Query 014742
Match_columns 419
No_of_seqs 131 out of 1382
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 17:00:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o83_A Peptide arylation enzym 100.0 5.6E-44 1.9E-48 361.6 35.0 307 42-419 29-343 (544)
2 3g7s_A Long-chain-fatty-acid-- 100.0 1.9E-44 6.4E-49 365.6 31.3 319 34-419 10-339 (549)
3 3ni2_A 4-coumarate:COA ligase; 100.0 7.2E-45 2.5E-49 367.6 27.7 327 22-419 5-334 (536)
4 3rix_A Luciferase, luciferin 4 100.0 2.7E-44 9.2E-49 364.5 30.0 325 34-419 11-344 (550)
5 3r44_A Fatty acyl COA syntheta 100.0 6E-44 2.1E-48 359.2 29.8 306 40-419 13-319 (517)
6 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.6E-44 8.9E-49 363.6 27.1 304 42-419 24-334 (539)
7 1v25_A Long-chain-fatty-acid-C 100.0 4.6E-43 1.6E-47 354.6 35.8 308 42-419 17-328 (541)
8 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.4E-43 8.1E-48 353.9 29.5 297 42-419 1-308 (504)
9 3etc_A AMP-binding protein; ad 100.0 9.7E-43 3.3E-47 354.7 32.2 315 39-419 52-377 (580)
10 1ry2_A Acetyl-coenzyme A synth 100.0 4.1E-43 1.4E-47 362.5 28.5 323 42-419 81-423 (663)
11 1pg4_A Acetyl-COA synthetase; 100.0 4.6E-43 1.6E-47 361.9 28.5 323 42-419 75-417 (652)
12 2d1s_A Luciferase, luciferin 4 100.0 1.1E-42 3.7E-47 352.4 29.9 312 42-419 24-346 (548)
13 3c5e_A Acyl-coenzyme A synthet 100.0 5E-42 1.7E-46 348.9 33.8 312 40-419 35-358 (570)
14 3ivr_A Putative long-chain-fat 100.0 2.6E-42 9.1E-47 346.7 30.8 301 40-419 3-306 (509)
15 3t5a_A Long-chain-fatty-acid-- 100.0 5.9E-43 2E-47 349.0 25.8 310 41-419 22-353 (480)
16 3fce_A D-alanine--poly(phospho 100.0 7.2E-43 2.5E-47 351.1 23.8 291 43-419 1-298 (512)
17 2v7b_A Benzoate-coenzyme A lig 100.0 7.2E-42 2.5E-46 345.2 30.7 311 40-419 21-336 (529)
18 3rg2_A Enterobactin synthase c 100.0 1.5E-41 5.3E-46 348.7 32.7 307 41-419 25-338 (617)
19 4gr5_A Non-ribosomal peptide s 100.0 7.7E-42 2.6E-46 347.9 29.3 288 40-419 72-363 (570)
20 3e7w_A D-alanine--poly(phospho 100.0 5.5E-42 1.9E-46 344.5 27.8 290 43-419 1-297 (511)
21 4fuq_A Malonyl COA synthetase; 100.0 3.8E-42 1.3E-46 344.9 25.2 299 47-419 4-304 (503)
22 3tsy_A Fusion protein 4-coumar 100.0 7.7E-42 2.6E-46 368.3 27.8 335 19-419 41-381 (979)
23 4dg8_A PA1221; ANL superfamily 100.0 1.5E-41 5.2E-46 348.0 27.7 285 41-419 25-313 (620)
24 3kxw_A Saframycin MX1 syntheta 100.0 8E-42 2.7E-46 349.4 25.3 309 40-419 8-331 (590)
25 3l8c_A D-alanine--poly(phospho 100.0 3.4E-41 1.2E-45 339.6 27.9 291 42-419 3-301 (521)
26 3ipl_A 2-succinylbenzoate--COA 100.0 1.7E-41 5.7E-46 340.3 24.5 306 43-419 1-309 (501)
27 3gqw_A Fatty acid AMP ligase; 100.0 1.3E-40 4.3E-45 339.6 29.9 312 33-419 11-341 (576)
28 1amu_A GRSA, gramicidin synthe 100.0 2E-40 6.9E-45 336.6 27.0 286 42-419 38-327 (563)
29 3ite_A SIDN siderophore synthe 100.0 9.1E-40 3.1E-44 332.2 26.7 305 40-419 17-330 (562)
30 3nyq_A Malonyl-COA ligase; A/B 100.0 1.8E-39 6.3E-44 325.5 22.3 287 40-419 19-308 (505)
31 2vsq_A Surfactin synthetase su 100.0 3.8E-38 1.3E-42 347.9 32.9 291 41-419 462-757 (1304)
32 4gs5_A Acyl-COA synthetase (AM 99.9 5.9E-25 2E-29 210.3 8.4 148 219-419 36-183 (358)
33 3hgu_A EHPF; phenazine, antibi 99.9 4.5E-22 1.5E-26 191.3 14.5 155 217-419 88-269 (369)
34 3qov_A Phenylacetate-coenzyme 99.9 1.1E-21 3.6E-26 192.9 15.2 159 216-419 81-242 (436)
35 2y27_A Phenylacetate-coenzyme 99.9 2.4E-21 8E-26 190.5 17.7 160 215-419 85-246 (437)
36 2y4o_A Phenylacetate-coenzyme 99.9 3.5E-21 1.2E-25 189.6 16.7 159 216-419 88-248 (443)
37 2y27_A Phenylacetate-coenzyme 91.8 1 3.4E-05 43.1 10.8 125 57-184 89-222 (437)
38 2y4o_A Phenylacetate-coenzyme 91.7 0.99 3.4E-05 43.2 10.6 125 57-184 91-224 (443)
39 3qov_A Phenylacetate-coenzyme 91.7 0.89 3.1E-05 43.4 10.3 124 58-184 86-218 (436)
40 4eql_A 4-substituted benzoates 90.1 1.7 5.8E-05 43.2 10.6 30 218-247 91-121 (581)
41 3ipl_A 2-succinylbenzoate--COA 83.7 9.2 0.00032 37.0 11.9 123 56-184 161-286 (501)
42 3ivr_A Putative long-chain-fat 81.3 14 0.00049 35.7 12.2 99 218-328 19-119 (509)
43 3g7s_A Long-chain-fatty-acid-- 81.0 21 0.00071 35.0 13.4 105 219-328 33-140 (549)
44 3ni2_A 4-coumarate:COA ligase; 79.2 15 0.00052 35.8 11.7 102 218-329 35-138 (536)
45 3rix_A Luciferase, luciferin 4 79.2 5.9 0.0002 39.0 8.7 103 220-329 35-139 (550)
46 1v25_A Long-chain-fatty-acid-C 79.1 27 0.00092 34.1 13.5 101 219-327 32-134 (541)
47 3hgu_A EHPF; phenazine, antibi 76.4 6 0.0002 36.6 7.4 124 56-183 89-242 (369)
48 1t5h_X 4-chlorobenzoyl COA lig 75.4 30 0.001 33.4 12.4 99 218-326 15-117 (504)
49 2d1s_A Luciferase, luciferin 4 74.6 13 0.00045 36.4 9.7 123 58-184 192-321 (548)
50 1ry2_A Acetyl-coenzyme A synth 74.1 31 0.0011 34.8 12.5 100 218-322 95-196 (663)
51 1amu_A GRSA, gramicidin synthe 73.9 33 0.0011 33.7 12.5 96 218-325 52-149 (563)
52 3c5e_A Acyl-coenzyme A synthet 73.3 44 0.0015 32.8 13.3 104 218-327 56-161 (570)
53 1mdb_A 2,3-dihydroxybenzoate-A 72.4 35 0.0012 33.3 12.2 123 56-184 180-310 (539)
54 4fuq_A Malonyl COA synthetase; 71.7 27 0.00091 33.7 11.0 85 239-326 28-114 (503)
55 3t5a_A Long-chain-fatty-acid-- 70.9 46 0.0016 31.6 12.5 107 218-328 37-148 (480)
56 4dg8_A PA1221; ANL superfamily 70.5 32 0.0011 34.4 11.5 124 56-185 162-289 (620)
57 2v7b_A Benzoate-coenzyme A lig 69.0 26 0.0009 34.0 10.4 99 218-328 36-136 (529)
58 1pg4_A Acetyl-COA synthetase; 68.7 42 0.0014 33.7 12.0 98 219-322 90-189 (652)
59 4gs5_A Acyl-COA synthetase (AM 68.7 22 0.00076 32.6 9.3 127 49-183 28-159 (358)
60 3etc_A AMP-binding protein; ad 68.1 36 0.0012 33.6 11.2 98 218-322 69-168 (580)
61 3fce_A D-alanine--poly(phospho 68.0 28 0.00096 33.6 10.3 123 57-184 143-273 (512)
62 4gr5_A Non-ribosomal peptide s 67.6 41 0.0014 33.0 11.5 94 218-323 88-183 (570)
63 3r44_A Fatty acyl COA syntheta 67.4 34 0.0012 33.1 10.8 100 218-327 29-130 (517)
64 3o83_A Peptide arylation enzym 65.5 43 0.0015 32.6 11.2 93 218-322 43-137 (544)
65 3e7w_A D-alanine--poly(phospho 65.4 33 0.0011 33.1 10.2 122 57-183 142-271 (511)
66 3tsy_A Fusion protein 4-coumar 62.1 43 0.0015 35.5 11.1 100 218-327 74-175 (979)
67 3kxw_A Saframycin MX1 syntheta 61.6 73 0.0025 31.2 12.1 102 218-327 24-130 (590)
68 3tbh_A O-acetyl serine sulfhyd 61.1 46 0.0016 30.2 9.7 66 93-158 61-127 (334)
69 3l8c_A D-alanine--poly(phospho 59.9 52 0.0018 31.7 10.6 81 238-321 28-110 (521)
70 3vc3_A Beta-cyanoalnine syntha 56.5 65 0.0022 29.4 9.9 71 88-158 72-142 (344)
71 3rg2_A Enterobactin synthase c 54.9 81 0.0028 31.2 11.2 123 57-185 183-315 (617)
72 3ezx_A MMCP 1, monomethylamine 53.8 56 0.0019 27.5 8.4 43 276-318 104-149 (215)
73 3gqw_A Fatty acid AMP ligase; 53.4 94 0.0032 30.2 11.3 87 238-327 48-143 (576)
74 3ite_A SIDN siderophore synthe 48.9 1.4E+02 0.0048 28.9 11.7 100 218-322 33-136 (562)
75 4eez_A Alcohol dehydrogenase 1 48.2 51 0.0017 29.8 7.8 77 78-157 137-216 (348)
76 4b2g_A GH3-1 auxin conjugating 45.0 4.4 0.00015 40.4 -0.1 30 218-247 97-127 (609)
77 3nyq_A Malonyl-COA ligase; A/B 43.7 1.6E+02 0.0055 28.1 11.0 103 56-165 153-259 (505)
78 4epl_A Jasmonic acid-amido syn 40.7 6.3 0.00022 39.0 0.3 30 218-247 96-126 (581)
79 1z7w_A Cysteine synthase; tran 40.3 1.6E+02 0.0055 26.3 9.8 65 94-158 57-122 (322)
80 4aec_A Cysteine synthase, mito 39.3 1.6E+02 0.0054 27.8 9.7 64 94-157 165-229 (430)
81 3ju7_A Putative PLP-dependent 39.1 89 0.003 28.6 8.0 61 93-156 69-136 (377)
82 2q3b_A Cysteine synthase A; py 37.6 2E+02 0.0067 25.5 9.9 65 93-158 57-122 (313)
83 3jv7_A ADH-A; dehydrogenase, n 35.9 1.5E+02 0.0052 26.6 9.0 63 93-158 161-225 (345)
84 1o69_A Aminotransferase; struc 34.5 1.8E+02 0.0062 26.5 9.4 61 94-157 64-130 (394)
85 2egu_A Cysteine synthase; O-ac 34.0 2.2E+02 0.0075 25.1 9.6 65 93-158 55-120 (308)
86 1ofu_X SULA, hypothetical prot 33.1 1.5E+02 0.0053 22.2 7.0 53 91-143 47-101 (119)
87 1eg5_A Aminotransferase; PLP-d 33.1 1.6E+02 0.0055 26.3 8.8 56 100-156 87-146 (384)
88 3s2e_A Zinc-containing alcohol 32.7 1.5E+02 0.0051 26.5 8.4 76 78-157 140-218 (340)
89 1h2b_A Alcohol dehydrogenase; 32.6 1.5E+02 0.0052 26.8 8.4 63 93-158 176-240 (359)
90 3tqh_A Quinone oxidoreductase; 32.1 1.5E+02 0.0053 26.2 8.2 75 78-157 126-204 (321)
91 4h1h_A LMO1638 protein; MCCF-l 31.4 81 0.0028 28.5 6.1 61 98-158 8-87 (327)
92 3dwg_A Cysteine synthase B; su 31.1 2.8E+02 0.0097 24.7 9.8 64 94-158 64-128 (325)
93 2pqm_A Cysteine synthase; OASS 30.5 2.3E+02 0.0079 25.5 9.2 63 95-158 70-133 (343)
94 3ri6_A O-acetylhomoserine sulf 30.4 2.1E+02 0.0073 26.7 9.2 62 106-167 100-164 (430)
95 3ist_A Glutamate racemase; str 30.2 1.5E+02 0.0051 25.9 7.5 61 48-115 20-80 (269)
96 1ve1_A O-acetylserine sulfhydr 29.0 2.9E+02 0.01 24.2 10.3 65 94-158 51-117 (304)
97 3sr3_A Microcin immunity prote 28.9 1E+02 0.0034 28.1 6.3 61 98-158 9-88 (336)
98 1y80_A Predicted cobalamin bin 27.8 2.1E+02 0.0072 23.5 7.9 55 104-158 90-148 (210)
99 2e7j_A SEP-tRNA:Cys-tRNA synth 27.8 3.1E+02 0.011 24.2 9.8 56 99-157 90-155 (371)
100 3dzz_A Putative pyridoxal 5'-p 27.7 2E+02 0.0069 25.8 8.5 56 99-157 106-168 (391)
101 1mdo_A ARNB aminotransferase; 27.2 1.7E+02 0.0058 26.4 7.9 56 97-156 74-134 (393)
102 3two_A Mannitol dehydrogenase; 27.0 1.8E+02 0.0063 26.0 7.9 73 78-154 150-225 (348)
103 1zsy_A Mitochondrial 2-enoyl t 26.9 2.3E+02 0.0077 25.6 8.5 78 78-156 140-223 (357)
104 1oft_A SULA, hypothetical prot 26.0 2E+02 0.0067 23.0 6.7 53 91-143 89-143 (161)
105 3tla_A MCCF; serine protease, 26.0 1.1E+02 0.0039 28.2 6.1 61 98-158 39-118 (371)
106 4a2c_A Galactitol-1-phosphate 25.7 2.4E+02 0.0082 25.1 8.4 63 93-158 152-214 (346)
107 3a2b_A Serine palmitoyltransfe 25.6 3.7E+02 0.013 24.2 10.1 56 99-158 124-182 (398)
108 4e5s_A MCCFLIKE protein (BA_56 25.5 1.2E+02 0.0041 27.5 6.1 61 98-158 8-87 (331)
109 3b8x_A WBDK, pyridoxamine 5-ph 25.3 2.8E+02 0.0096 25.0 9.0 55 98-156 76-135 (390)
110 2jfz_A Glutamate racemase; cel 25.1 1E+02 0.0034 26.6 5.4 57 48-110 15-71 (255)
111 3l6b_A Serine racemase; pyrido 24.7 1.7E+02 0.0058 26.5 7.1 56 102-158 76-131 (346)
112 3isl_A Purine catabolism prote 24.1 2.8E+02 0.0095 25.1 8.8 58 99-157 83-144 (416)
113 1t3i_A Probable cysteine desul 24.1 2.5E+02 0.0084 25.5 8.4 16 236-251 238-253 (420)
114 2vsq_A Surfactin synthetase su 23.8 2.7E+02 0.0092 30.5 9.6 82 239-323 489-572 (1304)
115 2gzm_A Glutamate racemase; enz 23.8 1.5E+02 0.005 25.8 6.2 58 47-110 17-74 (267)
116 2jtq_A Phage shock protein E; 23.7 1.6E+02 0.0053 20.0 5.3 46 76-128 22-67 (85)
117 3fpc_A NADP-dependent alcohol 23.3 1.7E+02 0.0057 26.4 6.8 60 93-156 158-218 (352)
118 1uuf_A YAHK, zinc-type alcohol 23.2 2E+02 0.0067 26.2 7.3 61 92-156 185-245 (369)
119 1elu_A L-cysteine/L-cystine C- 22.6 2.3E+02 0.008 25.3 7.8 13 236-248 228-240 (390)
120 4hvk_A Probable cysteine desul 22.5 1.5E+02 0.0052 26.4 6.5 32 101-132 87-118 (382)
121 3ndn_A O-succinylhomoserine su 22.5 3.7E+02 0.013 24.8 9.3 14 234-247 235-248 (414)
122 1zjc_A Aminopeptidase AMPS; me 22.4 1.7E+02 0.0056 27.6 6.6 50 83-132 7-60 (418)
123 2ch1_A 3-hydroxykynurenine tra 22.2 3.3E+02 0.011 24.4 8.8 57 99-156 90-150 (396)
124 3kki_A CAI-1 autoinducer synth 21.9 1.7E+02 0.0056 26.8 6.7 55 99-157 140-194 (409)
125 2z9v_A Aspartate aminotransfer 21.7 3E+02 0.01 24.6 8.4 58 99-157 80-142 (392)
126 2cf5_A Atccad5, CAD, cinnamyl 21.7 2.5E+02 0.0086 25.3 7.7 62 93-157 171-233 (357)
127 1kmj_A Selenocysteine lyase; p 21.5 2.8E+02 0.0096 24.9 8.2 15 236-250 233-247 (406)
128 2ayi_A Aminopeptidase T; metal 21.5 2.3E+02 0.0078 26.5 7.4 49 84-132 5-57 (408)
129 3a2k_A TRNA(Ile)-lysidine synt 21.4 4.5E+02 0.015 24.8 9.7 70 89-158 4-87 (464)
130 4b7c_A Probable oxidoreductase 21.3 3.6E+02 0.012 23.8 8.7 59 95-156 143-202 (336)
131 3ujp_A Mn transporter subunit; 21.2 1.1E+02 0.0038 27.3 5.0 89 80-170 165-260 (307)
132 1zuw_A Glutamate racemase 1; ( 21.2 1.7E+02 0.0058 25.5 6.1 58 47-110 17-75 (272)
133 1pl8_A Human sorbitol dehydrog 21.1 2.5E+02 0.0085 25.2 7.6 75 78-157 146-224 (356)
134 3zrp_A Serine-pyruvate aminotr 20.9 3.5E+02 0.012 24.0 8.6 58 99-157 74-135 (384)
135 1b9h_A AHBA synthase, protein 20.8 2.9E+02 0.0099 24.8 8.1 57 94-154 70-131 (388)
136 1y7l_A O-acetylserine sulfhydr 20.8 4.3E+02 0.015 23.2 9.6 64 94-158 53-117 (316)
137 1e5e_A MGL, methionine gamma-l 20.6 3.8E+02 0.013 24.5 8.9 19 232-250 214-234 (404)
138 1d2f_A MALY protein; aminotran 20.5 4.6E+02 0.016 23.4 9.6 54 100-156 109-169 (390)
139 1gu7_A Enoyl-[acyl-carrier-pro 20.4 2.8E+02 0.0095 24.9 7.8 79 78-157 139-224 (364)
140 4eb5_A Probable cysteine desul 20.3 1.5E+02 0.0052 26.5 5.9 18 384-403 345-362 (382)
141 2c81_A Glutamine-2-deoxy-scyll 20.2 1.9E+02 0.0064 26.6 6.7 35 96-133 76-110 (418)
142 2z61_A Probable aspartate amin 20.2 3.6E+02 0.012 24.0 8.5 21 232-252 227-247 (370)
143 4ej6_A Putative zinc-binding d 20.2 2.6E+02 0.009 25.3 7.6 59 94-156 175-234 (370)
144 2cb1_A O-acetyl homoserine sul 20.1 3.5E+02 0.012 24.7 8.6 12 100-111 93-104 (412)
145 3frk_A QDTB; aminotransferase, 20.1 1.7E+02 0.0056 26.4 6.1 37 94-133 68-104 (373)
No 1
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=5.6e-44 Score=361.63 Aligned_cols=307 Identities=14% Similarity=0.144 Sum_probs=256.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|..+++.+||++|+++. + +.+||.||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999964 3 6899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh----hHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999986531 111222222344555666554321
Q ss_pred eeeHHHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChH
Q 014742 198 CFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (419)
Q Consensus 198 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (419)
...+.++.... ..........++++++|+|||||||.||||+++|+++...+......+ ++.++|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 12344444433 222222455689999999999999999999999999999999877776 888999999999999
Q ss_pred HHHHHHH--HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhh
Q 014742 277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (419)
Q Consensus 277 h~~g~~~--~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (419)
|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++..
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------- 299 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKA----------------------- 299 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHH-----------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhch-----------------------
Confidence 9999984 7788999999999987 9999999999999999999999999987631
Q ss_pred hhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.....++ ++||.+++||+++++++.+++++.+|+++++.||+||
T Consensus 300 --------------~~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 343 (544)
T 3o83_A 300 --------------AQYKDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAE 343 (544)
T ss_dssp --------------TTTHHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTT
T ss_pred --------------hhccccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeecccc
Confidence 1122234 3999999999999999999999999999999999998
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.9e-44 Score=365.59 Aligned_cols=319 Identities=20% Similarity=0.231 Sum_probs=266.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCC--CCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC
Q 014742 34 GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDG--KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSN 111 (419)
Q Consensus 34 ~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n 111 (419)
..|..+.+..++.++|.++++.+||++|+++. ++ ..+..+++||.||.++++++|++|++.|+++||+|+++++|
T Consensus 10 ~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 86 (549)
T 3g7s_A 10 GFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPN 86 (549)
T ss_dssp CCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred CCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 34556677889999999999999999999986 42 12334689999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHH
Q 014742 112 CPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191 (419)
Q Consensus 112 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (419)
+++++++++||+++|++++|+++.++.+++.++++.++++++|++....+.+....... ....+++.+..
T Consensus 87 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 87 SIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE-------- 156 (549)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS--------
T ss_pred CHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC--------
Confidence 99999999999999999999999999999999999999999999998777665544322 34556655432
Q ss_pred HHhCceeeeHHHHHhcCCCCCCCCCCCC-CceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEE
Q 014742 192 EELGVSCFSWEEFLQLGTLDCELPPKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 270 (419)
..++.++..............+ +++++|+|||||||.||||+++|+++.+.+......+ ++.++|+++
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~ 225 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIV 225 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEE
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEE
Confidence 3356666655422223333334 8999999999999999999999999999998877777 888999999
Q ss_pred EecChHHHHHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHH
Q 014742 271 SFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAY 349 (419)
Q Consensus 271 ~~~pl~h~~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (419)
+.+|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|.++..|++.......
T Consensus 226 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------- 291 (549)
T 3g7s_A 226 GCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK-------------- 291 (549)
T ss_dssp CCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------
T ss_pred EeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------
Confidence 99999999999888888999999999977 999999999999999999999999999764332100
Q ss_pred HhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh----hC---CceeeeccCCC
Q 014742 350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG---APLTQGYGMVE 419 (419)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~----~~---~~v~~~YG~tE 419 (419)
..++ +++|.+++||+++++++.+++.+. ++ +++++.||+||
T Consensus 292 ---------------------~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE 339 (549)
T 3g7s_A 292 ---------------------TYDW--------SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTE 339 (549)
T ss_dssp ---------------------CCCC--------TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGG
T ss_pred ---------------------cCCc--------cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccc
Confidence 0011 389999999999999999999988 66 89999999998
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=7.2e-45 Score=367.56 Aligned_cols=327 Identities=20% Similarity=0.263 Sum_probs=265.4
Q ss_pred CCcceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCC
Q 014742 22 GGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101 (419)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~ 101 (419)
+..++++......+|. ..++.++|.++++.+||++|+++. +++ +.+||.||.++++++|++|++.|+++
T Consensus 5 ~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~ 73 (536)
T 3ni2_A 5 EEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQ 73 (536)
T ss_dssp CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCT
T ss_pred cceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCC
Confidence 4456666654433332 588999999999999999999864 222 58999999999999999999999999
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEec
Q 014742 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA 181 (419)
Q Consensus 102 gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (419)
||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++....+.+.+..... .. .++.++
T Consensus 74 gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~~ 150 (536)
T 3ni2_A 74 GDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCVD 150 (536)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEESS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEec
Confidence 999999999999999999999999999999999999999999999999999999987766554433221 12 344444
Q ss_pred CCChhhHHHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCc
Q 014742 182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK 261 (419)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~ 261 (419)
.... ....+.++........+.....++++++|+|||||||.||||+++|+++.+.+....... ....
T Consensus 151 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~ 218 (536)
T 3ni2_A 151 SAPD-----------GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NPNL 218 (536)
T ss_dssp CCCT-----------TCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SCSS
T ss_pred CCCC-----------CccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-cccc
Confidence 3211 245566666544333344456789999999999999999999999999998776543211 0112
Q ss_pred cCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCc
Q 014742 262 VCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339 (419)
Q Consensus 262 ~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 339 (419)
.+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|.++..+++
T Consensus 219 ~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~----------- 287 (536)
T 3ni2_A 219 YFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK----------- 287 (536)
T ss_dssp CCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHT-----------
T ss_pred cCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHh-----------
Confidence 5778999999999999999976 7889999999999977 99999999999999999999999999865
Q ss_pred hHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCC
Q 014742 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMV 418 (419)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~t 418 (419)
.+..+..++ ++||.+++||+++++++.+++++.+ ++++++.||+|
T Consensus 288 --------------------------~~~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~T 333 (536)
T 3ni2_A 288 --------------------------SPDLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMT 333 (536)
T ss_dssp --------------------------CSCGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECG
T ss_pred --------------------------CcccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCcccccccc
Confidence 111122223 3899999999999999999999998 89999999999
Q ss_pred C
Q 014742 419 E 419 (419)
Q Consensus 419 E 419 (419)
|
T Consensus 334 E 334 (536)
T 3ni2_A 334 E 334 (536)
T ss_dssp G
T ss_pred c
Confidence 8
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.7e-44 Score=364.49 Aligned_cols=325 Identities=19% Similarity=0.258 Sum_probs=259.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCch
Q 014742 34 GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP 113 (419)
Q Consensus 34 ~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~ 113 (419)
..|..+.+..|+.++|.+.++++|+++|++... ++.. .+.+||+||.++++++|++|++.|+++||+|+++++|++
T Consensus 11 ~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~ 86 (550)
T 3rix_A 11 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL 86 (550)
T ss_dssp CCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT
T ss_pred CCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc
Confidence 345666778999999999999999999986220 1111 158999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHH
Q 014742 114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (419)
Q Consensus 114 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (419)
+++++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+..... ..+.+..++.++.....
T Consensus 87 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 158 (550)
T 3rix_A 87 QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDY------- 158 (550)
T ss_dssp TTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCB-------
T ss_pred cHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCccc-------
Confidence 9999999999999999999999999999999999999999999987766654432 23456677776654221
Q ss_pred hCceeeeHHHHHhcC-CC------CCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCC
Q 014742 194 LGVSCFSWEEFLQLG-TL------DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266 (419)
Q Consensus 194 ~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~ 266 (419)
....++.++.... .. ..+.....++++++|+|||||||.||||+++|+++...+......+ ...++.++
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~ 234 (550)
T 3rix_A 159 --QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPD 234 (550)
T ss_dssp --TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTT
T ss_pred --cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCC
Confidence 1244566655433 11 1112222457899999999999999999999999998877654431 11367789
Q ss_pred cEEEEecChHHHHHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHH
Q 014742 267 DTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345 (419)
Q Consensus 267 d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (419)
|++++.+|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++.
T Consensus 235 ~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------- 298 (550)
T 3rix_A 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS---------------- 298 (550)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC----------------
T ss_pred cEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC----------------
Confidence 999999999999999888889999999999877 999999999999999999999999998751
Q ss_pred HHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCc-eeeeccCCC
Q 014742 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGMVE 419 (419)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~tE 419 (419)
...+..++ ++||.+++||+++++++.+++++.++.. +++.||+||
T Consensus 299 ---------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE 344 (550)
T 3rix_A 299 ---------------------TLIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344 (550)
T ss_dssp ---------------------CGGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGG
T ss_pred ---------------------ccccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCc
Confidence 11222223 3899999999999999999999999876 999999998
No 5
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=6e-44 Score=359.17 Aligned_cols=306 Identities=21% Similarity=0.248 Sum_probs=250.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....|+.++|.++++.+||++|+++. +.. .++||.||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 44788999999999999999999875 321 58999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++.++.+++.++++.++++++|++......+....... .....++.... ..
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999987665543332211 11111111110 01
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
.+.+.........+.....++++++|+|||||||.||||++||+++.+.+......+ +++.+|++++.+|++|.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 224 (517)
T 3r44_A 150 SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHVA 224 (517)
T ss_dssp HHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSHH
T ss_pred cHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHHH
Confidence 233444333333344456789999999999999999999999999999998877766 888999999999999999
Q ss_pred HHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhcc
Q 014742 280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (419)
Q Consensus 280 g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (419)
++...+.+++.|+++++.+. ++..+++.|.++++|++.++|+++..+.+.
T Consensus 225 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------------------- 275 (517)
T 3r44_A 225 ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV----------------------------- 275 (517)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHS-----------------------------
T ss_pred HHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhC-----------------------------
Confidence 99875555559999999877 999999999999999999999999998652
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+.....++ ++||.+++||+++++++.+.+.+. ++++++.||+||
T Consensus 276 --------~~~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE 319 (517)
T 3r44_A 276 --------PEFAELDA--------PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTE 319 (517)
T ss_dssp --------HHHHHCCC--------TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGG
T ss_pred --------cccccCCC--------CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccc
Confidence 11222222 389999999999999999999997 999999999998
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.6e-44 Score=363.64 Aligned_cols=304 Identities=17% Similarity=0.181 Sum_probs=251.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|.+.++.+||++|+++. + +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 2 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh----hHhhcCccCCCCccEEEEecCCChhhHHHHHHhCce
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (419)
|+++|++++|+++.++.+++.++++.++++++|++..... ..........+.++.+++.++...
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence 9999999999999999999999999999999999875321 111111111234444554443210
Q ss_pred eeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHH
Q 014742 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (419)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (419)
+.++..............++++++++|||||||.||||+++|+++.+.+......+ +++++|++++.+|++|
T Consensus 163 ---~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h 234 (539)
T 1mdb_A 163 ---FLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (539)
T ss_dssp ---SEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred ---hhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeecccc
Confidence 11121211111123345678999999999999999999999999999988877766 7889999999999999
Q ss_pred HHHHHH--HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 278 ~~g~~~--~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.+++.. ++.+|..|+++++.+. ++..+++.|+++++|++.++|+++..+++.....
T Consensus 235 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------- 293 (539)
T 1mdb_A 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR--------------------- 293 (539)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC---------------------
T ss_pred cchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc---------------------
Confidence 999974 7889999999999877 9999999999999999999999999987632210
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
..++ ++||.+++||+++++++.++|++.+|+++++.||+||
T Consensus 294 ----------------~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 334 (539)
T 1mdb_A 294 ----------------RDDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE 334 (539)
T ss_dssp ----------------CCCC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTT
T ss_pred ----------------CCCc--------cceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCC
Confidence 0112 3899999999999999999999989999999999998
No 7
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=4.6e-43 Score=354.65 Aligned_cols=308 Identities=23% Similarity=0.293 Sum_probs=254.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|.+.++.+||++|+.+. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999863 21 2236899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++.+..+.+..... ..+.++.++++++... .....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHh-hCCCccEEEEecCCCC----------cccccH
Confidence 99999999999999999999999999999999999877665544332 2344556666654321 013456
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhh--hhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV--DQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
+++...... .....++++++|+|||||||.||||++||+++...+... ...+ +++++|++++.+|++|.+
T Consensus 161 ~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~ 232 (541)
T 1v25_A 161 EEALGEEAD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVN 232 (541)
T ss_dssp HHHCCSCCC---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHH
T ss_pred HHHhhccCC---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhh
Confidence 665443311 134467899999999999999999999999998776542 2223 678899999999999999
Q ss_pred HHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 280 DQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 280 g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.....
T Consensus 233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 288 (541)
T 1v25_A 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST------------------------ 288 (541)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc------------------------
Confidence 98777888999999999864 9999999999999999999999999987643211
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
..++ ++||.+++||+++++++.++| +.+|+++++.||+||
T Consensus 289 -------------~~~l--------~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE 328 (541)
T 1v25_A 289 -------------GHRL--------KTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTE 328 (541)
T ss_dssp -------------TCCC--------SSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGG
T ss_pred -------------CCcc--------hhccEEEECCCCCCHHHHHHH-HHhCCceeecccccc
Confidence 0011 389999999999999999999 557999999999998
No 8
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.4e-43 Score=353.89 Aligned_cols=297 Identities=18% Similarity=0.223 Sum_probs=240.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
++|+.++|.+.++.+||++|+.+. +++ +++||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999864 222 6899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEE--eCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV--QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
|+++|++++|+++.++.+++.++++.++++++|+ +....+.+.... ...+ ++.
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~-------------------- 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF-------------------- 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE--------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE--------------------
Confidence 9999999999999999999999999999999999 665444331211 1111 222
Q ss_pred eHHHHHhcC-----CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccC--CCCcEEEEe
Q 014742 200 SWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSF 272 (419)
Q Consensus 200 ~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 272 (419)
++++.... ..........++++++|+|||||||.||||+++|+++.+.+......+ ++ .++|++++.
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 129 -LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp -GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred -ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 22221110 111112345678999999999999999999999999998888766555 56 788999999
Q ss_pred cChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q 014742 273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (419)
Q Consensus 273 ~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (419)
+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.....
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------- 265 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA----------------- 265 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence 99999999864 8889999999999987 9999999999999999999999999987631100
Q ss_pred hhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+..++ ++||.+++||+++++++.++|++.++.++++.||+||
T Consensus 266 ------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 308 (504)
T 1t5h_X 266 ------------------GSSLKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTE 308 (504)
T ss_dssp ------------------TCCCCC--------TTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETT
T ss_pred ------------------cccccC--------ccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccc
Confidence 000011 3899999999999999999999999999999999998
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=9.7e-43 Score=354.71 Aligned_cols=315 Identities=15% Similarity=0.170 Sum_probs=255.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHH
Q 014742 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (419)
Q Consensus 39 ~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~ 118 (419)
|..++...++|+.+++.+||++|+++. +. .+..+.+||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~ 127 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC 127 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 344555669999999999999999975 32 23447899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCCh--hhHhhcCccCCCCc-cEEEEecCCChhhHHHHHHhC
Q 014742 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELG 195 (419)
Q Consensus 119 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 195 (419)
++||+++|++++|+++.++.+++.++++.+++++||++.+.. ..+...... .+.+ ..++.++....
T Consensus 128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------- 196 (580)
T 3etc_A 128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAE-CGDIPLKKAKVGGDVL---------- 196 (580)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHH-HCSCCCEEEEESSSCC----------
T ss_pred HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhh-CCCcceEEEEeCCccc----------
Confidence 999999999999999999999999999999999999998764 333332222 1233 44455543211
Q ss_pred ceeeeHHHHHhcCCCCCC-C---CCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEE
Q 014742 196 VSCFSWEEFLQLGTLDCE-L---PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271 (419)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (419)
..+.++.+.......... . ....++++++|+|||||||.||||.++|.++...+......+ ++.+++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 271 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT 271 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence 124566666654422111 1 245789999999999999999999999999888776644444 7888999999
Q ss_pred ecChHHHHHHHH-HHHHHhcCceEEEeC--C-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHH
Q 014742 272 FLPLAHIYDQII-ETHCIHKGCSIGFWR--G-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (419)
Q Consensus 272 ~~pl~h~~g~~~-~l~~l~~G~~ivl~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (419)
..|++|..++.. ++.++..|+++++.+ . ++..+++.|+++++|+++++|++++.|.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------------------ 333 (580)
T 3etc_A 272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE------------------ 333 (580)
T ss_dssp CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS------------------
T ss_pred eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc------------------
Confidence 999999888876 778899999999873 3 999999999999999999999999988641
Q ss_pred HHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.....++ ++||.+++||+++++++.++|++.+|+++++.||+||
T Consensus 334 --------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE 377 (580)
T 3etc_A 334 --------------------DLSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTE 377 (580)
T ss_dssp --------------------CC---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTT
T ss_pred --------------------ccccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEeccccccc
Confidence 0112223 3899999999999999999999999999999999998
No 10
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4.1e-43 Score=362.48 Aligned_cols=323 Identities=18% Similarity=0.252 Sum_probs=257.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
.+++.++|+++++.+||++|+++. +.+.+..+++||.||.++++++|+.|+ +.|+++||+|+++++|++++++++|
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 467889999999999999999986 333344578999999999999999999 9999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh---------hHhhcCccCCCCccEEEEecCCChhhHHHH
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQKKEA 191 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (419)
||+++|++++|+++.++.+++.++++.+++++||+++.... .+.+... ..+.++.+++++.........
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~- 235 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR-ETPGVRHVLVYRKTNNPSVAF- 235 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTT-SCTTCCEEEEECSSCCSSCCC-
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHH-hCCCCceEEEEecCCCCcccc-
Confidence 99999999999999999999999999999999999876532 1222222 223456677765421100000
Q ss_pred HHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhh-hhhhhhhcCccCCCCcEEE
Q 014742 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l 270 (419)
.......|.++........+.....++++++|+|||||||.||||+++|+++...+.. ....+ ++.++|+++
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 308 (663)
T 1ry2_A 236 --HAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF 308 (663)
T ss_dssp --CSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred --CCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence 0012346777765443223334556899999999999999999999999998866643 33334 788899999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHH
Q 014742 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (419)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (419)
+..|++|.+++.. ++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.|.+..
T Consensus 309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-------------- 374 (663)
T 1ry2_A 309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG-------------- 374 (663)
T ss_dssp ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC--------------
T ss_pred EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcC--------------
Confidence 9999999999965 7899999999999863 7899999999999999999999999885410
Q ss_pred HHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC---CceeeeccCCC
Q 014742 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGMVE 419 (419)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE 419 (419)
....+..++ ++||.+++||+++++++++++.+.+| +++++.||+||
T Consensus 375 ---------------------~~~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 423 (663)
T 1ry2_A 375 ---------------------DSYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE 423 (663)
T ss_dssp ---------------------TTSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred ---------------------ccccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcc
Confidence 000111122 38999999999999999999999888 89999999998
No 11
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=4.6e-43 Score=361.85 Aligned_cols=323 Identities=15% Similarity=0.211 Sum_probs=256.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
.+++.++|+++++.+||++|+++. +.+.+..+++||.||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 456888999999999999999975 43334557899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh---------hHhhcCccCC-CCccEEEEecCCChhhHHHH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCC-LYLKTIVSFANVSSSQKKEA 191 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 191 (419)
|+++|++++|+++.++.+++.++++.+++++||+++.... .+.+...... ..++.+++++........
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-- 229 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-- 229 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC--
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc--
Confidence 9999999999999999999999999999999999875421 1212211110 134566666532210000
Q ss_pred HHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhh-hhhhhhhcCccCCCCcEEE
Q 014742 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (419)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l 270 (419)
.......|+++..............++++++|+|||||||.||||+++|++++..+.. ....+ ++.++|+++
T Consensus 230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l 302 (652)
T 1pg4_A 230 --QEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW 302 (652)
T ss_dssp --CBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred --cCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 0001346777766443223334456799999999999999999999999998876643 33344 788999999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHH
Q 014742 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (419)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (419)
+..|++|.+++.. ++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.|++...
T Consensus 303 ~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------------- 369 (652)
T 1pg4_A 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD------------- 369 (652)
T ss_dssp ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG-------------
T ss_pred EccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCc-------------
Confidence 9999999999965 8899999999999863 78999999999999999999999999865210
Q ss_pred HHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC---CceeeeccCCC
Q 014742 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGMVE 419 (419)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE 419 (419)
...+..++ ++||.+++||+++++++++++.+.+| +++++.||+||
T Consensus 370 ----------------------~~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 417 (652)
T 1pg4_A 370 ----------------------KAIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417 (652)
T ss_dssp ----------------------GGTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred ----------------------cccccCCc--------CceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence 00111122 38999999999999999999999888 89999999998
No 12
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.1e-42 Score=352.35 Aligned_cols=312 Identities=20% Similarity=0.285 Sum_probs=250.1
Q ss_pred CCCHHH-HHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 42 LESPWQ-FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 42 ~~tl~~-~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
..++.+ +|...++.+ |++|+++. +++ +.+||.||.++++++|++|++.|+++||+|+++++|+++++++++
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 95 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI 95 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence 358999 888889999 99999863 221 589999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++.++.+++.++++.++++++|++....+.+...... .+....++.++.... ......
T Consensus 96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~ 165 (548)
T 2d1s_A 96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKT-VTTIKTIVILDSKVD---------YRGYQC 165 (548)
T ss_dssp HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHH-STTCCEEEETTCSSC---------BTTBCB
T ss_pred HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcC-CCCCCEEEEeCCccc---------cccccc
Confidence 9999999999999999999999999999999999999877655443221 122345555543210 001234
Q ss_pred HHHHHhcCCCC-CCCCCC------CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEec
Q 014742 201 WEEFLQLGTLD-CELPPK------KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273 (419)
Q Consensus 201 ~~~~~~~~~~~-~~~~~~------~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 273 (419)
|+++....... .+.... .++++++|+|||||||.||||++||+++...+......+ ...++.++|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVSPGTAVLTVV 243 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTT--TSCCCCTTCEEEECS
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchh--hccCCCccceEEEec
Confidence 66665443111 111111 238999999999999999999999999998887755541 012677899999999
Q ss_pred ChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHh
Q 014742 274 PLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY 351 (419)
Q Consensus 274 pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (419)
|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|+++..|.+.
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------- 300 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS---------------------- 300 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC----------------------
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC----------------------
Confidence 9999999987 56667 9999999876 999999999999999999999999998651
Q ss_pred hhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
+..+..++ ++||.+++||+++++++.+++++.+ +.++++.||+||
T Consensus 301 ---------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE 346 (548)
T 2d1s_A 301 ---------------ELLNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTE 346 (548)
T ss_dssp ---------------SCGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGG
T ss_pred ---------------cccccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCceeecccccc
Confidence 11111122 3899999999999999999999999 688999999998
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=5e-42 Score=348.85 Aligned_cols=312 Identities=16% Similarity=0.232 Sum_probs=255.0
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCch
Q 014742 40 AGLESPWQFFCDSAKR-----IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCP 113 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~-----~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~n~~ 113 (419)
...+++.++|.++++. +||++|+++. +. .+..+++||.||.++++++|++|++. |+++||+|+++++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456678999999998 9999999975 32 22346899999999999999999998 9999999999999999
Q ss_pred hHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHH
Q 014742 114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (419)
Q Consensus 114 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (419)
+++++++||+++|++++|+++.++.+++.++++.+++++||++....+.+..... ..+.++.++.+++...
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc--------
Confidence 9999999999999999999999999999999999999999999988766644332 2244556666654211
Q ss_pred hCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHH--HhhhhhhhhhhcCccCCCCcEEEE
Q 014742 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EVLSVDQMFVVTGKVCSEEDTYFS 271 (419)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~l~ 271 (419)
.....++++..............++++++|+|||||||.||||+++|+ ++. ..... ..+ +++++|++++
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~~ 252 (570)
T 3c5e_A 182 --DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMWT 252 (570)
T ss_dssp --TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEEE
T ss_pred --cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEEE
Confidence 013456666554422223344568999999999999999999999999 544 33332 333 7888999999
Q ss_pred ecChHHHHHHHH-HHHHHhcCceEEEeC--C-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHH
Q 014742 272 FLPLAHIYDQII-ETHCIHKGCSIGFWR--G-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (419)
Q Consensus 272 ~~pl~h~~g~~~-~l~~l~~G~~ivl~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (419)
.+|++|.+++.. ++.++..|+++++.+ . ++..+++.|+++++|+++++|.+++.+++.
T Consensus 253 ~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------ 314 (570)
T 3c5e_A 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------------------ 314 (570)
T ss_dssp CCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS------------------
T ss_pred cCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc------------------
Confidence 999999999985 788999999999986 3 999999999999999999999999998641
Q ss_pred HHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
. .+..++ ++||.+++||+++++++.++|++.+|+++++.||+||
T Consensus 315 -------------------~-~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE 358 (570)
T 3c5e_A 315 -------------------D-LSSYKF--------PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTE 358 (570)
T ss_dssp -------------------C-TTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETT
T ss_pred -------------------c-cccccc--------ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhh
Confidence 0 000112 3899999999999999999999989999999999998
No 14
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.6e-42 Score=346.73 Aligned_cols=301 Identities=19% Similarity=0.244 Sum_probs=248.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....|+.++|.++++.+||++|+++. + +++||.||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 3 ~~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 73 (509)
T 3ivr_A 3 LHDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73 (509)
T ss_dssp TTCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45789999999999999999999974 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++.++.+++.++++.++++++|++....+.+..... .......++.+++...
T Consensus 74 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------- 138 (509)
T 3ivr_A 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-SLGGVKKAYAIGDGSG-------------- 138 (509)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGG-GCSSCCEEEESSCCCS--------------
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhc-ccCCceEEEEcCCCCc--------------
Confidence 9999999999999999999999999999999999999988776444442 2345666666654321
Q ss_pred eHHHHHh-cCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHH
Q 014742 200 SWEEFLQ-LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (419)
Q Consensus 200 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (419)
.+.++.. ............++++++|+|||||||.||||+++|+++.+.+......+ +++++|++++.+|++|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 213 (509)
T 3ivr_A 139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHV 213 (509)
T ss_dssp SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSH
T ss_pred ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcch
Confidence 1222222 11223334456789999999999999999999999999999998877766 88899999999999999
Q ss_pred HHHHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 279 YDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 279 ~g~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
+++...+.++..|++.++... ++..+++.|+++++|+++++|.++..+++..
T Consensus 214 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--------------------------- 266 (509)
T 3ivr_A 214 TGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--------------------------- 266 (509)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC---------------------------
T ss_pred hHHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc---------------------------
Confidence 999886665555555555444 9999999999999999999999999987631
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
...++ +++|.++.+|++ ++.+.+.+.+ ++++++.||+||
T Consensus 267 ------------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE 306 (509)
T 3ivr_A 267 ------------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSE 306 (509)
T ss_dssp ------------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGG
T ss_pred ------------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccc
Confidence 01112 389999999987 8888999888 999999999998
No 15
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5.9e-43 Score=348.96 Aligned_cols=310 Identities=15% Similarity=0.172 Sum_probs=241.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
+..++.++|.++++.+||++|+++....++.++..+++||.||.++++++|++|++.|+ +||+|+++++|++++++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 46899999999999999999999862111234445789999999999999999999996 99999999999999999999
Q ss_pred HHHHcCCeEEeecc---CCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCC-CccEEEEecCCChhhHHHHHHhCc
Q 014742 121 ACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL-YLKTIVSFANVSSSQKKEAEELGV 196 (419)
Q Consensus 121 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 196 (419)
||+++|++++|+++ .++.+++.++++.+++++||++......+......... ....++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 78899999999999999999999888776554432211 112233322111
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCC------CcEEE
Q 014742 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE------EDTYF 270 (419)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~------~d~~l 270 (419)
.............++++++|+|||||||.||||++||+++.+++......+ .... +|+++
T Consensus 169 ---------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~l 234 (480)
T 3t5a_A 169 ---------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSALV 234 (480)
T ss_dssp ---------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEEE
T ss_pred ---------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeEE
Confidence 111112233445678999999999999999999999999999988877766 5555 89999
Q ss_pred EecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHH
Q 014742 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (419)
Q Consensus 271 ~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (419)
+.+|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +.++|.++..++.....
T Consensus 235 ~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~------------ 301 (480)
T 3t5a_A 235 SWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT------------ 301 (480)
T ss_dssp ECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC------------
T ss_pred EeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC------------
Confidence 9999999999875 7889999999999862 899999999999999 88999999887652110
Q ss_pred HHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC------CceeeeccCC
Q 014742 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGMV 418 (419)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~t 418 (419)
.+..+..++ ++||.+++||+++++++.++|++.++ ..+++.||+|
T Consensus 302 ---------------------~~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~T 352 (480)
T 3t5a_A 302 ---------------------DDDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLA 352 (480)
T ss_dssp ---------------------TGGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEET
T ss_pred ---------------------cccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcccccccc
Confidence 111112223 38999999999999999999999884 3799999999
Q ss_pred C
Q 014742 419 E 419 (419)
Q Consensus 419 E 419 (419)
|
T Consensus 353 E 353 (480)
T 3t5a_A 353 E 353 (480)
T ss_dssp T
T ss_pred c
Confidence 8
No 16
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=7.2e-43 Score=351.11 Aligned_cols=291 Identities=18% Similarity=0.201 Sum_probs=240.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
+|+.+.|.++++.+||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999975 3 58999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHH
Q 014742 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (419)
+++|++++|+++.++.+++.++++.++++++|++....... .. ..++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceechh------------------hhh
Confidence 99999999999999999999999999999999986432110 00 0111110 112
Q ss_pred HHHhcC--CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 203 EFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 203 ~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
++.... ....+.....++++++|+|||||||.||||++||+++.+.+......+ ++.++|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 222111 122223345679999999999999999999999999999998877766 8889999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+..++.+++.|+++++.+. ++..+++.++++++|++.++|.++..++..
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------- 252 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLME--------------------------- 252 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTS---------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhh---------------------------
Confidence 8888899999999999874 899999999999999999999999887531
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
......++ +++|.+++||+++++++.+++.+.+ ++++++.||+||
T Consensus 253 ----------~~~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE 298 (512)
T 3fce_A 253 ----------ASFSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE 298 (512)
T ss_dssp ----------TTCSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred ----------ccccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccCh
Confidence 11111112 3899999999999999999999998 899999999998
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=7.2e-42 Score=345.19 Aligned_cols=311 Identities=19% Similarity=0.229 Sum_probs=243.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
...+++.++|..+++ +||++|+++. + +++||.||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 445669999999999 9999999864 2 47999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCc-cEEEEecCCChhhHHHHHHhCcee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGVSC 198 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 198 (419)
+||+++|++++|+++.++.+++.++++.++++++|++....+.+...... .... ..+++.+..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALES-AEHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHC-C---CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhh-ccccCceEEEecccccc--------cccc
Confidence 99999999999999999999999999999999999998766554433211 1222 344444432110 0012
Q ss_pred eeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhH-HHHhhhhhhhhhhcCccCCCCcEEEEecChHH
Q 014742 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (419)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (419)
..++++..............++++++++|||||||.||||+++|+++ ..........+ ++.++|++++.+|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~ 236 (529)
T 2v7b_A 162 PLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLFF 236 (529)
T ss_dssp CBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTTS
T ss_pred cchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHHH
Confidence 34666655332222334456899999999999999999999999999 56655544434 7888999999999999
Q ss_pred HHHHHH-HHHHHhcCceEEEe-CC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 278 IYDQII-ETHCIHKGCSIGFW-RG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 278 ~~g~~~-~l~~l~~G~~ivl~-~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.+++.. ++.++..|+++++. +. ++..+++.|+++++|+++++|+++..+++.
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------- 291 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS------------------------- 291 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTC-------------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhC-------------------------
Confidence 999876 67889999999987 34 999999999999999999999999988641
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
...+.... .++|.+++||+++++++.+++++.+|+++++.||+||
T Consensus 292 ---------~~~~~~~~-----------~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE 336 (529)
T 2v7b_A 292 ---------PNLPARAD-----------VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTE 336 (529)
T ss_dssp ---------TTCCCGGG-----------CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTT
T ss_pred ---------cccccccC-----------CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhh
Confidence 00000000 2799999999999999999999999999999999998
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.5e-41 Score=348.68 Aligned_cols=307 Identities=15% Similarity=0.179 Sum_probs=254.3
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
...++.++|.++++ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 36789999999988 999999964 3 689999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChh----hHhhcCccCCCCccEEEEecCCChhhHHHHHHhCc
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (419)
||+++|++++|+++..+.+++.++++.+++++++++..... ...............+...++...
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999987541 111111112234445555544321
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChH
Q 014742 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (419)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (419)
..+.+...............++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++
T Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 235 (617)
T 3rg2_A 163 --HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA 235 (617)
T ss_dssp --TBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --cchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence 1233444433233334455678999999999999999999999999999999887777 888999999999999
Q ss_pred HHHHHHH--HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhh
Q 014742 277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (419)
Q Consensus 277 h~~g~~~--~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (419)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++......
T Consensus 236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 296 (617)
T 3rg2_A 236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE------------------- 296 (617)
T ss_dssp SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC-------------------
T ss_pred hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc-------------------
Confidence 9999884 7889999999999876 99999999999999999999999999876432110
Q ss_pred hhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
. ..++ ++||.+++||+++++++.++|.+.+|+++++.||+||
T Consensus 297 ------------~----~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE 338 (617)
T 3rg2_A 297 ------------S----RAQL--------ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE 338 (617)
T ss_dssp ------------C----TTTT--------TTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETT
T ss_pred ------------c----cccC--------CCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCc
Confidence 0 0011 3899999999999999999999999999999999998
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=7.7e-42 Score=347.85 Aligned_cols=288 Identities=17% Similarity=0.198 Sum_probs=239.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
....++.++|.+.++.+||++|+++. + +.+||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999974 3 58999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceee
Q 014742 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (419)
+||+++|++++|+++.++.+++.++++.++++++|++......+ .....++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~--------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA--------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc---------------
Confidence 99999999999999999999999999999999999997654322 1122222211110
Q ss_pred eHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHH
Q 014742 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (419)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (419)
.............++++++|+|||||||.||||+++|+++.+.+.. ...+ +++++|++++.+|++|..
T Consensus 200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~ 267 (570)
T 4gr5_A 200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-----GFGPDEVFLQCSPVSWDA 267 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-----CCSTTCEEEECSCTTSST
T ss_pred ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-----CCCCCCEEEEecCccHHH
Confidence 0011122233456899999999999999999999999999876654 2222 678899999999999877
Q ss_pred HHHHHHHHHhcCceEEEeCC---CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 280 DQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 280 g~~~~l~~l~~G~~ivl~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+...++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+++...
T Consensus 268 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------------------------- 322 (570)
T 4gr5_A 268 FGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP------------------------- 322 (570)
T ss_dssp HHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch-------------------------
Confidence 76678889999999999863 89999999999999999999999999875210
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
. .+ ++||.+++||+++++++.+++.+.+ ++++++.||+||
T Consensus 323 ------------~---~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE 363 (570)
T 4gr5_A 323 ------------E---AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAE 363 (570)
T ss_dssp ------------G---GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred ------------h---hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhh
Confidence 0 12 3899999999999999999999887 899999999998
No 20
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=5.5e-42 Score=344.53 Aligned_cols=290 Identities=18% Similarity=0.247 Sum_probs=245.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCchhHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
+|+.+.|.++++.+||++|+.+. + +++||+||.++++++|++|++. |.++|++|+++++|+++++++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999864 3 6899999999999999999975 888999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++....... ... . .....+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~~---~----------------------~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VGQ---Q----------------------IQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CCC---S----------------------SCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---ccc---c----------------------cceecH
Confidence 999999999999999999999999999999999976543211 000 0 013344
Q ss_pred HHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
+++.... ..........++++++|+|||||||.||||++||+++.+.+......+ ++..+|++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 5554433 222223345678999999999999999999999999999998877766 7889999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|.++..+++.
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------- 251 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD--------------------------- 251 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS---------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc---------------------------
Confidence 8888899999999999864 899999999999999999999999988641
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
+.....++ +++|.+++||+++++++.+++++.+ ++++++.||+||
T Consensus 252 ----------~~~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE 297 (511)
T 3e7w_A 252 ----------PGFSQDLL--------PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTE 297 (511)
T ss_dssp ----------TTCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGG
T ss_pred ----------cccccccC--------CcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccch
Confidence 11111112 3899999999999999999999998 899999999998
No 21
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=3.8e-42 Score=344.89 Aligned_cols=299 Identities=21% Similarity=0.342 Sum_probs=241.5
Q ss_pred HHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcC
Q 014742 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126 (419)
Q Consensus 47 ~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G 126 (419)
++|.+.++.+|+++++..... ++ +++||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 468899999999999985310 22 579999999999999999999999999999999999999999999999999
Q ss_pred CeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeHHHHHh
Q 014742 127 ITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ 206 (419)
Q Consensus 127 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (419)
++++|+++.++.+++.++++.++++++|++....+.+....... . ..+..++.... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999976544332222111 1 13333332211 11222222
Q ss_pred cCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHH-HH
Q 014742 207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET 285 (419)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l 285 (419)
............++++++|+|||||||.||||+++|+++.+.+......+ +++++|++++.+|++|.+|+.. .+
T Consensus 142 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~ 216 (503)
T 4fuq_A 142 GASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVASN 216 (503)
T ss_dssp TSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCHH
T ss_pred cCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHHH
Confidence 22222333455689999999999999999999999999999998877776 8889999999999999999865 77
Q ss_pred HHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCC
Q 014742 286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364 (419)
Q Consensus 286 ~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (419)
.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++.
T Consensus 217 ~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~----------------------------------- 259 (503)
T 4fuq_A 217 VTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQS----------------------------------- 259 (503)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTC-----------------------------------
T ss_pred HHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhC-----------------------------------
Confidence 88999999999887 9999999998 899999999999998651
Q ss_pred chhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 365 ~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+.....++ +++|.+++||+++++++.++|.+.+|.++++.||+||
T Consensus 260 --~~~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE 304 (503)
T 4fuq_A 260 --PRLTKETT--------GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTE 304 (503)
T ss_dssp --TTCSTTTT--------TTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETT
T ss_pred --CCccccch--------hhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccc
Confidence 11111112 3899999999999999999999999999999999998
No 22
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=7.7e-42 Score=368.25 Aligned_cols=335 Identities=21% Similarity=0.260 Sum_probs=262.8
Q ss_pred CCCCCcceecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCC
Q 014742 19 KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRG 98 (419)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g 98 (419)
.+....+|++......+ ....|+.++|.+.++.+||++|+++. +.+ +++||.||.++++++|++|++.|
T Consensus 41 ~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~G 109 (979)
T 3tsy_A 41 NNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLG 109 (979)
T ss_dssp ----CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcC
Confidence 34445566665543222 23689999999999999999999864 222 58999999999999999999999
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEE
Q 014742 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIV 178 (419)
Q Consensus 99 ~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 178 (419)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.+++++||++....+.+....... ...++
T Consensus 110 v~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~ 186 (979)
T 3tsy_A 110 VNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD---GVVIV 186 (979)
T ss_dssp CCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS---CCEEE
T ss_pred CCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC---CceEE
Confidence 999999999999999999999999999999999999999999999999999999999987765544332211 12344
Q ss_pred EecCCChhhHHHHHHhCceeeeHHHHHhcCC---CCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhh
Q 014742 179 SFANVSSSQKKEAEELGVSCFSWEEFLQLGT---LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM 255 (419)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~ 255 (419)
.+++.... ........+.++..... ...+.....++++++|+|||||||.||||+++|+++...+......
T Consensus 187 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 260 (979)
T 3tsy_A 187 CIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG 260 (979)
T ss_dssp ECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCS
T ss_pred EeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHh
Confidence 44432110 00112445555543331 1223345678999999999999999999999999999887654321
Q ss_pred hhhcCccCCCCcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHH
Q 014742 256 FVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 333 (419)
Q Consensus 256 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 333 (419)
. .....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+.
T Consensus 261 ~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---- 335 (979)
T 3tsy_A 261 E-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS---- 335 (979)
T ss_dssp S-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC----
T ss_pred h-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC----
Confidence 1 01225778999999999999999976 7888999999999987 999999999999999999999999998652
Q ss_pred hhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCcee
Q 014742 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLT 412 (419)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~ 412 (419)
......++ ++||.+++||+++++++.+++++.+ +++++
T Consensus 336 ---------------------------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~ 374 (979)
T 3tsy_A 336 ---------------------------------SETEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPNAKLG 374 (979)
T ss_dssp ---------------------------------GGGGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCTTCEEE
T ss_pred ---------------------------------ccccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCCCCeEE
Confidence 11111222 3899999999999999999999998 89999
Q ss_pred eeccCCC
Q 014742 413 QGYGMVE 419 (419)
Q Consensus 413 ~~YG~tE 419 (419)
+.||+||
T Consensus 375 ~~YG~TE 381 (979)
T 3tsy_A 375 QGYGMTE 381 (979)
T ss_dssp ECEECGG
T ss_pred eeechhh
Confidence 9999998
No 23
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.5e-41 Score=347.98 Aligned_cols=285 Identities=17% Similarity=0.173 Sum_probs=238.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
...++.++|.+.++.+||++|+++. + +.+||.||.++++++|++|++.|+++||+|+++++|+++++++++
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4679999999999999999999975 3 589999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++|+++.++.+++.++++.+++++|+++....... ...... ...
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~~~------------------- 147 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-PVR------------------- 147 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-EGG-------------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-eec-------------------
Confidence 9999999999999999999999999999999999776433211 011111 100
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
.. .............++++++|+|||||||.||||+++|+++.+.+.. ...+ ++.++|++++.+|++|.++
T Consensus 148 --~~-~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~ 218 (620)
T 4dg8_A 148 --HL-PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA 218 (620)
T ss_dssp --GC-CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred --cC-CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence 00 0001112223446899999999999999999999999999887765 3334 7888999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC---CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 281 QIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
+..++.+|..|+++++.+. ++..+++.|+++++|++.++|.+++.+.+.
T Consensus 219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~---------------------------- 270 (620)
T 4dg8_A 219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL---------------------------- 270 (620)
T ss_dssp HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc----------------------------
Confidence 8889999999999999752 999999999999999999999999998651
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
.+ .++ ++||.+++||++++++..+++.+.+ ++++++.||+||
T Consensus 271 --------~~----~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 313 (620)
T 4dg8_A 271 --------DP----DCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTE 313 (620)
T ss_dssp --------CG----GGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred --------Ch----hhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhh
Confidence 00 012 3899999999999998888887766 899999999998
No 24
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=8e-42 Score=349.40 Aligned_cols=309 Identities=19% Similarity=0.206 Sum_probs=248.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~ 119 (419)
.+..|+.++|..+++.+||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 35789999999999999999999876 42 22368999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEeeccCCC---hhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCc
Q 014742 120 EACNSQAITYVPLYDTLG---ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (419)
Q Consensus 120 lA~~~~G~~~vpl~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (419)
|||+++|++++|+++..+ .+++.++++.+++++++++.+....+.............+..+
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 146 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI---------------- 146 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE----------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee----------------
Confidence 999999999999999884 5789999999999999999776554432221111111111111
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChH
Q 014742 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (419)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (419)
..+.+..............++++++|+|||||||.||||++||+++.+.+......+ ++.++|++++++|++
T Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 147 ---ALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH 218 (590)
T ss_dssp ---EGGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ---echhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence 111111111112233455689999999999999999999999999999999877766 888999999999999
Q ss_pred HHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q 014742 277 HIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (419)
Q Consensus 277 h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (419)
|.+|+.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+.+.++.
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------------ 280 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE------------------ 280 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG------------------
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh------------------
Confidence 9999987 8889999999999864 789999999999999999999999988763211
Q ss_pred hhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhC------CceeeeccCCC
Q 014742 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGMVE 419 (419)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~tE 419 (419)
...+..++ ++||.+++||+++++++.++|.+.++ .++++.||+||
T Consensus 281 ----------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE 331 (590)
T 3kxw_A 281 ----------------EKKEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAE 331 (590)
T ss_dssp ----------------GGGTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGG
T ss_pred ----------------hhccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccc
Confidence 11111122 38999999999999999999999883 37999999998
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.4e-41 Score=339.64 Aligned_cols=291 Identities=15% Similarity=0.134 Sum_probs=239.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.+.|...++.+||++|+.+. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 3 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++.+...... .. . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence 9999999999999999999999999999999999876432210 11 1 1122
Q ss_pred HHHHh---cCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHH
Q 014742 202 EEFLQ---LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (419)
Q Consensus 202 ~~~~~---~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (419)
.++.. ............++++++|+|||||||.||||++||+++.+.+....... ......++++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 22211 11122233455689999999999999999999999999998777654431 1367788999999999999
Q ss_pred HHHHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhh
Q 014742 279 YDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (419)
Q Consensus 279 ~g~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (419)
.++..++.++..|+++++.+. ++..+++.+.++++|++.++|+++..+...
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------- 255 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS------------------------- 255 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS-------------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh-------------------------
Confidence 988878889999999999864 899999999999999999999999887541
Q ss_pred hhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
......++ +++|.+++||+++++++.+++.+.+ ++++++.||+||
T Consensus 256 ------------~~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE 301 (521)
T 3l8c_A 256 ------------DDFCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTE 301 (521)
T ss_dssp ------------TTCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred ------------hccccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccH
Confidence 00111112 3899999999999999999999988 899999999998
No 26
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.7e-41 Score=340.30 Aligned_cols=306 Identities=19% Similarity=0.217 Sum_probs=237.3
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHH
Q 014742 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (419)
Q Consensus 43 ~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~ 122 (419)
+|+.++|.++++.+||++|+++. + +++||+||.++++++|++|++. +||+|+++++|+++++++++||
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~ 68 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC 68 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence 36778999999999999999964 3 5899999999999999999986 8999999999999999999999
Q ss_pred HHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCcee-eeH
Q 014742 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC-FSW 201 (419)
Q Consensus 123 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 201 (419)
+++|++++|+++.++.+++.++++.++++++|++............ ...+..+.......... ........ ...
T Consensus 69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 143 (501)
T 3ipl_A 69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSN 143 (501)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------
T ss_pred HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccch
Confidence 9999999999999999999999999999999999876543322111 01111111100000000 00000000 001
Q ss_pred HHHHhcC-CCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
+...... ..........++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++|.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 218 (501)
T 3ipl_A 144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISG 218 (501)
T ss_dssp ------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHH
T ss_pred hhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHH
Confidence 1111111 011122345689999999999999999999999999999998877766 8889999999999999999
Q ss_pred HHHHHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccC
Q 014742 281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (419)
+..++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++..
T Consensus 219 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------------- 269 (501)
T 3ipl_A 219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQG----------------------------- 269 (501)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcC-----------------------------
Confidence 9888899999999999987 9999999999999999999999999986520
Q ss_pred CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.... .+||.+++||+++++++.+++++ +++++++.||+||
T Consensus 270 --------~~~~-----------~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE 309 (501)
T 3ipl_A 270 --------LHEP-----------YNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTE 309 (501)
T ss_dssp --------CCSC-----------TTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGG
T ss_pred --------CCCc-----------CcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccc
Confidence 0000 27999999999999999999998 5999999999998
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.3e-40 Score=339.57 Aligned_cols=312 Identities=19% Similarity=0.211 Sum_probs=249.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCc
Q 014742 33 DGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112 (419)
Q Consensus 33 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~ 112 (419)
..+|.......++.++|.+.++.+|+.+++.+. .+..+++||+||.++++++|++|++.|+++||+|+++++|+
T Consensus 11 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 84 (576)
T 3gqw_A 11 HSLPMRYADFPTLVDALDYAALSSAGMNFYDRR------CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETS 84 (576)
T ss_dssp ---CCCCSCCSSHHHHHHHHTTSSCEEEEECTT------SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSS
T ss_pred CCCCcccCCCCcHHHHHHHHhhCCCCeEEeCCC------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Confidence 345555577889999999999999998877532 22336899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCeEEeeccCCC-------hhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCCh
Q 014742 113 PEWIIAMEACNSQAITYVPLYDTLG-------ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185 (419)
Q Consensus 113 ~~~~~~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (419)
++++++++||+++|++++|+++.++ .+++.++++.+++++||++.+....+....... ... .
T Consensus 85 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~-~--------- 153 (576)
T 3gqw_A 85 SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PEL-H--------- 153 (576)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC-TTC-E---------
T ss_pred HHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC-Ccc-e---------
Confidence 9999999999999999999999999 789999999999999999987766554433211 111 1
Q ss_pred hhHHHHHHhCceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCC
Q 014742 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE 265 (419)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~ 265 (419)
.....................++++++|+|||||||.||||+++|+++.+.+...... ..++.+
T Consensus 154 ------------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~ 217 (576)
T 3gqw_A 154 ------------VLSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD----GIKLRP 217 (576)
T ss_dssp ------------EEEHHHHHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT----TSCCCT
T ss_pred ------------ecchhhhhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc----ccCCCC
Confidence 1111111111122233344568999999999999999999999999999888775443 137889
Q ss_pred CcEEEEecChHHHHHHHH-HHHHHhcCceEEEeCC-----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCc
Q 014742 266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339 (419)
Q Consensus 266 ~d~~l~~~pl~h~~g~~~-~l~~l~~G~~ivl~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 339 (419)
+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|.++..+.+.+.
T Consensus 218 ~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------- 289 (576)
T 3gqw_A 218 GDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVN-------- 289 (576)
T ss_dssp TCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCC--------
T ss_pred cceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhc--------
Confidence 999999999999999976 6778999999998863 88999999999999999999999988754211
Q ss_pred hHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh------CCceee
Q 014742 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS------GAPLTQ 413 (419)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~------~~~v~~ 413 (419)
.......++ +++|.+++||+++++++.++|.+.+ +.++++
T Consensus 290 --------------------------~~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (576)
T 3gqw_A 290 --------------------------EKDLAELDL--------SCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMP 335 (576)
T ss_dssp --------------------------HHHHTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEE
T ss_pred --------------------------ccccccCCh--------hhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccc
Confidence 111111222 3899999999999999999999988 678999
Q ss_pred eccCCC
Q 014742 414 GYGMVE 419 (419)
Q Consensus 414 ~YG~tE 419 (419)
.||+||
T Consensus 336 ~YG~TE 341 (576)
T 3gqw_A 336 CYGLAE 341 (576)
T ss_dssp EEECGG
T ss_pred cCCccc
Confidence 999998
No 28
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2e-40 Score=336.57 Aligned_cols=286 Identities=17% Similarity=0.234 Sum_probs=235.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHH
Q 014742 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (419)
Q Consensus 42 ~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA 121 (419)
..++.++|.+.++.+||++|+++. + +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 108 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA 108 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 3 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeeeH
Q 014742 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (419)
Q Consensus 122 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (419)
|+++|++++|+++.++.+++.++++.++++++|++......+.... ....+..++....
T Consensus 109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~~---------------- 167 (563)
T 1amu_A 109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDTI---------------- 167 (563)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCSTT----------------
T ss_pred HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchhh----------------
Confidence 9999999999999999999999999999999999986554432211 1112333322100
Q ss_pred HHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHH
Q 014742 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (419)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (419)
.............++++++|+|||||||.||||++||+++.+.+......+ +++++|++++.+|++|.+++
T Consensus 168 ----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~ 238 (563)
T 1amu_A 168 ----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDASV 238 (563)
T ss_dssp ----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHHH
T ss_pred ----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHHH
Confidence 000011112234678999999999999999999999999998887766655 78899999999999999998
Q ss_pred HHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhc
Q 014742 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (419)
Q Consensus 282 ~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (419)
..++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+..
T Consensus 239 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~----------------------------- 289 (563)
T 1amu_A 239 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP----------------------------- 289 (563)
T ss_dssp HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-----------------------------
T ss_pred HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-----------------------------
Confidence 778889999999999864 89999999999999999999999877632
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.. + .++|.+++||+++++++.++|++. +++++.||+||
T Consensus 290 --------~~------~--------~~lr~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE 327 (563)
T 1amu_A 290 --------ER------I--------LSIQTLITAGSATSPSLVNKWKEK--VTYINAYGPTE 327 (563)
T ss_dssp --------TT------C--------CSCSEEEEESSCCCHHHHHHHTTT--SEEEEEECCGG
T ss_pred --------cc------c--------ccccEEEEEEecCCHHHHHHHHhC--CeEEEEECcCH
Confidence 00 1 389999999999999999999884 89999999998
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=9.1e-40 Score=332.21 Aligned_cols=305 Identities=16% Similarity=0.127 Sum_probs=239.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCC----CCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH
Q 014742 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDG----KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~----~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~ 115 (419)
.+..++.++|.++++.+||++|+++. ++ .....+++||+||.++++++|++|++.|+ +||+|+++++|++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 45788999999999999999999875 32 12234689999999999999999999999 799999999999999
Q ss_pred HHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhC
Q 014742 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (419)
Q Consensus 116 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (419)
+++++||+++|++++|+++.++.+++.++++.++++++|++........ ......++....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~------------- 153 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN------------- 153 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC-------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc-------------
Confidence 9999999999999999999999999999999999999999876543321 011112222111
Q ss_pred ceeeeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhh---hcCccCCCCcEEEEe
Q 014742 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV---VTGKVCSEEDTYFSF 272 (419)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~---~~~~~~~~~d~~l~~ 272 (419)
..+.+...............++++++|+|||||||.||||+++|+++.+.+......+. .....+...+++++.
T Consensus 154 ---~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (562)
T 3ite_A 154 ---QSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCL 230 (562)
T ss_dssp ---HHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECC
T ss_pred ---hhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEe
Confidence 11222222222222233445788999999999999999999999999988776544321 112357778999999
Q ss_pred cChHHHHHHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q 014742 273 LPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (419)
Q Consensus 273 ~pl~h~~g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (419)
.|++|..++..++.++..|+++++.+. .+..+++.++++++|++.++|++++.+..
T Consensus 231 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~---------------------- 288 (562)
T 3ite_A 231 ASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL---------------------- 288 (562)
T ss_dssp SCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----------------------
T ss_pred cCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----------------------
Confidence 999998888778889999999998765 56788999999999999999998876521
Q ss_pred hhhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+ .++ ++||.+++||+++++++.++|++.+++++++.||+||
T Consensus 289 ---------------~~----~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE 330 (562)
T 3ite_A 289 ---------------VP----EDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTE 330 (562)
T ss_dssp ---------------CG----GGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGG
T ss_pred ---------------Cc----ccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccch
Confidence 11 012 3899999999999999999999988999999999998
No 30
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.8e-39 Score=325.47 Aligned_cols=287 Identities=21% Similarity=0.297 Sum_probs=232.4
Q ss_pred CCCCCHHHHHHHHHHhCCC-CCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHH
Q 014742 40 AGLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (419)
Q Consensus 40 ~~~~tl~~~l~~~a~~~pd-~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~ 118 (419)
.++.++.+.|.++++.+|+ ++|+++. + +++||+||.++++++|++|+ .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 3467888889999999887 9999874 3 68999999999999998874 488999999999999999
Q ss_pred HHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCcee
Q 014742 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (419)
Q Consensus 119 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (419)
++||+++|++++|+++.++.+++.++++.++++++|++...... .....+..+ ..+..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~------~~~~~~~~~-~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP------PALGALERV-DVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC------GGGTTSEEE-ECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc------hhhcccccc-ccccc---------------
Confidence 99999999999999999999999999999999999998753110 011111111 11110
Q ss_pred eeHHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHH
Q 014742 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (419)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (419)
.....+.....++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++|.
T Consensus 143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 208 (505)
T 3nyq_A 143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHV 208 (505)
T ss_dssp ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSH
T ss_pred ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHH
Confidence 0011223345678999999999999999999999999999999887777 88899999999999999
Q ss_pred HHHHH-HHHHHhcCceEEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 279 YDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 279 ~g~~~-~l~~l~~G~~ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
+|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++.+..
T Consensus 209 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~------------------------ 263 (505)
T 3nyq_A 209 HGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPA------------------------ 263 (505)
T ss_dssp HHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGG------------------------
T ss_pred HHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhc------------------------
Confidence 99976 8899999999999876 999999999 88999999999999998763211
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+ .....++ ++|.+++||+++++++.+++++.+|.++++.||+||
T Consensus 264 ---------~~-~~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE 308 (505)
T 3nyq_A 264 ---------DP-ELAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTE 308 (505)
T ss_dssp ---------CH-HHHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETT
T ss_pred ---------Cc-hhhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhh
Confidence 11 1222343 899999999999999999999999999999999998
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.8e-38 Score=347.93 Aligned_cols=291 Identities=17% Similarity=0.218 Sum_probs=241.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHH
Q 014742 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (419)
Q Consensus 41 ~~~tl~~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~l 120 (419)
+..++.++|...++.+||++|+++. + +.+||.||.++++++|++|++.|+++|++|+++++|+++++++++
T Consensus 462 ~~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 532 (1304)
T 2vsq_A 462 ETKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGIL 532 (1304)
T ss_dssp CCCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHH
Confidence 3478999999999999999999875 3 489999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCChhhHHHHHHhCceeee
Q 014742 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (419)
Q Consensus 121 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (419)
||+++|++++||+|.++.+++.++++.+++++|+++......+... +.....+.+++..
T Consensus 533 ailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~---------------- 591 (1304)
T 2vsq_A 533 GVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQT---------------- 591 (1304)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGG----------------
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEecccc----------------
Confidence 9999999999999999999999999999999999998654432111 1122333333210
Q ss_pred HHHHHhcCCCCCCCCCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHH
Q 014742 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (419)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (419)
.. . .....+.....++++++|+|||||||.||||+++|+++.+.. .....+ +++++|+++...|++|..+
T Consensus 592 --~~-~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 592 --RF-E-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp --GG-G-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred --cc-c-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 00 0 111122234568999999999999999999999999998763 333333 7888999999999999888
Q ss_pred HHHHHHHHhcCceEEEeCC----CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhh
Q 014742 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (419)
Q Consensus 281 ~~~~l~~l~~G~~ivl~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (419)
...++.+|..|+++++.+. ++..+++.|.++++|++.++|.+++.+.+.
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~--------------------------- 714 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA--------------------------- 714 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh---------------------------
Confidence 8778999999999999864 899999999999999999999999988641
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhh-CCceeeeccCCC
Q 014742 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGMVE 419 (419)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE 419 (419)
.. ..++ +||.+++||+++++++.++|.+.+ +.++++.||+||
T Consensus 715 ---------~~----~~~~--------~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 757 (1304)
T 2vsq_A 715 ---------GE----DWMK--------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTE 757 (1304)
T ss_dssp ---------CS----HHHH--------TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGG
T ss_pred ---------ch----hcCC--------CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhH
Confidence 00 1122 899999999999999999999888 478999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.91 E-value=5.9e-25 Score=210.27 Aligned_cols=148 Identities=19% Similarity=0.217 Sum_probs=128.5
Q ss_pred CCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeC
Q 014742 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (419)
Q Consensus 219 ~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~ 298 (419)
.+++++|+|||||||.||||++||+++.+++......+ +++++|++++.+|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 36889999999999999999999999999999877777 8899999999999999999988889999999999986
Q ss_pred CCHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHHHHHHH
Q 014742 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 378 (419)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (419)
. ....++.|+++++|++.++|+++..+++.. . ...++
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~----------------------------------~----~~~~l---- 147 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENS----------------------------------A----TSGQV---- 147 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCT----------------------------------T----TGGGG----
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhccc----------------------------------c----ccccC----
Confidence 4 223467899999999999999999987510 0 11123
Q ss_pred HHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 379 ~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
++||.+++||+++++++.+++++ +|+++++.||+||
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE 183 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTE 183 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGG
T ss_pred ----CcceEEEEcccCCCchheecccc-cCceEEecccccc
Confidence 28999999999999999999998 5999999999998
No 33
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.87 E-value=4.5e-22 Score=191.27 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=126.3
Q ss_pred CCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCceEE
Q 014742 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIG 295 (419)
Q Consensus 217 ~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~iv 295 (419)
..+++++.++|||||||.||+|.++|+++...+......+ ...++.++|++++.+|+ +|.+++...+.++..|+ ++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGY--QHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MF 164 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTT--TTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhH--HhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EE
Confidence 4678899999999999999999999999998887543322 12367889999999999 99999988777799999 55
Q ss_pred EeCC-CHH-----------------------HHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHh
Q 014742 296 FWRG-DVR-----------------------YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY 351 (419)
Q Consensus 296 l~~~-~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (419)
++.. ++. .+++.|+++++|++.++|+++..|++.
T Consensus 165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~---------------------- 222 (369)
T 3hgu_A 165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKR---------------------- 222 (369)
T ss_dssp ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTC----------------------
T ss_pred ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhh----------------------
Confidence 5543 777 788899999999999999999998652
Q ss_pred hhhhhccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHH-Hhh-CCceeeeccCCC
Q 014742 352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR-VTS-GAPLTQGYGMVE 419 (419)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~-~~~-~~~v~~~YG~tE 419 (419)
+.....+++ ++|.+++||+++++++.++++ +.| ++++++.||+||
T Consensus 223 ---------------~~~~~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE 269 (369)
T 3hgu_A 223 ---------------PEVVLQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTS 269 (369)
T ss_dssp ---------------HHHHHHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGG
T ss_pred ---------------hhhhccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchh
Confidence 122223343 899999999999999999999 999 899999999998
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.87 E-value=1.1e-21 Score=192.93 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=131.4
Q ss_pred CCCC-CceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHH-HHHHHHhcCce
Q 014742 216 PKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCS 293 (419)
Q Consensus 216 ~~~~-~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~l~~l~~G~~ 293 (419)
...+ +++++++|||||||.||+|+++|+++...+......+. ..++.++|++++.+|+.|..+.. .++.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY--MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH--HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH--HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3445 88999999999999999999999999877666533221 12678899999999987666655 47788999999
Q ss_pred EEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHH
Q 014742 294 IGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372 (419)
Q Consensus 294 ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (419)
+++.+. ++..+++.|+++++|+++++|+++..|++..+..... .
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------------------~----- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID------------------------------P----- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC------------------------------T-----
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC------------------------------c-----
Confidence 998866 9999999999999999999999999998753321000 0
Q ss_pred HHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 373 VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 373 ~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
.+ +++|.+++||+++++++.+++++.||+++++.||+||
T Consensus 204 ~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 242 (436)
T 3qov_A 204 RE--------TTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTE 242 (436)
T ss_dssp TS--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGG
T ss_pred cc--------CCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchh
Confidence 01 3899999999999999999999999999999999998
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.87 E-value=2.4e-21 Score=190.51 Aligned_cols=160 Identities=19% Similarity=0.126 Sum_probs=132.3
Q ss_pred CCCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCce
Q 014742 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCS 293 (419)
Q Consensus 215 ~~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~ 293 (419)
....++++++++|||||||.||+|+++|+++...+......+. ..+++++|++++.+|+ +|..++...+.++..|++
T Consensus 85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~ 162 (437)
T 2y27_A 85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR--AAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLT 162 (437)
T ss_dssp CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCE
T ss_pred ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEcccccccccchHHHHHHHHcCCE
Confidence 3446789999999999999999999999999877655433211 1267889999999998 678777777888999999
Q ss_pred EEEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHH
Q 014742 294 IGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372 (419)
Q Consensus 294 ivl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (419)
+++.+. +++.+++.|+++++|+++++|+++..|++..+... .. .+
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~-------------------------------~~-~~-- 208 (437)
T 2y27_A 163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG-------------------------------LD-PV-- 208 (437)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT-------------------------------CC-GG--
T ss_pred EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC-------------------------------CC-cc--
Confidence 998776 99999999999999999999999999876433210 00 00
Q ss_pred HHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 373 VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 373 ~l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+ +++|.+++||+++++++.+++++.+|+++++.||+||
T Consensus 209 -~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 209 -Q--------SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp -G--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred -c--------CCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 1 3899999999999999999999989999999999998
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.86 E-value=3.5e-21 Score=189.60 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=131.4
Q ss_pred CCCCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCceE
Q 014742 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSI 294 (419)
Q Consensus 216 ~~~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~l~~l~~G~~i 294 (419)
...++++++++|||||||.||+|+++|+++...+......+. ..++.++|++++.+|+ +|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR--AAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 446789999999999999999999999999876655443211 1277889999999998 5777776678889999999
Q ss_pred EEeCC-CHHHHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhccCchHHHHHHHHHHhhhhhhccCCCCCCchhhHHHHH
Q 014742 295 GFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 373 (419)
Q Consensus 295 vl~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (419)
++.+. +++.+++.|+++++|+++++|+++..|++..+... .. . .
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~-------------------------------~~-~---~ 210 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQG-------------------------------MD-P---A 210 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT-------------------------------CC-G---G
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcC-------------------------------CC-c---c
Confidence 98876 99999999999999999999999999876433210 00 0 0
Q ss_pred HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhhCCceeeeccCCC
Q 014742 374 FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGMVE 419 (419)
Q Consensus 374 l~~~~~~~g~~lr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE 419 (419)
+ +++|.+++||+++++++.+++++.+|+++++.||+||
T Consensus 211 ~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 211 E--------SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp G--------SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred c--------CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 1 3899999999999999999999999999999999998
No 37
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.82 E-value=1 Score=43.10 Aligned_cols=125 Identities=16% Similarity=0.065 Sum_probs=88.9
Q ss_pred CCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCc--hhHHHHHHHHHHcCCeEEee
Q 014742 57 PNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPL 132 (419)
Q Consensus 57 pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~vpl 132 (419)
++.++.+.. ..|.++..+ .+|...+...+..+++.+...|+.++|++...++-+ ...+...++++..|+..+++
T Consensus 89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 455554433 144444433 479999988888888888888999999999988853 33455578889999999877
Q ss_pred ccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCcc-----CCCCccEEEEecCCC
Q 014742 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANVS 184 (419)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 184 (419)
+. .+.+.+...++..++.+++.....+..+.+.... ....++.+++..+.-
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 222 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPW 222 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCC
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccC
Confidence 65 4788899999999999999887766655443211 124677777766543
No 38
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.69 E-value=0.99 Score=43.23 Aligned_cols=125 Identities=15% Similarity=0.044 Sum_probs=89.1
Q ss_pred CCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCc--hhHHHHHHHHHHcCCeEEee
Q 014742 57 PNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPL 132 (419)
Q Consensus 57 pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~vpl 132 (419)
++.++.+... .|.++..+ .+|...+...+..+++.+...|+.++|++...++-+ ...+...++++..|+..+++
T Consensus 91 ~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4555543321 45555544 469999998888888888888999999999988853 33455678888999998887
Q ss_pred ccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCcc-----CCCCccEEEEecCCC
Q 014742 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANVS 184 (419)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 184 (419)
+.. +.+.+...++..++.+++.....+..+.+.... ....++.+++.++.-
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 224 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPW 224 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCC
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcC
Confidence 654 788899999999999999887766655443211 124677777766543
No 39
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.67 E-value=0.89 Score=43.45 Aligned_cols=124 Identities=11% Similarity=-0.037 Sum_probs=89.2
Q ss_pred CCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC--chhHHHHHHHHHHcCCeEEeec
Q 014742 58 NNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSN--CPEWIIAMEACNSQAITYVPLY 133 (419)
Q Consensus 58 d~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n--~~~~~~~~lA~~~~G~~~vpl~ 133 (419)
+.++.+.. ..|.++..+ .+|...+...+..+++.+...|+.++|++....+- ....+..+++++..|+..++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 44554432 144444433 57999999988888888888899999999999874 3444556788899999988876
Q ss_pred cCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCcc-----CCCCccEEEEecCCC
Q 014742 134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANVS 184 (419)
Q Consensus 134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 184 (419)
. ...+.+...++..++.+++.....+..+.+.... ....++.+++.++.-
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 218 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPH 218 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCC
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcC
Confidence 5 4678899999999999999888766655543211 135677777766543
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=90.12 E-value=1.7 Score=43.17 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.4
Q ss_pred CCCceEEEEeCCCCC-CCCCeEEeechhHHH
Q 014742 218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVA 247 (419)
Q Consensus 218 ~~~~~~~i~~TSGtT-G~PK~V~~sh~~l~~ 247 (419)
.++.+.+..-||||| |.+|-+.+|...+-.
T Consensus 91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 456777889999999 779999999998755
No 41
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=83.70 E-value=9.2 Score=36.96 Aligned_cols=123 Identities=11% Similarity=-0.003 Sum_probs=86.1
Q ss_pred CCCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH-HHHHHHHHHcCCeEEee
Q 014742 56 IPNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (419)
Q Consensus 56 ~pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~vpl 132 (419)
.|+.++++..- .|.++..+ .+|...+...+..... ..++.++|++...+|-.-.+ +..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 45677765441 34444433 5798888877665544 35889999999988854332 34467788889988876
Q ss_pred ccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCC
Q 014742 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184 (419)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (419)
+ ..+.+.+...++..++..++.....+..+.+........++.++...+.-
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~l 286 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAKL 286 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSCC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCCC
Confidence 5 47889999999999999999998877766665444334677777666543
No 42
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=81.28 E-value=14 Score=35.66 Aligned_cols=99 Identities=9% Similarity=-0.042 Sum_probs=77.5
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++. .+..+|++.+...+..+...+.. .++.++|++...++-... ....+++++..|+..+..
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLR--DGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEec
Confidence 366777664 12579999999999998887744 377889999988876533 334578899999999988
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (419)
+. ..+.+...++..++..+++.+.....+.+
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhhHHh
Confidence 65 88899999999999999999887776544
No 43
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=80.97 E-value=21 Score=34.96 Aligned_cols=105 Identities=7% Similarity=-0.111 Sum_probs=79.3
Q ss_pred CCceEEEEeCCCC-CCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 219 KTNISTIMYTSGT-TGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 219 ~~~~~~i~~TSGt-TG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
++.++++....+. .+. .-.+|++.+...+..+...+.. .++.++|++...++-... .+..+++++..|+..+..
T Consensus 33 p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 33 GEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISR--KGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp TTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEcc
Confidence 5677776653221 111 2478999999999998887744 378889999988876533 334578899999999988
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (419)
+. ..+.+...++..++..+++.+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 65 88899999999999999999888776644
No 44
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=79.18 E-value=15 Score=35.80 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=78.4
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++... +| -.+|++.+...+..+...+.. .++.++|++...++-... .+..+++++..|+..+..
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEecc
Confidence 46777765432 22 368999999999998887744 378889999988877533 334578899999998887
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 329 (419)
+. ..+.+...++..++..+++.+.....+.+.
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~ 138 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKDF 138 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHH
Confidence 65 888999999999999999998877766543
No 45
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=79.16 E-value=5.9 Score=38.99 Aligned_cols=103 Identities=11% Similarity=0.025 Sum_probs=77.5
Q ss_pred CceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC
Q 014742 220 TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299 (419)
Q Consensus 220 ~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~ 299 (419)
+.++++.+..+.++ ..+|++.+...+..+...+... ++.++|++...++-..- .+..+++++..|+..+..+.
T Consensus 35 ~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~ 107 (550)
T 3rix_A 35 LVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRY--GLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPAND 107 (550)
T ss_dssp TSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCT
T ss_pred CCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHh--CCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCC
Confidence 34454433333333 3799999999999988877443 78889999988876433 33457889999999988765
Q ss_pred --CHHHHHHHhhhhcCeEEEecchHHHHHHHH
Q 014742 300 --DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329 (419)
Q Consensus 300 --~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 329 (419)
..+.+...++..++..+++.+.....+.+.
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 139 (550)
T 3rix_A 108 IYNERELLNSMNISQPTVVFVSKKGLQKILNV 139 (550)
T ss_dssp TCCHHHHHHHHHHHCCSEEEECGGGHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHH
Confidence 889999999999999999999887776553
No 46
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=79.13 E-value=27 Score=34.08 Aligned_cols=101 Identities=5% Similarity=-0.152 Sum_probs=76.4
Q ss_pred CCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeC
Q 014742 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (419)
Q Consensus 219 ~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~ 298 (419)
++.++++....+ ....+|++.+...+..+...+.. .++.++|++...++-..- .+..+++++..|+..+..+
T Consensus 32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRA--LGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECC
T ss_pred CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHhcCcEEEecC
Confidence 456666543211 24579999999999988887643 377889999988876532 3344788999999998886
Q ss_pred C--CHHHHHHHhhhhcCeEEEecchHHHHHH
Q 014742 299 G--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (419)
Q Consensus 299 ~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 327 (419)
. ..+.+...++..++..+++.+.....+.
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 5 7889999999999999999988766543
No 47
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=76.44 E-value=6 Score=36.57 Aligned_cols=124 Identities=9% Similarity=-0.070 Sum_probs=78.7
Q ss_pred CCCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCc--hhHHHHHHHHHHcCCeEEe
Q 014742 56 IPNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP 131 (419)
Q Consensus 56 ~pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~vp 131 (419)
.++.++.+... .|.++..+ .+|...+...+...++.+...|+.++|++..++|-+ .--+...+++...|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 34555554331 45455444 468888888888777777778999999999998862 2234445566888996555
Q ss_pred eccCCChh-----------------------HHHHHHhhcCceEEEEeCCChhhHhhcCc---cCCCCccEEEEecCC
Q 014742 132 LYDTLGAN-----------------------AVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANV 183 (419)
Q Consensus 132 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 183 (419)
.+ +++. .+...+++.++.+++.....+..+.+... .....++.+++....
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 242 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTE 242 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSC
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCcc
Confidence 43 3444 66778999999999988766555443311 112356667666654
No 48
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=75.40 E-value=30 Score=33.36 Aligned_cols=99 Identities=16% Similarity=0.023 Sum_probs=72.9
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++... .+..+|++.+...+..+...+.. .++.++|++...++-..- .+..+++++..|+..+..
T Consensus 15 ~p~~~a~~~~~-------~~~~~Ty~el~~~~~~~A~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVPA-------RGLRLTHAELRARVEAVAARLHA--DGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEETT-------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEcC-------CCceeEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEec
Confidence 35666765421 13579999999999988887744 377889999988876533 234578899999999888
Q ss_pred CC--CHHHHHHHhhhhcCeEEEe--cchHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSG--VPRVYDRI 326 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~--~P~~~~~l 326 (419)
+. ..+.+...++..++..++. .+.....+
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 65 7888899999999999988 66655444
No 49
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=74.63 E-value=13 Score=36.43 Aligned_cols=123 Identities=11% Similarity=-0.013 Sum_probs=81.7
Q ss_pred CCCceeeeeccCCCCCce--eEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH--HHHHHHHHHcCCeEEeec
Q 014742 58 NNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--IIAMEACNSQAITYVPLY 133 (419)
Q Consensus 58 d~~ai~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~--~~~~lA~~~~G~~~vpl~ 133 (419)
+.++++..- .|.++.. ..+|...+...+......+...++.++|++...+|-.-.+ ...+++++ .|+..+..+
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 666655431 3434333 3579998877766554433336888999999888855433 23356666 898888775
Q ss_pred cCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCc---cCCCCccEEEEecCCC
Q 014742 134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANVS 184 (419)
Q Consensus 134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 184 (419)
..+.+.+...+++.++.+++.....+..+.+... .....++.+++..+.-
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l 321 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPL 321 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCC
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccC
Confidence 5788999999999999999998877666654322 1235667777665543
No 50
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=74.12 E-value=31 Score=34.76 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=75.9
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.+|++.... ..| ....+|++.+...+..+...+.. ..++.++|++...+|..-- ....+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~-~~Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTY-SMGVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHH-TSCCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEee
Confidence 467778775432 122 23579999999999998887731 2378899999999987643 344578999999998887
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~ 322 (419)
.. ..+.+...|+..++.++++....
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 65 88999999999999999987654
No 51
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=73.92 E-value=33 Score=33.66 Aligned_cols=96 Identities=8% Similarity=-0.009 Sum_probs=73.1
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++.. +..+|++.+...+..+...+.. .++.++|++...++-..- .+..+++++..|+..+..
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIE--KGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEe
Confidence 3566676531 2469999999998888876643 377889999888876532 234478899999999888
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDR 325 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~ 325 (419)
+. ..+.+...++..++..+++.+.....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 65 78889999999999999998876543
No 52
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=73.31 E-value=44 Score=32.80 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=76.9
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++.... .| ....+|++.+...+..+...+... .++.++|++...++-... .+..+++++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~-~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGA-CGLQRGDRVAVVLPRVPE-WWLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTT-TCCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHc-cCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCeEEEec
Confidence 456777765421 11 246799999999998888866321 167789999888876533 234478899999998887
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 327 (419)
+. ..+.+...++..++..+++.+.....+.
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 130 TIQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 65 7888999999999999999888766553
No 53
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=72.43 E-value=35 Score=33.25 Aligned_cols=123 Identities=7% Similarity=-0.128 Sum_probs=84.1
Q ss_pred CCCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHH---HHHHHHHcCCeEE
Q 014742 56 IPNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII---AMEACNSQAITYV 130 (419)
Q Consensus 56 ~pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~v 130 (419)
.|+.++++..- .|.++..+ .+|...+...+...... .++.++|++...+|-.-.+-. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 45666665431 34444333 57999888777655544 378899999998886544322 4788889999888
Q ss_pred eeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcC---ccCCCCccEEEEecCCC
Q 014742 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANVS 184 (419)
Q Consensus 131 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 184 (419)
..+ ..+.+.+...+++.++.+++.....+..+.+.. ......++.+++.++.-
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l 310 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKF 310 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCC
Confidence 764 467889999999999999998877665554432 22345677777766543
No 54
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=71.66 E-value=27 Score=33.74 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=68.8
Q ss_pred EeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEE
Q 014742 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMF 316 (419)
Q Consensus 239 ~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l 316 (419)
.+|++.+...+..+...+... ++.++|++...++-... .+..+++++..|+..+..+. ..+.+...++..++..+
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 699999999999988877443 78889999988876533 33457889999999988865 88899999999999999
Q ss_pred EecchHHHHH
Q 014742 317 SGVPRVYDRI 326 (419)
Q Consensus 317 ~~~P~~~~~l 326 (419)
.+.+.....+
T Consensus 105 i~~~~~~~~~ 114 (503)
T 4fuq_A 105 VCDPSKRDGI 114 (503)
T ss_dssp EECGGGTTTT
T ss_pred EECchhhHHH
Confidence 9988765544
No 55
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=70.93 E-value=46 Score=31.57 Aligned_cols=107 Identities=9% Similarity=-0.025 Sum_probs=77.7
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++.........-....+|++.+...+..+...+... +. ++|++...++-.-- .+..+++++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEee
Confidence 467778776543211111346899999999999998877433 44 78999888776533 234578899999998877
Q ss_pred CC-----CHHHHHHHhhhhcCeEEEecchHHHHHHH
Q 014742 298 RG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (419)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (419)
+. ..+.+...++..++..+++.+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 43 46788889999999999999988776654
No 56
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=70.46 E-value=32 Score=34.35 Aligned_cols=124 Identities=10% Similarity=0.050 Sum_probs=85.7
Q ss_pred CCCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH-HHHHHHHHHcCCeEEee
Q 014742 56 IPNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (419)
Q Consensus 56 ~pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~vpl 132 (419)
.|+.+|.+..- .|.++..+ .+|...+...+. .....++.+++++....+-+-+. +..+++.+..|+..+..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 35666665331 45454444 478877754432 22345888999999998865443 34467888888887765
Q ss_pred c-cCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCccCCCCccEEEEecCCCh
Q 014742 133 Y-DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185 (419)
Q Consensus 133 ~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (419)
+ ...+++.+...+++.++..++.....+..+.+........++.+++.++.-.
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l~ 289 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDILS 289 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcCC
Confidence 3 3567889999999999999999887777666655555577888888776543
No 57
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=69.01 E-value=26 Score=33.96 Aligned_cols=99 Identities=4% Similarity=-0.124 Sum_probs=75.5
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++.. | ..+|++.+...+..+...+.. .++.++|++...++-... .+..+++++..|+..+..
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRT--LGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEec
Confidence 3566666532 1 368999999999988887643 367889999988876533 234578899999998887
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (419)
+. ..+.+...++..++..+++.+.....+.+
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 136 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQ 136 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHHH
Confidence 65 88899999999999999999887765543
No 58
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=68.69 E-value=42 Score=33.68 Aligned_cols=98 Identities=9% Similarity=0.085 Sum_probs=74.3
Q ss_pred CCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeC
Q 014742 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (419)
Q Consensus 219 ~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~ 298 (419)
++.++++.... .+| ....+|++.+...+..+...+.. .++.++|++...+|-.-- ....+++++..|+..+...
T Consensus 90 pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~~--~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 90 GDRTAIIWEGD-DTS--QSKHISYRELHRDVCRFANTLLD--LGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVIF 163 (652)
T ss_dssp TTSEEEEEECS-STT--CEEEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECC
T ss_pred CCceEEEEEcC-CCC--ceeEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHH-HHHHHHHHHHcCcEEEecC
Confidence 56777765422 122 24579999999999988887644 378899999999887643 3445788999999988876
Q ss_pred C--CHHHHHHHhhhhcCeEEEecchH
Q 014742 299 G--DVRYLMEDIQELKPTMFSGVPRV 322 (419)
Q Consensus 299 ~--~~~~~~~~i~~~~~t~l~~~P~~ 322 (419)
. .++.+...++..++.++++....
T Consensus 164 ~~~~~~~l~~~l~~~~~~~li~~~~~ 189 (652)
T 1pg4_A 164 GGFSPEAVAGCIIDSSSRLVITADEG 189 (652)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESEE
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence 5 88999999999999999886653
No 59
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=68.68 E-value=22 Score=32.62 Aligned_cols=127 Identities=13% Similarity=0.010 Sum_probs=78.7
Q ss_pred HHHHHHhCCCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchh-HHHHHHHHHHc
Q 014742 49 FCDSAKRIPNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQ 125 (419)
Q Consensus 49 l~~~a~~~pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~-~~~~~lA~~~~ 125 (419)
++...+.+.|.+|++..- .|.++..+ .+|...+...+...+.. .++.++|++...+|-.-. .+..++..+..
T Consensus 28 ~~~~~~w~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~ 102 (358)
T 4gs5_A 28 YDFMEKWLGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMEL 102 (358)
T ss_dssp HHHHHHHHHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred hhHhhccCCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHh
Confidence 333344456777765331 45555544 57999988776655544 488999999998885433 23445566777
Q ss_pred CCeEEeeccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCc--cCCCCccEEEEecCC
Q 014742 126 AITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP--RCCLYLKTIVSFANV 183 (419)
Q Consensus 126 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 183 (419)
|+..+...+... ....++..++..+......+..+.+... .....++.+++....
T Consensus 103 g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~ 159 (358)
T 4gs5_A 103 DWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAP 159 (358)
T ss_dssp TCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSC
T ss_pred CcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccC
Confidence 777776665433 2446788889998887766555544322 223456666666554
No 60
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=68.06 E-value=36 Score=33.59 Aligned_cols=98 Identities=11% Similarity=-0.036 Sum_probs=75.4
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++..... | ....+|++.+...+..+...+.. .++.++|++...++-.-- .+..+++++..|+..+-.
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~--~Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVK--HGIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEEEeC
Confidence 4678887765321 1 24689999999999998887743 378899999988876533 234578889999998887
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~ 322 (419)
+. ..+.+...++..++..+++.+..
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~~~ 168 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIAED 168 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEESST
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecch
Confidence 65 88899999999999999987654
No 61
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=67.99 E-value=28 Score=33.58 Aligned_cols=123 Identities=8% Similarity=-0.033 Sum_probs=80.9
Q ss_pred CCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH-HHHHHHHHHcCCeEEeec
Q 014742 57 PNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPLY 133 (419)
Q Consensus 57 pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~vpl~ 133 (419)
++.++++..- .|.++..+ .+|...+...+..... ..++.++|++...+|-+..+ +..+++++..|+..+.++
T Consensus 143 ~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 217 (512)
T 3fce_A 143 GDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217 (512)
T ss_dssp TTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECC
Confidence 4555654331 44444433 5798888876665444 35889999999999855433 445788889999888876
Q ss_pred cC--CChhHHHHHHhhcCceEEEEeCCChhhHhhcCc---cCCCCccEEEEecCCC
Q 014742 134 DT--LGANAVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANVS 184 (419)
Q Consensus 134 ~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 184 (419)
.. ..+..+...++..++.+++.....+..+..... .....++.++...+.-
T Consensus 218 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l 273 (512)
T 3fce_A 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVL 273 (512)
T ss_dssp HHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCC
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcC
Confidence 53 567889999999999999988766655443321 2234567777666543
No 62
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=67.56 E-value=41 Score=33.02 Aligned_cols=94 Identities=9% Similarity=-0.024 Sum_probs=72.0
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++.- +-.+|++.+...+..+...+.. .++.++|++...++-... ....+++++..|+..+..
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVG--LGVAPGTLVGVHLERGFD-MVVALLAVLKAGGGYTML 155 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHH-HHHHHHHHHHHCCEEEEc
Confidence 3566776541 2369999999999998887744 378889999988876533 234578899999999888
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVY 323 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~ 323 (419)
+. ..+.+...++..++..+++.....
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~ 183 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPLS 183 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTTT
T ss_pred CCCChHHHHHHHHHhcCCCEEEecchhh
Confidence 65 888899999999999998876543
No 63
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=67.38 E-value=34 Score=33.10 Aligned_cols=100 Identities=7% Similarity=-0.135 Sum_probs=76.4
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++.. | +...+|++.+...+..+...+.. .++.++|++...++-..- .+..+++++..|+..+..
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTA--LGIAKGDRVALLMPNSVE-FCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEcCCCHH-HHHHHHHHHHhCcEEEec
Confidence 3566776653 1 12579999999999998887744 378889999988886532 334578899999999988
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 327 (419)
+. ..+.+...++..++..+.+.+.....+.
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSAPVID 130 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchHHHHH
Confidence 65 8888999999999999999887765543
No 64
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=65.45 E-value=43 Score=32.62 Aligned_cols=93 Identities=15% Similarity=0.069 Sum_probs=71.6
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++. + .-.+|++.+...+..+...+.. .++.++|++...++-..- .+..+++++..|+..+..
T Consensus 43 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 43 HPHSLAIIC---G------ERQLSYIELDRLSTNLATRLAE--KGLGKGDTALVQLPNVAE-FYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEECCCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEc---C------CCceeHHHHHHHHHHHHHHHHH--CCCCCCCEEEEECCCCHH-HHHHHHHHHHhCcEEecC
Confidence 467777763 1 3479999999999998887744 378889999988876432 334578899999988876
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~ 322 (419)
+. ..+.+...++..++..+++.+..
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 137 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQH 137 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTS
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEcccc
Confidence 54 78889999999999999987654
No 65
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=65.38 E-value=33 Score=33.13 Aligned_cols=122 Identities=7% Similarity=-0.062 Sum_probs=82.2
Q ss_pred CCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH-HHHHHHHHHcCCeEEeec
Q 014742 57 PNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPLY 133 (419)
Q Consensus 57 pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~vpl~ 133 (419)
++.++++..- .|.++..+ .+|...+...+..+.. ..++.++|++....|-...+ +..+++++..|+..+...
T Consensus 142 ~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 216 (511)
T 3e7w_A 142 EHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVT 216 (511)
T ss_dssp TTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECC
T ss_pred CCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 4556655331 45455444 5798888777665544 35788999999998865443 345778899999888775
Q ss_pred cC--CChhHHHHHHhhcCceEEEEeCCChhhHhhcC---ccCCCCccEEEEecCC
Q 014742 134 DT--LGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANV 183 (419)
Q Consensus 134 ~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 183 (419)
.. ..+..+...+++.++.+++.....+..+.... ......++.++..++.
T Consensus 217 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 217 KDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp HHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred hhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 53 56788899999999999998877666554432 1223456666666544
No 66
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=62.13 E-value=43 Score=35.48 Aligned_cols=100 Identities=14% Similarity=0.044 Sum_probs=76.9
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++... +| ..+|++.+...+..+...+.. .++.++|++...++-... .+..+++++..|+..+..
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHK--LGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEee
Confidence 46777776432 22 468999999999988887744 378889999988886532 334578899999999988
Q ss_pred CC--CHHHHHHHhhhhcCeEEEecchHHHHHH
Q 014742 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (419)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 327 (419)
+. .++.+...++..++.++++.+.....+.
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 175 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKIK 175 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTSH
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHHH
Confidence 65 8889999999999999999887665543
No 67
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=61.64 E-value=73 Score=31.18 Aligned_cols=102 Identities=8% Similarity=0.011 Sum_probs=75.6
Q ss_pred CCCceEEEEeCCCCCCCCCeEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEe
Q 014742 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~ 297 (419)
.++.++++....+ ..-.+|++.+...+..+...+... ++.++|++...++-... .+..+++++..|+..+..
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~--gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 95 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAE--GAKPGDRVLLLFAPGLP-LIQAFLGCLYAGCIAVPI 95 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCchh-HHHHHHHHHHhCcEEEEe
Confidence 4677777655411 245799999999999988877443 77889999988876533 334578899999998887
Q ss_pred CC-----CHHHHHHHhhhhcCeEEEecchHHHHHH
Q 014742 298 RG-----DVRYLMEDIQELKPTMFSGVPRVYDRIY 327 (419)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~ 327 (419)
+. ..+.+...+...++..+...+.....+.
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred cCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 64 2356777889999999999887776653
No 68
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=61.07 E-value=46 Score=30.22 Aligned_cols=66 Identities=6% Similarity=0.004 Sum_probs=47.4
Q ss_pred HHHhCC-CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 93 AMRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 93 ~L~~~g-~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
...+.| +++|+.|.+....+=--..+.++|...|..++.+-|......-...++..++.+++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344455 488888655555555566677788888987766656555566678889999999999864
No 69
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=59.93 E-value=52 Score=31.68 Aligned_cols=81 Identities=9% Similarity=-0.061 Sum_probs=63.4
Q ss_pred EEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeE
Q 014742 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (419)
Q Consensus 238 V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~ 315 (419)
-.+|++.+...+..+...+.. .++.++|++...++-..- .+..+++++..|+..+..+. ..+.+...++..++..
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~--~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDS--LALLAKSPVLVFGAQTYD-MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH--TCCCTTCCEEEEECSSHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 458999999999888887643 367788988887766432 23447889999999888755 8889999999999999
Q ss_pred EEecch
Q 014742 316 FSGVPR 321 (419)
Q Consensus 316 l~~~P~ 321 (419)
+++...
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 988654
No 70
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=56.47 E-value=65 Score=29.37 Aligned_cols=71 Identities=8% Similarity=-0.017 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 88 IRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 88 ~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
+.+.....+--+++|++..+....+---+.+.++|..+|..++..-|...+.+....++..++++++++..
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33333333333678877667777777778888999999997776667666777788899999999999754
No 71
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=54.91 E-value=81 Score=31.20 Aligned_cols=123 Identities=14% Similarity=-0.028 Sum_probs=82.5
Q ss_pred CCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHH---HHHHHHHcCCeEEe
Q 014742 57 PNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII---AMEACNSQAITYVP 131 (419)
Q Consensus 57 pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~vp 131 (419)
|+.+|.+..- .|.++..+ .+|...+...+......+ ++.+++++....|-...+-. .+++++..|+..+.
T Consensus 183 ~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 4566654331 34444333 579988887776655544 78899999999885544433 36788888988887
Q ss_pred eccCCChhHHHHHHhhcCceEEEEeCCChhhHhhcCc-----cCCCCccEEEEecCCCh
Q 014742 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP-----RCCLYLKTIVSFANVSS 185 (419)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 185 (419)
... .....+...++..++.++......+..+.+... .....++.+++.++.-.
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~ 315 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLS 315 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCC
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCC
Confidence 654 577888889999999999988766655544221 13456777777666443
No 72
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=53.83 E-value=56 Score=27.55 Aligned_cols=43 Identities=14% Similarity=-0.095 Sum_probs=31.7
Q ss_pred HHHHHHHHHH-HHHhcCceEEEeCC--CHHHHHHHhhhhcCeEEEe
Q 014742 276 AHIYDQIIET-HCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSG 318 (419)
Q Consensus 276 ~h~~g~~~~l-~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l~~ 318 (419)
.|..|..++- .--..|..++.... .++.+.+.+.+++++++..
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 3777776633 33456777766543 8999999999999998777
No 73
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=53.38 E-value=94 Score=30.19 Aligned_cols=87 Identities=9% Similarity=-0.115 Sum_probs=68.6
Q ss_pred EEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC--C-------HHHHHHHh
Q 014742 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--D-------VRYLMEDI 308 (419)
Q Consensus 238 V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~--~-------~~~~~~~i 308 (419)
-.+|++.+...+..+...+.. .++.++|++...++-..- .+..+++++..|+..+..+. . .+.+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLS--LNLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH--TCCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 579999999999998887744 377889999988886533 33457889999999888754 2 57788889
Q ss_pred hhhcCeEEEecchHHHHHH
Q 014742 309 QELKPTMFSGVPRVYDRIY 327 (419)
Q Consensus 309 ~~~~~t~l~~~P~~~~~l~ 327 (419)
+..++..+.........+.
T Consensus 125 ~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHHCCSEEEECGGGHHHHH
T ss_pred HhcCCCEEEecHHHHHHHH
Confidence 9999999999888766553
No 74
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=48.89 E-value=1.4e+02 Score=28.89 Aligned_cols=100 Identities=11% Similarity=-0.043 Sum_probs=70.5
Q ss_pred CCCceEEEEeCCCCCCCCC--eEEeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEE
Q 014742 218 KKTNISTIMYTSGTTGEPK--GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG 295 (419)
Q Consensus 218 ~~~~~~~i~~TSGtTG~PK--~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~iv 295 (419)
.++.++++... +..+..+ .-.+|++.+...+..+...+... +. ++|++...++-... .+..+++++..|+..+
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHA--SL-HGRAIAVSLDRSLI-AFAIIVGIMKSGNTYV 107 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHT--TC-SSCEEEEECCSCHH-HHHHHHHHHHTTCEEE
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEeCCCHH-HHHHHHHHHHhCCEEE
Confidence 46677776543 2222222 35799999999999988876442 45 68999888776533 2344788999999998
Q ss_pred EeCC--CHHHHHHHhhhhcCeEEEecchH
Q 014742 296 FWRG--DVRYLMEDIQELKPTMFSGVPRV 322 (419)
Q Consensus 296 l~~~--~~~~~~~~i~~~~~t~l~~~P~~ 322 (419)
..+. ..+.+...++..++..+++....
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~ 136 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDNN 136 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEcccc
Confidence 8865 78888899999999988876543
No 75
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=48.24 E-value=51 Score=29.83 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=51.2
Q ss_pred eeHHHHHHHHHHH---HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEE
Q 014742 78 LTYQEVYDAAIRF---GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (419)
Q Consensus 78 ~Ty~el~~~~~~l---a~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 154 (419)
+++.+..-..... .+.++..++++|++|++....+.-..++.++....|+.++.++.+ .+ -..+.+..++..+|
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~-r~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QD-KLNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HH-HHHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HH-HhhhhhhcCCeEEE
Confidence 5666654333222 223555689999999999988777777777777778877776653 33 34566777888777
Q ss_pred EeC
Q 014742 155 VQE 157 (419)
Q Consensus 155 ~~~ 157 (419)
-..
T Consensus 214 ~~~ 216 (348)
T 4eez_A 214 NSG 216 (348)
T ss_dssp EC-
T ss_pred eCC
Confidence 554
No 76
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=44.96 E-value=4.4 Score=40.38 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=25.8
Q ss_pred CCCceEEEEeCCCCC-CCCCeEEeechhHHH
Q 014742 218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVA 247 (419)
Q Consensus 218 ~~~~~~~i~~TSGtT-G~PK~V~~sh~~l~~ 247 (419)
.++.+..+.-||||| |.||.+.+|...+-.
T Consensus 97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 97 SAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred CCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 466778899999999 889999999998765
No 77
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=43.65 E-value=1.6e+02 Score=28.09 Aligned_cols=103 Identities=9% Similarity=-0.034 Sum_probs=71.1
Q ss_pred CCCCCceeeeeccCCCCCcee--EeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH--HHHHHHHHHcCCeEEe
Q 014742 56 IPNNQMLGGRKVSDGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--IIAMEACNSQAITYVP 131 (419)
Q Consensus 56 ~pd~~ai~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~--~~~~lA~~~~G~~~vp 131 (419)
.|+.++++..- .|.++..+ .+|...+...+..+...+ ++.++|++...+|-.-.+ +..+++.+..|+..+.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45666665431 45455444 579999988887766655 788999998888754332 3347888899998886
Q ss_pred eccCCChhHHHHHHhhcCceEEEEeCCChhhHhh
Q 014742 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165 (419)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 165 (419)
. +....+.+...+ ..++..++.....+..+.+
T Consensus 228 ~-~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 L-GRFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp C-SSCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred C-CCCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 6 456777777777 6788888888766655544
No 78
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=40.72 E-value=6.3 Score=39.04 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=25.5
Q ss_pred CCCceEEEEeCCCCC-CCCCeEEeechhHHH
Q 014742 218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVA 247 (419)
Q Consensus 218 ~~~~~~~i~~TSGtT-G~PK~V~~sh~~l~~ 247 (419)
.++.+....-||||| |.+|-+.+|...+-.
T Consensus 96 ~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 96 TGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 456778889999999 779999999987755
No 79
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=40.27 E-value=1.6e+02 Score=26.26 Aligned_cols=65 Identities=9% Similarity=0.101 Sum_probs=43.9
Q ss_pred HHhCC-CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 94 L~~~g-~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
+.+.| +++|+...+....+=--..+.++|...|..++.+-|......-...++..++.+++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34455 456754444455555556667778899987766655555566677889999999999864
No 80
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=39.26 E-value=1.6e+02 Score=27.80 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=46.2
Q ss_pred HHhCC-CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeC
Q 014742 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (419)
Q Consensus 94 L~~~g-~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (419)
..+.| +.+|....+....+=--..+.++|...|.-++.+-|.....+-...++..++.+++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34556 46775555555556566667778999999777665666666777888999999999975
No 81
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=39.14 E-value=89 Score=28.64 Aligned_cols=61 Identities=11% Similarity=-0.036 Sum_probs=40.0
Q ss_pred HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccC-----CChhHHHHHHhhcC--ceEEEEe
Q 014742 93 AMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-----LGANAVEFIINHAE--VSIAFVQ 156 (419)
Q Consensus 93 ~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~-----~~~~~l~~~l~~~~--~~~vi~~ 156 (419)
.|...++++||.|.+-.+....+ .-++...|+.++.++.+ .+.+.+...+..-+ +++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 34445788999998877655543 34567789877766543 46777887774434 6777643
No 82
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=37.56 E-value=2e+02 Score=25.53 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=42.6
Q ss_pred HHHhCCC-CCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 93 AMRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 93 ~L~~~g~-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
.+.+.|. ++|+.|.. ...+=--..+.++|...|..++.+-|......-...++..++.+++++..
T Consensus 57 ~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 57 AAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 3444553 66776655 34444445556677799987766555545556667788999999999863
No 83
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=35.94 E-value=1.5e+02 Score=26.56 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=44.4
Q ss_pred HHHhC--CCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 93 AMRSR--GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 93 ~L~~~--g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
.|.+. ++++|++|++......-..++.+|-..-|..++.++.+ .+ -...+++.+++.++...+
T Consensus 161 ~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~--~~-~~~~~~~lGa~~~i~~~~ 225 (345)
T 3jv7_A 161 AISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD--DD-RLALAREVGADAAVKSGA 225 (345)
T ss_dssp HHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC--HH-HHHHHHHTTCSEEEECST
T ss_pred HHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--HH-HHHHHHHcCCCEEEcCCC
Confidence 34553 78999999999987677777777776657777766552 33 344567788888876654
No 84
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=34.46 E-value=1.8e+02 Score=26.47 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=40.2
Q ss_pred HHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccC----CChhHHHHHHhhc--CceEEEEeC
Q 014742 94 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT----LGANAVEFIINHA--EVSIAFVQE 157 (419)
Q Consensus 94 L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~--~~~~vi~~~ 157 (419)
++..++++||.|.+..+....+.. ++...|+.++.++.+ .+.+.+...++.. ++++|++..
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 333456889999888887766643 344578877766543 4567788877754 567777653
No 85
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=33.96 E-value=2.2e+02 Score=25.12 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=41.8
Q ss_pred HHHhCCC-CCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 93 AMRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 93 ~L~~~g~-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
.+.+.|. ++|+.|.. ...+=--..+.++|...|.-++.+-|......-...++..++.+++++..
T Consensus 55 ~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 55 AAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3344453 56666554 33343344556677889987665555444555667789999999999864
No 86
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=33.10 E-value=1.5e+02 Score=22.18 Aligned_cols=53 Identities=9% Similarity=-0.014 Sum_probs=40.7
Q ss_pred HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEee--ccCCChhHHHH
Q 014742 91 GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL--YDTLGANAVEF 143 (419)
Q Consensus 91 a~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl--~~~~~~~~l~~ 143 (419)
+.+|.+.|+.++..+.+-..+..+.+.++-=+++.|...+.+ -+..+..+.+.
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RR 101 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQ 101 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHH
Confidence 678899999988888888888889999999999998754444 34566555433
No 87
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=33.07 E-value=1.6e+02 Score=26.32 Aligned_cols=56 Identities=4% Similarity=-0.049 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccC----CChhHHHHHHhhcCceEEEEe
Q 014742 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT----LGANAVEFIINHAEVSIAFVQ 156 (419)
Q Consensus 100 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~~~~~vi~~ 156 (419)
++||.|.+..+..+.+.....++...|+.++.++.+ .+.+++...++. ++++|++.
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 466766665554444443333444556655544332 344555555543 45555554
No 88
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=32.72 E-value=1.5e+02 Score=26.54 Aligned_cols=76 Identities=9% Similarity=0.055 Sum_probs=48.2
Q ss_pred eeHHHHHHHHHH---HHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEE
Q 014742 78 LTYQEVYDAAIR---FGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (419)
Q Consensus 78 ~Ty~el~~~~~~---la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 154 (419)
+++.+....... .-+.|...++++|++|++......-.+++.+|- ..|+.++.++. +.+. ...+++.++..++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~-~~~~~~lGa~~~i 215 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAK-LNLARRLGAEVAV 215 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHH-HHHHHHTTCSEEE
T ss_pred CCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHH-HHHHHHcCCCEEE
Confidence 666665422211 123455668999999999988666766666665 46887666654 2333 3456778888777
Q ss_pred EeC
Q 014742 155 VQE 157 (419)
Q Consensus 155 ~~~ 157 (419)
...
T Consensus 216 ~~~ 218 (340)
T 3s2e_A 216 NAR 218 (340)
T ss_dssp ETT
T ss_pred eCC
Confidence 554
No 89
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=32.63 E-value=1.5e+02 Score=26.81 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=43.0
Q ss_pred HHHh--CCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 93 AMRS--RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 93 ~L~~--~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
.|.+ .++++|++|++......-..++.+|-...|+.++.++. +.+. ...+++.+++.++...+
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~-~~~~~~lGa~~vi~~~~ 240 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEK-LKLAERLGADHVVDARR 240 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHH-HHHHHHTTCSEEEETTS
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHH-HHHHHHhCCCEEEeccc
Confidence 4555 78999999999999766777777666543886666654 2333 34456788888776543
No 90
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=32.06 E-value=1.5e+02 Score=26.21 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=47.2
Q ss_pred eeHHHHHHHHHH---HHHHHHhCCCCCCCeEEEEc-CCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEE
Q 014742 78 LTYQEVYDAAIR---FGSAMRSRGVNPGDRCGIYG-SNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (419)
Q Consensus 78 ~Ty~el~~~~~~---la~~L~~~g~~~gd~V~l~~-~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 153 (419)
+++.+..-.... ..+.|...++++|++|++.. ....-..++.+| ...|+.++.+. +.++ ...+++.++..+
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~ 200 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAEQC 200 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCSEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCCEE
Confidence 566665543222 12334567899999999997 555666655555 45688766553 3444 566777888876
Q ss_pred EEeC
Q 014742 154 FVQE 157 (419)
Q Consensus 154 i~~~ 157 (419)
+...
T Consensus 201 i~~~ 204 (321)
T 3tqh_A 201 INYH 204 (321)
T ss_dssp EETT
T ss_pred EeCC
Confidence 6543
No 91
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=31.38 E-value=81 Score=28.53 Aligned_cols=61 Identities=8% Similarity=-0.002 Sum_probs=39.7
Q ss_pred CCCCCCeEEEEcCCch------hHHHHHH-HHHHcCCeEEeeccC------------CChhHHHHHHhhcCceEEEEeCC
Q 014742 98 GVNPGDRCGIYGSNCP------EWIIAME-ACNSQAITYVPLYDT------------LGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 98 g~~~gd~V~l~~~n~~------~~~~~~l-A~~~~G~~~vpl~~~------------~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
-+++||+|++++|.+. +-+-... -+-..|.-++.-..- ...+++..++..-+.+.|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4789999999999753 1122222 233457766643221 13457888888889999999864
No 92
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=31.09 E-value=2.8e+02 Score=24.68 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=44.5
Q ss_pred HHhCC-CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 94 L~~~g-~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
..+.| +++++.|.... .+---..+.++|...|.-++.+-|..........++..++.+++++..
T Consensus 64 a~~~g~l~~~~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEPT-SGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 46777766543 344445666777888987776656556666678889999999999864
No 93
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=30.53 E-value=2.3e+02 Score=25.54 Aligned_cols=63 Identities=11% Similarity=-0.001 Sum_probs=41.5
Q ss_pred HhCC-CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 95 RSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 95 ~~~g-~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
.+.| +++|+.|..... +=--..+.++|...|.-++.+-|......-...++..++.+++++..
T Consensus 70 ~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 70 IKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3334 467776655543 33344556677789986665555545566677889999999999864
No 94
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=30.42 E-value=2.1e+02 Score=26.71 Aligned_cols=62 Identities=8% Similarity=-0.040 Sum_probs=32.6
Q ss_pred EEEcCCchhHHHHH-HHHHHcCCeEEeeccCCChhH--HHHHHhhcCceEEEEeCCChhhHhhcC
Q 014742 106 GIYGSNCPEWIIAM-EACNSQAITYVPLYDTLGANA--VEFIINHAEVSIAFVQENKIPSILSCL 167 (419)
Q Consensus 106 ~l~~~n~~~~~~~~-lA~~~~G~~~vpl~~~~~~~~--l~~~l~~~~~~~vi~~~~~~~~~~~~~ 167 (419)
++++.++.+.+... .++...|-.++.-++.+.... +...++..+.++++++....+.+.+.+
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai 164 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHAC 164 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhh
Confidence 45555665554433 344455555544444443221 222566677777777766655555544
No 95
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=30.20 E-value=1.5e+02 Score=25.87 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhH
Q 014742 48 FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (419)
Q Consensus 48 ~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~ 115 (419)
++....+..|+...+++- |....++-..|.+++.+.+.+.++.|.+.|. |.|.+. =|+...
T Consensus 20 v~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~---~~IVIA-CNTa~~ 80 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI---KMLVIA-CNTATA 80 (269)
T ss_dssp HHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC---SEEEEC-CHHHHH
T ss_pred HHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---CEEEEe-CCCccH
Confidence 466677788999999887 7777777789999999999999999998765 344444 455554
No 96
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=29.05 E-value=2.9e+02 Score=24.18 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=41.4
Q ss_pred HHhCC-CCCCCeEEEEcC-CchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 94 MRSRG-VNPGDRCGIYGS-NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 94 L~~~g-~~~gd~V~l~~~-n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
+.+.| +++|+.+.++.. .+=--..+.++|...|.-++.+-|......-...++..++.+++++..
T Consensus 51 a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 466773223333 333334556677899987666555445566677889999999999875
No 97
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=28.88 E-value=1e+02 Score=28.06 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=39.8
Q ss_pred CCCCCCeEEEEcCCchh------HHHHHH-HHHHcCCeEEeecc------------CCChhHHHHHHhhcCceEEEEeCC
Q 014742 98 GVNPGDRCGIYGSNCPE------WIIAME-ACNSQAITYVPLYD------------TLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 98 g~~~gd~V~l~~~n~~~------~~~~~l-A~~~~G~~~vpl~~------------~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
-+++||+|++++|.+.- -+-.-. -+-..|.-++.-.. ....+++..++..-+++.|++...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47899999999998842 222222 23346777664311 112356778888888999999874
No 98
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=27.82 E-value=2.1e+02 Score=23.55 Aligned_cols=55 Identities=7% Similarity=-0.135 Sum_probs=42.3
Q ss_pred eEEEEcCC----chhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 104 RCGIYGSN----CPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 104 ~V~l~~~n----~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
+|.+.+.. .....+....+...|.-++-+..+.+.+++...++..+|++|..+..
T Consensus 90 ~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 45554433 23444555566688999999999999999999999999999998864
No 99
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=27.79 E-value=3.1e+02 Score=24.22 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=36.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeec--cC----CChhHHHHHHhh----cCceEEEEeC
Q 014742 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLY--DT----LGANAVEFIINH----AEVSIAFVQE 157 (419)
Q Consensus 99 ~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~--~~----~~~~~l~~~l~~----~~~~~vi~~~ 157 (419)
+++||.|.+..+.-..+... +...|+.++.++ .+ .+.+.+...++. -++++|++..
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 46788888877665544433 667787776665 32 356778777764 3566776664
No 100
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=27.74 E-value=2e+02 Score=25.82 Aligned_cols=56 Identities=9% Similarity=0.029 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccC-------CChhHHHHHHhhcCceEEEEeC
Q 014742 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-------LGANAVEFIINHAEVSIAFVQE 157 (419)
Q Consensus 99 ~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~-------~~~~~l~~~l~~~~~~~vi~~~ 157 (419)
.++||.|.+..+.-.. ...++...|+.++.++.. .+.+.+...++..++++|++..
T Consensus 106 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNM---FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp SCTTCEEEECSSCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CCCCCeEEECCCCcHH---HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 3567777665554433 334555667766655442 5667777777655677766554
No 101
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=27.22 E-value=1.7e+02 Score=26.42 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=27.5
Q ss_pred CCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccC-----CChhHHHHHHhhcCceEEEEe
Q 014742 97 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-----LGANAVEFIINHAEVSIAFVQ 156 (419)
Q Consensus 97 ~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~-----~~~~~l~~~l~~~~~~~vi~~ 156 (419)
.++++||.|.+..+....+. -++...|+.++.++.+ .+.+.+...++. ++++|++.
T Consensus 74 ~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 74 LGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp TTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred cCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 34566776666555443332 3444556655544321 344555555543 45555543
No 102
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=27.00 E-value=1.8e+02 Score=26.04 Aligned_cols=73 Identities=11% Similarity=-0.029 Sum_probs=45.7
Q ss_pred eeHHHHHHHHHHH---HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEE
Q 014742 78 LTYQEVYDAAIRF---GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (419)
Q Consensus 78 ~Ty~el~~~~~~l---a~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 154 (419)
+++.+........ -+.|...++++|++|++......-..++.+|- ..|+.++.+..+.... ..+++.+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~~~~---~~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNEHKK---QDALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSSTTH---HHHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHH---HHHHhcCCCeec
Confidence 5666654221111 23455668999999999987656666666654 5688776665543322 245667888877
No 103
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=26.86 E-value=2.3e+02 Score=25.56 Aligned_cols=78 Identities=9% Similarity=0.037 Sum_probs=48.1
Q ss_pred eeHHHHHHHH--HHHH-HHHHh-CCCCCCCeEEEEcC-CchhHHHHHHHHHHcCCeEE-eeccCCChhHHHHHHhhcCce
Q 014742 78 LTYQEVYDAA--IRFG-SAMRS-RGVNPGDRCGIYGS-NCPEWIIAMEACNSQAITYV-PLYDTLGANAVEFIINHAEVS 151 (419)
Q Consensus 78 ~Ty~el~~~~--~~la-~~L~~-~g~~~gd~V~l~~~-n~~~~~~~~lA~~~~G~~~v-pl~~~~~~~~l~~~l~~~~~~ 151 (419)
+++.+..... -..| ..|.+ .++++|++|++... ...-.+++.+|- ..|+-.+ ..+.....++....++..+++
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 5676654321 1122 23444 58999999999998 556666666655 4687444 444444445555677788888
Q ss_pred EEEEe
Q 014742 152 IAFVQ 156 (419)
Q Consensus 152 ~vi~~ 156 (419)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 88754
No 104
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=26.01 E-value=2e+02 Score=23.00 Aligned_cols=53 Identities=9% Similarity=-0.014 Sum_probs=37.3
Q ss_pred HHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEee--ccCCChhHHHH
Q 014742 91 GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL--YDTLGANAVEF 143 (419)
Q Consensus 91 a~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl--~~~~~~~~l~~ 143 (419)
+.+|.+.|+.+...+.+...+..+.+.++-=|++.|...+.+ -+..+..+.+.
T Consensus 89 ~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~~aVl~Wl~~l~~~~~RR 143 (161)
T 1oft_A 89 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQ 143 (161)
T ss_dssp HHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHH
T ss_pred HHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCCccEEEECCCcCChHHHHH
Confidence 667888888887777777778888888888888888754433 34555544433
No 105
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=25.96 E-value=1.1e+02 Score=28.17 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=40.2
Q ss_pred CCCCCCeEEEEcCCchh------HHHHHH-HHHHcCCeEEeeccC------------CChhHHHHHHhhcCceEEEEeCC
Q 014742 98 GVNPGDRCGIYGSNCPE------WIIAME-ACNSQAITYVPLYDT------------LGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 98 g~~~gd~V~l~~~n~~~------~~~~~l-A~~~~G~~~vpl~~~------------~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
-+++||+|++++|.+.- -+-... -+-..|.-++.-..- ...++|..++..-+++.|++...
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 57899999999998742 222222 233467777643221 12356777888888999999864
No 106
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=25.68 E-value=2.4e+02 Score=25.11 Aligned_cols=63 Identities=10% Similarity=-0.045 Sum_probs=40.7
Q ss_pred HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 93 AMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 93 ~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
.+...++++|++|++....+.-.+++.+|-..-...++.++.+ . +-..++++.++..++...+
T Consensus 152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~--~-~k~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDIS--S-EKLALAKSFGAMQTFNSSE 214 (346)
T ss_dssp HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC--H-HHHHHHHHTTCSEEEETTT
T ss_pred HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEech--H-HHHHHHHHcCCeEEEeCCC
Confidence 3455688999999999886666666655554433344555442 2 3345667888888776554
No 107
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=25.56 E-value=3.7e+02 Score=24.16 Aligned_cols=56 Identities=2% Similarity=-0.041 Sum_probs=37.4
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhc---CceEEEEeCC
Q 014742 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHA---EVSIAFVQEN 158 (419)
Q Consensus 99 ~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~---~~~~vi~~~~ 158 (419)
.++||.|.+..+....+ ..++...|+.+++++. .+.+.+...++.. ++++|++..-
T Consensus 124 ~~~gd~V~~~~p~~~~~---~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~ 182 (398)
T 3a2b_A 124 MGRNDYILLDERDHASI---IDGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGI 182 (398)
T ss_dssp SCTTCEEEEETTCCHHH---HHHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESB
T ss_pred hCCCCEEEECCccCHHH---HHHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCC
Confidence 46788887776655444 3445667887777754 4677788777765 5677776653
No 108
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=25.48 E-value=1.2e+02 Score=27.48 Aligned_cols=61 Identities=7% Similarity=0.016 Sum_probs=40.0
Q ss_pred CCCCCCeEEEEcCCchhH------HHHHHH-HHHcCCeEEeecc------------CCChhHHHHHHhhcCceEEEEeCC
Q 014742 98 GVNPGDRCGIYGSNCPEW------IIAMEA-CNSQAITYVPLYD------------TLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 98 g~~~gd~V~l~~~n~~~~------~~~~lA-~~~~G~~~vpl~~------------~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
-+++||+|++++|.+.-- +-.... +-..|.-++.-.. ....+++..++..-+++.|++...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 478999999999987522 222222 2346777764321 112356778888888999999864
No 109
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=25.25 E-value=2.8e+02 Score=24.99 Aligned_cols=55 Identities=4% Similarity=-0.026 Sum_probs=35.3
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccC-----CChhHHHHHHhhcCceEEEEe
Q 014742 98 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-----LGANAVEFIINHAEVSIAFVQ 156 (419)
Q Consensus 98 g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~-----~~~~~l~~~l~~~~~~~vi~~ 156 (419)
++++||.|.+..+...... .++...|+.++.++.+ .+.+.+...++. ++++|++.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 135 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTY---YPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV 135 (390)
T ss_dssp SCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE
Confidence 5788998888776654443 3555678766655432 356677777654 56666664
No 110
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=25.14 E-value=1e+02 Score=26.65 Aligned_cols=57 Identities=7% Similarity=-0.050 Sum_probs=43.9
Q ss_pred HHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcC
Q 014742 48 FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110 (419)
Q Consensus 48 ~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~ 110 (419)
++....+..|+...+++. |....++-..++.++.+.+.+.++.|.+.|+ |.|.+.|.
T Consensus 15 v~~~l~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d~iviaCN 71 (255)
T 2jfz_A 15 VLKSLLKARLFDEIIYYG---DSARVPYGTKDPTTIKQFGLEALDFFKPHEI---ELLIVACN 71 (255)
T ss_dssp HHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHGGGCC---SCEEECCH
T ss_pred HHHHHHHHCCCCCEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---CEEEEeCc
Confidence 456666778999999877 6666666667999999999999999998765 45555554
No 111
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=24.68 E-value=1.7e+02 Score=26.50 Aligned_cols=56 Identities=11% Similarity=0.008 Sum_probs=38.6
Q ss_pred CCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 102 gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
.+.|.-. ..+=--..+.++|...|.-++.+-|...+..-...++..++.+++++..
T Consensus 76 ~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~ 131 (346)
T 3l6b_A 76 PKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS 131 (346)
T ss_dssp CSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3443333 3344445566788899987666556556666788889999999999865
No 112
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=24.14 E-value=2.8e+02 Score=25.10 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=28.0
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccC----CChhHHHHHHhhcCceEEEEeC
Q 014742 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT----LGANAVEFIINHAEVSIAFVQE 157 (419)
Q Consensus 99 ~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~~~~~vi~~~ 157 (419)
+++||.|.+..+...... ..-++...|+.++.++.+ .+.+.+...++..++++|+...
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 144 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH 144 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc
Confidence 456676666654332211 222344556544443322 2455666666544555555553
No 113
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=24.11 E-value=2.5e+02 Score=25.48 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=10.8
Q ss_pred CeEEeechhHHHHhhh
Q 014742 236 KGVVLTNQAIVAEVLS 251 (419)
Q Consensus 236 K~V~~sh~~l~~~~~~ 251 (419)
-|+++....++..+..
T Consensus 238 ~G~~~~~~~~~~~~~~ 253 (420)
T 1t3i_A 238 IGFLYGKEEILEAMPP 253 (420)
T ss_dssp CEEEEECHHHHHHSCC
T ss_pred eEEEEEchHHHhhcCc
Confidence 5788887777665543
No 114
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=23.80 E-value=2.7e+02 Score=30.47 Aligned_cols=82 Identities=5% Similarity=-0.102 Sum_probs=64.3
Q ss_pred EeechhHHHHhhhhhhhhhhcCccCCCCcEEEEecChHHHHHHHHHHHHHhcCceEEEeCC--CHHHHHHHhhhhcCeEE
Q 014742 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMF 316 (419)
Q Consensus 239 ~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~l~~l~~G~~ivl~~~--~~~~~~~~i~~~~~t~l 316 (419)
.+|++.+...+..+...+... +.++++++...++-+.. ....+++++..|+..+..+. ..+.+...++.-++.++
T Consensus 489 ~lTY~eL~~~a~~lA~~L~~~--Gv~~g~~V~i~~~~s~~-~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~v 565 (1304)
T 2vsq_A 489 TLSYRELDEEANRIARRLQKH--GAGKGSVVALYTKRSLE-LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACL 565 (1304)
T ss_dssp EEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEE
T ss_pred eEcHHHHHHHHHHHHHHHHhc--CcCCcCEEEEEeCCCHH-HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEE
Confidence 689999999999988877443 67889999888776532 23347889999999888865 77888888999999998
Q ss_pred EecchHH
Q 014742 317 SGVPRVY 323 (419)
Q Consensus 317 ~~~P~~~ 323 (419)
.+.+...
T Consensus 566 l~~~~~~ 572 (1304)
T 2vsq_A 566 LTHQEMK 572 (1304)
T ss_dssp EECSTTC
T ss_pred EECcchh
Confidence 8876543
No 115
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=23.77 E-value=1.5e+02 Score=25.79 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcC
Q 014742 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110 (419)
Q Consensus 47 ~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~ 110 (419)
.++....+..|+...+++. |...-++-..++.++.+++.+.++.|.+.|. |.|.+.|.
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d~iviaCN 74 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLG---DTARCPYGPRSREEVRQFTWEMTEHLLDLNI---KMLVIACN 74 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC---SEEEECCH
T ss_pred HHHHHHHHHCCCCCEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---CEEEEeCc
Confidence 3557777789999888876 6655555567899999999999999988764 45555444
No 116
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=23.67 E-value=1.6e+02 Score=19.96 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=33.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCe
Q 014742 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128 (419)
Q Consensus 76 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 128 (419)
..+.+.++.+. +.+.+..+++.|.++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 45777776543 34446678899999999988887777777888864
No 117
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=23.27 E-value=1.7e+02 Score=26.40 Aligned_cols=60 Identities=10% Similarity=-0.032 Sum_probs=40.3
Q ss_pred HHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCC-eEEeeccCCChhHHHHHHhhcCceEEEEe
Q 014742 93 AMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-TYVPLYDTLGANAVEFIINHAEVSIAFVQ 156 (419)
Q Consensus 93 ~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~-~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 156 (419)
.+...++++|++|+++.....-.+++.+| ...|+ .++.++.+ . +-..++++.+++.++..
T Consensus 158 al~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~--~-~~~~~~~~lGa~~vi~~ 218 (352)
T 3fpc_A 158 GAELANIKLGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGSR--K-HCCDIALEYGATDIINY 218 (352)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECCC--H-HHHHHHHHHTCCEEECG
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCC--H-HHHHHHHHhCCceEEcC
Confidence 35667899999999998765666666655 45787 56666542 3 33356677788777654
No 118
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=23.19 E-value=2e+02 Score=26.24 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=38.9
Q ss_pred HHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEe
Q 014742 92 SAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 156 (419)
Q Consensus 92 ~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 156 (419)
+.|...++++|++|++......-..++.+|- ..|+-++.+..+ .+.+. .+++.++..++..
T Consensus 185 ~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~Vi~~~~~--~~~~~-~a~~lGa~~vi~~ 245 (369)
T 1uuf_A 185 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVAFTTS--EAKRE-AAKALGADEVVNS 245 (369)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESS--GGGHH-HHHHHTCSEEEET
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCC--HHHHH-HHHHcCCcEEecc
Confidence 3455568999999999988666666666654 468775555543 33333 3445677766543
No 119
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=22.64 E-value=2.3e+02 Score=25.31 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=7.8
Q ss_pred CeEEeechhHHHH
Q 014742 236 KGVVLTNQAIVAE 248 (419)
Q Consensus 236 K~V~~sh~~l~~~ 248 (419)
-|+++....++..
T Consensus 228 ~G~~~~~~~~~~~ 240 (390)
T 1elu_A 228 VGGLYIHGDCLGE 240 (390)
T ss_dssp CEEEEECTTTGGG
T ss_pred eEEEEECHHhHhh
Confidence 4777777655433
No 120
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=22.55 E-value=1.5e+02 Score=26.43 Aligned_cols=32 Identities=9% Similarity=-0.030 Sum_probs=14.5
Q ss_pred CCCeEEEEcCCchhHHHHHHHHHHcCCeEEee
Q 014742 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132 (419)
Q Consensus 101 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl 132 (419)
+||.|.+..+..+.+......+...|+.++.+
T Consensus 87 ~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v 118 (382)
T 4hvk_A 87 KGKHILVSAVEHMSVINPAKFLQKQGFEVEYI 118 (382)
T ss_dssp GCCEEEEETTCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEECCCCcHHHHHHHHHHHhcCCEEEEe
Confidence 45555555444444443333333445444433
No 121
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=22.49 E-value=3.7e+02 Score=24.77 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=9.5
Q ss_pred CCCeEEeechhHHH
Q 014742 234 EPKGVVLTNQAIVA 247 (419)
Q Consensus 234 ~PK~V~~sh~~l~~ 247 (419)
.+=|+++.....+.
T Consensus 235 ~~~G~vv~~~~~~~ 248 (414)
T 3ndn_A 235 VLGGAILGDREYID 248 (414)
T ss_dssp CCCEEEEECHHHHT
T ss_pred ceEEEEEECHHHHH
Confidence 45678888776654
No 122
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=22.37 E-value=1.7e+02 Score=27.56 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhC--CCCCCCeEEEEcCCc-hhHHHH-HHHHHHcCCeEEee
Q 014742 83 VYDAAIRFGSAMRSR--GVNPGDRCGIYGSNC-PEWIIA-MEACNSQAITYVPL 132 (419)
Q Consensus 83 l~~~~~~la~~L~~~--g~~~gd~V~l~~~n~-~~~~~~-~lA~~~~G~~~vpl 132 (419)
+..+..++|..+.+. ++++|+.|.|..+-. .+++-+ .-++..+|+-++.+
T Consensus 7 ~~~~l~k~A~~lV~~~~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 60 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRV 60 (418)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred hHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 456777788887764 789999999999844 444444 34888999977753
No 123
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=22.18 E-value=3.3e+02 Score=24.43 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeecc----CCChhHHHHHHhhcCceEEEEe
Q 014742 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD----TLGANAVEFIINHAEVSIAFVQ 156 (419)
Q Consensus 99 ~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~----~~~~~~l~~~l~~~~~~~vi~~ 156 (419)
+++||.|.+..+.-..+. ..-++...|+.++.++. ..+.+++...++..++++|++.
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 150 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLT 150 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEE
Confidence 357787777766555432 11244556765554432 2456667776665455666654
No 124
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=21.90 E-value=1.7e+02 Score=26.83 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=37.8
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeC
Q 014742 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (419)
Q Consensus 99 ~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (419)
.++||.|.+-.+.. ....-++...|+.+++++. ...+.+...++..++++|+++.
T Consensus 140 ~~~gd~Vl~~~~~~---~~~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~ 194 (409)
T 3kki_A 140 CQPNTNVYIDFFAH---MSLWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDS 194 (409)
T ss_dssp CCTTCEEEEETTSC---HHHHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEES
T ss_pred cCCCCEEEECCCcC---HHHHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECC
Confidence 46788887755543 3344566677888877754 4677888888776677888775
No 125
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=21.74 E-value=3e+02 Score=24.64 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeecc--C--CChhHHHHHHhh-cCceEEEEeC
Q 014742 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD--T--LGANAVEFIINH-AEVSIAFVQE 157 (419)
Q Consensus 99 ~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~--~--~~~~~l~~~l~~-~~~~~vi~~~ 157 (419)
+++||.|.+..+...... ..-.+...|+.++.++. + .+.+.+...++. -++++|++..
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~ 142 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCH 142 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEec
Confidence 467888887766544332 11222345665554433 2 467778777764 3567776654
No 126
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=21.70 E-value=2.5e+02 Score=25.27 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=40.5
Q ss_pred HHHhCCCC-CCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeC
Q 014742 93 AMRSRGVN-PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (419)
Q Consensus 93 ~L~~~g~~-~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (419)
.|...+++ +|++|++......-..++.+|-. .|+.++.+..+ .+.+....++.+++.++...
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~vi~~~ 233 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDYVIGS 233 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCEEETT
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCceeeccc
Confidence 35566888 99999999876666666666554 58766655543 33444444477777666543
No 127
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=21.54 E-value=2.8e+02 Score=24.88 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=10.5
Q ss_pred CeEEeechhHHHHhh
Q 014742 236 KGVVLTNQAIVAEVL 250 (419)
Q Consensus 236 K~V~~sh~~l~~~~~ 250 (419)
-|+++....++..+.
T Consensus 233 ~G~~~~~~~~~~~~~ 247 (406)
T 1kmj_A 233 IGILYVKEALLQEMP 247 (406)
T ss_dssp CEEEEECHHHHHHCC
T ss_pred cEEEEEeHHHHhhcC
Confidence 478888877766554
No 128
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=21.48 E-value=2.3e+02 Score=26.47 Aligned_cols=49 Identities=4% Similarity=0.007 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHh--CCCCCCCeEEEEcCCc-hhHHHH-HHHHHHcCCeEEee
Q 014742 84 YDAAIRFGSAMRS--RGVNPGDRCGIYGSNC-PEWIIA-MEACNSQAITYVPL 132 (419)
Q Consensus 84 ~~~~~~la~~L~~--~g~~~gd~V~l~~~n~-~~~~~~-~lA~~~~G~~~vpl 132 (419)
..+.+++|..+.+ .++++|+.|.|..+.. .+++-. .-++..+|+-++.+
T Consensus 5 ~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 57 (408)
T 2ayi_A 5 KRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV 57 (408)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 4566777777776 4789999999999954 444444 34888999987754
No 129
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=21.37 E-value=4.5e+02 Score=24.80 Aligned_cols=70 Identities=9% Similarity=0.030 Sum_probs=50.1
Q ss_pred HHHHHHHhCC-CCCCCeEEEEcCCchhHHHHHHHHHH----cC--CeEEeeccCCC-h------hHHHHHHhhcCceEEE
Q 014742 89 RFGSAMRSRG-VNPGDRCGIYGSNCPEWIIAMEACNS----QA--ITYVPLYDTLG-A------NAVEFIINHAEVSIAF 154 (419)
Q Consensus 89 ~la~~L~~~g-~~~gd~V~l~~~n~~~~~~~~lA~~~----~G--~~~vpl~~~~~-~------~~l~~~l~~~~~~~vi 154 (419)
++.+.+.+.+ +.++++|++.+..+.+..+++..+.. .| ..++-++..+. . +.+..+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4455666655 57899999999999999988777765 35 45667777665 2 2356667777888777
Q ss_pred EeCC
Q 014742 155 VQEN 158 (419)
Q Consensus 155 ~~~~ 158 (419)
.+-+
T Consensus 84 ~~~~ 87 (464)
T 3a2k_A 84 AQID 87 (464)
T ss_dssp EECC
T ss_pred EEec
Confidence 7654
No 130
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=21.33 E-value=3.6e+02 Score=23.85 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=39.1
Q ss_pred HhCCCCCCCeEEEEcCCc-hhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEe
Q 014742 95 RSRGVNPGDRCGIYGSNC-PEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 156 (419)
Q Consensus 95 ~~~g~~~gd~V~l~~~n~-~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 156 (419)
...++++|++|.+....+ .-..++.+ +...|+.++.+.. +.+.+..+.+..++..++..
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~-a~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQI-ARLKGCRVVGIAG--GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHH-HHHTTCEEEEEES--SHHHHHHHHHTTCCSEEEET
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHH-HHHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEEC
Confidence 446899999999999854 55544444 4567887666654 34555555477777766643
No 131
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=21.21 E-value=1.1e+02 Score=27.35 Aligned_cols=89 Identities=7% Similarity=0.012 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeecc--CCChhH---HHHHHhhcCceE
Q 014742 80 YQEVYDAAIRFGSAMRSR--GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD--TLGANA---VEFIINHAEVSI 152 (419)
Q Consensus 80 y~el~~~~~~la~~L~~~--g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~--~~~~~~---l~~~l~~~~~~~ 152 (419)
+..+..+.+.+-..+++. .+....+..+...+...|+.-.+++-..+. ..+.+ .-++++ +...+++.+.++
T Consensus 165 a~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~~~--~~i~~~~ePs~~~l~~l~~~ik~~~v~~ 242 (307)
T 3ujp_A 165 AAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYM--WPINAEQQFTPKQVQTVIEEVKTNNVPT 242 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEEEE--ESSCCSSCCCHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEEEe--eccCCCCCCCHHHHHHHHHHHHhcCCcE
Confidence 345555555555555542 344355666777778888877776664422 13333 334554 555667789999
Q ss_pred EEEeCCChhhHhhcCccC
Q 014742 153 AFVQENKIPSILSCLPRC 170 (419)
Q Consensus 153 vi~~~~~~~~~~~~~~~~ 170 (419)
||++........+.+.+.
T Consensus 243 If~e~~~~~k~~~~ia~e 260 (307)
T 3ujp_A 243 IFCESTVSDKGQKQVAQA 260 (307)
T ss_dssp EEEETTSCSHHHHHTTTT
T ss_pred EEEeCCCChHHHHHHHHH
Confidence 999988777766666544
No 132
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=21.15 E-value=1.7e+02 Score=25.50 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCCCceeeeeccCCCCCceeEeeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcC
Q 014742 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGS 110 (419)
Q Consensus 47 ~~l~~~a~~~pd~~ai~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~l~~~ 110 (419)
.++....+..|+...+++- |...-++-..+..++.+++.+.++.|.+ .|. |.|.+.|.
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~g~---d~iViACN 75 (272)
T 1zuw_A 17 TVAKEIMRQLPKENIIYVG---DTKRCPYGPRPEEEVLQYTWELTNYLLENHHI---KMLVIACN 75 (272)
T ss_dssp HHHHHHHHHSTTCCEEEEE---CGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCC---SEEEECCH
T ss_pred HHHHHHHHhCCCCcEEEec---cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCC---CEEEEeCc
Confidence 4577777889999888776 6555555568899999999999999998 775 45555444
No 133
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=21.12 E-value=2.5e+02 Score=25.25 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=45.5
Q ss_pred eeHHHHHHHHHHHH---HHHHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCC-eEEeeccCCChhHHHHHHhhcCceEE
Q 014742 78 LTYQEVYDAAIRFG---SAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-TYVPLYDTLGANAVEFIINHAEVSIA 153 (419)
Q Consensus 78 ~Ty~el~~~~~~la---~~L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~-~~vpl~~~~~~~~l~~~l~~~~~~~v 153 (419)
+++.+..- ..-++ +.|...++++|++|++......-..++.+|- ..|+ .++.++.. .+. ...+++.++..+
T Consensus 146 l~~~~aa~-~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~-~~~a~~lGa~~v 220 (356)
T 1pl8_A 146 VTFEEGAL-IEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDLS--ATR-LSKAKEIGADLV 220 (356)
T ss_dssp SCHHHHHH-HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCHHHHHh-hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HHH-HHHHHHhCCCEE
Confidence 56666432 22222 2344558999999999997666666666655 4687 66666542 333 345567787766
Q ss_pred EEeC
Q 014742 154 FVQE 157 (419)
Q Consensus 154 i~~~ 157 (419)
+...
T Consensus 221 i~~~ 224 (356)
T 1pl8_A 221 LQIS 224 (356)
T ss_dssp EECS
T ss_pred EcCc
Confidence 6543
No 134
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=20.93 E-value=3.5e+02 Score=23.98 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=36.5
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccC----CChhHHHHHHhhcCceEEEEeC
Q 014742 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT----LGANAVEFIINHAEVSIAFVQE 157 (419)
Q Consensus 99 ~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~~~~~vi~~~ 157 (419)
+++||.|.+.-+.... ....-.+...|+.++.++.+ .+.+.+...++..++++|+...
T Consensus 74 ~~~gd~vi~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 135 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFG-DRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTH 135 (384)
T ss_dssp CCTTCEEEEECSSHHH-HHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEES
T ss_pred cCCCCEEEEecCCcch-HHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeC
Confidence 5789988877653322 11222334667766655433 4678888888876778877764
No 135
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=20.84 E-value=2.9e+02 Score=24.81 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=32.0
Q ss_pred HHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccC-----CChhHHHHHHhhcCceEEE
Q 014742 94 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-----LGANAVEFIINHAEVSIAF 154 (419)
Q Consensus 94 L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~-----~~~~~l~~~l~~~~~~~vi 154 (419)
++..++++||.|.+..+....+. .++...|+.++.++.+ .+.+.+...++. ++++|+
T Consensus 70 l~~l~~~~gd~Vi~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~ 131 (388)
T 1b9h_A 70 LQVMGVGPGTEVIVPAFTFISSS---QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP-RTKVIM 131 (388)
T ss_dssp HHHTTCCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEEC
T ss_pred HHHcCCCCcCEEEECCCccHHHH---HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-CceEEE
Confidence 33345677888777766554443 3456677766555432 345666665542 455555
No 136
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=20.75 E-value=4.3e+02 Score=23.21 Aligned_cols=64 Identities=6% Similarity=-0.042 Sum_probs=42.0
Q ss_pred HHhCCC-CCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeeccCCChhHHHHHHhhcCceEEEEeCC
Q 014742 94 MRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (419)
Q Consensus 94 L~~~g~-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (419)
+.+.|. ++|+.|.-.. .+=--..+.++|...|.-++.+-|......-...++..++.+++++..
T Consensus 53 a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 344454 5666555443 344445556677899986665555445556677889999999999864
No 137
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=20.63 E-value=3.8e+02 Score=24.48 Aligned_cols=19 Identities=5% Similarity=0.169 Sum_probs=12.0
Q ss_pred CCCCC-eEEeechhHHH-Hhh
Q 014742 232 TGEPK-GVVLTNQAIVA-EVL 250 (419)
Q Consensus 232 TG~PK-~V~~sh~~l~~-~~~ 250 (419)
.|.+- |+++....++. .+.
T Consensus 214 ~g~ri~G~~~~~~~~~~~~l~ 234 (404)
T 1e5e_A 214 HTDVVAGLICGKADLLQQIRM 234 (404)
T ss_dssp SSCCCCEEEEECHHHHHHHHH
T ss_pred CCCCeEEEEEECHHHHHHHHH
Confidence 44454 88888877665 443
No 138
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=20.53 E-value=4.6e+02 Score=23.41 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeecc--C-----CChhHHHHHHhhcCceEEEEe
Q 014742 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD--T-----LGANAVEFIINHAEVSIAFVQ 156 (419)
Q Consensus 100 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~~--~-----~~~~~l~~~l~~~~~~~vi~~ 156 (419)
++||.|.+..+.-..+. .++...|+.++.++. . ...+.+...++..++++|++.
T Consensus 109 ~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~ 169 (390)
T 1d2f_A 109 ETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLC 169 (390)
T ss_dssp CTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEe
Confidence 56777777665444332 334556665544432 1 456667766665456666644
No 139
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=20.36 E-value=2.8e+02 Score=24.95 Aligned_cols=79 Identities=9% Similarity=0.013 Sum_probs=47.1
Q ss_pred eeHHHHHHHH--HHHH-HHHHh-CCCCCC-CeEEEEcC-CchhHHHHHHHHHHcCCeEEeeccCCCh-hHHHHHHhhcCc
Q 014742 78 LTYQEVYDAA--IRFG-SAMRS-RGVNPG-DRCGIYGS-NCPEWIIAMEACNSQAITYVPLYDTLGA-NAVEFIINHAEV 150 (419)
Q Consensus 78 ~Ty~el~~~~--~~la-~~L~~-~g~~~g-d~V~l~~~-n~~~~~~~~lA~~~~G~~~vpl~~~~~~-~~l~~~l~~~~~ 150 (419)
+++.+..-.. -..| ..|.+ .++++| ++|++... ...-.+++.+|- ..|+-++.+...... ++....+++.++
T Consensus 139 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (364)
T 1gu7_A 139 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELGA 217 (364)
T ss_dssp CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHTC
T ss_pred CCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcCC
Confidence 6776644321 1122 23444 389999 99999988 566666666655 468766555433222 334455577888
Q ss_pred eEEEEeC
Q 014742 151 SIAFVQE 157 (419)
Q Consensus 151 ~~vi~~~ 157 (419)
+.++...
T Consensus 218 ~~vi~~~ 224 (364)
T 1gu7_A 218 TQVITED 224 (364)
T ss_dssp SEEEEHH
T ss_pred eEEEecC
Confidence 8777543
No 140
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=20.25 E-value=1.5e+02 Score=26.53 Aligned_cols=18 Identities=17% Similarity=-0.116 Sum_probs=7.7
Q ss_pred cEeEEEEccCCCCHHHHHHH
Q 014742 384 RLQAMLSGAAPLPIHVEEFL 403 (419)
Q Consensus 384 ~lr~v~~~G~~l~~~~~~~~ 403 (419)
.+|..+ +...+++.++.+
T Consensus 345 ~iRi~~--~~~~~~~~i~~~ 362 (382)
T 4eb5_A 345 TLLLTL--GRYNTDEDVDRL 362 (382)
T ss_dssp EEEEEC--CTTCCHHHHHHH
T ss_pred eEEEEC--CCCCCHHHHHHH
Confidence 455443 333444444433
No 141
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=20.25 E-value=1.9e+02 Score=26.58 Aligned_cols=35 Identities=14% Similarity=-0.013 Sum_probs=18.1
Q ss_pred hCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeec
Q 014742 96 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLY 133 (419)
Q Consensus 96 ~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~ 133 (419)
..++++||.|.+..+....+. .++...|+.++.++
T Consensus 76 ~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~ 110 (418)
T 2c81_A 76 ALGIGEGDEVIVPSLTWIATA---TAVLNVNALPVFVD 110 (418)
T ss_dssp HTTCCTTCEEEEESSSCTHHH---HHHHHTTCEEEEEC
T ss_pred HcCCCCcCEEEECCCccHhHH---HHHHHcCCEEEEEe
Confidence 334566676666655444433 33445566555443
No 142
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=20.21 E-value=3.6e+02 Score=23.95 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=14.5
Q ss_pred CCCCCeEEeechhHHHHhhhh
Q 014742 232 TGEPKGVVLTNQAIVAEVLSV 252 (419)
Q Consensus 232 TG~PK~V~~sh~~l~~~~~~~ 252 (419)
+|.+-|.++....++..+...
T Consensus 227 ~G~r~G~~~~~~~~~~~~~~~ 247 (370)
T 2z61_A 227 TGWRIGYVISNDEIIEAILKL 247 (370)
T ss_dssp GGGCCEEEECCHHHHHHHHHH
T ss_pred ccceEEEEEECHHHHHHHHHH
Confidence 455678888888777666543
No 143
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=20.19 E-value=2.6e+02 Score=25.32 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=39.2
Q ss_pred HHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCC-eEEeeccCCChhHHHHHHhhcCceEEEEe
Q 014742 94 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-TYVPLYDTLGANAVEFIINHAEVSIAFVQ 156 (419)
Q Consensus 94 L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~-~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 156 (419)
+...++++|++|++......-.+++.+|- ..|+ .++.++.. .+ -..++++.++..++..
T Consensus 175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~-~~~~a~~lGa~~vi~~ 234 (370)
T 4ej6_A 175 VDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTRQ--AT-KRRLAEEVGATATVDP 234 (370)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--HH-HHHHHHHHTCSEEECT
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HH-HHHHHHHcCCCEEECC
Confidence 45568999999999988555666555554 5787 66666543 33 3446667777776643
No 144
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=20.14 E-value=3.5e+02 Score=24.69 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=5.6
Q ss_pred CCCCeEEEEcCC
Q 014742 100 NPGDRCGIYGSN 111 (419)
Q Consensus 100 ~~gd~V~l~~~n 111 (419)
++||.|.+..+.
T Consensus 93 ~~gd~vi~~~~~ 104 (412)
T 2cb1_A 93 RPGDEVVAAKGL 104 (412)
T ss_dssp CTTCEEEEETTC
T ss_pred CCCCEEEEeCCC
Confidence 445555444443
No 145
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=20.05 E-value=1.7e+02 Score=26.37 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=19.0
Q ss_pred HHhCCCCCCCeEEEEcCCchhHHHHHHHHHHcCCeEEeec
Q 014742 94 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLY 133 (419)
Q Consensus 94 L~~~g~~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~vpl~ 133 (419)
++..++++||.|.+..+...... .++...|+.++.++
T Consensus 68 l~~l~~~~gd~Vi~~~~~~~~~~---~~~~~~g~~~~~~~ 104 (373)
T 3frk_A 68 LKGYDIGFGDEVIVPSNTFIATA---LAVSYTGAKPIFVE 104 (373)
T ss_dssp HHHTTCCTTCEEEEETTSCTHHH---HHHHHHSCEEEEEC
T ss_pred HHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEe
Confidence 33445566776666655444432 33445565554443
Done!