Query 014741
Match_columns 419
No_of_seqs 144 out of 379
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.4 1.8E-12 6.1E-17 131.1 12.9 283 2-359 36-386 (408)
2 3zy2_A Putative GDP-fucose pro 98.4 1.6E-06 5.6E-11 87.2 11.5 174 102-356 165-351 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 92.6 0.47 1.6E-05 49.9 10.2 83 265-352 335-420 (526)
4 2hhc_A NODZ, nodulation fucosy 81.5 4.7 0.00016 38.7 8.6 74 268-346 215-294 (330)
5 3zy2_A Putative GDP-fucose pro 57.4 3.3 0.00011 41.8 1.3 48 8-61 27-77 (362)
6 2g7j_A Putative cytoplasmic pr 36.1 14 0.00048 31.5 1.7 19 252-270 3-21 (124)
7 3l32_A Phosphoprotein; antipar 33.6 19 0.00065 26.0 1.7 22 135-156 2-23 (45)
8 1l2m_A REP protein; A+B fold, 31.9 48 0.0016 28.3 4.4 28 249-277 17-44 (118)
9 2eqr_A N-COR1, N-COR, nuclear 26.4 34 0.0012 25.3 2.2 19 246-264 9-27 (61)
10 1p3q_Q VPS9P, vacuolar protein 23.8 18 0.00063 27.0 0.2 14 284-297 14-27 (54)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.39 E-value=1.8e-12 Score=131.14 Aligned_cols=283 Identities=22% Similarity=0.196 Sum_probs=156.3
Q ss_pred cchhhHHHHHHHHHHHhcce----EeeccccCCCcccCC------CCCCCcCchHHHHHhccCCeEEeccCchhhhcc-c
Q 014741 2 NQQRVAICNAVVLARLLNAT----LVVPKFMYSSVWRDV------SQFSDIYQEEHFINYLTPDIRMVKELPNKLQSL-D 70 (419)
Q Consensus 2 NQqR~~IcDaVaVARlLNAT----LViP~l~~~s~w~D~------S~F~DIfD~dhFI~~L~~dVrIVk~LP~~~~~~-~ 70 (419)
|-||...=.|.++|+.||.| ||||-+..-.-|+-+ -.|++.||++.+ +..|+|+.. +++... .
T Consensus 36 n~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~vpVI~m--eeFl~~~~ 109 (408)
T 4ap5_A 36 NLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKNIPVIEY--EQFIAESG 109 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTTSCEEEH--HHHHHHSS
T ss_pred cHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----HhhCCeeEH--HHHHHHhC
Confidence 67899999999999999999 999977544456543 259999999864 445566532 222100 0
Q ss_pred hhhh-------------ccc----------c------cccCCCCCCChhHHHh-----------------hhhhhhhhc-
Q 014741 71 LEAI-------------GSV----------V------TDVDIPKESKPSFYLK-----------------NIIPILLRN- 103 (419)
Q Consensus 71 ~~~~-------------~~~----------~------~~~~~~~~s~~~~Y~~-----------------~vlP~l~k~- 103 (419)
+..+ ... + ...+.....++.|-.. .+-|.+.+.
T Consensus 110 ~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~~~~~~~~~~~~~~~ 189 (408)
T 4ap5_A 110 GPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPLLLRNT 189 (408)
T ss_dssp SSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEECSBGGGGHHHHHHCT
T ss_pred CCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEeecchhhhhhhhhcC
Confidence 0000 000 0 0000000011222111 122333332
Q ss_pred --ceEEEeccCCcccCCCCchhhhhhhhhhcccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchh------
Q 014741 104 --GVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSI------ 175 (419)
Q Consensus 104 --~Vi~l~~~~~rLa~~~~p~~iQrLRCrvnf~ALrF~~~I~~lg~~LV~RLr~~~~~~~~~~~~~~gpf~~~~------ 175 (419)
.-+-+..+...|+.-.-..+...+| ..|+|++.|.+.|+..++..-.. ++...+
T Consensus 190 ~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~-------------~~~~~h~r~~~d 251 (408)
T 4ap5_A 190 SARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNS-------------TDDADRIPFQED 251 (408)
T ss_dssp TCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCC-------------CTTTTTCCCCSS
T ss_pred ChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCc-------------ccceeecccchh
Confidence 2223333333443222223333322 47999999999999998876432 111111
Q ss_pred -hh-hhhcccccCCceEEEeechhhhhhhhccccCCCChhHHHHHHHHHHhhchhhhhcccCCCCCChHhhhcCCCCCCC
Q 014741 176 -MK-EKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLT 253 (419)
Q Consensus 176 -~~-~~~~~~~~~~~ylAlHLRfE~DMlA~sgC~~g~~~~E~~eL~~~R~~~~~~~~~~~~~~~~~~~~~~R~~G~CPLt 253 (419)
.. ........+++|+|+|+|-+.=+.+...|... ......
T Consensus 252 w~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps----~~~~~~---------------------------------- 293 (408)
T 4ap5_A 252 WMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPS----LEGAVR---------------------------------- 293 (408)
T ss_dssp GGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCC----HHHHHH----------------------------------
T ss_pred HhhhhcccccccCCCccccccccccchhhhhccCCC----HHHHHH----------------------------------
Confidence 00 01112234678999999976322333333211 111111
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeeceecCcccccchhHhhCCCccccccCCCccccccccccccccchhheeeeccCceee
Q 014741 254 PEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFA 333 (419)
Q Consensus 254 PeEvgl~L~alGf~~~T~IYlA~geiyGG~~~L~pL~~~FPnl~tKe~L~s~~EL~pf~~~ss~laALDy~Vc~~SDvFv 333 (419)
.+.-+++.. +-+.||||+-+. +..+.-|++.+|.++.-.. ..+++..+. ...+|.||-+||.+||+||
T Consensus 294 --~i~~~~~~~---~~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~~--d~~~a~idq~Ic~~a~~Fi 361 (408)
T 4ap5_A 294 --KIRSLMKTH---RLDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELYK--DGGVAIIDQWICAHARFFI 361 (408)
T ss_dssp --HHHHHHHHH---TCSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHHH--HHHHHHHHHHHHHTEEEEE
T ss_pred --HHHHHHHhc---CCCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhccC--cchhhHHHHHHHHhCCeeE
Confidence 111122222 334699998742 3446789999998764332 233444443 3457899999999999999
Q ss_pred ecCCCCchhhhhhhhhccccCCCCcc
Q 014741 334 MTDSGSQLSSLVSGYRIYYGGGKMPT 359 (419)
Q Consensus 334 ~t~~G~n~a~~v~GhR~y~G~~~~kT 359 (419)
+|.. |+|+..|.=.|-+.|+....|
T Consensus 362 Gt~~-StfS~~I~~eR~~~G~~~~~t 386 (408)
T 4ap5_A 362 GTSV-STFSFRIHEEREILGLDPKTT 386 (408)
T ss_dssp BCTT-CHHHHHHHHHHHHHTBCGGGT
T ss_pred eCCc-CchhHHHHHHHHhcCCCCCcc
Confidence 9985 479999999999999875434
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.38 E-value=1.6e-06 Score=87.18 Aligned_cols=174 Identities=17% Similarity=0.184 Sum_probs=109.2
Q ss_pred hcceEEEeccCCcccCCCCchhhhhhhhhhcccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhc
Q 014741 102 RNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRG 181 (419)
Q Consensus 102 k~~Vi~l~~~~~rLa~~~~p~~iQrLRCrvnf~ALrF~~~I~~lg~~LV~RLr~~~~~~~~~~~~~~gpf~~~~~~~~~~ 181 (419)
+|=|+.|++.-...--..---.||| -|+++++|.+.|++.|+.--
T Consensus 165 ~~pVlAf~gaPa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L--------------------------- 209 (362)
T 3zy2_A 165 EYPVLAFSSAPAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL--------------------------- 209 (362)
T ss_dssp TCSEEEESSCSSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC---------------------------
T ss_pred cCceEeecCCCCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc---------------------------
Confidence 4789999876433211111235665 58999999999999998732
Q ss_pred ccccCCceEEEeechhhhhhhhccccCC-CChhHHHHHHHHHHhhchhhhhcccCCCCCChHh---hhcCC-----CCCC
Q 014741 182 QSAKASRYLAIHLRFEIDMVAHSLCEFG-GGEEERQELEKYREIHFPALAHLKKTTKLPSPAE---IRSEG-----LCPL 252 (419)
Q Consensus 182 ~~~~~~~ylAlHLRfE~DMlA~sgC~~g-~~~~E~~eL~~~R~~~~~~~~~~~~~~~~~~~~~---~R~~G-----~CPL 252 (419)
++||||||||-=.|+.-. |.+- .+. .. + -.-++.- ....| .|==
T Consensus 210 ----~rpyVgIHLR~G~DW~~a--C~hlk~~~--------~~--~-----------lfaSPQC~Gy~~~~~~lt~emClP 262 (362)
T 3zy2_A 210 ----AKPFVAVHLRNDADWVRV--CEHIDTTT--------NR--P-----------LFASEQCLGEGHHLGTLTKEICSP 262 (362)
T ss_dssp ----CSSEEEEEECCCHHHHHH--HHTCCTTT--------CC--C-----------CTTTHHHHCGGGTTCCCCHHHHSC
T ss_pred ----CCCeEEEEEecCCcHHHH--Hhhhcccc--------Cc--c-----------cccCCcccCCcccCcccchhccCC
Confidence 238999999999999855 8751 110 00 0 0001100 00111 2322
Q ss_pred CHHHH----HHHHHHhCCCCCcEEEEeeceecCcccccchhHhhCCCccccccCCCccccccccccccccchhheeeecc
Q 014741 253 TPEEA----VLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTA 328 (419)
Q Consensus 253 tPeEv----gl~L~alGf~~~T~IYlA~geiyGG~~~L~pL~~~FPnl~tKe~L~s~~EL~pf~~~ss~laALDy~Vc~~ 328 (419)
+.+++ ..+++.+ +-..||||+-. ...+.-|+++|+....+ +.+ + ....|+||.+||.+
T Consensus 263 Sle~I~rqIk~~vk~~---~lksVFIATDa----~~~~~ELk~~L~~~~v~--vv~---~------~pe~a~ID~~I~~~ 324 (362)
T 3zy2_A 263 SKQQILEQIVEKVGSI---GAKSVFVASDK----DHMIDEINEALKPYEIE--AHR---Q------EPDDMYTSLAIMGR 324 (362)
T ss_dssp CHHHHHHHHHHHHHHH---TCSEEEEEESS----CCCHHHHHHHHGGGTCC--EEC---C------SSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc---CCcEEEEecCC----HHHHHHHHHHhhccCce--EEE---e------CCchhHHHHHHHHh
Confidence 33333 3445554 46789999975 34578899988752111 111 0 11289999999999
Q ss_pred CceeeecCCCCchhhhhhhhhccccCCC
Q 014741 329 ANAFAMTDSGSQLSSLVSGYRIYYGGGK 356 (419)
Q Consensus 329 SDvFv~t~~G~n~a~~v~GhR~y~G~~~ 356 (419)
||+||+|... .|+..|.-.|--.|...
T Consensus 325 A~~FIGN~~S-SFSa~I~rERdi~G~~~ 351 (362)
T 3zy2_A 325 ADLFVGNCVS-TFSHIVKRERDHAGQSP 351 (362)
T ss_dssp SSEEEECTTC-HHHHHHHHHHHHSSSSC
T ss_pred CCEeecCccc-cccHHHHHHHHhcCCCC
Confidence 9999999854 69999999999998544
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=92.64 E-value=0.47 Score=49.94 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=53.4
Q ss_pred CCCCCcEEEEeeceecCcccccchhHhhCCCc--cccccCCCccccc-cccccccccchhheeeeccCceeeecCCCCch
Q 014741 265 GFNRKTHVFVAGAQIYGGTRRLGALNSLYPYL--VTKENLLSATELE-PFKNFSSQLAALDFIGCTAANAFAMTDSGSQL 341 (419)
Q Consensus 265 Gf~~~T~IYlA~geiyGG~~~L~pL~~~FPnl--~tKe~L~s~~EL~-pf~~~ss~laALDy~Vc~~SDvFv~t~~G~n~ 341 (419)
..+..+.||||+.+. +.++-+++.||+. ++.........+. .+...+-.-+.+|.++.+++|+||.|.+. |+
T Consensus 335 ~~~~~~~ifLATDDp----~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS-~~ 409 (526)
T 2de0_X 335 MQVDKKRVYLATDDP----SLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSS-QV 409 (526)
T ss_dssp SCCSSCEEEEEESCH----HHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECTTS-HH
T ss_pred cCCCCCeEEEEcCCH----HHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCCCC-HH
Confidence 457789999999873 6677888899986 3222221111111 11000113478999999999999998754 68
Q ss_pred hhhhhhhhccc
Q 014741 342 SSLVSGYRIYY 352 (419)
Q Consensus 342 a~~v~GhR~y~ 352 (419)
+.++...+.-.
T Consensus 410 srla~~l~~~~ 420 (526)
T 2de0_X 410 CRVAYEIMQTL 420 (526)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhcCc
Confidence 88887766443
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=81.51 E-value=4.7 Score=38.72 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=43.5
Q ss_pred CCcEEEEeeceecCcccccchhHhhCCCccccc-cCCCc--cccc-ccccc-ccccchhheeeeccCceee-ecCCCCch
Q 014741 268 RKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKE-NLLSA--TELE-PFKNF-SSQLAALDFIGCTAANAFA-MTDSGSQL 341 (419)
Q Consensus 268 ~~T~IYlA~geiyGG~~~L~pL~~~FPnl~tKe-~L~s~--~EL~-pf~~~-ss~laALDy~Vc~~SDvFv-~t~~G~n~ 341 (419)
.++.||||+-+. ..++-|+++||+..+-. .+... ..+- +..+. ..+.+.+|.+.-+.+|.+| .+.. |+|
T Consensus 215 ~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~LLS~cd~~I~~~~~-STF 289 (330)
T 2hhc_A 215 KPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYLLARCATVIRFPPT-SAF 289 (330)
T ss_dssp SCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHHHHTTCSEEEEESTT-CGG
T ss_pred CceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHHHHHcCCeeEECCCC-CCH
Confidence 468999999985 46778999999843321 11100 0000 00001 2335889999999999999 3222 357
Q ss_pred hhhhh
Q 014741 342 SSLVS 346 (419)
Q Consensus 342 a~~v~ 346 (419)
+-..+
T Consensus 290 s~~aa 294 (330)
T 2hhc_A 290 TRYAR 294 (330)
T ss_dssp GHHHH
T ss_pred HHHHH
Confidence 76554
No 5
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=57.35 E-value=3.3 Score=41.83 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcceEeeccccCCCcccCCCC---CCCcCchHHHHHhccCCeEEecc
Q 014741 8 ICNAVVLARLLNATLVVPKFMYSSVWRDVSQ---FSDIYQEEHFINYLTPDIRMVKE 61 (419)
Q Consensus 8 IcDaVaVARlLNATLViP~l~~~s~w~D~S~---F~DIfD~dhFI~~L~~dVrIVk~ 61 (419)
.--+.+.|+.||.|||||-+-.=.. -.+. |++-|+++. |+..-|||.-
T Consensus 27 fLG~LafAk~lnRTLvlPpwi~y~~--~~~~~vpf~~yF~v~~----l~~yhrvi~m 77 (362)
T 3zy2_A 27 FLGVLAFAKALDRTLVLPNFIEFKH--PETKMIPFEFLFQVGT----VAKYTRVVTM 77 (362)
T ss_dssp HHHHHHHHHHHTCEEECCCEEECSS--SSCEEECHHHHBCHHH----HTTTSCEECH
T ss_pred HHHHHHHHHhhCceEecCccccccC--Ccccccchhheeecch----hhhhceeeeH
Confidence 4457899999999999998742221 2243 888888765 5556677654
No 6
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=36.10 E-value=14 Score=31.54 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHhCCCCCc
Q 014741 252 LTPEEAVLMLAALGFNRKT 270 (419)
Q Consensus 252 LtPeEvgl~L~alGf~~~T 270 (419)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 7799999999999998774
No 7
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=33.61 E-value=19 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.0
Q ss_pred ccccchhHHHHHHHHHHHHhcc
Q 014741 135 ALQFAPKIQETGALLLRRLRKH 156 (419)
Q Consensus 135 ALrF~~~I~~lg~~LV~RLr~~ 156 (419)
|+-|+.-+.++|.++|+||++.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtG 23 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSG 23 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHHHHHHHHHcc
Confidence 4568888999999999999973
No 8
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=31.95 E-value=48 Score=28.32 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeec
Q 014741 249 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 277 (419)
Q Consensus 249 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 277 (419)
.||||+||+...|+.|--+.+ ..||...
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~ 44 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeeh
Confidence 799999999999999875543 5565444
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.35 E-value=34 Score=25.31 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=17.0
Q ss_pred cCCCCCCCHHHHHHHHHHh
Q 014741 246 SEGLCPLTPEEAVLMLAAL 264 (419)
Q Consensus 246 ~~G~CPLtPeEvgl~L~al 264 (419)
.+...|.||+|..+|++++
T Consensus 9 r~~~~~WT~eE~~~F~~~~ 27 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKF 27 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHH
Confidence 3677899999999999998
No 10
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=23.83 E-value=18 Score=27.00 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.3
Q ss_pred cccchhHhhCCCcc
Q 014741 284 RRLGALNSLYPYLV 297 (419)
Q Consensus 284 ~~L~pL~~~FPnl~ 297 (419)
..+.-|++|||++-
T Consensus 14 ~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHSTTSC
T ss_pred HHHHHHHHHcccCC
Confidence 35778999999983
Done!