BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014743
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 600 bits (1548), Expect = e-172, Method: Compositional matrix adjust.
Identities = 288/389 (74%), Positives = 332/389 (85%), Gaps = 1/389 (0%)
Query: 31 GLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVK 90
G++ Y+ Q I E +L++R KT N+ RLEAQRN LN +VR +K+EL+LLQEPGSYVGEV+K
Sbjct: 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIK 77
Query: 91 VMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLM 150
++ KVLVKV PEGKY+V S RV LR+DSY+LH +L +K DPLV+LM
Sbjct: 78 IVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLM 137
Query: 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTL 210
VEKVPDSTYDM+GGL +QIKEIKEVIELP+KHPELFESLGIAQPKGV+LYGPPGTGKTL
Sbjct: 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL 197
Query: 211 LARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 270
LARAVAHHTDC FIRVSG+ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS R
Sbjct: 198 LARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTR 257
Query: 271 MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEF 330
+E GSG GDSEVQRTMLELLNQLDGFE S IK++MATNR+DILD ALLRPGRIDRKIEF
Sbjct: 258 VE-GSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316
Query: 331 PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH 390
P P+ +R +IL+IHSR+MNL RGI+L+K+AEKMNG SGA++K VCTEAGM+ALRERRIH
Sbjct: 317 PPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIH 376
Query: 391 VTQEDFEMAVAKVMKKETEKNMSLRKLWK 419
VTQEDFE+AV KVM K E +S+ KL+K
Sbjct: 377 VTQEDFELAVGKVMNKNQETAISVAKLFK 405
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/309 (54%), Positives = 216/309 (69%), Gaps = 1/309 (0%)
Query: 96 KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKV 155
K ++ + K+VV RV + Y + L LP ++DP V +M VE+
Sbjct: 144 KYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEK 203
Query: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 215
PD TY +GG QI++++EV+ELP+ PE F +LGI PKG+LLYGPPGTGKTL ARAV
Sbjct: 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAV 263
Query: 216 AHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 275
A+ TD TFIRV GSELVQKY+GEG+RMVRELF MAR IIF DEID++G AR + G+
Sbjct: 264 ANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGA 323
Query: 276 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNE 335
G GD+EVQRTMLEL+ QLDGF+ IKV+ ATNR + LD ALLRPGRIDRK+EF P+
Sbjct: 324 G-GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDL 382
Query: 336 ESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQED 395
E R +I +IHS+ M++ RGI + I+ ++GAEL++VCTEAGMFA+R RR T++D
Sbjct: 383 EGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKD 442
Query: 396 FEMAVAKVM 404
F AV KV+
Sbjct: 443 FLKAVDKVI 451
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 333 bits (855), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 161/328 (49%), Positives = 231/328 (70%), Gaps = 1/328 (0%)
Query: 85 VGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVD 144
+G + +++ + +V Y V P V L + + + +L D
Sbjct: 106 IGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDAD 165
Query: 145 PLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPP 204
P+V++MK++K P +Y IGGL+ QI+EIKE +ELP+ HPEL+E +GI PKGV+LYG P
Sbjct: 166 PMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAP 225
Query: 205 GTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 264
GTGKTLLA+AVA+ T TF+R+ GSEL+QKY+G+G R+ R++F +A E+APSI+F+DEID
Sbjct: 226 GTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEID 285
Query: 265 SIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRI 324
+IG+ R +S SG G+ E+QRTMLELLNQLDGF+ +KV+MATN+I+ LD AL+RPGRI
Sbjct: 286 AIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRI 344
Query: 325 DRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL 384
DRKI F NP+ ++ IL IH+ +MNL ++L+ + + SGA+++A+CTEAG+ AL
Sbjct: 345 DRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLAL 404
Query: 385 RERRIHVTQEDFEMAVAKVMKKETEKNM 412
RERR+ VT EDF+ A +VMK + E+N+
Sbjct: 405 RERRMQVTAEDFKQAKERVMKNKVEENL 432
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 322 bits (825), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 152/255 (59%), Positives = 208/255 (81%), Gaps = 1/255 (0%)
Query: 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKT 209
M+V++ P+ Y+ IGGL++Q++EI+EV+ELP+KHPELFE +GI PKG+LLYGPPGTGKT
Sbjct: 6 MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65
Query: 210 LLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 269
LLA+AVA T+ TFIRV GSELV+K+IGEG+ +V+++F +A+E APSIIF+DEID+I +
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 125
Query: 270 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIE 329
R ++ +G GD EVQRT+++LL ++DGF+A +K++ ATNR DILD A+LRPGR DR IE
Sbjct: 126 RTDALTG-GDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIE 184
Query: 330 FPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 389
P P+E+ RL+ILKIH+R+MNL ++L++IA+ G GAELKA+CTEAGM A+RE R
Sbjct: 185 VPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD 244
Query: 390 HVTQEDFEMAVAKVM 404
+VT +DF AV K+M
Sbjct: 245 YVTMDDFRKAVEKIM 259
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 312 bits (799), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 149/288 (51%), Positives = 211/288 (73%), Gaps = 1/288 (0%)
Query: 122 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPI 181
P+ V + DSY++ LPS+ D V M+V++ P TY +GGLD+QI+E+ E I LP+
Sbjct: 142 PNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPM 201
Query: 182 KHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSR 241
K + F+ +GI PKG L+YGPPGTGKTLLARA A T+ TF++++ +LVQ YIGEG++
Sbjct: 202 KRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAK 261
Query: 242 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK 301
+VR+ F +A+E AP+IIF+DE+D+IG+ R +S +GD EVQRTMLELLNQLDGF + ++
Sbjct: 262 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDS-EKSGDREVQRTMLELLNQLDGFSSDDR 320
Query: 302 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIA 361
+KVL ATNR+D+LD ALLR GR+DRKIEFP P+E+SR IL+IHSR+M I+ +++A
Sbjct: 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELA 380
Query: 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 409
+ +GA+LKAV EAGM ALR + V EDF +++V ++++
Sbjct: 381 RSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSK 428
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 310 bits (793), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 162/373 (43%), Positives = 234/373 (62%), Gaps = 9/373 (2%)
Query: 46 QVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEG 105
Q++Q+ N+ LE ++ + +++ LQ G +GEV+K + + K +VK
Sbjct: 73 QLKQRRQNIRDLEKLYDKTEN-------DIKALQSIGQLIGEVMKELSEEKYIVKASSGP 125
Query: 106 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGG 165
+Y+V RV L + + ILP + DPLV M + + T+D IGG
Sbjct: 126 RYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGG 185
Query: 166 LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 225
L +QI+E++EVIELP+K+PE+F+ +GI PKGVLLYGPPGTGKTLLA+AVA FI
Sbjct: 186 LTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245
Query: 226 VSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285
S +V KYIGE +R++RE+F A+EH P IIFMDE+D+IG R G+ + D E+QRT
Sbjct: 246 SPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGT-SADREIQRT 304
Query: 286 MLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH 345
++ELL Q+DGF+ + K++MATNR D LD ALLRPGR+DRK+E P PNE RL+I KIH
Sbjct: 305 LMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIH 364
Query: 346 SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 405
+ ++ D + + +G +GA+++ TEAG FA+R+ R H+ +D AV KV +
Sbjct: 365 TAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAE 424
Query: 406 -KETEKNMSLRKL 417
K+ E + +KL
Sbjct: 425 VKKLEGTIEYQKL 437
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 287 bits (734), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 155/355 (43%), Positives = 225/355 (63%), Gaps = 4/355 (1%)
Query: 55 NRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXX 114
+ ++ ++ L ++ +EE++ +Q +G+ ++ + +N +V YVV
Sbjct: 66 DYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILST 125
Query: 115 XXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIK 174
PS VAL S L ILP D +++M + PD TY +GGLD Q +EI+
Sbjct: 126 LDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIR 185
Query: 175 EVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234
E +ELP+ +L+E +GI P+GVLLYGPPGTGKT+L +AVA+ T FIRV+GSE V K
Sbjct: 186 EAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245
Query: 235 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD 294
Y+GEG RMVR++F +ARE+APSIIF+DE+DSI + R ++ +G+ D EVQR ++ELL Q+D
Sbjct: 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS-DREVQRILIELLTQMD 304
Query: 295 GFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNE--ESRLDILKIHSRRMNLM 352
GF+ S +KV+MATNR D LD ALLRPGR+DRKIEFP+ + E RL I + +M+L
Sbjct: 305 GFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRL-IFGTIASKMSLA 363
Query: 353 RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 407
DL + + + SGA + A+ EAG+ A+R+ R + Q D E A A +K +
Sbjct: 364 PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 418
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 167/254 (65%), Gaps = 2/254 (0%)
Query: 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 218
T+ +GG ++ I+E+KEV+E +K P F +G PKG+LL GPPGTGKTLLARAVA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 219 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 278
+ F +SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R +G G G
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG-AGLGGG 131
Query: 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR 338
E ++T+ +LL ++DGF++ I V+ ATNR DILD ALLRPGR D+KI P+ R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 339 LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 398
IL+IH+R L ++L+ IA++ G GA+L+ + EA + A RE R +T +DFE
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Query: 399 AVAKVMKKETEKNM 412
A+ +V+ K++
Sbjct: 252 AIDRVIAGPARKSL 265
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 166/254 (65%), Gaps = 2/254 (0%)
Query: 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 218
T+ +GG ++ I+E+KEV+E +K P F +G PKG+LL GPPGTG TLLARAVA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 219 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 278
+ F +SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R +G G G
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG-AGLGGG 131
Query: 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR 338
E ++T+ +LL ++DGF++ I V+ ATNR DILD ALLRPGR D+KI P+ R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 339 LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 398
IL+IH+R L ++L+ IA++ G GA+L+ + EA + A RE R +T +DFE
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Query: 399 AVAKVMKKETEKNM 412
A+ +V+ K++
Sbjct: 252 AIDRVIAGPARKSL 265
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219
YD IGG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 220 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 279
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 339
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 340 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 400 VAKVM 404
A+VM
Sbjct: 438 DAEVM 442
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219
YD IGG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 220 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 279
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 339
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 340 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 400 VAKVM 404
A+VM
Sbjct: 438 DAEVM 442
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219
YD IGG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 220 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 279
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 339
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 340 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 400 VAKVM 404
A+VM
Sbjct: 438 DAEVM 442
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 148/232 (63%), Gaps = 1/232 (0%)
Query: 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLL 211
V +VP T++ IGGL+ +E++E+++ P++HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 212 ARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 271
A+A+A+ FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI AR
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 272 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331
+ G + R + ++L ++DG + ++ ATNR DI+D A+LRPGR+D+ I P
Sbjct: 588 GNIGDGGGA-ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
Query: 332 NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFA 383
P+E+SR+ ILK + R+ + + +DL+ +A+ NG SGA+L +C A A
Sbjct: 647 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219
YD IGG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 220 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 279
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 339
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 340 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 400 VAKVM 404
A+VM
Sbjct: 438 DAEVM 442
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219
YD +GG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 220 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 279
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 339
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 340 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 400 VAKVM 404
A+VM
Sbjct: 438 DAEVM 442
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 148/232 (63%), Gaps = 1/232 (0%)
Query: 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLL 211
V +VP T++ IGGL+ +E++E+++ P++HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 212 ARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 271
A+A+A+ FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI AR
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 272 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331
+ G + R + ++L ++DG + ++ ATNR DI+D A+LRPGR+D+ I P
Sbjct: 588 GNIGDGGGA-ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
Query: 332 NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFA 383
P+E+SR+ ILK + R+ + + +DL+ +A+ NG SGA+L +C A A
Sbjct: 647 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 157/247 (63%), Gaps = 2/247 (0%)
Query: 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 217
+T+ + G D+ +E+ E++E ++ P F+ LG PKGVL+ GPPGTGKTLLA+A+A
Sbjct: 9 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 218 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 277
F +SGS+ V+ ++G G+ VR++F A++ AP IIF+DEID++G R +G G
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR-GAGLGG 126
Query: 278 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 337
G E ++T+ ++L ++DGFE + I V+ ATNR D+LD ALLRPGR DR++ P+
Sbjct: 127 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186
Query: 338 RLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFE 397
R ILK+H RR+ L ID IA G SGA+L + EA +FA R + V+ +FE
Sbjct: 187 REQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFE 246
Query: 398 MAVAKVM 404
A K+M
Sbjct: 247 KAKDKIM 253
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219
YD +GG +Q+ +IKE++ELP++HP LF+++G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 220 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 279
F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R ++ +G+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGE 319
Query: 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 339
E +R + +LL +DG + + V+ ATNR + +D AL R GR DR+++ P+ RL
Sbjct: 320 VE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 340 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399
+IL+IH++ M L +DL+++A + +G GA+L A+C+EA + A+R++ + ED E
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETI 437
Query: 400 VAKVM 404
A+VM
Sbjct: 438 DAEVM 442
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 197 bits (501), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 148/232 (63%), Gaps = 1/232 (0%)
Query: 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLL 211
V +VP T++ IGGL+ +E++E+++ P++HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65
Query: 212 ARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 271
A+A+A+ FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI AR
Sbjct: 66 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 125
Query: 272 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331
+ G + R + ++L ++DG + ++ ATNR DI+D A+LRPGR+D+ I P
Sbjct: 126 GNIGDGGGA-ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 184
Query: 332 NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFA 383
P+E+SR+ ILK + R+ + + +DL+ +A+ NG SGA+L +C A A
Sbjct: 185 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 160/246 (65%), Gaps = 2/246 (0%)
Query: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 215
P+ + + G ++ +E+ E+++ +K+PE + +LG PKGVLL GPPGTGKTLLA+AV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 216 AHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 275
A F + GS ++ ++G G+ VR+LF A++ APSIIF+DEID+IG +R G
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 276 GNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPN 334
+G+ E ++T+ +LL ++DGF + N + VL ATNR +ILD AL+RPGR DR++ P+
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 335 EESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 394
R++ILK+H + + L ++L+++A+ G +GA+L + EA + A R + V Q+
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQ 244
Query: 395 DFEMAV 400
+ AV
Sbjct: 245 HLKEAV 250
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/261 (44%), Positives = 165/261 (63%), Gaps = 2/261 (0%)
Query: 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLAR 213
+ P T+ + G ++ +E+KE++E +K+P F +G PKGVLL GPPG GKT LAR
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91
Query: 214 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 273
AVA FI SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R S
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR-GS 150
Query: 274 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 333
G G G+ E ++T+ +LL ++DGFE I V+ ATNR DILD ALLRPGR DR+I P
Sbjct: 151 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
Query: 334 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 393
+ + R IL+IH+R L +DL +A++ G GA+L+ + EA + A RE R +T
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 270
Query: 394 EDFEMAVAKVMKKETEKNMSL 414
+D E A +VM +K++ L
Sbjct: 271 KDLEEAADRVMMLPAKKSLVL 291
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/261 (44%), Positives = 165/261 (63%), Gaps = 2/261 (0%)
Query: 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLAR 213
+ P T+ + G ++ +E+KE++E +K+P F +G PKGVLL GPPG GKT LAR
Sbjct: 24 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 82
Query: 214 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 273
AVA FI SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R S
Sbjct: 83 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR-GS 141
Query: 274 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 333
G G G+ E ++T+ +LL ++DGFE I V+ ATNR DILD ALLRPGR DR+I P
Sbjct: 142 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201
Query: 334 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 393
+ + R IL+IH+R L +DL +A++ G GA+L+ + EA + A RE R +T
Sbjct: 202 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 261
Query: 394 EDFEMAVAKVMKKETEKNMSL 414
+D E A +VM +K++ L
Sbjct: 262 KDLEEAADRVMMLPAKKSLVL 282
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 158/248 (63%), Gaps = 2/248 (0%)
Query: 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLAR 213
+ P T+ + G ++ +E+KE++E +K+P F +G PKGVLL GPPG GKT LAR
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91
Query: 214 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 273
AVA FI SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R S
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR-GS 150
Query: 274 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 333
G G G+ E ++T+ +LL ++DGFE I V+ ATNR DILD ALLRPGR DR+I P
Sbjct: 151 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
Query: 334 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 393
+ + R IL+IH+R L +DL +A++ G GA+L+ + EA + A RE R +T
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 270
Query: 394 EDFEMAVA 401
+D E A +
Sbjct: 271 KDLEEAAS 278
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 158/248 (63%), Gaps = 2/248 (0%)
Query: 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLAR 213
+ P T+ + G ++ +E+KE++E +K+P F +G PKGVLL GPPG GKT LAR
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67
Query: 214 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 273
AVA FI SGS+ V+ ++G G+ VR+LF A+ HAP I+F+DEID++G R S
Sbjct: 68 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR-GS 126
Query: 274 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 333
G G G+ E ++T+ +LL ++DGFE I V+ ATNR DILD ALLRPGR DR+I P
Sbjct: 127 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 186
Query: 334 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 393
+ + R IL+IH+R L +DL +A++ G GA+L+ + EA + A RE R +T
Sbjct: 187 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 246
Query: 394 EDFEMAVA 401
+D E A +
Sbjct: 247 KDLEEAAS 254
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 155/260 (59%), Gaps = 3/260 (1%)
Query: 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 218
++ + G+ + E++E ++ +K PE F LG PKG LL GPPG GKTLLA+AVA
Sbjct: 4 SFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 219 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 278
F+ ++G+E V+ G G+ VR LF AR AP I+++DEID++G R + SG
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFS 122
Query: 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR 338
++E ++T+ +LL ++DG ++ + VL +TNR DILD AL+RPGR+DR + P + R
Sbjct: 123 NTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182
Query: 339 LDILKIHSRRMNLMRGIDL--KKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDF 396
+I + H + + L + +++AE G SGA++ +C EA + A RE V +F
Sbjct: 183 REIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNF 242
Query: 397 EMAVAKVMKKETEKNMSLRK 416
E AV +V+ +K+ L K
Sbjct: 243 EYAVERVLAGTAKKSKILSK 262
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 159/273 (58%), Gaps = 20/273 (7%)
Query: 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARA 214
VP+ T+ IG L+ +E+ I P+++P+ F++LG+ P GVLL GPPG GKTLLA+A
Sbjct: 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63
Query: 215 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 274
VA+ + FI V G EL+ Y+GE R VR++F A+ AP +IF DE+D++ R +
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE 123
Query: 275 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPN 334
+G R + +LL ++DG EA ++ ++ ATNR DI+D A+LRPGR+D+ + P
Sbjct: 124 TGAS----VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPP 179
Query: 335 EESRLDILKIHSR---RMNLMRGIDLKKIAE--KMNGASGAELKAVCTEAGMFALRER-- 387
RL ILK ++ + L ++L+ IA + + +GA+L A+ EA + ALR+
Sbjct: 180 PADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239
Query: 388 ---------RIHVTQEDFEMAVAKVMKKETEKN 411
+ V+ + FE A KV ++K+
Sbjct: 240 RQKSGNEKGELKVSHKHFEEAFKKVRSSISKKD 272
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 153/279 (54%), Gaps = 24/279 (8%)
Query: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 215
P ++ I G++ IKE++ P+ P++F L PKG+LL+GPPGTGKTL+ + +
Sbjct: 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCI 137
Query: 216 AHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 275
A + TF +S S L K++GEG +MVR LF +AR P++IF+DEIDS+ S R
Sbjct: 138 ASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR----- 192
Query: 276 GNGDSEVQRTM-LELLNQLDGFEASNKIKVLM--ATNRIDILDQALLRPGRIDRKIEFPN 332
G+G+ E R + E L QLDG S++ ++L+ ATNR +D+A R R+ +++ P
Sbjct: 193 GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPL 250
Query: 333 PNEESRLDI-LKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH- 390
P +R I + + S+ + ++++I ++ + SGA++ +C EA + +R +
Sbjct: 251 PEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310
Query: 391 -----------VTQEDFEMAVAKVMKKETEKNMSLRKLW 418
+ DFE A V + K++ L + W
Sbjct: 311 IATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENW 349
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 150/247 (60%), Gaps = 13/247 (5%)
Query: 146 LVNLMKVEKVPDST---YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYG 202
L NL+ E V + T +D I G D + ++E++ LP PELF L A +G+LL+G
Sbjct: 97 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFG 155
Query: 203 PPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDE 262
PPG GKT+LA+AVA ++ TF +S + L KY+GEG ++VR LF +ARE PSIIF+D+
Sbjct: 156 PPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQ 215
Query: 263 IDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM--ATNRIDILDQALLR 320
+DS+ R E G D+ +R E L + DG +++ +VL+ ATNR LD+A+LR
Sbjct: 216 VDSLLCERRE---GEHDAS-RRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR 271
Query: 321 PGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEA 379
R +++ PNEE+R L + + ++ + + +L ++A +G SG++L A+ +A
Sbjct: 272 --RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDA 329
Query: 380 GMFALRE 386
+ +RE
Sbjct: 330 ALGPIRE 336
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 136/235 (57%), Gaps = 12/235 (5%)
Query: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARA 214
P+ + + GL+ + +KE + LPIK P LF G P +G+LL+GPPGTGK+ LA+A
Sbjct: 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKA 64
Query: 215 VAHHTD-CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 273
VA + TF +S S+LV K++GE ++V+ LF +ARE+ PSIIF+DEIDS+ +R E
Sbjct: 65 VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE- 123
Query: 274 GSGNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPN 332
N +R E L Q+ G N I VL ATN +LD A+ R R +++I P
Sbjct: 124 ---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPL 178
Query: 333 PNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386
P +R + K+H N + D +++ K +G SGA++ + +A M +R+
Sbjct: 179 PEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 136/235 (57%), Gaps = 12/235 (5%)
Query: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARA 214
P+ + + GL+ + +KE + LPIK P LF G P +G+LL+GPPGTGK+ LA+A
Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKA 186
Query: 215 VAHH-TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 273
VA + TF +S S+LV K++GE ++V+ LF +ARE+ PSIIF+DEIDS+ +R E
Sbjct: 187 VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE- 245
Query: 274 GSGNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPN 332
N +R E L Q+ G N I VL ATN +LD A+ R R +++I P
Sbjct: 246 ---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPL 300
Query: 333 PNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386
P +R + ++H N + D +++ K +G SGA++ + +A M +R+
Sbjct: 301 PEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 147/248 (59%), Gaps = 15/248 (6%)
Query: 143 VDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLY 201
+DP ++ EK P+ ++ + GL+ + +KE + LP+K P LF+ G +P G+LLY
Sbjct: 2 IDPFTAILS-EK-PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLY 57
Query: 202 GPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMD 261
GPPGTGK+ LA+AVA + TF VS S+LV K++GE ++V++LF MARE+ PSIIF+D
Sbjct: 58 GPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFID 117
Query: 262 EIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGF-EASNKIKVLMATNRIDILDQALL 319
++D++ R G G+SE R + ELL Q++G S + VL ATN LD A+
Sbjct: 118 QVDALTGTR-----GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 172
Query: 320 RPGRIDRKIEFPNPNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTE 378
R R +R+I P P+ +R + +I+ ++ D + + G SG+++ V +
Sbjct: 173 R--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 230
Query: 379 AGMFALRE 386
A M +R+
Sbjct: 231 ALMQPIRK 238
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 140/235 (59%), Gaps = 13/235 (5%)
Query: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARA 214
P+ ++ + GL+ + +KE + LP+K P LF+ G +P G+LLYGPPGTGK+ LA+A
Sbjct: 22 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLAKA 79
Query: 215 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 274
VA + TF VS S+LV K++GE ++V++LF MARE+ PSIIF+DE+D++ R
Sbjct: 80 VATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR---- 135
Query: 275 SGNGDSEVQRTM-LELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 332
G G+SE R + ELL Q++G S + VL ATN LD A+ R R +R+I P
Sbjct: 136 -GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 192
Query: 333 PNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386
P+ +R + +I+ ++ D + + G SG+++ V +A M +R+
Sbjct: 193 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 141/235 (60%), Gaps = 13/235 (5%)
Query: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARA 214
P+ ++ + GL+ + +KE + LP+K P LF+ G +P G+LLYGPPGTGK+ LA+A
Sbjct: 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLAKA 103
Query: 215 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 274
VA + TF VS S+LV K++GE ++V++LF MARE+ PSIIF+D++D++ R
Sbjct: 104 VATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR---- 159
Query: 275 SGNGDSEVQRTM-LELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 332
G G+SE R + ELL Q++G S + VL ATN LD A+ R R +R+I P
Sbjct: 160 -GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 216
Query: 333 PNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386
P+ +R + +I+ +++ D + + G SG+++ V +A M +R+
Sbjct: 217 PDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 140/235 (59%), Gaps = 13/235 (5%)
Query: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARA 214
P+ ++ + GL+ + +KE + LP+K P LF+ G +P G+LLYGPPGTGK+ LA+A
Sbjct: 31 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLAKA 88
Query: 215 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 274
VA + TF VS S+LV K++GE ++V++LF MARE+ PSIIF+D++D++ R
Sbjct: 89 VATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR---- 144
Query: 275 SGNGDSEVQRTM-LELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 332
G G+SE R + ELL Q++G S + VL ATN LD A+ R R +R+I P
Sbjct: 145 -GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 201
Query: 333 PNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386
P+ +R + +I+ ++ D + + G SG+++ V +A M +R+
Sbjct: 202 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 23/275 (8%)
Query: 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219
+ I G D + ++E++ LP PELF L A KG+LL+GPPG GKTLLARAVA
Sbjct: 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATEC 78
Query: 220 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 279
TF+ +S + L KY+G+G ++VR LF +AR PSIIF+DE+DS+ S R S
Sbjct: 79 SATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEH---- 134
Query: 280 SEVQRTMLELLNQLDGFEAS---NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEE 336
+R E L + DG + ++I VL ATNR LD+A LR R +++ P+E+
Sbjct: 135 EASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQ 192
Query: 337 SRLDIL-KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH----- 390
+R +L ++ ++ + + L+++A+ +G SG++L A+ +A + +RE +
Sbjct: 193 TRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCL 252
Query: 391 -------VTQEDFEMAVAKVMKKETEKNMSLRKLW 418
+T++DF ++ ++ + ++++ + W
Sbjct: 253 DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 287
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 72/76 (94%)
Query: 333 PNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVT 392
PNEE+RLDILKIHSR+MNL RGI+L+KIAE M GASGAE+K VCTEAGM+ALRERR+HVT
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 393 QEDFEMAVAKVMKKET 408
QEDFEMAVAKVM+K++
Sbjct: 71 QEDFEMAVAKVMQKDS 86
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 68/78 (87%)
Query: 331 PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH 390
P PNEE+RLDILKIHSR+ NL RGI+L+KIAE GASGAE+K VCTEAG +ALRERR+H
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 391 VTQEDFEMAVAKVMKKET 408
VTQEDFE AVAKV +K++
Sbjct: 61 VTQEDFEXAVAKVXQKDS 78
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 71.6 bits (174), Expect = 8e-13, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 51/72 (70%)
Query: 333 PNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVT 392
P+ E R +I +IHS+ M++ RGI + I+ ++GAEL++VCTEAGMFA+R RR T
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 67
Query: 393 QEDFEMAVAKVM 404
++DF AV KV+
Sbjct: 68 EKDFLKAVDKVI 79
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 336 ESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQED 395
E R +I +IHS+ ++ RGI + I+ ++GAEL++VCTEAG FA+R RR T++D
Sbjct: 4 EGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATEKD 63
Query: 396 FEMAVAKVM 404
F AV KV+
Sbjct: 64 FLKAVDKVI 72
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 341 ILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400
I + +MNL +DL+ + + SGA++ ++C E+GM A+RE R V +DFE A
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAY 68
Query: 401 AKVMKKETEKN 411
V+KK+ +++
Sbjct: 69 KTVIKKDEQEH 79
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVRELFVMARE 252
PK +L+ GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 253 HAPS-----IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 290
+ I+F+DEID I SG+ VQR +L L+
Sbjct: 110 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 173 IKEVIELPIKHPELFESLGIAQPKG----VLLYGP-PGTGKTLLARAVAHHTDCTFIRVS 227
I E I LP E F+S+ KG ++L+ P PGTGKT +A+A+ H + + V+
Sbjct: 25 IDECI-LPAFDKETFKSI---TSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80
Query: 228 GSELVQKYI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 286
GS+ ++ G + R+ +I +DE D G A E QR +
Sbjct: 81 GSDCKIDFVRGPLTNFASAASFDGRQ---KVIVIDEFDRSGLA-----------ESQRHL 126
Query: 287 LELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHS 346
+ S+ +++ N ID + + L R+ I F P +E +++++K
Sbjct: 127 RSFMEAY-----SSNCSIIITANNIDGIIKPLQSRCRV---ITFGQPTDEDKIEMMKQMI 178
Query: 347 RRMN 350
RR+
Sbjct: 179 RRLT 182
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGEG-----SRMVRELFVMAR 251
+LL GP G+GKTL+A+ +A H D + L + Y+GE +R+++ +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 252 EHAPSIIFMDEIDSIGS-------ARMESGSGNGDSEVQRTMLELL 290
+ I+F+DEID I R SG G VQ+ +L+++
Sbjct: 135 KAQKGIVFIDEIDKISRLSENRSITRDVSGEG-----VQQALLKIV 175
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP-- 255
++L+GPPGTGKT LA +A + + R+S + G + +RE AR++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 256 --SIIFMDEIDSIGSARMES 273
+I+F+DE+ ++ ++
Sbjct: 106 RRTILFVDEVHRFNKSQQDA 125
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGEG-----SRMVRELFVMAR 251
+LL GP G+GKTLLA +A D F + L + Y+GE +++++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 252 EHAPSIIFMDEIDSIGS-------ARMESGSGNGDSEVQRTMLELL 290
+ I+++D+ID I R SG G VQ+ +L+L+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEG-----VQQALLKLI 154
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGEG-----SRMVRELFVMAR 251
+LL GP G+GKTLLA +A D F + L + Y+GE +++++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 252 EHAPSIIFMDEIDSIGS-------ARMESGSGNGDSEVQRTMLELL 290
+ I+++D+ID I R SG G VQ+ +L+L+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEG-----VQQALLKLI 154
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVREL 246
PK +L+ GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVREL 246
PK +L+ GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVREL 246
PK +L+ GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 102
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVREL 246
PK +L+ GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 109
>pdb|2WG5|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
Length = 109
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%)
Query: 54 LNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXX 113
+ +LE + EL S+ L+ E+ L+ P VG V ++ +V+VK K+VV
Sbjct: 9 MKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQ 68
Query: 114 XXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEK 154
P RVAL + + +LP+ DP+V +VE+
Sbjct: 69 YINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG-EGSRMVREL 246
PK +L GP G GKT +AR +A + FI+V ++ + Y+G E ++R+L
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 39/152 (25%)
Query: 199 LLYGPPGTGKTLLARAVAHH----------TDCTFIRVSGSELV--QKYIGEGSRMVREL 246
LL G G GKT +A +A DCT + L+ KY G+ + + L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 247 FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 306
+ SI+F+DEI +I A SG Q+D A+N IK L+
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGG----------------QVD---AANLIKPLL 311
Query: 307 ATNRIDILDQALLRPGRIDRKIEFPNPNEESR 338
++ +I ++ + EF N E+ R
Sbjct: 312 SSGKIRVIGSTTYQ--------EFSNIFEKDR 335
>pdb|2WG6|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
Length = 109
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%)
Query: 54 LNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXX 113
+ +LE + EL S+ L+ E+ L+ VG V ++ +V+VK K+VV
Sbjct: 9 MKQLEDKVEELLSKNYHLENEVARLRSAPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQ 68
Query: 114 XXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEK 154
P RVAL + + +LP+ DP+V +VE+
Sbjct: 69 YINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 191 GIAQPK----GVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSELVQKYIGEGSRMV 243
G+ PK + GP G GKT LARA+A + + IR+ SE ++K+ G ++
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT 572
Query: 244 RELFVMAREHAPSIIFMDEID 264
++ R S++ +D I+
Sbjct: 573 EKV----RRKPYSVVLLDAIE 589
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 196 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKYIGEGSRMV----RELFVM 249
+ VLL GPPGTGKT LA A+A + F GSE+ I + + R + +
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLR 137
Query: 250 AREHAPSII---FMDEIDSIGSARMESG 274
+E P II + ++D + +AR + G
Sbjct: 138 IKEGPPGIIQDVTLHDLD-VANARPQGG 164
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 196 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKYI 236
+ VLL GPPGTGKT LA A+A + F + GSE+ I
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEI 106
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 35.8 bits (81), Expect = 0.044, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 336 ESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQED 395
E RL I + +M+L DL + + + SGA + A+ EAG+ A+R+ R + Q D
Sbjct: 2 ERRL-IFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSD 60
Query: 396 FEMAVAKVMKKE 407
E A A +K +
Sbjct: 61 LEEAYATQVKTD 72
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEG----SRMVRELFVMAREH 253
VLL GPP +GKT LA +A ++ FI++ + K IG + ++++F A +
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKS 122
Query: 254 APSIIFMDEIDSI 266
S + +D+I+ +
Sbjct: 123 QLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIG----EGSRMVRELFVMAREH 253
VLL GPP +GKT LA +A ++ FI++ + K IG + ++++F A +
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKS 123
Query: 254 APSIIFMDEIDSI 266
S + +D+I+ +
Sbjct: 124 QLSCVVVDDIERL 136
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 181 IKHPELFESLGIAQPKGVLLYGPPGTGKTLL 211
IKH ++F L + +G++L GPPG+GKT++
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 181 IKHPELFESLGIAQPKGVLLYGPPGTGKTLL 211
IKH ++F L + +G++L GPPG+GKT++
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 40/147 (27%)
Query: 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELP-IKHPELFESLGIAQPKGVLLYGPPGTGKTL 210
VEK T D + G D+ I+ +K +E I H +L GPPGTGKT
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH--------------LLFSGPPGTGKTA 53
Query: 211 LARAVA-----HHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP------SIIF 259
A A+A + FI ++ S+ G +VR AP IIF
Sbjct: 54 TAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFARTAPIGGAPFKIIF 107
Query: 260 MDEIDSIGSARMESGSGNGDSEVQRTM 286
+DE D++ + + + ++RTM
Sbjct: 108 LDEADAL--------TADAQAALRRTM 126
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 257
VLL GPPG GKT LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 258 IFMDEIDSIGSA 269
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 257
VLL GPPG GKT LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 258 IFMDEIDSIGSA 269
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 257
VLL GPPG GKT LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 258 IFMDEIDSIGSA 269
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 257
VLL GPPG GKT LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 258 IFMDEIDSIGSA 269
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 257
VLL GPPG GKT LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 258 IFMDEIDSIGSA 269
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVS 227
+ L GPPG GKT LA+++A F+R+S
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 196 KGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQKYIGEGSRMV----RELFVM 249
+ VL+ G PGTGKT +A +A D F ++GSE+ + + + R + V
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
Query: 250 AREHAPSIIFMDEIDSIGS 268
+ A + + EID I S
Sbjct: 131 IKAGAVHTVSLHEIDVINS 149
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 40/147 (27%)
Query: 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELP-IKHPELFESLGIAQPKGVLLYGPPGTGKTL 210
VEK T D + G D+ I+ +K +E I H +L GPPGTGKT
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH--------------LLFSGPPGTGKTA 53
Query: 211 LARAVAH-----HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP------SIIF 259
A A+A + FI ++ S+ G +VR AP IIF
Sbjct: 54 TAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFARTAPIGGAPFKIIF 107
Query: 260 MDEIDSIGSARMESGSGNGDSEVQRTM 286
+DE D++ + + + ++RTM
Sbjct: 108 LDEADAL--------TADAQAALRRTM 126
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 196 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSELVQKYIGEGSRMV----RELFVM 249
+ VL+ G PGTGKT +A A D F ++GSE+ + + R + V
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGVR 145
Query: 250 AREHAPSIIF---MDEIDSIGS 268
+E P ++ + EID I S
Sbjct: 146 IKEGPPGVVHTVSLHEIDVINS 167
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 257
VLL GPPG G+T LA +A SG LV++ G+ + ++ L +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 258 IFMDEIDSIGSA 269
+F+DEI + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREH 253
K ++ G G+GK+ LARA+A D F+ S + QK+ ++ V E+F RE+
Sbjct: 4 AKNIVFIGFXGSGKSTLARALAKDLDLVFLD-SDFLIEQKF----NQKVSEIFEQKREN 57
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTG 207
NL VEK T D + G ++ I +++ ++ K P L L YGPPGTG
Sbjct: 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVD-EGKLPHL------------LFYGPPGTG 58
Query: 208 KTLLARAVA 216
KT A+A
Sbjct: 59 KTSTIVALA 67
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 22/89 (24%)
Query: 194 QPKGVLLY-GPPGTGKTLLARAVA---HHTDCTFIRVSGSELVQK------------YIG 237
+P G L+ GP G GKT LA+ +A T+ IR+ +E ++K Y+G
Sbjct: 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVG 645
Query: 238 --EGSRMVRELFVMAREHAPSIIFMDEID 264
EG ++ + R S+I DEI+
Sbjct: 646 YEEGGQLTEAV----RRRPYSVILFDEIE 670
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 173 IKEVIELPIKHPELFES--LGIAQPK-----GVLLYGPPGTGKTLLARAVAH 217
I +++EL P+ S LG A K + L+GP TGKT +A A+AH
Sbjct: 75 IYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 173 IKEVIELPIKHPELFES--LGIAQPK-----GVLLYGPPGTGKTLLARAVAH 217
I +++EL P+ S LG A K + L+GP TGKT +A A+AH
Sbjct: 76 IYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 127
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 191 GIAQPKGV--LLYGPPGTGKTLLARAVAHHTD 220
+ QPKG+ L+ G PGTGKT +A +A D
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELD 35
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 188 ESLGIAQPKGVL---LYGPPGTGKTLLARAVA-------HHTDCTFIRVSGSELVQKYIG 237
+ LG+A L G PGTGKT +A +A + + V+ +LV +YIG
Sbjct: 50 QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIG 109
Query: 238 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297
+ +E+ A ++F+DE + E G E+ ++E N D
Sbjct: 110 HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME--NNRD--- 161
Query: 298 ASNKIKVLMA--TNRIDILDQALLRPG---RIDRKIEFPNPNEESRLDI 341
+ V++A +R++ Q+ PG RI IEFP+ ++E +I
Sbjct: 162 ---DLVVILAGYADRMENFFQS--NPGFRSRIAHHIEFPDYSDEELFEI 205
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 188 ESLGIAQPKGVL---LYGPPGTGKTLLARAVA-------HHTDCTFIRVSGSELVQKYIG 237
+ LG+A L G PGTGKT +A +A + + V+ +LV +YIG
Sbjct: 57 QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIG 116
Query: 238 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297
+ +E+ A ++F+DE + E G E+ ++E N D
Sbjct: 117 HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME--NNRD--- 168
Query: 298 ASNKIKVLMA--TNRIDILDQALLRPG---RIDRKIEFPNPNEESRLDI 341
+ V++A +R++ Q+ PG RI IEFP+ ++E +I
Sbjct: 169 ---DLVVILAGYADRMENFFQS--NPGFRSRIAHHIEFPDYSDEELFEI 212
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 181 IKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGSEL 231
+ H +++ + Q L+ GPPGTGKT+ + + +H C ++ +L
Sbjct: 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQL 416
Query: 232 VQKYIGEGSRMVRELFVMARE 252
+K G ++VR L +RE
Sbjct: 417 TEKIHQTGLKVVR-LCAKSRE 436
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 181 IKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGSEL 231
+ H +++ + Q L+ GPPGTGKT+ + + +H C ++ +L
Sbjct: 180 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQL 239
Query: 232 VQKYIGEGSRMVRELFVMARE 252
+K G ++VR L +RE
Sbjct: 240 TEKIHQTGLKVVR-LCAKSRE 259
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 181 IKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGSEL 231
+ H +++ + Q L+ GPPGTGKT+ + + +H C ++ +L
Sbjct: 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQL 240
Query: 232 VQKYIGEGSRMVRELFVMARE 252
+K G ++VR L +RE
Sbjct: 241 TEKIHQTGLKVVR-LCAKSRE 260
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 40/209 (19%)
Query: 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELP--IKHPELFESLGIAQPKGV--------- 198
++K S Y L Q+ +I + LP P F L +Q V
Sbjct: 320 FAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPN-FAQLNSSQSNAVSHVLQRPLS 378
Query: 199 LLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGSELVQKYIGEGSRMVRELFVM 249
L+ GPPGTGKT+ + + +H C V+ L K G ++VR L
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVR-LTAK 437
Query: 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK---IKVLM 306
+RE S S+ + + + G G + +L+L +++ AS+ +K++
Sbjct: 438 SREDVES--------SVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVR 489
Query: 307 AT-----NRIDILDQALLRPG--RIDRKI 328
T N+ D++ + G R+D K
Sbjct: 490 KTEAEILNKADVVCCTCVGAGDKRLDTKF 518
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 185 ELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH------TDCTFIRVSGSEL-VQKYIG 237
+ E A+ KG+ LYG G GK+ L A+AH T + + V+ I
Sbjct: 142 DFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAIS 201
Query: 238 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE--LLNQLDG 295
GS V+E + A ++ P +I +D IG+ E + EV + +L+ +L +L
Sbjct: 202 NGS--VKEE-IDAVKNVPVLI----LDDIGA---EQATSWVRDEVLQVILQYRMLEELPT 251
Query: 296 FEASN 300
F SN
Sbjct: 252 FFTSN 256
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARA 214
+PD D++ + +++ + EV L +L +P LLYG GTGKT +AR
Sbjct: 13 LPDYVPDVLPHREAELRRLAEV---------LAPALRGEKPSNALLYGLTGTGKTAVARL 63
Query: 215 V 215
V
Sbjct: 64 V 64
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 26/168 (15%)
Query: 188 ESLGIAQPKGVL---LYGPPGTGKTLLARAVA-------HHTDCTFIRVSGSELVQKYIG 237
+ LG+A L G PGTGKT +A A + + V+ +LV +YIG
Sbjct: 57 QKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIG 116
Query: 238 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297
+ +E+ A ++F+DE + E G + +E+L Q+
Sbjct: 117 HTAPKTKEVLKRA---XGGVLFIDEAYYLYRPDNERDYG-------QEAIEILLQVXENN 166
Query: 298 ASNKIKVLMA-TNRIDILDQALLRPG---RIDRKIEFPNPNEESRLDI 341
+ + +L +R + Q+ PG RI IEFP+ ++E +I
Sbjct: 167 RDDLVVILAGYADRXENFFQS--NPGFRSRIAHHIEFPDYSDEELFEI 212
>pdb|3L4C|A Chain A, Structural Basis Of Membrane-Targeting By Dock180
pdb|3L4C|B Chain B, Structural Basis Of Membrane-Targeting By Dock180
Length = 220
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 164 GGLDQQIKEIKEVIELPIKHPELFESLGIAQP 195
G D+ I E K VI +K P FE++ +A P
Sbjct: 70 GAGDEAISEYKSVIYYQVKQPRWFETVKVAIP 101
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234
+ +LYGPPG GKT A VA + + S++ K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229
P + L GP GKT LA A+A C I V +
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 195 PKG----VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVREL--FV 248
P+G VLL GPPG GK +AV ++S EL ++ I EG+++ E ++
Sbjct: 16 PRGSHMRVLLLGPPGAGKG--TQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYL 73
Query: 249 MAREHAPSIIFMDEIDS 265
A + PS + + +D
Sbjct: 74 DAGDLVPSDLTNELVDD 90
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRM 242
VLL GPPG GK +AV ++S EL ++ I EG+++
Sbjct: 3 VLLLGPPGAGKG--TQAVKLAEKLGIPQISTGELFRRNIEEGTKL 45
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 235
+ P LL G PG+GKT L A+ T I + Q++
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH 73
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 194 QPKGVLLYGPPGTGKTLLARAVA 216
Q + VLL G PGTGK++L +A+A
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMA 81
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 194 QPKGVLLY-GPPGTGKTLLARAVA---HHTDCTFIRVSGSELVQKY 235
+P G L+ GP G GKT LA+ +A T+ IR+ +E ++K+
Sbjct: 42 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 87
>pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna
Ligase Bound To Nicked Dna-Adenylate
Length = 671
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 21/62 (33%)
Query: 125 RVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 184
R LR+ Y+ H+ M ++PD+ YD + ++E+ EL KHP
Sbjct: 12 RTTLRHHEYLYHV------------MDAPEIPDAEYDRL---------MRELRELETKHP 50
Query: 185 EL 186
EL
Sbjct: 51 EL 52
>pdb|4GLX|A Chain A, Dna Ligase A In Complex With Inhibitor
Length = 586
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 21/62 (33%)
Query: 125 RVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 184
R LR+ Y+ H+ M ++PD+ YD + ++E+ EL KHP
Sbjct: 12 RTTLRHHEYLYHV------------MDAPEIPDAEYDRL---------MRELRELETKHP 50
Query: 185 EL 186
EL
Sbjct: 51 EL 52
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 194 QPKGVLLY-GPPGTGKTLLARAVA---HHTDCTFIRVSGSELVQKY 235
+P G L+ GP G GKT LA+ +A T+ IR+ +E +K+
Sbjct: 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAXIRIDXTEYXEKH 90
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARA 214
+PD D + + QI++I ++ P+ E +P + +YG GTGKT + +
Sbjct: 14 LPDYIPDELPHREDQIRKIASILA-PLYREE--------KPNNIFIYGLTGTGKTAVVKF 64
Query: 215 V 215
V
Sbjct: 65 V 65
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 17/80 (21%)
Query: 198 VLLYGPPGTGKTLLARAVAH-----HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMARE 252
+L GPPG GKT A A+A + F+ ++ S+ G ++RE
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD------ERGINVIREKVKEFAR 102
Query: 253 HAP------SIIFMDEIDSI 266
P IIF+DE D++
Sbjct: 103 TKPIGGASFKIIFLDEADAL 122
>pdb|2R44|A Chain A, Crystal Structure Of A Putative Atpase (Chu_0153) From
Cytophaga Hutchinsonii Atcc 33406 At 2.00 A Resolution
Length = 331
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 26/186 (13%)
Query: 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG------SELVQKYI---GEGS 240
+GI +LL G PG KTL +A D F R+ S+L+ I +G+
Sbjct: 41 IGICTGGHILLEGVPGLAKTLSVNTLAKTXDLDFHRIQFTPDLLPSDLIGTXIYNQHKGN 100
Query: 241 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 300
V++ V + + I DE++ A+++S E Q T+ + LD N
Sbjct: 101 FEVKKGPVFS-----NFILADEVNR-SPAKVQSALLECXQEKQVTIGDTTYPLD-----N 149
Query: 301 KIKVLMATNRIDILDQALLRPGRIDR---KIEFPNPNEESRLDILKIHSRRMNLMRGIDL 357
VL N ++ L ++DR KI ++ES L++ + R N +
Sbjct: 150 PFLVLATQNPVEQEGTYPLPEAQVDRFXXKIHLTYLDKESELEVXR---RVSNXNFNYQV 206
Query: 358 KKIAEK 363
+KI K
Sbjct: 207 QKIVSK 212
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 340 DILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL-----RERRIHVTQE 394
++L + SR+MNL + + L K EK G + A EA + A+ E+ + ++
Sbjct: 104 EVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQ 163
Query: 395 DFEMAVAKVMKKE 407
+FE + K+MK E
Sbjct: 164 EFEFYIEKIMKGE 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,538,379
Number of Sequences: 62578
Number of extensions: 464062
Number of successful extensions: 1754
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1590
Number of HSP's gapped (non-prelim): 143
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)