEEEec
Confidence 89999999999999999988776542 224444444
No 190
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.44 E-value=0.00087 Score=65.81 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=63.3
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCHHHH
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDLENA 141 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~~ea 141 (419)
||+|||+|.+|+.+|..|+..+.. .++.++|.+++++.++ +..+.... .+.....++. ..+.+ .
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~-----~elvL~Di~~~~a~g~--a~DL~~~~-------~~~~~~~~~i~~~~y~-~ 65 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF-----SEIVLIDVNEGVAEGE--ALDFHHAT-------ALTYSTNTKIRAGDYD-D 65 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEeCCcchhhHH--HHHHHhhh-------ccCCCCCEEEEECCHH-H
Confidence 799999999999999999988731 4799999987652111 11222100 0000011222 34555 5
Q ss_pred hcCCCEEEEccCc-----ch-------------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 142 VKDANMLVFVTPH-----QF-------------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~-----~~-------------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++||+||++.-. .. ++++.+.+..+ .++.+++..+|.++
T Consensus 66 ~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvD 123 (307)
T cd05290 66 CADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLD 123 (307)
T ss_pred hCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCcHH
Confidence 8999999998753 11 12222334443 36788888888654
No 191
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.43 E-value=0.0021 Score=61.87 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=63.0
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
||||+|+| +|.||..++..+.+... .++ .+++|.......+++ ..+. +.. +.++..++++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~------~elvav~d~~~~~~~~~~~-~~~~--~~~---------~~gv~~~~d~ 62 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEG------LQLVAAFERHGSSLQGTDA-GELA--GIG---------KVGVPVTDDL 62 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecCCccccCCCH-HHhc--CcC---------cCCceeeCCH
Confidence 47999999 69999999999987531 554 456644221001111 1111 100 1124567788
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++....+|+||.++++....+.+..... .+.-+|..+.|...
T Consensus 63 ~~l~~~~DvVIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~ 104 (266)
T TIGR00036 63 EAVETDPDVLIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSE 104 (266)
T ss_pred HHhcCCCCEEEECCChHHHHHHHHHHHH---CCCCEEEECCCCCH
Confidence 7754568999999999887777655543 45666666667653
No 192
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.41 E-value=0.00041 Score=68.89 Aligned_cols=76 Identities=24% Similarity=0.423 Sum_probs=54.8
Q ss_pred cCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.++|+|||+|.+|.+.+..|.. .+. .+|++|+|++++ .+.+++.+++.. + ..+...++++
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~------~~V~v~~R~~~~--a~~l~~~~~~~~-------g----~~v~~~~d~~ 192 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPI------REVRVWARDAAK--AEAYAADLRAEL-------G----IPVTVARDVH 192 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC------CEEEEEcCCHHH--HHHHHHHHhhcc-------C----ceEEEeCCHH
Confidence 4689999999999998888875 332 689999999876 333333333210 0 1244567888
Q ss_pred HHhcCCCEEEEccCcc
Q 014739 140 NAVKDANMLVFVTPHQ 155 (419)
Q Consensus 140 ea~~~aDlVilavp~~ 155 (419)
+++.++|+|+.|+|+.
T Consensus 193 ~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 193 EAVAGADIIVTTTPSE 208 (330)
T ss_pred HHHccCCEEEEeeCCC
Confidence 8889999999999984
No 193
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.40 E-value=0.0012 Score=65.28 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=67.1
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC--CCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL--PSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~--~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..||+|+|+ |.+|+.++..|...+...++...+|.++|+++.. +.++. -.+.. .. .....++....+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~--~Dl~d-------~~-~~~~~~~~~~~~ 71 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVV--MELQD-------CA-FPLLKSVVATTD 71 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccccee--eehhh-------cc-ccccCCceecCC
Confidence 468999998 9999999999998663211112489999996532 11100 00000 00 000113344566
Q ss_pred HHHHhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 138 LENAVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+++++||+||++.-. . .++++.+.+.++..++.+++..+|.++
T Consensus 72 ~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (325)
T cd01336 72 PEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN 132 (325)
T ss_pred HHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH
Confidence 55668999999987643 1 124445566666556788888888554
No 194
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.38 E-value=0.00078 Score=69.05 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=62.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~ 137 (419)
....+|+|||+|.||..++..|...|. .+|++++|+.++ .+.+.+. +. ......+
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~------~~V~v~~rs~~r------a~~la~~~g~------------~~i~~~~ 233 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGV------GKILIANRTYER------AEDLAKELGG------------EAVKFED 233 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCC------CEEEEEeCCHHH------HHHHHHHcCC------------eEeeHHH
Confidence 344789999999999999999999884 689999998765 3334331 10 0111234
Q ss_pred HHHHhcCCCEEEEccCcch---HHHHHHHHhccCCCCcEEEEeec
Q 014739 138 LENAVKDANMLVFVTPHQF---MEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~---~~~vl~~l~~~l~~~tiivs~~n 179 (419)
..+++.++|+||.|+++.. ..+.++...+.-+...+++++..
T Consensus 234 l~~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 234 LEEYLAEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred HHHHHhhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 5566789999999998632 22233332211012347778764
No 195
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00049 Score=67.90 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=68.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
..++|||+|..+..-...+..--- -.+|.+|+|+++. .++++..+.+.+ +..+...++.+++
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~-----~~~I~i~~r~~~~--~e~~a~~l~~~~-----------~~~v~a~~s~~~a 192 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRD-----IREIRVYSRDPEA--AEAFAARLRKRG-----------GEAVGAADSAEEA 192 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCC-----ccEEEEEcCCHHH--HHHHHHHHHhhc-----------CccceeccCHHHH
Confidence 579999999999999888876420 0689999999876 444444444432 1135677888999
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++||+|+.|||+.. .++ ...++++++.|..+.
T Consensus 193 v~~aDiIvt~T~s~~--Pil--~~~~l~~G~hI~aiG 225 (330)
T COG2423 193 VEGADIVVTATPSTE--PVL--KAEWLKPGTHINAIG 225 (330)
T ss_pred hhcCCEEEEecCCCC--Cee--cHhhcCCCcEEEecC
Confidence 999999999999976 333 235667887776654
No 196
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.36 E-value=0.00059 Score=67.67 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=63.5
Q ss_pred cCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+++|||+|.+|...+..|.. .+. .+|++|+|++++ .+.+++.+.+.. ...+...++++
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i------~~v~V~~R~~~~--a~~~a~~~~~~~-----------g~~v~~~~~~~ 189 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDI------RSARIWARDSAK--AEALALQLSSLL-----------GIDVTAATDPR 189 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCc------cEEEEECCCHHH--HHHHHHHHHhhc-----------CceEEEeCCHH
Confidence 4689999999999999999974 442 579999999876 334444443210 01234567888
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++.++|+|+.|||+.. .++. ...+++++.+..+
T Consensus 190 ~av~~aDiVvtaT~s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 190 AAMSGADIIVTTTPSET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred HHhccCCEEEEecCCCC--cEec--HHHcCCCcEEEee
Confidence 88899999999999843 2221 1235667766543
No 197
>PRK04148 hypothetical protein; Provisional
Probab=97.34 E-value=0.00088 Score=57.31 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=71.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||.+||+| -|..+|..|++.| ++|+.+|.+++. ++..++.+.+... ..+ +..++ +
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G-------~~ViaIDi~~~a------V~~a~~~~~~~v~-------dDl-f~p~~-~ 73 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESG-------FDVIVIDINEKA------VEKAKKLGLNAFV-------DDL-FNPNL-E 73 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHHhCCeEEE-------CcC-CCCCH-H
Confidence 3689999999 9988999999999 999999999875 6666665432110 011 22333 3
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
..+++|+|.-.=|+..+..-+-+++..++.+-+|..+++
T Consensus 74 ~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 74 IYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred HHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 567999999999998888878888888877777777764
No 198
>PRK06046 alanine dehydrogenase; Validated
Probab=97.33 E-value=0.00063 Score=67.46 Aligned_cols=95 Identities=21% Similarity=0.328 Sum_probs=63.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+|+|||+|.+|...+..|..... . ..|.+|+|+++. .+++.+.+++. .+..+...++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~-i----~~v~v~~r~~~~--~~~~~~~~~~~-----------~~~~v~~~~~~~ 189 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFD-L----EEVRVYDRTKSS--AEKFVERMSSV-----------VGCDVTVAEDIE 189 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC-c----eEEEEECCCHHH--HHHHHHHHHhh-----------cCceEEEeCCHH
Confidence 45689999999999999999875421 1 679999999865 23333333321 011244567888
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++. +|+|++|||+.. .+++ ..++++++.|.++
T Consensus 190 ~~l~-aDiVv~aTps~~--P~~~--~~~l~~g~hV~~i 222 (326)
T PRK06046 190 EACD-CDILVTTTPSRK--PVVK--AEWIKEGTHINAI 222 (326)
T ss_pred HHhh-CCEEEEecCCCC--cEec--HHHcCCCCEEEec
Confidence 8776 999999999853 2221 1345678776655
No 199
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.33 E-value=0.0015 Score=66.88 Aligned_cols=112 Identities=14% Similarity=0.045 Sum_probs=68.3
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCC--CCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSS--FHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~--~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.-||+|||+ |.+|+.+|..|+..++..++ +..++.++|++++++.++ +-.++..- ..+..++.++.+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~--amDL~daa--------~~~~~~v~i~~~ 169 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGV--AMELEDSL--------YPLLREVSIGID 169 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHH--HHHHHHhh--------hhhcCceEEecC
Confidence 458999999 99999999999988211100 113788999988762221 11222210 001113443334
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+.+++||+||++--.. .++++.+.|.++.+++.++|..+|.++
T Consensus 170 ~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD 230 (444)
T PLN00112 170 PYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN 230 (444)
T ss_pred CHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH
Confidence 445589999999987541 144445556564467888888888654
No 200
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.33 E-value=0.0009 Score=61.60 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=31.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
...||+|+|+|.||+.+|..|+++|. .+++++|++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv------g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI------GKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC------CEEEEECCC
Confidence 34689999999999999999999993 479999998
No 201
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.32 E-value=0.001 Score=65.37 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=65.2
Q ss_pred eEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-c-C-CH
Q 014739 63 KVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-D-P-DL 138 (419)
Q Consensus 63 kI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~-~-~~ 138 (419)
||+|||+ |.+|+.+|..|+..+.. .++.++|+++.. ++. -.+.. . ..+..++. + . ++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~-----~elvL~Di~~a~--g~a--~DL~~-~---------~~~~~i~~~~~~~~~ 61 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV-----SELSLYDIAGAA--GVA--ADLSH-I---------PTAASVKGFSGEEGL 61 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC-----cEEEEecCCCCc--EEE--chhhc-C---------CcCceEEEecCCCch
Confidence 7999999 99999999999988731 479999987622 211 11221 1 01123444 2 2 23
Q ss_pred HHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 139 ENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++++++|+||++.-.. .++++.+.+.++ .++.+++..+|.++
T Consensus 62 ~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvD 120 (312)
T TIGR01772 62 ENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVN 120 (312)
T ss_pred HHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchh
Confidence 45689999999887541 244444555555 57889999999664
No 202
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.32 E-value=0.00053 Score=70.82 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=60.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|+|.|+|+|.+|..++..|.+.| ++|++++++++. .+.+.+ .+.... .++ ..-....++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g-------~~v~vid~~~~~------~~~~~~~~~~~~~-~gd------~~~~~~l~~ 60 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN-------NDVTVIDTDEER------LRRLQDRLDVRTV-VGN------GSSPDVLRE 60 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-------CcEEEEECCHHH------HHHHHhhcCEEEE-EeC------CCCHHHHHH
Confidence 68999999999999999999999 899999998765 555544 221100 000 000112233
Q ss_pred H-hcCCCEEEEccCcchHHHHHHHHhccC-CCCcEEE
Q 014739 141 A-VKDANMLVFVTPHQFMEGICKRLVGKV-NGDVEAI 175 (419)
Q Consensus 141 a-~~~aDlVilavp~~~~~~vl~~l~~~l-~~~tiiv 175 (419)
+ +.++|.||++++.......+......+ +...+++
T Consensus 61 ~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 61 AGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred cCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 3 568999999999866655544444433 3333443
No 203
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.32 E-value=0.00089 Score=68.89 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=64.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|+|.|.+|..+|..|...| .+|+++++++.+ .......| ++ ..+.+
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~G-------a~ViV~e~dp~~------a~~A~~~G--------------~~-~~~le 304 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFG-------ARVVVTEIDPIC------ALQAAMEG--------------YQ-VVTLE 304 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCchh------HHHHHhcC--------------ce-eccHH
Confidence 3468999999999999999999999 899999988754 21111112 12 23566
Q ss_pred HHhcCCCEEEEccCcchHHHHH-HHHhccCCCCcEEEEeecC
Q 014739 140 NAVKDANMLVFVTPHQFMEGIC-KRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl-~~l~~~l~~~tiivs~~nG 180 (419)
++++.+|+|++++.... ++ .+....++++.+++.+.-+
T Consensus 305 ell~~ADIVI~atGt~~---iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 305 DVVETADIFVTATGNKD---IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred HHHhcCCEEEECCCccc---ccCHHHHhccCCCcEEEEcCCC
Confidence 77889999999976433 33 2444567889999987654
No 204
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.30 E-value=0.00065 Score=66.02 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=61.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.++|.|||+|.+|.+++..|++.|. .+|++++|+.++ .+.+++.+.... +.. .+....+..+
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~------~~I~I~nR~~~k--a~~la~~l~~~~------~~~----~~~~~~~~~~ 188 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGV------ERLTIFDVDPAR--AAALADELNARF------PAA----RATAGSDLAA 188 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC------CEEEEECCCHHH--HHHHHHHHHhhC------CCe----EEEeccchHh
Confidence 4689999999999999999999993 489999999876 333334333211 000 1222234444
Q ss_pred HhcCCCEEEEccCcchHHHHHHHH-hccCCCCcEEEEee
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRL-VGKVNGDVEAISLI 178 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l-~~~l~~~tiivs~~ 178 (419)
.+.++|+||-|||.-.....-..+ ...++++.+++++.
T Consensus 189 ~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~Div 227 (284)
T PRK12549 189 ALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIV 227 (284)
T ss_pred hhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEee
Confidence 567899999999863110000001 12355667777765
No 205
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.29 E-value=0.00067 Score=65.39 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=60.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+++.|+|+|.+|.+++..|++.| ++|++++|++++ .+++.+.+...+ .+...+..+.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g-------~~v~v~~R~~~~--~~~la~~~~~~~-------------~~~~~~~~~~ 174 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKAD-------CNVIIANRTVSK--AEELAERFQRYG-------------EIQAFSMDEL 174 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC-------CEEEEEeCCHHH--HHHHHHHHhhcC-------------ceEEechhhh
Confidence 468999999999999999999999 899999998765 233333332211 0111111112
Q ss_pred HhcCCCEEEEccCcch---HHHHHHHHhccCCCCcEEEEeec
Q 014739 141 AVKDANMLVFVTPHQF---MEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~---~~~vl~~l~~~l~~~tiivs~~n 179 (419)
...++|+||.|+|... .++..- ....++++.+++++.-
T Consensus 175 ~~~~~DivInatp~gm~~~~~~~~~-~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 175 PLHRVDLIINATSAGMSGNIDEPPV-PAEKLKEGMVVYDMVY 215 (270)
T ss_pred cccCccEEEECCCCCCCCCCCCCCC-CHHHcCCCCEEEEecc
Confidence 2357999999999732 211100 0123567888888853
No 206
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.28 E-value=0.002 Score=65.35 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=63.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-.+|+|+|.|.+|..+|..+...| .+|+++++++.+ .......| ... .+.++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~G-------a~ViV~d~dp~r------~~~A~~~G--------------~~v-~~lee 246 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMG-------ARVIVTEVDPIR------ALEAAMDG--------------FRV-MTMEE 246 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCc-------CEEEEEeCChhh------HHHHHhcC--------------CEe-CCHHH
Confidence 458999999999999999999999 899999998754 22222222 112 23456
Q ss_pred HhcCCCEEEEccCcchHHHHHH-HHhccCCCCcEEEEeec
Q 014739 141 AVKDANMLVFVTPHQFMEGICK-RLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~-~l~~~l~~~tiivs~~n 179 (419)
++..+|+||.++.... ++. .....++++.+++...-
T Consensus 247 al~~aDVVItaTG~~~---vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 247 AAKIGDIFITATGNKD---VIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred HHhcCCEEEECCCCHH---HHHHHHHhcCCCCcEEEEECC
Confidence 7889999999987543 232 34566788888887754
No 207
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.27 E-value=0.00048 Score=69.61 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=55.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~ 137 (419)
-...|+.|||+|-||...|..|+++|. .+|++.+|+.++ ++.+.+. +. .+...++
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~------~~i~IaNRT~er------A~~La~~~~~------------~~~~l~e 231 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGV------KKITIANRTLER------AEELAKKLGA------------EAVALEE 231 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCC------CEEEEEcCCHHH------HHHHHHHhCC------------eeecHHH
Confidence 355789999999999999999999995 789999999887 4444432 11 1223456
Q ss_pred HHHHhcCCCEEEEccCc
Q 014739 138 LENAVKDANMLVFVTPH 154 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~ 154 (419)
..+.+.++|+||.+|.+
T Consensus 232 l~~~l~~~DvVissTsa 248 (414)
T COG0373 232 LLEALAEADVVISSTSA 248 (414)
T ss_pred HHHhhhhCCEEEEecCC
Confidence 66678899999999876
No 208
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.26 E-value=0.0017 Score=66.35 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=63.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|+|+|.+|..+|..|...| .+|+++++++.+ .......| ... .+.+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G-------a~ViV~d~dp~r------a~~A~~~G--------------~~v-~~l~ 262 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG-------ARVIVTEVDPIC------ALQAAMDG--------------FRV-MTME 262 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEcCCchh------hHHHHhcC--------------CEe-cCHH
Confidence 3468999999999999999999999 899999998765 22222222 122 2456
Q ss_pred HHhcCCCEEEEccCcchHHHHHH-HHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICK-RLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~-~l~~~l~~~tiivs~~ 178 (419)
+++..+|+||.++.... ++. .....++++.+++...
T Consensus 263 eal~~aDVVI~aTG~~~---vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 263 EAAELGDIFVTATGNKD---VITAEHMEAMKDGAILANIG 299 (425)
T ss_pred HHHhCCCEEEECCCCHH---HHHHHHHhcCCCCCEEEEcC
Confidence 77889999999986543 332 3456678888888764
No 209
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.25 E-value=0.00069 Score=66.79 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=59.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcC-CCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNT-LRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G-~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...+++|||+|..|..-+..+..-- . .+|.+|+|+++. .+++++.+++.+ ..+...+++
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i------~~v~v~~r~~~~--~~~~~~~~~~~~------------~~v~~~~~~ 186 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPI------KEVRVYSRSPER--AEAFAARLRDLG------------VPVVAVDSA 186 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--------SEEEEE-SSHHH--HHHHHHHHHCCC------------TCEEEESSH
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCc------eEEEEEccChhH--HHHHHHhhcccc------------ccceeccch
Confidence 3458999999999999888887642 2 689999999865 445555555411 135677899
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++++++||+|+.||++.....+++ ..++++++.|..+.
T Consensus 187 ~~av~~aDii~taT~s~~~~P~~~--~~~l~~g~hi~~iG 224 (313)
T PF02423_consen 187 EEAVRGADIIVTATPSTTPAPVFD--AEWLKPGTHINAIG 224 (313)
T ss_dssp HHHHTTSSEEEE----SSEEESB---GGGS-TT-EEEE-S
T ss_pred hhhcccCCEEEEccCCCCCCcccc--HHHcCCCcEEEEec
Confidence 999999999999999865212221 24677888877664
No 210
>PRK05086 malate dehydrogenase; Provisional
Probab=97.24 E-value=0.0029 Score=62.32 Aligned_cols=102 Identities=12% Similarity=0.206 Sum_probs=63.5
Q ss_pred CeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe--cCC
Q 014739 62 SKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA--DPD 137 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~--~~~ 137 (419)
|||+|||+ |.+|.+++..|... +. .+++.++++++.. .++ +-.+.... ....++. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~-----~~el~L~d~~~~~-~g~--alDl~~~~----------~~~~i~~~~~~d 62 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA-----GSELSLYDIAPVT-PGV--AVDLSHIP----------TAVKIKGFSGED 62 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC-----ccEEEEEecCCCC-cce--ehhhhcCC----------CCceEEEeCCCC
Confidence 79999999 99999999988653 21 1689999987532 111 01121100 0011232 346
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+++.++|+||+|.-.. .+.++++.+.++ .++.+++..+|..+
T Consensus 63 ~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 63 PTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred HHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 555688999999998641 233444555554 56788888888654
No 211
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.24 E-value=0.00064 Score=69.45 Aligned_cols=75 Identities=11% Similarity=0.153 Sum_probs=54.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...+||.|||+|.||..++..|+..|. .++++++|+.++ ++.+.+.- ++ ..+...++.
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~------~~I~V~nRt~~r------a~~La~~~------~~----~~~~~~~~l 236 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAP------KQIMLANRTIEK------AQKITSAF------RN----ASAHYLSEL 236 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCC------CEEEEECCCHHH------HHHHHHHh------cC----CeEecHHHH
Confidence 344689999999999999999999983 589999999766 45554421 00 011223455
Q ss_pred HHHhcCCCEEEEccCcc
Q 014739 139 ENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~ 155 (419)
.+.+.++|+||.||++.
T Consensus 237 ~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 237 PQLIKKADIIIAAVNVL 253 (414)
T ss_pred HHHhccCCEEEECcCCC
Confidence 56688999999999973
No 212
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.24 E-value=0.00091 Score=65.53 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=66.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+++|||+|..|..-+..+..-- . + .+|.+|+|++++ .+++++.+.+.. ...+....+++
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~-~---i-~~v~v~~r~~~~--a~~f~~~~~~~~-----------~~~v~~~~~~~ 177 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVY-N---P-KRIRVYSRNFDH--ARAFAERFSKEF-----------GVDIRPVDNAE 177 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcC-C---C-CEEEEECCCHHH--HHHHHHHHHHhc-----------CCcEEEeCCHH
Confidence 3468999999999999988887642 1 1 689999999876 344444444321 11355678899
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++.+||+|+.||++.. .+++ ..++++++.|..+
T Consensus 178 eav~~aDIV~taT~s~~--P~~~--~~~l~pg~hV~ai 211 (301)
T PRK06407 178 AALRDADTITSITNSDT--PIFN--RKYLGDEYHVNLA 211 (301)
T ss_pred HHHhcCCEEEEecCCCC--cEec--HHHcCCCceEEec
Confidence 99999999999999853 2221 1345677665544
No 213
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.21 E-value=0.0053 Score=61.39 Aligned_cols=100 Identities=22% Similarity=0.376 Sum_probs=62.0
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCH
Q 014739 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDL 138 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~ 138 (419)
|||+|+|+ |.+|.-+.+.|.+.-. .++. ++++++.. + +.+.....+ +.+. ...... .+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~------~el~~l~~s~~sa--g----k~~~~~~~~---l~~~---~~~~~~~~~~ 62 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE------VEITYLVSSRESA--G----KPVSEVHPH---LRGL---VDLNLEPIDE 62 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC------ceEEEEeccchhc--C----CChHHhCcc---cccc---CCceeecCCH
Confidence 68999998 9999999999987631 5666 44544322 1 112211100 0000 011111 244
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++...++|+||+|+|.....++...+.. .+..||++++..-
T Consensus 63 ~~~~~~~DvVf~alP~~~s~~~~~~~~~---~G~~VIDlS~~fR 103 (346)
T TIGR01850 63 EEIAEDADVVFLALPHGVSAELAPELLA---AGVKVIDLSADFR 103 (346)
T ss_pred HHhhcCCCEEEECCCchHHHHHHHHHHh---CCCEEEeCChhhh
Confidence 4544589999999999888887776654 4788999986543
No 214
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.20 E-value=0.0021 Score=64.86 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=65.9
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEE--ecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMW--VFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~--~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..||+|||+ |.+|+.+|..|+..+....+-...+.++ +++.+++.++ +-.+...- . .+..++.++++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~--a~DL~d~a-----~---~~~~~v~i~~~ 113 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGV--AMELEDSL-----Y---PLLREVSIGID 113 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHH--HHHHHHhh-----h---hhcCceEEecC
Confidence 479999999 9999999999998885210000134445 6666552111 11222100 0 00113444434
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+.+++||+||++--.. .++++.+.|.++.+++.+++..+|.++
T Consensus 114 ~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD 174 (387)
T TIGR01757 114 PYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN 174 (387)
T ss_pred CHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH
Confidence 445589999999976431 144455556666567888888888654
No 215
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.20 E-value=0.00071 Score=61.76 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=61.1
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe--cC
Q 014739 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA--DP 136 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~--~~ 136 (419)
..+++.|+|+ |.+|..++..|++.| ++|++++|+.++ .+++.+.+.+.. +. .+.. ..
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g-------~~V~l~~R~~~~--~~~l~~~l~~~~-------~~----~~~~~~~~ 86 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREG-------ARVVLVGRDLER--AQKAADSLRARF-------GE----GVGAVETS 86 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-------CEEEEEcCCHHH--HHHHHHHHHhhc-------CC----cEEEeeCC
Confidence 3468999995 999999999999999 899999998765 223333332110 00 1111 12
Q ss_pred C---HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 137 D---LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 ~---~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+ ..+++.++|+||.+++.... .........+++.+++++.
T Consensus 87 ~~~~~~~~~~~~diVi~at~~g~~--~~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 87 DDAARAAAIKGADVVFAAGAAGVE--LLEKLAWAPKPLAVAADVN 129 (194)
T ss_pred CHHHHHHHHhcCCEEEECCCCCce--echhhhcccCceeEEEEcc
Confidence 2 23567889999999997543 1111222334467788774
No 216
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.18 E-value=0.00092 Score=67.43 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=62.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+|.|||+|.+|...+..+...| .+|++++|++++ .+.+....... +.. ...-..++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-------a~V~v~d~~~~~------~~~l~~~~g~~-----v~~--~~~~~~~l~ 225 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-------ATVTILDINIDR------LRQLDAEFGGR-----IHT--RYSNAYEIE 225 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-------CeEEEEECCHHH------HHHHHHhcCce-----eEe--ccCCHHHHH
Confidence 4467999999999999999999999 789999998754 34443321100 000 000012345
Q ss_pred HHhcCCCEEEEccCc--chHHH-HHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPH--QFMEG-ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~--~~~~~-vl~~l~~~l~~~tiivs~~ 178 (419)
+.+.++|+||.|++. ..... +-++....++++.+|+++.
T Consensus 226 ~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 226 DAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred HHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 567899999999842 11111 1133334467788888875
No 217
>PLN00106 malate dehydrogenase
Probab=97.16 E-value=0.0026 Score=62.84 Aligned_cols=102 Identities=21% Similarity=0.306 Sum_probs=64.9
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe---cC
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA---DP 136 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~---~~ 136 (419)
..||+|||+ |.+|+.+|..|+.++. ..++.++|+++.. ++. ..+..... +..+.. .+
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~-----~~el~L~Di~~~~--g~a--~Dl~~~~~----------~~~i~~~~~~~ 78 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPL-----VSELHLYDIANTP--GVA--ADVSHINT----------PAQVRGFLGDD 78 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----CCEEEEEecCCCC--eeE--chhhhCCc----------CceEEEEeCCC
Confidence 359999999 9999999999998773 1589999987622 111 12221110 002222 34
Q ss_pred CHHHHhcCCCEEEEccCc-----ch-----------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 137 DLENAVKDANMLVFVTPH-----QF-----------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~-----~~-----------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.++++++|+||++.-. .. +.++.+.+.++ .++.+++..+|-.+
T Consensus 79 d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD 139 (323)
T PLN00106 79 QLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVN 139 (323)
T ss_pred CHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCcc
Confidence 456678999999998643 11 33334445444 46889999998664
No 218
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.15 E-value=0.0043 Score=60.43 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|.++||+|||+|.+|+-+...+.+... .++ .+++++++. +. .+.-++.|.. ...++
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~------velvAVvdid~es---~g-la~A~~~Gi~-------------~~~~~ 58 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEH------LEPGAMVGIDPES---DG-LARARRLGVA-------------TSAEG 58 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCC------cEEEEEEeCChhh---HH-HHHHHHcCCC-------------cccCC
Confidence 556899999999999998888876431 455 467777653 00 1112222211 11245
Q ss_pred HHHHh-----cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014739 138 LENAV-----KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~-----~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
.++.+ .+.|+||++++.....+....+.+ .|..+++.+.
T Consensus 59 ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~~a~e---aGk~VID~sP 102 (302)
T PRK08300 59 IDGLLAMPEFDDIDIVFDATSAGAHVRHAAKLRE---AGIRAIDLTP 102 (302)
T ss_pred HHHHHhCcCCCCCCEEEECCCHHHHHHHHHHHHH---cCCeEEECCc
Confidence 55554 468999999999777776655543 4777777653
No 219
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.15 E-value=0.0032 Score=64.13 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=62.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
.+|+|+|+|.+|...+..+...| .+|+++++++.+ .+.....|. .. .+.+++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-------a~ViV~d~d~~R------~~~A~~~G~--------------~~-~~~~e~ 254 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-------ARVIVTEVDPIC------ALQAAMEGY--------------EV-MTMEEA 254 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-------CEEEEEECChhh------HHHHHhcCC--------------EE-ccHHHH
Confidence 58999999999999999999999 789999998765 333333331 11 134566
Q ss_pred hcCCCEEEEccCcchHHHHHH-HHhccCCCCcEEEEee
Q 014739 142 VKDANMLVFVTPHQFMEGICK-RLVGKVNGDVEAISLI 178 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~-~l~~~l~~~tiivs~~ 178 (419)
+..+|+||.|+.... ++. .....++++.+++.+.
T Consensus 255 v~~aDVVI~atG~~~---~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 255 VKEGDIFVTTTGNKD---IITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HcCCCEEEECCCCHH---HHHHHHHhcCCCCcEEEEeC
Confidence 788999999987643 232 3355677888888775
No 220
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.12 E-value=0.0018 Score=57.89 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=55.7
Q ss_pred CCcCeEEEECcchH-HHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 59 LHKSKVTVVGSGNW-GSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~m-G~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-.+|.|||+|.| |..++..|.+.| .+|++.+|+.+ +
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g-------~~V~v~~r~~~----------------------------------~ 80 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRN-------ATVTVCHSKTK----------------------------------N 80 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCC-------CEEEEEECCch----------------------------------h
Confidence 44578999999997 888999999999 78999987632 1
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+.+.+.++|+||.||+...+ +-.+ .++++.++|++..
T Consensus 81 l~~~l~~aDiVIsat~~~~i--i~~~---~~~~~~viIDla~ 117 (168)
T cd01080 81 LKEHTKQADIVIVAVGKPGL--VKGD---MVKPGAVVIDVGI 117 (168)
T ss_pred HHHHHhhCCEEEEcCCCCce--ecHH---HccCCeEEEEccC
Confidence 22357789999999998542 1111 3456788888863
No 221
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.10 E-value=0.0013 Score=58.11 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=55.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+++.|+|.|.+|..+|..|...| ..|++++++|-+ ..++..+ | .+. .+.+++
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G-------a~V~V~e~DPi~-----alqA~~d-G--------------f~v-~~~~~a 75 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG-------ARVTVTEIDPIR-----ALQAAMD-G--------------FEV-MTLEEA 75 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT--------EEEEE-SSHHH-----HHHHHHT-T---------------EE-E-HHHH
T ss_pred CEEEEeCCCcccHHHHHHHhhCC-------CEEEEEECChHH-----HHHhhhc-C--------------cEe-cCHHHH
Confidence 58999999999999999999999 899999998732 1333332 2 233 357788
Q ss_pred hcCCCEEEEccCcchH--HHHHHHHhccCCCCcEEEEee
Q 014739 142 VKDANMLVFVTPHQFM--EGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 142 ~~~aDlVilavp~~~~--~~vl~~l~~~l~~~tiivs~~ 178 (419)
+..+|++|.+|-...+ .+-+ ..+++++++.++.
T Consensus 76 ~~~adi~vtaTG~~~vi~~e~~----~~mkdgail~n~G 110 (162)
T PF00670_consen 76 LRDADIFVTATGNKDVITGEHF----RQMKDGAILANAG 110 (162)
T ss_dssp TTT-SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESS
T ss_pred HhhCCEEEECCCCccccCHHHH----HHhcCCeEEeccC
Confidence 9999999999987653 3333 3356788887664
No 222
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.10 E-value=0.002 Score=63.42 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=46.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.++||+|+|+|+||...+..+.++.. .++. +++|++. +.+.+ .. ++..+.+.
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd------~ELVgV~dr~~~--------~~~~~-~~------------~v~~~~d~ 54 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPD------MELVGVFSRRGA--------ETLDT-ET------------PVYAVADD 54 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCC------cEEEEEEcCCcH--------HHHhh-cC------------CccccCCH
Confidence 45899999999999999999987631 5654 5677641 11221 11 12233455
Q ss_pred HHHhcCCCEEEEccCcch
Q 014739 139 ENAVKDANMLVFVTPHQF 156 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~ 156 (419)
++...+.|+|++|+|+..
T Consensus 55 ~e~l~~iDVViIctPs~t 72 (324)
T TIGR01921 55 EKHLDDVDVLILCMGSAT 72 (324)
T ss_pred HHhccCCCEEEEcCCCcc
Confidence 556678999999999743
No 223
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.09 E-value=0.0026 Score=62.94 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=64.1
Q ss_pred eEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC--CCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 63 KVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL--PSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 63 kI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~--~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||+|||+ |.+|+.+|..|+..+....+...++.++|+++.. +.++ +..+.. .. ..+...+..+++..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~--~~Dl~d-------~~-~~~~~~~~~~~~~~ 70 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGV--VMELMD-------CA-FPLLDGVVPTHDPA 70 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccccccee--Eeehhc-------cc-chhcCceeccCChH
Confidence 6999999 9999999999998774210001269999986542 1111 001111 00 00011233333434
Q ss_pred HHhcCCCEEEEccCc----ch------------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 140 NAVKDANMLVFVTPH----QF------------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~----~~------------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++.++|+||++--. .. ++++.+.+.++-+++.+++..+|.++
T Consensus 71 ~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD 129 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN 129 (324)
T ss_pred HHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 568999999998643 11 34444556665446788888888654
No 224
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.07 E-value=0.0027 Score=69.12 Aligned_cols=118 Identities=10% Similarity=0.062 Sum_probs=77.9
Q ss_pred EEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---------ce--EEEeCcchHH-HH
Q 014739 148 LVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---------SC--CVLMGANIAN-EI 215 (419)
Q Consensus 148 Vilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---------~~--~v~~gp~~a~-e~ 215 (419)
||+|+|...+.++++++.++++++++|.++.. + ...+.+.+.+.++. ++ .-.+|+..+. ++
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~S-v------K~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~L 73 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGS-T------KSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADL 73 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCc-c------cHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhH
Confidence 69999999999999999999999999988753 1 11222333333321 11 1223333333 56
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHH
Q 014739 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAG 272 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g 272 (419)
+.|....++.....+.+.++++.+++...|.++...+.-.+++..+. +.|+++.+..
T Consensus 74 f~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~ 133 (673)
T PRK11861 74 YVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALV 133 (673)
T ss_pred hCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77876655554444678889999999999988888776666665444 5666655543
No 225
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.05 E-value=0.0035 Score=59.68 Aligned_cols=89 Identities=10% Similarity=0.095 Sum_probs=59.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+||+|||.|+||..++..|.+.+.. ..++. +++|++++ .+.+... ....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~----~~~l~~V~~~~~~~------~~~~~~~---------------~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQ----PCQLAALTRNAADL------PPALAGR---------------VALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCC----ceEEEEEecCCHHH------HHHhhcc---------------CcccCCHHH
Confidence 6999999999999999998764310 13443 45555433 3333321 235677887
Q ss_pred H-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 141 A-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 141 a-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
. ...+|+|+-|-....+++....+.. .+.-++.++
T Consensus 58 ll~~~~DlVVE~A~~~av~e~~~~iL~---~g~dlvv~S 93 (267)
T PRK13301 58 LLAWRPDLVVEAAGQQAIAEHAEGCLT---AGLDMIICS 93 (267)
T ss_pred HhhcCCCEEEECCCHHHHHHHHHHHHh---cCCCEEEEC
Confidence 5 4789999999999999988877654 344444444
No 226
>PLN02494 adenosylhomocysteinase
Probab=97.02 E-value=0.004 Score=64.04 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=63.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++|+|+|.|.+|..+|..+...| .+|.++++++.+ .......|. .. .+.++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~G-------a~VIV~e~dp~r------~~eA~~~G~--------------~v-v~leE 305 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAG-------ARVIVTEIDPIC------ALQALMEGY--------------QV-LTLED 305 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCchh------hHHHHhcCC--------------ee-ccHHH
Confidence 368999999999999999999888 799999998754 122222221 11 24567
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
++..+|+||.++....+- ..+....++++.+++.+.-
T Consensus 306 al~~ADVVI~tTGt~~vI--~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 306 VVSEADIFVTTTGNKDII--MVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred HHhhCCEEEECCCCccch--HHHHHhcCCCCCEEEEcCC
Confidence 788999999987765431 1333456788899988754
No 227
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.011 Score=57.27 Aligned_cols=230 Identities=17% Similarity=0.133 Sum_probs=132.8
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCc-CCccCCC-C-ccCCCe---
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNE-NVKYLPG-I-KLGKNV--- 132 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~-~~~~~~~-~-~l~~~i--- 132 (419)
.+|.++.++|+|...--+|..|...|. ..+-+++|...+ .|++.++++..-. ....-++ . .+..++
T Consensus 2 ~~m~~vLllGtGpvaIQlAv~l~~h~d------~~lg~~~r~s~r--se~l~qala~~~ql~l~~q~eahr~leg~~~id 73 (431)
T COG4408 2 HNMLPVLLLGTGPVAIQLAVDLSAHGD------ARLGLYNRPSTR--SERLKQALALTPQLYLQGQGEAHRQLEGSVTID 73 (431)
T ss_pred CcccceeEeecCcHHHHHHHHHHhccC------ceeeccCCCCch--hHHHHHHHhcCCeEEEEeccHHHHhhcCceehh
Confidence 456789999999999999999999883 788899987654 5666676664210 0000000 0 011111
Q ss_pred EecCCHHHHhcCCCEEEEccCcchHHHHHHHHhc-cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEE-----
Q 014739 133 VADPDLENAVKDANMLVFVTPHQFMEGICKRLVG-KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVL----- 206 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~-~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~----- 206 (419)
....+++++..+.+-+|+|||.+.-.+++++|-- .++.-+.+|-++..++.. ..+...+ ..+|.+..|+
T Consensus 74 ~~~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn----~lv~~~m-nk~~~daeViS~SsY 148 (431)
T COG4408 74 CYIKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSN----LLVQNLM-NKAGRDAEVISLSSY 148 (431)
T ss_pred HHHhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEeccccccc----HHHHHHH-hhhCCCceEEEeehh
Confidence 1235677777899999999999999999988642 233322333333223321 1222332 2234332222
Q ss_pred ---------eCcchHHHHHhcCceeEEEeec-CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH--------HHHHHH
Q 014739 207 ---------MGANIANEIAVEKFSEATVGYR-DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT--------LKNVVA 268 (419)
Q Consensus 207 ---------~gp~~a~e~~~g~~~~~~~~~~-~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a--------l~Ni~a 268 (419)
..|+++-.-+..+ .+-+|+. .+...++++..++...|+.+...+....+|--.. ..|=++
T Consensus 149 ~~dTk~id~~~p~~alTkavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfs 226 (431)
T COG4408 149 YADTKYIDAEQPNRALTKAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFS 226 (431)
T ss_pred cccceeecccCcchHHHHHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhH
Confidence 1244443222221 3455554 4567889999999999999999988877764221 122222
Q ss_pred HHHHh--hhc----CCC---C--ccHHHHHHHHHHHHHHHHHHHhc
Q 014739 269 IAAGF--VDG----LEM---G--NNTKAAIMRIGLREMRAFSKLLF 303 (419)
Q Consensus 269 ~~~g~--~~~----~~~---~--~n~~~~l~~~~~~E~~~la~a~g 303 (419)
+..-. ... .|+ | ......-|+..-.|+.++.+++|
T Consensus 227 L~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ 272 (431)
T COG4408 227 LQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLG 272 (431)
T ss_pred HHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 21111 110 011 1 12334456777889999999996
No 228
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.99 E-value=0.0055 Score=61.02 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|||+|.+|+.+|..|+++|+ ..++++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGv------g~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGI------GKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC------CEEEEEcCCc
Confidence 3689999999999999999999994 4899999874
No 229
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.99 E-value=0.0029 Score=62.99 Aligned_cols=95 Identities=12% Similarity=0.195 Sum_probs=61.3
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||||+|+|+ |..|..+.+.|++.++.. .++..+.+.++. + +.+.-.+. .+...+...
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~----~~l~~l~s~~~~--g----~~l~~~g~------------~i~v~d~~~ 58 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPV----DKLRLLASARSA--G----KELSFKGK------------ELKVEDLTT 58 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCc----ceEEEEEccccC--C----CeeeeCCc------------eeEEeeCCH
Confidence 579999995 999999999999987211 245777665443 1 12211110 122221111
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+.+.++|+||+|+|.....++...+.. .+..||+++..
T Consensus 59 ~~~~~vDvVf~A~g~g~s~~~~~~~~~---~G~~VIDlS~~ 96 (334)
T PRK14874 59 FDFSGVDIALFSAGGSVSKKYAPKAAA---AGAVVIDNSSA 96 (334)
T ss_pred HHHcCCCEEEECCChHHHHHHHHHHHh---CCCEEEECCch
Confidence 235789999999999888777766543 46788888753
No 230
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.98 E-value=0.0023 Score=64.62 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=65.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
..+++|||+|..+..-...++.-. +.+ .+|++|+|++++ .+.+++.+.+. +++. ..+.+.+++++
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~---~~i-~~V~v~~r~~~~--a~~f~~~~~~~------~~~~---~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVC---PGI-DTIKIKGRGQKS--LDSFATWVAET------YPQI---TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhc---CCc-cEEEEECCCHHH--HHHHHHHHHHh------cCCC---ceEEEeCCHHH
Confidence 357999999999999998887632 000 689999999876 34444445432 1110 02556788999
Q ss_pred HhcCCCEEEEccCcch----HHHHHHHHhccCCCCcEEEE
Q 014739 141 AVKDANMLVFVTPHQF----MEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 141 a~~~aDlVilavp~~~----~~~vl~~l~~~l~~~tiivs 176 (419)
++.+||+|+.||++.. ...+++ ..++++|+.|..
T Consensus 220 av~~ADIVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 220 VVRGSDIVTYCNSGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred HHcCCCEEEEccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 9999999999997632 223331 235667876653
No 231
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.98 E-value=0.0036 Score=63.30 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=63.2
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..+|||+|+|+ |..|.-+.+.|.++.. ++|+.+.++++. + +.+.....+.. +...+ .+. ..+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~------~el~~l~s~~sa--G----~~i~~~~~~l~---~~~~~-~~~-~~~ 98 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPD------FEITVMTADRKA--G----QSFGSVFPHLI---TQDLP-NLV-AVK 98 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCC------CeEEEEEChhhc--C----CCchhhCcccc---Ccccc-cee-cCC
Confidence 46679999996 9999999999998842 789988875433 1 11221111100 00110 011 112
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
.++ +.++|+||+|+|.....++...+ ..+..||+++.-.
T Consensus 99 ~~~-~~~~DvVf~Alp~~~s~~i~~~~----~~g~~VIDlSs~f 137 (381)
T PLN02968 99 DAD-FSDVDAVFCCLPHGTTQEIIKAL----PKDLKIVDLSADF 137 (381)
T ss_pred HHH-hcCCCEEEEcCCHHHHHHHHHHH----hCCCEEEEcCchh
Confidence 222 57899999999998766666554 3468899887544
No 232
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.96 E-value=0.0041 Score=55.91 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=29.9
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv------g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV------GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC------CeEEEEeCCE
Confidence 68999999999999999999994 5799999875
No 233
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.91 E-value=0.0024 Score=61.88 Aligned_cols=98 Identities=9% Similarity=0.119 Sum_probs=60.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...++.|+|+|.+|.+++..|+..|. .+|++++|+.++ ++.+.+.... .. .+....+..
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~------~~V~v~~R~~~~------a~~l~~~~~~---~~------~~~~~~~~~ 180 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGV------AEITIVNRTVER------AEELAKLFGA---LG------KAELDLELQ 180 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCC------CEEEEEeCCHHH------HHHHHHHhhh---cc------ceeecccch
Confidence 34689999999999999999999984 589999998765 3444331100 00 011211223
Q ss_pred HHhcCCCEEEEccCcchHHH--HHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEG--ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~--vl~~l~~~l~~~tiivs~~ 178 (419)
+.+.++|+||-|+|...... ...-....++++.+++++.
T Consensus 181 ~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 181 EELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred hccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence 45678999999999743211 0000012345678888875
No 234
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.87 E-value=0.0027 Score=58.48 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|+..|. .+++++|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv------~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGV------GTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC------CeEEEecCCE
Confidence 3589999999999999999999994 5899999873
No 235
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.85 E-value=0.0026 Score=61.79 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=51.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec---CC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD---PD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~---~~ 137 (419)
.+++.|||+|.+|.+++..|++.|. .+|++++|+.++ .+++++.+.... .+... .+
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~------~~i~I~nRt~~k--a~~La~~~~~~~-------------~~~~~~~~~~ 183 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGV------TDITVINRNPDK--LSRLVDLGVQVG-------------VITRLEGDSG 183 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCC------CeEEEEeCCHHH--HHHHHHHhhhcC-------------cceeccchhh
Confidence 4589999999999999999999994 579999999876 333333332211 01111 22
Q ss_pred HHHHhcCCCEEEEccCcc
Q 014739 138 LENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~ 155 (419)
..+.+.++|+||-|||..
T Consensus 184 ~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 184 GLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred hhhcccCCCEEEECCCCC
Confidence 233457899999999973
No 236
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.85 E-value=0.0057 Score=60.82 Aligned_cols=97 Identities=12% Similarity=0.248 Sum_probs=57.8
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-C
Q 014739 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-P 136 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~ 136 (419)
+.|+||+|+|+ |.+|.-+.+.|.+.++.. .++..+. +.+. .++ .+.. .+. ...+. .
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~----~~l~~v~-s~~~-aG~----~l~~--------~~~----~l~~~~~ 59 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPV----GTLHLLA-SSES-AGH----SVPF--------AGK----NLRVREV 59 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCc----eEEEEEE-Cccc-CCC----eecc--------CCc----ceEEeeC
Confidence 35589999996 999999999999876211 2333443 3222 011 1111 110 11221 1
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014739 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+..+ +.++|++|+|+|......+...+.. .|..+|+++.-.
T Consensus 60 ~~~~-~~~vD~vFla~p~~~s~~~v~~~~~---~G~~VIDlS~~f 100 (336)
T PRK05671 60 DSFD-FSQVQLAFFAAGAAVSRSFAEKARA---AGCSVIDLSGAL 100 (336)
T ss_pred ChHH-hcCCCEEEEcCCHHHHHHHHHHHHH---CCCeEEECchhh
Confidence 2223 5789999999997666555555533 478899987543
No 237
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.84 E-value=0.0089 Score=58.51 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=62.6
Q ss_pred EECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCHHHHhcC
Q 014739 66 VVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDLENAVKD 144 (419)
Q Consensus 66 IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~~ea~~~ 144 (419)
|||+|.+|+.+|..|+..+.. .++.++|++++++.+ .+..+...- . ..+.+++.+ .+. +.+++
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~-----~el~L~Di~~~~~~g--~a~Dl~~~~--~------~~~~~~~i~~~~~-~~~~d 64 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA-----DEIVLIDINKDKAEG--EAMDLQHAA--S------FLPTPKKIRSGDY-SDCKD 64 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC-----CEEEEEeCCCChhhH--HHHHHHHhh--c------ccCCCeEEecCCH-HHHCC
Confidence 699999999999999988741 479999998765211 122222210 0 001122333 344 45899
Q ss_pred CCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 145 ANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 145 aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
||+||++.-.. .++++.+.+.++ .++.+++..+|..+
T Consensus 65 aDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 117 (299)
T TIGR01771 65 ADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVD 117 (299)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHH
Confidence 99999987531 144455566664 57788888888543
No 238
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.83 E-value=0.0035 Score=56.10 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=33.0
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|||+|||+ |..|+.+..-..+.| |+|+.+.|++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-------HeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-------HEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-------CeeEEEEeChHh
Confidence 89999995 999999999999999 999999999866
No 239
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.82 E-value=0.0063 Score=68.48 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=56.7
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCCC-------CCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccC
Q 014739 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRL-------SSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLG 129 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~-------~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~ 129 (419)
....|+||+|||+|.||...+..|++..... +.-...|++.+++.+. ++.+.+.. ++..
T Consensus 565 ~~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~------a~~la~~~------~~~~-- 630 (1042)
T PLN02819 565 VTKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKD------AKETVEGI------ENAE-- 630 (1042)
T ss_pred ccccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHH------HHHHHHhc------CCCc--
Confidence 3445779999999999999999998864100 0000137888877654 44444321 1100
Q ss_pred CCeEe-cCCHHHH---hcCCCEEEEccCcchHHHHHHHH
Q 014739 130 KNVVA-DPDLENA---VKDANMLVFVTPHQFMEGICKRL 164 (419)
Q Consensus 130 ~~i~~-~~~~~ea---~~~aDlVilavp~~~~~~vl~~l 164 (419)
.+.. .+|.++. +.++|+||.|+|......+....
T Consensus 631 -~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 631 -AVQLDVSDSESLLKYVSQVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred -eEEeecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHH
Confidence 1223 3454443 36799999999997666665443
No 240
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.81 E-value=0.011 Score=59.06 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=59.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEE-EecCCCCCCcchHHHHH-HhcCcCCc-cCCCC-c-c-CCCeEe
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRM-WVFEETLPSGEKLTDVI-NRTNENVK-YLPGI-K-L-GKNVVA 134 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l-~~r~~~~~~~~~l~~~i-~~~g~~~~-~~~~~-~-l-~~~i~~ 134 (419)
|+||+|+|+|.||..++..+.++.. .+|.. .+++++. ...+ +..|.... ..+.. . + ..++.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d------~eLvav~d~~~~~------~~~la~~~G~~~~~~~~~~~~~~~~~~i~V 68 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPD------MELVGVAKTKPDY------EARVAVEKGYPLYVADPEREKAFEEAGIPV 68 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCC------cEEEEEECCChHH------HHHHHHhcCCCccccCccccccccCCceEE
Confidence 5799999999999999998886531 56554 3333322 1222 22221100 01100 0 1 123556
Q ss_pred cCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 135 DPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
..++++...++|+||.|++.....+..+.... .|..+|+.
T Consensus 69 ~~~~~el~~~vDVVIdaT~~~~~~e~a~~~~~---aGk~VI~~ 108 (341)
T PRK04207 69 AGTIEDLLEKADIVVDATPGGVGAKNKELYEK---AGVKAIFQ 108 (341)
T ss_pred cCChhHhhccCCEEEECCCchhhHHHHHHHHH---CCCEEEEc
Confidence 66777767789999999999777666654433 34555544
No 241
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.81 E-value=0.0074 Score=56.64 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=59.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc--eEEEEecC----CCCCCcchHH---HHHHhcCcCCccCCCCccCCCe
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD--EVRMWVFE----ETLPSGEKLT---DVINRTNENVKYLPGIKLGKNV 132 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~----~~~~~~~~l~---~~i~~~g~~~~~~~~~~l~~~i 132 (419)
+||.|+|+|.+|..++..|.+.|. . +++++||+ .++ .+.+. +.+.+.- .. ..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~------~~~~i~ivdr~gl~~~~r--~~~L~~~~~~la~~~------~~----~~- 86 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGA------KPENIVVVDSKGVIYEGR--EDDLNPDKNEIAKET------NP----EK- 86 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCc------CcceEEEEeCCCcccccc--chhhhHHHHHHHHHh------cc----Cc-
Confidence 689999999999999999999984 4 79999998 333 11111 1122110 00 00
Q ss_pred EecCCHHHHhcCCCEEEEccCcchH-HHHHHHHhccCCCCcEEEEeecC
Q 014739 133 VADPDLENAVKDANMLVFVTPHQFM-EGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~~~~-~~vl~~l~~~l~~~tiivs~~nG 180 (419)
...++.+++.++|+||-+++...+ ++.++.+ .++.+|+.++|.
T Consensus 87 -~~~~l~~~l~~~dvlIgaT~~G~~~~~~l~~m----~~~~ivf~lsnP 130 (226)
T cd05311 87 -TGGTLKEALKGADVFIGVSRPGVVKKEMIKKM----AKDPIVFALANP 130 (226)
T ss_pred -ccCCHHHHHhcCCEEEeCCCCCCCCHHHHHhh----CCCCEEEEeCCC
Confidence 112565677889999999984222 3333333 356778777764
No 242
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.79 E-value=0.0056 Score=60.55 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCcCeEEEECcchHH-HHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 59 LHKSKVTVVGSGNWG-SVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG-~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+.++||+|||+|.++ ...+..+.+.+... .-|.++++++++ ++.+.+.-. + . +.+++
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~----~~vav~d~~~~~------a~~~a~~~~---------~--~-~~~~~ 58 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGL----ELVAVVDRDPER------AEAFAEEFG---------I--A-KAYTD 58 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCce----EEEEEecCCHHH------HHHHHHHcC---------C--C-cccCC
Confidence 467899999999555 56888888776100 246677888765 444444210 0 0 36778
Q ss_pred HHHHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014739 138 LENAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 138 ~~ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
.++.+.+ .|+|++|+|+..-.++..... ..|. -|-+-|.+..
T Consensus 59 ~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL---~aGk-hVl~EKPla~ 102 (342)
T COG0673 59 LEELLADPDIDAVYIATPNALHAELALAAL---EAGK-HVLCEKPLAL 102 (342)
T ss_pred HHHHhcCCCCCEEEEcCCChhhHHHHHHHH---hcCC-EEEEcCCCCC
Confidence 8887764 699999999876666553322 2344 3344565544
No 243
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.76 E-value=0.0098 Score=54.83 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=55.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|.|||+|.+|...+..|.++| .+|++++++... ++ ..+...+. ... ..-.-..
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~g-------a~V~VIs~~~~~----~l-~~l~~~~~-i~~---------~~~~~~~ 65 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYG-------AHIVVISPELTE----NL-VKLVEEGK-IRW---------KQKEFEP 65 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-------CeEEEEcCCCCH----HH-HHHHhCCC-EEE---------EecCCCh
Confidence 34468999999999999999999999 899999865421 11 22222220 000 0001112
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHh
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~ 165 (419)
. .+.++|+||.||.+..+...+....
T Consensus 66 ~-~l~~adlViaaT~d~elN~~i~~~a 91 (202)
T PRK06718 66 S-DIVDAFLVIAATNDPRVNEQVKEDL 91 (202)
T ss_pred h-hcCCceEEEEcCCCHHHHHHHHHHH
Confidence 2 3678999999999988777665554
No 244
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.75 E-value=0.0047 Score=55.24 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=58.6
Q ss_pred EEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014739 64 VTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 64 I~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
|.|+|+ |.+|..++..|.+.| ++|+++.|++++ .+. ..+.+.. ...+.-.++..+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-------~~V~~~~R~~~~------~~~--~~~~~~~-------~~d~~d~~~~~~al 58 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-------HEVTALVRSPSK------AED--SPGVEII-------QGDLFDPDSVKAAL 58 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-------SEEEEEESSGGG------HHH--CTTEEEE-------ESCTTCHHHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCC-------CEEEEEecCchh------ccc--ccccccc-------eeeehhhhhhhhhh
Confidence 789996 999999999999999 999999999875 343 2221110 00000012234567
Q ss_pred cCCCEEEEccCc-----chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 143 KDANMLVFVTPH-----QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 143 ~~aDlVilavp~-----~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++|.||.+++. ...+.+++.+... +...+++..+.|+.
T Consensus 59 ~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~-~~~~~v~~s~~~~~ 102 (183)
T PF13460_consen 59 KGADAVIHAAGPPPKDVDAAKNIIEAAKKA-GVKRVVYLSSAGVY 102 (183)
T ss_dssp TTSSEEEECCHSTTTHHHHHHHHHHHHHHT-TSSEEEEEEETTGT
T ss_pred hhcchhhhhhhhhccccccccccccccccc-ccccceeeeccccC
Confidence 899999999984 2334444444332 22344444444444
No 245
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0064 Score=59.74 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=83.3
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.|+||+|+|+ |.-|.-+.+.|+.... .++.++..++.. + +.+.+...+.....+ ++ .+. -++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~------ve~~~~ss~~~~--g----~~~~~~~p~l~g~~~--l~--~~~-~~~ 63 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD------VELILISSRERA--G----KPVSDVHPNLRGLVD--LP--FQT-IDP 63 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC------eEEEEeechhhc--C----CchHHhCcccccccc--cc--ccc-CCh
Confidence 3789999995 9999999999988752 466666544322 1 223332222111101 11 111 222
Q ss_pred HHH-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc--e-----EEEeC-c
Q 014739 139 ENA-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS--C-----CVLMG-A 209 (419)
Q Consensus 139 ~ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~--~-----~v~~g-p 209 (419)
++. ..+||+||+|+|...-.+++.++.. .+..||+++.-.-.. . .+..++..|.+ . ....| |
T Consensus 64 ~~~~~~~~DvvFlalPhg~s~~~v~~l~~---~g~~VIDLSadfR~~-----d-~~~ye~~Yg~~h~~~~~l~~avYGLp 134 (349)
T COG0002 64 EKIELDECDVVFLALPHGVSAELVPELLE---AGCKVIDLSADFRLK-----D-PEVYEKWYGFTHAGPELLEDAVYGLP 134 (349)
T ss_pred hhhhcccCCEEEEecCchhHHHHHHHHHh---CCCeEEECCcccccC-----C-HHHHHHhhCCCCCCchhhhcccccCc
Confidence 222 3469999999999877777666543 466699998533221 1 23334444421 1 11222 3
Q ss_pred chHHHHHhcCceeEEEeecCCHHHHHHHHHHhCC
Q 014739 210 NIANEIAVEKFSEATVGYRDNREIAEKWVQLFST 243 (419)
Q Consensus 210 ~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~ 243 (419)
..-.+-.++.......||. .....-.+.++++.
T Consensus 135 El~~e~i~~A~lIAnPGCy-pTa~iLal~PL~~~ 167 (349)
T COG0002 135 ELHREKIRGAKLIANPGCY-PTAAILALAPLVKA 167 (349)
T ss_pred ccCHHHHhcCCEeeCCCch-HHHHHHHHHHHHHc
Confidence 3332222222223344555 45666667777765
No 246
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.72 E-value=0.014 Score=55.27 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=70.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
..||.|+|+|.+|.+.|..+...|+ ..++.++|-+++++.+ +.+.-++. ..+--.+++....|..
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~L-----adel~lvDv~~dklkG----E~MDLqH~-----s~f~~~~~V~~~~Dy~- 84 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGL-----ADELVLVDVNEDKLKG----EMMDLQHG-----SAFLSTPNVVASKDYS- 84 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhh-----hhceEEEecCcchhhh----hhhhhccc-----cccccCCceEecCccc-
Confidence 5699999999999999999888873 3689999998775222 12211111 1111123566666665
Q ss_pred HhcCCCEEEEccCcch------------HHHHHHHHhcc---CCCCcEEEEeecCccc
Q 014739 141 AVKDANMLVFVTPHQF------------MEGICKRLVGK---VNGDVEAISLIKGMEV 183 (419)
Q Consensus 141 a~~~aDlVilavp~~~------------~~~vl~~l~~~---l~~~tiivs~~nGi~~ 183 (419)
+-.++++||++.-..+ .-++++.+.|. .+|+++++..+|.+++
T Consensus 85 ~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDi 142 (332)
T KOG1495|consen 85 VSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDI 142 (332)
T ss_pred ccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHH
Confidence 3568999999987632 12233444442 3689999999987764
No 247
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.71 E-value=0.0094 Score=52.68 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=55.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|.|||.|.+|..-+..|.+.| ++|++++ ++. .+.+.+.+ . .... .+.. ..
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~g-------a~V~VIs--p~~------~~~l~~l~-~------i~~~--~~~~-~~ 65 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTG-------AFVTVVS--PEI------CKEMKELP-Y------ITWK--QKTF-SN 65 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEc--Ccc------CHHHHhcc-C------cEEE--eccc-Ch
Confidence 34478999999999999999999999 9999996 333 24444321 0 0000 0011 12
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
++ +.++|+||.++.+..+...+.....
T Consensus 66 ~d-l~~a~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 66 DD-IKDAHLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred hc-CCCceEEEECCCCHHHHHHHHHHHH
Confidence 22 6789999999999887777766554
No 248
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.58 E-value=0.0045 Score=63.68 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=48.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCC-CCCC-ceEEEEecCCCCCCc-chHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRL-SSFH-DEVRMWVFEETLPSG-EKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~-~~~~-~~V~l~~r~~~~~~~-~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|||+|||+|+. +...|.+.=... ++++ .+|.++|.++++.+. ..+++.+.+. ...+-++..|+|.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~---------~g~~~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKE---------NYPEIKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHh---------hCCCeEEEEECCH
Confidence 79999999984 443333221111 1233 689999999865110 1111222111 0112257889999
Q ss_pred HHHhcCCCEEEEccCc
Q 014739 139 ENAVKDANMLVFVTPH 154 (419)
Q Consensus 139 ~ea~~~aDlVilavp~ 154 (419)
++|+++||+||.+.-.
T Consensus 69 ~eAl~gADfVi~~irv 84 (437)
T cd05298 69 EEAFTDADFVFAQIRV 84 (437)
T ss_pred HHHhCCCCEEEEEeee
Confidence 9999999999998764
No 249
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.57 E-value=0.025 Score=54.88 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=57.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
++||+|||+|.||..++..+.+... .++ .+++++++. +. .+.-++.|.. ...++.+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~------~elvaV~d~d~es---~~-la~A~~~Gi~-------------~~~~~~e 57 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEH------LEMVAMVGIDPES---DG-LARARELGVK-------------TSAEGVD 57 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCC------cEEEEEEeCCccc---HH-HHHHHHCCCC-------------EEECCHH
Confidence 3689999999999988777765431 455 467777754 00 0111222211 1234566
Q ss_pred HHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.+. +.|+|++++|.....+......+ .|..+++.+
T Consensus 58 ~ll~~~dIDaV~iaTp~~~H~e~a~~al~---aGk~VIdek 95 (285)
T TIGR03215 58 GLLANPDIDIVFDATSAKAHARHARLLAE---LGKIVIDLT 95 (285)
T ss_pred HHhcCCCCCEEEECCCcHHHHHHHHHHHH---cCCEEEECC
Confidence 5553 58999999999777666655443 466666554
No 250
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.54 E-value=0.013 Score=60.53 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=61.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+++|.|+|+|.+|..++..|.+.| ++|++++++++. .+.+.+.+..... +... .++.+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~-------~~v~vid~~~~~------~~~~~~~~~~~~~-----i~gd---~~~~~ 288 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEG-------YSVKLIERDPER------AEELAEELPNTLV-----LHGD---GTDQE 288 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCHHH------HHHHHHHCCCCeE-----EECC---CCCHH
Confidence 4688999999999999999999999 899999998765 5666553211100 0000 01221
Q ss_pred ---H-HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEE
Q 014739 140 ---N-AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 140 ---e-a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs 176 (419)
+ .+.++|.||+++++....-....+...+....+++-
T Consensus 289 ~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~ 329 (453)
T PRK09496 289 LLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIAL 329 (453)
T ss_pred HHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEE
Confidence 1 246899999999875444333334444444444443
No 251
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.53 E-value=0.0047 Score=63.34 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=49.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCC-CCC-ceEEEEecCCCCCC-cchHHHHHHh-cCcCCccCCCCccCCCeEecCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLS-SFH-DEVRMWVFEETLPS-GEKLTDVINR-TNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~-~~~-~~V~l~~r~~~~~~-~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|||+|||+|+. +...|.+.=...+ +++ .+|.++|.++++.+ -..+++.+.+ .|. +-.+..|+|
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~----------~~~v~~ttD 67 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGA----------DIKFEKTMD 67 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCC----------CeEEEEeCC
Confidence 79999999983 4444333211112 233 68999999986510 0111222222 121 124678999
Q ss_pred HHHHhcCCCEEEEccCc
Q 014739 138 LENAVKDANMLVFVTPH 154 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~ 154 (419)
.++|+++||+||.++-.
T Consensus 68 ~~~Al~gADfVi~~irv 84 (425)
T cd05197 68 LEDAIIDADFVINQFRV 84 (425)
T ss_pred HHHHhCCCCEEEEeeec
Confidence 99999999999998864
No 252
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.53 E-value=0.0059 Score=50.50 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=49.9
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH---HH
Q 014739 64 VTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL---EN 140 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~---~e 140 (419)
|.|+|.|.+|..++..|.+.+ .+|.+++++++. ++.+.+.+....+ ++ .+++ ++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-------~~vvvid~d~~~------~~~~~~~~~~~i~-gd---------~~~~~~l~~ 57 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-------IDVVVIDRDPER------VEELREEGVEVIY-GD---------ATDPEVLER 57 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-------SEEEEEESSHHH------HHHHHHTTSEEEE-S----------TTSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-------CEEEEEECCcHH------HHHHHhccccccc-cc---------chhhhHHhh
Confidence 679999999999999999966 699999998766 6777765532110 00 1122 11
Q ss_pred -HhcCCCEEEEccCcchHH
Q 014739 141 -AVKDANMLVFVTPHQFME 158 (419)
Q Consensus 141 -a~~~aDlVilavp~~~~~ 158 (419)
-+.++|.|++++++....
T Consensus 58 a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 58 AGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp TTGGCESEEEEESSSHHHH
T ss_pred cCccccCEEEEccCCHHHH
Confidence 256899999999975443
No 253
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.50 E-value=0.0095 Score=49.83 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=54.0
Q ss_pred CeEEEEC----cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 62 SKVTVVG----SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIG----aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
++|+||| .+.+|..+...|.++| ++|+.++.+.+. +. +.+...+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G-------~~v~~Vnp~~~~---------i~----------------G~~~y~s 48 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAG-------YEVYPVNPKGGE---------IL----------------GIKCYPS 48 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT--------EEEEESTTCSE---------ET----------------TEE-BSS
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCC-------CEEEEECCCceE---------EC----------------cEEeecc
Confidence 4799999 6999999999999999 899988765422 11 2456677
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhcc
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVGK 167 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~ 167 (419)
++|.-...|++++++|+..+.++++++...
T Consensus 49 l~e~p~~iDlavv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 49 LAEIPEPIDLAVVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp GGGCSST-SEEEE-S-HHHHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEEEcCHHHHHHHHHHHHHc
Confidence 776336899999999999999999998764
No 254
>PRK11579 putative oxidoreductase; Provisional
Probab=96.47 E-value=0.017 Score=57.73 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=56.3
Q ss_pred cCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 61 KSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
++||+|||+|.||.. .+..+.+... .++. ++++++++ ..+. ++ ..+.++|.
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~------~~l~av~d~~~~~---------~~~~------~~------~~~~~~~~ 56 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPG------LELAAVSSSDATK---------VKAD------WP------TVTVVSEP 56 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCC------CEEEEEECCCHHH---------HHhh------CC------CCceeCCH
Confidence 479999999999974 4565655421 5654 56665432 1211 00 12456788
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014739 139 ENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++.+. +.|+|++|+|+....++...... .|.-|+ +-|.+..
T Consensus 57 ~ell~~~~vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~ 99 (346)
T PRK11579 57 QHLFNDPNIDLIVIPTPNDTHFPLAKAALE---AGKHVV-VDKPFTV 99 (346)
T ss_pred HHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---CCCeEE-EeCCCCC
Confidence 88775 57999999998766665544433 344443 4565543
No 255
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.42 E-value=0.012 Score=54.61 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=30.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
..+|+|||+|.+|+.++..|++.|. .+++++|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gv------g~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGV------GNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC------CeEEEEeCC
Confidence 4589999999999999999999995 579999987
No 256
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.42 E-value=0.0059 Score=63.69 Aligned_cols=71 Identities=11% Similarity=0.228 Sum_probs=49.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++++|+|+|.+|.+++..|++.| .+|++++|+.++ .+.+.+.. +. ......+..
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G-------~~V~i~~R~~~~------~~~la~~~-~~----------~~~~~~~~~ 386 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAG-------AELLIFNRTKAH------AEALASRC-QG----------KAFPLESLP 386 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHHh-cc----------ceechhHhc
Confidence 4468999999999999999999999 899999998655 34443311 00 000112222
Q ss_pred HHhcCCCEEEEccCcc
Q 014739 140 NAVKDANMLVFVTPHQ 155 (419)
Q Consensus 140 ea~~~aDlVilavp~~ 155 (419)
+ +.++|+||.|+|..
T Consensus 387 ~-l~~~DiVInatP~g 401 (477)
T PRK09310 387 E-LHRIDIIINCLPPS 401 (477)
T ss_pred c-cCCCCEEEEcCCCC
Confidence 2 46899999999974
No 257
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.39 E-value=0.011 Score=57.23 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=55.6
Q ss_pred CcCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-++|.|||.|. +|.++|..|.+.| ..|++..+.. .++
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~g-------atVtv~~s~t----------------------------------~~l 195 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKN-------ASVTILHSRS----------------------------------KDM 195 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC-------CeEEEEeCCc----------------------------------hhH
Confidence 346899999988 9999999999998 8899887532 123
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++.+++||+||.+++...+ +.. .+++++++||++.
T Consensus 196 ~~~~~~ADIVIsAvg~p~~---i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 196 ASYLKDADVIVSAVGKPGL---VTK--DVVKEGAVIIDVG 230 (286)
T ss_pred HHHHhhCCEEEECCCCCcc---cCH--HHcCCCcEEEEcC
Confidence 4457889999999987543 211 3467889999874
No 258
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.38 E-value=0.018 Score=49.71 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=29.6
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
||.|+|+|.+|+.++..|++.|. ..++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv------~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV------GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC------CEEEEEcCCC
Confidence 68999999999999999999994 5799998763
No 259
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.36 E-value=0.019 Score=57.37 Aligned_cols=95 Identities=9% Similarity=0.174 Sum_probs=59.1
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCH
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDL 138 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~ 138 (419)
.+||+|+|+ |..|.-+.+.|.+.++.. .++..+...+.. + +.+...+. .+... .+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~----~~l~~las~rsa--G----k~~~~~~~------------~~~v~~~~~ 64 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPY----SSLKMLASARSA--G----KKVTFEGR------------DYTVEELTE 64 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCc----ceEEEEEccCCC--C----CeeeecCc------------eeEEEeCCH
Confidence 479999995 999999999999877211 244444433221 1 11111111 11221 233
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+ .+.++|+||+|+|......+...+.. .+..||+++.-.
T Consensus 65 ~-~~~~~D~vf~a~p~~~s~~~~~~~~~---~g~~VIDlS~~f 103 (344)
T PLN02383 65 D-SFDGVDIALFSAGGSISKKFGPIAVD---KGAVVVDNSSAF 103 (344)
T ss_pred H-HHcCCCEEEECCCcHHHHHHHHHHHh---CCCEEEECCchh
Confidence 3 45789999999999877777665543 578999988533
No 260
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.33 E-value=0.0072 Score=64.94 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=62.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH--
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL-- 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~-- 138 (419)
.++|.|+|.|.+|..+++.|.+.| ++++++|.++++ ++.+++.|.+. ++++ .+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-------~~vvvID~d~~~------v~~~~~~g~~v-~~GD---------at~~~~ 456 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK-------MRITVLERDISA------VNLMRKYGYKV-YYGD---------ATQLEL 456 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC-------CCEEEEECCHHH------HHHHHhCCCeE-EEee---------CCCHHH
Confidence 468999999999999999999999 899999999876 67776655321 1111 1222
Q ss_pred -HH-HhcCCCEEEEccCcchHH-HHHHHHhccCCCCcEEEEe
Q 014739 139 -EN-AVKDANMLVFVTPHQFME-GICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 139 -~e-a~~~aDlVilavp~~~~~-~vl~~l~~~l~~~tiivs~ 177 (419)
++ -+++||.+++++++.... .++..++.. .|+..|+.-
T Consensus 457 L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~-~p~~~IiaR 497 (601)
T PRK03659 457 LRAAGAEKAEAIVITCNEPEDTMKIVELCQQH-FPHLHILAR 497 (601)
T ss_pred HHhcCCccCCEEEEEeCCHHHHHHHHHHHHHH-CCCCeEEEE
Confidence 11 156899999999985443 444444443 345444443
No 261
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.33 E-value=0.0086 Score=63.78 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=61.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH--
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL-- 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~-- 138 (419)
.-+|.|+|.|.+|..+++.|.++| ++|.++|.++++ ++.+++.+.+..+ ++ .+++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g-------~~vvvId~d~~~------~~~~~~~g~~~i~-GD---------~~~~~~ 473 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG-------IPLVVIETSRTR------VDELRERGIRAVL-GN---------AANEEI 473 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC-------CCEEEEECCHHH------HHHHHHCCCeEEE-cC---------CCCHHH
Confidence 357999999999999999999999 999999998876 6777664432110 00 1122
Q ss_pred -HH-HhcCCCEEEEccCcchHH-HHHHHHhccCCCCcEEEEee
Q 014739 139 -EN-AVKDANMLVFVTPHQFME-GICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 139 -~e-a~~~aDlVilavp~~~~~-~vl~~l~~~l~~~tiivs~~ 178 (419)
++ -++++|.++++++++... .+...++.. .++..++.-.
T Consensus 474 L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~-~~~~~iiar~ 515 (558)
T PRK10669 474 MQLAHLDCARWLLLTIPNGYEAGEIVASAREK-RPDIEIIARA 515 (558)
T ss_pred HHhcCccccCEEEEEcCChHHHHHHHHHHHHH-CCCCeEEEEE
Confidence 11 145899999999875433 344444443 3444454443
No 262
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.26 E-value=0.019 Score=57.09 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+..+||+|||+ |..|.-+.+.|.+..+. ..++..+..+... ++ .+.- .+. .+.+. +
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~sa--G~----~~~~--------~~~----~~~v~-~ 58 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFP----VGELYALASEESA--GE----TLRF--------GGK----SVTVQ-D 58 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcC--Cc----eEEE--------CCc----ceEEE-e
Confidence 45689999996 99999999999985421 1466666544322 11 1111 111 12232 2
Q ss_pred HHH-HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014739 138 LEN-AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 138 ~~e-a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+++ ...++|++|+|+|...-.++...+.. .+..||+++.-.
T Consensus 59 ~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~g~~VIDlS~~f 100 (336)
T PRK08040 59 AAEFDWSQAQLAFFVAGREASAAYAEEATN---AGCLVIDSSGLF 100 (336)
T ss_pred CchhhccCCCEEEECCCHHHHHHHHHHHHH---CCCEEEECChHh
Confidence 222 23689999999999877777666543 588999988543
No 263
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.24 E-value=0.0052 Score=62.23 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=50.4
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhc--CcCCccCCCCccCCCeEe-cCC--
Q 014739 64 VTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRT--NENVKYLPGIKLGKNVVA-DPD-- 137 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~--g~~~~~~~~~~l~~~i~~-~~~-- 137 (419)
|.|+|+|.+|..++..|++.+. + +|++.+|+.++ ++.+.+. +.+... +.. ..|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~------~~~v~va~r~~~~------~~~~~~~~~~~~~~~---------~~~d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP------FEEVTVADRNPEK------AERLAEKLLGDRVEA---------VQVDVNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC------E-EEEEEESSHHH------HHHHHT--TTTTEEE---------EE--TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCC------CCcEEEEECCHHH------HHHHHhhccccceeE---------EEEecCCHH
Confidence 7899999999999999999872 4 89999999765 4444431 111110 111 122
Q ss_pred -HHHHhcCCCEEEEccCcchHHHHHHH
Q 014739 138 -LENAVKDANMLVFVTPHQFMEGICKR 163 (419)
Q Consensus 138 -~~ea~~~aDlVilavp~~~~~~vl~~ 163 (419)
+.+.++++|+||-|+++..-..+++.
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~ 86 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARA 86 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHH
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHH
Confidence 34567899999999988655555433
No 264
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.22 E-value=0.025 Score=58.57 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=64.7
Q ss_pred CCcCeEEEECc----chHHHHHHHHHHHcCCCCCCCCc--eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCe
Q 014739 59 LHKSKVTVVGS----GNWGSVASKLIASNTLRLSSFHD--EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNV 132 (419)
Q Consensus 59 ~~~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i 132 (419)
....+|+|||+ |.+|..+...|.+.| + +|+.++...+ .+. ++
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~g-------f~g~v~~Vnp~~~---------~i~----------------G~ 52 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGG-------YKGKIYPVNPKAG---------EIL----------------GV 52 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCC-------CCCcEEEECCCCC---------ccC----------------Cc
Confidence 34578999999 889999999999988 5 5655554321 121 23
Q ss_pred EecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014739 133 VADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++..+.++.-...|++++++|...+.++++++... +- ..++.++.|+..
T Consensus 53 ~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~-gv-~~~vi~s~gf~e 101 (447)
T TIGR02717 53 KAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK-GV-KGAVVITAGFKE 101 (447)
T ss_pred cccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc-CC-CEEEEECCCccc
Confidence 45667777555689999999999999999887663 22 344556677754
No 265
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.21 E-value=0.029 Score=55.14 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=54.8
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|+||+||| +|..|.-+.+.|.++.. .++.....+... . + .+.+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~------~~l~~~~s~~~~--------~-------------------~---~~~~ 45 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD------IELLSIPEAKRK--------D-------------------A---AARR 45 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC------eEEEEEecCCCC--------c-------------------c---cCch
Confidence 57999999 59999999999988751 333333322111 0 0 1112
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+...++|+||+|+|...-.++..++.. .++.||+++.-
T Consensus 46 ~~~~~~DvvFlalp~~~s~~~~~~~~~---~g~~VIDlSad 83 (313)
T PRK11863 46 ELLNAADVAILCLPDDAAREAVALIDN---PATRVIDASTA 83 (313)
T ss_pred hhhcCCCEEEECCCHHHHHHHHHHHHh---CCCEEEECChh
Confidence 334679999999999877777766643 57889998753
No 266
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.21 E-value=0.012 Score=60.25 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=48.6
Q ss_pred CeEEEECcchHHH-HHHHHHHHcCCCCCCCC-ceEEEEecC-CCCCC-cchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 62 SKVTVVGSGNWGS-VASKLIASNTLRLSSFH-DEVRMWVFE-ETLPS-GEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~-~~V~l~~r~-~~~~~-~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|||+|||+|+.-+ .+...|++.. ++++ .+|.++|.+ +++.+ -..+++.+.+.. ..+..+..++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~---~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~---------~~~~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRY---EELPVTELVLVDIDEEEKLEIVGALAKRMVKKA---------GLPIKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhcc---ccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh---------CCCeEEEEeCC
Confidence 7999999999643 2233344421 1222 689999998 55410 011112221111 11124678999
Q ss_pred HHHHhcCCCEEEEccCc
Q 014739 138 LENAVKDANMLVFVTPH 154 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~ 154 (419)
.++++.+||+||.+.-.
T Consensus 69 ~~~al~gadfVi~~~~v 85 (419)
T cd05296 69 RREALEGADFVFTQIRV 85 (419)
T ss_pred HHHHhCCCCEEEEEEee
Confidence 99999999999998754
No 267
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.18 E-value=0.016 Score=54.48 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=30.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.+|..|++.|. ..++++|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gv------g~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGV------GKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC------CEEEEEcCCE
Confidence 3589999999999999999999995 6889998753
No 268
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.17 E-value=0.023 Score=55.22 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=63.0
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc----------------chHHHHHHhcCcCCcc-
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG----------------EKLTDVINRTNENVKY- 122 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~----------------~~l~~~i~~~g~~~~~- 122 (419)
||.|+|+|.+|+.+|..|+..|. ..++++|.+.-. +.+ +.+.+.+++..-..+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV------g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~ 74 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV------RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDAT 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC------CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEE
Confidence 68999999999999999999995 678888865311 000 1122222221100000
Q ss_pred -------CCCCccCCC----eE-ecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014739 123 -------LPGIKLGKN----VV-ADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 123 -------~~~~~l~~~----i~-~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
-++..+... .+ -..+.++.++++|+||.|+-+...+.++..+.... +.++++..-|
T Consensus 75 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~--~k~~I~aalG 142 (307)
T cd01486 75 GIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAK--NKLVINAALG 142 (307)
T ss_pred EeeeeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHh--CCcEEEEEec
Confidence 000000000 00 01124566789999999998888888877766542 4466654433
No 269
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.14 E-value=0.018 Score=57.42 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=31.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|||+|.+|+.+|..|+++|. .+++++|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGv------g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGV------GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC------CeEEEEeCCc
Confidence 4689999999999999999999994 5899999874
No 270
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.07 E-value=0.029 Score=58.69 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=62.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCC---CccCCC-eEecC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPG---IKLGKN-VVADP 136 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~---~~l~~~-i~~~~ 136 (419)
..|+.|+|+|.+|...+..+...| ..|+++++++++ .+..++.|......+. ..-..+ .+..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lG-------A~V~v~d~~~~r------le~a~~lGa~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLG-------AIVRAFDTRPEV------KEQVQSMGAEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcCCeEEeccccccccccccceeecC
Confidence 369999999999999999999999 789999988765 3444444432100000 000000 11111
Q ss_pred -C--------HHHHhcCCCEEEEcc-----CcchHHHHHHHHhccCCCCcEEEEee
Q 014739 137 -D--------LENAVKDANMLVFVT-----PHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 -~--------~~ea~~~aDlVilav-----p~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+ ..+.++++|+||.|+ |... -+.++....++++.+||++.
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~--Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPK--LITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCe--eehHHHHhhCCCCCEEEEee
Confidence 1 223467899999999 4431 12233345567889998875
No 271
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.05 E-value=0.051 Score=49.83 Aligned_cols=35 Identities=9% Similarity=0.192 Sum_probs=31.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|+.+|. ..++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV------g~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI------GSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC------CEEEEEECCc
Confidence 3689999999999999999999995 6799999763
No 272
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.03 E-value=0.037 Score=55.40 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=60.1
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCC
Q 014739 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPD 137 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~ 137 (419)
.|+||+|+| .|.+|..+...|.+... .++..+.++++. .++.+ ..+-..... ..+++. . ..+.+ ..+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~------~el~~~~~s~~~-~G~~~-~~~~~~~~~-~~~~~~-~-~~~~v~~~~ 70 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPW------FEVTALAASERS-AGKTY-GEAVRWQLD-GPIPEE-V-ADMEVVSTD 70 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCC------ceEEEEEcChhh-cCCcc-ccccccccc-cccccc-c-cceEEEeCC
Confidence 368999998 79999999999987652 477777555432 01111 100000000 000000 0 11222 234
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+++ +.++|+||.|+|......+.+.+.. .+..+|+++.
T Consensus 71 ~~~-~~~~DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 71 PEA-VDDVDIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred HHH-hcCCCEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 443 5789999999999776666655543 4677887764
No 273
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.02 E-value=0.067 Score=50.78 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=86.3
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.||||+|.|+ |.||..+.+.+.+... .+ +-.++|........+. ..+. |.. .-++.++++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~------~~L~aa~~~~~~~~~g~d~-ge~~--g~~---------~~gv~v~~~ 62 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPD------LELVAAFDRPGSLSLGSDA-GELA--GLG---------LLGVPVTDD 62 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCC------ceEEEEEecCCccccccch-hhhc--ccc---------ccCceeecc
Confidence 3789999998 9999999999988752 34 3456666543111111 1111 110 012345566
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHh
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAV 217 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~ 217 (419)
+..+..++|++|=.+-+....+.++.... .+..+|.-|+|+..++ .+.+++.. ....++..|+++-
T Consensus 63 ~~~~~~~~DV~IDFT~P~~~~~~l~~~~~---~~~~lVIGTTGf~~e~------~~~l~~~a-~~v~vv~a~NfSi---- 128 (266)
T COG0289 63 LLLVKADADVLIDFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQ------LEKLREAA-EKVPVVIAPNFSL---- 128 (266)
T ss_pred hhhcccCCCEEEECCCchhhHHHHHHHHH---cCCCeEEECCCCCHHH------HHHHHHHH-hhCCEEEeccchH----
Confidence 66666789999988877766666655443 3556677777887531 12333321 2245666676643
Q ss_pred cCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014739 218 EKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 218 g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
|. ..-...+++..++|. ++.+++
T Consensus 129 Gv--------nll~~l~~~aak~l~--~~DiEI 151 (266)
T COG0289 129 GV--------NLLFKLAEQAAKVLD--DYDIEI 151 (266)
T ss_pred HH--------HHHHHHHHHHHHhcC--CCCEEe
Confidence 11 002345667778887 666655
No 274
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.01 E-value=0.018 Score=59.05 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=32.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..++|.|||.|.+|.++|..|.+.| ++|+++|+++..
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G-------~~V~g~D~~~~~ 38 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKG-------VYVIGVDKSLEA 38 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCC-------CEEEEEeCCccc
Confidence 4468999999999999999999999 899999987643
No 275
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.00 E-value=0.013 Score=57.54 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=48.6
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||.|+| +|.+|+.++..|.++| ++|++.+|+++. ...+...+.... ...+.-..+..+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-------~~V~~l~R~~~~------~~~l~~~~v~~v-------~~Dl~d~~~l~~ 60 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-------YQVRCLVRNLRK------ASFLKEWGAELV-------YGDLSLPETLPP 60 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-------CeEEEEEcChHH------hhhHhhcCCEEE-------ECCCCCHHHHHH
Confidence 6899999 5999999999999999 999999998644 233332221100 001111123455
Q ss_pred HhcCCCEEEEccCc
Q 014739 141 AVKDANMLVFVTPH 154 (419)
Q Consensus 141 a~~~aDlVilavp~ 154 (419)
++.++|+||-++..
T Consensus 61 al~g~d~Vi~~~~~ 74 (317)
T CHL00194 61 SFKGVTAIIDASTS 74 (317)
T ss_pred HHCCCCEEEECCCC
Confidence 67899999987653
No 276
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=95.99 E-value=0.0082 Score=54.26 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=47.2
Q ss_pred eEEEECcchHHHHH--HHHHHHcCCCCCCCC-ceEEEEecCCCCCC-cchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 63 KVTVVGSGNWGSVA--SKLIASNTLRLSSFH-DEVRMWVFEETLPS-GEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 63 kI~IIGaG~mG~~l--A~~La~~G~~~~~~~-~~V~l~~r~~~~~~-~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
||+|||+|+.-.+. -..+... ++++ .++.++|+++++++ -.++++.+.+.. ..+.++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~----~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~---------~~~~~v~~ttd~ 67 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT----EELSGSEIVLMDIDEERLEIVERLARRMVEEA---------GADLKVEATTDR 67 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT----TTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC---------TTSSEEEEESSH
T ss_pred CEEEECCchHhhHHHHHHHHhcC----ccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc---------CCCeEEEEeCCH
Confidence 79999999876553 2223332 2233 48999999986511 112223332211 112357789999
Q ss_pred HHHhcCCCEEEEccCcc
Q 014739 139 ENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~ 155 (419)
++++++||+||.++-.-
T Consensus 68 ~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 68 REALEGADFVINQIRVG 84 (183)
T ss_dssp HHHHTTESEEEE---TT
T ss_pred HHHhCCCCEEEEEeeec
Confidence 99999999999998763
No 277
>PRK08328 hypothetical protein; Provisional
Probab=95.99 E-value=0.037 Score=52.12 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|+..|. ..++++|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv------g~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV------GRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC------CEEEEEcCCc
Confidence 3589999999999999999999995 6899998765
No 278
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.86 E-value=0.024 Score=54.84 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=54.8
Q ss_pred cCeEEEECcchH-HHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGNW-GSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~m-G~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+|||.|.+ |.+++..|.+.| ..|+++... +.++.
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~-------atVt~~hs~----------------------------------t~~l~ 196 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAG-------ATVTICHSK----------------------------------TRDLA 196 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC-------CEEEEecCC----------------------------------CCCHH
Confidence 368999998887 999999999998 788876432 12344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.+++...+ +. ..++++++++|++.
T Consensus 197 ~~~~~ADIVV~avG~~~~---i~--~~~ik~gavVIDVG 230 (285)
T PRK14189 197 AHTRQADIVVAAVGKRNV---LT--ADMVKPGATVIDVG 230 (285)
T ss_pred HHhhhCCEEEEcCCCcCc---cC--HHHcCCCCEEEEcc
Confidence 567899999999996543 22 25678899999873
No 279
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.85 E-value=0.074 Score=48.83 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=31.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|+..|. .+++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV------g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI------DSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC------CEEEEEECCc
Confidence 3689999999999999999999996 7899999763
No 280
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.85 E-value=0.045 Score=54.59 Aligned_cols=100 Identities=19% Similarity=0.286 Sum_probs=57.1
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEE-ecCCCCCCcchHHHHHHhcCcCCcc--CCCCccCCCeEec-C
Q 014739 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMW-VFEETLPSGEKLTDVINRTNENVKY--LPGIKLGKNVVAD-P 136 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~-~r~~~~~~~~~l~~~i~~~g~~~~~--~~~~~l~~~i~~~-~ 136 (419)
|||+|+|+ |.||..++..|.+... .++..+ +++++. ++.+.+... ...+ .++ .+ ..+.+. .
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~------~~l~~v~~~~~~~--g~~~~~~~~----~~~~~~~~~-~~-~~~~~~~~ 66 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPY------FELAKVVASPRSA--GKRYGEAVK----WIEPGDMPE-YV-RDLPIVEP 66 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC------ceEEEEEEChhhc--CCcchhhcc----ccccCCCcc-cc-ceeEEEeC
Confidence 68999995 9999999999988752 466655 433221 111111100 0000 000 00 112222 2
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014739 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
++ +...++|+||+|+|.....++.+.+.. .+..+|+++.
T Consensus 67 ~~-~~~~~~DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg 105 (341)
T TIGR00978 67 EP-VASKDVDIVFSALPSEVAEEVEPKLAE---AGKPVFSNAS 105 (341)
T ss_pred CH-HHhccCCEEEEeCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 33 345789999999999877776655543 4777887764
No 281
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.84 E-value=0.035 Score=57.31 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=48.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++|.|+|+|.+|.++|..|++.| ++|++++++... ..++..+.+.+.+.. +.......
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G-------~~V~~~d~~~~~-~~~~~~~~l~~~~~~------------~~~~~~~~ 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG-------AKVILTDEKEED-QLKEALEELGELGIE------------LVLGEYPE 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCchH-HHHHHHHHHHhcCCE------------EEeCCcch
Confidence 3478999999999999999999999 999999987522 011112333332321 11112222
Q ss_pred HHhcCCCEEEEccCc
Q 014739 140 NAVKDANMLVFVTPH 154 (419)
Q Consensus 140 ea~~~aDlVilavp~ 154 (419)
+...++|+||.++-.
T Consensus 64 ~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 64 EFLEGVDLVVVSPGV 78 (450)
T ss_pred hHhhcCCEEEECCCC
Confidence 335679999998764
No 282
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.84 E-value=0.018 Score=62.20 Aligned_cols=92 Identities=12% Similarity=0.249 Sum_probs=61.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH--
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL-- 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~-- 138 (419)
..+|-|+|.|.+|..+++.|.++| ++++++|.++++ ++.+++.|.+. ++++ .+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-------~~vvvID~d~~~------v~~~~~~g~~v-~~GD---------at~~~~ 456 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG-------VKMTVLDHDPDH------IETLRKFGMKV-FYGD---------ATRMDL 456 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC-------CCEEEEECCHHH------HHHHHhcCCeE-EEEe---------CCCHHH
Confidence 468999999999999999999999 899999999876 77777655321 1111 1222
Q ss_pred -HH-HhcCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEE
Q 014739 139 -EN-AVKDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 139 -~e-a~~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs 176 (419)
++ -+.++|.+|+++.+.. ...++..++.. .|+..++.
T Consensus 457 L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~-~p~~~iia 496 (621)
T PRK03562 457 LESAGAAKAEVLINAIDDPQTSLQLVELVKEH-FPHLQIIA 496 (621)
T ss_pred HHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh-CCCCeEEE
Confidence 11 1458999999999844 33444444443 34444443
No 283
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.80 E-value=0.037 Score=53.93 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=58.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC---CCCCcchHHHHHHhcCcCCccCCCCcc-CCCeEec
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE---TLPSGEKLTDVINRTNENVKYLPGIKL-GKNVVAD 135 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~---~~~~~~~l~~~i~~~g~~~~~~~~~~l-~~~i~~~ 135 (419)
..+++.|+|+|.+|.+++..|++.|. .+|++++|++ ++ .+++++.+.+.+. .... ...+.-.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~------~~V~I~~R~~~~~~~--a~~l~~~l~~~~~------~~~~~~~d~~~~ 190 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGA------KEITIFNIKDDFYER--AEQTAEKIKQEVP------ECIVNVYDLNDT 190 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC------CEEEEEeCCchHHHH--HHHHHHHHhhcCC------CceeEEechhhh
Confidence 34579999999999999999999992 3599999986 33 2333444433211 0000 0000001
Q ss_pred CCHHHHhcCCCEEEEccCcchH---HHH-HHHHhccCCCCcEEEEee
Q 014739 136 PDLENAVKDANMLVFVTPHQFM---EGI-CKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~---~~v-l~~l~~~l~~~tiivs~~ 178 (419)
.+.++.+..+|+||-|||.-.. ... +.. ...+.++.+++++.
T Consensus 191 ~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~v 236 (289)
T PRK12548 191 EKLKAEIASSDILVNATLVGMKPNDGETNIKD-TSVFRKDLVVADTV 236 (289)
T ss_pred hHHHhhhccCCEEEEeCCCCCCCCCCCCCCCc-HHhcCCCCEEEEec
Confidence 1222345678999999986211 110 000 12355677787775
No 284
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.79 E-value=0.024 Score=54.94 Aligned_cols=98 Identities=16% Similarity=0.247 Sum_probs=63.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...++.|+|+|-.+.+.+..|++.|. .++++++|+.++ ++++++.+.+.+... ......+.+
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~------~~i~V~NRt~~r--a~~La~~~~~~~~~~----------~~~~~~~~~ 186 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA------KRITVVNRTRER--AEELADLFGELGAAV----------EAAALADLE 186 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC------CEEEEEeCCHHH--HHHHHHHhhhccccc----------ccccccccc
Confidence 34689999999999999999999994 689999999876 444444444322100 011122222
Q ss_pred HHhcCCCEEEEccCcchH----HHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFM----EGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~----~~vl~~l~~~l~~~tiivs~~ 178 (419)
. ..++|+||=|||.--- ...+. ...++++.++.++.
T Consensus 187 ~-~~~~dliINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~v 226 (283)
T COG0169 187 G-LEEADLLINATPVGMAGPEGDSPVP--AELLPKGAIVYDVV 226 (283)
T ss_pred c-ccccCEEEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence 2 2269999999997211 11222 34566788888875
No 285
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.77 E-value=0.11 Score=41.74 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=52.6
Q ss_pred cCeEEEECcchHHHHHHHHH-HHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 61 KSKVTVVGSGNWGSVASKLI-ASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~L-a~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..||.|+|+|.+|.+++..+ ...| +. +.++|.++++ . |... .++.+..+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g-------~~i~~~~dv~~~~------~------G~~i---------~gipV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRG-------FGIVAVFDVDPEK------I------GKEI---------GGIPVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHC-------ECEEEEEEECTTT------T------TSEE---------TTEEEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcC-------CCCEEEEEcCCCc------c------CcEE---------CCEEeeccH
Confidence 45899999999999987544 3445 44 5678888765 1 1100 124455555
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014739 139 ENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+++.+ +.|+.+++||+....++..++..
T Consensus 55 ~~l~~~~~i~iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 55 DELEEFIEIDIAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp HHHHHHCTTSEEEEES-HHHHHHHHHHHHH
T ss_pred HHhhhhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 55444 39999999999988888877665
No 286
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.76 E-value=0.036 Score=55.22 Aligned_cols=93 Identities=15% Similarity=0.235 Sum_probs=58.8
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCce---EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDE---VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~---V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+||+|||+ |.+|.-+.+.|.+... .+ +.++...... ++ .+.- .+..+ .+.. .+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~------f~v~~l~~~aS~~sa--Gk----~~~~--------~~~~l--~v~~-~~ 62 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETK------FNIAEVTLLSSKRSA--GK----TVQF--------KGREI--IIQE-AK 62 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCC------CCcccEEEEECcccC--CC----Ceee--------CCcce--EEEe-CC
Confidence 69999996 9999999999995331 45 5556544322 11 1111 11110 1222 24
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+++ ..++|++|+|+|.....++...+.. .|..||+++.-.
T Consensus 63 ~~~-~~~~Divf~a~~~~~s~~~~~~~~~---~G~~VID~Ss~f 102 (347)
T PRK06728 63 INS-FEGVDIAFFSAGGEVSRQFVNQAVS---SGAIVIDNTSEY 102 (347)
T ss_pred HHH-hcCCCEEEECCChHHHHHHHHHHHH---CCCEEEECchhh
Confidence 433 5789999999999877777666543 578999987543
No 287
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.74 E-value=0.024 Score=43.79 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=31.8
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
||.|||+|..|.-+|..|++.| .+|+++.+++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-------~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-------KEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-------SEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC-------cEEEEEeccchh
Confidence 6899999999999999999999 899999998765
No 288
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.73 E-value=0.035 Score=53.86 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=53.2
Q ss_pred cCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.|||.|. +|.+++..|.+.| ..|++++|.. +. ++
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~g-------atVtv~~~~t---------~~-------------------------L~ 197 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNAN-------ATVTICHSRT---------QN-------------------------LP 197 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCC-------CEEEEEeCCc---------hh-------------------------HH
Confidence 35899999997 9999999999998 7899988732 22 22
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++++|+||.|++... .+. ..+++++++++++.
T Consensus 198 ~~~~~aDIvI~AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 198 ELVKQADIIVGAVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred HHhccCCEEEEccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 33578999999996433 121 24467899998873
No 289
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.72 E-value=0.035 Score=55.33 Aligned_cols=91 Identities=12% Similarity=0.267 Sum_probs=57.5
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCHHH
Q 014739 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDLEN 140 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~~e 140 (419)
||+|+| .|..|..+...|.++++.. .++.++.+.++. + +.+...+. .+... .+.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~----~~l~~~as~~~~--g----~~~~~~~~------------~~~~~~~~~~- 57 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPI----DKLVLLASDRSA--G----RKVTFKGK------------ELEVNEAKIE- 57 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCCh----hhEEEEeccccC--C----CeeeeCCe------------eEEEEeCChH-
Confidence 689999 6999999999999987211 234455555432 1 11211110 11121 1233
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
.+.++|+||+|++.....+....+.. .|..||+++.
T Consensus 58 ~~~~~D~v~~a~g~~~s~~~a~~~~~---~G~~VID~ss 93 (339)
T TIGR01296 58 SFEGIDIALFSAGGSVSKEFAPKAAK---CGAIVIDNTS 93 (339)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHH---CCCEEEECCH
Confidence 35789999999999887777766543 4678888874
No 290
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.71 E-value=0.029 Score=53.14 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|++.|. ..++++|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv------g~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV------GNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC------CEEEEEeCCc
Confidence 3589999999999999999999995 6899999874
No 291
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.68 E-value=0.0096 Score=53.11 Aligned_cols=108 Identities=11% Similarity=0.060 Sum_probs=60.5
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC-CCccCC------
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP-GIKLGK------ 130 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~-~~~l~~------ 130 (419)
.....||.|+|+|..|..-+..|...| .+|+.++..++. .+.++..+....... ......
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lG-------a~v~~~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLG-------AEVVVPDERPER------LRQLESLGAYFIEVDYEDHLERKDFDKA 83 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT--------EEEEEESSHHH------HHHHHHTTTEESEETTTTTTTSB-CCHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCC-------CEEEeccCCHHH------HHhhhcccCceEEEcccccccccccchh
Confidence 344579999999999999999999999 899999987644 344444332111000 000000
Q ss_pred -----CeEecCCHHHHhcCCCEEEEccCcc--hHHHHH-HHHhccCCCCcEEEEee
Q 014739 131 -----NVVADPDLENAVKDANMLVFVTPHQ--FMEGIC-KRLVGKVNGDVEAISLI 178 (419)
Q Consensus 131 -----~i~~~~~~~ea~~~aDlVilavp~~--~~~~vl-~~l~~~l~~~tiivs~~ 178 (419)
.........+.+..+|+||.+.-.+ ....++ ++-...++++.+|++++
T Consensus 84 ~~~~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred hhhHHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 0001122345577899999866542 222222 33334467899999885
No 292
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.66 E-value=0.068 Score=52.93 Aligned_cols=81 Identities=22% Similarity=0.202 Sum_probs=52.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~~e 140 (419)
.+|+|+|+|.+|..-.+.....| .+|+.++|++++ .+..++.|.... +... .+..+
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-------a~Via~~~~~~K------~e~a~~lGAd~~----------i~~~~~~~~~ 224 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-------AEVIAITRSEEK------LELAKKLGADHV----------INSSDSDALE 224 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-------CeEEEEeCChHH------HHHHHHhCCcEE----------EEcCCchhhH
Confidence 58999999999977666665588 899999999876 344444443211 1111 11212
Q ss_pred Hhc-CCCEEEEccCcchHHHHHHHHh
Q 014739 141 AVK-DANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 141 a~~-~aDlVilavp~~~~~~vl~~l~ 165 (419)
.+. .+|+||.+++...+...++-+.
T Consensus 225 ~~~~~~d~ii~tv~~~~~~~~l~~l~ 250 (339)
T COG1064 225 AVKEIADAIIDTVGPATLEPSLKALR 250 (339)
T ss_pred HhHhhCcEEEECCChhhHHHHHHHHh
Confidence 222 3999999999666666665554
No 293
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.64 E-value=0.048 Score=53.10 Aligned_cols=99 Identities=11% Similarity=0.182 Sum_probs=57.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC-CCcchHHHHHHhcCcCCccCCCCccCCCeEecC----
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL-PSGEKLTDVINRTNENVKYLPGIKLGKNVVADP---- 136 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~-~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~---- 136 (419)
+++.|||+|..+.+++..|+..|. .+|++++|+++. ...+++++.+.... +..+...+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~------~~i~i~nRt~~~~~ka~~la~~~~~~~-----------~~~~~~~~~~~~ 187 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGL------KEIKLFNRRDEFFDKALAFAQRVNENT-----------DCVVTVTDLADQ 187 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC------CEEEEEeCCccHHHHHHHHHHHhhhcc-----------CceEEEechhhh
Confidence 589999999999999999999884 589999998641 01233333332210 00011111
Q ss_pred -CHHHHhcCCCEEEEccCcchH---HH-HHHHHhccCCCCcEEEEee
Q 014739 137 -DLENAVKDANMLVFVTPHQFM---EG-ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 -~~~ea~~~aDlVilavp~~~~---~~-vl~~l~~~l~~~tiivs~~ 178 (419)
.+++.+.++|+||-|+|.-.. .. .... ...++++.+++++.
T Consensus 188 ~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~v 233 (288)
T PRK12749 188 QAFAEALASADILTNGTKVGMKPLENESLVND-ISLLHPGLLVTECV 233 (288)
T ss_pred hhhhhhcccCCEEEECCCCCCCCCCCCCCCCc-HHHCCCCCEEEEec
Confidence 122345678999999986221 11 1100 12245677777765
No 294
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.59 E-value=0.03 Score=57.59 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=57.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCC---CCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLR---LSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~---~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.++||+|+|+|.||..++..|.++... .+..+.+ +.+++|+.++ .+.+. . .....+
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~------~~~~~-------------~-~~~~~~ 61 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK------DRGVD-------------L-PGILLT 61 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh------ccCCC-------------C-ccccee
Confidence 457999999999999999888654200 0000123 3466776543 11100 0 013456
Q ss_pred CCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014739 136 PDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 136 ~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
++.++.+. +.|+|+.+++.... ..+-+...+..|.-||+.-++.
T Consensus 62 ~d~~~ll~d~~iDvVve~tg~~~~--~~~~~~~aL~~GkhVVtaNK~~ 107 (426)
T PRK06349 62 TDPEELVNDPDIDIVVELMGGIEP--ARELILKALEAGKHVVTANKAL 107 (426)
T ss_pred CCHHHHhhCCCCCEEEECCCCchH--HHHHHHHHHHCCCeEEEcCHHH
Confidence 78877764 47999999876322 1222333445576777655543
No 295
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.59 E-value=0.11 Score=48.10 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=51.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+|.|||.|.+|..-+..|.+.| .+|++++.+... + .+.+.+.+ .+.. +.-.-+..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g-------a~VtVvsp~~~~----~-l~~l~~~~-~i~~---------~~~~~~~~ 65 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG-------AQLRVIAEELES----E-LTLLAEQG-GITW---------LARCFDAD 65 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC-------CEEEEEcCCCCH----H-HHHHHHcC-CEEE---------EeCCCCHH
Confidence 3468999999999999999999999 899999876432 1 23443332 1110 00011223
Q ss_pred HHhcCCCEEEEccCcchHHH
Q 014739 140 NAVKDANMLVFVTPHQFMEG 159 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~ 159 (419)
.+.++|+||.|+....+..
T Consensus 66 -dl~~~~lVi~at~d~~ln~ 84 (205)
T TIGR01470 66 -ILEGAFLVIAATDDEELNR 84 (205)
T ss_pred -HhCCcEEEEECCCCHHHHH
Confidence 3678999999998864444
No 296
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.52 E-value=0.075 Score=53.64 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=56.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc--------------chHHHHHHhcCcCCccCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG--------------EKLTDVINRTNENVKYLP 124 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~--------------~~l~~~i~~~g~~~~~~~ 124 (419)
.+|.|||+|.+|+.++..|+..|. .+++++|.+.-. +.+ +.+.+.+++. .|
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gv------g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~------np 109 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGV------GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI------QP 109 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC------CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH------CC
Confidence 589999999999999999999995 689999987311 000 1111222221 12
Q ss_pred CCccC-CCeEec-CCHHHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014739 125 GIKLG-KNVVAD-PDLENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 125 ~~~l~-~~i~~~-~~~~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+..+. ..-+.+ .+..+.+.++|+||-|+-....+..+.++..
T Consensus 110 ~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~ 153 (370)
T PRK05600 110 DIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE 153 (370)
T ss_pred CCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 22110 001111 2334557788998888888777776666543
No 297
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.51 E-value=0.052 Score=54.51 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=56.3
Q ss_pred cCeEEEECc-chHHHHHHHH-HHHcCCCCCCCCce---EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014739 61 KSKVTVVGS-GNWGSVASKL-IASNTLRLSSFHDE---VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~-La~~G~~~~~~~~~---V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
|++|+|||+ |.+|.-+... |.+.. .+ +.++..... +.....+.+... .+...
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~-------f~~~~l~~~ss~~s--------------g~~~~~f~g~~~--~v~~~ 57 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEND-------FDLIEPVFFSTSQA--------------GGAAPSFGGKEG--TLQDA 57 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCC-------CCcCcEEEecchhh--------------CCcccccCCCcc--eEEec
Confidence 579999996 9999999984 44444 34 555443211 111111111111 12222
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCC--cEEEEeecCc
Q 014739 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGD--VEAISLIKGM 181 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~--tiivs~~nGi 181 (419)
.+.++ ..++|++|+|+|+...+++...+.. .| .+||+++.-.
T Consensus 58 ~~~~~-~~~~Divf~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~f 101 (369)
T PRK06598 58 FDIDA-LKKLDIIITCQGGDYTNEVYPKLRA---AGWQGYWIDAASTL 101 (369)
T ss_pred CChhH-hcCCCEEEECCCHHHHHHHHHHHHh---CCCCeEEEECChHH
Confidence 33433 5789999999999877777766644 46 5688887533
No 298
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.51 E-value=0.085 Score=51.67 Aligned_cols=79 Identities=11% Similarity=0.170 Sum_probs=54.4
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.||+|+| .|..|.-+.+.|++.. ++.+.....+. . + ...+.++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP--------~~el~~l~s~~-------~-~--------------------~~~~~~~ 45 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD--------DIELLSIAPDR-------R-K--------------------DAAERAK 45 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC--------CeEEEEEeccc-------c-c--------------------CcCCHhH
Confidence 4899999 5999999999998875 44444333221 0 0 0112334
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
...++|++|+|+|.....++...+. ..+..||+++.
T Consensus 46 ~~~~~D~vFlalp~~~s~~~~~~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 46 LLNAADVAILCLPDDAAREAVSLVD---NPNTCIIDAST 81 (310)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHH---hCCCEEEECCh
Confidence 4578999999999987777766654 35788999875
No 299
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.50 E-value=0.063 Score=56.23 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=62.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccC-C-CCc-cCCC-eEe-c
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYL-P-GIK-LGKN-VVA-D 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~-~-~~~-l~~~-i~~-~ 135 (419)
..||.|+|+|.+|...+..+...| .+|+++|+++++ .+..++.|...... . +.. .... ++. +
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG-------A~V~a~D~~~~r------le~aeslGA~~v~i~~~e~~~~~~gya~~~s 231 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG-------AIVRAFDTRPEV------AEQVESMGAEFLELDFEEEGGSGDGYAKVMS 231 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcCCeEEEeccccccccccchhhhcc
Confidence 458999999999999999888889 789999998766 45555555331000 0 000 0000 011 1
Q ss_pred CCH--------HHHhcCCCEEEEccCcch---HHHHHHHHhccCCCCcEEEEee
Q 014739 136 PDL--------ENAVKDANMLVFVTPHQF---MEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 136 ~~~--------~ea~~~aDlVilavp~~~---~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.+. .+..+++|+||.|+-... -..+.++....++++..|+++.
T Consensus 232 ~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 232 EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 111 112357999999996422 1111244445566788887764
No 300
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.46 E-value=0.019 Score=58.37 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=31.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
|.+|.|||+|.+|.+.|..|+++| ++|++++++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g-------~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRG-------YQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CeEEEEeCCC
Confidence 459999999999999999999999 8999999875
No 301
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.44 E-value=0.019 Score=46.85 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=51.0
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+....+|.|||.|.+|..=+..|.+.| .+|++++.+. +..++ ... . ....
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-------A~v~vis~~~---------~~~~~-~i~------------~-~~~~ 53 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-------AKVTVISPEI---------EFSEG-LIQ------------L-IRRE 53 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-------BEEEEEESSE---------HHHHT-SCE------------E-EESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEECCch---------hhhhh-HHH------------H-Hhhh
Confidence 445678999999999999999999999 8999999763 11121 110 0 0112
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
.++.+.++|+||.|+.+..+.+.+.....
T Consensus 54 ~~~~l~~~~lV~~at~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 54 FEEDLDGADLVFAATDDPELNEAIYADAR 82 (103)
T ss_dssp -GGGCTTESEEEE-SS-HHHHHHHHHHHH
T ss_pred HHHHHhhheEEEecCCCHHHHHHHHHHHh
Confidence 22347789999999998776665544443
No 302
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.41 E-value=0.053 Score=53.75 Aligned_cols=39 Identities=5% Similarity=0.096 Sum_probs=33.9
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.....||.|||+|-||...+..|.++|. .+|++.+|+.+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~------~~i~v~nRt~~ 209 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGY------SRITFCSRQQL 209 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCC------CEEEEEcCCcc
Confidence 4556799999999999999999999984 57999999864
No 303
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.41 E-value=0.081 Score=53.12 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=57.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc--------------chHHHHHHhcCcCCccC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG--------------EKLTDVINRTNENVKYL 123 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~--------------~~l~~~i~~~g~~~~~~ 123 (419)
..||.|||+|.+|+.++..|+..|. ..++++|.+.-. +.+ +.+.+.+++. .
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~------n 95 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV------GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL------N 95 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH------C
Confidence 3589999999999999999999995 689999987411 000 1112222221 1
Q ss_pred CCCccCC-CeEec-CCHHHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014739 124 PGIKLGK-NVVAD-PDLENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 124 ~~~~l~~-~i~~~-~~~~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
|+..+.. ..+.+ .+..+.+.++|+||.|+-+...+.++.+...
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~ 140 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAA 140 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 2222100 00111 1223457889999999988776666665543
No 304
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.34 E-value=0.065 Score=50.92 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=31.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||+|||+|.+|+.++..|+..|. ..++++|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gv------g~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGV------GTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------CEEEEEcCCE
Confidence 4689999999999999999999995 6899998764
No 305
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.33 E-value=0.047 Score=49.06 Aligned_cols=83 Identities=23% Similarity=0.366 Sum_probs=54.6
Q ss_pred CCCcCeEEEECcchHHHHHHHH-HH-HcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe
Q 014739 58 VLHKSKVTVVGSGNWGSVASKL-IA-SNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~-La-~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
...+.++.|||+|++|.+++.. +. ++| .+ |-++|.+++. + |... +++ .++-
T Consensus 81 ~~~~tnviiVG~GnlG~All~Y~f~~~~~-------~~iv~~FDv~~~~---------V---G~~~---~~v----~V~~ 134 (211)
T COG2344 81 QDKTTNVIIVGVGNLGRALLNYNFSKKNG-------MKIVAAFDVDPDK---------V---GTKI---GDV----PVYD 134 (211)
T ss_pred CCcceeEEEEccChHHHHHhcCcchhhcC-------ceEEEEecCCHHH---------h---Cccc---CCe----eeec
Confidence 4456689999999999999876 34 455 44 4578877643 2 1111 111 1233
Q ss_pred cCCHHHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014739 135 DPDLENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 135 ~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
.++++..++ +.|+.|+|||+..-.++.+.|..
T Consensus 135 ~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~Lv~ 168 (211)
T COG2344 135 LDDLEKFVKKNDVEIAILTVPAEHAQEVADRLVK 168 (211)
T ss_pred hHHHHHHHHhcCccEEEEEccHHHHHHHHHHHHH
Confidence 455555555 78999999999887777777654
No 306
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.32 E-value=0.059 Score=54.51 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=30.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.||.|+|+|.+|+.++..|+..|. .+++++|++
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gv------g~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGV------GTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC------CeEEEEeCC
Confidence 589999999999999999999994 589999987
No 307
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.31 E-value=0.023 Score=52.78 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=49.2
Q ss_pred cCeEEEECcchHHHHHHHHHH--HcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIA--SNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La--~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..+|+|||+|.+|..++..+. ..| +++ -++++++++ .... ..+. .+....+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g-------~~ivgv~D~d~~~---------~~~~------i~g~----~v~~~~~ 137 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRG-------FKIVAAFDVDPEK---------IGTK------IGGI----PVYHIDE 137 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCC-------cEEEEEEECChhh---------cCCE------eCCe----EEcCHHH
Confidence 468999999999999988643 334 554 467776543 1110 0010 0112244
Q ss_pred HHHHhc--CCCEEEEccCcchHHHHHHHHh
Q 014739 138 LENAVK--DANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 138 ~~ea~~--~aDlVilavp~~~~~~vl~~l~ 165 (419)
+++.++ +.|.|++|+|.....++.+.+.
T Consensus 138 l~~li~~~~iD~ViIa~P~~~~~~i~~~l~ 167 (213)
T PRK05472 138 LEEVVKENDIEIGILTVPAEAAQEVADRLV 167 (213)
T ss_pred HHHHHHHCCCCEEEEeCCchhHHHHHHHHH
Confidence 555544 4999999999988777766554
No 308
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.31 E-value=0.035 Score=53.76 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014739 56 DGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.+.-..-||+|||.|.+|+--|+...--| -+|++.+++.++ ...+... + +.++.-.....
T Consensus 163 vpGV~~~kv~iiGGGvvgtnaAkiA~glg-------A~Vtild~n~~r------l~~ldd~------f-~~rv~~~~st~ 222 (371)
T COG0686 163 VPGVLPAKVVVLGGGVVGTNAAKIAIGLG-------ADVTILDLNIDR------LRQLDDL------F-GGRVHTLYSTP 222 (371)
T ss_pred CCCCCCccEEEECCccccchHHHHHhccC-------CeeEEEecCHHH------HhhhhHh------h-CceeEEEEcCH
Confidence 34445568999999999999888888777 899999998654 2222221 0 00100000112
Q ss_pred CCHHHHhcCCCEEEEccCc---chHHHHHHHHhccCCCCcEEEEee
Q 014739 136 PDLENAVKDANMLVFVTPH---QFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~---~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.+.++++..+|+||=+|=- ..=.-+.++..+.++++++||++.
T Consensus 223 ~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 223 SNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred HHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 3456778899999877632 333334456566678899999874
No 309
>PRK10206 putative oxidoreductase; Provisional
Probab=95.28 E-value=0.053 Score=54.15 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=48.2
Q ss_pred cCeEEEECcchHHHH-HHHHHHHc--CCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 61 KSKVTVVGSGNWGSV-ASKLIASN--TLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~-lA~~La~~--G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|.||||||+|.++.- .+..+... + .+| .+++++++. .+...+.+ .++.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~-------~~l~av~d~~~~~------~~~~~~~~-------------~~~~~~ 54 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDS-------WHVAHIFRRHAKP------EEQAPIYS-------------HIHFTS 54 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCC-------EEEEEEEcCChhH------HHHHHhcC-------------CCcccC
Confidence 469999999997753 34434332 3 555 467776543 21111111 124567
Q ss_pred CHHHHhc--CCCEEEEccCcchHHHHHHHHh
Q 014739 137 DLENAVK--DANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 137 ~~~ea~~--~aDlVilavp~~~~~~vl~~l~ 165 (419)
|.++.+. +.|+|++|+|.....++.....
T Consensus 55 ~~~ell~~~~iD~V~I~tp~~~H~~~~~~al 85 (344)
T PRK10206 55 DLDEVLNDPDVKLVVVCTHADSHFEYAKRAL 85 (344)
T ss_pred CHHHHhcCCCCCEEEEeCCchHHHHHHHHHH
Confidence 8888775 5799999999976666554443
No 310
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.26 E-value=0.095 Score=45.36 Aligned_cols=72 Identities=24% Similarity=0.261 Sum_probs=52.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.|+| ....|..++..|.+.| ..|++.+++. .+++
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~g-------atV~~~~~~t----------------------------------~~l~ 66 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDG-------ATVYSCDWKT----------------------------------IQLQ 66 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-------CEEEEeCCCC----------------------------------cCHH
Confidence 35788888 5788888888888887 7777776431 2345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.+++||+|+.++....+ ++ ..++++|+++++..
T Consensus 67 ~~v~~ADIVvsAtg~~~~---i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 67 SKVHDADVVVVGSPKPEK---VP--TEWIKPGATVINCS 100 (140)
T ss_pred HHHhhCCEEEEecCCCCc---cC--HHHcCCCCEEEEcC
Confidence 668899999999997643 21 34678999998654
No 311
>PRK06153 hypothetical protein; Provisional
Probab=95.25 E-value=0.038 Score=55.48 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=62.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCcc-------------hHHHHHHhcCcCCccCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSGE-------------KLTDVINRTNENVKYLPG 125 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~~-------------~l~~~i~~~g~~~~~~~~ 125 (419)
.||+|||+|..|+.++..|++.|. -+++++|.+.=. +.++ .-++.+++.-.. ..++
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GV------geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~--in~~ 248 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPV------REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSN--MRRG 248 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCC------CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHH--hCCe
Confidence 589999999999999999999995 689999876311 0000 001111110000 0011
Q ss_pred Cc-cCCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 126 IK-LGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 126 ~~-l~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+. .+. .++.+..+.+.++|+||.|+-....+.++.+.... .+..+|++-.|+.
T Consensus 249 I~~~~~--~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~ 302 (393)
T PRK06153 249 IVPHPE--YIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLE 302 (393)
T ss_pred EEEEee--cCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeecce
Confidence 11 111 11212223467899999999987777777655432 2556777655544
No 312
>PRK07236 hypothetical protein; Provisional
Probab=95.22 E-value=0.031 Score=56.47 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=34.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.|..++|.|||+|..|.++|..|+++| ++|+++.+.+.
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 40 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAG-------WDVDVFERSPT 40 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCC-------CCEEEEecCCC
Confidence 355679999999999999999999999 89999998764
No 313
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.19 E-value=0.028 Score=52.42 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=50.6
Q ss_pred EEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014739 64 VTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 64 I~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
|+|+|+ |.+|..++..|.+.+ ++|++..|++.. +..+.++..|.... .....-..++.+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~-------~~V~~l~R~~~~----~~~~~l~~~g~~vv-------~~d~~~~~~l~~al 62 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG-------FSVRALVRDPSS----DRAQQLQALGAEVV-------EADYDDPESLVAAL 62 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-------GCEEEEESSSHH----HHHHHHHHTTTEEE-------ES-TT-HHHHHHHH
T ss_pred CEEECCccHHHHHHHHHHHhCC-------CCcEEEEeccch----hhhhhhhcccceEe-------ecccCCHHHHHHHH
Confidence 789996 999999999999988 999999998732 22455665543211 00000112345578
Q ss_pred cCCCEEEEccCc
Q 014739 143 KDANMLVFVTPH 154 (419)
Q Consensus 143 ~~aDlVilavp~ 154 (419)
+++|.||++++.
T Consensus 63 ~g~d~v~~~~~~ 74 (233)
T PF05368_consen 63 KGVDAVFSVTPP 74 (233)
T ss_dssp TTCSEEEEESSC
T ss_pred cCCceEEeecCc
Confidence 899999999993
No 314
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.18 E-value=0.046 Score=54.34 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=57.8
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 59 LHKSKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
...++|.|+|+ |.||+.+++.|++. |. .++++++|++++ .+.+...... ... .
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv------~~lilv~R~~~r------l~~La~el~~------------~~i-~ 207 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGV------AELLLVARQQER------LQELQAELGG------------GKI-L 207 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCC------CEEEEEcCCHHH------HHHHHHHhcc------------ccH-H
Confidence 34478999998 89999999999854 42 589999998655 3444331100 011 2
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++++.++|+||.++.....- +++. ..++++.+++++.
T Consensus 208 ~l~~~l~~aDiVv~~ts~~~~~-~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 208 SLEEALPEADIVVWVASMPKGV-EIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred hHHHHHccCCEEEECCcCCcCC-cCCH--HHhCCCeEEEEec
Confidence 4556788899999888652210 0100 1224567777775
No 315
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.16 E-value=0.028 Score=55.70 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=57.4
Q ss_pred CeEEEECcchHHHHHHHHHHHc------CCCCCCCCce-EEEEecCCCCC-----CcchHHHHHHhcCcCCccCCCCccC
Q 014739 62 SKVTVVGSGNWGSVASKLIASN------TLRLSSFHDE-VRMWVFEETLP-----SGEKLTDVINRTNENVKYLPGIKLG 129 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~------G~~~~~~~~~-V~l~~r~~~~~-----~~~~l~~~i~~~g~~~~~~~~~~l~ 129 (419)
|||+|+|.|++|..++..|.+. |. ..+ |.+.+++.... +.+++.+...+ + ... . .+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~-----~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g-~l~---~--~~ 68 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNN-----GISVVSVSDSKLSYYNERGLDIGKIISYKEK-G-RLE---E--ID 68 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCC-----CeEEEEEEECCCcccCCcCCChHHHHHHHhc-C-ccc---c--CC
Confidence 5899999999999999999874 31 134 33455543221 11111111111 1 000 0 00
Q ss_pred CCeEecCCHHHHh-cCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 130 KNVVADPDLENAV-KDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 130 ~~i~~~~~~~ea~-~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.. ..+.++.+ .++|+||-|+++. .-......+.+.+..+.-||+..||..
T Consensus 69 --~~-~~~~~~ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgal 120 (326)
T PRK06392 69 --YE-KIKFDEIFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGL 120 (326)
T ss_pred --CC-cCCHHHHhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHH
Confidence 00 01344332 3689999999852 211234445556667888888887654
No 316
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.15 E-value=0.058 Score=52.40 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=49.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC--CH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP--DL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~--~~ 138 (419)
.+++.|+|+|-.|.+++..|++.|. .+|++++|+.++ ++.+++.++... +.. .+...+ +.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~------~~i~i~nR~~~k--a~~La~~~~~~~------~~~----~~~~~~~~~~ 188 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGV------QKLQVADLDTSR--AQALADVINNAV------GRE----AVVGVDARGI 188 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC------CEEEEEcCCHHH--HHHHHHHHhhcc------Ccc----eEEecCHhHH
Confidence 3689999999999999999999984 589999999876 333444333210 000 011111 11
Q ss_pred HHHhcCCCEEEEccCc
Q 014739 139 ENAVKDANMLVFVTPH 154 (419)
Q Consensus 139 ~ea~~~aDlVilavp~ 154 (419)
.+....+|+||=|+|.
T Consensus 189 ~~~~~~~divINaTp~ 204 (283)
T PRK14027 189 EDVIAAADGVVNATPM 204 (283)
T ss_pred HHHHhhcCEEEEcCCC
Confidence 2234578999999985
No 317
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.12 E-value=0.074 Score=51.44 Aligned_cols=72 Identities=18% Similarity=0.103 Sum_probs=54.4
Q ss_pred cCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.|||-|. +|.+++..|.+.| ..|++..+.. .+++
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~-------atVtv~hs~T----------------------------------~~l~ 197 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAG-------CTVTVCHRFT----------------------------------KNLR 197 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC-------CeEEEEECCC----------------------------------CCHH
Confidence 46899999888 9999999999988 7898886431 2345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.++....+ +. ..+++++++||++.
T Consensus 198 ~~~~~ADIvi~avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 198 HHVRNADLLVVAVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred HHHhhCCEEEEcCCCccc---cc--HHHcCCCcEEEEcc
Confidence 557889999999954332 11 15678899999874
No 318
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.05 E-value=0.033 Score=56.73 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=52.0
Q ss_pred CCcCeEEEECcchHHHHH--HHHHHHcCCCCCCCC-ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014739 59 LHKSKVTVVGSGNWGSVA--SKLIASNTLRLSSFH-DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~l--A~~La~~G~~~~~~~-~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
|.++||+|||+|+.+.+- ...|.+. ++++ .++.++|.++++ ++++..+.+.= ......+..+..+
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~----e~l~~~el~L~Did~~r---~~~i~~~~~~~-----v~~~g~~~kv~~t 68 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLART----EELPVRELALYDIDEER---LKIIAILAKKL-----VEEAGAPVKVEAT 68 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcC----ccCCcceEEEEeCCHHH---HHHHHHHHHHH-----HHhhCCCeEEEEe
Confidence 356799999999987653 2223222 3333 589999998765 22222222110 0001122346789
Q ss_pred CCHHHHhcCCCEEEEccCc
Q 014739 136 PDLENAVKDANMLVFVTPH 154 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~ 154 (419)
+|.++|+.+||+|+.+.-.
T Consensus 69 td~~eAl~gAdfVi~~~rv 87 (442)
T COG1486 69 TDRREALEGADFVITQIRV 87 (442)
T ss_pred cCHHHHhcCCCEEEEEEee
Confidence 9999999999999998765
No 319
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.04 E-value=0.052 Score=42.63 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEec
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVF 99 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r 99 (419)
...++++|+|+|.+|..++..|.+.+. .+|++|+|
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~------~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGG------KKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC------CEEEEEcC
Confidence 445789999999999999999999841 78999988
No 320
>PRK08223 hypothetical protein; Validated
Probab=95.04 E-value=0.18 Score=48.95 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|||+|.+|+..+..|+.+|. ..++++|.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV------G~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI------GKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC------CeEEEEeCCC
Confidence 3589999999999999999999996 6899999874
No 321
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.00 E-value=0.12 Score=51.60 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=56.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHc--------CCCCCCCCceE-EEEecCCCCC-----CcchHHHHHHhcCcCCccCCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASN--------TLRLSSFHDEV-RMWVFEETLP-----SGEKLTDVINRTNENVKYLPGI 126 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~--------G~~~~~~~~~V-~l~~r~~~~~-----~~~~l~~~i~~~g~~~~~~~~~ 126 (419)
.+||+|+|+|.||..++..|.+. |. +.+| .+++++.... +.+++ ....+.......+
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~-----~~~vvai~d~~~~~~~~~Gi~~~~~-~~~~~~~~~~~~~--- 72 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGL-----DLKVVAIADSSGSAIDPDGLDLELA-LKVKEETGKLADY--- 72 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC-----CEEEEEEEeCCCcccCcCCCCHHHH-HHHHhccCCcccC---
Confidence 36899999999999999999765 30 0343 3556543210 11111 1111111000000
Q ss_pred ccCCCeEecCCHHHHh--cCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecC
Q 014739 127 KLGKNVVADPDLENAV--KDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 127 ~l~~~i~~~~~~~ea~--~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+ ....+.+.++.+ .+.|+|+.|+|+.. .+...+.+...+..+.-||+..++
T Consensus 73 --~-~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~ 127 (341)
T PRK06270 73 --P-EGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKG 127 (341)
T ss_pred --c-cccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcH
Confidence 0 011234666665 36899999999743 222233334445557777766543
No 322
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.00 E-value=0.041 Score=47.01 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=30.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|++.|. .+++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv------~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV------GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT------SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC------CceeecCCcc
Confidence 3689999999999999999999994 5899999864
No 323
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.00 E-value=0.11 Score=46.12 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=58.7
Q ss_pred cccccchhhhhhhhcccCCCCCCcccccccCCCCCCCCCCCcCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEe
Q 014739 20 FPCFFHSLSLSSLFMAPAFEDNNSETLPSSFSSGSDDGVLHKSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWV 98 (419)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~ 98 (419)
.|| |......|++.-.++ ...++|.|||-+ .+|.+++..|.+.| ..|++..
T Consensus 16 ~Pc--Tp~aii~lL~~~~~~-------------------l~Gk~v~VvGrs~~VG~Pla~lL~~~~-------atVt~~h 67 (160)
T PF02882_consen 16 VPC--TPLAIIELLEYYGID-------------------LEGKKVVVVGRSNIVGKPLAMLLLNKG-------ATVTICH 67 (160)
T ss_dssp --H--HHHHHHHHHHHTT-S-------------------TTT-EEEEE-TTTTTHHHHHHHHHHTT--------EEEEE-
T ss_pred cCC--CHHHHHHHHHhcCCC-------------------CCCCEEEEECCcCCCChHHHHHHHhCC-------CeEEecc
Confidence 577 666666777654332 344689999976 69999999999998 7888875
Q ss_pred cCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 99 FEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 99 r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
... .++++.++.||+||.++....+ ++ ..+++++++||++.
T Consensus 68 ~~T----------------------------------~~l~~~~~~ADIVVsa~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 68 SKT----------------------------------KNLQEITRRADIVVSAVGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp TTS----------------------------------SSHHHHHTTSSEEEE-SSSTT----B---GGGS-TTEEEEE--
T ss_pred CCC----------------------------------CcccceeeeccEEeeeeccccc---cc--cccccCCcEEEecC
Confidence 432 2344557889999999987554 11 34678999999873
No 324
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.97 E-value=0.072 Score=57.77 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=32.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+||+|||+|..|.+.|..|++.| ++|+++++.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G-------~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG-------VQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC-------CcEEEEeCCCC
Confidence 3579999999999999999999999 89999998764
No 325
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.96 E-value=0.1 Score=54.26 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=32.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+||+|+|.|.-|.++|..|.+.| ++|+++|+++.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G-------~~V~~~D~~~~ 48 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG-------AKVTAFDKKSE 48 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC-------CEEEEECCCCC
Confidence 468999999999999999999999 99999998753
No 326
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.86 E-value=0.037 Score=56.29 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=31.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|+|||+|.+|.+.|..|+++| ++|++++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g-------~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG-------HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-------CEEEEEeCCCc
Confidence 68999999999999999999999 89999999753
No 327
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.81 E-value=0.042 Score=55.52 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=32.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.++|.|||+|..|.++|..|++.| ++|++++|.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g-------~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQG-------IKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCC-------CcEEEEeeCcc
Confidence 468999999999999999999999 89999999865
No 328
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.79 E-value=0.058 Score=51.00 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 57 GVLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 57 ~~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+..+|+|.|+|+ |.+|..++..|+++| ++|++..|+++.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g-------~~V~~~~R~~~~ 53 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKG-------FAVKAGVRDVDK 53 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCC-------CEEEEEecCHHH
Confidence 4566789999995 999999999999999 899999988643
No 329
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=94.78 E-value=0.14 Score=50.45 Aligned_cols=81 Identities=22% Similarity=0.248 Sum_probs=53.0
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..|+|.|-|+ |.+|+.+...|.++| |.|..-.|+++. ++-.+.+.+.......+ .-+...+.-..+.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-------Y~V~gtVR~~~~---~k~~~~L~~l~~a~~~l--~l~~aDL~d~~sf 72 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-------YTVRGTVRDPED---EKKTEHLRKLEGAKERL--KLFKADLLDEGSF 72 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-------CEEEEEEcCcch---hhhHHHHHhcccCcccc--eEEeccccccchH
Confidence 5689999995 999999999999999 999999999875 11122333321110000 0011223334566
Q ss_pred HHHhcCCCEEEEcc
Q 014739 139 ENAVKDANMLVFVT 152 (419)
Q Consensus 139 ~ea~~~aDlVilav 152 (419)
.+++.+||.||=+-
T Consensus 73 ~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 73 DKAIDGCDGVFHTA 86 (327)
T ss_pred HHHHhCCCEEEEeC
Confidence 77899999997544
No 330
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.77 E-value=0.11 Score=54.24 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=31.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..++|.|||+|..|..+|..|++.| ++|+++++++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G-------~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG-------ARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCc
Confidence 3468999999999999999999999 8999999664
No 331
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.71 E-value=0.11 Score=51.86 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=47.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcC-CCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNT-LRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G-~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..||+|||+ .||...+..+.+.. . .+ |-++++++++ ++++.+.- ++...++.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~------~eLvaV~d~~~er------A~~~A~~~-------------gi~~y~~~ 56 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPER------FELAGILAQGSER------SRALAHRL-------------GVPLYCEV 56 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCC------cEEEEEEcCCHHH------HHHHHHHh-------------CCCccCCH
Confidence 479999999 68999999888753 1 45 4567787765 45554421 12356788
Q ss_pred HHHhcCCCEEEEccCc
Q 014739 139 ENAVKDANMLVFVTPH 154 (419)
Q Consensus 139 ~ea~~~aDlVilavp~ 154 (419)
++.+.+.|++++++|+
T Consensus 57 eell~d~Di~~V~ipt 72 (343)
T TIGR01761 57 EELPDDIDIACVVVRS 72 (343)
T ss_pred HHHhcCCCEEEEEeCC
Confidence 8888878888888754
No 332
>PRK05868 hypothetical protein; Validated
Probab=94.64 E-value=0.045 Score=55.20 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=33.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|++|.|||+|..|.++|..|+++| ++|+++++.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G-------~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG-------YSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCCC
Confidence 679999999999999999999999 899999987653
No 333
>PTZ00188 adrenodoxin reductase; Provisional
Probab=94.59 E-value=0.1 Score=54.39 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=52.3
Q ss_pred CcCeEEEECcchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCCCC---------Ccc---hHHHHHHhcCcCCccCCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEETLP---------SGE---KLTDVINRTNENVKYLPGI 126 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~~~---------~~~---~l~~~i~~~g~~~~~~~~~ 126 (419)
...||+|||+|.-|.+.|..|+ +.| ++|++|++.+..- +.. .+.+.+...-. .+++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g-------~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~----~~~v 106 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHER-------VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFL----SPNY 106 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC-------CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHh----hCCe
Confidence 3468999999999999999765 567 8999999987530 111 11111111000 0122
Q ss_pred ccCCCeEecC--CHHHHhcCCCEEEEccCcch
Q 014739 127 KLGKNVVADP--DLENAVKDANMLVFVTPHQF 156 (419)
Q Consensus 127 ~l~~~i~~~~--~~~ea~~~aDlVilavp~~~ 156 (419)
.+..++.+-. +.++.....|.||+++-...
T Consensus 107 ~f~gnv~VG~Dvt~eeL~~~YDAVIlAtGA~~ 138 (506)
T PTZ00188 107 RFFGNVHVGVDLKMEELRNHYNCVIFCCGASE 138 (506)
T ss_pred EEEeeeEecCccCHHHHHhcCCEEEEEcCCCC
Confidence 2222344433 35665668999999998753
No 334
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.58 E-value=0.092 Score=50.79 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=54.1
Q ss_pred cCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.|||-| .+|.++|..|.+.| ..|++.... +.+++
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~g-------AtVtv~hs~----------------------------------t~~l~ 195 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAG-------ASVSVCHIL----------------------------------TKDLS 195 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCC-------CEEEEEeCC----------------------------------cHHHH
Confidence 3689999998 99999999999998 788877421 11234
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.|+....+ +. ..++++|++||++.
T Consensus 196 ~~~~~ADIvV~AvG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 196 FYTQNADIVCVGVGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred HHHHhCCEEEEecCCCCc---CC--HHHcCCCcEEEEee
Confidence 457889999999986543 11 23567899999874
No 335
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.58 E-value=0.25 Score=47.48 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=31.1
Q ss_pred eEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 63 KVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+|.|+|+ |.+|..++..|.+.| ++|++..|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-------~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-------VPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-------CcEEEEeCCCcc
Confidence 5889996 999999999999999 899999999865
No 336
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=94.57 E-value=0.28 Score=47.82 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=62.0
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..||.|.|. |.+|..+...|.+.| ++ |+.+++..-. +++. ++++..+.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g-------~~~v~pVnp~~~~-------~~v~----------------G~~~y~sv 57 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYG-------TNIVGGVTPGKGG-------TTVL----------------GLPVFNTV 57 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCC-------CCEEEEECCCCCC-------CeEe----------------CeeccCCH
Confidence 468999995 999999999999888 55 3344443102 1111 24566777
Q ss_pred HHHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 139 ENAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+|+-.. .|+.++++|...+.+++++.... .=..+|.++.|+.
T Consensus 58 ~dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~--gvk~avI~s~Gf~ 101 (291)
T PRK05678 58 AEAVEATGANASVIYVPPPFAADAILEAIDA--GIDLIVCITEGIP 101 (291)
T ss_pred HHHhhccCCCEEEEEcCHHHHHHHHHHHHHC--CCCEEEEECCCCC
Confidence 775554 79999999999999999887652 1234555666775
No 337
>PRK06753 hypothetical protein; Provisional
Probab=94.56 E-value=0.048 Score=54.60 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=32.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|.|||+|..|.++|..|+++| ++|+++.+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g-------~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG-------HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCc
Confidence 68999999999999999999999 89999998875
No 338
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.53 E-value=0.27 Score=48.41 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=59.4
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
++||||+| +|.+|..|...|.+.. |+.+ +.++...+.. +++ .+.-.+. ....+.. +.+.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-----f~~~~~~~~AS~rSa--G~~---~~~f~~~------~~~v~~~---~~~~ 61 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-----FPFEELVLLASARSA--GKK---YIEFGGK------SIGVPED---AADE 61 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-----CCcceEEEEeccccc--CCc---cccccCc------cccCccc---cccc
Confidence 57999998 5999999999999964 1233 5555544332 111 0111110 0111111 1222
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
. ...++|++|.|.+...-+++..++.. .|.+||+.+.-.
T Consensus 62 ~-~~~~~Divf~~ag~~~s~~~~p~~~~---~G~~VIdnsSa~ 100 (334)
T COG0136 62 F-VFSDVDIVFFAAGGSVSKEVEPKAAE---AGCVVIDNSSAF 100 (334)
T ss_pred c-ccccCCEEEEeCchHHHHHHHHHHHH---cCCEEEeCCccc
Confidence 2 25689999999998777777777664 478888876533
No 339
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.52 E-value=0.091 Score=56.06 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=30.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.||.|+|+|.+|+..|..|+..|+ .+++++|.+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GV------g~ItlVD~D 371 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGV------RHITFVDNG 371 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCC------CeEEEEcCC
Confidence 589999999999999999999996 678999875
No 340
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.45 E-value=0.13 Score=53.80 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=33.3
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
...++||.|+|+|..|.++|..|.+.| ++|+++|++..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G-------~~V~~~D~~~~ 49 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELG-------CDVVVADDNET 49 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCC-------CEEEEECCChH
Confidence 445678999999999999999999999 89999997653
No 341
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=94.44 E-value=0.36 Score=46.88 Aligned_cols=91 Identities=19% Similarity=0.244 Sum_probs=63.5
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..||.|.| .|.+|..+-..+...| .+ .++..++.+ . .+++. ++++..+.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g-------~~-~v~~V~p~~--~---~~~v~----------------G~~~y~sv~ 56 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYG-------TN-IVGGVTPGK--G---GTTVL----------------GLPVFDSVK 56 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCC-------CC-EEEEECCCC--C---cceec----------------CeeccCCHH
Confidence 35899999 6999999999999888 66 555555541 0 01111 245667777
Q ss_pred HHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 140 NAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
|+... .|++++++|...+.+++++.... .=..+|.++.|+.
T Consensus 57 dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~--Gvk~avIis~Gf~ 99 (286)
T TIGR01019 57 EAVEETGANASVIFVPAPFAADAIFEAIDA--GIELIVCITEGIP 99 (286)
T ss_pred HHhhccCCCEEEEecCHHHHHHHHHHHHHC--CCCEEEEECCCCC
Confidence 75444 69999999999999999887652 1134555667774
No 342
>PRK06847 hypothetical protein; Provisional
Probab=94.43 E-value=0.06 Score=53.91 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=32.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+++|.|||+|.-|.++|..|++.| ++|+++.+.++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g-------~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAG-------IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCC-------CCEEEEecCCC
Confidence 3578999999999999999999999 89999998764
No 343
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.41 E-value=0.31 Score=40.39 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=53.5
Q ss_pred CcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhc--C
Q 014739 68 GSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVK--D 144 (419)
Q Consensus 68 GaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~--~ 144 (419)
|.|.||..++..|.+.... .+.+| .+++|+ ...+.. ...... +...++++++.+. +
T Consensus 1 G~G~VG~~l~~~l~~~~~~---~~~~v~~v~~~~-~~~~~~-~~~~~~----------------~~~~~~~~~~~~~~~~ 59 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER---IDLEVVGVADRS-MLISKD-WAASFP----------------DEAFTTDLEELIDDPD 59 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH---CEEEEEEEEESS-EEEETT-HHHHHT----------------HSCEESSHHHHHTHTT
T ss_pred CCCHHHHHHHHHHHhCccc---CCEEEEEEEECC-chhhhh-hhhhcc----------------cccccCCHHHHhcCcC
Confidence 8999999999999887300 00454 456666 211111 011111 1235678887777 8
Q ss_pred CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 145 ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 145 aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.|+||-|+.+..+.+.+... +..|.-||+..+|..
T Consensus 60 ~dvvVE~t~~~~~~~~~~~~---L~~G~~VVt~nk~al 94 (117)
T PF03447_consen 60 IDVVVECTSSEAVAEYYEKA---LERGKHVVTANKGAL 94 (117)
T ss_dssp -SEEEE-SSCHHHHHHHHHH---HHTTCEEEES-HHHH
T ss_pred CCEEEECCCchHHHHHHHHH---HHCCCeEEEECHHHh
Confidence 99999998887777665544 446788888887654
No 344
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.34 E-value=0.14 Score=46.55 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=58.2
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.++|..|.+.| ..|++.+.+.-. .... +...++. +.+. -....++.
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~-------AtVti~~~~~~~--------~~~~-~~~~~hs---~t~~-~~~~~~l~ 121 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDG-------ARVYSVDINGIQ--------VFTR-GESIRHE---KHHV-TDEEAMTL 121 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC-------CEEEEEecCccc--------cccc-ccccccc---cccc-cchhhHHH
Confidence 46899999 6789999999999998 899988754321 0010 0000000 0000 00011255
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.+++...+. +. ..++++|++||++.
T Consensus 122 ~~~~~ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVG 156 (197)
T cd01079 122 DCLSQSDVVITGVPSPNYK--VP--TELLKDGAICINFA 156 (197)
T ss_pred HHhhhCCEEEEccCCCCCc--cC--HHHcCCCcEEEEcC
Confidence 6788999999999975541 10 24567899999863
No 345
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.26 E-value=0.17 Score=53.09 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=46.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.++|.|+|+|..|.+.+..|.+.| .+|+++|+++.. .+.+++.|.. +.......+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G-------~~v~~~D~~~~~------~~~l~~~g~~------------~~~~~~~~~ 66 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFG-------ARPTVCDDDPDA------LRPHAERGVA------------TVSTSDAVQ 66 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC-------CEEEEEcCCHHH------HHHHHhCCCE------------EEcCcchHh
Confidence 358999999999999999999999 899999966432 2334443321 111112223
Q ss_pred HhcCCCEEEEccC
Q 014739 141 AVKDANMLVFVTP 153 (419)
Q Consensus 141 a~~~aDlVilavp 153 (419)
.+.++|+||.+.-
T Consensus 67 ~l~~~D~VV~SpG 79 (488)
T PRK03369 67 QIADYALVVTSPG 79 (488)
T ss_pred HhhcCCEEEECCC
Confidence 4667899888764
No 346
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.26 E-value=0.065 Score=54.19 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=32.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..+.+|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G-------~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAG-------LSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC-------CEEEEEeCCC
Confidence 44568999999999999999999999 8999999865
No 347
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.24 E-value=0.13 Score=55.83 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=32.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+||+|||+|..|.+.|..|++.| ++|+++++.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G-------~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNG-------VAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CeEEEEecCCC
Confidence 3469999999999999999999999 89999998654
No 348
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.18 E-value=0.092 Score=39.38 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.6
Q ss_pred EECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 66 VVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 66 IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|||+|.-|.+.|..|+++| ++|+++++.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCC-------CcEEEEecCccc
Confidence 8999999999999999999 899999987653
No 349
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=94.18 E-value=0.18 Score=49.45 Aligned_cols=141 Identities=16% Similarity=0.064 Sum_probs=85.2
Q ss_pred ccchhcccccccchhhhhhhhcccCCCCCCcc-cccccCCCCCCCCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCC
Q 014739 13 QPFIRKRFPCFFHSLSLSSLFMAPAFEDNNSE-TLPSSFSSGSDDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFH 91 (419)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~ 91 (419)
-|+-..|--|-++-+++.||-...+=- .++ ..---++....-|.-.-++++|+|.|.+|+-.|.++..-|
T Consensus 99 ~P~~Ns~saAEltigli~SLaR~i~~A--~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~g------- 169 (406)
T KOG0068|consen 99 TPTANSRSAAELTIGLILSLARQIGQA--SASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMG------- 169 (406)
T ss_pred CCCCChHHHHHHHHHHHHHHhhhcchh--heeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHhcC-------
Confidence 455555556667777777664322110 011 0000111112223444578999999999999999998888
Q ss_pred ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCCCEEEEccCc-chHHHHH-HHHhccCC
Q 014739 92 DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVN 169 (419)
Q Consensus 92 ~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~ 169 (419)
-.|..++.=.. .+.....| ++. .+.+|++..||+|-+=+|- .+.+.++ ++....++
T Consensus 170 m~vI~~dpi~~-------~~~~~a~g--------------vq~-vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mK 227 (406)
T KOG0068|consen 170 MHVIGYDPITP-------MALAEAFG--------------VQL-VSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMK 227 (406)
T ss_pred ceEEeecCCCc-------hHHHHhcc--------------cee-eeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhh
Confidence 55555553221 13333333 233 3567889999999999985 6677666 23344568
Q ss_pred CCcEEEEeecCcccC
Q 014739 170 GDVEAISLIKGMEVK 184 (419)
Q Consensus 170 ~~tiivs~~nGi~~~ 184 (419)
+|..||..+.|-..+
T Consensus 228 kGVriIN~aRGGvVD 242 (406)
T KOG0068|consen 228 KGVRIINVARGGVVD 242 (406)
T ss_pred CCcEEEEecCCceec
Confidence 899999998776553
No 350
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.17 E-value=0.21 Score=51.51 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=31.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.++|.|+|.|.+|.+.|..|++.| ++|++++++..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G-------~~V~~~d~~~~ 39 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG-------ANVTVNDGKPF 39 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC-------CEEEEEcCCCc
Confidence 368999999999999999999999 89999997653
No 351
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.16 E-value=0.11 Score=50.28 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=55.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
.++.|+|+|..+.+++..|++.|. .+|++++|++++ .+.+.+.- . .....+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~------~~i~i~nR~~~~------a~~la~~~-~------------~~~~~~~~-- 175 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF------TDGTIVARNEKT------GKALAELY-G------------YEWRPDLG-- 175 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC------CEEEEEeCCHHH------HHHHHHHh-C------------Ccchhhcc--
Confidence 489999999999999999999983 479999999876 44444311 0 00111111
Q ss_pred hcCCCEEEEccCcchH--HHH-HHHH-hccCCCCcEEEEee
Q 014739 142 VKDANMLVFVTPHQFM--EGI-CKRL-VGKVNGDVEAISLI 178 (419)
Q Consensus 142 ~~~aDlVilavp~~~~--~~v-l~~l-~~~l~~~tiivs~~ 178 (419)
...+|+||=|+|.-.. .+. ...+ ...++++.+++++.
T Consensus 176 ~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~v 216 (272)
T PRK12550 176 GIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVV 216 (272)
T ss_pred cccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEee
Confidence 2458999999985211 000 0001 12355667777764
No 352
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.13 E-value=0.24 Score=48.82 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=60.0
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+...-|+||+|+|.|+.-+++.|...- +=+|.|. +.+|+.++ +.+..+++ .+| +.++..
T Consensus 3 ~s~~ir~Gi~g~g~ia~~f~~al~~~p----~s~~~Ivava~~s~~~------A~~fAq~~---------~~~-~~k~y~ 62 (351)
T KOG2741|consen 3 DSATIRWGIVGAGRIARDFVRALHTLP----ESNHQIVAVADPSLER------AKEFAQRH---------NIP-NPKAYG 62 (351)
T ss_pred CCceeEEEEeehhHHHHHHHHHhccCc----ccCcEEEEEecccHHH------HHHHHHhc---------CCC-CCcccc
Confidence 445569999999999999999886542 1126665 55665544 44444432 122 346778
Q ss_pred CHHHHhcC--CCEEEEccCcchHHHHHHHHhc
Q 014739 137 DLENAVKD--ANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 137 ~~~ea~~~--aDlVilavp~~~~~~vl~~l~~ 166 (419)
+.++.+++ +|+|.+++|..+-.+++..++.
T Consensus 63 syEeLakd~~vDvVyi~~~~~qH~evv~l~l~ 94 (351)
T KOG2741|consen 63 SYEELAKDPEVDVVYISTPNPQHYEVVMLALN 94 (351)
T ss_pred CHHHHhcCCCcCEEEeCCCCccHHHHHHHHHH
Confidence 88887765 5999999998777777655444
No 353
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.12 E-value=0.16 Score=51.79 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=56.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc--------------chHHHHHHhcCcCCccC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG--------------EKLTDVINRTNENVKYL 123 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~--------------~~l~~~i~~~g~~~~~~ 123 (419)
..||.|||+|.+|+.++..|+.+|. ..++++|.+.-. +.+ +.+.+.+++. .
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gv------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~------n 109 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGV------GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI------N 109 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC------CeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh------C
Confidence 3589999999999999999999995 578999876411 000 0111112211 1
Q ss_pred CCCcc---CCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014739 124 PGIKL---GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 124 ~~~~l---~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
|...+ +..+. ..+..+.+.++|+||-|+-+...+..+.++..
T Consensus 110 p~v~i~~~~~~i~-~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~ 154 (392)
T PRK07878 110 PLVNVRLHEFRLD-PSNAVELFSQYDLILDGTDNFATRYLVNDAAV 154 (392)
T ss_pred CCcEEEEEeccCC-hhHHHHHHhcCCEEEECCCCHHHHHHHHHHHH
Confidence 12211 11111 11233457889999999887777766766543
No 354
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.04 E-value=0.15 Score=53.14 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=31.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
...+|+|||+|..|...|..|++.| ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G-------~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG-------VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-------CeEEEEecCC
Confidence 3468999999999999999999999 8999999875
No 355
>PRK07411 hypothetical protein; Validated
Probab=94.02 E-value=0.16 Score=51.70 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=57.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc--------------chHHHHHHhcCcCCccC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG--------------EKLTDVINRTNENVKYL 123 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~--------------~~l~~~i~~~g~~~~~~ 123 (419)
..||.|||+|.+|+.++..|+.+|. ..++++|.+.-. +.+ +.+.+.+++. .
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv------g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~------n 105 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI------GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEI------N 105 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC------CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHH------C
Confidence 3589999999999999999999995 678999876311 001 1111222211 1
Q ss_pred CCCccC-CCeEec-CCHHHHhcCCCEEEEccCcchHHHHHHHHh
Q 014739 124 PGIKLG-KNVVAD-PDLENAVKDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 124 ~~~~l~-~~i~~~-~~~~ea~~~aDlVilavp~~~~~~vl~~l~ 165 (419)
|+.++. .....+ .+..+.+.++|+||.|+-+...+..+.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 222110 000111 123345788999999998877777776654
No 356
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.02 E-value=0.18 Score=52.36 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=32.9
Q ss_pred CCCcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 58 VLHKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+.+.++|.|+|.|..|.+ +|+.|.+.| ++|+++|.+..
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G-------~~V~~~D~~~~ 42 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLG-------YKVSGSDLKES 42 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCC-------CeEEEECCCCC
Confidence 344578999999999999 799999999 99999997653
No 357
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.00 E-value=0.084 Score=51.73 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=30.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+|.|||+|.-|.++|..|+++| ++|+++++.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G-------~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG-------IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT-------CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcc-------cccccchhcccc
Confidence 47999999999999999999999 999999998654
No 358
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.89 E-value=0.25 Score=48.62 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=30.0
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
||.|||+|.+|+.++..|+..|. ..++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv------g~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF------GEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC------CeEEEEcCCC
Confidence 68999999999999999999995 6899999764
No 359
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.85 E-value=0.2 Score=46.71 Aligned_cols=37 Identities=24% Similarity=0.134 Sum_probs=30.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
+..++|+|.|.|++|..+|..|.+.|. ..|.+.|.+.
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~------~vV~vsD~~g 57 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGG------KVLAVSDPDG 57 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC------EEEEEEcCCC
Confidence 445799999999999999999999982 3566777654
No 360
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.80 E-value=0.12 Score=52.48 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=33.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
....++|.|||+|.-|.++|..|++.| ++|+++++.+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSG-------LRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCC-------CEEEEEecCCc
Confidence 444578999999999999999999999 99999998764
No 361
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.79 E-value=0.084 Score=53.32 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=31.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
++.+|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G-------~~v~l~E~~~ 36 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQG-------RSVAVIEGGE 36 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC-------CcEEEEcCCC
Confidence 3458999999999999999999999 9999999764
No 362
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.76 E-value=0.078 Score=53.44 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=31.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHc---CCCCCCCCceEEEEecC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASN---TLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~---G~~~~~~~~~V~l~~r~ 100 (419)
|.+++|.|||+|..|.++|..|+++ | ++|+++++.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G-------~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGG-------LPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCC-------CEEEEEeCC
Confidence 4567899999999999999999998 9 899999994
No 363
>PRK07588 hypothetical protein; Provisional
Probab=93.76 E-value=0.085 Score=53.30 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=31.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|.|||+|..|.++|..|++.| ++|+++.+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG-------HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC-------CceEEEeCCCC
Confidence 58999999999999999999999 89999998764
No 364
>PRK07538 hypothetical protein; Provisional
Probab=93.75 E-value=0.084 Score=53.87 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=31.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|.|||+|..|.++|..|+++| ++|+++.+.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG-------IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-------CcEEEEEcCCc
Confidence 68999999999999999999999 89999998764
No 365
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.75 E-value=0.52 Score=45.80 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.+|..|+.+|. ..++++|.+.
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV------g~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV------KSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC------CeEEEEcCCc
Confidence 3589999999999999999999995 6899999764
No 366
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.72 E-value=0.27 Score=51.67 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=31.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..++|.|+|.|..|.++|..|.+.| ++|+++|...
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G-------~~v~~~D~~~ 40 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHG-------ARLRVADTRE 40 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCC-------CEEEEEcCCC
Confidence 3468999999999999999999999 8999999754
No 367
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.66 E-value=0.31 Score=45.16 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=57.8
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+....++|.|||.|.+|..=+..|.+.| .+|+++..+.. +++ ..+.+.+.... +.-.-
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~g-------a~v~Vvs~~~~----~el-~~~~~~~~i~~----------~~~~~ 65 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAG-------ADVTVVSPEFE----PEL-KALIEEGKIKW----------IEREF 65 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcC-------CEEEEEcCCcc----HHH-HHHHHhcCcch----------hhccc
Confidence 3445579999999999999999999999 89999987652 122 23333221000 01112
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014739 137 DLENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
++++ ..++++||.||.+..+.+.+.+.+.
T Consensus 66 ~~~~-~~~~~lviaAt~d~~ln~~i~~~a~ 94 (210)
T COG1648 66 DAED-LDDAFLVIAATDDEELNERIAKAAR 94 (210)
T ss_pred Chhh-hcCceEEEEeCCCHHHHHHHHHHHH
Confidence 3333 4569999999999877776655543
No 368
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.63 E-value=0.11 Score=51.60 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=30.7
Q ss_pred cCeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEEecCCC
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~ 102 (419)
||||.|.|+ |.+|+.++..|.++ | ++|+.++|+.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-------~~V~~~~r~~~ 37 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-------WEVYGMDMQTD 37 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-------CeEEEEeCcHH
Confidence 589999996 99999999999886 6 89999998653
No 369
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.62 E-value=0.11 Score=52.21 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+.+++|+|||+|.+|.+.|..|++.| .+|+++++.+.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G-------~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERG-------ADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcC-------CEEEEEecCcc
Confidence 34678999999999999999999999 89999997653
No 370
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.59 E-value=0.097 Score=52.76 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+|.|||+|..|.++|..|+++| ++|+++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G-------~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAG-------ASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCC-------CeEEEEeCCCC
Confidence 47999999999999999999999 89999998754
No 371
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.58 E-value=0.2 Score=52.00 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=31.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+||.|||.|..|.+.|..|.+.| ++|+++|+.+.
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G-------~~v~~~D~~~~ 43 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGG-------AEVIAWDDNPA 43 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCC-------CEEEEECCChh
Confidence 3468999999999999999999999 89999997643
No 372
>PLN02427 UDP-apiose/xylose synthase
Probab=93.57 E-value=0.15 Score=51.56 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=31.6
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCC
Q 014739 60 HKSKVTVVG-SGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~ 103 (419)
..|||.|.| +|-+|+.++..|.++ | ++|.+++|+.+.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g-------~~V~~l~r~~~~ 51 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETP-------HKVLALDVYNDK 51 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCC-------CEEEEEecCchh
Confidence 347999999 599999999999997 6 899999987644
No 373
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.57 E-value=0.23 Score=48.15 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=53.3
Q ss_pred cCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-+++.|||-|. +|.++|..|.+.| ..|++.... |.+++
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~-------atVtv~hs~----------------------------------T~~l~ 202 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRN-------ATVSVCHVF----------------------------------TDDLK 202 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC-------CEEEEEecc----------------------------------CCCHH
Confidence 36899999888 9999999999988 788887632 12344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+..++||+||.++.-..+ + -..++++|++||++.
T Consensus 203 ~~~~~ADIvv~AvG~p~~---i--~~~~vk~gavVIDvG 236 (287)
T PRK14176 203 KYTLDADILVVATGVKHL---I--KADMVKEGAVIFDVG 236 (287)
T ss_pred HHHhhCCEEEEccCCccc---c--CHHHcCCCcEEEEec
Confidence 556789999997764322 1 123678899999873
No 374
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=93.54 E-value=0.17 Score=52.57 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+.|.|||+|.-|++.|..|+++| ++|.++++..+
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G-------~~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGG-------IETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCC
Confidence 58999999999999999999999 89999998753
No 375
>PRK08013 oxidoreductase; Provisional
Probab=93.52 E-value=0.1 Score=53.07 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=32.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+|.|||+|..|.++|..|++.| ++|+++++.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G-------~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSG-------LRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCC-------CEEEEEeCCCC
Confidence 357999999999999999999999 89999998765
No 376
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.51 E-value=0.19 Score=50.02 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=57.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHc--------CCCCCCCCceEE-EEecCCCC-----CCcchHHHHHHhcCcCCccCCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASN--------TLRLSSFHDEVR-MWVFEETL-----PSGEKLTDVINRTNENVKYLPGI 126 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~--------G~~~~~~~~~V~-l~~r~~~~-----~~~~~l~~~i~~~g~~~~~~~~~ 126 (419)
+++|+|+|.|.+|+.++..|.++ |. +..|. +.+++... .+.+++.+..++.+ .+..++.
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~-----~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~-~~~~~~~- 74 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGV-----ELKVVSITDTSGTIWLPEDIDLREAKEVKENFG-KLSNWGN- 74 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC-----CEEEEEEEeCCccccCCCCCChHHHHHhhhccC-chhhccc-
Confidence 37999999999999999998873 41 02332 33443221 11112211111111 0000000
Q ss_pred ccCCCeEecCCHHHHh--cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014739 127 KLGKNVVADPDLENAV--KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 127 ~l~~~i~~~~~~~ea~--~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+... ...++++.+ .++|+||-++......+...+ .+..+.-||+..||.
T Consensus 75 --~~~~-~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~---al~~G~~VVtanK~~ 125 (336)
T PRK08374 75 --DYEV-YNFSPEEIVEEIDADIVVDVTNDKNAHEWHLE---ALKEGKSVVTSNKPP 125 (336)
T ss_pred --cccc-cCCCHHHHHhcCCCCEEEECCCcHHHHHHHHH---HHhhCCcEEECCHHH
Confidence 0000 012455555 479999999987655555444 345677888888764
No 377
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.50 E-value=0.1 Score=52.19 Aligned_cols=33 Identities=27% Similarity=0.144 Sum_probs=30.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..|.|||+|.+|.+.|..|++.| ++|++++++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g-------~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRG-------LRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCC-------CeEEEEeccc
Confidence 46999999999999999999999 8999999874
No 378
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.46 E-value=0.68 Score=43.27 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=56.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++|.|||.|.++..=+..|.+.| .+|+++..+-.. + +..+.+.+. +.. ++-.-++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~g-------A~VtVVap~i~~----e-l~~l~~~~~-------i~~---~~r~~~~~ 81 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKG-------CYVYILSKKFSK----E-FLDLKKYGN-------LKL---IKGNYDKE 81 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEcCCCCH----H-HHHHHhCCC-------EEE---EeCCCChH
Confidence 3468999999999999999999999 899999865421 1 223333221 110 00011233
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhc
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+ +.++++||.||.+..+...+...+.
T Consensus 82 d-l~g~~LViaATdD~~vN~~I~~~a~ 107 (223)
T PRK05562 82 F-IKDKHLIVIATDDEKLNNKIRKHCD 107 (223)
T ss_pred H-hCCCcEEEECCCCHHHHHHHHHHHH
Confidence 3 6789999999998877776655554
No 379
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.42 E-value=0.21 Score=48.39 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=53.6
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~~-------aTVtichs~----------------------------------T~~l~ 193 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLRED-------ATVTLAHSK----------------------------------TQDLP 193 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 6889999999999888 788876532 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..++||+||.++....+-. ..++++|++||++
T Consensus 194 ~~~~~ADIvIsAvGkp~~i~-----~~~vk~GavVIDV 226 (287)
T PRK14173 194 AVTRRADVLVVAVGRPHLIT-----PEMVRPGAVVVDV 226 (287)
T ss_pred HHHhhCCEEEEecCCcCccC-----HHHcCCCCEEEEc
Confidence 56788999999998654311 3457889999986
No 380
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.32 E-value=0.23 Score=48.01 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=53.5
Q ss_pred cCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.|||-+ .+|.++|..|.+.| ..|++.... |.+++
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~~-------AtVti~hs~----------------------------------T~~l~ 195 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNAN-------ATVDICHIF----------------------------------TKDLK 195 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CcCHH
Confidence 3689999977 99999999999988 788865321 12344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.++.-..+ +. ..++++|++||++.
T Consensus 196 ~~~~~ADIvV~AvGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 196 AHTKKADIVIVGVGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred HHHhhCCEEEEecCcccc---cC--HHHcCCCcEEEEee
Confidence 567899999999986443 11 34678899999873
No 381
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.31 E-value=0.22 Score=48.54 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=53.2
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc--------------chHHHHHHhcCcCCccCCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG--------------EKLTDVINRTNENVKYLPG 125 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~--------------~~l~~~i~~~g~~~~~~~~ 125 (419)
||.|||+|.+|+.++..|+..|. .+++++|.+.-. +.+ +.+.+.+++. .|+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv------g~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~------np~ 68 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF------RNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDR------VPG 68 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC------CeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHH------CCC
Confidence 68999999999999999999995 678888875311 111 1111222221 122
Q ss_pred Ccc---CCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHH
Q 014739 126 IKL---GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKR 163 (419)
Q Consensus 126 ~~l---~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~ 163 (419)
..+ +..+ .+...+..++.|+||.++-+...+..+.+
T Consensus 69 v~I~~~~~~i--~~~~~~f~~~fdvVi~alDn~~aR~~in~ 107 (291)
T cd01488 69 VNVTPHFGKI--QDKDEEFYRQFNIIICGLDSIEARRWING 107 (291)
T ss_pred CEEEEEeccc--CchhHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 211 1111 12224567889999999987666555544
No 382
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.31 E-value=0.24 Score=47.93 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=54.2
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.++|..|.+.+ ..|++.... +.+++
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~~-------atVt~chs~----------------------------------t~~l~ 196 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNEN-------ATVTYCHSK----------------------------------TKNLA 196 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC-------CEEEEEeCC----------------------------------chhHH
Confidence 36899999 6889999999999988 788876421 12345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.++....+ +. ..++++|++||++.
T Consensus 197 ~~~~~ADIvI~AvG~p~~---i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 197 ELTKQADILIVAVGKPKL---IT--ADMVKEGAVVIDVG 230 (284)
T ss_pred HHHHhCCEEEEecCCCCc---CC--HHHcCCCCEEEEee
Confidence 567899999999986553 21 24568899999873
No 383
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.25 E-value=0.11 Score=52.92 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=31.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|||+|||+|.-|.++|..|+++|. .+|+++.|.++.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~------~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSH------LNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCC------CCEEEEecCCcC
Confidence 689999999999999999999981 399999998653
No 384
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.23 E-value=0.11 Score=50.65 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=31.6
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|||.|.|+ |.+|..++..|++.| ++|++++|+++.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g-------~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG-------EEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC-------CEEEEEEecCcc
Confidence 58999995 999999999999999 899999998654
No 385
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.17 E-value=0.11 Score=52.66 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=31.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
+++|.|||+|..|.++|..|+++| ++|+++.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G-------~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG-------LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC-------CcEEEEccC
Confidence 468999999999999999999999 999999997
No 386
>PRK07045 putative monooxygenase; Reviewed
Probab=93.16 E-value=0.13 Score=51.87 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=33.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+++|.|||+|..|.+.|..|+++| ++|+++.+.++.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G-------~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARG-------HSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcC-------CcEEEEeCCCcc
Confidence 4568999999999999999999999 899999987753
No 387
>PLN00016 RNA-binding protein; Provisional
Probab=93.10 E-value=0.12 Score=52.24 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=44.9
Q ss_pred ccCCCCCCcccccccCCCCCCCCCCCcCeEEEE----C-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 35 APAFEDNNSETLPSSFSSGSDDGVLHKSKVTVV----G-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~II----G-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+.....+..|.+.++ ..........++||.|+ | +|.+|..++..|.++| |+|++++|++..
T Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-------~~V~~l~R~~~~ 92 (378)
T PLN00016 27 ALAARAQGSRRASQV-AGAAAAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-------HEVTLFTRGKEP 92 (378)
T ss_pred Hhhhccccccccccc-hhhhhhcccccceEEEEeccCCCceeEhHHHHHHHHHCC-------CEEEEEecCCcc
Confidence 344455555555553 33344455666899999 7 5999999999999999 999999998653
No 388
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.10 E-value=0.28 Score=47.45 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=53.2
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
++|.||| ...+|.++|..|.+.| ..|++.... |.++++
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~-------atVtichs~----------------------------------T~~l~~ 195 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHD-------ATVTIAHSK----------------------------------TRNLKQ 195 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCC-------CEEEEECCC----------------------------------CCCHHH
Confidence 6899999 5788999999999888 788876422 233555
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
..+.||+||.++.-..+ +. ..++++|++||++.
T Consensus 196 ~~~~ADIvI~AvG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 196 LTKEADILVVAVGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred HHhhCCEEEEccCCcCc---cC--HHHcCCCcEEEEee
Confidence 67889999999986543 11 24578899999873
No 389
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=93.02 E-value=0.28 Score=40.11 Aligned_cols=85 Identities=16% Similarity=0.071 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCCCEEEE
Q 014739 71 NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVF 150 (419)
Q Consensus 71 ~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~aDlVil 150 (419)
+-+..++..|.+.| .+|.++|..-.. +.+...+. ..+++.+++++++++++|.||+
T Consensus 17 Sp~~~l~~~L~~~g-------~~V~~~DP~v~~-------~~~~~~~~----------~~~~~~~~~~~~~~~~~D~vvl 72 (106)
T PF03720_consen 17 SPALELIEELKERG-------AEVSVYDPYVDE-------EEIKELGK----------LEGVEVCDDLEEALKGADAVVL 72 (106)
T ss_dssp -HHHHHHHHHHHTT--------EEEEE-TTSHH-------HHHHHHCH----------HHCEEEESSHHHHHTTESEEEE
T ss_pred CHHHHHHHHHHHCC-------CEEEEECCccCh-------HHHHhhCC----------ccceEEecCHHHHhcCCCEEEE
Confidence 34567899999999 899999865322 22222110 0135667888888999999999
Q ss_pred ccCcchHHH-HHHHHhccCCCCcEEEEeec
Q 014739 151 VTPHQFMEG-ICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 151 avp~~~~~~-vl~~l~~~l~~~tiivs~~n 179 (419)
+++...... -.+.+...+..+.+|++.-+
T Consensus 73 ~t~h~~f~~l~~~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 73 ATDHDEFRELDWEEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp SS--GGGGCCGHHHHHHHSCSSEEEEESSS
T ss_pred EecCHHHhccCHHHHHHhcCCCCEEEECcc
Confidence 999866655 34566666666788888754
No 390
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.01 E-value=0.15 Score=50.03 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=29.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.|+|||+|..|.+.|..|++.| ++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G-------~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG-------HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT-------SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCC-------CeEEEEeec
Confidence 4899999999999999999999 999999998
No 391
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=92.98 E-value=0.57 Score=46.54 Aligned_cols=106 Identities=10% Similarity=0.120 Sum_probs=54.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC-----CC--ccC-CCeE
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP-----GI--KLG-KNVV 133 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~-----~~--~l~-~~i~ 133 (419)
+||+|.|.|.||..+.+.+.+... .++...+ ....+.+.++--++-.-.+.++.. +. .+. ..++
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~------~~ivain--d~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~ 74 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPE------LEFVQIN--DPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIR 74 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCC------cEEEEec--CCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEE
Confidence 799999999999999998776541 3443333 211112333333332211111111 11 111 2233
Q ss_pred ec--CCHHHH-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 134 AD--PDLENA-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 134 ~~--~~~~ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.. .++++. ..++|+||.|+.....++.... ++..|+..|.++
T Consensus 75 v~~~~~~~~~~w~gvDiVle~tG~~~s~~~a~~---hl~aGak~V~iS 119 (334)
T PRK08955 75 TTQNKAIADTDWSGCDVVIEASGVMKTKALLQA---YLDQGVKRVVVT 119 (334)
T ss_pred EEecCChhhCCccCCCEEEEccchhhcHHHHHH---HHHCCCEEEEEC
Confidence 32 245442 4589999999987655544432 333455555544
No 392
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.97 E-value=0.33 Score=47.31 Aligned_cols=35 Identities=29% Similarity=0.201 Sum_probs=31.5
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++|.|.| +|-+|+.++..|++.| ++|++++|+.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-------~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-------YTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-------CEEEEEEcCCCc
Confidence 6899999 5999999999999999 899999987653
No 393
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.97 E-value=0.34 Score=46.81 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=53.5
Q ss_pred cCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-.++.|||-+ ..|.++|..|.+.| ..|++..+.. .+++
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~-------atVtv~hs~t----------------------------------~~L~ 190 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNAD-------ATVTICHSKT----------------------------------ENLK 190 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCC-------CeeEEEecCh----------------------------------hHHH
Confidence 3689999987 99999999999888 7888876432 1244
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.+++||+||.+++-..+ +. ..++++|++||++.
T Consensus 191 ~~~~~ADIvI~Avgk~~l---v~--~~~vk~GavVIDVg 224 (279)
T PRK14178 191 AELRQADILVSAAGKAGF---IT--PDMVKPGATVIDVG 224 (279)
T ss_pred HHHhhCCEEEECCCcccc---cC--HHHcCCCcEEEEee
Confidence 557889999999974322 11 22358899999874
No 394
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.92 E-value=0.36 Score=48.28 Aligned_cols=35 Identities=26% Similarity=0.133 Sum_probs=29.8
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++.|+|+|.+|...+..+...|. .+|.+.|+++++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga------~~Viv~d~~~~R 205 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA------SVVIVVDRSPER 205 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC------ceEEEeCCCHHH
Confidence 79999999999998888877773 688888888765
No 395
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.91 E-value=0.14 Score=51.97 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=30.8
Q ss_pred CeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEEEEecCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~ 101 (419)
..|.|||+|.+|.+.|..|++. | ++|+++++.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g-------~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPG-------ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCC-------CeEEEEeCCC
Confidence 5899999999999999999998 8 8999999875
No 396
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.90 E-value=0.77 Score=42.81 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=31.0
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..++|.|.|+ |.+|..++..|++.| ++|.+.+|+.+
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G-------~~V~~~~r~~~ 41 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAG-------AHVVVNYRQKA 41 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCC-------CEEEEEeCCch
Confidence 3468999996 999999999999999 89999888753
No 397
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.86 E-value=0.32 Score=46.98 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=53.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.+++..|.++| ..|++.... |.++.
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~-------AtVt~chs~----------------------------------T~~l~ 196 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNEN-------ATVTICHSK----------------------------------TKNLK 196 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 6789999999999888 788877532 12345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 197 ~~~~~ADIvIsAvGkp~~---i~--~~~ik~gavVIDv 229 (278)
T PRK14172 197 EVCKKADILVVAIGRPKF---ID--EEYVKEGAIVIDV 229 (278)
T ss_pred HHHhhCCEEEEcCCCcCc---cC--HHHcCCCcEEEEe
Confidence 557789999999987553 11 2457889999987
No 398
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.83 E-value=0.29 Score=47.64 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=53.4
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
++|+||| ...+|.+++..|.+.| ..|++.... |.++++
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~-------atVtv~hs~----------------------------------T~~l~~ 197 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAAN-------ATVTIAHSR----------------------------------TQDLAS 197 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHHH
Confidence 6899999 6789999999999988 788777422 234555
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.++.||+||.|+.-..+ +. ..++++|++||++.
T Consensus 198 ~~~~ADIvIsAvGkp~~---i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 198 ITREADILVAAAGRPNL---IG--AEMVKPGAVVVDVG 230 (297)
T ss_pred HHhhCCEEEEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 67889999999986443 11 34678899999873
No 399
>PRK06185 hypothetical protein; Provisional
Probab=92.81 E-value=0.16 Score=51.55 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=31.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
...|.|||+|..|.++|..|+++| ++|+++++.+.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G-------~~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAG-------VDVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCc
Confidence 357999999999999999999999 89999998753
No 400
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.80 E-value=0.13 Score=51.77 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=30.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
|.+|.|||+|..|.++|..|++.| ++|+++++.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G-------~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKG-------IKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCC-------CeEEEecCC
Confidence 568999999999999999999999 899999975
No 401
>PRK07877 hypothetical protein; Provisional
Probab=92.77 E-value=0.29 Score=53.52 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=54.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc-------------chHHHHHHhcCcCCccCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG-------------EKLTDVINRTNENVKYLPG 125 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~-------------~~l~~~i~~~g~~~~~~~~ 125 (419)
.||+|+|+| +|+..|..|+.+|.. -+++++|.+.=. +.+ +.+.+.|++ + .|.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvv-----G~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~--i----np~ 175 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLC-----GELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAE--L----DPY 175 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCC-----CeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHH--H----CCC
Confidence 589999999 999999999999820 267888775311 000 001111111 1 122
Q ss_pred Ccc---CCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHh
Q 014739 126 IKL---GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 126 ~~l---~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~ 165 (419)
+.+ +..+. ..+.++.+.++|+||-|+-+...+-.+.+..
T Consensus 176 i~v~~~~~~i~-~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a 217 (722)
T PRK07877 176 LPVEVFTDGLT-EDNVDAFLDGLDVVVEECDSLDVKVLLREAA 217 (722)
T ss_pred CEEEEEeccCC-HHHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 211 11111 1245556788999999999988777776543
No 402
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.77 E-value=0.33 Score=46.95 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=53.9
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~~-------atVt~chs~----------------------------------T~~l~ 197 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEMN-------ATVTLCHSK----------------------------------TQNLP 197 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 6889999999999888 788877532 22344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 198 ~~~~~ADIvIsAvGk~~~---i~--~~~ik~gavVIDv 230 (284)
T PRK14177 198 SIVRQADIIVGAVGKPEF---IK--ADWISEGAVLLDA 230 (284)
T ss_pred HHHhhCCEEEEeCCCcCc---cC--HHHcCCCCEEEEe
Confidence 557889999999986544 11 3467889999987
No 403
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=92.71 E-value=0.32 Score=45.68 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=29.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEec
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVF 99 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r 99 (419)
....++|+|.|.|.+|..++..|.+.| ..|+ +.|.
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g-------~~vv~v~D~ 63 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAG-------AKVVAVSDS 63 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEECC
Confidence 345589999999999999999999999 7776 4444
No 404
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.71 E-value=0.21 Score=47.01 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=33.1
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+..++|.|.|+ |.+|..++..|++.| ++|.+.+|+++.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G-------~~v~~~~r~~~~ 43 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAG-------AAVAIADLNQDG 43 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-------CeEEEEeCChHH
Confidence 44568999996 999999999999999 899999998754
No 405
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=92.70 E-value=0.3 Score=48.98 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=56.6
Q ss_pred CeEEEECc-chHHHHHHHHHH-HcCCCCCCCC-ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014739 62 SKVTVVGS-GNWGSVASKLIA-SNTLRLSSFH-DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La-~~G~~~~~~~-~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
+||||+|+ |.+|..|...|. +.. |+ .++.+....+.. |..+ .+.+... .++..++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~-----fp~~~~~~~ss~~s~-------------g~~~-~f~~~~~--~v~~~~~~ 59 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD-----FDAIRPVFFSTSQLG-------------QAAP-SFGGTTG--TLQDAFDI 59 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC-----CccccEEEEEchhhC-------------CCcC-CCCCCcc--eEEcCccc
Confidence 58999996 999999999998 544 22 234444432211 1111 1111111 22222222
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCC--cEEEEeecCc
Q 014739 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGD--VEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~--tiivs~~nGi 181 (419)
+...+.|++|.|.++...+++...+.. .| ++||+.+.-.
T Consensus 60 -~~~~~vDivffa~g~~~s~~~~p~~~~---aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 60 -DALKALDIIITCQGGDYTNEIYPKLRE---SGWQGYWIDAASSL 100 (366)
T ss_pred -ccccCCCEEEEcCCHHHHHHHHHHHHh---CCCCeEEEECChhh
Confidence 246789999999998877776655543 46 6788877533
No 406
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.68 E-value=0.48 Score=49.09 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=30.5
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
||.|||+|..|.+.|..|.+.| ++|+++|+.+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G-------~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG-------WEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-------CEEEEECCCCc
Confidence 7999999999999999999999 99999998754
No 407
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.67 E-value=0.19 Score=48.21 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=34.7
Q ss_pred CCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 58 VLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+.++++.|-|+ +-+|..+|..|+++| ++|.++.|++++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g-------~~liLvaR~~~k 42 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG-------YNLILVARREDK 42 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCC-------CEEEEEeCcHHH
Confidence 455668999995 999999999999999 999999999876
No 408
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.67 E-value=0.33 Score=46.98 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=53.3
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.++|..|.+.+ ..|++.... |.+++
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~-------atVtichs~----------------------------------T~~l~ 195 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNEN-------ATVTIAHSR----------------------------------TKDLP 195 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 46899999 5788999999999888 788876422 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+.++.||+||.++....+ +. ..++++|+++|++
T Consensus 196 ~~~~~ADIvI~AvG~~~~---i~--~~~vk~GavVIDv 228 (284)
T PRK14170 196 QVAKEADILVVATGLAKF---VK--KDYIKPGAIVIDV 228 (284)
T ss_pred HHHhhCCEEEEecCCcCc---cC--HHHcCCCCEEEEc
Confidence 567889999999987553 11 2457789999986
No 409
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.63 E-value=0.21 Score=46.54 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=32.8
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+..++|.|.| .|.+|..++..|+++| +.|.+.+|+++.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g-------~~V~~~~r~~~~ 42 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADG-------AEVIVVDICGDD 42 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC-------CEEEEEeCCHHH
Confidence 4456899999 6999999999999999 899999998643
No 410
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.61 E-value=0.16 Score=52.38 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=33.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+..++|+|||||.-|.+.|+.|.+.| ++|+++.|+..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g-------~~v~vfEr~~~ 40 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREG-------HEVVVFERTDD 40 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCC-------CCceEEEecCC
Confidence 34578999999999999999999999 89999988764
No 411
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.60 E-value=0.19 Score=52.37 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=32.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+..++|+|||+|.-|.+.|..|.+.| ++|+++.++..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G-------~~v~vfE~~~~ 44 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREG-------HTVVVFEREKQ 44 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcC-------CeEEEEecCCC
Confidence 34578999999999999999999999 89999998754
No 412
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.59 E-value=0.26 Score=45.95 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=32.5
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+..++|.|.|+ |.+|..++..|++.| ++|.+.+|+++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G-------~~v~~~~r~~~~ 43 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAG-------ATVAFNDGLAAE 43 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcC-------CEEEEEeCCHHH
Confidence 44578999995 999999999999999 899999887653
No 413
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.54 E-value=0.34 Score=46.89 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=53.6
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.++|..|.+.+ ..|++.... |.+++
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~-------atVt~chs~----------------------------------T~nl~ 195 (282)
T PRK14166 157 GKDAVIIGASNIVGRPMATMLLNAG-------ATVSVCHIK----------------------------------TKDLS 195 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 5788999999999887 788866532 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+..+.||+||.|+.-..+ +. ..++++|+++|++.
T Consensus 196 ~~~~~ADIvIsAvGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 196 LYTRQADLIIVAAGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred HHHhhCCEEEEcCCCcCc---cC--HHHcCCCCEEEEec
Confidence 567889999999986543 11 24578899999873
No 414
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=92.52 E-value=1.2 Score=38.99 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.8
Q ss_pred CeEEEECcchHHHHHHHHHHHc
Q 014739 62 SKVTVVGSGNWGSVASKLIASN 83 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~ 83 (419)
+||+|+|+|.||..++..+.+.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~ 22 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER 22 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC
Confidence 5899999999999999988765
No 415
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=92.51 E-value=0.16 Score=51.62 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=30.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
..+|.|||+|..|.++|..|++.| ++|+++++.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G-------~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESD-------LRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCC-------CEEEEEcCC
Confidence 457999999999999999999999 899999985
No 416
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.49 E-value=0.35 Score=46.80 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=53.2
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.+++..|.+.+ ..|++.... |.++.
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~-------ATVt~chs~----------------------------------T~dl~ 196 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAK-------ATVTTCHRF----------------------------------TTDLK 196 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEEcCC----------------------------------CCCHH
Confidence 36899999 5789999999999888 788877532 12344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 197 ~~~k~ADIvIsAvGkp~~---i~--~~~vk~gavVIDv 229 (282)
T PRK14180 197 SHTTKADILIVAVGKPNF---IT--ADMVKEGAVVIDV 229 (282)
T ss_pred HHhhhcCEEEEccCCcCc---CC--HHHcCCCcEEEEe
Confidence 456789999999987543 11 2457789999987
No 417
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=92.45 E-value=0.24 Score=50.36 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=35.9
Q ss_pred CCCCCCCCCCCcC----eEEEECcchHHHHHHHHHHHc-CCCCCCCCc-eEEEEecCC
Q 014739 50 FSSGSDDGVLHKS----KVTVVGSGNWGSVASKLIASN-TLRLSSFHD-EVRMWVFEE 101 (419)
Q Consensus 50 ~~~~~~~~~~~~m----kI~IIGaG~mG~~lA~~La~~-G~~~~~~~~-~V~l~~r~~ 101 (419)
..+++..|-..+. .|.|||+|.+|++.|..|++. | . +|++++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g-------~~~V~vle~~~ 65 (407)
T TIGR01373 15 HRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHG-------ITNVAVLEKGW 65 (407)
T ss_pred CCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcC-------CCeEEEEEccc
Confidence 3556666555553 699999999999999999985 7 5 899999864
No 418
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.41 E-value=0.29 Score=49.76 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=33.1
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..+|||.|+|+ |.+|..++..|.++| ++|++++|++..
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G-------~~V~~l~R~~~~ 96 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRG-------YNVVAVAREKSG 96 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-------CEEEEEEechhh
Confidence 34579999995 999999999999999 999999998643
No 419
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=92.41 E-value=0.19 Score=51.01 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=31.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+|.|||+|..|.+.|..|++.| ++|+++++.++
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G-------~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAG-------IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCC-------CCEEEEECCCC
Confidence 58999999999999999999999 99999998774
No 420
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.41 E-value=0.19 Score=51.42 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=31.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
+++|.|||+|..|+..|..|++.| ++|++++..+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~G-------l~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRG-------VPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC-------CcEEEEEccC
Confidence 468999999999999999999999 8999999654
No 421
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=92.40 E-value=0.4 Score=46.73 Aligned_cols=72 Identities=24% Similarity=0.264 Sum_probs=53.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.++|..|.+.| ..|++.... |.+++
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~~-------ATVtvchs~----------------------------------T~nl~ 205 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKAD-------ATVTVVHSR----------------------------------TPDPE 205 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 46899999 5788999999999988 788877432 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.|+.-..+ +. ..++++|++||++.
T Consensus 206 ~~~~~ADIvv~AvGk~~~---i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 206 SIVREADIVIAAAGQAMM---IK--GDWIKPGAAVIDVG 239 (299)
T ss_pred HHHhhCCEEEEcCCCcCc---cC--HHHcCCCCEEEEee
Confidence 667899999999976421 21 34678899998863
No 422
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.38 E-value=0.39 Score=53.56 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=32.6
Q ss_pred CCCcCeEEEECcchHHHHH-HHHHHHcCCCCCCCCceEEEEecCC
Q 014739 58 VLHKSKVTVVGSGNWGSVA-SKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~l-A~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
+|.+++|.|||.|..|.+. |..|.+.| ++|+++|.++
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G-------~~V~~sD~~~ 38 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRG-------YSVSGSDLSE 38 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCC-------CeEEEECCCC
Confidence 3556679999999999997 99999999 9999999765
No 423
>PRK06126 hypothetical protein; Provisional
Probab=92.37 E-value=0.21 Score=53.02 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=32.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+|.|||+|..|..+|..|++.| ++|+++++.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G-------~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRG-------VDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC-------CcEEEEeCCCC
Confidence 458999999999999999999999 89999998764
No 424
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=92.32 E-value=1.3 Score=37.87 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=69.2
Q ss_pred cCeEEEECc----chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014739 61 KSKVTVVGS----GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
-++|+++|+ ..-+...+..|.++| ++|.=++.... .+.|.. -++..
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~G-------Y~ViPVNP~~~-------~~eiLG----------------~k~y~ 65 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKG-------YRVIPVNPKLA-------GEEILG----------------EKVYP 65 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCC-------CEEEeeCcccc-------hHHhcC----------------chhhh
Confidence 368999997 567888999999999 89888876432 133321 24567
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccC
Q 014739 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++.|.-...|+|-+..++..+.+++++.... +.-++.+|-|+.++
T Consensus 66 sL~dIpe~IDiVdvFR~~e~~~~i~~eal~~---~~kv~W~QlGi~n~ 110 (140)
T COG1832 66 SLADIPEPIDIVDVFRRSEAAPEVAREALEK---GAKVVWLQLGIRNE 110 (140)
T ss_pred cHHhCCCCCcEEEEecChhhhHHHHHHHHhh---CCCeEEEecCcCCH
Confidence 7777666899999999999999999886553 46788899898764
No 425
>PRK06184 hypothetical protein; Provisional
Probab=92.30 E-value=0.2 Score=52.66 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=33.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++.+|.|||+|..|.++|..|++.| ++|+++++.++.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~G-------i~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRG-------VSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEeCCCCC
Confidence 4568999999999999999999999 899999987643
No 426
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=92.27 E-value=0.16 Score=52.65 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=52.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC------------CCc---chHHHHHHhcCcCCccCCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL------------PSG---EKLTDVINRTNENVKYLPGI 126 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~------------~~~---~~l~~~i~~~g~~~~~~~~~ 126 (419)
++|+|||+|.-|.+.|..|+++| |+|+++.+.+.. +.. +..++.+.+.|....
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G-------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~----- 191 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAG-------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFK----- 191 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCC-------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEE-----
Confidence 79999999999999999999999 999999986543 000 122233444332111
Q ss_pred ccCCCeEecCCHHHHhcCCCEEEEccCcc
Q 014739 127 KLGKNVVADPDLENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 127 ~l~~~i~~~~~~~ea~~~aDlVilavp~~ 155 (419)
+...+-..-+.++...+.|.|++++.+.
T Consensus 192 -~~~~vG~~it~~~L~~e~Dav~l~~G~~ 219 (457)
T COG0493 192 -LNVRVGRDITLEELLKEYDAVFLATGAG 219 (457)
T ss_pred -EcceECCcCCHHHHHHhhCEEEEecccc
Confidence 1111111334566667789999998763
No 427
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=92.18 E-value=0.24 Score=53.70 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
...+.+|.|||+|..|.++|..|++.| ++|+++.|.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~G-------i~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKG-------FDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcC-------CeEEEEeccc
Confidence 445579999999999999999999999 8999999875
No 428
>PLN02214 cinnamoyl-CoA reductase
Probab=92.18 E-value=0.4 Score=47.62 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=32.2
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+|+|.|.|+ |.+|+.++..|.++| ++|++.+|+.+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G-------~~V~~~~r~~~ 45 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERG-------YTVKGTVRNPD 45 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc-------CEEEEEeCCch
Confidence 4578999997 999999999999999 99999998764
No 429
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.15 E-value=0.4 Score=46.65 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=53.4
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 160 Gk~vvViGrS~iVGkPla~lL~~~~-------aTVt~chs~----------------------------------T~~l~ 198 (294)
T PRK14187 160 GSDAVVIGRSNIVGKPMACLLLGEN-------CTVTTVHSA----------------------------------TRDLA 198 (294)
T ss_pred CCEEEEECCCccchHHHHHHHhhCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 6789999999999888 788876532 23345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+.++.||+||.++.-..+ + -..++++|++||++
T Consensus 199 ~~~~~ADIvVsAvGkp~~---i--~~~~ik~gaiVIDV 231 (294)
T PRK14187 199 DYCSKADILVAAVGIPNF---V--KYSWIKKGAIVIDV 231 (294)
T ss_pred HHHhhCCEEEEccCCcCc---c--CHHHcCCCCEEEEe
Confidence 567889999999986543 1 12456789999987
No 430
>PRK06475 salicylate hydroxylase; Provisional
Probab=92.13 E-value=0.19 Score=51.00 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=31.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.||.|||+|..|.++|..|+++| ++|+++.+.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G-------~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG-------WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCc
Confidence 58999999999999999999999 89999998765
No 431
>PTZ00367 squalene epoxidase; Provisional
Probab=92.10 E-value=0.23 Score=53.00 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=31.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.++|.|||+|..|.++|..|+++| ++|.++.|++
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G-------~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQG-------RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcC-------CEEEEEcccc
Confidence 468999999999999999999999 9999999976
No 432
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.08 E-value=0.37 Score=47.79 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=53.1
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.++|..|.+.+ ..|++.... |.+++
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~-------ATVTicHs~----------------------------------T~nl~ 252 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHD-------ATVSTVHAF----------------------------------TKDPE 252 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCC-------CEEEEEcCC----------------------------------CCCHH
Confidence 36899999 6788999999999888 788776432 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ + -..++++|++||++
T Consensus 253 ~~~~~ADIvIsAvGkp~~---v--~~d~vk~GavVIDV 285 (345)
T PLN02897 253 QITRKADIVIAAAGIPNL---V--RGSWLKPGAVVIDV 285 (345)
T ss_pred HHHhhCCEEEEccCCcCc---c--CHHHcCCCCEEEEc
Confidence 567899999999986543 1 13457889999986
No 433
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=92.07 E-value=0.78 Score=48.77 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=52.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcc---hHHHHHHhcCcCCccCCCCccC-CCeEec
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGE---KLTDVINRTNENVKYLPGIKLG-KNVVAD 135 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~---~l~~~i~~~g~~~~~~~~~~l~-~~i~~~ 135 (419)
...||+|||+|.+|+.+...|+..|. .++..++.+....+.. +++ ++.+. ..+++.+. .+....
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~------~~I~~vd~D~v~SNlnRIgEl~-e~A~~-----~n~~v~v~~i~~~~~ 195 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGF------PRFHAIVTDAEEHALDRIHELA-EIAEE-----TDDALLVQEIDFAED 195 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCC------CcEEEEeccccchhhhHHHHHH-HHHHH-----hCCCCceEeccCCcc
Confidence 44689999999999999999999995 6777776554321111 111 11111 11222110 011223
Q ss_pred CCHHHHhcCCCEEEEccCcchHH
Q 014739 136 PDLENAVKDANMLVFVTPHQFME 158 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~ 158 (419)
.+..+.+++.|+||..+......
T Consensus 196 ~dl~ev~~~~DiVi~vsDdy~~~ 218 (637)
T TIGR03693 196 QHLHEAFEPADWVLYVSDNGDID 218 (637)
T ss_pred hhHHHhhcCCcEEEEECCCCChH
Confidence 45667788999999998865433
No 434
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=92.07 E-value=4.1 Score=39.41 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=67.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHc----CCCCCCCCceEEEEecCCCCC-CcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014739 61 KSKVTVVGSGNWGSVASKLIASN----TLRLSSFHDEVRMWVFEETLP-SGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~----G~~~~~~~~~V~l~~r~~~~~-~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
..||.|+|+|+-|..+|..|... |.-..+-..+++++|+.--.. ++.++ ...+..-... ... ...
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l-~~~~~~~a~~--------~~~-~~~ 94 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDL-TPFKKPFARK--------DEE-KEG 94 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcc-hHHHHHHHhh--------cCc-ccC
Confidence 36899999999999999999887 731111113788888753110 11111 1111100000 000 123
Q ss_pred CCHHHHhc--CCCEEEEcc--CcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 136 PDLENAVK--DANMLVFVT--PHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~--~aDlVilav--p~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++.|+++ ++|++|=+. +.-..+++++....+. ++-+|..++|...
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 144 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSN-ERPIIFALSNPTS 144 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC-CCCEEEECCCcCC
Confidence 57888888 889987665 3466778888877654 5778889998554
No 435
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=92.06 E-value=0.23 Score=47.13 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=30.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCC----ceEEEEecCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFH----DEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~----~~V~l~~r~~ 101 (419)
+..||.|||+|.+|+.++..|++.|+...... .+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 45799999999999999999999741000000 2788888764
No 436
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.04 E-value=0.3 Score=45.69 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=32.6
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..++|.|.| .|.+|..++..|++.| ++|.+++|+++.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g-------~~v~~~~r~~~~ 40 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEG-------AKVVIADLNDEA 40 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-------CeEEEEeCCHHH
Confidence 346899999 5999999999999999 899999998754
No 437
>PRK09126 hypothetical protein; Provisional
Probab=92.01 E-value=0.21 Score=50.29 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=31.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+|.|||+|.-|.+.|..|+++| ++|+++++.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSG-------LKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC-------CcEEEEeCCCc
Confidence 57999999999999999999999 89999998764
No 438
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.98 E-value=0.49 Score=45.75 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=52.8
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~-------AtVtichs~----------------------------------T~nl~ 195 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERH-------ATVTIAHSR----------------------------------TADLA 195 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 6789999999999887 788876432 22345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 196 ~~~~~ADIvI~AvGk~~~---i~--~~~ik~gaiVIDv 228 (282)
T PRK14182 196 GEVGRADILVAAIGKAEL---VK--GAWVKEGAVVIDV 228 (282)
T ss_pred HHHhhCCEEEEecCCcCc---cC--HHHcCCCCEEEEe
Confidence 557889999999986432 11 2457889999986
No 439
>PRK07208 hypothetical protein; Provisional
Probab=91.93 E-value=0.23 Score=51.58 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+|.+++|.|||+|.-|.+.|..|+++| ++|+++..+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g-------~~v~v~E~~~~ 38 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRG-------YPVTVLEADPV 38 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCC-------CcEEEEecCCC
Confidence 366778999999999999999999999 89999987654
No 440
>PLN02985 squalene monooxygenase
Probab=91.92 E-value=0.28 Score=51.80 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=32.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
....+|.|||+|..|.++|..|+++| ++|++++|++
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G-------~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDG-------RRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcC-------CeEEEEECcC
Confidence 34458999999999999999999999 8999999975
No 441
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=91.91 E-value=2.1 Score=44.28 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=44.2
Q ss_pred eEEEECcchHHHH-HHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014739 63 KVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 63 kI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+|.|||.|..|.+ +|..|++.| ++|+++|..... ..+.+++.|.. +....+. +.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G-------~~v~~~D~~~~~-----~~~~l~~~gi~------------~~~g~~~-~~ 55 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG-------YQVSGSDIAENA-----TTKRLEALGIP------------IYIGHSA-EN 55 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC-------CeEEEECCCcch-----HHHHHHHCcCE------------EeCCCCH-HH
Confidence 4889999999998 999999999 999999976431 13445543321 1111233 33
Q ss_pred hcCCCEEEEcc
Q 014739 142 VKDANMLVFVT 152 (419)
Q Consensus 142 ~~~aDlVilav 152 (419)
+.++|+||.+-
T Consensus 56 ~~~~d~vV~sp 66 (448)
T TIGR01082 56 LDDADVVVVSA 66 (448)
T ss_pred CCCCCEEEECC
Confidence 56799888763
No 442
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=91.90 E-value=0.37 Score=51.06 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=32.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+++.|+|+|.+|.+++..|++.| .+|++++|+.++
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G-------~~V~i~nR~~e~ 414 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKG-------ARVVIANRTYER 414 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-------CEEEEEcCCHHH
Confidence 468999999999999999999999 799999998665
No 443
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.86 E-value=0.21 Score=49.99 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=29.6
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.|.|||+|.+|.+.|..|++.| .+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g-------~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHG-------KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCC-------CeEEEEeccC
Confidence 5899999999999999999999 8999999853
No 444
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=91.82 E-value=0.41 Score=47.68 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=53.3
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~-------ATVTicHs~----------------------------------T~nl~ 269 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQRED-------ATVSIVHSR----------------------------------TKNPE 269 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCC-------CeEEEeCCC----------------------------------CCCHH
Confidence 36899999 6889999999999888 788876432 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 270 ~~~r~ADIVIsAvGkp~~---i~--~d~vK~GAvVIDV 302 (364)
T PLN02616 270 EITREADIIISAVGQPNM---VR--GSWIKPGAVVIDV 302 (364)
T ss_pred HHHhhCCEEEEcCCCcCc---CC--HHHcCCCCEEEec
Confidence 567899999999986543 11 2457889999986
No 445
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.82 E-value=0.46 Score=45.99 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=52.2
Q ss_pred cCeEEEEC-cchHHHHHHHHHHH--cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014739 61 KSKVTVVG-SGNWGSVASKLIAS--NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~--~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
-+++.||| .+.+|.+++..|.+ .+ ..|++.... |.+
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~~~-------atVtvchs~----------------------------------T~~ 196 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRSEN-------ATVTLCHTG----------------------------------TRD 196 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhccCC-------CEEEEeCCC----------------------------------CCC
Confidence 36899999 57899999999987 55 667766432 234
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++.++.||+||.++....+ +. ..++++|++||++
T Consensus 197 l~~~~k~ADIvV~AvGkp~~---i~--~~~ik~GavVIDv 231 (284)
T PRK14193 197 LAAHTRRADIIVAAAGVAHL---VT--ADMVKPGAAVLDV 231 (284)
T ss_pred HHHHHHhCCEEEEecCCcCc---cC--HHHcCCCCEEEEc
Confidence 55567889999999986543 11 3467889999986
No 446
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.81 E-value=0.5 Score=45.81 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=52.1
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-+++.||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 159 GK~vvViGrS~iVGkPla~lL~~~~-------ATVtichs~----------------------------------T~~L~ 197 (288)
T PRK14171 159 GKNVVIIGRSNIVGKPLSALLLKEN-------CSVTICHSK----------------------------------THNLS 197 (288)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 5788999999999887 788766421 23345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 198 ~~~~~ADIvV~AvGkp~~---i~--~~~vk~GavVIDv 230 (288)
T PRK14171 198 SITSKADIVVAAIGSPLK---LT--AEYFNPESIVIDV 230 (288)
T ss_pred HHHhhCCEEEEccCCCCc---cC--HHHcCCCCEEEEe
Confidence 557889999999985432 11 2457889999987
No 447
>PLN02650 dihydroflavonol-4-reductase
Probab=91.80 E-value=0.51 Score=46.84 Aligned_cols=37 Identities=27% Similarity=0.207 Sum_probs=32.4
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..++|.|.|+ |.+|+.++..|++.| ++|++.+|+++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G-------~~V~~~~r~~~~ 41 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG-------YTVRATVRDPAN 41 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC-------CEEEEEEcCcch
Confidence 4568999995 999999999999999 899999987654
No 448
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=91.75 E-value=0.22 Score=49.82 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=30.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.|.|||+|.-|.++|..|+++| ++|++++|.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G-------~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSG-------LKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCC-------CEEEEEeCCCc
Confidence 3899999999999999999999 89999999864
No 449
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.75 E-value=0.45 Score=49.07 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=32.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+|||+|+|+|.=|.+.+..|.+.| .+|+++|.++.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-------~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-------AEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-------CeEEEEcCCCC
Confidence 789999999999999999999999 99999997654
No 450
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.75 E-value=0.25 Score=46.49 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=31.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|++.|. .+++++|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GV------g~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGV------GKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC------CEEEEECCCE
Confidence 4689999999999999999999995 6899999764
No 451
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.64 E-value=0.21 Score=54.33 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=31.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
++|.|||+|.+|.+.|..|++.| ++|++++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G-------~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRG-------WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCC-------CeEEEEecCC
Confidence 58999999999999999999999 8999999874
No 452
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=91.60 E-value=0.25 Score=52.32 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=28.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+||+|||+|.-|.+.++.|.+.| .+|+++.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g-------~~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG-------LEVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT--------EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCC-------CCCeEEecCCCC
Confidence 68999999999999999999999 899999987654
No 453
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.58 E-value=0.55 Score=45.53 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=52.1
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.++|..|.+.|. +.+..|++.... |.+++
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~~~---~~~AtVtvchs~----------------------------------T~~l~ 195 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQKHP---DTNATVTLLHSQ----------------------------------SENLT 195 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhCcC---CCCCEEEEeCCC----------------------------------CCCHH
Confidence 36899999 57889999999998730 000567655321 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+.++.||+||.++....+ +. ..++++|++||++
T Consensus 196 ~~~~~ADIvV~AvG~p~~---i~--~~~ik~GavVIDv 228 (287)
T PRK14181 196 EILKTADIIIAAIGVPLF---IK--EEMIAEKAVIVDV 228 (287)
T ss_pred HHHhhCCEEEEccCCcCc---cC--HHHcCCCCEEEEe
Confidence 667899999999986543 11 3467889999987
No 454
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=91.56 E-value=0.26 Score=50.18 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
++|.|||+|.-|++.|..|+++| ++|.++++.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G-------~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAG-------IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-------CcEEEEecCCC
Confidence 58999999999999999999999 89999998754
No 455
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=91.53 E-value=0.28 Score=52.12 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=32.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+.+|.|||+|..|.++|..|++.| ++|+++++.++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G-------~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQG-------VPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC-------CcEEEEeCCCC
Confidence 4458999999999999999999999 89999998864
No 456
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=91.52 E-value=1.7 Score=43.27 Aligned_cols=109 Identities=9% Similarity=0.097 Sum_probs=56.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccC-----CCC--ccC-CCe
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYL-----PGI--KLG-KNV 132 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~-----~~~--~l~-~~i 132 (419)
++||+|.|+|.+|..+.+.|.+.+. +.++.++..+.-. +.+.++--++-.-.+.++. .+. .+. ..+
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~-----~~~l~vvaind~~-~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i 74 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGR-----RAEITVVAINELA-DAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAI 74 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCC-----CCceEEEEecCCC-CHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEE
Confidence 5799999999999999999887641 1356666444311 2223222222111110100 010 111 123
Q ss_pred Eec--CCHHHH-h--cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014739 133 VAD--PDLENA-V--KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 133 ~~~--~~~~ea-~--~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.. .++++. . .++|+||.|+.....++..... +..|...|.++
T Consensus 75 ~v~~~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~---l~aGAk~V~iS 122 (336)
T PRK13535 75 RLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAH---IAAGAKKVLFS 122 (336)
T ss_pred EEEEcCCcccCcccccCCCEEEEccchhhhHHHHHHH---HHcCCEEEEec
Confidence 332 344432 2 4799999999987666554332 23454444443
No 457
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=91.48 E-value=0.25 Score=51.15 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=32.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|||+|+|+|.-|.+-|..|+++| ++|+++.++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g-------~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAG-------YDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC-------CceEEEeccCc
Confidence 79999999999999999999999 99999998764
No 458
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.46 E-value=0.42 Score=46.42 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=31.7
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.++|.|.|+ |.+|..+|..|++.| ++|.+.+|+.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G-------~~Vi~~~R~~~~ 76 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRG-------ATVVAVARREDL 76 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 367999995 999999999999999 899999998654
No 459
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=91.46 E-value=0.33 Score=51.46 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=33.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+...+|.|||+|..|..+|..|++.| ++|+++++.++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G-------~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYG-------VRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC-------CcEEEEecCCC
Confidence 44568999999999999999999999 89999999864
No 460
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=91.45 E-value=0.26 Score=49.83 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=32.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+|.|||+|..|..+|..|++.| ++|+++++.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G-------~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAG-------IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcC-------CCEEEEEcCCc
Confidence 358999999999999999999999 89999998864
No 461
>PRK06194 hypothetical protein; Provisional
Probab=91.37 E-value=0.42 Score=45.78 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=32.3
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+.+++|.|.|+ |.+|..++..|++.| ++|.+++|+.+.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G-------~~V~~~~r~~~~ 42 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALG-------MKLVLADVQQDA 42 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC-------CEEEEEeCChHH
Confidence 34568999985 899999999999999 899999987543
No 462
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=91.37 E-value=0.29 Score=49.76 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=33.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.++.|.|||+|.-|++.|..|+++| .+|.++.+..+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G-------~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG-------LDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC-------CeEEEEecCCCC
Confidence 4568999999999999999999999 899999997654
No 463
>PLN00198 anthocyanidin reductase; Provisional
Probab=91.34 E-value=0.71 Score=45.52 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=33.4
Q ss_pred CCCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 58 VLHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
-+.+++|.|.| +|-+|+.++..|.+.| ++|.+..|+.+.
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g-------~~V~~~~r~~~~ 45 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKG-------YAVNTTVRDPEN 45 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCC-------CEEEEEECCCCC
Confidence 34468899999 7999999999999999 899888887643
No 464
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.31 E-value=1 Score=46.41 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=31.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.++|.|+|.|..|.+.|..|++.| ++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g-------~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG-------AEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCCC
Confidence 468999999999999999999999 89999997654
No 465
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=91.30 E-value=6.7 Score=37.70 Aligned_cols=110 Identities=13% Similarity=0.132 Sum_probs=68.7
Q ss_pred CCeEecCCHHHHhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEE-
Q 014739 130 KNVVADPDLENAVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVL- 206 (419)
Q Consensus 130 ~~i~~~~~~~ea~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~- 206 (419)
.++++++|-.|+++++|++|+.+|- .....+.+.+.+++++|.+|...=. +++ ..+...+++ ++. +..+.
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCT-Ipt-----~~ly~~le~-l~R~DvgIsS 199 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACT-IPT-----TKFAKIFKD-LGRDDLNVTS 199 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEecccc-CCH-----HHHHHHHHH-hCcccCCeec
Confidence 3577888777889999999999997 4568889999999999998874321 321 344555554 342 22111
Q ss_pred eCcchHHHHHhcCceeEEEee-cCCHHHHHHHHHHhCCCCcEEEE
Q 014739 207 MGANIANEIAVEKFSEATVGY-RDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 207 ~gp~~a~e~~~g~~~~~~~~~-~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
.-|..+-+ ..|+ ...+. ..+++..+++.++-++.+...+.
T Consensus 200 ~HPaaVPg-t~Gq---~~i~egyAtEEqI~klveL~~sa~k~ay~ 240 (342)
T PRK00961 200 YHPGAVPE-MKGQ---VYIAEGYADEEAVEKLYEIGKKARGNAFK 240 (342)
T ss_pred cCCCCCCC-CCCc---eecccccCCHHHHHHHHHHHHHhCCCeee
Confidence 11211100 0122 12221 13789999999999887766554
No 466
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=91.29 E-value=0.31 Score=51.32 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=32.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
++....|.|||+|..|.+.|..|++.| .+|.+++++
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG-------l~V~LvEk~ 38 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRG-------LSVLLCEQD 38 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCC-------CeEEEEecC
Confidence 344568999999999999999999999 899999986
No 467
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=91.28 E-value=0.25 Score=49.83 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=31.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+|.|||+|..|.++|..|+++| ++|+++++.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G-------~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHG-------FSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCC-------CEEEEEcCCC
Confidence 58999999999999999999999 8999999875
No 468
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.26 E-value=0.82 Score=47.66 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=30.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+||+|+|+|.=|.+.++.|.+.| .+|+++|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g-------~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHL-------PAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcC-------CEEEEEcCCC
Confidence 468999999999999999999999 8999999654
No 469
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.26 E-value=0.32 Score=46.78 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=31.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
...+|.|+|+|.+|+..|..|++.|. .+++++|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV------g~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI------GAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC------CEEEEEeCCE
Confidence 34689999999999999999999995 6899999764
No 470
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=91.24 E-value=0.28 Score=49.00 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=29.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.|.|||+|.+|.+.|..|++.| ++|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G-------~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRG-------LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-------CeEEEEeCCC
Confidence 5899999999999999999999 8999999864
No 471
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=91.23 E-value=0.3 Score=46.04 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=29.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv------g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF------GQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC------CeEEEEeCCE
Confidence 68999999999999999999995 6799999864
No 472
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.22 E-value=0.54 Score=45.35 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=50.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh--cCcCCccCCCCccCCCeEe-cC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR--TNENVKYLPGIKLGKNVVA-DP 136 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~--~g~~~~~~~~~~l~~~i~~-~~ 136 (419)
...||++||.|.+-...-....+.|. ...|..+|++++. .++...+-+ .|+ ..++.+ +.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~-----~~~v~~iD~d~~A---~~~a~~lv~~~~~L----------~~~m~f~~~ 181 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGP-----GARVHNIDIDPEA---NELARRLVASDLGL----------SKRMSFITA 181 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT-------EEEEEESSHHH---HHHHHHHHH---HH-----------SSEEEEES
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCC-----CCeEEEEeCCHHH---HHHHHHHHhhcccc----------cCCeEEEec
Confidence 34599999999998775444434330 0457788888753 122222222 111 112222 22
Q ss_pred CHHH---HhcCCCEEEEccCcc----hHHHHHHHHhccCCCCcEEEE-eecCc
Q 014739 137 DLEN---AVKDANMLVFVTPHQ----FMEGICKRLVGKVNGDVEAIS-LIKGM 181 (419)
Q Consensus 137 ~~~e---a~~~aDlVilavp~~----~~~~vl~~l~~~l~~~tiivs-~~nGi 181 (419)
|..+ .+.++|+|+++--.. ..+++++.|.+.+++|+.|+. ..+|+
T Consensus 182 d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl 234 (276)
T PF03059_consen 182 DVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGL 234 (276)
T ss_dssp -GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GG
T ss_pred chhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhh
Confidence 2221 256899999998776 899999999999999987764 34554
No 473
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.22 E-value=0.28 Score=51.35 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=33.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|.+++|.|||+|.=|.+-|..|+++| ++|+++.++..
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G-------~~V~VlE~~~~ 37 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAG-------LKVTVLEKNDR 37 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCC-------CEEEEEEecCC
Confidence 35679999999999999999999999 99999997654
No 474
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=91.21 E-value=0.84 Score=45.30 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=46.3
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEe-cCCCCCCcchHHHHHHh-cCcCCcc-CCC--Ccc-CCCeEecCC
Q 014739 64 VTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWV-FEETLPSGEKLTDVINR-TNENVKY-LPG--IKL-GKNVVADPD 137 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~-r~~~~~~~~~l~~~i~~-~g~~~~~-~~~--~~l-~~~i~~~~~ 137 (419)
|+|+|.|.||...+..+.+... .+|..++ .+++. ...+.. .+....+ +++ ..+ ..++....+
T Consensus 1 VaInG~GrIGr~varav~~~~d------~elVaVnD~~~~~------~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~ 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDD------MKLVGVTKTSPDF------EAYRAKELGIPVYAASEEFIPRFEEAGIEVAGT 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCC------cEEEEEecCChHH------HHHHHHHhCCCEEeecCCcceEeccCceEecCC
Confidence 6899999999999999876531 4554433 33221 112221 2211100 111 011 123455667
Q ss_pred HHHHhcCCCEEEEccCcc
Q 014739 138 LENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~ 155 (419)
+++...++|+|+.|+|..
T Consensus 69 ~eeLl~~vDiVve~Tp~~ 86 (333)
T TIGR01546 69 LEDLLEKVDIVVDATPGG 86 (333)
T ss_pred HHHHhhcCCEEEECCCCC
Confidence 888888999999999973
No 475
>PLN02852 ferredoxin-NADP+ reductase
Probab=91.12 E-value=0.45 Score=49.87 Aligned_cols=39 Identities=23% Similarity=0.157 Sum_probs=33.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHH--cCCCCCCCCceEEEEecCCCC
Q 014739 58 VLHKSKVTVVGSGNWGSVASKLIAS--NTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~--~G~~~~~~~~~V~l~~r~~~~ 103 (419)
....+||+|||+|.-|.+.|..|++ .| ++|++|++.+..
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g-------~~Vtv~E~~p~p 63 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDG-------ARVDIIERLPTP 63 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCC-------CeEEEEecCCCC
Confidence 3445789999999999999999987 57 899999998743
No 476
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=91.10 E-value=1.4 Score=43.84 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=21.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNT 84 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G 84 (419)
++||||+|.|.||...++.+.+..
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~ 28 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRD 28 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCC
Confidence 479999999999999999987653
No 477
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=91.05 E-value=1.2 Score=41.71 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=31.2
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|+|.|+|+ |.+|..++..|++.| ++|.+.+|+++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-------~~V~~~~r~~~~ 36 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-------HKVIATGRRQER 36 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 68999995 999999999999999 899999997643
No 478
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=91.03 E-value=0.24 Score=50.21 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=30.2
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G-------~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSG-------LEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCC-------CEEEEEcCCC
Confidence 6999999999999999999999 8999999875
No 479
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=91.01 E-value=0.33 Score=49.07 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=31.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|++|.|||+|..|...|..|++.| .+|.+++++..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G-------~~V~viEk~~~ 35 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLN-------KRVLVVEKRNH 35 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC-------CeEEEEecCCC
Confidence 468999999999999999999999 89999997643
No 480
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=90.97 E-value=0.43 Score=50.10 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=31.7
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.......|.|||+|.||.++|..|++.+- ..+|.++++..
T Consensus 41 ~~~~~~DVvIIGGGI~G~a~A~~La~~~~-----~~~V~VlEk~~ 80 (497)
T PTZ00383 41 LGSDVYDVVIVGGGVTGTALFYTLSKFTN-----LKKIALIERRS 80 (497)
T ss_pred ccCCcccEEEECccHHHHHHHHHHHhhCC-----CCEEEEEecCc
Confidence 34445689999999999999999999630 04899999864
No 481
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=90.92 E-value=0.56 Score=47.01 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..|-|||+|..|+++|..|++.| ..|.++.|+-.
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdG-------RrVhVIERDl~ 79 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDG-------RRVHVIERDLS 79 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCC-------cEEEEEecccc
Confidence 35999999999999999999999 89999999853
No 482
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=90.75 E-value=1 Score=44.94 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=52.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCC--
Q 014739 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPD-- 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~-- 137 (419)
|++|+|||.|..|..|+..-..-| ++|.+.+.+++.. +..+.... +.. .+|
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG-------~~v~vLdp~~~~P-----A~~va~~~--------------i~~~~dD~~ 54 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLG-------IKVIVLDPDADAP-----AAQVADRV--------------IVAAYDDPE 54 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcC-------CEEEEecCCCCCc-----hhhcccce--------------eecCCCCHH
Confidence 578999999999999999999999 9999999877541 22232211 111 232
Q ss_pred -HHHHhcCCCEE---EEccCcchHHHHHHH
Q 014739 138 -LENAVKDANML---VFVTPHQFMEGICKR 163 (419)
Q Consensus 138 -~~ea~~~aDlV---ilavp~~~~~~vl~~ 163 (419)
+.+.+..||+| |--||...++.+...
T Consensus 55 al~ela~~~DViT~EfE~V~~~aL~~l~~~ 84 (375)
T COG0026 55 ALRELAAKCDVITYEFENVPAEALEKLAAS 84 (375)
T ss_pred HHHHHHhhCCEEEEeeccCCHHHHHHHHhh
Confidence 34556789998 566666666665544
No 483
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=90.71 E-value=0.35 Score=48.59 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=32.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+|.|||+|.-|.+.|..|++.| .+|+++++.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G-------~~v~v~E~~~~~ 40 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSG-------LRVALLAPRAPP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCC-------CeEEEEecCCCc
Confidence 47999999999999999999999 899999987653
No 484
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=90.69 E-value=0.67 Score=44.60 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=52.9
Q ss_pred cCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-+++.|||.+ .+|.+++..|.+.+ ..|++..... .++.
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~n-------aTVtvcHs~T----------------------------------~~l~ 194 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNAN-------ATVTVCHSRT----------------------------------KDLA 194 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhCC-------CEEEEEcCCC----------------------------------CCHH
Confidence 3689999964 57899999999988 7888776432 2344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++--..+-. .++++++.++|+.
T Consensus 195 ~~~k~ADIvv~AvG~p~~i~-----~d~vk~gavVIDV 227 (283)
T COG0190 195 SITKNADIVVVAVGKPHFIK-----ADMVKPGAVVIDV 227 (283)
T ss_pred HHhhhCCEEEEecCCccccc-----cccccCCCEEEec
Confidence 55678999999997644321 4678899999987
No 485
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.68 E-value=1.7 Score=43.04 Aligned_cols=89 Identities=10% Similarity=0.093 Sum_probs=51.9
Q ss_pred CeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014739 62 SKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+|.|+|+|.+|...+..+.+ .|. ..|+++++++++ .+..++.+.. ....+..+
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~------~~vi~~~~~~~k------~~~a~~~~~~-------------~~~~~~~~ 219 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPE------SKLVVFGKHQEK------LDLFSFADET-------------YLIDDIPE 219 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCC------CcEEEEeCcHhH------HHHHhhcCce-------------eehhhhhh
Confidence 479999999999988887765 331 578889988765 3333321210 01111112
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEE
Q 014739 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs 176 (419)
. ..+|+||-++........++.....++++..++.
T Consensus 220 ~-~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 220 D-LAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred c-cCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 1 2489999999743233344444455555544443
No 486
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.60 E-value=0.43 Score=51.90 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=32.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+||+|||+|..|...|..|++.| ++|+++++++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G-------~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG-------HDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CcEEEEecCCC
Confidence 4579999999999999999999999 89999998754
No 487
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.53 E-value=0.95 Score=44.31 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=51.9
Q ss_pred CeEEEECcchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH-
Q 014739 62 SKVTVVGSGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE- 139 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~- 139 (419)
++|+|+|+|-+|+. |-.++++ | ++|++++++..+ + -+.++..|... + +..+.|++
T Consensus 183 ~~vgI~GlGGLGh~-aVq~AKAMG-------~rV~vis~~~~k--k---eea~~~LGAd~-f---------v~~~~d~d~ 239 (360)
T KOG0023|consen 183 KWVGIVGLGGLGHM-AVQYAKAMG-------MRVTVISTSSKK--K---EEAIKSLGADV-F---------VDSTEDPDI 239 (360)
T ss_pred cEEEEecCcccchH-HHHHHHHhC-------cEEEEEeCCchh--H---HHHHHhcCcce-e---------EEecCCHHH
Confidence 58999999988854 6666665 7 899999998743 2 34455444210 0 12222432
Q ss_pred --HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 --NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 --ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
++...-|.++-++.+. .+..++.+..+++.+..+|.+
T Consensus 240 ~~~~~~~~dg~~~~v~~~-a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 240 MKAIMKTTDGGIDTVSNL-AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred HHHHHHhhcCcceeeeec-cccchHHHHHHhhcCCEEEEE
Confidence 2334568888777743 222233444445554444433
No 488
>PRK13984 putative oxidoreductase; Provisional
Probab=90.46 E-value=1.1 Score=48.26 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=32.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
...++|.|||+|..|.+.|..|.+.| ++|+++++++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G-------~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG-------YEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-------CeEEEEecCCC
Confidence 34568999999999999999999999 89999988653
No 489
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.39 E-value=0.54 Score=43.62 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=31.4
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEE-ecCCCC
Q 014739 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMW-VFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~-~r~~~~ 103 (419)
.+++|.|+|+ |.+|..++..|++.| ++|.+. +|+++.
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g-------~~v~~~~~r~~~~ 42 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEG-------AKVVIAYDINEEA 42 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-------CEEEEEcCCCHHH
Confidence 3468999995 999999999999999 899888 887644
No 490
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.29 E-value=0.47 Score=47.75 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=33.5
Q ss_pred CCCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 57 GVLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 57 ~~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
|....|||.|.|+ |.+|+.++..|.+.| ++|+.++|..
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G-------~~V~~v~r~~ 55 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEG-------HYIIASDWKK 55 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCC-------CEEEEEEecc
Confidence 4456689999996 999999999999999 9999999864
No 491
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=90.24 E-value=4.3 Score=38.72 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=64.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHc----CCCCCCCCceEEEEecCCCCC-CcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014739 61 KSKVTVVGSGNWGSVASKLIASN----TLRLSSFHDEVRMWVFEETLP-SGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~----G~~~~~~~~~V~l~~r~~~~~-~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
..||.|+|+|+-|..+|..|.+. |...++-..+++++|+.--.. +++++ ...+..-.+.. ......
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l-~~~~~~~a~~~--------~~~~~~ 95 (255)
T PF03949_consen 25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDL-NPHKKPFARKT--------NPEKDW 95 (255)
T ss_dssp G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSH-SHHHHHHHBSS--------STTT--
T ss_pred HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccC-ChhhhhhhccC--------cccccc
Confidence 46899999999999999999998 831000003688888752110 11121 11111000000 000112
Q ss_pred CCHHHHhcCC--CEEEEcc--CcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014739 136 PDLENAVKDA--NMLVFVT--PHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~~a--DlVilav--p~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++.|+++.+ |++|=+. +.-..+++++...++. ++-+|..++|...
T Consensus 96 ~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~-erPIIF~LSNPt~ 145 (255)
T PF03949_consen 96 GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHN-ERPIIFPLSNPTP 145 (255)
T ss_dssp SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHS-SSEEEEE-SSSCG
T ss_pred cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccC-CCCEEEECCCCCC
Confidence 5788888887 9987764 4467888888877754 4678889999654
No 492
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.24 E-value=3.6 Score=42.71 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=28.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.||+|+|+|.-|.+.++.|. .| .+|+++|.++
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~g-------~~v~v~D~~~ 38 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-NK-------YDVIVYDDLK 38 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-CC-------CEEEEECCCC
Confidence 58999999999999999998 48 8999999554
No 493
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=90.22 E-value=0.38 Score=49.46 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=30.3
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+|.|||+|..|+..|..|++.| .+|+++.+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G-------~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG-------VPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC-------CcEEEEecccc
Confidence 6999999999999999999999 89999986554
No 494
>PRK06182 short chain dehydrogenase; Validated
Probab=90.20 E-value=0.5 Score=44.97 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=32.0
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..++|.|.|+ |.+|..++..|++.| ++|.+.+|+++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G-------~~V~~~~r~~~~ 39 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQG-------YTVYGAARRVDK 39 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-------CEEEEEeCCHHH
Confidence 3468999995 999999999999999 899999998643
No 495
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.20 E-value=1.5 Score=43.61 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=28.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.+|.|+|+|.+|...++.+...| .+|.+++|+
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G-------~~vi~~~~~ 205 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG-------FEVYVLNRR 205 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-------CeEEEEecC
Confidence 57999999999999998888888 789999884
No 496
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=90.20 E-value=0.46 Score=45.46 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..|+|||+|.-|.+-|..|.++| .+|++++++.-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG-------~~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAG-------REVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcC-------cEEEEEEcCCCc
Confidence 46999999999999999999999 999999987643
No 497
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=90.19 E-value=0.6 Score=43.13 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=32.9
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014739 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+.+++|.|.|+ |.+|..++..|+++| ++|.+++|+++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g-------~~v~~~~r~~~~ 41 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADG-------AKVVIYDSNEEA 41 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-------CEEEEEeCChhH
Confidence 34468999995 999999999999999 899999998654
No 498
>PLN03075 nicotianamine synthase; Provisional
Probab=90.15 E-value=1.5 Score=42.82 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=60.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCH
Q 014739 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~ 138 (419)
...+|+.||.|..|..-...+++..- +..++.+|++++. ++.-++.-.. ..+ +..++++ +.|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p-----~~~~~giD~d~~a------i~~Ar~~~~~---~~g--L~~rV~F~~~Da 186 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP-----TTSFHNFDIDPSA------NDVARRLVSS---DPD--LSKRMFFHTADV 186 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC-----CCEEEEEeCCHHH------HHHHHHHhhh---ccC--ccCCcEEEECch
Confidence 55789999999998765555544430 0357888887654 2211111000 000 1112222 1222
Q ss_pred HHH---hcCCCEEEEccC----cchHHHHHHHHhccCCCCcEEEEe-ecCc
Q 014739 139 ENA---VKDANMLVFVTP----HQFMEGICKRLVGKVNGDVEAISL-IKGM 181 (419)
Q Consensus 139 ~ea---~~~aDlVilavp----~~~~~~vl~~l~~~l~~~tiivs~-~nGi 181 (419)
.+. ..+.|+||+.+= ...-..+++.+.+.+++|.+++.- ..|+
T Consensus 187 ~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 187 MDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred hhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 221 357999999951 256778899999999998777644 3443
No 499
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=90.11 E-value=1.1 Score=46.08 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=30.3
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014739 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
||.|||.|..|.++|..|.+.| ++|+++|..+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-------~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-------AEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-------CEEEEEeCCCC
Confidence 5899999999999999999999 99999997654
No 500
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.10 E-value=0.77 Score=44.77 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=51.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014739 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.++|..|.+.|. +.+..|++.... |.+++
T Consensus 161 Gk~vvViGrS~iVGkPla~lL~~~~~---~~~atVtv~hs~----------------------------------T~~l~ 203 (297)
T PRK14168 161 GAEVVVVGRSNIVGKPIANMMTQKGP---GANATVTIVHTR----------------------------------SKNLA 203 (297)
T ss_pred CCEEEEECCCCcccHHHHHHHHhccc---CCCCEEEEecCC----------------------------------CcCHH
Confidence 36899999 68899999999998730 000567765321 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014739 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+.++.||+||.|+.-..+ +. ..++++|++||++
T Consensus 204 ~~~~~ADIvVsAvGkp~~---i~--~~~ik~gavVIDv 236 (297)
T PRK14168 204 RHCQRADILIVAAGVPNL---VK--PEWIKPGATVIDV 236 (297)
T ss_pred HHHhhCCEEEEecCCcCc---cC--HHHcCCCCEEEec
Confidence 567899999999975443 11 2457889999987
Done!