Query 014741
Match_columns 419
No_of_seqs 144 out of 379
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 1.8E-56 3.9E-61 441.4 0.7 304 1-359 10-349 (351)
2 PF05830 NodZ: Nodulation prot 83.1 3.8 8.2E-05 42.1 7.1 69 261-333 206-279 (321)
3 PF00799 Gemini_AL1: Geminivir 52.3 17 0.00036 32.2 3.4 28 249-277 14-41 (114)
4 KOG3849 GDP-fucose protein O-f 49.2 22 0.00047 36.5 4.1 37 318-355 334-370 (386)
5 KOG3111 D-ribulose-5-phosphate 48.3 51 0.0011 32.2 6.3 139 137-327 42-197 (224)
6 KOG0572 Glutamine phosphoribos 45.2 22 0.00048 37.8 3.6 50 191-275 386-435 (474)
7 PF10892 DUF2688: Protein of u 41.8 20 0.00042 28.3 1.9 17 247-264 41-57 (60)
8 PF14771 DUF4476: Domain of un 39.6 17 0.00037 30.2 1.5 37 251-302 39-75 (95)
9 PRK10556 hypothetical protein; 38.1 21 0.00046 31.1 1.8 20 252-271 3-22 (111)
10 PF09400 DUF2002: Protein of u 36.0 19 0.00041 31.7 1.2 20 252-271 3-22 (111)
11 smart00874 B5 tRNA synthetase 32.6 43 0.00094 25.9 2.7 25 243-268 11-35 (71)
12 PF08924 DUF1906: Domain of un 26.3 67 0.0014 28.8 3.1 23 255-277 80-102 (136)
13 COG1747 Uncharacterized N-term 25.8 87 0.0019 34.9 4.3 53 359-416 377-429 (711)
14 COG4878 Uncharacterized protei 25.1 70 0.0015 32.8 3.2 57 257-314 93-150 (309)
15 PF03484 B5: tRNA synthetase B 24.8 51 0.0011 26.0 1.8 27 243-270 11-37 (70)
16 cd06418 GH25_BacA-like BacA is 22.7 91 0.002 30.1 3.4 25 255-279 92-116 (212)
17 PLN02232 ubiquinone biosynthes 22.5 74 0.0016 28.6 2.7 29 251-279 125-153 (160)
18 KOG3849 GDP-fucose protein O-f 22.2 44 0.00096 34.3 1.2 66 102-208 184-249 (386)
19 PF07862 Nif11: Nitrogen fixat 22.2 78 0.0017 23.1 2.3 29 240-269 16-44 (49)
20 PF13756 Stimulus_sens_1: Stim 20.1 1.2E+02 0.0026 26.3 3.4 27 252-278 1-29 (112)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=1.8e-56 Score=441.41 Aligned_cols=304 Identities=39% Similarity=0.598 Sum_probs=207.7
Q ss_pred CcchhhHHHHHHHHHHHhcceEeeccccCCCcccCCCC-----CCCcCchHHHHHhccCCeEEeccCchhhhccchhhh-
Q 014741 1 MNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQ-----FSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAI- 74 (419)
Q Consensus 1 LNQqR~~IcDaVaVARlLNATLViP~l~~~s~w~D~S~-----F~DIfD~dhFI~~L~~dVrIVk~LP~~~~~~~~~~~- 74 (419)
+|+||.++++||++|++||+|||||.|.....|++.++ |+|+||+++|+++++++|.+.+.+|..+........
T Consensus 10 fnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~~~~~ 89 (351)
T PF10250_consen 10 FNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFRLQYC 89 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-EEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccchhhc
Confidence 49999999999999999999999999999999999998 999999999999999999999999877755322100
Q ss_pred -----------------------cccccccCCCC-CCChhHHHhhhhhhhhhc------ceEEEeccCCcccCCCCchhh
Q 014741 75 -----------------------GSVVTDVDIPK-ESKPSFYLKNIIPILLRN------GVVHLLGFGNRLAFDPIPFQL 124 (419)
Q Consensus 75 -----------------------~~~~~~~~~~~-~s~~~~Y~~~vlP~l~k~------~Vi~l~~~~~rLa~~~~p~~i 124 (419)
........... ++.+.+|+++++|.+.++ +|+.|.++..++..+..+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 169 (351)
T PF10250_consen 90 WSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDL 169 (351)
T ss_dssp SS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGG
T ss_pred ccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccc
Confidence 00011122233 788999999999999987 999999999999988889999
Q ss_pred hhhhhhhcccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeechhhhhhhhc
Q 014741 125 QRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHS 204 (419)
Q Consensus 125 QrLRCrvnf~ALrF~~~I~~lg~~LV~RLr~~~~~~~~~~~~~~gpf~~~~~~~~~~~~~~~~~ylAlHLRfE~DMlA~s 204 (419)
|| +|+|.++|+++|+++|++++.. +++|||+|||+|+|| ++
T Consensus 170 ~r--------~l~~~~~i~~~a~~~i~~~~~~-----------------------------~~~yiavHlR~~~D~--~~ 210 (351)
T PF10250_consen 170 QR--------YLRFSPEIRELADKFIKRLLAG-----------------------------GGPYIAVHLRRGKDW--FS 210 (351)
T ss_dssp GG--------G--B-HHHHHHHHHHHHHH---------------------------------SSEEEEEE--SHHH--HH
T ss_pred eE--------EEecCHHHHHHHHHHHHHhhcc-----------------------------cCceEEEeecccCch--Hh
Confidence 88 9999999999999999999832 258999999999999 89
Q ss_pred cccCCCChhHHHHHHHHHHhhchhhhhcccCCCCCChHhhhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEeeceecCccc
Q 014741 205 LCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTR 284 (419)
Q Consensus 205 gC~~g~~~~E~~eL~~~R~~~~~~~~~~~~~~~~~~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGG~~ 284 (419)
+|.+++ ++..|+.+|... .+.+.+...+..|.||++|++++.+++++|+.+.|.||||++++|||.+
T Consensus 211 ~C~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~ 277 (351)
T PF10250_consen 211 ACEFKG---ERHLLASPRCWG----------KKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGER 277 (351)
T ss_dssp HHCT-T-------TTTHHHH-----------GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS------
T ss_pred hcccCC---chHHHHHhHhhc----------cccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccch
Confidence 999955 778888888541 1234577889999999999999999999999999999999999999999
Q ss_pred ccchhHhhCCCccccccCCCccccccccccccccchhheeeeccCceeeecCCCCchhhhhhhhhccccCCCCcc
Q 014741 285 RLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPT 359 (419)
Q Consensus 285 ~L~pL~~~FPnl~tKe~L~s~~EL~pf~~~ss~laALDy~Vc~~SDvFv~t~~G~n~a~~v~GhR~y~G~~~~kT 359 (419)
.|.+|+++||++++|+++.+.+|+++|.+ .++|+||++||++||+||+|. ||+|+..|+++|.|.|..++||
T Consensus 278 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~-~Stfs~~i~~~R~~~g~~~~~~ 349 (351)
T PF10250_consen 278 RLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTC-GSTFSSNIARERHYRGKPKRKS 349 (351)
T ss_dssp -----HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-T-T-HHHHHHHHHHHHSSSS---E
T ss_pred hHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecC-cchhHHHhhcccCcCCCCCCCC
Confidence 99999999999999999999999999986 899999999999999999999 6689999999999999887555
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=83.14 E-value=3.8 Score=42.10 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=39.2
Q ss_pred HHHhCCCCCcEEEEeeceecCcccccchhHhhCCCccccccCCCccccccccccc----c-ccchhheeeeccCceee
Q 014741 261 LAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFS----S-QLAALDFIGCTAANAFA 333 (419)
Q Consensus 261 L~alGf~~~T~IYlA~geiyGG~~~L~pL~~~FPnl~tKe~L~s~~EL~pf~~~s----s-~laALDy~Vc~~SDvFv 333 (419)
++++=.+.++.|+||+-. .+.++-+++.||.+++-+.=..+..-.++.+.. . .-|-+|-+.-+.+|+-|
T Consensus 206 ak~~~~~k~~~IFLATDS----aeVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LI 279 (321)
T PF05830_consen 206 AKALAPPKPVRIFLATDS----AEVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLI 279 (321)
T ss_dssp HHTS--SS-EEEEEEES-----HHHHHHHHHHSTTEE----------------HHHHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHhccCCCCeeEEEecCc----HHHHHHHHHHCCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEE
Confidence 344445678999999987 578899999999998875544333322333211 1 14778999999999999
No 3
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=52.30 E-value=17 Score=32.18 Aligned_cols=28 Identities=29% Similarity=0.333 Sum_probs=15.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeec
Q 014741 249 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 277 (419)
Q Consensus 249 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 277 (419)
+|||||||+...|++|--+ ....||..+
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~ 41 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVC 41 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEee
Confidence 6999999999999999754 467777554
No 4
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.23 E-value=22 Score=36.47 Aligned_cols=37 Identities=19% Similarity=0.015 Sum_probs=29.7
Q ss_pred cchhheeeeccCceeeecCCCCchhhhhhhhhccccCC
Q 014741 318 LAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGG 355 (419)
Q Consensus 318 laALDy~Vc~~SDvFv~t~~G~n~a~~v~GhR~y~G~~ 355 (419)
-+-+|..|--+||-||++--. .|+..|--.|-..|..
T Consensus 334 d~y~dLaIlGqadhFiGNCvS-sfsafvKRERD~~GrP 370 (386)
T KOG3849|consen 334 DMYTDLAILGQADHFIGNCVS-SFSAFVKRERDHAGRP 370 (386)
T ss_pred cchhhhhhhcccchhhhhhHH-HHHHHHhhhhcccCCc
Confidence 356788899999999977544 4999999999888853
No 5
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=48.33 E-value=51 Score=32.23 Aligned_cols=139 Identities=24% Similarity=0.301 Sum_probs=75.9
Q ss_pred ccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeechhh-----hhhhhcccc----
Q 014741 137 QFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEI-----DMVAHSLCE---- 207 (419)
Q Consensus 137 rF~~~I~~lg~~LV~RLr~~~~~~~~~~~~~~gpf~~~~~~~~~~~~~~~~~ylAlHLRfE~-----DMlA~sgC~---- 207 (419)
+|+|.| ..|.-+|++||.+-. ..+|.-+||=.|. |=+|-.|-.
T Consensus 42 ~FVpNi-T~G~pvV~slR~~~~---------------------------~~~ffD~HmMV~~Peq~V~~~a~agas~~tf 93 (224)
T KOG3111|consen 42 HFVPNI-TFGPPVVESLRKHTG---------------------------ADPFFDVHMMVENPEQWVDQMAKAGASLFTF 93 (224)
T ss_pred cccCCc-ccchHHHHHHHhccC---------------------------CCcceeEEEeecCHHHHHHHHHhcCcceEEE
Confidence 356665 368889999998521 1258888986653 223333322
Q ss_pred CC-CChhHHHHHHHHHHhhchhhhhcccCCCCCChHhhhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEeeceecCccccc
Q 014741 208 FG-GGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRL 286 (419)
Q Consensus 208 ~g-~~~~E~~eL~~~R~~~~~~~~~~~~~~~~~~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGG~~~L 286 (419)
|- -.++-.+-.+++|++.+... --.=|=||-|....+.. .-+-.+-.+.--=|||++.|
T Consensus 94 H~E~~q~~~~lv~~ir~~Gmk~G-----------------~alkPgT~Ve~~~~~~~---~~D~vLvMtVePGFGGQkFm 153 (224)
T KOG3111|consen 94 HYEATQKPAELVEKIREKGMKVG-----------------LALKPGTPVEDLEPLAE---HVDMVLVMTVEPGFGGQKFM 153 (224)
T ss_pred EEeeccCHHHHHHHHHHcCCeee-----------------EEeCCCCcHHHHHHhhc---cccEEEEEEecCCCchhhhH
Confidence 11 11222333445565443210 11236688888776665 23455555554459999998
Q ss_pred c-------hhHhhCCCccccccCCCccccccccccccccchhheeeec
Q 014741 287 G-------ALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCT 327 (419)
Q Consensus 287 ~-------pL~~~FPnl~tKe~L~s~~EL~pf~~~ss~laALDy~Vc~ 327 (419)
. -||+-|||+. +--...+.|=.-+....|.-++||+-
T Consensus 154 e~mm~KV~~lR~kyp~l~----ievDGGv~~~ti~~~a~AGAN~iVaG 197 (224)
T KOG3111|consen 154 EDMMPKVEWLREKYPNLD----IEVDGGVGPSTIDKAAEAGANMIVAG 197 (224)
T ss_pred HHHHHHHHHHHHhCCCce----EEecCCcCcchHHHHHHcCCCEEEec
Confidence 5 5888999983 21223444422223334555666653
No 6
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=45.25 E-value=22 Score=37.85 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=38.5
Q ss_pred EEeechhhhhhhhccccCCCChhHHHHHHHHHHhhchhhhhcccCCCCCChHhhhcCCCCCCCHHHHHHHHHHhCCCCCc
Q 014741 191 AIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKT 270 (419)
Q Consensus 191 AlHLRfE~DMlA~sgC~~g~~~~E~~eL~~~R~~~~~~~~~~~~~~~~~~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T 270 (419)
-||+|.---++-|+ |.||-.-...+||++++ +|++|++...-| +.
T Consensus 386 eVh~riAsPpi~~p-c~yGIdipt~keLIA~~-----------------------------~t~deiae~iga-----ds 430 (474)
T KOG0572|consen 386 EVHIRIASPPIKYP-CYYGIDIPTSKELIANK-----------------------------LTVDEIAEHIGA-----DS 430 (474)
T ss_pred EEEEEecCCccccc-ceeecCCCCHHHHHhcC-----------------------------CCHHHHHHHhCC-----Ce
Confidence 37999888889988 99887666677776544 688898887655 77
Q ss_pred EEEEe
Q 014741 271 HVFVA 275 (419)
Q Consensus 271 ~IYlA 275 (419)
.+|+.
T Consensus 431 v~yls 435 (474)
T KOG0572|consen 431 VAYLS 435 (474)
T ss_pred eEEee
Confidence 88886
No 7
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=41.80 E-value=20 Score=28.34 Aligned_cols=17 Identities=47% Similarity=0.661 Sum_probs=14.3
Q ss_pred CCCCCCCHHHHHHHHHHh
Q 014741 247 EGLCPLTPEEAVLMLAAL 264 (419)
Q Consensus 247 ~G~CPLtPeEvgl~L~al 264 (419)
-|-| +||||-+.+++++
T Consensus 41 C~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 41 CGDC-ITPEEDREILEAT 57 (60)
T ss_pred hhcc-CCHHHHHHHHHHH
Confidence 3567 9999999999885
No 8
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=39.64 E-value=17 Score=30.16 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEeeceecCcccccchhHhhCCCccccccC
Q 014741 251 PLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENL 302 (419)
Q Consensus 251 PLtPeEvgl~L~alGf~~~T~IYlA~geiyGG~~~L~pL~~~FPnl~tKe~L 302 (419)
++|-.+++-+|+-..|++ .+|..|+-++|++++++.-
T Consensus 39 ~~T~~Qv~~il~~f~fd~---------------~kl~~lk~l~p~i~D~~n~ 75 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFDN---------------DKLKALKLLYPYIVDPQNY 75 (95)
T ss_pred ceeHHHHHHHHHHcCCCH---------------HHHHHHHHHhhhccCHHHH
Confidence 499999999999998875 4799999999999999643
No 9
>PRK10556 hypothetical protein; Provisional
Probab=38.07 E-value=21 Score=31.12 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHhCCCCCcE
Q 014741 252 LTPEEAVLMLAALGFNRKTH 271 (419)
Q Consensus 252 LtPeEvgl~L~alGf~~~T~ 271 (419)
|-|.||+.+|..-||..+..
T Consensus 3 LRPDEVArVLe~aGF~~D~v 22 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDVV 22 (111)
T ss_pred cChHHHHHHHHhcCceEEEe
Confidence 67999999999999988754
No 10
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=35.98 E-value=19 Score=31.68 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHhCCCCCcE
Q 014741 252 LTPEEAVLMLAALGFNRKTH 271 (419)
Q Consensus 252 LtPeEvgl~L~alGf~~~T~ 271 (419)
|-|.||+.+|..-||..+..
T Consensus 3 lrpdeva~vle~~gf~~d~v 22 (111)
T PF09400_consen 3 LRPDEVARVLEKAGFERDYV 22 (111)
T ss_dssp --HHHHHHHHHHTT-EEEEE
T ss_pred cChHHHHHHHHhcCceEEEe
Confidence 67999999999999987753
No 11
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=32.62 E-value=43 Score=25.90 Aligned_cols=25 Identities=40% Similarity=0.450 Sum_probs=20.6
Q ss_pred hhhcCCCCCCCHHHHHHHHHHhCCCC
Q 014741 243 EIRSEGLCPLTPEEAVLMLAALGFNR 268 (419)
Q Consensus 243 ~~R~~G~CPLtPeEvgl~L~alGf~~ 268 (419)
-.+..|. .++++|+.-+|+.|||+-
T Consensus 11 i~~llG~-~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 11 INRLLGL-DLSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHHCC-CCCHHHHHHHHHHCCCeE
Confidence 3455665 499999999999999975
No 12
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=26.34 E-value=67 Score=28.80 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCCCcEEEEeec
Q 014741 255 EEAVLMLAALGFNRKTHVFVAGA 277 (419)
Q Consensus 255 eEvgl~L~alGf~~~T~IYlA~g 277 (419)
.+....-++||||..|.||.|--
T Consensus 80 ~~A~~~A~~lG~p~gt~IYfavD 102 (136)
T PF08924_consen 80 RDAVAAARALGFPAGTPIYFAVD 102 (136)
T ss_dssp HHHHHHHHHTT--SS-EEEEE--
T ss_pred HHHHHHHHHcCCCCCCEEEEEee
Confidence 34556778999999999999865
No 13
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=25.78 E-value=87 Score=34.92 Aligned_cols=53 Identities=13% Similarity=0.416 Sum_probs=40.3
Q ss_pred ccccchHHHHHHHhhCCCccHHHHHHHHHHHHHccccCCCCCCCCccccCCCCCCCCC
Q 014741 359 TIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMC 416 (419)
Q Consensus 359 Ti~Pdrk~l~~lf~~~~~~~w~~f~~~v~~~~~~~~~~~~r~~~~s~y~~P~~PeC~C 416 (419)
+.+-=|+.||+++. +.-+|+.|++..++.+....+...-+.+-++|.+- +|-|
T Consensus 377 nlKeIK~ELVpsli--~e~dWnsWsqkAK~ilKk~t~f~a~~s~~D~Yv~~---~~~~ 429 (711)
T COG1747 377 NLKEIKQELVPSLI--PEGDWNSWSQKAKKILKKSTRFAAPPSNKDPYVVR---SCGV 429 (711)
T ss_pred cHHHHHHHHHHhhC--ChhhhhHHHHHHHHHHhcCCcccCCCCCCCCeEeC---CCCc
Confidence 55556788998875 55689999999999999887766556666778776 5665
No 14
>COG4878 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.10 E-value=70 Score=32.76 Aligned_cols=57 Identities=23% Similarity=0.138 Sum_probs=45.6
Q ss_pred HHHHHHHhCCC-CCcEEEEeeceecCcccccchhHhhCCCccccccCCCcccccccccc
Q 014741 257 AVLMLAALGFN-RKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNF 314 (419)
Q Consensus 257 vgl~L~alGf~-~~T~IYlA~geiyGG~~~L~pL~~~FPnl~tKe~L~s~~EL~pf~~~ 314 (419)
++.++..|--. -+|.||++.+.| +-++.-..|.+-||++-|-.++.+.+|+.+|..-
T Consensus 93 L~~y~~~ls~~~y~~~vfVppSni-l~q~gk~alvk~~p~lktissiy~~deykd~~se 150 (309)
T COG4878 93 LADYGDILSITGYDTFVFVPPSNI-LLQKGKFALVKQAPSLKTISSIYNTDEYKDFNSE 150 (309)
T ss_pred HHHHHHHHhccccceEEEeCcccc-cchhHHHHHHHhCCCcceeeeEecccccCcccch
Confidence 34445554333 479999999998 5667788999999999999999999999999743
No 15
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=24.77 E-value=51 Score=26.00 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=18.3
Q ss_pred hhhcCCCCCCCHHHHHHHHHHhCCCCCc
Q 014741 243 EIRSEGLCPLTPEEAVLMLAALGFNRKT 270 (419)
Q Consensus 243 ~~R~~G~CPLtPeEvgl~L~alGf~~~T 270 (419)
-.+..|.. ++++|+.-+|+.|||.-.-
T Consensus 11 i~~~lG~~-i~~~~i~~~L~~lg~~~~~ 37 (70)
T PF03484_consen 11 INKLLGID-ISPEEIIKILKRLGFKVEK 37 (70)
T ss_dssp HHHHHTS----HHHHHHHHHHTT-EEEE
T ss_pred HHHHhCCC-CCHHHHHHHHHHCCCEEEE
Confidence 34556764 9999999999999997554
No 16
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=22.68 E-value=91 Score=30.07 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCCCcEEEEeecee
Q 014741 255 EEAVLMLAALGFNRKTHVFVAGAQI 279 (419)
Q Consensus 255 eEvgl~L~alGf~~~T~IYlA~gei 279 (419)
.+.--.-++||||..|.||+|--.-
T Consensus 92 ~~A~~~A~~lG~p~gs~IYfavD~d 116 (212)
T cd06418 92 RDAVAAARALGFPPGTIIYFAVDFD 116 (212)
T ss_pred HHHHHHHHHcCCCCCCEEEEEeecC
Confidence 3445577899999999999997653
No 17
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=22.48 E-value=74 Score=28.61 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEeecee
Q 014741 251 PLTPEEAVLMLAALGFNRKTHVFVAGAQI 279 (419)
Q Consensus 251 PLtPeEvgl~L~alGf~~~T~IYlA~gei 279 (419)
+++|+|..-+|+..||.+-+.-+++.|-+
T Consensus 125 f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 125 YLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred CcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 58999999999999999999988887753
No 18
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.24 E-value=44 Score=34.30 Aligned_cols=66 Identities=24% Similarity=0.380 Sum_probs=42.3
Q ss_pred hcceEEEeccCCcccCCCCchhhhhhhhhhcccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhc
Q 014741 102 RNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRG 181 (419)
Q Consensus 102 k~~Vi~l~~~~~rLa~~~~p~~iQrLRCrvnf~ALrF~~~I~~lg~~LV~RLr~~~~~~~~~~~~~~gpf~~~~~~~~~~ 181 (419)
+|-|+.|++.-...--..---.||| -|+...+|.+.|.+.+.-
T Consensus 184 eyPVLAf~gAPA~FPv~~e~~~lQk--------Yl~WS~r~~e~~k~fI~a----------------------------- 226 (386)
T KOG3849|consen 184 EYPVLAFSGAPAPFPVKGEVWSLQK--------YLRWSSRITEQAKKFISA----------------------------- 226 (386)
T ss_pred cCceeeecCCCCCCccccccccHHH--------HHHHHHHHHHHHHHHHHH-----------------------------
Confidence 3667777654332211111124666 378888888888777653
Q ss_pred ccccCCceEEEeechhhhhhhhccccC
Q 014741 182 QSAKASRYLAIHLRFEIDMVAHSLCEF 208 (419)
Q Consensus 182 ~~~~~~~ylAlHLRfE~DMlA~sgC~~ 208 (419)
.-+.||+++|||--.|++-- |.+
T Consensus 227 --~L~rpfvgiHLRng~DWvra--Ceh 249 (386)
T KOG3849|consen 227 --NLARPFVGIHLRNGADWVRA--CEH 249 (386)
T ss_pred --hcCcceeEEEeecCchHHHH--HHH
Confidence 12358999999999999964 874
No 19
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=22.18 E-value=78 Score=23.14 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=23.6
Q ss_pred ChHhhhcCCCCCCCHHHHHHHHHHhCCCCC
Q 014741 240 SPAEIRSEGLCPLTPEEAVLMLAALGFNRK 269 (419)
Q Consensus 240 ~~~~~R~~G~CPLtPeEvgl~L~alGf~~~ 269 (419)
|++.+..-..|. ||+|+--+.+..||.=+
T Consensus 16 d~~l~~~l~~~~-~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 16 DPELREQLKACQ-NPEEVVALAREAGYDFT 44 (49)
T ss_pred CHHHHHHHHhcC-CHHHHHHHHHHcCCCCC
Confidence 566666677784 99999999999999743
No 20
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.09 E-value=1.2e+02 Score=26.28 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHhCCCCCcE--EEEeece
Q 014741 252 LTPEEAVLMLAALGFNRKTH--VFVAGAQ 278 (419)
Q Consensus 252 LtPeEvgl~L~alGf~~~T~--IYlA~ge 278 (419)
|+||.++-+|+-|.-+.+|+ ||=+.|.
T Consensus 1 l~pe~a~plLrrL~~Pt~~RARlyd~dG~ 29 (112)
T PF13756_consen 1 LNPERARPLLRRLISPTRTRARLYDPDGN 29 (112)
T ss_pred CCHHHHHHHHHHhCCCCCceEEEECCCCC
Confidence 68999999999999999985 4445554
Done!