Query 014743
Match_columns 419
No_of_seqs 423 out of 4126
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 6.2E-87 1.3E-91 641.9 33.9 356 53-409 43-398 (406)
2 KOG0728 26S proteasome regulat 100.0 4.8E-83 1E-87 588.0 32.9 401 18-419 3-404 (404)
3 KOG0727 26S proteasome regulat 100.0 2.1E-70 4.5E-75 504.9 31.3 369 38-407 32-400 (408)
4 KOG0726 26S proteasome regulat 100.0 9.9E-71 2.1E-75 515.4 24.3 376 28-408 56-431 (440)
5 KOG0652 26S proteasome regulat 100.0 9.1E-66 2E-70 476.0 29.5 373 37-410 26-419 (424)
6 KOG0729 26S proteasome regulat 100.0 2.4E-65 5.3E-70 474.4 21.3 374 34-408 41-423 (435)
7 PTZ00454 26S protease regulato 100.0 1E-61 2.2E-66 491.1 34.4 373 34-407 18-390 (398)
8 PTZ00361 26 proteosome regulat 100.0 8.6E-60 1.9E-64 480.3 33.7 366 41-407 61-428 (438)
9 KOG0730 AAA+-type ATPase [Post 100.0 2.4E-59 5.1E-64 479.5 24.7 308 79-418 380-689 (693)
10 PRK03992 proteasome-activating 100.0 1.9E-57 4E-62 461.1 33.4 374 36-410 6-379 (389)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 1.6E-57 3.4E-62 460.2 24.4 265 143-411 493-777 (802)
12 TIGR01242 26Sp45 26S proteasom 100.0 1.7E-54 3.7E-59 436.6 33.2 361 42-403 3-363 (364)
13 KOG0651 26S proteasome regulat 100.0 2.7E-55 5.9E-60 414.9 18.5 354 49-404 21-374 (388)
14 KOG0736 Peroxisome assembly fa 100.0 9.5E-54 2.1E-58 441.9 24.4 265 149-416 660-945 (953)
15 KOG0734 AAA+-type ATPase conta 100.0 1.9E-51 4.1E-56 410.6 21.4 248 154-406 297-544 (752)
16 KOG0738 AAA+-type ATPase [Post 100.0 5.3E-50 1.2E-54 388.4 22.3 261 152-418 203-484 (491)
17 KOG0731 AAA+-type ATPase conta 100.0 7.4E-49 1.6E-53 413.0 24.4 252 155-407 305-557 (774)
18 KOG0733 Nuclear AAA ATPase (VC 100.0 7.6E-49 1.7E-53 397.2 20.7 226 156-386 185-414 (802)
19 TIGR03689 pup_AAA proteasome A 100.0 5.7E-47 1.2E-51 391.1 31.3 364 40-407 3-482 (512)
20 COG0465 HflB ATP-dependent Zn 100.0 1.9E-46 4.1E-51 388.8 21.8 251 155-407 144-394 (596)
21 TIGR01243 CDC48 AAA family ATP 100.0 3.2E-45 6.9E-50 399.2 27.2 263 153-418 445-725 (733)
22 KOG0739 AAA+-type ATPase [Post 100.0 1.3E-45 2.8E-50 347.3 16.5 256 151-413 123-426 (439)
23 COG0464 SpoVK ATPases of the A 100.0 1.2E-44 2.6E-49 378.9 25.2 251 153-407 234-487 (494)
24 KOG0735 AAA+-type ATPase [Post 100.0 1.2E-44 2.6E-49 371.5 22.4 226 157-386 663-888 (952)
25 COG1223 Predicted ATPase (AAA+ 100.0 9.9E-45 2.1E-49 335.9 19.7 248 153-409 113-361 (368)
26 KOG0737 AAA+-type ATPase [Post 100.0 5E-43 1.1E-47 339.6 21.9 244 158-407 89-363 (386)
27 TIGR01241 FtsH_fam ATP-depende 100.0 2.6E-42 5.6E-47 361.0 26.0 251 153-405 47-297 (495)
28 CHL00195 ycf46 Ycf46; Provisio 100.0 5.8E-42 1.3E-46 354.1 26.0 254 156-418 223-480 (489)
29 CHL00176 ftsH cell division pr 100.0 7.9E-41 1.7E-45 355.5 25.1 249 155-405 177-425 (638)
30 PRK10733 hflB ATP-dependent me 100.0 1.4E-38 3E-43 341.2 26.1 249 156-406 147-395 (644)
31 KOG0741 AAA+-type ATPase [Post 100.0 4.7E-39 1E-43 321.6 17.4 260 155-416 213-503 (744)
32 KOG0730 AAA+-type ATPase [Post 100.0 1E-38 2.2E-43 327.8 19.4 241 156-408 180-421 (693)
33 CHL00206 ycf2 Ycf2; Provisiona 100.0 6.5E-38 1.4E-42 349.9 22.5 218 180-407 1615-1881(2281)
34 KOG0732 AAA+-type ATPase conta 100.0 2.6E-38 5.7E-43 340.9 18.2 251 155-409 259-531 (1080)
35 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-36 3.5E-41 330.9 25.8 250 154-407 171-439 (733)
36 KOG0740 AAA+-type ATPase [Post 100.0 2E-37 4.4E-42 310.1 17.1 261 151-418 143-419 (428)
37 PLN00020 ribulose bisphosphate 100.0 1.9E-33 4E-38 275.7 22.6 240 158-405 112-393 (413)
38 COG0542 clpA ATP-binding subun 99.9 4.9E-27 1.1E-31 249.9 14.0 225 126-380 462-751 (786)
39 CHL00181 cbbX CbbX; Provisiona 99.9 3E-23 6.4E-28 202.5 20.5 210 161-385 23-256 (287)
40 KOG0744 AAA+-type ATPase [Post 99.9 1.5E-23 3.3E-28 200.3 14.6 243 159-409 140-420 (423)
41 TIGR02880 cbbX_cfxQ probable R 99.9 1.6E-22 3.5E-27 197.2 19.8 211 161-385 22-255 (284)
42 KOG0743 AAA+-type ATPase [Post 99.9 8.5E-23 1.8E-27 203.9 16.4 210 157-376 197-413 (457)
43 PF00004 AAA: ATPase family as 99.9 9.5E-23 2.1E-27 174.6 14.3 130 198-332 1-132 (132)
44 TIGR02881 spore_V_K stage V sp 99.9 2.5E-22 5.4E-27 193.8 18.4 211 160-385 5-240 (261)
45 KOG0742 AAA+-type ATPase [Post 99.9 1E-21 2.2E-26 192.5 20.3 234 156-405 350-614 (630)
46 KOG0735 AAA+-type ATPase [Post 99.9 6.1E-22 1.3E-26 204.8 19.5 232 161-407 408-652 (952)
47 TIGR00763 lon ATP-dependent pr 99.9 2.2E-21 4.7E-26 212.9 21.6 222 161-401 320-584 (775)
48 KOG0736 Peroxisome assembly fa 99.9 3.3E-21 7.2E-26 201.0 19.7 237 162-409 402-659 (953)
49 COG0464 SpoVK ATPases of the A 99.9 1.1E-20 2.5E-25 198.0 21.2 222 179-406 2-229 (494)
50 TIGR03345 VI_ClpV1 type VI sec 99.9 2.6E-20 5.7E-25 205.2 22.6 234 115-382 529-829 (852)
51 TIGR02639 ClpA ATP-dependent C 99.8 5.5E-20 1.2E-24 200.9 20.4 224 155-404 176-430 (731)
52 CHL00095 clpC Clp protease ATP 99.8 6.2E-20 1.3E-24 202.7 19.2 234 115-381 472-779 (821)
53 TIGR03346 chaperone_ClpB ATP-d 99.8 2.4E-19 5.1E-24 198.6 23.8 239 113-384 526-826 (852)
54 PRK10865 protein disaggregatio 99.8 2.9E-19 6.4E-24 197.4 22.8 237 113-382 529-827 (857)
55 PF05496 RuvB_N: Holliday junc 99.8 1.7E-19 3.7E-24 167.2 16.7 197 153-380 16-226 (233)
56 PRK00080 ruvB Holliday junctio 99.8 6.2E-19 1.3E-23 175.6 22.1 220 153-403 17-250 (328)
57 PRK11034 clpA ATP-dependent Cl 99.8 5.1E-20 1.1E-24 199.8 14.6 201 161-383 458-715 (758)
58 TIGR00635 ruvB Holliday juncti 99.8 8.6E-19 1.9E-23 172.5 20.9 214 159-403 2-229 (305)
59 TIGR02639 ClpA ATP-dependent C 99.8 8.2E-20 1.8E-24 199.5 13.3 199 161-383 454-711 (731)
60 PRK11034 clpA ATP-dependent Cl 99.8 6.5E-19 1.4E-23 191.2 19.3 223 157-405 182-435 (758)
61 COG2255 RuvB Holliday junction 99.8 1.1E-17 2.4E-22 158.2 19.0 219 154-403 19-251 (332)
62 KOG1051 Chaperone HSP104 and r 99.8 4.1E-18 8.9E-23 184.2 16.4 163 161-347 562-785 (898)
63 TIGR02902 spore_lonB ATP-depen 99.8 9E-18 1.9E-22 177.0 18.1 221 151-401 55-330 (531)
64 PRK04195 replication factor C 99.8 2.9E-17 6.3E-22 171.7 20.2 212 149-399 2-221 (482)
65 PRK14962 DNA polymerase III su 99.8 4.8E-17 1E-21 168.7 21.6 206 153-401 6-240 (472)
66 PRK14961 DNA polymerase III su 99.8 6.3E-17 1.4E-21 163.3 21.9 207 152-401 7-242 (363)
67 TIGR02928 orc1/cdc6 family rep 99.8 8.9E-17 1.9E-21 161.9 22.9 221 161-405 15-276 (365)
68 TIGR03345 VI_ClpV1 type VI sec 99.8 4.3E-17 9.3E-22 179.9 22.2 220 155-401 181-429 (852)
69 PRK14956 DNA polymerase III su 99.8 4.3E-17 9.2E-22 167.3 20.3 205 151-398 8-241 (484)
70 PRK07003 DNA polymerase III su 99.8 6.5E-17 1.4E-21 171.9 21.9 191 152-381 7-226 (830)
71 PRK12323 DNA polymerase III su 99.8 3.7E-17 7.9E-22 171.8 19.1 191 152-381 7-231 (700)
72 PRK12402 replication factor C 99.7 1.2E-16 2.5E-21 159.0 21.6 214 149-401 3-247 (337)
73 PRK13342 recombination factor 99.7 1E-16 2.2E-21 164.6 21.3 205 152-404 3-220 (413)
74 PRK14960 DNA polymerase III su 99.7 8.2E-17 1.8E-21 169.5 20.9 204 152-398 6-238 (702)
75 PRK10787 DNA-binding ATP-depen 99.7 2.1E-17 4.7E-22 180.5 16.6 221 161-401 322-580 (784)
76 PHA02544 44 clamp loader, smal 99.7 2.1E-16 4.4E-21 156.3 21.8 165 149-347 9-174 (316)
77 COG2256 MGS1 ATPase related to 99.7 1.2E-16 2.6E-21 157.7 19.7 206 154-405 17-240 (436)
78 PRK05342 clpX ATP-dependent pr 99.7 7.5E-17 1.6E-21 164.4 19.0 224 161-386 71-381 (412)
79 COG0466 Lon ATP-dependent Lon 99.7 6.1E-17 1.3E-21 169.1 18.4 222 161-401 323-582 (782)
80 PRK00411 cdc6 cell division co 99.7 2E-16 4.3E-21 161.0 21.7 222 161-405 30-284 (394)
81 KOG2004 Mitochondrial ATP-depe 99.7 1.2E-17 2.5E-22 173.6 12.6 168 161-347 411-597 (906)
82 PRK06645 DNA polymerase III su 99.7 1.8E-16 3.9E-21 165.2 21.3 217 150-400 10-253 (507)
83 PRK14958 DNA polymerase III su 99.7 8E-17 1.7E-21 168.6 18.7 207 151-400 6-241 (509)
84 PRK07994 DNA polymerase III su 99.7 2.2E-16 4.8E-21 167.9 21.2 205 152-399 7-240 (647)
85 PRK14949 DNA polymerase III su 99.7 3.3E-16 7.2E-21 169.3 22.4 190 152-380 7-225 (944)
86 TIGR00382 clpX endopeptidase C 99.7 1.6E-16 3.5E-21 161.4 18.5 223 161-386 77-387 (413)
87 PRK10865 protein disaggregatio 99.7 8E-17 1.7E-21 178.2 17.5 170 155-351 172-359 (857)
88 PLN03025 replication factor C 99.7 3.2E-16 7E-21 155.5 19.9 188 150-377 2-202 (319)
89 CHL00095 clpC Clp protease ATP 99.7 3.7E-16 8.1E-21 172.8 20.1 200 156-382 174-400 (821)
90 PRK08691 DNA polymerase III su 99.7 5.8E-16 1.3E-20 164.4 19.9 207 152-401 7-242 (709)
91 PRK14951 DNA polymerase III su 99.7 8.5E-16 1.9E-20 163.1 20.9 206 151-399 6-245 (618)
92 PRK14964 DNA polymerase III su 99.7 1.5E-15 3.2E-20 157.4 21.5 204 153-399 5-237 (491)
93 TIGR03346 chaperone_ClpB ATP-d 99.7 1E-15 2.2E-20 169.9 21.5 203 154-383 166-396 (852)
94 PRK07940 DNA polymerase III su 99.7 5.3E-16 1.2E-20 157.4 17.5 185 159-375 3-214 (394)
95 PRK14963 DNA polymerase III su 99.7 1.3E-15 2.8E-20 159.2 20.9 204 153-400 6-237 (504)
96 TIGR02397 dnaX_nterm DNA polym 99.7 1.5E-15 3.3E-20 152.3 20.6 207 151-400 4-239 (355)
97 TIGR00390 hslU ATP-dependent p 99.7 7.6E-16 1.7E-20 154.9 17.9 244 161-406 12-433 (441)
98 PRK14959 DNA polymerase III su 99.7 1.5E-15 3.3E-20 160.4 20.2 206 151-399 6-240 (624)
99 PRK05896 DNA polymerase III su 99.7 1.6E-15 3.5E-20 159.5 19.6 206 150-398 5-239 (605)
100 PRK05201 hslU ATP-dependent pr 99.7 8E-16 1.7E-20 154.9 16.5 244 161-406 15-435 (443)
101 PRK14952 DNA polymerase III su 99.7 2.8E-15 6.2E-20 158.5 21.4 204 153-398 5-239 (584)
102 PRK14957 DNA polymerase III su 99.7 2.7E-15 5.9E-20 157.4 21.0 206 152-400 7-241 (546)
103 KOG0989 Replication factor C, 99.7 1.8E-15 3.9E-20 144.7 17.3 194 149-379 24-234 (346)
104 PRK00440 rfc replication facto 99.7 3.6E-15 7.7E-20 147.2 20.2 208 149-401 5-224 (319)
105 PRK07764 DNA polymerase III su 99.7 2.5E-15 5.3E-20 164.5 20.6 190 152-380 6-226 (824)
106 PRK00149 dnaA chromosomal repl 99.7 5.7E-15 1.2E-19 153.3 22.1 221 156-405 117-351 (450)
107 PRK05563 DNA polymerase III su 99.7 4.5E-15 9.7E-20 157.3 21.6 203 153-398 8-239 (559)
108 PRK14969 DNA polymerase III su 99.7 1.5E-15 3.3E-20 159.8 17.8 206 152-400 7-241 (527)
109 TIGR00362 DnaA chromosomal rep 99.7 7.5E-15 1.6E-19 150.4 22.4 220 156-405 105-339 (405)
110 PTZ00112 origin recognition co 99.7 3.3E-15 7.1E-20 159.8 19.1 219 161-406 755-1009(1164)
111 PRK14970 DNA polymerase III su 99.7 4.1E-15 8.8E-20 150.3 19.1 214 150-400 6-230 (367)
112 PRK14953 DNA polymerase III su 99.7 6.4E-15 1.4E-19 153.5 20.8 207 151-400 6-241 (486)
113 PRK13341 recombination factor 99.7 4.1E-15 8.9E-20 161.0 20.0 209 151-402 18-246 (725)
114 PRK07133 DNA polymerase III su 99.7 5.1E-15 1.1E-19 158.6 20.4 212 151-399 8-239 (725)
115 PRK06893 DNA replication initi 99.6 1.3E-14 2.9E-19 137.3 19.7 211 154-400 9-227 (229)
116 PRK14955 DNA polymerase III su 99.6 5.3E-15 1.1E-19 151.1 18.1 209 153-400 8-254 (397)
117 COG1474 CDC6 Cdc6-related prot 99.6 2.6E-14 5.7E-19 143.8 22.7 221 161-407 17-269 (366)
118 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.9E-14 4.2E-19 135.1 20.5 202 158-400 12-225 (226)
119 PRK14965 DNA polymerase III su 99.6 1.3E-14 2.9E-19 154.3 20.5 205 152-399 7-240 (576)
120 PRK06305 DNA polymerase III su 99.6 1.6E-14 3.6E-19 149.4 20.2 205 152-399 8-242 (451)
121 PRK14088 dnaA chromosomal repl 99.6 3.9E-14 8.4E-19 146.3 22.9 220 155-405 99-334 (440)
122 PRK08451 DNA polymerase III su 99.6 3.1E-14 6.8E-19 148.8 22.1 193 152-383 5-226 (535)
123 PRK09111 DNA polymerase III su 99.6 3.1E-14 6.6E-19 151.4 21.9 213 151-400 14-254 (598)
124 PRK06647 DNA polymerase III su 99.6 2.6E-14 5.7E-19 151.2 20.3 204 153-399 8-240 (563)
125 TIGR02640 gas_vesic_GvpN gas v 99.6 2E-14 4.4E-19 138.8 17.8 189 194-406 20-260 (262)
126 PRK14086 dnaA chromosomal repl 99.6 5.6E-14 1.2E-18 148.0 22.1 192 196-406 315-518 (617)
127 PRK08903 DnaA regulatory inact 99.6 9.4E-14 2E-18 131.0 21.2 202 155-401 12-224 (227)
128 PRK12422 chromosomal replicati 99.6 1.2E-13 2.6E-18 142.6 22.5 192 196-405 142-345 (445)
129 TIGR02903 spore_lon_C ATP-depe 99.6 9.5E-14 2.1E-18 148.8 22.4 219 155-403 148-430 (615)
130 PRK14954 DNA polymerase III su 99.6 6.3E-14 1.4E-18 149.3 20.8 215 153-400 8-254 (620)
131 PRK08727 hypothetical protein; 99.6 1.7E-13 3.7E-18 130.2 21.6 206 155-401 13-229 (233)
132 PF05673 DUF815: Protein of un 99.6 7E-14 1.5E-18 131.5 17.9 196 152-377 18-243 (249)
133 PRK08084 DNA replication initi 99.6 2.3E-13 4.9E-18 129.4 21.2 206 155-400 16-233 (235)
134 PRK14950 DNA polymerase III su 99.6 9.9E-14 2.1E-18 148.2 20.2 204 153-399 8-241 (585)
135 PRK13407 bchI magnesium chelat 99.6 4.3E-14 9.2E-19 140.5 14.7 221 156-405 3-308 (334)
136 KOG2028 ATPase related to the 99.6 6.7E-14 1.4E-18 136.4 15.5 209 152-402 129-367 (554)
137 PRK14948 DNA polymerase III su 99.5 5.6E-13 1.2E-17 142.6 22.7 194 152-378 7-225 (620)
138 cd00009 AAA The AAA+ (ATPases 99.5 1.2E-13 2.6E-18 118.5 14.2 142 164-332 1-151 (151)
139 PRK14087 dnaA chromosomal repl 99.5 6.6E-13 1.4E-17 137.5 21.9 190 196-404 142-349 (450)
140 TIGR02030 BchI-ChlI magnesium 99.5 1.4E-13 2.9E-18 137.1 16.0 220 159-407 2-313 (337)
141 PF07724 AAA_2: AAA domain (Cd 99.5 2.6E-14 5.6E-19 129.3 9.7 113 194-312 2-131 (171)
142 CHL00081 chlI Mg-protoporyphyr 99.5 3.6E-13 7.9E-18 134.2 18.8 225 155-407 11-326 (350)
143 PRK14971 DNA polymerase III su 99.5 5.5E-13 1.2E-17 142.7 19.9 192 151-381 7-228 (614)
144 TIGR01650 PD_CobS cobaltochela 99.5 8.1E-14 1.8E-18 137.0 10.3 174 193-381 62-282 (327)
145 PF00308 Bac_DnaA: Bacterial d 99.5 2.5E-12 5.3E-17 121.0 18.3 196 156-381 3-214 (219)
146 COG2812 DnaX DNA polymerase II 99.5 6.5E-13 1.4E-17 137.6 14.2 224 153-409 8-262 (515)
147 PRK06620 hypothetical protein; 99.5 6.1E-12 1.3E-16 117.9 19.4 196 154-400 9-213 (214)
148 PRK05642 DNA replication initi 99.5 1.2E-11 2.6E-16 117.5 21.5 179 195-400 45-232 (234)
149 TIGR00764 lon_rel lon-related 99.4 2.9E-12 6.3E-17 137.1 18.7 125 279-405 230-393 (608)
150 COG0714 MoxR-like ATPases [Gen 99.4 4.7E-12 1E-16 126.3 18.8 149 162-343 25-200 (329)
151 TIGR02442 Cob-chelat-sub cobal 99.4 1.7E-12 3.7E-17 139.8 16.9 219 159-406 2-307 (633)
152 PRK09112 DNA polymerase III su 99.4 4.1E-12 8.9E-17 127.4 18.4 188 155-376 17-241 (351)
153 COG1224 TIP49 DNA helicase TIP 99.4 7.6E-12 1.6E-16 122.0 19.3 133 255-408 292-437 (450)
154 PRK07471 DNA polymerase III su 99.4 5.3E-12 1.1E-16 127.3 17.3 180 155-369 13-233 (365)
155 PRK05564 DNA polymerase III su 99.4 1.3E-11 2.8E-16 122.2 19.0 172 159-369 2-185 (313)
156 PRK13531 regulatory ATPase Rav 99.4 3.2E-11 7E-16 124.0 20.8 220 161-410 20-290 (498)
157 TIGR03015 pepcterm_ATPase puta 99.4 3E-11 6.5E-16 116.4 19.5 192 195-404 43-267 (269)
158 smart00382 AAA ATPases associa 99.4 1.1E-11 2.4E-16 105.1 13.8 126 195-333 2-147 (148)
159 COG0542 clpA ATP-binding subun 99.4 3.1E-11 6.8E-16 129.7 19.2 173 156-354 165-354 (786)
160 KOG1969 DNA replication checkp 99.4 5.4E-11 1.2E-15 124.9 20.0 212 150-386 260-518 (877)
161 PHA02244 ATPase-like protein 99.4 3.2E-11 6.9E-16 120.2 17.5 131 194-342 118-269 (383)
162 COG0593 DnaA ATPase involved i 99.3 1.2E-10 2.7E-15 117.6 21.6 194 195-408 113-318 (408)
163 TIGR00678 holB DNA polymerase 99.3 2E-11 4.3E-16 111.9 14.2 144 193-366 12-183 (188)
164 PRK09087 hypothetical protein; 99.3 3.8E-11 8.2E-16 113.5 16.3 173 195-403 44-222 (226)
165 COG2607 Predicted ATPase (AAA+ 99.3 1E-10 2.2E-15 108.9 17.9 194 154-377 53-275 (287)
166 PF07728 AAA_5: AAA domain (dy 99.3 2.4E-12 5.2E-17 111.9 6.3 112 197-324 1-139 (139)
167 PRK07399 DNA polymerase III su 99.3 7E-11 1.5E-15 116.9 16.0 178 159-371 2-218 (314)
168 TIGR00602 rad24 checkpoint pro 99.3 7.1E-11 1.5E-15 126.1 17.1 205 149-381 72-326 (637)
169 TIGR00368 Mg chelatase-related 99.3 1.4E-10 3E-15 121.3 18.6 212 158-401 189-497 (499)
170 COG1220 HslU ATP-dependent pro 99.3 2.1E-11 4.5E-16 118.2 11.4 87 255-343 251-346 (444)
171 PRK11331 5-methylcytosine-spec 99.3 4.7E-11 1E-15 121.9 14.4 144 160-332 174-357 (459)
172 COG0470 HolB ATPase involved i 99.3 1E-10 2.2E-15 115.5 15.5 148 162-342 2-177 (325)
173 TIGR01817 nifA Nif-specific re 99.3 4.2E-11 9.1E-16 127.0 12.7 210 157-397 192-439 (534)
174 TIGR02031 BchD-ChlD magnesium 99.2 3.3E-10 7.2E-15 121.1 19.0 196 195-406 16-261 (589)
175 smart00350 MCM minichromosome 99.2 2.7E-10 5.9E-15 120.0 17.9 194 195-405 236-506 (509)
176 COG1219 ClpX ATP-dependent pro 99.2 5.5E-11 1.2E-15 114.5 11.4 128 161-291 61-201 (408)
177 KOG0991 Replication factor C, 99.2 8.9E-11 1.9E-15 108.7 11.2 139 149-320 15-162 (333)
178 PRK08058 DNA polymerase III su 99.2 1.3E-10 2.9E-15 115.9 13.0 148 160-344 4-180 (329)
179 PRK11388 DNA-binding transcrip 99.2 3.1E-10 6.8E-15 122.9 15.6 212 157-400 321-568 (638)
180 PRK11608 pspF phage shock prot 99.2 2.8E-10 6E-15 113.4 13.8 196 160-383 5-240 (326)
181 smart00763 AAA_PrkA PrkA AAA d 99.2 5.6E-10 1.2E-14 111.2 15.5 59 162-228 52-118 (361)
182 PRK05707 DNA polymerase III su 99.2 5.5E-10 1.2E-14 111.2 15.0 130 193-345 20-177 (328)
183 TIGR02329 propionate_PrpR prop 99.2 3.7E-10 8.1E-15 118.9 14.1 212 158-397 209-464 (526)
184 TIGR02974 phageshock_pspF psp 99.2 3.3E-10 7.1E-15 113.0 12.9 193 163-383 1-233 (329)
185 PRK09862 putative ATP-dependen 99.2 2.1E-09 4.6E-14 112.2 19.3 212 158-401 188-490 (506)
186 PF05621 TniB: Bacterial TniB 99.1 3.7E-09 8E-14 102.7 19.0 211 162-398 35-284 (302)
187 PF01078 Mg_chelatase: Magnesi 99.1 1.2E-10 2.5E-15 107.6 7.9 46 159-219 1-46 (206)
188 PF06068 TIP49: TIP49 C-termin 99.1 2.5E-09 5.3E-14 106.0 17.6 64 161-232 24-89 (398)
189 PRK04132 replication factor C 99.1 1.5E-09 3.3E-14 118.8 17.7 157 196-379 565-735 (846)
190 PRK15424 propionate catabolism 99.1 5.2E-10 1.1E-14 117.8 13.2 198 158-383 216-465 (538)
191 PF07726 AAA_3: ATPase family 99.1 8.1E-11 1.7E-15 100.4 5.5 107 197-324 1-129 (131)
192 KOG0745 Putative ATP-dependent 99.1 2.4E-09 5.2E-14 107.0 16.6 96 196-291 227-330 (564)
193 COG1116 TauB ABC-type nitrate/ 99.1 5.4E-10 1.2E-14 105.2 11.5 132 190-335 24-222 (248)
194 PRK13765 ATP-dependent proteas 99.1 1.1E-09 2.4E-14 117.3 15.3 133 256-402 228-399 (637)
195 PRK05022 anaerobic nitric oxid 99.1 2.1E-09 4.5E-14 113.5 16.9 198 159-384 185-421 (509)
196 PRK10820 DNA-binding transcrip 99.1 1.2E-09 2.5E-14 115.6 14.5 210 155-395 198-446 (520)
197 PF00158 Sigma54_activat: Sigm 99.1 1.9E-09 4E-14 97.4 13.7 122 163-310 1-143 (168)
198 KOG1514 Origin recognition com 99.1 5.6E-09 1.2E-13 109.7 18.6 224 162-407 397-659 (767)
199 COG1221 PspF Transcriptional r 99.1 8.3E-10 1.8E-14 111.3 11.9 201 156-384 73-310 (403)
200 PF13177 DNA_pol3_delta2: DNA 99.1 1.2E-09 2.6E-14 98.0 11.7 134 165-333 1-161 (162)
201 KOG0741 AAA+-type ATPase [Post 99.1 1.1E-09 2.5E-14 111.4 12.7 142 195-344 538-684 (744)
202 PRK08116 hypothetical protein; 99.1 2E-09 4.3E-14 104.4 14.0 124 194-335 113-251 (268)
203 PF03215 Rad17: Rad17 cell cyc 99.1 3.5E-09 7.5E-14 111.2 16.5 211 148-384 6-269 (519)
204 KOG1942 DNA helicase, TBP-inte 99.0 1.2E-08 2.7E-13 97.5 17.7 133 254-407 296-442 (456)
205 PF01637 Arch_ATPase: Archaeal 99.0 6.5E-09 1.4E-13 97.0 15.0 178 164-367 2-227 (234)
206 PRK15429 formate hydrogenlyase 99.0 5.5E-09 1.2E-13 114.1 16.2 198 158-383 373-609 (686)
207 KOG0990 Replication factor C, 99.0 2.1E-09 4.5E-14 103.9 10.9 163 148-346 28-203 (360)
208 COG3829 RocR Transcriptional r 99.0 3.8E-09 8.2E-14 108.7 13.0 197 157-382 241-478 (560)
209 PRK06871 DNA polymerase III su 99.0 1.4E-08 2.9E-13 100.8 16.5 144 166-345 7-178 (325)
210 COG2204 AtoC Response regulato 99.0 4.7E-09 1E-13 107.7 13.5 196 159-383 139-374 (464)
211 PRK12377 putative replication 99.0 4.5E-09 9.7E-14 100.6 12.2 101 195-311 101-206 (248)
212 PRK07993 DNA polymerase III su 99.0 1E-08 2.2E-13 102.4 14.9 143 167-344 8-178 (334)
213 PRK06964 DNA polymerase III su 99.0 4.1E-09 8.8E-14 105.3 12.0 132 193-344 19-202 (342)
214 COG1239 ChlI Mg-chelatase subu 98.9 1.7E-08 3.6E-13 101.4 15.2 219 158-405 14-324 (423)
215 cd03216 ABC_Carb_Monos_I This 98.9 7.8E-09 1.7E-13 92.7 11.6 112 190-316 21-147 (163)
216 PRK08769 DNA polymerase III su 98.9 2E-08 4.4E-13 99.4 15.6 168 166-370 9-204 (319)
217 PRK07952 DNA replication prote 98.9 8.1E-09 1.8E-13 98.6 12.1 100 196-311 100-205 (244)
218 COG1136 SalX ABC-type antimicr 98.9 9.9E-09 2.1E-13 96.2 12.1 122 189-331 25-216 (226)
219 PRK08181 transposase; Validate 98.9 6.1E-09 1.3E-13 100.8 10.9 101 194-311 105-209 (269)
220 COG1126 GlnQ ABC-type polar am 98.9 8.4E-09 1.8E-13 95.1 10.9 108 191-313 24-198 (240)
221 PRK06090 DNA polymerase III su 98.9 1.1E-07 2.3E-12 94.3 19.6 144 166-344 8-178 (319)
222 KOG2680 DNA helicase TIP49, TB 98.9 8.8E-08 1.9E-12 92.0 17.4 134 255-409 289-435 (454)
223 KOG2035 Replication factor C, 98.9 7.9E-08 1.7E-12 91.5 17.0 221 150-405 2-260 (351)
224 PRK10923 glnG nitrogen regulat 98.9 3.9E-08 8.4E-13 102.6 16.5 211 159-400 136-385 (469)
225 PRK06835 DNA replication prote 98.9 1.9E-08 4.2E-13 100.1 13.0 122 195-334 183-318 (329)
226 KOG2227 Pre-initiation complex 98.9 9.2E-08 2E-12 96.8 17.6 224 161-407 150-419 (529)
227 PTZ00111 DNA replication licen 98.9 5.2E-08 1.1E-12 106.7 17.1 131 193-341 490-652 (915)
228 COG2884 FtsE Predicted ATPase 98.9 2E-08 4.2E-13 90.9 11.4 59 244-317 145-203 (223)
229 PRK06526 transposase; Provisio 98.9 4.6E-09 1E-13 101.0 7.8 101 194-311 97-201 (254)
230 PRK08699 DNA polymerase III su 98.8 2.3E-08 5.1E-13 99.5 12.2 131 193-343 19-182 (325)
231 PF14532 Sigma54_activ_2: Sigm 98.8 9.8E-09 2.1E-13 89.4 8.4 126 164-332 1-137 (138)
232 PF13173 AAA_14: AAA domain 98.8 3.8E-08 8.3E-13 84.5 11.7 120 196-337 3-126 (128)
233 PRK09183 transposase/IS protei 98.8 1.3E-08 2.8E-13 98.2 9.7 103 193-311 100-206 (259)
234 TIGR02915 PEP_resp_reg putativ 98.8 4.7E-08 1E-12 101.3 14.5 196 160-383 138-372 (445)
235 COG3604 FhlA Transcriptional r 98.8 3.5E-08 7.6E-13 100.6 13.1 198 157-383 219-456 (550)
236 COG1124 DppF ABC-type dipeptid 98.8 2.5E-08 5.3E-13 93.5 10.8 114 189-316 27-207 (252)
237 COG1121 ZnuC ABC-type Mn/Zn tr 98.8 3.5E-08 7.6E-13 93.9 11.8 61 243-318 146-206 (254)
238 TIGR01818 ntrC nitrogen regula 98.8 4.5E-08 9.8E-13 101.8 13.8 212 161-400 134-381 (463)
239 PRK11361 acetoacetate metaboli 98.8 6.9E-08 1.5E-12 100.2 14.9 208 161-399 143-389 (457)
240 cd03214 ABC_Iron-Siderophores_ 98.8 3.5E-08 7.6E-13 89.8 11.1 114 189-316 19-163 (180)
241 COG1120 FepC ABC-type cobalami 98.8 2.9E-08 6.3E-13 94.9 10.5 109 190-312 23-200 (258)
242 COG1127 Ttg2A ABC-type transpo 98.8 3.5E-08 7.6E-13 92.3 10.5 112 191-316 30-211 (263)
243 PRK13537 nodulation ABC transp 98.8 3.6E-08 7.9E-13 97.4 11.3 113 189-316 27-203 (306)
244 cd03222 ABC_RNaseL_inhibitor T 98.8 6.3E-08 1.4E-12 88.2 11.6 110 191-315 21-136 (177)
245 PRK15115 response regulator Gl 98.8 1.2E-07 2.6E-12 98.2 15.3 184 195-399 157-380 (444)
246 COG1484 DnaC DNA replication p 98.8 4E-08 8.7E-13 94.5 10.6 119 165-312 87-210 (254)
247 cd00267 ABC_ATPase ABC (ATP-bi 98.8 7E-08 1.5E-12 85.7 11.4 113 190-317 20-146 (157)
248 cd03246 ABCC_Protease_Secretio 98.8 8E-08 1.7E-12 86.9 11.9 110 190-314 23-159 (173)
249 COG1125 OpuBA ABC-type proline 98.8 4.5E-08 9.7E-13 92.3 10.4 129 190-335 22-222 (309)
250 PRK08939 primosomal protein Dn 98.8 4.4E-08 9.6E-13 96.7 11.0 102 194-311 155-261 (306)
251 cd03228 ABCC_MRP_Like The MRP 98.8 8.8E-08 1.9E-12 86.4 12.0 110 190-315 23-159 (171)
252 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 7.3E-08 1.6E-12 84.6 11.1 106 190-314 21-130 (144)
253 cd03238 ABC_UvrA The excision 98.8 4.9E-08 1.1E-12 88.8 10.3 120 190-331 16-162 (176)
254 PF01695 IstB_IS21: IstB-like 98.8 1.4E-08 3.1E-13 92.5 6.6 102 193-311 45-150 (178)
255 COG0606 Predicted ATPase with 98.8 1.9E-08 4.2E-13 102.3 7.9 46 158-218 176-221 (490)
256 COG1118 CysA ABC-type sulfate/ 98.7 6E-08 1.3E-12 93.7 10.8 111 190-314 23-201 (345)
257 COG1131 CcmA ABC-type multidru 98.7 6.8E-08 1.5E-12 94.9 11.6 114 190-317 26-203 (293)
258 cd03247 ABCC_cytochrome_bd The 98.7 1.1E-07 2.4E-12 86.3 12.2 111 189-315 22-161 (178)
259 COG3842 PotA ABC-type spermidi 98.7 3.4E-08 7.4E-13 98.4 9.2 129 190-335 26-223 (352)
260 TIGR01188 drrA daunorubicin re 98.7 7.6E-08 1.7E-12 94.9 11.4 112 190-316 14-189 (302)
261 KOG2170 ATPase of the AAA+ sup 98.7 1.7E-07 3.6E-12 90.2 13.2 130 161-312 82-226 (344)
262 cd03230 ABC_DR_subfamily_A Thi 98.7 1.1E-07 2.3E-12 86.0 11.5 111 190-315 21-159 (173)
263 PRK13539 cytochrome c biogenes 98.7 1.3E-07 2.7E-12 88.1 11.6 124 189-335 22-203 (207)
264 cd03217 ABC_FeS_Assembly ABC-t 98.7 1.2E-07 2.7E-12 87.7 11.5 111 190-315 21-168 (200)
265 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.7 1.1E-07 2.4E-12 88.9 11.2 49 252-314 156-204 (218)
266 cd03226 ABC_cobalt_CbiO_domain 98.7 1.4E-07 3E-12 87.6 11.7 111 190-315 21-190 (205)
267 cd03229 ABC_Class3 This class 98.7 1.4E-07 3E-12 85.7 11.4 112 190-315 21-165 (178)
268 TIGR00960 3a0501s02 Type II (G 98.7 1.6E-07 3.4E-12 87.8 12.0 50 251-315 153-202 (216)
269 PRK13536 nodulation factor exp 98.7 1.1E-07 2.4E-12 95.2 11.4 113 189-316 61-237 (340)
270 COG1122 CbiO ABC-type cobalt t 98.7 7E-08 1.5E-12 91.6 9.3 114 189-316 24-204 (235)
271 PRK06921 hypothetical protein; 98.7 1.2E-07 2.7E-12 91.8 11.1 105 194-311 116-225 (266)
272 COG3839 MalK ABC-type sugar tr 98.7 6.6E-08 1.4E-12 95.9 9.2 110 190-313 24-196 (338)
273 PRK11650 ugpC glycerol-3-phosp 98.7 1.1E-07 2.5E-12 95.8 11.1 112 190-315 25-199 (356)
274 COG4555 NatA ABC-type Na+ tran 98.7 1.5E-07 3.3E-12 86.0 10.6 111 190-315 23-197 (245)
275 cd03269 ABC_putative_ATPase Th 98.7 2E-07 4.4E-12 86.7 12.0 51 250-315 142-192 (210)
276 cd03292 ABC_FtsE_transporter F 98.7 1.9E-07 4.2E-12 87.0 11.7 51 250-315 150-200 (214)
277 PRK09452 potA putrescine/sperm 98.7 1.3E-07 2.7E-12 96.1 11.1 113 189-315 34-209 (375)
278 cd03301 ABC_MalK_N The N-termi 98.7 1.7E-07 3.7E-12 87.3 11.2 52 250-315 144-195 (213)
279 cd03293 ABC_NrtD_SsuB_transpor 98.7 2.5E-07 5.3E-12 86.8 12.2 52 250-315 145-196 (220)
280 TIGR03265 PhnT2 putative 2-ami 98.7 1.4E-07 3E-12 95.0 11.0 112 190-315 25-199 (353)
281 cd03262 ABC_HisP_GlnQ_permease 98.7 2.6E-07 5.7E-12 86.0 12.0 49 252-315 151-199 (213)
282 cd03259 ABC_Carb_Solutes_like 98.7 2.2E-07 4.8E-12 86.7 11.4 51 251-315 145-195 (213)
283 cd03215 ABC_Carb_Monos_II This 98.7 2.5E-07 5.4E-12 84.3 11.4 111 190-315 21-168 (182)
284 TIGR02673 FtsE cell division A 98.6 2.6E-07 5.6E-12 86.2 11.8 50 251-315 152-201 (214)
285 cd03225 ABC_cobalt_CbiO_domain 98.6 2.1E-07 4.7E-12 86.5 11.2 50 251-315 149-198 (211)
286 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.6 2.2E-07 4.8E-12 87.6 11.4 112 190-316 43-207 (224)
287 cd03218 ABC_YhbG The ABC trans 98.6 2.6E-07 5.5E-12 87.3 11.8 52 250-316 147-198 (232)
288 PF12775 AAA_7: P-loop contain 98.6 3E-07 6.6E-12 89.3 12.5 141 193-348 31-195 (272)
289 cd03213 ABCG_EPDR ABCG transpo 98.6 3.8E-07 8.2E-12 84.1 12.6 108 190-312 30-172 (194)
290 PRK11607 potG putrescine trans 98.6 1.9E-07 4.1E-12 94.9 11.5 122 189-324 39-228 (377)
291 cd03268 ABC_BcrA_bacitracin_re 98.6 2.5E-07 5.4E-12 86.0 11.4 52 250-316 140-191 (208)
292 cd03266 ABC_NatA_sodium_export 98.6 2.8E-07 6.1E-12 86.2 11.6 50 251-315 151-200 (218)
293 cd03232 ABC_PDR_domain2 The pl 98.6 2.7E-07 6E-12 84.8 11.4 108 190-312 28-169 (192)
294 PRK13406 bchD magnesium chelat 98.6 2.1E-06 4.5E-11 91.6 19.5 194 196-407 26-254 (584)
295 TIGR02314 ABC_MetN D-methionin 98.6 2E-07 4.4E-12 93.5 11.2 53 250-316 154-206 (343)
296 TIGR03410 urea_trans_UrtE urea 98.6 4E-07 8.6E-12 85.9 12.5 52 251-316 146-197 (230)
297 cd03224 ABC_TM1139_LivF_branch 98.6 2.7E-07 5.9E-12 86.5 11.3 48 253-315 149-196 (222)
298 cd03283 ABC_MutS-like MutS-lik 98.6 1.9E-07 4.1E-12 86.6 10.0 113 188-316 18-153 (199)
299 TIGR02211 LolD_lipo_ex lipopro 98.6 3.2E-07 6.9E-12 86.0 11.6 49 252-314 157-205 (221)
300 cd03258 ABC_MetN_methionine_tr 98.6 2.9E-07 6.2E-12 87.1 11.4 51 252-316 156-206 (233)
301 PRK13538 cytochrome c biogenes 98.6 3.4E-07 7.5E-12 84.9 11.7 52 250-316 143-194 (204)
302 cd03265 ABC_DrrA DrrA is the A 98.6 3E-07 6.5E-12 86.2 11.3 53 250-316 145-197 (220)
303 PRK13541 cytochrome c biogenes 98.6 3.9E-07 8.4E-12 84.0 11.8 113 189-316 20-188 (195)
304 cd01120 RecA-like_NTPases RecA 98.6 1.7E-07 3.6E-12 82.2 9.0 112 198-314 2-140 (165)
305 PRK11248 tauB taurine transpor 98.6 3.1E-07 6.7E-12 88.4 11.4 53 250-316 142-194 (255)
306 PRK13546 teichoic acids export 98.6 4.6E-07 1E-11 87.7 12.6 113 189-316 44-208 (264)
307 PRK10908 cell division protein 98.6 4.2E-07 9.1E-12 85.4 11.9 50 252-316 153-202 (222)
308 cd03231 ABC_CcmA_heme_exporter 98.6 4E-07 8.7E-12 84.3 11.6 112 190-316 21-190 (201)
309 TIGR03740 galliderm_ABC gallid 98.6 3.9E-07 8.4E-12 85.7 11.6 52 250-316 138-189 (223)
310 TIGR01288 nodI ATP-binding ABC 98.6 3.2E-07 7E-12 90.5 11.5 52 250-316 149-200 (303)
311 TIGR01186 proV glycine betaine 98.6 3E-07 6.4E-12 92.9 11.3 53 250-316 143-195 (363)
312 TIGR03608 L_ocin_972_ABC putat 98.6 4.3E-07 9.3E-12 84.1 11.6 48 251-313 149-196 (206)
313 PRK13543 cytochrome c biogenes 98.6 4.3E-07 9.4E-12 84.9 11.6 52 250-316 151-202 (214)
314 TIGR03864 PQQ_ABC_ATP ABC tran 98.6 4E-07 8.7E-12 86.4 11.6 52 250-315 146-197 (236)
315 TIGR03258 PhnT 2-aminoethylpho 98.6 2.7E-07 5.9E-12 93.2 10.9 112 190-315 26-203 (362)
316 cd03263 ABC_subfamily_A The AB 98.6 4.7E-07 1E-11 84.8 11.9 50 251-316 148-197 (220)
317 COG4619 ABC-type uncharacteriz 98.6 3.5E-07 7.6E-12 81.3 10.1 124 189-332 23-209 (223)
318 cd03223 ABCD_peroxisomal_ALDP 98.6 6E-07 1.3E-11 80.7 12.0 105 190-312 22-149 (166)
319 TIGR01166 cbiO cobalt transpor 98.6 4.7E-07 1E-11 83.0 11.5 48 251-313 142-189 (190)
320 PRK11629 lolD lipoprotein tran 98.6 4.2E-07 9E-12 86.1 11.4 52 250-315 159-210 (233)
321 TIGR03522 GldA_ABC_ATP gliding 98.6 3.7E-07 8.1E-12 90.0 11.5 111 190-316 23-197 (301)
322 PRK13647 cbiO cobalt transport 98.6 3.5E-07 7.5E-12 89.0 11.1 52 250-316 152-203 (274)
323 COG2274 SunT ABC-type bacterio 98.6 4.3E-07 9.2E-12 98.8 12.9 119 190-331 494-681 (709)
324 PRK11432 fbpC ferric transport 98.6 3.1E-07 6.8E-12 92.4 11.0 122 189-324 26-215 (351)
325 TIGR02237 recomb_radB DNA repa 98.6 3.2E-07 7E-12 85.2 10.2 117 191-311 8-150 (209)
326 COG3840 ThiQ ABC-type thiamine 98.6 4.5E-07 9.6E-12 81.7 10.5 114 189-316 19-195 (231)
327 COG1117 PstB ABC-type phosphat 98.6 6.5E-07 1.4E-11 82.6 11.7 64 245-324 158-226 (253)
328 TIGR01189 ccmA heme ABC export 98.6 5.2E-07 1.1E-11 83.3 11.4 49 251-314 142-190 (198)
329 PRK10365 transcriptional regul 98.6 9.5E-07 2.1E-11 91.3 14.6 187 194-398 161-384 (441)
330 TIGR01184 ntrCD nitrate transp 98.6 4.8E-07 1E-11 85.6 11.4 51 251-315 129-179 (230)
331 PRK11247 ssuB aliphatic sulfon 98.6 4.7E-07 1E-11 87.3 11.3 113 190-316 33-199 (257)
332 cd03235 ABC_Metallic_Cations A 98.6 5.5E-07 1.2E-11 84.0 11.5 50 251-315 147-196 (213)
333 PRK09544 znuC high-affinity zi 98.6 4.4E-07 9.6E-12 87.1 11.1 114 189-316 24-186 (251)
334 cd03261 ABC_Org_Solvent_Resist 98.6 4.7E-07 1E-11 85.8 11.1 51 251-315 151-201 (235)
335 PRK11000 maltose/maltodextrin 98.6 3.7E-07 8E-12 92.6 10.9 53 250-316 147-199 (369)
336 PRK11153 metN DL-methionine tr 98.6 4.6E-07 1E-11 91.0 11.5 53 250-316 154-206 (343)
337 PRK13540 cytochrome c biogenes 98.6 5.9E-07 1.3E-11 83.1 11.3 51 250-315 141-191 (200)
338 PRK13548 hmuV hemin importer A 98.6 4.4E-07 9.5E-12 87.4 10.9 49 254-316 158-206 (258)
339 PRK09536 btuD corrinoid ABC tr 98.6 4.7E-07 1E-11 92.6 11.6 54 248-316 151-204 (402)
340 cd03233 ABC_PDR_domain1 The pl 98.6 5.5E-07 1.2E-11 83.5 11.1 113 190-315 28-184 (202)
341 PRK10851 sulfate/thiosulfate t 98.6 4.7E-07 1E-11 91.2 11.3 53 250-316 150-202 (353)
342 cd03264 ABC_drug_resistance_li 98.6 6.8E-07 1.5E-11 83.2 11.6 50 250-315 144-193 (211)
343 cd03237 ABC_RNaseL_inhibitor_d 98.5 7.2E-07 1.6E-11 85.5 11.9 111 192-316 22-181 (246)
344 PRK10895 lipopolysaccharide AB 98.5 6.8E-07 1.5E-11 85.0 11.7 52 250-316 151-202 (241)
345 PRK09493 glnQ glutamine ABC tr 98.5 7.3E-07 1.6E-11 84.7 11.8 50 252-316 152-201 (240)
346 PRK11124 artP arginine transpo 98.5 7.8E-07 1.7E-11 84.6 11.9 50 252-316 157-206 (242)
347 PRK11614 livF leucine/isoleuci 98.5 6.7E-07 1.4E-11 84.9 11.3 50 252-316 153-202 (237)
348 PRK10771 thiQ thiamine transpo 98.5 6.7E-07 1.5E-11 84.6 11.3 52 251-316 144-195 (232)
349 cd03294 ABC_Pro_Gly_Bertaine T 98.5 6.8E-07 1.5E-11 86.7 11.5 52 250-315 174-225 (269)
350 PF13401 AAA_22: AAA domain; P 98.5 2.4E-07 5.2E-12 79.1 7.4 73 194-266 3-99 (131)
351 PRK11264 putative amino-acid A 98.5 8.2E-07 1.8E-11 84.9 11.9 50 252-316 160-209 (250)
352 cd03295 ABC_OpuCA_Osmoprotecti 98.5 6.3E-07 1.4E-11 85.4 11.0 52 251-316 150-201 (242)
353 PF05729 NACHT: NACHT domain 98.5 2.2E-06 4.7E-11 75.6 13.6 139 197-347 2-164 (166)
354 COG4525 TauB ABC-type taurine 98.5 9.6E-07 2.1E-11 80.4 11.2 110 189-312 25-194 (259)
355 cd03267 ABC_NatA_like Similar 98.5 8.4E-07 1.8E-11 84.3 11.6 52 250-315 167-218 (236)
356 PRK13638 cbiO cobalt transport 98.5 7.9E-07 1.7E-11 86.2 11.5 51 251-316 151-201 (271)
357 PRK13635 cbiO cobalt transport 98.5 6.9E-07 1.5E-11 87.2 11.1 52 250-315 154-205 (279)
358 PRK13650 cbiO cobalt transport 98.5 6.4E-07 1.4E-11 87.3 10.7 51 250-314 154-204 (279)
359 PRK10584 putative ABC transpor 98.5 8.6E-07 1.9E-11 83.6 11.2 49 252-314 162-210 (228)
360 COG4608 AppF ABC-type oligopep 98.5 3.9E-07 8.4E-12 87.1 8.7 112 189-314 33-173 (268)
361 TIGR01277 thiQ thiamine ABC tr 98.5 9E-07 1.9E-11 82.6 11.2 50 252-315 144-193 (213)
362 KOG1970 Checkpoint RAD17-RFC c 98.5 3E-06 6.4E-11 87.5 15.6 214 149-383 70-320 (634)
363 PRK13644 cbiO cobalt transport 98.5 7.6E-07 1.6E-11 86.6 10.9 50 250-314 150-199 (274)
364 cd03298 ABC_ThiQ_thiamine_tran 98.5 1E-06 2.2E-11 82.0 11.4 52 251-316 143-194 (211)
365 PRK14250 phosphate ABC transpo 98.5 1E-06 2.2E-11 83.9 11.4 53 250-316 145-197 (241)
366 PRK13643 cbiO cobalt transport 98.5 1.1E-06 2.3E-11 86.2 11.7 51 251-316 159-209 (288)
367 PRK13648 cbiO cobalt transport 98.5 9.8E-07 2.1E-11 85.5 11.4 51 251-315 157-207 (269)
368 cd03296 ABC_CysA_sulfate_impor 98.5 9.2E-07 2E-11 84.1 11.0 50 252-315 152-201 (239)
369 TIGR00968 3a0106s01 sulfate AB 98.5 9.6E-07 2.1E-11 83.9 11.0 50 253-316 147-196 (237)
370 TIGR03005 ectoine_ehuA ectoine 98.5 1.2E-06 2.5E-11 84.1 11.7 51 252-316 162-212 (252)
371 PRK10619 histidine/lysine/argi 98.5 1.2E-06 2.5E-11 84.4 11.7 51 251-316 167-217 (257)
372 cd03297 ABC_ModC_molybdenum_tr 98.5 1E-06 2.2E-11 82.2 11.0 51 251-315 146-196 (214)
373 PRK13652 cbiO cobalt transport 98.5 1E-06 2.2E-11 85.8 11.3 53 250-316 151-203 (277)
374 PRK11144 modC molybdate transp 98.5 9.2E-07 2E-11 89.2 11.4 114 189-316 18-194 (352)
375 TIGR03771 anch_rpt_ABC anchore 98.5 1.4E-06 3.1E-11 82.0 12.0 51 251-316 128-178 (223)
376 TIGR02315 ABC_phnC phosphonate 98.5 1.3E-06 2.8E-11 83.1 11.7 50 252-315 161-210 (243)
377 PLN03210 Resistant to P. syrin 98.5 1.7E-06 3.6E-11 99.9 14.8 178 155-368 178-389 (1153)
378 PRK03695 vitamin B12-transport 98.5 1.1E-06 2.3E-11 84.3 11.0 48 254-316 151-198 (248)
379 PRK05917 DNA polymerase III su 98.5 1.6E-06 3.6E-11 84.5 12.4 119 193-334 17-155 (290)
380 PRK13639 cbiO cobalt transport 98.5 1.2E-06 2.7E-11 85.1 11.7 52 250-316 151-202 (275)
381 PRK11831 putative ABC transpor 98.5 1.2E-06 2.6E-11 84.9 11.5 53 250-316 157-209 (269)
382 cd03243 ABC_MutS_homologs The 98.5 1.1E-06 2.3E-11 81.5 10.6 112 190-316 24-156 (202)
383 PRK11022 dppD dipeptide transp 98.5 1E-06 2.3E-11 87.8 11.2 52 251-316 168-219 (326)
384 PRK13632 cbiO cobalt transport 98.5 1.1E-06 2.4E-11 85.3 11.1 51 251-315 157-207 (271)
385 cd03254 ABCC_Glucan_exporter_l 98.5 1.5E-06 3.3E-11 81.8 11.7 49 250-314 153-201 (229)
386 cd03256 ABC_PhnC_transporter A 98.5 1.5E-06 3.2E-11 82.6 11.6 51 252-316 160-210 (241)
387 PRK13646 cbiO cobalt transport 98.5 1.4E-06 2.9E-11 85.4 11.7 51 252-316 161-211 (286)
388 cd03280 ABC_MutS2 MutS2 homolo 98.5 1.1E-06 2.4E-11 81.4 10.5 108 190-312 22-152 (200)
389 TIGR02142 modC_ABC molybdenum 98.5 1.2E-06 2.7E-11 88.3 11.6 53 250-316 145-197 (354)
390 cd03252 ABCC_Hemolysin The ABC 98.5 1.6E-06 3.6E-11 82.1 11.8 51 249-315 151-201 (237)
391 cd03250 ABCC_MRP_domain1 Domai 98.5 1.7E-06 3.7E-11 80.1 11.6 111 190-315 26-192 (204)
392 COG1123 ATPase components of v 98.5 8.1E-07 1.8E-11 92.7 10.3 121 190-324 312-508 (539)
393 PRK10575 iron-hydroxamate tran 98.5 1.2E-06 2.5E-11 84.8 10.9 53 250-316 161-213 (265)
394 PRK13547 hmuV hemin importer A 98.5 1E-06 2.3E-11 85.6 10.6 48 254-315 172-219 (272)
395 PRK10247 putative ABC transpor 98.5 1.8E-06 3.8E-11 81.5 11.8 60 250-330 151-210 (225)
396 PF12774 AAA_6: Hydrolytic ATP 98.5 4.1E-06 8.9E-11 79.4 14.3 126 195-342 32-176 (231)
397 COG4586 ABC-type uncharacteriz 98.5 1.3E-06 2.8E-11 83.3 10.6 113 189-315 44-221 (325)
398 PRK10070 glycine betaine trans 98.4 1.2E-06 2.6E-11 89.6 11.2 51 251-315 179-229 (400)
399 cd03219 ABC_Mj1267_LivG_branch 98.4 1.6E-06 3.5E-11 82.0 11.4 50 252-316 159-208 (236)
400 PRK11308 dppF dipeptide transp 98.4 1.2E-06 2.6E-11 87.4 11.0 53 250-316 168-220 (327)
401 PRK13645 cbiO cobalt transport 98.4 1.4E-06 3.1E-11 85.3 11.3 51 252-316 166-216 (289)
402 cd03300 ABC_PotA_N PotA is an 98.4 1.6E-06 3.5E-11 82.0 11.3 53 250-316 144-196 (232)
403 PRK13649 cbiO cobalt transport 98.4 1.5E-06 3.2E-11 84.7 11.3 51 251-316 160-210 (280)
404 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.4 2.1E-06 4.6E-11 81.4 12.1 51 249-315 152-202 (238)
405 PF00931 NB-ARC: NB-ARC domain 98.4 6.4E-06 1.4E-10 79.9 15.6 173 167-375 2-202 (287)
406 TIGR01978 sufC FeS assembly AT 98.4 1.7E-06 3.6E-11 82.3 11.2 50 252-316 160-209 (243)
407 COG1135 AbcC ABC-type metal io 98.4 1.1E-06 2.4E-11 85.2 9.9 141 189-343 26-243 (339)
408 cd03253 ABCC_ATM1_transporter 98.4 2.2E-06 4.7E-11 81.2 11.9 52 248-315 149-200 (236)
409 COG4618 ArpD ABC-type protease 98.4 1.2E-06 2.7E-11 89.6 10.7 110 191-315 358-536 (580)
410 cd03244 ABCC_MRP_domain2 Domai 98.4 2.3E-06 4.9E-11 80.2 11.9 51 249-315 152-202 (221)
411 PRK08533 flagellar accessory p 98.4 2.4E-06 5.3E-11 81.0 12.2 110 191-311 20-163 (230)
412 PRK11231 fecE iron-dicitrate t 98.4 2E-06 4.4E-11 82.6 11.8 52 250-316 152-203 (255)
413 PRK13636 cbiO cobalt transport 98.4 1.6E-06 3.5E-11 84.7 11.3 53 250-316 155-207 (283)
414 cd03257 ABC_NikE_OppD_transpor 98.4 1.8E-06 3.9E-11 81.2 11.2 49 253-315 162-210 (228)
415 cd03260 ABC_PstB_phosphate_tra 98.4 2.2E-06 4.7E-11 80.7 11.7 47 253-315 158-204 (227)
416 cd03245 ABCC_bacteriocin_expor 98.4 2.2E-06 4.8E-11 80.3 11.6 50 249-314 153-202 (220)
417 PRK13637 cbiO cobalt transport 98.4 1.7E-06 3.7E-11 84.7 11.2 53 250-316 158-210 (287)
418 TIGR02770 nickel_nikD nickel i 98.4 1.9E-06 4.2E-11 81.4 11.2 51 252-316 141-191 (230)
419 TIGR03873 F420-0_ABC_ATP propo 98.4 1.8E-06 3.9E-11 83.0 11.2 50 252-316 153-202 (256)
420 PRK13633 cobalt transporter AT 98.4 1.6E-06 3.5E-11 84.5 10.9 50 252-315 160-209 (280)
421 PRK13651 cobalt transporter AT 98.4 1.9E-06 4.2E-11 85.1 11.6 52 250-316 179-230 (305)
422 PRK11174 cysteine/glutathione 98.4 2.1E-06 4.5E-11 92.3 12.7 120 189-331 370-557 (588)
423 PRK13641 cbiO cobalt transport 98.4 2.1E-06 4.6E-11 84.0 11.7 51 251-316 160-210 (287)
424 PRK13545 tagH teichoic acids e 98.4 1.6E-06 3.5E-11 90.8 11.3 113 189-316 44-208 (549)
425 cd03251 ABCC_MsbA MsbA is an e 98.4 2.8E-06 6E-11 80.3 12.1 50 250-315 152-201 (234)
426 cd03369 ABCC_NFT1 Domain 2 of 98.4 3.2E-06 6.9E-11 78.5 12.3 109 190-314 29-187 (207)
427 TIGR02324 CP_lyasePhnL phospho 98.4 3.9E-06 8.4E-11 78.9 13.0 48 252-314 165-212 (224)
428 PRK14247 phosphate ABC transpo 98.4 2.5E-06 5.4E-11 81.6 11.9 49 252-316 162-210 (250)
429 PRK10253 iron-enterobactin tra 98.4 1.9E-06 4.1E-11 83.3 11.1 53 250-316 157-209 (265)
430 TIGR02858 spore_III_AA stage I 98.4 2.6E-06 5.6E-11 82.6 12.0 114 196-331 112-256 (270)
431 PRK15056 manganese/iron transp 98.4 2.4E-06 5.3E-11 82.9 11.9 51 251-316 157-207 (272)
432 COG1119 ModF ABC-type molybden 98.4 2.7E-06 5.8E-11 80.1 11.6 64 244-320 179-242 (257)
433 PRK11176 lipid transporter ATP 98.4 2.2E-06 4.8E-11 91.9 12.7 119 190-331 364-552 (582)
434 COG4181 Predicted ABC-type tra 98.4 2.5E-06 5.4E-11 76.2 10.5 120 191-331 32-220 (228)
435 PRK11300 livG leucine/isoleuci 98.4 2.5E-06 5.3E-11 81.8 11.4 51 252-316 169-219 (255)
436 PRK10418 nikD nickel transport 98.4 2.5E-06 5.5E-11 81.9 11.5 52 250-315 154-205 (254)
437 cd01124 KaiC KaiC is a circadi 98.4 2.5E-06 5.5E-11 77.4 10.9 104 198-313 2-142 (187)
438 PF03969 AFG1_ATPase: AFG1-lik 98.4 1.2E-06 2.7E-11 88.3 9.5 103 192-311 59-168 (362)
439 PRK15112 antimicrobial peptide 98.4 2.8E-06 6.2E-11 82.2 11.7 51 251-315 164-214 (267)
440 PRK13640 cbiO cobalt transport 98.4 2.5E-06 5.4E-11 83.4 11.3 50 251-314 158-207 (282)
441 PRK09473 oppD oligopeptide tra 98.4 2E-06 4.4E-11 85.9 11.0 52 250-315 175-226 (330)
442 PRK13634 cbiO cobalt transport 98.4 2.8E-06 6E-11 83.4 11.7 51 252-316 161-211 (290)
443 cd03299 ABC_ModC_like Archeal 98.4 2.7E-06 5.8E-11 80.8 11.2 53 250-316 143-195 (235)
444 TIGR03411 urea_trans_UrtD urea 98.4 3.2E-06 7E-11 80.4 11.8 50 251-316 158-207 (242)
445 cd03248 ABCC_TAP TAP, the Tran 98.4 3.4E-06 7.4E-11 79.3 11.9 48 251-314 165-212 (226)
446 TIGR00972 3a0107s01c2 phosphat 98.4 2.9E-06 6.3E-11 81.0 11.5 49 252-316 160-208 (247)
447 PRK15079 oligopeptide ABC tran 98.4 2.1E-06 4.5E-11 85.8 10.9 53 250-316 175-227 (331)
448 PRK13631 cbiO cobalt transport 98.4 2.7E-06 5.8E-11 84.7 11.6 52 250-316 190-241 (320)
449 TIGR02868 CydC thiol reductant 98.4 2.6E-06 5.6E-11 90.4 12.1 106 190-311 356-529 (529)
450 PRK15439 autoinducer 2 ABC tra 98.4 2.1E-06 4.4E-11 90.8 11.3 112 190-316 32-205 (510)
451 PRK13657 cyclic beta-1,2-gluca 98.4 2.9E-06 6.2E-11 91.2 12.6 118 190-330 356-542 (588)
452 TIGR02769 nickel_nikE nickel i 98.4 2.8E-06 6E-11 82.2 11.3 52 251-316 165-216 (265)
453 cd03234 ABCG_White The White s 98.4 3.5E-06 7.6E-11 79.4 11.7 46 251-311 158-203 (226)
454 PRK10790 putative multidrug tr 98.4 2.9E-06 6.2E-11 91.3 12.5 118 190-330 362-547 (592)
455 PRK10419 nikE nickel transport 98.4 3.2E-06 6.9E-11 81.9 11.6 53 250-316 165-217 (268)
456 PRK13642 cbiO cobalt transport 98.4 2.6E-06 5.7E-11 82.9 11.0 52 250-315 154-205 (277)
457 PRK14273 phosphate ABC transpo 98.4 3.9E-06 8.4E-11 80.5 12.0 48 253-316 167-214 (254)
458 PRK15177 Vi polysaccharide exp 98.4 6.6E-06 1.4E-10 77.0 13.2 29 190-218 8-36 (213)
459 PRK15093 antimicrobial peptide 98.4 3E-06 6.6E-11 84.6 11.3 59 252-324 174-237 (330)
460 PRK14242 phosphate transporter 98.3 3.8E-06 8.2E-11 80.5 11.4 49 252-316 165-213 (253)
461 PRK14253 phosphate ABC transpo 98.3 4.8E-06 1E-10 79.6 12.1 49 252-316 161-209 (249)
462 TIGR02323 CP_lyasePhnK phospho 98.3 4.3E-06 9.3E-11 80.1 11.8 52 251-316 163-214 (253)
463 TIGR03796 NHPM_micro_ABC1 NHPM 98.3 3.8E-06 8.3E-11 92.3 12.9 116 190-330 500-684 (710)
464 PRK09580 sufC cysteine desulfu 98.3 3.9E-06 8.4E-11 80.1 11.4 52 250-316 159-210 (248)
465 PRK10762 D-ribose transporter 98.3 2.8E-06 6.2E-11 89.6 11.4 52 250-316 155-206 (501)
466 cd03289 ABCC_CFTR2 The CFTR su 98.3 4.3E-06 9.2E-11 81.5 11.7 110 190-315 25-201 (275)
467 PRK14256 phosphate ABC transpo 98.3 4E-06 8.6E-11 80.3 11.4 48 253-316 165-212 (252)
468 COG1618 Predicted nucleotide k 98.3 7.6E-06 1.6E-10 72.4 11.9 27 193-219 3-29 (179)
469 TIGR02857 CydD thiol reductant 98.3 4.3E-06 9.4E-11 88.7 12.7 117 190-329 343-528 (529)
470 PRK14262 phosphate ABC transpo 98.3 5E-06 1.1E-10 79.5 12.0 49 252-316 162-210 (250)
471 TIGR03375 type_I_sec_LssB type 98.3 4.2E-06 9.1E-11 91.7 12.9 118 190-330 486-672 (694)
472 TIGR03415 ABC_choXWV_ATP choli 98.3 3.3E-06 7.1E-11 85.9 11.1 52 250-315 178-229 (382)
473 PRK11823 DNA repair protein Ra 98.3 3.4E-06 7.4E-11 87.6 11.5 114 191-309 76-206 (446)
474 PRK09361 radB DNA repair and r 98.3 2.9E-06 6.3E-11 79.8 10.0 119 191-312 19-163 (225)
475 TIGR02012 tigrfam_recA protein 98.3 3.6E-06 7.7E-11 83.4 11.0 121 191-311 51-192 (321)
476 PRK14259 phosphate ABC transpo 98.3 5.1E-06 1.1E-10 80.6 11.9 48 252-315 170-217 (269)
477 TIGR03797 NHPM_micro_ABC2 NHPM 98.3 4.3E-06 9.2E-11 91.6 12.7 108 189-314 473-648 (686)
478 PRK10744 pstB phosphate transp 98.3 5.1E-06 1.1E-10 80.1 11.9 49 252-316 172-220 (260)
479 COG4178 ABC-type uncharacteriz 98.3 3.6E-06 7.9E-11 89.0 11.6 109 189-313 413-576 (604)
480 PRK14251 phosphate ABC transpo 98.3 5.2E-06 1.1E-10 79.5 11.8 49 252-316 163-211 (251)
481 TIGR01192 chvA glucan exporter 98.3 4.4E-06 9.6E-11 89.8 12.5 118 190-330 356-542 (585)
482 PRK13549 xylose transporter AT 98.3 3.2E-06 6.9E-11 89.3 11.2 52 250-316 157-208 (506)
483 PRK11701 phnK phosphonate C-P 98.3 5E-06 1.1E-10 80.0 11.6 51 252-316 167-217 (258)
484 PRK10982 galactose/methyl gala 98.3 4.2E-06 9.2E-11 88.0 12.0 51 250-315 405-455 (491)
485 PRK14274 phosphate ABC transpo 98.3 5.4E-06 1.2E-10 79.8 11.8 48 253-316 172-219 (259)
486 TIGR02982 heterocyst_DevA ABC 98.3 5.3E-06 1.1E-10 77.8 11.4 47 252-312 157-203 (220)
487 cd00983 recA RecA is a bacter 98.3 3.6E-06 7.9E-11 83.4 10.7 120 191-310 51-191 (325)
488 cd01121 Sms Sms (bacterial rad 98.3 4E-06 8.7E-11 84.9 11.3 115 191-310 78-209 (372)
489 PRK14241 phosphate transporter 98.3 5.2E-06 1.1E-10 79.8 11.6 48 253-316 165-212 (258)
490 PRK14263 phosphate ABC transpo 98.3 5.7E-06 1.2E-10 79.9 11.9 49 252-316 165-213 (261)
491 PRK14240 phosphate transporter 98.3 5.5E-06 1.2E-10 79.2 11.6 49 252-316 162-210 (250)
492 TIGR01257 rim_protein retinal- 98.3 3E-06 6.6E-11 101.0 11.7 111 190-315 1960-2134(2272)
493 PRK14237 phosphate transporter 98.3 5.8E-06 1.3E-10 80.1 11.8 49 252-316 179-227 (267)
494 TIGR01618 phage_P_loop phage n 98.3 1.4E-06 2.9E-11 81.9 7.1 111 195-311 12-143 (220)
495 PRK14236 phosphate transporter 98.3 5.5E-06 1.2E-10 80.4 11.7 49 252-316 184-232 (272)
496 cd01394 radB RadB. The archaea 98.3 3.6E-06 7.8E-11 78.7 10.0 141 191-334 15-188 (218)
497 cd03290 ABCC_SUR1_N The SUR do 98.3 6.5E-06 1.4E-10 77.1 11.7 49 251-314 155-205 (218)
498 PRK14268 phosphate ABC transpo 98.3 6.3E-06 1.4E-10 79.3 11.8 49 252-316 170-218 (258)
499 PRK07276 DNA polymerase III su 98.3 2.4E-05 5.3E-10 76.5 15.9 144 165-343 6-172 (290)
500 PRK14243 phosphate transporter 98.3 6.7E-06 1.5E-10 79.5 12.1 49 252-316 167-215 (264)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-87 Score=641.85 Aligned_cols=356 Identities=62% Similarity=0.961 Sum_probs=345.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCCccccccCCCCCeeeecCCc
Q 014743 53 NLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDS 132 (419)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (419)
+...+..+...++.+++.++++++.++..|.++|++.+.++++.++++++++++|++++.+.++.+.|+||++|+++..+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s 122 (406)
T COG1222 43 EEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDS 122 (406)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCceEEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCc
Confidence 45556666667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHH
Q 014743 133 YVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~La 212 (419)
+.+..++|++.||.++.|.+++.|+++|+||||+++|+++|+++|++||+||++|..+|+.||+|||||||||||||+||
T Consensus 123 ~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 123 YSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred ceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHH
Q 014743 213 RAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ 292 (419)
Q Consensus 213 kalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~ 292 (419)
||+|++.++.|+++.+|+|+++|+|++.+.+|++|+.|+.++||||||||||+++.+|.+++ ++++.+++++|+|||++
T Consensus 203 kAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~-t~gDrEVQRTmleLL~q 281 (406)
T COG1222 203 KAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG-TSGDREVQRTMLELLNQ 281 (406)
T ss_pred HHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCC-CCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999865 45889999999999999
Q ss_pred ccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHH
Q 014743 293 LDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAEL 372 (419)
Q Consensus 293 l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi 372 (419)
||||+..++|.||||||+++.|||||+||||||+.|+||+||.+.|.+||++|++++++..++||+.||..|+|+|||||
T Consensus 282 lDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdl 361 (406)
T COG1222 282 LDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADL 361 (406)
T ss_pred ccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhc
Q 014743 373 KAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 409 (419)
Q Consensus 373 ~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~~ 409 (419)
+++|.+|++.|+|+++..||++||..|+++|.....+
T Consensus 362 kaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~~ 398 (406)
T COG1222 362 KAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKKK 398 (406)
T ss_pred HHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999986543
No 2
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-83 Score=587.97 Aligned_cols=401 Identities=86% Similarity=1.280 Sum_probs=388.1
Q ss_pred hHhhhhc-cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhccc
Q 014743 18 EVCAAKG-ASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNK 96 (419)
Q Consensus 18 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (419)
+.|..++ +..++..+..||..++.+++.++.+..+++.++.++.++++.+++.+++++..++.+..++|.+...+++..
T Consensus 3 ~~~~~~~~~~~~~e~~~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k~k 82 (404)
T KOG0728|consen 3 ETCPMKLIAAKSGEGLRQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGKKK 82 (404)
T ss_pred CcCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCcce
Confidence 3444443 334566788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccCCCeeEEecCCccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHH
Q 014743 97 VLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEV 176 (419)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~ 176 (419)
++++....++|++.++..++.++++++.+|++++++|.++.++|++.||++++|-++++|+.+|+.|||++.++++|++.
T Consensus 83 VLVKvhpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEV 162 (404)
T KOG0728|consen 83 VLVKVHPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEV 162 (404)
T ss_pred EEEEEcCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCc
Q 014743 177 IELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 256 (419)
Q Consensus 177 i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~ps 256 (419)
|++|.+||++|+.+|+..|+|+|||||||||||+||+++|++..|.|+++++++++++|+|++.+.++++|-.||.++||
T Consensus 163 IeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehaps 242 (404)
T KOG0728|consen 163 IELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 242 (404)
T ss_pred HhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHH
Q 014743 257 IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEE 336 (419)
Q Consensus 257 Vl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~ 336 (419)
|||+||||++++.|.+++ ++++++++++++++|+++|||+...|+.||++||+.+.+||+++||||+|+.|+||+|+.+
T Consensus 243 iifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ 321 (404)
T KOG0728|consen 243 IIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 321 (404)
T ss_pred eEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHH
Confidence 999999999999998754 4589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhcchhhhHh
Q 014743 337 SRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRK 416 (419)
Q Consensus 337 ~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~~~~~~~~~ 416 (419)
.|.+||++|.+++++...+|+..+|+.+.|.||++++.+|.+|+++|+|+++.+||++||+.|..+++.++++.+.++++
T Consensus 322 ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k~~e~nms~~k 401 (404)
T KOG0728|consen 322 ARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 401 (404)
T ss_pred HHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhC
Q 014743 417 LWK 419 (419)
Q Consensus 417 ~~~ 419 (419)
+|+
T Consensus 402 l~k 404 (404)
T KOG0728|consen 402 LWK 404 (404)
T ss_pred hhC
Confidence 996
No 3
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-70 Score=504.85 Aligned_cols=369 Identities=44% Similarity=0.749 Sum_probs=358.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCCcccc
Q 014743 38 QHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDI 117 (419)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (419)
-++++++.+++-+.-+-+....++.+++.+....++++..+++.|..+|++++.++.+.+++.+.+++.||+.+.+.+|.
T Consensus 32 ~r~k~le~~le~l~vqe~yik~e~~~lkre~~~aqeevkriqsvplvigqfle~vdqnt~ivgsttgsny~vrilstidr 111 (408)
T KOG0727|consen 32 VRYKKLERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQSVPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDR 111 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhhccCceeecccCCceEEeehhhhhH
Confidence 46788999999998888899999999999999999999999999999999999999999999899999999999999999
Q ss_pred ccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCe
Q 014743 118 TKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKG 197 (419)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~ 197 (419)
+.++|+++|+++..+..+..++|.+.|..++++...+.|+++|.||||++-++++|++++++||.|.++|++.|+.||+|
T Consensus 112 ellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprg 191 (408)
T KOG0727|consen 112 ELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRG 191 (408)
T ss_pred HHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCC
Q 014743 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 277 (419)
Q Consensus 198 iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~ 277 (419)
+|+|||||||||+|+|++|+...+.|+++.+|+|+.+|.|++.+.++.+|..|+.++|+||||||||+++.+|.+. .++
T Consensus 192 vllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfda-qtg 270 (408)
T KOG0727|consen 192 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDA-QTG 270 (408)
T ss_pred eEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875 466
Q ss_pred CCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCH
Q 014743 278 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDL 357 (419)
Q Consensus 278 ~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl 357 (419)
++.++++++.++|++||||+...||.|||+||+.+.+||+++||||+|+.|+||.|+..+++-+|...+.++++.+++|+
T Consensus 271 adrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdl 350 (408)
T KOG0727|consen 271 ADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDL 350 (408)
T ss_pred ccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 014743 358 KKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 358 ~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~ 407 (419)
+.+..+-+..||+||.++|++|++.|.|+++..|.+.||+.|+..+.++.
T Consensus 351 e~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 351 EDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred HHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999998766
No 4
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-71 Score=515.44 Aligned_cols=376 Identities=47% Similarity=0.786 Sum_probs=349.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCee
Q 014743 28 QGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKY 107 (419)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (419)
..|.++.+..+|++....--++...+.+.+. ...++.+..+..++.++..|..+|++.+.++++++++.+..++.|
T Consensus 56 ~~C~lrlLk~~RIkDyLLMEEEFI~NQe~~k----~~e~~~ee~r~~vd~lRGtPmsvg~leEiidd~haivst~~g~e~ 131 (440)
T KOG0726|consen 56 TQCKLKLLKLERIKDYLLMEEEFIRNQERLK----PQEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEY 131 (440)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccC----CchhhhHHHHhHHHhhcCCccccccHHHHhcCCceEEecccCchh
Confidence 3489998888888876554444443333222 222334445578999999999999999999999999988899999
Q ss_pred EEecCCccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHH
Q 014743 108 VVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELF 187 (419)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~ 187 (419)
|+++.+.||.+.+.||+.|.+++....+..++..+.||.++.|++++.|..+|.||||+++++++|++++++||.||++|
T Consensus 132 Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~Y 211 (440)
T KOG0726|consen 132 YVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYY 211 (440)
T ss_pred eeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEeccccccc
Q 014743 188 ESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG 267 (419)
Q Consensus 188 ~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~ 267 (419)
..+|+.||+|++|||+||||||+||||+|+...+.|+++-+|+++++|.|++.+.+|++|..|..++|||+||||||+++
T Consensus 212 eemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiG 291 (440)
T KOG0726|consen 212 EEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIG 291 (440)
T ss_pred HHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHh
Q 014743 268 SARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR 347 (419)
Q Consensus 268 ~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~ 347 (419)
.+|.++. +++..+++++++++|+++|||++++.|.|||+||+.+.|||+|+||||+|+.|+||.||...++.||.+|+.
T Consensus 292 tKRyds~-SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs 370 (440)
T KOG0726|consen 292 TKRYDSN-SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS 370 (440)
T ss_pred cccccCC-CccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeec
Confidence 9999864 557789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhh
Q 014743 348 RMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 408 (419)
Q Consensus 348 ~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~ 408 (419)
++.+..+++++.+...-+.+|||||+++|.+|++.|+|+++..|+++||..|.++|+.+..
T Consensus 371 ~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K~ 431 (440)
T KOG0726|consen 371 RMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKKK 431 (440)
T ss_pred ccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999998764
No 5
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-66 Score=475.99 Aligned_cols=373 Identities=44% Similarity=0.769 Sum_probs=348.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhh-------cc--------------
Q 014743 37 LQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMG-------KN-------------- 95 (419)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-------------- 95 (419)
+.+.+-+..++.-++++..++.-..+..+++++.-.+++.--+..|..|+.+.+.++ ++
T Consensus 26 ~~rtrlldnEirI~~sev~ri~he~~~~~ekIkeN~EkIk~Nk~LPYLV~NvvE~ld~~~~~~~e~sg~n~~ld~qrkgk 105 (424)
T KOG0652|consen 26 ISRTRLLDNEIRIMKSEVQRINHELQAMKEKIKENTEKIKVNKQLPYLVSNVVELLDMDPNDDEEDSGANIDLDSQRKGK 105 (424)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhhccccCchHHhhHHHHhcCCcccchhccCCcccccccccce
Confidence 344555667777788888888888888888888888888888889999999999887 11
Q ss_pred cchhhccCCCeeEEecCCccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHH
Q 014743 96 KVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKE 175 (419)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~ 175 (419)
-++++++++..|++++-..||.++++||+-|.++.++|.+...+|++.|.++..|.+++.|+.+|.||||++.+|+++.+
T Consensus 106 caViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvE 185 (424)
T KOG0652|consen 106 CAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVE 185 (424)
T ss_pred eEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHH
Confidence 12567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCC
Q 014743 176 VIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP 255 (419)
Q Consensus 176 ~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~p 255 (419)
+|.+|+.|++.|.++|+.||+|+|+|||||||||++||+.|.+.+..|+.+.++++++.|+|++.+.+|..|..|+..+|
T Consensus 186 AiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP 265 (424)
T KOG0652|consen 186 AIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAP 265 (424)
T ss_pred HhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCH
Q 014743 256 SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNE 335 (419)
Q Consensus 256 sVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~ 335 (419)
+||||||+|+|+.+|.++. ..++.+++++|+++|+++|||.+...+.||++||+.+.+||+|+|+||+|+.|+||.|+.
T Consensus 266 ~IIFIDElDAIGtKRfDSe-k~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne 344 (424)
T KOG0652|consen 266 TIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 344 (424)
T ss_pred eEEEEechhhhcccccccc-ccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCCh
Confidence 9999999999999998764 457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhcc
Q 014743 336 ESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK 410 (419)
Q Consensus 336 ~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~~~ 410 (419)
+.|..|+++|.++++..++++|++||..|++|+|++.+++|-+|+|.|+|+....|+.+||.+++.+|..+...+
T Consensus 345 ~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakKka~ 419 (424)
T KOG0652|consen 345 EARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKKKAS 419 (424)
T ss_pred HHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998766543
No 6
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-65 Score=474.37 Aligned_cols=374 Identities=49% Similarity=0.789 Sum_probs=337.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcc----cchhhccCC
Q 014743 34 QYYLQHIHELQLQVRQKTHNLNRLEAQRN-----ELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPE 104 (419)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 104 (419)
.+|...+++.+.+++.+.++++.+....+ .--..|+..-....-..+.|..|+.....++.+ .++++...-
T Consensus 41 ~pya~~ik~~e~di~~l~~ki~~~~gikesdtglapp~~wdl~~dkq~mq~eqplqvarctkii~~~~~d~~yvin~kqi 120 (435)
T KOG0729|consen 41 GPYAAQIKKVEADIEDLLKKINELTGIKESDTGLAPPALWDLAADKQRMQEEQPLQVARCTKIISGNSEDPKYVINVKQI 120 (435)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhCccccccCCCChHHHHHhhhHHHhcccCCceeheeeeecCCCCCCcceeeeHHHH
Confidence 56778889999999999888877753221 011334433333333345667777776666543 345555566
Q ss_pred CeeEEecCCccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCCh
Q 014743 105 GKYVVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 184 (419)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~ 184 (419)
.+|++.+...|...+|++|.+|.+....|.++..+|.++||.+++|.+++.|+++|.||||..++++.|++.++.|+.||
T Consensus 121 akfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~p 200 (435)
T KOG0729|consen 121 AKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHP 200 (435)
T ss_pred HHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccc
Q 014743 185 ELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 264 (419)
Q Consensus 185 ~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD 264 (419)
+.|-++|+.||+|+|+|||||||||++|||+|+..++.|+++-+|+++++|+|++.+.++++|++|+...-|||||||||
T Consensus 201 erfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 201 ERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHH
Q 014743 265 SIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKI 344 (419)
Q Consensus 265 ~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~ 344 (419)
++++.|.+++ .+++.+++++|+++++++|+|+.++|+.|+++||+|+.|||+|+||||+|+.++|.+|+-+.|..||++
T Consensus 281 aiggarfddg-~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~ki 359 (435)
T KOG0729|consen 281 AIGGARFDDG-AGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKI 359 (435)
T ss_pred cccCccccCC-CCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEE
Confidence 9999998865 457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhh
Q 014743 345 HSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 408 (419)
Q Consensus 345 ~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~ 408 (419)
|.+.+.+..++-|+.||..+..-+|++|+++|.+|+|+|++.++...|..||..|+.+|.+.++
T Consensus 360 haksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvvkgy~ 423 (435)
T KOG0729|consen 360 HAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYA 423 (435)
T ss_pred eccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998654
No 7
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1e-61 Score=491.13 Aligned_cols=373 Identities=44% Similarity=0.735 Sum_probs=353.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCC
Q 014743 34 QYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDK 113 (419)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (419)
..+.+++++++.++..++.+...+..+++.++++++.++++++.++.+|..+|++.+.++++..+++..+++.|++.+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 97 (398)
T PTZ00454 18 RDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDSNYGIVSSTSGSNYYVRILS 97 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcCCEEEEEcCCCCEEEEeccc
Confidence 34456677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCC
Q 014743 114 SIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIA 193 (419)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~ 193 (419)
.++...++||++|+++..+..+..++|...++.+..+.+.+.|+++|+||||++.++++|+++|.+|+.+|++|.++|+.
T Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~ 177 (398)
T PTZ00454 98 TLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID 177 (398)
T ss_pred ccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCC
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 273 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~ 273 (419)
+|+++|||||||||||++|+++|++++.+|+.+.++++..+|+|+++..++++|..|+.+.|+||||||+|.++++|.+.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~ 257 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA 257 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888543
Q ss_pred CCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCC
Q 014743 274 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMR 353 (419)
Q Consensus 274 ~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~ 353 (419)
.++.+..+++.+.+++..++++....+++||+|||+++.+||+++||||||+.|+|++|+.++|..||+.++.++++..
T Consensus 258 -~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~ 336 (398)
T PTZ00454 258 -QTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE 336 (398)
T ss_pred -cCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc
Confidence 2345678889999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 014743 354 GIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 354 ~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~ 407 (419)
++|+..+|..|+||||+||.++|++|++.|+++++..|+++||+.|+.++..+.
T Consensus 337 dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 337 EVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKT 390 (398)
T ss_pred ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999998764
No 8
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=8.6e-60 Score=480.26 Aligned_cols=366 Identities=48% Similarity=0.792 Sum_probs=340.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCCccccc
Q 014743 41 HELQLQVRQKTHNLNRLEAQR--NELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDIT 118 (419)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (419)
.+++..+..|..+.+.+..+. ..++.++..++++++.++..|..+|++.+.++++.+++++.+++.|++.+.+.++.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 140 (438)
T PTZ00361 61 LKLERIKDYLLLEEEFITNQEAQKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKE 140 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCCHh
Confidence 334445555555555555554 367889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeE
Q 014743 119 KITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGV 198 (419)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~i 198 (419)
.++||++|.++..+..+..+++.+.|+.++.+.+++.|+.+|+||+|+++++++|.+++..|+.+|++|..+|+.+|+++
T Consensus 141 ~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gV 220 (438)
T PTZ00361 141 QLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGV 220 (438)
T ss_pred hCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCC
Q 014743 199 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 278 (419)
Q Consensus 199 LL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~ 278 (419)
|||||||||||++|+++|++++.+|+.+.++++.++|+|+++..++.+|..|+.+.|+||||||||+++.+|.+. .+++
T Consensus 221 LL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~-~sgg 299 (438)
T PTZ00361 221 ILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDA-TSGG 299 (438)
T ss_pred EEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCC-CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887643 2445
Q ss_pred CHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHH
Q 014743 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLK 358 (419)
Q Consensus 279 ~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~ 358 (419)
+.++++.+.++|..++++....++.||+|||+++.+|++++||||||+.|+|++|+.++|.+||+.++.++.+..++++.
T Consensus 300 ~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~ 379 (438)
T PTZ00361 300 EKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLE 379 (438)
T ss_pred cHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHH
Confidence 67888999999999999888889999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 014743 359 KIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 359 ~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~ 407 (419)
.++..++||||+||.++|++|++.|+++++..|+.+||..|+.+++.+.
T Consensus 380 ~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~~ 428 (438)
T PTZ00361 380 EFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRK 428 (438)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999997653
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-59 Score=479.45 Aligned_cols=308 Identities=41% Similarity=0.672 Sum_probs=269.6
Q ss_pred hCCCccHHHHHHHhhcccchhhccCCCeeEEecCCccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCC
Q 014743 79 QEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDS 158 (419)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 158 (419)
...++|+|..+..++.......+.. +.. +.......+.|+... ..+.+.|++
T Consensus 380 ~~thGyvGaDL~~l~~ea~~~~~r~------------~~~-----------~~~~A~~~i~psa~R-----e~~ve~p~v 431 (693)
T KOG0730|consen 380 VSTHGYVGADLAALCREASLQATRR------------TLE-----------IFQEALMGIRPSALR-----EILVEMPNV 431 (693)
T ss_pred HHccchhHHHHHHHHHHHHHHHhhh------------hHH-----------HHHHHHhcCCchhhh-----heeccCCCC
Confidence 4578899988888887765543322 000 001111122222222 233578999
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhch
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 238 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~ 238 (419)
+|+||||+++++++|.+.|.+|++||+.|.++|+.||+|||||||||||||++||++|++.+++|+.|.+.+++++|+|+
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGe 511 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGE 511 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHh
Q 014743 239 GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQAL 318 (419)
Q Consensus 239 ~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~al 318 (419)
+++.++++|..|+..+||||||||||++++.|+++. .....+++.++|.+|||+....+|+||++||+|+.||+|+
T Consensus 512 SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~----~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~AL 587 (693)
T KOG0730|consen 512 SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS----SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPAL 587 (693)
T ss_pred hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc----cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHH
Confidence 999999999999999999999999999999996432 2456789999999999999999999999999999999999
Q ss_pred cCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--CCCCCHHHH
Q 014743 319 LRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER--RIHVTQEDF 396 (419)
Q Consensus 319 lr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~--~~~vt~eD~ 396 (419)
+||||||+.|+||+||.+.|.+||+.+++++++.+++|+..||+.|+|||||||..+|++|+..|+++. -..|+.+||
T Consensus 588 lRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf 667 (693)
T KOG0730|consen 588 LRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHF 667 (693)
T ss_pred cCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999985 467999999
Q ss_pred HHHHHHHHhhhhcchhhhHhhh
Q 014743 397 EMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 397 ~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
+.|+..+.++.....++.++-|
T Consensus 668 ~~al~~~r~s~~~~~~~~Ye~f 689 (693)
T KOG0730|consen 668 EEALKAVRPSLTSELLEKYEDF 689 (693)
T ss_pred HHHHHhhcccCCHHHHHHHHHH
Confidence 9999999998887777665544
No 10
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.9e-57 Score=461.14 Aligned_cols=374 Identities=55% Similarity=0.884 Sum_probs=351.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCCcc
Q 014743 36 YLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSI 115 (419)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (419)
+.+++.+++.+++.++.+++++..+.+.++.++++++++++.++.++..++.+.+.+++...+++..++..|++++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~~~ 85 (389)
T PRK03992 6 LEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVNVSPFI 85 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEeccccC
Confidence 44566677889999999999999999999999999999999999999999999999999988888888888999999999
Q ss_pred ccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCC
Q 014743 116 DITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP 195 (419)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p 195 (419)
+...+.+|..|.+++....+..++|...++.+..+.+...|+++|++|+|+++++++|.+.|..|+.+|+.|..+|+.+|
T Consensus 86 ~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p 165 (389)
T PRK03992 86 DREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPP 165 (389)
T ss_pred CHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCC
Confidence 99999999999999888888899999999988888999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCC
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 275 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~ 275 (419)
+++|||||||||||++|+++|++++.+|+.++++++..+|+|+.+..++.+|..|+.+.|+||||||+|++++.|.+..
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~- 244 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG- 244 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998886543
Q ss_pred CCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCC
Q 014743 276 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI 355 (419)
Q Consensus 276 ~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~ 355 (419)
.+.+.++++.+.+++.+++++...+++.||+|||+++.+|++++||||||..|+||+|+.++|.+||+.+++.+.+..++
T Consensus 245 ~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~ 324 (389)
T PRK03992 245 TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV 324 (389)
T ss_pred CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC
Confidence 33467888999999999998888889999999999999999999999999999999999999999999999999988889
Q ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhcc
Q 014743 356 DLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK 410 (419)
Q Consensus 356 dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~~~ 410 (419)
++..+|..|+||+|+||.++|++|++.|+++++..|+.+||..|+.++.++..++
T Consensus 325 ~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 325 DLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999999998876554
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-57 Score=460.23 Aligned_cols=265 Identities=44% Similarity=0.719 Sum_probs=246.6
Q ss_pred ccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc
Q 014743 143 VDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 222 (419)
Q Consensus 143 ~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~ 222 (419)
+.|.........+|+++|+||||++++..++..+|.+|.++|++|+++|+..|.|||||||||||||+||||+|++.+.+
T Consensus 493 iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~N 572 (802)
T KOG0733|consen 493 IQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN 572 (802)
T ss_pred cCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCc
Confidence 34444555667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCe
Q 014743 223 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 302 (419)
Q Consensus 223 ~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 302 (419)
|+.|.+.+++++|+|++++.+|++|..||..+||||||||+|+|++.|++.+ .....++++|||.+|||+..+.+|
T Consensus 573 FisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~----s~~s~RvvNqLLtElDGl~~R~gV 648 (802)
T KOG0733|consen 573 FISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG----SSVSSRVVNQLLTELDGLEERRGV 648 (802)
T ss_pred eEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC----chhHHHHHHHHHHHhcccccccce
Confidence 9999999999999999999999999999999999999999999999997643 455678999999999999999999
Q ss_pred EEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHh--hcccCCCCCHHHHHHHcC--CCCHHHHHHHHHH
Q 014743 303 KVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR--RMNLMRGIDLKKIAEKMN--GASGAELKAVCTE 378 (419)
Q Consensus 303 ~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~--~~~~~~~~dl~~la~~t~--G~sgadi~~l~~~ 378 (419)
.||++||+||.+|||++||||||+.+++++|+.++|.+||+.+++ +.++..++|++.||..+. |||||||..||++
T Consensus 649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999 788999999999999887 9999999999999
Q ss_pred HHHHHHHhc----------------CCCCCHHHHHHHHHHHHhhhhcch
Q 014743 379 AGMFALRER----------------RIHVTQEDFEMAVAKVMKKETEKN 411 (419)
Q Consensus 379 A~~~a~~~~----------------~~~vt~eD~~~Al~~v~~~~~~~~ 411 (419)
|.+.|+++. ...++..||+.|++++.++..+..
T Consensus 729 Asi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~d 777 (802)
T KOG0733|consen 729 ASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERD 777 (802)
T ss_pred HHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHH
Confidence 999999862 235888999999999998776544
No 12
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.7e-54 Score=436.62 Aligned_cols=361 Identities=55% Similarity=0.897 Sum_probs=339.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCCccccccCC
Q 014743 42 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKIT 121 (419)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (419)
+++.++++++++++.+..+.+.++++++.+++++++++..+..++.+.+.+++...+++..++.+|++++...++...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLK 82 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCC
Confidence 34567888888888888888899999999999999999999999999999999999998989999999999999999999
Q ss_pred CCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEE
Q 014743 122 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLY 201 (419)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~ 201 (419)
+|+.+.++.....+..++|...++.+..+.+.+.|.++|++|+|+++++++|.+++..|+.+|+.|..+|+.+|+++|||
T Consensus 83 ~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~ 162 (364)
T TIGR01242 83 PGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLY 162 (364)
T ss_pred CCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEE
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHH
Q 014743 202 GPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 202 GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
||||||||++|+++|++++.+|+++.++++..+|+|+....++.+|..++...|+||||||+|.++..+.+.. .+.+++
T Consensus 163 GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~-~~~~~~ 241 (364)
T TIGR01242 163 GPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG-TSGDRE 241 (364)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC-CCccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876533 345678
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHH
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIA 361 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la 361 (419)
.++.+.+++.+++++...+++.||+|||+++.+|++++||||||+.|+|+.|+.++|.+|++.++..+.+..++++..++
T Consensus 242 ~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la 321 (364)
T TIGR01242 242 VQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIA 321 (364)
T ss_pred HHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHH
Confidence 88999999999998877789999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v 403 (419)
..|+||+|+||.++|++|++.|+++++..|+.+||..|+.++
T Consensus 322 ~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 322 KMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999986
No 13
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-55 Score=414.88 Aligned_cols=354 Identities=48% Similarity=0.763 Sum_probs=332.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCCccccccCCCCCeeee
Q 014743 49 QKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVAL 128 (419)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (419)
+....++........+.+++.+....+..++.....++.++..++++..+++.+.+++|++.+...+|..+|+.|+++++
T Consensus 21 ~~~~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~l 100 (388)
T KOG0651|consen 21 SISSALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVL 100 (388)
T ss_pred chhhHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcEEEEcccccchhhhccCceeee
Confidence 33344455555555666777777778888889899999999999999999999999999999999999999999999999
Q ss_pred cCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChH
Q 014743 129 RNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGK 208 (419)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGK 208 (419)
.-+..++-..+|.+.+ .+..+..+...+.+|+.|+|+-.++.++++.|+.|+.+|++|.++|+.+|++++||||||+||
T Consensus 101 dittltIm~~lprevd-~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGK 179 (388)
T KOG0651|consen 101 DITTLTIMRGLPREVD-LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGK 179 (388)
T ss_pred eeeeeehhcccchHHH-HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCch
Confidence 9999999999999999 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHH
Q 014743 209 TLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 288 (419)
Q Consensus 209 T~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~ 288 (419)
|++|+++|..++++|+.+..+++.++|+|++.+.+|+.|..|+.+.|||||+||||++++.|.+.+ +..+.+++++|++
T Consensus 180 Tlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~-Ts~dreiqrTLMe 258 (388)
T KOG0651|consen 180 TLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEG-TSSDREIQRTLME 258 (388)
T ss_pred hHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccc-cchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999996544 5578999999999
Q ss_pred HHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCC
Q 014743 289 LLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGAS 368 (419)
Q Consensus 289 lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~s 368 (419)
++++|++++..+.|.+|+|||+|+.|+|+|+||||+|+.+++|.|+...|..|++.|...+.....+|.+++.+.++||+
T Consensus 259 Llnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~ 338 (388)
T KOG0651|consen 259 LLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFN 338 (388)
T ss_pred HHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 014743 369 GAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 369 gadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~ 404 (419)
|+|+.+.|++|.+.|+++.+..+-++||..++.++-
T Consensus 339 gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 339 GADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred hHHHhhhcccccccccchhhHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998874
No 14
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-54 Score=441.93 Aligned_cols=265 Identities=41% Similarity=0.711 Sum_probs=245.5
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeC
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~ 228 (419)
.....++|.++|+||||++++|.+|.+.|..||+||++|.+ |+.+..|+|||||||||||++|||+|.++..+|+.|.+
T Consensus 660 aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKG 738 (953)
T KOG0736|consen 660 AIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKG 738 (953)
T ss_pred hcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecC
Confidence 34556899999999999999999999999999999999976 99999999999999999999999999999999999999
Q ss_pred cchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc--cCCCeEEEE
Q 014743 229 SELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE--ASNKIKVLM 306 (419)
Q Consensus 229 s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~--~~~~v~VI~ 306 (419)
.+++++|+|++|.++|++|++||..+||||||||+|.++++|+.++++++ -+.|++.|+|.++|++. +...|+||+
T Consensus 739 PELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG--VMDRVVSQLLAELDgls~~~s~~VFViG 816 (953)
T KOG0736|consen 739 PELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG--VMDRVVSQLLAELDGLSDSSSQDVFVIG 816 (953)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccc--cHHHHHHHHHHHhhcccCCCCCceEEEe
Confidence 99999999999999999999999999999999999999999998877665 46789999999999987 456899999
Q ss_pred EeCCcchhhHHhcCCCceeEEEEcCCC-CHHHHHHHHHHHHhhcccCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Q 014743 307 ATNRIDILDQALLRPGRIDRKIEFPNP-NEESRLDILKIHSRRMNLMRGIDLKKIAEKMN-GASGAELKAVCTEAGMFAL 384 (419)
Q Consensus 307 tTn~~~~ld~allr~gRfd~~I~~~~P-~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~-G~sgadi~~l~~~A~~~a~ 384 (419)
||||||.|||+|+||||||+.+++.++ +.+.+..||+..++++.++.++|+.+||+.++ .|||||+.++|..|.+.|+
T Consensus 817 ATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~Ai 896 (953)
T KOG0736|consen 817 ATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAI 896 (953)
T ss_pred cCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 57789999999999999999999999999997 7999999999999999999
Q ss_pred Hhc-----------------CCCCCHHHHHHHHHHHHhhhhcchhhhHh
Q 014743 385 RER-----------------RIHVTQEDFEMAVAKVMKKETEKNMSLRK 416 (419)
Q Consensus 385 ~~~-----------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~ 416 (419)
++. ...|+++||..|+++..++.+..+...++
T Consensus 897 kR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye 945 (953)
T KOG0736|consen 897 KRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYE 945 (953)
T ss_pred HHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHH
Confidence 872 35699999999999999988877654443
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-51 Score=410.62 Aligned_cols=248 Identities=40% Similarity=0.650 Sum_probs=236.7
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
...+++|+||-|.|+++++|.+.|.+ |++|..|.++|-+-|+||||.||||||||+||||+|++.+.+|++..+|+|-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34468899999999999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 234 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 234 ~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
.|+|.+.+.+|++|..|+.++||||||||||+++++|.... .+ ....+++|+|.+||||..+.+|+||++||.|+.
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QH-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA 451 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HH-HHHHHHHHHHHHhcCcCcCCceEEEeccCChhh
Confidence 99999999999999999999999999999999999996432 22 567889999999999999999999999999999
Q ss_pred hhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q 014743 314 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 393 (419)
Q Consensus 314 ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~ 393 (419)
||++|.||||||++|.+|.||...|.+||+.|+.++.+..++|+.-||+-|.||+||||.+|++.|+..|..++...|++
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM 531 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTM 531 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 014743 394 EDFEMAVAKVMKK 406 (419)
Q Consensus 394 eD~~~Al~~v~~~ 406 (419)
.||+.|-.+++-.
T Consensus 532 ~~LE~akDrIlMG 544 (752)
T KOG0734|consen 532 KHLEFAKDRILMG 544 (752)
T ss_pred HHHhhhhhheeec
Confidence 9999999998753
No 16
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-50 Score=388.39 Aligned_cols=261 Identities=42% Similarity=0.648 Sum_probs=240.7
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
+..-|...|+||.|+.++|+-|.++|..|+..|+.|+.+ ..|=+|+|++||||||||+||||+|.+++..||.|+.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 345788999999999999999999999999999999842 2445899999999999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC-CC---eEEEEE
Q 014743 232 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS-NK---IKVLMA 307 (419)
Q Consensus 232 ~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~-~~---v~VI~t 307 (419)
.++|-|++++.+|-+|+.|+.++|++|||||||+||+.|+. ++.|...+++-.+||.+|||.... .+ |+|+++
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~---s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGG---SSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCC---ccchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 99999999999999999999999999999999999999964 456777788889999999987644 24 889999
Q ss_pred eCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 014743 308 TNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER 387 (419)
Q Consensus 308 Tn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~ 387 (419)
||.|++||.+|+| ||.+.|++|+|+.+.|..+|++.++.....+++++..||..++||||+||.++|++|.+.++|+.
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999862
Q ss_pred -----------------CCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 388 -----------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 388 -----------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
...++.+||+.|++++.++.+...+.-++.|
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW 484 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKW 484 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHH
Confidence 2459999999999999999998888888888
No 17
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-49 Score=412.96 Aligned_cols=252 Identities=45% Similarity=0.761 Sum_probs=239.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~ 234 (419)
-+.++|+||.|.++++++|.++|.+ |+||+.|.++|...|+|+||+||||||||+||||+|++.+.||+.+++|+|+..
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 3458999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 235 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 235 ~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
++|.....++.+|..|+.++|||||+||||+++..|.+....+.+.+-..+++|+|.+||++....+|+|+++||+++.+
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 99999999999999999999999999999999999964344566778889999999999999999999999999999999
Q ss_pred hHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q 014743 315 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 393 (419)
Q Consensus 315 d~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~ 393 (419)
|++|+||||||+.|.++.|+..+|.+|++.|++..++. +++|+..||.+|+||+|+||.++|++|+..|.|+....|+.
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~ 543 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGT 543 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccch
Confidence 99999999999999999999999999999999999884 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 014743 394 EDFEMAVAKVMKKE 407 (419)
Q Consensus 394 eD~~~Al~~v~~~~ 407 (419)
.||+.|+++++...
T Consensus 544 ~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 544 KDLEYAIERVIAGM 557 (774)
T ss_pred hhHHHHHHHHhccc
Confidence 99999999887653
No 18
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-49 Score=397.20 Aligned_cols=226 Identities=42% Similarity=0.685 Sum_probs=213.8
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhh
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 235 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~ 235 (419)
+++.|.+|||++..+.+|.+.|.. ++||+.|..+|+.||+|||||||||||||+||+|+|++++.+|+.|++.++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 367899999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC----CCeEEEEEeCCc
Q 014743 236 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS----NKIKVLMATNRI 311 (419)
Q Consensus 236 ~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~----~~v~VI~tTn~~ 311 (419)
.|++++.++++|+.|+..+|||+||||||+|.++|.. +....-++++.|||..||++... ..|+||+|||+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 9999999999999999999999999999999999954 23334567888999999987654 579999999999
Q ss_pred chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 014743 312 DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386 (419)
Q Consensus 312 ~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~ 386 (419)
|.|||+|+|+||||+.|.+..|+..+|.+||+...+.+.+..++|+..||..|+||.||||.+||.+|++.|+++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 19
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=5.7e-47 Score=391.11 Aligned_cols=364 Identities=32% Similarity=0.533 Sum_probs=297.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHH-hhcccchhhccCCCeeEEecCCccccc
Q 014743 40 IHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKV-MGKNKVLVKVHPEGKYVVDIDKSIDIT 118 (419)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (419)
+.++..++..+.++..++.+.+.+.++++..++++++++..+|...|+++.. .++..+.+ ..++.++.+.+.+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~~~ 81 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQTAIDDETAEV-FTAGRRMRVTVSPNVNAA 81 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEeccCCCeEEE-EeCCceEEEEeCCCCCHH
Confidence 3456778888999999999999999999999999999999999999998876 44445666 567778999999999999
Q ss_pred cCCCCCeeeecCCceeE--------------eecCCC------------------------Cc--------c--------
Q 014743 119 KITPSTRVALRNDSYVL--------------HLILPS------------------------KV--------D-------- 144 (419)
Q Consensus 119 ~~~~~~~~~~~~~~~~~--------------~~~~~~------------------------~~--------~-------- 144 (419)
.+.+|..|.++..-..+ ..++.. .. +
T Consensus 82 ~l~~g~~v~l~e~~~~v~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 161 (512)
T TIGR03689 82 ELVPGQTVRLNEALQVVEARDFETVGEIATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFE 161 (512)
T ss_pred HCCCCCEEEECCcceeeccCCCCCCCceEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhh
Confidence 99999999987321111 111110 00 0
Q ss_pred ----ccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 145 ----PLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 145 ----~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
..+..+..+++|+++|++|+|+++++++|+++|..|+.+|++|..+|+.+|+++|||||||||||++++++|+++.
T Consensus 162 ~~~~~~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 162 AVPKAEVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred cCCHhHHhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 0122334567899999999999999999999999999999999999999999999999999999999999999874
Q ss_pred C----------ceEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHHHHH
Q 014743 221 C----------TFIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 286 (419)
Q Consensus 221 ~----------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l 286 (419)
. .|+.+.++++.++|+|+++..++.+|+.|+.. .|+||||||+|+++..|+... .+....+++
T Consensus 242 ~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~---s~d~e~~il 318 (512)
T TIGR03689 242 QRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV---SSDVETTVV 318 (512)
T ss_pred cccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc---cchHHHHHH
Confidence 3 36778889999999999999999999998874 699999999999998875321 112234567
Q ss_pred HHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhh-cccC---------CCCC
Q 014743 287 LELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR-MNLM---------RGID 356 (419)
Q Consensus 287 ~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~-~~~~---------~~~d 356 (419)
.++|..++++...++++||+|||+++.|||+++||||||.+|+|++|+.++|.+||+.++.. +++. ...+
T Consensus 319 ~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~ 398 (512)
T TIGR03689 319 PQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREAT 398 (512)
T ss_pred HHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHH
Confidence 79999999988888999999999999999999999999999999999999999999998764 3331 1122
Q ss_pred HHHHHHH-----------------------------cCCCCHHHHHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHH
Q 014743 357 LKKIAEK-----------------------------MNGASGAELKAVCTEAGMFALRE----RRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 357 l~~la~~-----------------------------t~G~sgadi~~l~~~A~~~a~~~----~~~~vt~eD~~~Al~~v 403 (419)
+..++.. ++.+||++|+++|.+|...|+++ ....++.+||..|+..-
T Consensus 399 ~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 399 AAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDE 478 (512)
T ss_pred HHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHh
Confidence 2233222 56799999999999999999876 34689999999999987
Q ss_pred Hhhh
Q 014743 404 MKKE 407 (419)
Q Consensus 404 ~~~~ 407 (419)
....
T Consensus 479 ~~~~ 482 (512)
T TIGR03689 479 FRES 482 (512)
T ss_pred hccc
Confidence 7644
No 20
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-46 Score=388.84 Aligned_cols=251 Identities=42% Similarity=0.724 Sum_probs=240.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~ 234 (419)
...++|.|+.|.+++++++.+.|.. |++|..|..+|..-|+|+||+||||||||+|||++|.+.+.||+.+++|+++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4668999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 235 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 235 ~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
|+|.+...+|++|..|+.++||||||||||+++..|+.. .++++.+...+++|+|.+||++..+.+|+||++||+|+.+
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVl 301 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVL 301 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccc
Confidence 999999999999999999999999999999999999654 3556777888999999999999988899999999999999
Q ss_pred hHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 014743 315 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 394 (419)
Q Consensus 315 d~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~e 394 (419)
||+|+||||||+.|.++.||...|.+|++.|.++.++..++|+..+|+.|.||+|+|+.+++++|+..|.|+++..+++.
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~ 381 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMR 381 (596)
T ss_pred hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 014743 395 DFEMAVAKVMKKE 407 (419)
Q Consensus 395 D~~~Al~~v~~~~ 407 (419)
||+.|+.+++...
T Consensus 382 ~i~ea~drv~~G~ 394 (596)
T COG0465 382 DIEEAIDRVIAGP 394 (596)
T ss_pred chHHHHHHHhcCc
Confidence 9999999999643
No 21
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.2e-45 Score=399.18 Aligned_cols=263 Identities=47% Similarity=0.779 Sum_probs=243.7
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
...|.++|++|+|++.+++.|.+.+.+|+.+|+.|.++|+.+|+++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 233 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 233 ~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
++|+|+++..++.+|..|+..+||||||||||+|++.|+... ......+++.++|.+++++...++++||+|||+++
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~---~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF---DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC---CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 999999999999999999999999999999999999885422 22345678889999999988888999999999999
Q ss_pred hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Q 014743 313 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER----- 387 (419)
Q Consensus 313 ~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~----- 387 (419)
.+|++++||||||+.|+||+|+.++|.+||+.+++++++..++|+..||..|+||||+||.++|++|++.|+++.
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~ 681 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPA 681 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998852
Q ss_pred -------------CCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 388 -------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 388 -------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
...|+.+||..|++++.++.+...+..++-|
T Consensus 682 ~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~ 725 (733)
T TIGR01243 682 KEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERL 725 (733)
T ss_pred chhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2379999999999999998888777666666
No 22
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-45 Score=347.28 Aligned_cols=256 Identities=37% Similarity=0.599 Sum_probs=228.8
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
.+.+.|++.|+||.|++.+++.|+++|.+|++.|++|.. +-.|=++|||||||||||++||||+|.+.+..|+.|+.|+
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 455789999999999999999999999999999999974 2345589999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC-CCeEEEEEeC
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS-NKIKVLMATN 309 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~-~~v~VI~tTn 309 (419)
++++|.|++++.++++|+.||++.||||||||||.+|+.|++. .....+++-.++|.+|.|..++ ++|+|+++||
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en----EseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN----ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC----chHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 9999999999999999999999999999999999999998652 3445677788999999987654 5899999999
Q ss_pred CcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Q 014743 310 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER- 387 (419)
Q Consensus 310 ~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~- 387 (419)
.|+.||.+++| ||++.|++|+|+...|..+|++|+...+. ..+.|+.+|+..|+||||+||.-+++.|.|..+|.-
T Consensus 278 iPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 278 IPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred CchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 99999999999 99999999999999999999999987654 567899999999999999999999999999888741
Q ss_pred ---------------------------------------------CCCCCHHHHHHHHHHHHhhhhcchhh
Q 014743 388 ---------------------------------------------RIHVTQEDFEMAVAKVMKKETEKNMS 413 (419)
Q Consensus 388 ---------------------------------------------~~~vt~eD~~~Al~~v~~~~~~~~~~ 413 (419)
...||+.||..++.+..|....+.+.
T Consensus 356 sAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~ 426 (439)
T KOG0739|consen 356 SATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLL 426 (439)
T ss_pred hhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHH
Confidence 13589999999999988876655443
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=378.85 Aligned_cols=251 Identities=52% Similarity=0.770 Sum_probs=235.2
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
...|.++|++++|++.+++.+.+.+.+|+.+|+.|...|+.+++++|||||||||||+||+++|.+++.+|+.+++++++
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 233 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 233 ~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
++|+|+++++++++|..|+..+||||||||+|++++.|+.+. +....+++.++|.++++.....+|+||+|||+++
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~----~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~ 389 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE----DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD 389 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC----chHHHHHHHHHHHHhcCCCccCceEEEecCCCcc
Confidence 999999999999999999999999999999999999996532 2233688999999999999999999999999999
Q ss_pred hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc--cCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-CC
Q 014743 313 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN--LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER-RI 389 (419)
Q Consensus 313 ~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~--~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~-~~ 389 (419)
.+|++++||||||+.++||+||.++|.+||+.+++... +..++|+..++..|+||+|+||..+|++|.+.+.++. ..
T Consensus 390 ~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~ 469 (494)
T COG0464 390 DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRR 469 (494)
T ss_pred ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999998544 4678999999999999999999999999999999988 78
Q ss_pred CCCHHHHHHHHHHHHhhh
Q 014743 390 HVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 390 ~vt~eD~~~Al~~v~~~~ 407 (419)
.++++||..|+..+.++.
T Consensus 470 ~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 470 EVTLDDFLDALKKIKPSV 487 (494)
T ss_pred CccHHHHHHHHHhcCCCC
Confidence 899999999999976653
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=371.53 Aligned_cols=226 Identities=42% Similarity=0.693 Sum_probs=216.2
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhh
Q 014743 157 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 236 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~ 236 (419)
...|+||||+.++++.+.+.|++|-++|.+|.+.+++.+.|+|||||||||||+||-++|..++..|+.|.++++.++|+
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 237 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 237 g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|.++.++|.+|.+|+...|||+||||+|.++++|+.+.++ -..|++.|+|.+|||.+.-.+|.|+++|.||+.+||
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG----VTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG----VTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC----chHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 9999999999999999999999999999999999765332 356889999999999999999999999999999999
Q ss_pred HhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 014743 317 ALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386 (419)
Q Consensus 317 allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~ 386 (419)
||+||||+|+.++.|.|++.+|.+|++.+...+....++|++.+|..|+|||||||..++..|.+.|+++
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999899999999999999999999999999999999988765
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=9.9e-45 Score=335.93 Aligned_cols=248 Identities=36% Similarity=0.593 Sum_probs=227.2
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
+.+++.+++||+||++++++.+-.+.+ |.+|+.|.. -.|+++|||||||||||++||++|++.+.+++.++..+++
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 457889999999999999998877666 899998876 5789999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 233 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 233 ~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
+.|+|++.+.++++++.|+..+|||+||||+|+|+-.|.=+ ....++..+++.+|.+||++..+.+|+.|++||+|+
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ---elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~ 265 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ---ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPE 265 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH---HhcccHHHHHHHHHHhccCcccCCceEEEeecCChh
Confidence 99999999999999999999999999999999998766322 234467788889999999999889999999999999
Q ss_pred hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHH-HHHHHHHHHHHHhcCCCC
Q 014743 313 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELK-AVCTEAGMFALRERRIHV 391 (419)
Q Consensus 313 ~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~-~l~~~A~~~a~~~~~~~v 391 (419)
.||+++++ ||...|+|.+|+.++|.+|++.+.+++++.-+.++..+++.|.|+||+||+ .++..|.+.|+.+.+..|
T Consensus 266 ~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v 343 (368)
T COG1223 266 LLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKV 343 (368)
T ss_pred hcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhh
Confidence 99999999 999999999999999999999999999999999999999999999999998 577889999999999999
Q ss_pred CHHHHHHHHHHHHhhhhc
Q 014743 392 TQEDFEMAVAKVMKKETE 409 (419)
Q Consensus 392 t~eD~~~Al~~v~~~~~~ 409 (419)
+.+||+.|+.+.++...+
T Consensus 344 ~~edie~al~k~r~~r~~ 361 (368)
T COG1223 344 EREDIEKALKKERKRRAP 361 (368)
T ss_pred hHHHHHHHHHhhccccCC
Confidence 999999999986655443
No 26
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-43 Score=339.65 Aligned_cols=244 Identities=38% Similarity=0.640 Sum_probs=222.8
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCChhHHhhcC-CCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhh
Q 014743 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLG-IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 236 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~g-i~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~ 236 (419)
++|+||||++++++++.+.|.+|+++|++|..-+ +.+++|+|||||||||||++|+++|.+.++.|+.|.++.+.++|+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 6789999999999999999999999999997544 478999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCC--eEEEEEeCCcchh
Q 014743 237 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK--IKVLMATNRIDIL 314 (419)
Q Consensus 237 g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~--v~VI~tTn~~~~l 314 (419)
|+.++.++.+|..|...+|+||||||+|.+++.|. ++.|......-.|++..-||+.++++ |+|++|||+|.++
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 99999999999999999999999999999999883 23445555556789988888877765 9999999999999
Q ss_pred hHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----c---
Q 014743 315 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE----R--- 387 (419)
Q Consensus 315 d~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~----~--- 387 (419)
|.+++| |+.+.++++.|+..+|.+||+..++.-++.+++|+..+|..|+||||+||+.+|+.|++..+|+ .
T Consensus 245 DeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 245 DEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred HHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999888764 1
Q ss_pred ---------------------CCCCCHHHHHHHHHHHHhhh
Q 014743 388 ---------------------RIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 388 ---------------------~~~vt~eD~~~Al~~v~~~~ 407 (419)
...++++||..|...|-+..
T Consensus 323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~ 363 (386)
T KOG0737|consen 323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASV 363 (386)
T ss_pred hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHH
Confidence 25789999999999776653
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.6e-42 Score=361.04 Aligned_cols=251 Identities=42% Similarity=0.749 Sum_probs=234.1
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
...|.++|+||+|++++++++.+.+.. +++|+.|.++|..+|+++|||||||||||++|+++|++++.+++.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 346789999999999999999998886 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 233 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 233 ~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
+.|+|.+...++.+|+.|+..+|+||||||||.+++.+... .++.+....+++.++|.+++++...++++||+|||+++
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~-~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC-cCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 99999999999999999999999999999999999887542 23345667788899999999988888999999999999
Q ss_pred hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 014743 313 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVT 392 (419)
Q Consensus 313 ~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt 392 (419)
.+||+++||||||+.|+|+.|+.++|.+|++.+++..++..++++..+|..|.||||+||.++|++|+..|.+++...++
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~ 284 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEIT 284 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999888778899999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHh
Q 014743 393 QEDFEMAVAKVMK 405 (419)
Q Consensus 393 ~eD~~~Al~~v~~ 405 (419)
.+||+.|+.++..
T Consensus 285 ~~~l~~a~~~~~~ 297 (495)
T TIGR01241 285 MNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999865
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=5.8e-42 Score=354.15 Aligned_cols=254 Identities=27% Similarity=0.434 Sum_probs=219.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhh
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 235 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~ 235 (419)
++.+|++|||++.+++.+.+.... .+..+.++|+++|+|+|||||||||||++||++|++++.+++.++++.+.++|
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 567899999999999999876543 24455788999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 236 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 236 ~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+|+++..++++|..|+..+||||||||||+++..+...+ ......+++.+++..++. ...+++||+|||+++.+|
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~---d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG---DSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC---CchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 999999999999999999999999999999987653322 223445667777777763 456899999999999999
Q ss_pred HHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc--CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q 014743 316 QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL--MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 393 (419)
Q Consensus 316 ~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~--~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~ 393 (419)
++++|+||||+.++|+.|+.++|.+||+.++++... ..+.|+..||..|+||||+||+++|.+|+..|..++ ..++.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCH
Confidence 999999999999999999999999999999988653 357899999999999999999999999999998655 46899
Q ss_pred HHHHHHHHHHHhhhh--cchhhhHhhh
Q 014743 394 EDFEMAVAKVMKKET--EKNMSLRKLW 418 (419)
Q Consensus 394 eD~~~Al~~v~~~~~--~~~~~~~~~~ 418 (419)
+||..|+.++.|... .+.+...+.|
T Consensus 454 ~dl~~a~~~~~Pls~~~~e~i~~~~~W 480 (489)
T CHL00195 454 DDILLALKQFIPLAQTEKEQIEALQNW 480 (489)
T ss_pred HHHHHHHHhcCCCcccCHHHHHHHHHH
Confidence 999999999999653 3445555556
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=7.9e-41 Score=355.52 Aligned_cols=249 Identities=43% Similarity=0.766 Sum_probs=231.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~ 234 (419)
.+..+|+||+|++++++++.+.+.. +++|+.|..+|...|+++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3567899999999999999998866 899999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 235 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 235 ~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
++|.....++.+|..|+.+.||||||||||+++..|... .++.+.+...++.++|.+++++....+++||+|||+++.+
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAG-IGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCC-CCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 999988999999999999999999999999999877542 2345567778899999999998888899999999999999
Q ss_pred hHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 014743 315 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 394 (419)
Q Consensus 315 d~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~e 394 (419)
|++++||||||+.|.|++|+.++|.+||+.+++...+..++++..+|..|.||+|+||.++|++|+..|.+++...++.+
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~ 414 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMK 414 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 014743 395 DFEMAVAKVMK 405 (419)
Q Consensus 395 D~~~Al~~v~~ 405 (419)
||+.|+.+++.
T Consensus 415 dl~~Ai~rv~~ 425 (638)
T CHL00176 415 EIDTAIDRVIA 425 (638)
T ss_pred HHHHHHHHHHh
Confidence 99999999854
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.4e-38 Score=341.16 Aligned_cols=249 Identities=43% Similarity=0.708 Sum_probs=231.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhh
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 235 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~ 235 (419)
...+|+++.|.+.+++.+.+.+.. +.+|..+..++...|+++||+||||||||++++++|++++.+|+.++++++...|
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 456789999999999999999887 6788889999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 236 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 236 ~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+|.+...++.+|..|+..+||||||||+|+++..|... .++.+....+++.++|.+|+++....+++||+|||+++.+|
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~-~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD 304 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG-LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCC-CCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcC
Confidence 99999999999999999999999999999999887542 23445666788999999999998888999999999999999
Q ss_pred HHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 014743 316 QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQED 395 (419)
Q Consensus 316 ~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD 395 (419)
++++||||||+.|+|+.|+.++|.+|++.++++.++..++|+..+|..|.||||+||.++|++|+..|+++++..++..|
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d 384 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 384 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHH
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 014743 396 FEMAVAKVMKK 406 (419)
Q Consensus 396 ~~~Al~~v~~~ 406 (419)
|+.|+.++...
T Consensus 385 ~~~a~~~v~~g 395 (644)
T PRK10733 385 FEKAKDKIMMG 395 (644)
T ss_pred HHHHHHHHhcc
Confidence 99999988653
No 31
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-39 Score=321.61 Aligned_cols=260 Identities=40% Similarity=0.649 Sum_probs=224.4
Q ss_pred CCCCCccc--ccCcHHHHHHH-HHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc-eEEEeCcc
Q 014743 155 VPDSTYDM--IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-FIRVSGSE 230 (419)
Q Consensus 155 ~p~~~~~~--I~G~~~~~~~l-~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-~i~v~~s~ 230 (419)
-|+..|++ |||++.....| +++...-..-|++.+++|++.-+|+|||||||||||++||.|...+++. --.|++++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 35566665 67999888877 4555555778999999999999999999999999999999999988653 45689999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhh--------CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCe
Q 014743 231 LVQKYIGEGSRMVRELFVMAREH--------APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 302 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~--------~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 302 (419)
++++|+|+++.++|.+|..|.+. .-.||+|||||++|..|++..++.+ -...++.|+|..|||.+.-+|+
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TG--VhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTG--VHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCC--ccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999988541 1249999999999999977543222 2346688999999999999999
Q ss_pred EEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc----cCCCCCHHHHHHHcCCCCHHHHHHHHHH
Q 014743 303 KVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTE 378 (419)
Q Consensus 303 ~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~----~~~~~dl~~la~~t~G~sgadi~~l~~~ 378 (419)
+||+.|||.|.+|.||+|||||.-.+++.+||++.|.+|+++|++++. +..++|+.+||.+|..||||+|..+++.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999998864 5789999999999999999999999999
Q ss_pred HHHHHHHhc---------------CCCCCHHHHHHHHHHHHhhhhcchhhhHh
Q 014743 379 AGMFALRER---------------RIHVTQEDFEMAVAKVMKKETEKNMSLRK 416 (419)
Q Consensus 379 A~~~a~~~~---------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~ 416 (419)
|...|+-+. ...|+.+||..|+.+|.|...-++.++.+
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~ 503 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLER 503 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHH
Confidence 998887552 35699999999999999988777666543
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-38 Score=327.80 Aligned_cols=241 Identities=44% Similarity=0.746 Sum_probs=224.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhh
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 235 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~ 235 (419)
+++. .+++|...+...+++.+.+|+.+|..|..+|+++|+++|+|||||||||.+++++|++.++.++.+++++++++|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4555 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhhC-CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 236 IGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 236 ~g~~~~~i~~lf~~a~~~~-psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
.|+++..+|..|+.|..++ |++|||||+|.++++|... +....++..|++..+++.....+++||++||+|+.|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999999 9999999999999998542 223566777888888887778899999999999999
Q ss_pred hHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 014743 315 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 394 (419)
Q Consensus 315 d~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~e 394 (419)
|++++| ||||+.+.+..|+..+|.+|++.+++++++.+++++..+|..|+||+|+|+.++|++|++.+.++ +++
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~ 407 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLE 407 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHH
Confidence 999999 99999999999999999999999999999998899999999999999999999999999999887 889
Q ss_pred HHHHHHHHHHhhhh
Q 014743 395 DFEMAVAKVMKKET 408 (419)
Q Consensus 395 D~~~Al~~v~~~~~ 408 (419)
||..|+..+.++..
T Consensus 408 ~~~~A~~~i~psa~ 421 (693)
T KOG0730|consen 408 IFQEALMGIRPSAL 421 (693)
T ss_pred HHHHHHhcCCchhh
Confidence 99999988877653
No 33
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=6.5e-38 Score=349.88 Aligned_cols=218 Identities=17% Similarity=0.257 Sum_probs=187.0
Q ss_pred ccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhh------------------------
Q 014743 180 PIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY------------------------ 235 (419)
Q Consensus 180 ~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~------------------------ 235 (419)
|...+....++|+.+|+|+||+||||||||+||||||++++++|+.|+++++++++
T Consensus 1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 33455677899999999999999999999999999999999999999999998765
Q ss_pred -----------------hchhHH--HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc
Q 014743 236 -----------------IGEGSR--MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF 296 (419)
Q Consensus 236 -----------------~g~~~~--~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~ 296 (419)
++.+++ .++.+|+.|+..+||||||||||+|+.+.. -...+.+++++|++.
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds----------~~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES----------NYLSLGLLVNSLSRD 1764 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc----------ceehHHHHHHHhccc
Confidence 112222 388999999999999999999999976421 112367888888865
Q ss_pred c---cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHH--HhhcccCCC-CCHHHHHHHcCCCCHH
Q 014743 297 E---ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH--SRRMNLMRG-IDLKKIAEKMNGASGA 370 (419)
Q Consensus 297 ~---~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~--~~~~~~~~~-~dl~~la~~t~G~sga 370 (419)
. ...+|+||||||+|+.+||||+||||||+.|+++.|+..+|.+++..+ .+.+.+..+ +|+..+|..|.|||||
T Consensus 1765 ~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGA 1844 (2281)
T CHL00206 1765 CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNAR 1844 (2281)
T ss_pred cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHH
Confidence 3 456899999999999999999999999999999999999999998865 445555543 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 014743 371 ELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 371 di~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~ 407 (419)
||.+||++|++.|+++++..|+..||..|+.+++...
T Consensus 1845 DLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~ 1881 (2281)
T CHL00206 1845 DLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDL 1881 (2281)
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999998643
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=340.86 Aligned_cols=251 Identities=39% Similarity=0.667 Sum_probs=221.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEeCc
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGS 229 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~~s 229 (419)
-..+.|++|||++.++.++++.|..|+.+|+.|.++++.||+|+|||||||||||+.|+++|..+ ...|+.-++.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 34578999999999999999999999999999999999999999999999999999999999876 4567888999
Q ss_pred chhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 230 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 230 ~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
+..++|+|+.++.++.+|+.|+.+.|+||||||||-|++.|+.. .+..-..++..+|..|+|+++++.|+||+|||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk----qEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK----QEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch----HHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 99999999999999999999999999999999999999998542 22223345556777778888999999999999
Q ss_pred CcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Q 014743 310 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER- 387 (419)
Q Consensus 310 ~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~- 387 (419)
|++.+||+++||||||+.++||+|+.+.|.+|+.+|.++..-. ...-+..||+.|.||.|+||+++|.+|++.++++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999999999998876521 12235689999999999999999999999999863
Q ss_pred ---------------CCCCCHHHHHHHHHHHHhhhhc
Q 014743 388 ---------------RIHVTQEDFEMAVAKVMKKETE 409 (419)
Q Consensus 388 ---------------~~~vt~eD~~~Al~~v~~~~~~ 409 (419)
...|..+||-.|+.++.+....
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 2458899999999999886654
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-36 Score=330.85 Aligned_cols=250 Identities=50% Similarity=0.802 Sum_probs=224.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
..|.++|++|+|++++++.|+++|..|+.+|++|.++|+.+|+++|||||||||||++++++|++++.+++.++++++.+
T Consensus 171 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 171 KVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS 250 (733)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 234 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 234 ~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
+|.|+.+..++.+|+.|..+.|+||||||||.+++.|.... +.. -.+.+.+++..++++...++++||++||+++.
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~---~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ 326 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEV---EKRVVAQLLTLMDGLKGRGRVIVIGATNRPDA 326 (733)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chH---HHHHHHHHHHHhhccccCCCEEEEeecCChhh
Confidence 99999999999999999999999999999999998874321 111 23445566666666666778999999999999
Q ss_pred hhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Q 014743 314 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER------ 387 (419)
Q Consensus 314 ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~------ 387 (419)
+|++++++|||+..++|+.|+.++|.+|++.+.+.+.+..++++..++..|+||+|+|+..+|++|++.++++.
T Consensus 327 ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~ 406 (733)
T TIGR01243 327 LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKI 406 (733)
T ss_pred cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999888889999999999999999999999999999887652
Q ss_pred -------------CCCCCHHHHHHHHHHHHhhh
Q 014743 388 -------------RIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 388 -------------~~~vt~eD~~~Al~~v~~~~ 407 (419)
...++.+||..|+..+.++.
T Consensus 407 ~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 407 NFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccccchhcccccccHHHHHHHHhhccccc
Confidence 23588999999999887654
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-37 Score=310.12 Aligned_cols=261 Identities=36% Similarity=0.579 Sum_probs=231.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
....-+++.|+||+|++.+++.+.+++.+|+.+|++|..+- .+++++||.||||+|||+|++|+|.+.++.|+.++.+.
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHH
Confidence 34567889999999999999999999999999999998544 46689999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc--CCCeEEEEEe
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA--SNKIKVLMAT 308 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~--~~~v~VI~tT 308 (419)
+.++|+|++++.++.+|..|+..+|+||||||+|.++..|.+ ..+....+...++|.+.++... .++|+||+||
T Consensus 222 LtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~----~e~e~srr~ktefLiq~~~~~s~~~drvlvigaT 297 (428)
T KOG0740|consen 222 LTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD----NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT 297 (428)
T ss_pred hhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC----cccccchhhhhHHHhhhccccCCCCCeEEEEecC
Confidence 999999999999999999999999999999999999999943 2455566788888888776543 4589999999
Q ss_pred CCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhc-ccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 014743 309 NRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM-NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER 387 (419)
Q Consensus 309 n~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~-~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~ 387 (419)
|+|+.+|.+++| ||-+.++||+|+.+.|..++..++..- ....+.|+..|++.|+||||+||.++|.+|++--++..
T Consensus 298 N~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 298 NRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred CCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 999999999999 999999999999999999999988766 44566889999999999999999999999987655542
Q ss_pred -------------CCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 388 -------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 388 -------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
...++..||..|++.+.+..+....+....|
T Consensus 376 ~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~ 419 (428)
T KOG0740|consen 376 GGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKW 419 (428)
T ss_pred ccchhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHH
Confidence 2468889999999999998888777666666
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.9e-33 Score=275.70 Aligned_cols=240 Identities=20% Similarity=0.231 Sum_probs=178.7
Q ss_pred CCcccc-cCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhh
Q 014743 158 STYDMI-GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 236 (419)
Q Consensus 158 ~~~~~I-~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~ 236 (419)
.+|+++ +|+--...-+...+...-++ .....|+++|.+++||||||||||++|+++|++++++++.++++++.++|+
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKN--FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhh--hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 445666 66655555554444322111 122368899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhh-----CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc------------ccC
Q 014743 237 GEGSRMVRELFVMAREH-----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF------------EAS 299 (419)
Q Consensus 237 g~~~~~i~~lf~~a~~~-----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~------------~~~ 299 (419)
|++++.++++|..|+.. +||||||||||++++.|.+. ......+.+..+||+.+|+. +..
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999999864 69999999999999988531 11112223335677666542 345
Q ss_pred CCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCC----CCHHHHHHH
Q 014743 300 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNG----ASGAELKAV 375 (419)
Q Consensus 300 ~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G----~sgadi~~l 375 (419)
.+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++..+. ..|+..|+..+.| |.||--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 68999999999999999999999999965 5899999999999999988765 5788888988877 455544444
Q ss_pred HHHHHHHHHHh--------------------cCCCCCHHHHHHHHHHHHh
Q 014743 376 CTEAGMFALRE--------------------RRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 376 ~~~A~~~a~~~--------------------~~~~vt~eD~~~Al~~v~~ 405 (419)
..++...-+.+ ....+|.+.+.++=..+..
T Consensus 344 yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~ 393 (413)
T PLN00020 344 YDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVR 393 (413)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 44443332221 1245677777666555544
No 38
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.9e-27 Score=249.91 Aligned_cols=225 Identities=26% Similarity=0.362 Sum_probs=175.7
Q ss_pred eeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCC----CeEEEE
Q 014743 126 VALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP----KGVLLY 201 (419)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p----~~iLL~ 201 (419)
+...+++.++..++.++.+.+.++....+ ..|+||+++++.|.++|... +.|+..| .+|||.
T Consensus 462 vv~~~TgIPv~~l~~~e~~kll~le~~L~------~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~ 527 (786)
T COG0542 462 VVARWTGIPVAKLLEDEKEKLLNLERRLK------KRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFL 527 (786)
T ss_pred HHHHHHCCChhhhchhhHHHHHHHHHHHh------cceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEee
Confidence 55566677776666666665555544444 78999999999999999874 6676554 469999
Q ss_pred cCCCChHHHHHHHHHhccC---CceEEEeCcchhhh------------hhchhHHHHHHHHHHHHhhCCceEEecccccc
Q 014743 202 GPPGTGKTLLARAVAHHTD---CTFIRVSGSELVQK------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 266 (419)
Q Consensus 202 GPpGtGKT~LakalA~~~~---~~~i~v~~s~l~~~------------~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l 266 (419)
||+|+|||.|||+||..+- ..++++|||+|+.+ |+|+.+++ .+++.+|++++|||+||||++
T Consensus 528 GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlDEIEK- 604 (786)
T COG0542 528 GPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLDEIEK- 604 (786)
T ss_pred CCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEechhhh-
Confidence 9999999999999999884 78999999999865 77777776 899999999999999999999
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHccccccCC------CeEEEEEeCCcc----------------------------
Q 014743 267 GSARMESGSGNGDSEVQRTMLELLNQLDGFEASN------KIKVLMATNRID---------------------------- 312 (419)
Q Consensus 267 ~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~------~v~VI~tTn~~~---------------------------- 312 (419)
+|+++.++|+|+|+...-.+..+ |++||||||-..
T Consensus 605 -----------AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~ 673 (786)
T COG0542 605 -----------AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKK 673 (786)
T ss_pred -----------cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHh
Confidence 89999999999999876655544 799999999752
Q ss_pred hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc---CCCCC-------HHHHHHHcC--CCCHHHHHHHHHHHH
Q 014743 313 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL---MRGID-------LKKIAEKMN--GASGAELKAVCTEAG 380 (419)
Q Consensus 313 ~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~---~~~~d-------l~~la~~t~--G~sgadi~~l~~~A~ 380 (419)
.+.|+|++ |+|.+|.|.+.+.+...+|+..++..+.- ..++. ...|+.... .|.++-|+.++++-.
T Consensus 674 ~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 674 HFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred hCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 23588999 99999999999999999999887665321 11111 234555432 566677777766543
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.91 E-value=3e-23 Score=202.52 Aligned_cols=210 Identities=22% Similarity=0.313 Sum_probs=157.3
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCC---CeEEEEcCCCChHHHHHHHHHhcc-------CCceEEEeCcc
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP---KGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE 230 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p---~~iLL~GPpGtGKT~LakalA~~~-------~~~~i~v~~s~ 230 (419)
.+++|++++|++|.+.+.+ +..+.++.+.|+.++ .++||+||||||||++|+++|..+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 5899999999999999877 556778888888654 358999999999999999999864 23689999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 310 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~ 310 (419)
+.+.|+|+++..++.+|+.|. +.||||||+|.++..+.+ .....+....|.++++. ..++++||++++.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~-----~~~~~~vI~ag~~ 170 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMEN-----QRDDLVVIFAGYK 170 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCc
Confidence 999999998888888887763 469999999998754322 11234555556555542 2356888888764
Q ss_pred cc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc--CCCCCHHHHHHH------cCCCC-HHHHHHHH
Q 014743 311 ID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL--MRGIDLKKIAEK------MNGAS-GAELKAVC 376 (419)
Q Consensus 311 ~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~--~~~~dl~~la~~------t~G~s-gadi~~l~ 376 (419)
.. .++|+|.+ ||+.+|+|++|+.+++.+|+..++.+... ..+ ....+... .+.|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~-~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE-AEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 32 23589998 99999999999999999999999876543 222 12222222 23455 89999999
Q ss_pred HHHHHHHHH
Q 014743 377 TEAGMFALR 385 (419)
Q Consensus 377 ~~A~~~a~~ 385 (419)
.+|......
T Consensus 248 e~~~~~~~~ 256 (287)
T CHL00181 248 DRARMRQAN 256 (287)
T ss_pred HHHHHHHHH
Confidence 888765443
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-23 Score=200.31 Aligned_cols=243 Identities=24% Similarity=0.318 Sum_probs=185.7
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCC-----CCCCeEEEEcCCCChHHHHHHHHHhcc---------CCceE
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGI-----AQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFI 224 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi-----~~p~~iLL~GPpGtGKT~LakalA~~~---------~~~~i 224 (419)
-|+.++=-...++.+..++...++. ...++ ...+-+||+||||||||+|+|++|+.+ ...++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~f----sek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLF----SEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHH----HhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 4455555556777777776554433 33333 334669999999999999999999865 45689
Q ss_pred EEeCcchhhhhhchhHHHHHHHHHHHHhhC-----CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC
Q 014743 225 RVSGSELVQKYIGEGSRMVRELFVMAREHA-----PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 299 (419)
Q Consensus 225 ~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~-----psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~ 299 (419)
.+++..++++|++++.+.+..+|....... -..++|||+++|+..|....++...++..|++..+|.++|.+...
T Consensus 216 EinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~ 295 (423)
T KOG0744|consen 216 EINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY 295 (423)
T ss_pred EEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999876532 225679999999999976555556677889999999999999999
Q ss_pred CCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc---c--C-------------CCCCHHHHH
Q 014743 300 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN---L--M-------------RGIDLKKIA 361 (419)
Q Consensus 300 ~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~---~--~-------------~~~dl~~la 361 (419)
.||++++|+|-.+.+|.||.. |-|-+.++++|+...+++|++..+..+- + . .+.....++
T Consensus 296 ~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~ 373 (423)
T KOG0744|consen 296 PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILI 373 (423)
T ss_pred CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHH
Confidence 999999999999999999998 9999999999999999999987655421 0 0 011122233
Q ss_pred HH-cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhc
Q 014743 362 EK-MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 409 (419)
Q Consensus 362 ~~-t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~~ 409 (419)
.. +.|.||+-|+.|---|...- -....++.++|..|+....++...
T Consensus 374 ~~~~~gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~ea~~k~~~ 420 (423)
T KOG0744|consen 374 ELSTVGLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLEAAKKLLS 420 (423)
T ss_pred HHhhcCCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHHHHHHHhh
Confidence 33 48999999998764443222 244689999999999887765543
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.90 E-value=1.6e-22 Score=197.23 Aligned_cols=211 Identities=21% Similarity=0.316 Sum_probs=158.9
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCC---CCeEEEEcCCCChHHHHHHHHHhcc-------CCceEEEeCcc
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQ---PKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE 230 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~---p~~iLL~GPpGtGKT~LakalA~~~-------~~~~i~v~~s~ 230 (419)
++++|+++++++|.+.+.+ +..+..+.++|+.+ +.+++|+||||||||++|+++|..+ ..+++.+++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3699999999999999888 77888888999875 3489999999999999999998865 23699999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 310 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~ 310 (419)
++..|+|+++..++.+|+.|. ++||||||++.+.+.+.+ .....+.++.|+++|+. ...+++||++++.
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~ 169 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMEN-----QRDDLVVILAGYK 169 (284)
T ss_pred HhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCc
Confidence 999999998888888888763 479999999998654321 11234455566666543 2467888888764
Q ss_pred c--ch---hhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHc------CC-CCHHHHHHHHH
Q 014743 311 I--DI---LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKM------NG-ASGAELKAVCT 377 (419)
Q Consensus 311 ~--~~---ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t------~G-~sgadi~~l~~ 377 (419)
. +. ++|+|.+ ||+..|+||+++.+++..|+..++++.... ....+..+.... +. -+++.+++++.
T Consensus 170 ~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve 247 (284)
T TIGR02880 170 DRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAID 247 (284)
T ss_pred HHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 3 32 3789999 999999999999999999999998875432 111123333321 22 24799999998
Q ss_pred HHHHHHHH
Q 014743 378 EAGMFALR 385 (419)
Q Consensus 378 ~A~~~a~~ 385 (419)
.|......
T Consensus 248 ~~~~~~~~ 255 (284)
T TIGR02880 248 RARLRQAN 255 (284)
T ss_pred HHHHHHHH
Confidence 88765443
No 42
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.5e-23 Score=203.85 Aligned_cols=210 Identities=26% Similarity=0.320 Sum_probs=165.2
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhh
Q 014743 157 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 236 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~ 236 (419)
+.+|+.++--.+.++.|.+-+...+++.+-|++.|.+.-+|+|||||||||||+++-|+|++++..++-+.-++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 378899999999999999999999999999999999999999999999999999999999999999888877664322
Q ss_pred chhHHHHHHHHHHHHhhCCceEEecccccccccccCCCC--CCCC-HHHHHHHHHHHHHccccccCC--CeEEEEEeCCc
Q 014743 237 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS--GNGD-SEVQRTMLELLNQLDGFEASN--KIKVLMATNRI 311 (419)
Q Consensus 237 g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~--~~~~-~~~~~~l~~lL~~l~~~~~~~--~v~VI~tTn~~ 311 (419)
.. ++.++..+ .+-|||+|.+||.-+..+..... .+.+ ....-+|.-||+.+||+++.- -.+||+|||.+
T Consensus 275 ---~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 ---SD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred ---HH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 66666443 34479999999996543322111 1111 122346778999999988764 68899999999
Q ss_pred chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCC--CCHHHHHHHH
Q 014743 312 DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNG--ASGAELKAVC 376 (419)
Q Consensus 312 ~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G--~sgadi~~l~ 376 (419)
+.|||||+||||.|.+|+++.-+..+-..++..++.--. +..-+.++...-+| .||||+...+
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 999999999999999999999999999999988875322 22335555555554 5999987544
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.89 E-value=9.5e-23 Score=174.62 Aligned_cols=130 Identities=43% Similarity=0.709 Sum_probs=112.2
Q ss_pred EEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhC-CceEEecccccccccccCCCCC
Q 014743 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSARMESGSG 276 (419)
Q Consensus 198 iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~-psVl~iDEiD~l~~~r~~~~~~ 276 (419)
+||+||||||||++++.+|+.++.+++.++++++.+.+.+.....++.+|..+.... |+||||||+|.+++.. + .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~---~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-Q---P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-S---T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-c---c
Confidence 689999999999999999999999999999999999999999999999999999988 9999999999999876 1 1
Q ss_pred CCCHHHHHHHHHHHHHccccccC-CCeEEEEEeCCcchhhHHhcCCCceeEEEEcCC
Q 014743 277 NGDSEVQRTMLELLNQLDGFEAS-NKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 332 (419)
Q Consensus 277 ~~~~~~~~~l~~lL~~l~~~~~~-~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~ 332 (419)
.........+.+++..++..... ++++||+|||.++.+++.+++ +||+..|+||.
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 23344555566667776665444 579999999999999999998 89999999974
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=2.5e-22 Score=193.76 Aligned_cols=211 Identities=21% Similarity=0.274 Sum_probs=150.0
Q ss_pred cccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCC---CeEEEEcCCCChHHHHHHHHHhcc-------CCceEEEeCc
Q 014743 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP---KGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS 229 (419)
Q Consensus 160 ~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p---~~iLL~GPpGtGKT~LakalA~~~-------~~~~i~v~~s 229 (419)
+++++|++.+|++|++.+.++..+ ......|+.++ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 468999999999999998775443 33345666533 468999999999999999999853 3478899999
Q ss_pred chhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 230 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 230 ~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
++.+.|+|+....++++|..+. ++||||||+|.|.... ........+..++..++. ..+++++|++++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-------~~~~~~~~i~~Ll~~~e~--~~~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-------EKDFGKEAIDTLVKGMED--NRNEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-------ccchHHHHHHHHHHHHhc--cCCCEEEEecCC
Confidence 9999999999999999998774 5799999999986321 111122334445555543 235566666654
Q ss_pred Ccc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHH-------c--CCCCHHHHHH
Q 014743 310 RID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEK-------M--NGASGAELKA 374 (419)
Q Consensus 310 ~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~-------t--~G~sgadi~~ 374 (419)
..+ .++|++.+ ||+..|.||+++.+++.+|++.++...... ++.-+..++.. + ..-+++.+.+
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n 229 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRN 229 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 322 36788988 999999999999999999999888764432 11113333221 1 1235788888
Q ss_pred HHHHHHHHHHH
Q 014743 375 VCTEAGMFALR 385 (419)
Q Consensus 375 l~~~A~~~a~~ 385 (419)
++..|......
T Consensus 230 ~~e~a~~~~~~ 240 (261)
T TIGR02881 230 IIEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHHH
Confidence 88887765543
No 45
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1e-21 Score=192.52 Aligned_cols=234 Identities=26% Similarity=0.383 Sum_probs=165.2
Q ss_pred CCCCcccccCcHHHHHHHHHH---hhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 156 PDSTYDMIGGLDQQIKEIKEV---IELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~---i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
+...+++|+-.....+.|.+. -..--.|. .|=++||||||||||||+.||-||...+..+-.+.+.++.
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~--------apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA 421 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKKHQ--------APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA 421 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccccc--------chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc
Confidence 334466776555544444443 22322232 2336799999999999999999999999988888877754
Q ss_pred hhhhchhHHHHHHHHHHHHhhCC-ceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 233 QKYIGEGSRMVRELFVMAREHAP-SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 233 ~~~~g~~~~~i~~lf~~a~~~~p-sVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
-. -.+.-..+.++|+-+..... -+|||||.|+++..|.. +......+..|+.+|-.- -+.+..++++++||+|
T Consensus 422 Pl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk---tymSEaqRsaLNAlLfRT--GdqSrdivLvlAtNrp 495 (630)
T KOG0742|consen 422 PL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK---TYMSEAQRSALNALLFRT--GDQSRDIVLVLATNRP 495 (630)
T ss_pred cc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch---hhhcHHHHHHHHHHHHHh--cccccceEEEeccCCc
Confidence 32 12344568899998876543 48899999999998854 345555666677666322 1356689999999999
Q ss_pred chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-----------------------CCCC----HHHHHHHc
Q 014743 312 DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-----------------------RGID----LKKIAEKM 364 (419)
Q Consensus 312 ~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-----------------------~~~d----l~~la~~t 364 (419)
.++|.++-. |||.+|+||+|..++|.++|..|+.+.-.. ...+ +.+.|+.|
T Consensus 496 gdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkT 573 (630)
T KOG0742|consen 496 GDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKT 573 (630)
T ss_pred cchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhc
Confidence 999999988 999999999999999999999887653210 0111 56789999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 365 NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 365 ~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
+||||++|..|+.---..+.-+..+.++..-|+..+..-+.
T Consensus 574 eGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 574 EGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQ 614 (630)
T ss_pred cCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 99999999999843222233344566776666666554433
No 46
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.1e-22 Score=204.79 Aligned_cols=232 Identities=25% Similarity=0.259 Sum_probs=185.6
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----CCceEEEeCcchhhhhh
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGSELVQKYI 236 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~s~l~~~~~ 236 (419)
.+++-..+.+++..+....| +-.+.++||+||+|||||.|+++++.++ .+++..++|+.+..+..
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 56666677777766644444 3456789999999999999999999976 46788899999988888
Q ss_pred chhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcc-cccc-CCCeEEEEEeCCcchh
Q 014743 237 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD-GFEA-SNKIKVLMATNRIDIL 314 (419)
Q Consensus 237 g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~-~~~~-~~~v~VI~tTn~~~~l 314 (419)
....+.++.+|..|.+++|+||++|++|.|++...+ .++.+....+.+..+++++- .+.. +..+.||++.+....+
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~--e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl 554 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN--ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTL 554 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc--cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhc
Confidence 888889999999999999999999999999983322 23344455555555554432 2222 3456899999999999
Q ss_pred hHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc---cCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----c
Q 014743 315 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN---LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE----R 387 (419)
Q Consensus 315 d~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~---~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~----~ 387 (419)
+|-|..|++|+.++.+|+|+..+|.+||+..+.+.. ..++ +.-++..|+||...|+..++.+|...|..+ +
T Consensus 555 ~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~d--Ld~ls~~TEGy~~~DL~ifVeRai~~a~leris~~ 632 (952)
T KOG0735|consen 555 NPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDD--LDFLSVKTEGYLATDLVIFVERAIHEAFLERISNG 632 (952)
T ss_pred ChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHH--HHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999998876644 3344 444999999999999999999999998843 2
Q ss_pred CCCCCHHHHHHHHHHHHhhh
Q 014743 388 RIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 388 ~~~vt~eD~~~Al~~v~~~~ 407 (419)
...+|.+||.++++...|..
T Consensus 633 ~klltke~f~ksL~~F~P~a 652 (952)
T KOG0735|consen 633 PKLLTKELFEKSLKDFVPLA 652 (952)
T ss_pred cccchHHHHHHHHHhcChHH
Confidence 34799999999999988744
No 47
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.88 E-value=2.2e-21 Score=212.95 Aligned_cols=222 Identities=25% Similarity=0.396 Sum_probs=154.3
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh--------
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV-------- 232 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~-------- 232 (419)
+++.|++++++.|.+++..+... +-..+..+||+||||||||++|+++|+.++.++++++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 57999999999999988754222 112345799999999999999999999999999999765432
Q ss_pred -hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHc--cccc--------cCCC
Q 014743 233 -QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL--DGFE--------ASNK 301 (419)
Q Consensus 233 -~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l--~~~~--------~~~~ 301 (419)
..|+|...+.+.+.|..+....| ||||||||++.+... + +..+.|+++|+.. ..+. ..++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~------~--~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR------G--DPASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC------C--CHHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 35788888888888888766666 899999999875321 1 2345677777531 1111 1257
Q ss_pred eEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhh-----cccCC---CCC---HHHHHHH-cCCCCH
Q 014743 302 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR-----MNLMR---GID---LKKIAEK-MNGASG 369 (419)
Q Consensus 302 v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~-----~~~~~---~~d---l~~la~~-t~G~sg 369 (419)
+++|+|||.++.++++|++ ||+ .|.|+.|+.+++.+|++.++.. ..+.. .++ +..|+.. +..+..
T Consensus 464 v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~ 540 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGV 540 (775)
T ss_pred EEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCC
Confidence 8999999999999999999 995 7899999999999999877621 11211 122 3444443 233444
Q ss_pred HHHH----HHHHHHHHHHHHhc--------CCCCCHHHHHHHHH
Q 014743 370 AELK----AVCTEAGMFALRER--------RIHVTQEDFEMAVA 401 (419)
Q Consensus 370 adi~----~l~~~A~~~a~~~~--------~~~vt~eD~~~Al~ 401 (419)
++|+ .+|+.++...+..+ ...++.++++.-+-
T Consensus 541 R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 541 RNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 5554 55655544433222 15778777666543
No 48
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.3e-21 Score=201.01 Aligned_cols=237 Identities=27% Similarity=0.452 Sum_probs=191.5
Q ss_pred cccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHH
Q 014743 162 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSR 241 (419)
Q Consensus 162 ~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~ 241 (419)
..-+++..+..+..++..+ +.|. ..++.-...+||+|+||||||++++++|.+++.+++.++|.++.....+..+.
T Consensus 402 ~~~~~~~~~~~l~~vl~p~-~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~et 477 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQ-KQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTET 477 (953)
T ss_pred CCccchHHHHHHHHHhCcc-cCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHH
Confidence 3456777777666655432 3322 12233445799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc-cCCCeEEEEEeCCcchhhHHhcC
Q 014743 242 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-ASNKIKVLMATNRIDILDQALLR 320 (419)
Q Consensus 242 ~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~-~~~~v~VI~tTn~~~~ld~allr 320 (419)
.+...|.+|+..+|+|||+-++|.|...+. ++.+..+...+..++. .+.+. ....++||++|++.+.+++.+++
T Consensus 478 kl~~~f~~a~~~~pavifl~~~dvl~id~d----gged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~ 552 (953)
T KOG0736|consen 478 KLQAIFSRARRCSPAVLFLRNLDVLGIDQD----GGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS 552 (953)
T ss_pred HHHHHHHHHhhcCceEEEEeccceeeecCC----CchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH
Confidence 999999999999999999999999985442 2345555555655554 22222 45689999999999999999998
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---c----------
Q 014743 321 PGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE---R---------- 387 (419)
Q Consensus 321 ~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~---~---------- 387 (419)
-|-++|.++.|++++|.+||+.++....+.+++.+..+|.+|.||+.+|+..++..+...+..+ .
T Consensus 553 --~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~ 630 (953)
T KOG0736|consen 553 --LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEED 630 (953)
T ss_pred --hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcc
Confidence 8888999999999999999999999999999999999999999999999999987763333221 1
Q ss_pred -------CCCCCHHHHHHHHHHHHhhhhc
Q 014743 388 -------RIHVTQEDFEMAVAKVMKKETE 409 (419)
Q Consensus 388 -------~~~vt~eD~~~Al~~v~~~~~~ 409 (419)
...++++||..|+.++.+..+.
T Consensus 631 ~~~~~~~~~~l~~edf~kals~~~~~fs~ 659 (953)
T KOG0736|consen 631 EGELCAAGFLLTEEDFDKALSRLQKEFSD 659 (953)
T ss_pred ccccccccceecHHHHHHHHHHHHHhhhh
Confidence 2579999999999998876644
No 49
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.1e-20 Score=197.98 Aligned_cols=222 Identities=48% Similarity=0.735 Sum_probs=198.4
Q ss_pred cccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceE
Q 014743 179 LPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSII 258 (419)
Q Consensus 179 ~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl 258 (419)
.|+.+++.+..+++.++.+++++||||||||++++++|.+ +..++.+++++..++|.|..+..++.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4788999999999999999999999999999999999999 766788999999999999999999999999999999999
Q ss_pred EecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHH
Q 014743 259 FMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR 338 (419)
Q Consensus 259 ~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r 338 (419)
++||+|.+.+.+.. . ......++..+++..++++. ...+++++.||++..+++++.++|||+..+.++.|+...+
T Consensus 81 ~~d~~~~~~~~~~~-~---~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (494)
T COG0464 81 FIDEIDALAPKRSS-D---QGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155 (494)
T ss_pred eechhhhcccCccc-c---ccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHH
Confidence 99999999998865 1 12233455666666666666 4448888899999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhh
Q 014743 339 LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER------RIHVTQEDFEMAVAKVMKK 406 (419)
Q Consensus 339 ~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~------~~~vt~eD~~~Al~~v~~~ 406 (419)
.+|+..+...+....+.++..++..+.||+++|+..+|.++.+.+.++. ...++.+|+..++..+.+.
T Consensus 156 ~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 156 LEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 9999999999888888999999999999999999999999999888775 4579999999999998774
No 50
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.86 E-value=2.6e-20 Score=205.22 Aligned_cols=234 Identities=18% Similarity=0.308 Sum_probs=170.3
Q ss_pred cccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCC-
Q 014743 115 IDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIA- 193 (419)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~- 193 (419)
|+...|.. |...++++++..+..++.+....+....+ +.|+||+++++.|.++|... +.|+.
T Consensus 529 v~~~~i~~---vv~~~tgip~~~~~~~e~~~l~~l~~~L~------~~v~GQ~~Av~~v~~~i~~~--------~~gl~~ 591 (852)
T TIGR03345 529 VDAQAVAE---VVADWTGIPVGRMVRDEIEAVLSLPDRLA------ERVIGQDHALEAIAERIRTA--------RAGLED 591 (852)
T ss_pred ecHHHHHH---HHHHHHCCCchhhchhHHHHHHHHHHHhc------CeEcChHHHHHHHHHHHHHH--------hcCCCC
Confidence 45555543 66678888888877777666555544433 78999999999999999764 23332
Q ss_pred --CCC-eEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh------------hhchhHHHHHHHHHHHHhhCC
Q 014743 194 --QPK-GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK------------YIGEGSRMVRELFVMAREHAP 255 (419)
Q Consensus 194 --~p~-~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~------------~~g~~~~~i~~lf~~a~~~~p 255 (419)
.|. .+||+||||||||.+|++||..+ ...+++++++++... |+|+.++. .+.+..+.+++
T Consensus 592 ~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~ 669 (852)
T TIGR03345 592 PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPY 669 (852)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCC
Confidence 244 48999999999999999999987 457999999988543 55554443 46677788999
Q ss_pred ceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC------CCeEEEEEeCCcc-----------------
Q 014743 256 SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS------NKIKVLMATNRID----------------- 312 (419)
Q Consensus 256 sVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~------~~v~VI~tTn~~~----------------- 312 (419)
+||+|||||+ .|+.+.+.|+++++...-.+.. .+++||+|||...
T Consensus 670 svvllDEiek------------a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~ 737 (852)
T TIGR03345 670 SVVLLDEVEK------------AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPE 737 (852)
T ss_pred cEEEEechhh------------cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchH
Confidence 9999999998 7889999999999875422222 4799999999632
Q ss_pred ------------hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhc--------ccCCCCC---HHHHHHHcCC--C
Q 014743 313 ------------ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM--------NLMRGID---LKKIAEKMNG--A 367 (419)
Q Consensus 313 ------------~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~--------~~~~~~d---l~~la~~t~G--~ 367 (419)
.+.|+|++ |++ +|.|.+++.++..+|+...+..+ ++.-.++ ...|+....+ |
T Consensus 738 ~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~ 814 (852)
T TIGR03345 738 ALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVES 814 (852)
T ss_pred HHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCC
Confidence 24578888 997 89999999999999998776542 1111122 4456666533 5
Q ss_pred CHHHHHHHHHHHHHH
Q 014743 368 SGAELKAVCTEAGMF 382 (419)
Q Consensus 368 sgadi~~l~~~A~~~ 382 (419)
.++.+..+++.-...
T Consensus 815 GAR~L~r~Ie~~i~~ 829 (852)
T TIGR03345 815 GARNIDAILNQTLLP 829 (852)
T ss_pred ChHHHHHHHHHHHHH
Confidence 677888777664433
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.84 E-value=5.5e-20 Score=200.88 Aligned_cols=224 Identities=24% Similarity=0.324 Sum_probs=170.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCceE
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFI 224 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~i 224 (419)
..+..+++++|+++.++.+.+.+.. ....+++|+||||||||++++++|..+ +..++
T Consensus 176 ~r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~ 242 (731)
T TIGR02639 176 AKNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIY 242 (731)
T ss_pred HhcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEE
Confidence 3455678999999999998877755 345688999999999999999999876 67789
Q ss_pred EEeCcchh--hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCe
Q 014743 225 RVSGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 302 (419)
Q Consensus 225 ~v~~s~l~--~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 302 (419)
.++++.++ .+|.|+.+..++.+|+.+.++.|+||||||+|.|++.+... +++.+..+.|...| .++.+
T Consensus 243 ~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---~~~~~~~~~L~~~l-------~~g~i 312 (731)
T TIGR02639 243 SLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS---GGSMDASNLLKPAL-------SSGKL 312 (731)
T ss_pred EecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC---CccHHHHHHHHHHH-------hCCCe
Confidence 99998887 57999999999999999988889999999999998765321 22334556655544 34679
Q ss_pred EEEEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-----CCCCCHHHHHHHcCCCCH---
Q 014743 303 KVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-----MRGIDLKKIAEKMNGASG--- 369 (419)
Q Consensus 303 ~VI~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-----~~~~dl~~la~~t~G~sg--- 369 (419)
.+|++||..+ ..|++|.| ||. .|.|+.|+.+++.+||+........ ..+..+..++..+..|-+
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~ 389 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRF 389 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccccc
Confidence 9999999744 57999999 997 7999999999999999976654321 122335667777766654
Q ss_pred --HHHHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHH
Q 014743 370 --AELKAVCTEAGMFALRE----RRIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 370 --adi~~l~~~A~~~a~~~----~~~~vt~eD~~~Al~~v~ 404 (419)
.---.++.+|+.....+ ....|+.+|+..++..+.
T Consensus 390 ~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 390 LPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred CCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 33345666665433211 235699999999999885
No 52
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.84 E-value=6.2e-20 Score=202.66 Aligned_cols=234 Identities=18% Similarity=0.279 Sum_probs=167.0
Q ss_pred cccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCC
Q 014743 115 IDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQ 194 (419)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~ 194 (419)
|+...+.. +...++++++..+..++.+.+..+....+ +.|+||+++++.|..+|... +.|+..
T Consensus 472 v~~~~i~~---~~~~~tgip~~~~~~~~~~~l~~l~~~L~------~~v~GQ~~ai~~l~~~i~~~--------~~gl~~ 534 (821)
T CHL00095 472 VTEEDIAE---IVSAWTGIPVNKLTKSESEKLLHMEETLH------KRIIGQDEAVVAVSKAIRRA--------RVGLKN 534 (821)
T ss_pred cCHHHHHH---HHHHHHCCCchhhchhHHHHHHHHHHHhc------CcCcChHHHHHHHHHHHHHH--------hhcccC
Confidence 45555543 66677788887777666655544444333 78999999999999999753 334322
Q ss_pred ----CCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh-----h-------hhchhHHHHHHHHHHHHhhCC
Q 014743 195 ----PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ-----K-------YIGEGSRMVRELFVMAREHAP 255 (419)
Q Consensus 195 ----p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~-----~-------~~g~~~~~i~~lf~~a~~~~p 255 (419)
...+||+||||||||++|++||..+ +.++++++++++.. + |+|..+. ..+.+.++.+++
T Consensus 535 ~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~--~~l~~~~~~~p~ 612 (821)
T CHL00095 535 PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG--GQLTEAVRKKPY 612 (821)
T ss_pred CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCcc--chHHHHHHhCCC
Confidence 2458999999999999999999976 46799999998743 2 3343332 367788888888
Q ss_pred ceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc------CCCeEEEEEeCCcch----------------
Q 014743 256 SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA------SNKIKVLMATNRIDI---------------- 313 (419)
Q Consensus 256 sVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~------~~~v~VI~tTn~~~~---------------- 313 (419)
+||+|||+|+ .++++.+.|++++++..-.+. ..+++||+|||....
T Consensus 613 ~VvllDeiek------------a~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~ 680 (821)
T CHL00095 613 TVVLFDEIEK------------AHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSEN 680 (821)
T ss_pred eEEEECChhh------------CCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCccccc
Confidence 9999999999 688999999999987542222 258999999996421
Q ss_pred ---------------------hhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc-------cCCCCC---HHHHHH
Q 014743 314 ---------------------LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN-------LMRGID---LKKIAE 362 (419)
Q Consensus 314 ---------------------ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~-------~~~~~d---l~~la~ 362 (419)
+.|+|++ |+|.+|.|.+.+.++..+|++..+..+. +.-.++ ...|+.
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~ 758 (821)
T CHL00095 681 QLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIE 758 (821)
T ss_pred ccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHH
Confidence 2367888 9999999999999999999987765431 111111 345666
Q ss_pred H--cCCCCHHHHHHHHHHHHH
Q 014743 363 K--MNGASGAELKAVCTEAGM 381 (419)
Q Consensus 363 ~--t~G~sgadi~~l~~~A~~ 381 (419)
. ...|.++.|+.+++.-..
T Consensus 759 ~~~~~~~GAR~l~r~i~~~i~ 779 (821)
T CHL00095 759 EGYNPLYGARPLRRAIMRLLE 779 (821)
T ss_pred hcCCCCCChhhHHHHHHHHHH
Confidence 4 224556777777765443
No 53
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.84 E-value=2.4e-19 Score=198.62 Aligned_cols=239 Identities=22% Similarity=0.328 Sum_probs=170.2
Q ss_pred CccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCC
Q 014743 113 KSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGI 192 (419)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi 192 (419)
..|+.+.+.. |...++++++..+...+.+.+..+....+ ..|+|++.+++.+.+.|... +.|+
T Consensus 526 ~~v~~~~i~~---v~~~~tgip~~~~~~~e~~~l~~l~~~l~------~~v~GQ~~av~~v~~~i~~~--------~~gl 588 (852)
T TIGR03346 526 EEVTAEEIAE---VVSRWTGIPVSKMLEGEREKLLHMEEVLH------ERVVGQDEAVEAVSDAIRRS--------RAGL 588 (852)
T ss_pred CCcCHHHHHH---HHHHhcCCCcccccHHHHHHHHHHHHHhh------cccCCChHHHHHHHHHHHHH--------hccC
Confidence 3455555553 66667788777776665555444433222 68999999999999999863 2333
Q ss_pred C----CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh------------hhchhHHHHHHHHHHHHhh
Q 014743 193 A----QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK------------YIGEGSRMVRELFVMAREH 253 (419)
Q Consensus 193 ~----~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~------------~~g~~~~~i~~lf~~a~~~ 253 (419)
. |...+||+||||||||++|++||..+ +.++++++|+++... |+|+.++ ..+....+.+
T Consensus 589 ~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~--g~l~~~v~~~ 666 (852)
T TIGR03346 589 SDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG--GQLTEAVRRK 666 (852)
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccc--cHHHHHHHcC
Confidence 2 34569999999999999999999876 568999999987432 2333332 3566777788
Q ss_pred CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc------CCCeEEEEEeCCcch--------------
Q 014743 254 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA------SNKIKVLMATNRIDI-------------- 313 (419)
Q Consensus 254 ~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~------~~~v~VI~tTn~~~~-------------- 313 (419)
+.+||||||||+ .++.+++.|+++|++..-.+. ..+++||+|||....
T Consensus 667 p~~vlllDeiek------------a~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~ 734 (852)
T TIGR03346 667 PYSVVLFDEVEK------------AHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEM 734 (852)
T ss_pred CCcEEEEecccc------------CCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHH
Confidence 889999999998 678999999999987542222 247889999998422
Q ss_pred -----------hhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc-------cCCCCC---HHHHHHHcC--CCCHH
Q 014743 314 -----------LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN-------LMRGID---LKKIAEKMN--GASGA 370 (419)
Q Consensus 314 -----------ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~-------~~~~~d---l~~la~~t~--G~sga 370 (419)
+.|+|++ |||.++.|.+++.+...+|+...+..+. +.-.++ +..|+.... .+..+
T Consensus 735 ~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR 812 (852)
T TIGR03346 735 REAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGAR 812 (852)
T ss_pred HHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCch
Confidence 3467887 9999999999999999999987665321 111222 445666532 56678
Q ss_pred HHHHHHHHHHHHHH
Q 014743 371 ELKAVCTEAGMFAL 384 (419)
Q Consensus 371 di~~l~~~A~~~a~ 384 (419)
.|+.++++.....+
T Consensus 813 ~L~~~i~~~i~~~l 826 (852)
T TIGR03346 813 PLKRAIQREIENPL 826 (852)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888877665544
No 54
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.83 E-value=2.9e-19 Score=197.40 Aligned_cols=237 Identities=22% Similarity=0.307 Sum_probs=164.7
Q ss_pred CccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCC
Q 014743 113 KSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGI 192 (419)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi 192 (419)
..|+.+.+.. |...++++++..+..++.+.+..+.... .+.|+|++.+++.|.+.|... +.|+
T Consensus 529 ~~v~~~~i~~---vv~~~tgip~~~~~~~~~~~l~~l~~~l------~~~viGQ~~ai~~l~~~i~~~--------~~gl 591 (857)
T PRK10865 529 NKVTDAEIAE---VLARWTGIPVSRMLESEREKLLRMEQEL------HHRVIGQNEAVEAVSNAIRRS--------RAGL 591 (857)
T ss_pred CccCHHHHHH---HHHHHHCCCchhhhhhHHHHHHHHHHHh------CCeEeCCHHHHHHHHHHHHHH--------Hhcc
Confidence 3455555553 6777888888887777666554443332 278999999999999999763 2333
Q ss_pred CCC----CeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh-----hh-------chhHHHHHHHHHHHHhh
Q 014743 193 AQP----KGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK-----YI-------GEGSRMVRELFVMAREH 253 (419)
Q Consensus 193 ~~p----~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~-----~~-------g~~~~~i~~lf~~a~~~ 253 (419)
..| ..+||+||||||||++|++||..+ +.++++++|+++... .+ |...+ ..+.+..+..
T Consensus 592 ~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~--g~l~~~v~~~ 669 (857)
T PRK10865 592 SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG--GYLTEAVRRR 669 (857)
T ss_pred cCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh--HHHHHHHHhC
Confidence 322 468999999999999999999876 457999999987542 22 33222 2355556677
Q ss_pred CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc------cCCCeEEEEEeCCcc---------------
Q 014743 254 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE------ASNKIKVLMATNRID--------------- 312 (419)
Q Consensus 254 ~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~------~~~~v~VI~tTn~~~--------------- 312 (419)
+++||||||+++ .++.+++.++++++...-.+ ...+++||+|||...
T Consensus 670 p~~vLllDEiek------------a~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~ 737 (857)
T PRK10865 670 PYSVILLDEVEK------------AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHM 737 (857)
T ss_pred CCCeEEEeehhh------------CCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHH
Confidence 779999999998 67889999999998653222 124678999999742
Q ss_pred ----------hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhc-------ccCCCCC---HHHHHHHc--CCCCHH
Q 014743 313 ----------ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM-------NLMRGID---LKKIAEKM--NGASGA 370 (419)
Q Consensus 313 ----------~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~-------~~~~~~d---l~~la~~t--~G~sga 370 (419)
.+.|+|++ |+|.++.|.+++.+....|++.++..+ ++.-.++ +..|+... ..|..+
T Consensus 738 ~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GAR 815 (857)
T PRK10865 738 KELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGAR 815 (857)
T ss_pred HHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChH
Confidence 23478888 999999999999999999998776553 1211233 23344321 123357
Q ss_pred HHHHHHHHHHHH
Q 014743 371 ELKAVCTEAGMF 382 (419)
Q Consensus 371 di~~l~~~A~~~ 382 (419)
.|+.+++.-...
T Consensus 816 pL~r~I~~~i~~ 827 (857)
T PRK10865 816 PLKRAIQQQIEN 827 (857)
T ss_pred HHHHHHHHHHHH
Confidence 777777665443
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=1.7e-19 Score=167.18 Aligned_cols=197 Identities=23% Similarity=0.316 Sum_probs=133.6
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
....+.++++++||++.+..+.-++...... -.+..++|||||||+||||||+.||++++.+|..++++.+-
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 3567788999999999999988777653211 13567899999999999999999999999999998886532
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc--c---cc--------C
Q 014743 233 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG--F---EA--------S 299 (419)
Q Consensus 233 ~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~--~---~~--------~ 299 (419)
. .+ .+..++... ....|||||||+.+ +...+..|+..+....- + .. -
T Consensus 88 k--~~----dl~~il~~l--~~~~ILFIDEIHRl------------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 88 K--AG----DLAAILTNL--KEGDILFIDEIHRL------------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp S--CH----HHHHHHHT----TT-EEEECTCCC--------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred h--HH----HHHHHHHhc--CCCcEEEEechhhc------------cHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 1 12 222333333 34579999999995 46678888888875321 1 11 1
Q ss_pred CCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCC-CCHHHHHHHcCCCCHHHHHHHHHH
Q 014743 300 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLKKIAEKMNGASGAELKAVCTE 378 (419)
Q Consensus 300 ~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~G~sgadi~~l~~~ 378 (419)
.+.++|+||++...+.+.|+. ||.....+..++.++..+|++.....+++.-+ ....+||.++.| +++-...++++
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 268899999999999999998 99988899999999999999977666655322 225688999998 88888888776
Q ss_pred HH
Q 014743 379 AG 380 (419)
Q Consensus 379 A~ 380 (419)
+.
T Consensus 225 vr 226 (233)
T PF05496_consen 225 VR 226 (233)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.83 E-value=6.2e-19 Score=175.58 Aligned_cols=220 Identities=21% Similarity=0.239 Sum_probs=162.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
.++.+.+|++++|+++.++.+..++..... .-.++.+++||||||||||++|+++|++++..+..++++.+.
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 356677899999999999999988864211 114567899999999999999999999999888777665432
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc-------cc------cC
Q 014743 233 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG-------FE------AS 299 (419)
Q Consensus 233 ~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~-------~~------~~ 299 (419)
. ...+..++... ..++||||||||.+.. .....+..+++.... .. .-
T Consensus 89 ~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~------------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 89 K------PGDLAAILTNL--EEGDVLFIDEIHRLSP------------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred C------hHHHHHHHHhc--ccCCEEEEecHhhcch------------HHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 1 12233333322 3578999999999632 233344444443210 00 01
Q ss_pred CCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHH
Q 014743 300 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTE 378 (419)
Q Consensus 300 ~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~ 378 (419)
.++.+|++||++..+++.+.+ ||+..+.|++|+.+++.+|++......++. ++.-+..|+..+.| +++.+..++..
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~ 225 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRR 225 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHH
Confidence 347889999999999999988 999999999999999999999887765442 22236788989888 55888889988
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHH
Q 014743 379 AGMFALRERRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 379 A~~~a~~~~~~~vt~eD~~~Al~~v 403 (419)
+...+...+...++.+++..++..+
T Consensus 226 ~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 226 VRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 8877776666789999999998765
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.83 E-value=5.1e-20 Score=199.76 Aligned_cols=201 Identities=19% Similarity=0.284 Sum_probs=146.0
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCC----CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh---
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGI----AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ--- 233 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi----~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~--- 233 (419)
..|+||+++++.|.++|... +.|+ +|...+||+||||||||++|+++|..++.++++++|+++..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~ 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhccccc
Confidence 57999999999999999753 2233 23356999999999999999999999999999999998743
Q ss_pred --hhhchhHHHH-----HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc------CC
Q 014743 234 --KYIGEGSRMV-----RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA------SN 300 (419)
Q Consensus 234 --~~~g~~~~~i-----~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~------~~ 300 (419)
+++|...+.+ ..+.+..+.++++||||||||+ .++++++.|+++|++..-.+. ..
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEiek------------a~~~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK------------AHPDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhh------------hhHHHHHHHHHHHhcCeeecCCCceecCC
Confidence 3444322221 2455667778889999999999 578899999999986532222 24
Q ss_pred CeEEEEEeCCc-------------------------chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhc------
Q 014743 301 KIKVLMATNRI-------------------------DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM------ 349 (419)
Q Consensus 301 ~v~VI~tTn~~-------------------------~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~------ 349 (419)
+++||+|||.. ..+.|+|++ |+|.+|.|++++.++..+|+..++..+
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~ 675 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQ 675 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999943 135688888 999999999999999999998776532
Q ss_pred -ccCCCCC---HHHHHHHc--CCCCHHHHHHHHHHHHHHH
Q 014743 350 -NLMRGID---LKKIAEKM--NGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 350 -~~~~~~d---l~~la~~t--~G~sgadi~~l~~~A~~~a 383 (419)
++.-.++ +..|+... ..|.++.|+.+++.-....
T Consensus 676 ~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~ 715 (758)
T PRK11034 676 KGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_pred CCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHH
Confidence 1111111 33455432 2455677777766544433
No 58
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.82 E-value=8.6e-19 Score=172.46 Aligned_cols=214 Identities=18% Similarity=0.217 Sum_probs=154.6
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhch
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 238 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~ 238 (419)
+|++++|++++++.|..++...... -..+.+++|+||||||||++|+++|++++..+..+.++.+...
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~---- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP---- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc----
Confidence 6789999999999999988643111 1356789999999999999999999999888766665432211
Q ss_pred hHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc-------c------ccCCCeEEE
Q 014743 239 GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG-------F------EASNKIKVL 305 (419)
Q Consensus 239 ~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~-------~------~~~~~v~VI 305 (419)
..+...+.. ...+.||||||++.+.+ .....+..+++.... . ....++++|
T Consensus 70 --~~l~~~l~~--~~~~~vl~iDEi~~l~~------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 70 --GDLAAILTN--LEEGDVLFIDEIHRLSP------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred --hhHHHHHHh--cccCCEEEEehHhhhCH------------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 112222222 23568999999999632 233445555543220 0 011347899
Q ss_pred EEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 014743 306 MATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFAL 384 (419)
Q Consensus 306 ~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~ 384 (419)
++||++..+++++++ ||...+.|++|+.+++.+|++......... ++..+..++..+.| .++.+..++..+...|.
T Consensus 134 ~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~ 210 (305)
T TIGR00635 134 GATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQ 210 (305)
T ss_pred EecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHH
Confidence 999999999999998 999899999999999999999877654332 22236678899888 45778888888777776
Q ss_pred HhcCCCCCHHHHHHHHHHH
Q 014743 385 RERRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 385 ~~~~~~vt~eD~~~Al~~v 403 (419)
..+...++.+++..++..+
T Consensus 211 ~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 211 VRGQKIINRDIALKALEML 229 (305)
T ss_pred HcCCCCcCHHHHHHHHHHh
Confidence 5566679999999998874
No 59
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.81 E-value=8.2e-20 Score=199.49 Aligned_cols=199 Identities=24% Similarity=0.327 Sum_probs=148.9
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCC---C-CeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh--
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQ---P-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-- 234 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~---p-~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~-- 234 (419)
..|.||+++++.|.+++... +.|+.. | ..+||+||||||||++|++||..++.++++++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 67999999999999998753 444432 3 358999999999999999999999999999999987542
Q ss_pred ----------hhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc------
Q 014743 235 ----------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA------ 298 (419)
Q Consensus 235 ----------~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~------ 298 (419)
|+|..++ +.+.+.++.++++||||||||+ .++++++.|++++++..-.+.
T Consensus 526 ~~~lig~~~gyvg~~~~--~~l~~~~~~~p~~VvllDEiek------------a~~~~~~~Ll~~ld~g~~~d~~g~~vd 591 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQG--GLLTEAVRKHPHCVLLLDEIEK------------AHPDIYNILLQVMDYATLTDNNGRKAD 591 (731)
T ss_pred HHHHhcCCCCCcccchh--hHHHHHHHhCCCeEEEEechhh------------cCHHHHHHHHHhhccCeeecCCCcccC
Confidence 3333332 3567777888999999999998 678899999999987532222
Q ss_pred CCCeEEEEEeCCcc-------------------------hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc---
Q 014743 299 SNKIKVLMATNRID-------------------------ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN--- 350 (419)
Q Consensus 299 ~~~v~VI~tTn~~~-------------------------~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~--- 350 (419)
..+++||+|||... .+.|+|++ |||.+|.|.+.+.++..+|++..+..+.
T Consensus 592 ~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l 669 (731)
T TIGR02639 592 FRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQL 669 (731)
T ss_pred CCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 24788999998752 24678887 9999999999999999999988775421
Q ss_pred ------cC-CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Q 014743 351 ------LM-RGIDLKKIAEK--MNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 351 ------~~-~~~dl~~la~~--t~G~sgadi~~l~~~A~~~a 383 (419)
+. ++--+..|+.. ...|.++.|+.+++......
T Consensus 670 ~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~ 711 (731)
T TIGR02639 670 NEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKP 711 (731)
T ss_pred HhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHH
Confidence 10 11113456654 33566778887776654443
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.81 E-value=6.5e-19 Score=191.17 Aligned_cols=223 Identities=26% Similarity=0.368 Sum_probs=169.5
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCceEEE
Q 014743 157 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRV 226 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~i~v 226 (419)
.-.++.++|.++.++.+.+.+.. ..+.++||+||||||||++|+++|... ++.++.+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 44567899999999999998765 245677999999999999999999753 5566777
Q ss_pred eCcchh--hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEE
Q 014743 227 SGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 304 (419)
Q Consensus 227 ~~s~l~--~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~V 304 (419)
+.+.++ .+|.|+.+..++.+|..+....++||||||||.|++.+.. +++..+..+++..++ .++.+.|
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~---~~g~~d~~nlLkp~L-------~~g~i~v 318 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---SGGQVDAANLIKPLL-------SSGKIRV 318 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC---CCcHHHHHHHHHHHH-------hCCCeEE
Confidence 666665 5688999999999999998888999999999999876532 123345556665555 3567999
Q ss_pred EEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHH-----HHHc-----CCCCH
Q 014743 305 LMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKI-----AEKM-----NGASG 369 (419)
Q Consensus 305 I~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~l-----a~~t-----~G~sg 369 (419)
|++||..+ ..|++|.| ||+ .|.++.|+.+++..||+.+...+....++++..- +..+ +-+.|
T Consensus 319 IgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lP 395 (758)
T PRK11034 319 IGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLP 395 (758)
T ss_pred EecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccCh
Confidence 99999875 46999999 996 7999999999999999988777766656654332 2222 34556
Q ss_pred HHHHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHh
Q 014743 370 AELKAVCTEAGMFAL----RERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 370 adi~~l~~~A~~~a~----~~~~~~vt~eD~~~Al~~v~~ 405 (419)
.....++.+|+.... ..+...|+.+|+...+.+...
T Consensus 396 dKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred HHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhC
Confidence 678888888875431 223446888999988877653
No 61
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.1e-17 Score=158.19 Aligned_cols=219 Identities=20% Similarity=0.274 Sum_probs=168.7
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
+..+..|++.+||+++++++.=+|.....+ -...-|+|||||||.||||||..+|++++.++-..++.-+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 456788899999999999999999875222 256789999999999999999999999999988777765432
Q ss_pred hhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcc-------cccc------CC
Q 014743 234 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD-------GFEA------SN 300 (419)
Q Consensus 234 ~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~-------~~~~------~~ 300 (419)
. |+ +-.++.. -.+.+|+|||||+.+ .+.+..+|...+.... +... -.
T Consensus 91 ~--gD----laaiLt~--Le~~DVLFIDEIHrl------------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 P--GD----LAAILTN--LEEGDVLFIDEIHRL------------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred h--hh----HHHHHhc--CCcCCeEEEehhhhc------------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 1 22 2223322 234579999999996 3456677777776532 1111 13
Q ss_pred CeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCC-CCHHHHHHHcCCCCHHHHHHHHHHH
Q 014743 301 KIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLKKIAEKMNGASGAELKAVCTEA 379 (419)
Q Consensus 301 ~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~G~sgadi~~l~~~A 379 (419)
..++|++|.+...+...|+. ||.....+..++.++..+|+......+.+.-+ ....++|.++.| |++--..|+++.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 68899999999999999988 99999999999999999999988877665432 235689999998 888888999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHH
Q 014743 380 GMFALRERRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 380 ~~~a~~~~~~~vt~eD~~~Al~~v 403 (419)
..+|.-.+...|+.+--..|+..+
T Consensus 228 RDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 228 RDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHh
Confidence 999987787788777666666654
No 62
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.1e-18 Score=184.17 Aligned_cols=163 Identities=23% Similarity=0.357 Sum_probs=133.4
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCC---CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh-
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIA---QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ- 233 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~---~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~- 233 (419)
+.|+||++++..|.++|... +.|.. ++..+||.||.|+|||-||++||..+ ...++++++++|.+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~ev 633 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEV 633 (898)
T ss_pred hhccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhh
Confidence 68999999999999999875 33333 45679999999999999999999976 56799999997542
Q ss_pred --------hhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCC-----
Q 014743 234 --------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN----- 300 (419)
Q Consensus 234 --------~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~----- 300 (419)
.|+|+.+.. ++++..++.+++||||||||+ +|+.+++.|+|+++...-.+..+
T Consensus 634 skligsp~gyvG~e~gg--~LteavrrrP~sVVLfdeIEk------------Ah~~v~n~llq~lD~GrltDs~Gr~Vd~ 699 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKEEGG--QLTEAVKRRPYSVVLFEEIEK------------AHPDVLNILLQLLDRGRLTDSHGREVDF 699 (898)
T ss_pred hhccCCCcccccchhHH--HHHHHHhcCCceEEEEechhh------------cCHHHHHHHHHHHhcCccccCCCcEeec
Confidence 367777666 899999999999999999999 89999999999999876655543
Q ss_pred -CeEEEEEeCCcch----------------------------------------hhHHhcCCCceeEEEEcCCCCHHHHH
Q 014743 301 -KIKVLMATNRIDI----------------------------------------LDQALLRPGRIDRKIEFPNPNEESRL 339 (419)
Q Consensus 301 -~v~VI~tTn~~~~----------------------------------------ld~allr~gRfd~~I~~~~P~~~~r~ 339 (419)
|++||||+|.... ..|+|++ |+|..+.|.+.+.++..
T Consensus 700 kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~n--rid~i~lf~~l~~~~~~ 777 (898)
T KOG1051|consen 700 KNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLN--RIDELDLNLPLDRDELI 777 (898)
T ss_pred cceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhc--ccceeeeecccchhhHh
Confidence 8999999886321 2245555 78989999999988888
Q ss_pred HHHHHHHh
Q 014743 340 DILKIHSR 347 (419)
Q Consensus 340 ~Il~~~~~ 347 (419)
+|....+.
T Consensus 778 ~i~~~~~~ 785 (898)
T KOG1051|consen 778 EIVNKQLT 785 (898)
T ss_pred hhhhhHHH
Confidence 78765543
No 63
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.77 E-value=9e-18 Score=176.99 Aligned_cols=221 Identities=24% Similarity=0.329 Sum_probs=156.7
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------C
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------D 220 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~ 220 (419)
+.++.++.+|++++|++..++.++..+.. ..+.++||+||||||||++|+++.+++ +
T Consensus 55 ~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred HHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 45567888999999999999999876533 346789999999999999999997531 4
Q ss_pred CceEEEeCcch-------hhhhhchhHHHH---HHHH----------HHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 221 CTFIRVSGSEL-------VQKYIGEGSRMV---RELF----------VMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 221 ~~~i~v~~s~l-------~~~~~g~~~~~i---~~lf----------~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.+|+.++|+.. ....+|.....+ ...| .........+||||||+. .++
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~------------L~~ 189 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGE------------LHP 189 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhh------------CCH
Confidence 68999998631 111111100000 0000 011123457999999999 456
Q ss_pred HHHHHHHHHHHHcccc---------c--------------cCCCeE-EEEEeCCcchhhHHhcCCCceeEEEEcCCCCHH
Q 014743 281 EVQRTMLELLNQLDGF---------E--------------ASNKIK-VLMATNRIDILDQALLRPGRIDRKIEFPNPNEE 336 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~---------~--------------~~~~v~-VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~ 336 (419)
..++.|+++|.+..-+ + ...++. |++||+.++.++|++++ |+. .|.|++++.+
T Consensus 190 ~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~e 266 (531)
T TIGR02902 190 VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDE 266 (531)
T ss_pred HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHH
Confidence 7788888888652100 0 011334 45566789999999998 875 6889999999
Q ss_pred HHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014743 337 SRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 337 ~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
++.+|++..+++.++. ++..++.|+..+ .+++++.++++.|+..|..+++..|+.+|++.++.
T Consensus 267 ei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 267 EIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 9999999988776542 222245555554 37999999999999999888888999999999986
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=99.76 E-value=2.9e-17 Score=171.70 Aligned_cols=212 Identities=28% Similarity=0.364 Sum_probs=148.3
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeC
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~ 228 (419)
+.|++++.+.++++|+|++++++.+.+++..... | .+++++||+||||||||++|+++|++++..++.+++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 3588899999999999999999999999875321 1 347899999999999999999999999999999998
Q ss_pred cchhhhhhchhHHHHHHHHHHHHh------hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCe
Q 014743 229 SELVQKYIGEGSRMVRELFVMARE------HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 302 (419)
Q Consensus 229 s~l~~~~~g~~~~~i~~lf~~a~~------~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 302 (419)
++.... ..++.+...+.. ..+.||+|||+|.+... .+....+.+..++. ..+.
T Consensus 73 sd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~--------~d~~~~~aL~~~l~-------~~~~ 131 (482)
T PRK04195 73 SDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN--------EDRGGARAILELIK-------KAKQ 131 (482)
T ss_pred cccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc--------cchhHHHHHHHHHH-------cCCC
Confidence 875432 122232222221 25779999999997542 22233444555543 2345
Q ss_pred EEEEEeCCcchhhH-HhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q 014743 303 KVLMATNRIDILDQ-ALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAG 380 (419)
Q Consensus 303 ~VI~tTn~~~~ld~-allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~ 380 (419)
.||+++|.+..+++ .+.+ ....|.|++|+..++..+++..+...++. ++..+..|+..+.| |++.+++...
T Consensus 132 ~iIli~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq 204 (482)
T PRK04195 132 PIILTANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQ 204 (482)
T ss_pred CEEEeccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 57888999888877 4544 34679999999999999998877654432 23346778887766 6666665443
Q ss_pred HHHHHhcCCCCCHHHHHHH
Q 014743 381 MFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 381 ~~a~~~~~~~vt~eD~~~A 399 (419)
..+ .+...++.+++...
T Consensus 205 ~~a--~~~~~it~~~v~~~ 221 (482)
T PRK04195 205 AIA--EGYGKLTLEDVKTL 221 (482)
T ss_pred HHh--cCCCCCcHHHHHHh
Confidence 333 24445666666433
No 65
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=4.8e-17 Score=168.68 Aligned_cols=206 Identities=20% Similarity=0.317 Sum_probs=143.9
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC-----------
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC----------- 221 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~----------- 221 (419)
+++++.+|++|+|++++++.|..++... ..|.++||+|||||||||+|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 5778899999999999999999988763 45677999999999999999999997754
Q ss_pred -------------ceEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHHH
Q 014743 222 -------------TFIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQR 284 (419)
Q Consensus 222 -------------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~ 284 (419)
.++.++++. ..+-..++++.+.+... .+.||||||+|.+. ...++
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~ 135 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFN 135 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHH
Confidence 244444431 11123455666555432 35699999999862 22334
Q ss_pred HHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHHH
Q 014743 285 TMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEK 363 (419)
Q Consensus 285 ~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~~ 363 (419)
.++..+.. ..+.+++|++|+.+..+++++.+ |+. .+.|++|+.++...+++......++ .++..+..|+..
T Consensus 136 ~LLk~LE~-----p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 136 ALLKTLEE-----PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred HHHHHHHh-----CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44444443 24568888888888899999998 774 7999999999999998877654332 122336778888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014743 364 MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 364 t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
+.| +.+++.+.+..+...+ . ..||.+|+..++.
T Consensus 208 s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 208 ASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred hCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 776 5555555555433322 2 2488888877764
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=6.3e-17 Score=163.33 Aligned_cols=207 Identities=19% Similarity=0.267 Sum_probs=146.6
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc---------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 222 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~--------- 222 (419)
.+++.|.+|++|+|++.+++.+..++... +.|..+||+||||||||++|+++|+.+.+.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45678899999999999999999988753 346678999999999999999999977542
Q ss_pred ---------------eEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHH
Q 014743 223 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 223 ---------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
++.++++. ...-..++++.+.+... .+.|++|||+|.+ ....+
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l------------~~~a~ 136 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML------------SRHSF 136 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc------------CHHHH
Confidence 22222211 01223355666554322 3469999999985 23344
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~ 362 (419)
+.++..+.+ ...++.+|++|+.++.+.+.+.+ |+ ..+.|++|+.++..+++...++..+. .++..+..++.
T Consensus 137 naLLk~lEe-----~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~ 208 (363)
T PRK14961 137 NALLKTLEE-----PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAY 208 (363)
T ss_pred HHHHHHHhc-----CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555543 34577888888989999999887 76 57899999999999999887766543 22334667888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
.+.| +++++.+++..+... +...++.+++..++.
T Consensus 209 ~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 209 HAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 8877 778888887766432 345678887776553
No 67
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.76 E-value=8.9e-17 Score=161.93 Aligned_cols=221 Identities=25% Similarity=0.325 Sum_probs=150.4
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC---------CceEEEeCcch
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGSEL 231 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~---------~~~i~v~~s~l 231 (419)
+++.|.+++++.|..++...+.. ..+..++++||||||||++++++++++. ..++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 58999999999999998753221 3456799999999999999999997642 56888888654
Q ss_pred hhh----------hh--ch--------hHHHHHHHHHHHH-hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHH
Q 014743 232 VQK----------YI--GE--------GSRMVRELFVMAR-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 290 (419)
Q Consensus 232 ~~~----------~~--g~--------~~~~i~~lf~~a~-~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL 290 (419)
.+. .. |. .......++.... ...+.||+|||+|.+... . . ..+.+++
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~-~---~~L~~l~ 153 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------D-D---DLLYQLS 153 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------C-c---HHHHhHh
Confidence 221 11 11 1122344555443 244679999999998621 1 1 2344444
Q ss_pred HHcccc-ccCCCeEEEEEeCCcc---hhhHHhcCCCcee-EEEEcCCCCHHHHHHHHHHHHhh-cc--cCCCCCHH---H
Q 014743 291 NQLDGF-EASNKIKVLMATNRID---ILDQALLRPGRID-RKIEFPNPNEESRLDILKIHSRR-MN--LMRGIDLK---K 359 (419)
Q Consensus 291 ~~l~~~-~~~~~v~VI~tTn~~~---~ld~allr~gRfd-~~I~~~~P~~~~r~~Il~~~~~~-~~--~~~~~dl~---~ 359 (419)
+..+.. ....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++..+.. .. ...+.-+. .
T Consensus 154 ~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 231 (365)
T TIGR02928 154 RARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAA 231 (365)
T ss_pred ccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHH
Confidence 331111 1235789999999886 46677766 674 67999999999999999988752 11 11111122 3
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 360 IAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 360 la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
++..+.| ..+.+..+|+.|+..|..++...|+.+|+..|+..+..
T Consensus 232 ~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~ 276 (365)
T TIGR02928 232 LAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK 276 (365)
T ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 4444456 45566678999999998888889999999999988753
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.76 E-value=4.3e-17 Score=179.92 Aligned_cols=220 Identities=18% Similarity=0.263 Sum_probs=159.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCceE
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFI 224 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~i 224 (419)
..+..++.++|+++.++.+.+.+.. ....+++|+||||||||++++.+|..+ +..++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 4456778999999998888877655 344578999999999999999999864 34577
Q ss_pred EEeCcchh--hhhhchhHHHHHHHHHHHHh-hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCC
Q 014743 225 RVSGSELV--QKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK 301 (419)
Q Consensus 225 ~v~~s~l~--~~~~g~~~~~i~~lf~~a~~-~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 301 (419)
.++.+.+. .+|.|+.+..++.+|+.++. ..+.|||||||+.|.+.++.. +..+..+.|...| .++.
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~----~~~d~~n~Lkp~l-------~~G~ 316 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA----GQGDAANLLKPAL-------ARGE 316 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc----ccccHHHHhhHHh-------hCCC
Confidence 88887776 36889999999999998865 467899999999998776421 1122344555544 3567
Q ss_pred eEEEEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-----CCCCHHHHHHHcCCCCH--
Q 014743 302 IKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-----RGIDLKKIAEKMNGASG-- 369 (419)
Q Consensus 302 v~VI~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-----~~~dl~~la~~t~G~sg-- 369 (419)
+.+|+||+..+ .+|++|.| ||. .|.|+.|+.+++..||+.+.+.+... .+..+..++..+.+|-+
T Consensus 317 l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r 393 (852)
T TIGR03345 317 LRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred eEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccc
Confidence 99999999754 48999999 995 89999999999999987766554322 23346677788877664
Q ss_pred ---HHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHH
Q 014743 370 ---AELKAVCTEAGMFA-LRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 370 ---adi~~l~~~A~~~a-~~~~~~~vt~eD~~~Al~ 401 (419)
.---.|+.+|+... +.........++++..+.
T Consensus 394 ~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~ 429 (852)
T TIGR03345 394 QLPDKAVSLLDTACARVALSQNATPAALEDLRRRIA 429 (852)
T ss_pred cCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 33445666665433 333344445555554443
No 69
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=4.3e-17 Score=167.30 Aligned_cols=205 Identities=19% Similarity=0.270 Sum_probs=145.1
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc--------
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 222 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-------- 222 (419)
+.+++.+.+|++|+|++.+++.|..++... ..+..+||+||+|||||++|+.+|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 445788899999999999999999998763 345679999999999999999999987652
Q ss_pred ----------------eEEEeCcchhhhhhchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCCCHHH
Q 014743 223 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 223 ----------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
++.++... ..+-..++++.+.+. ...+.|+||||+|.+ ....
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L------------s~~A 137 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML------------TDQS 137 (484)
T ss_pred CCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc------------CHHH
Confidence 22232211 111234555555443 334679999999996 2345
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHH
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIA 361 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la 361 (419)
++.|+..|.+ ...++++|++|+.+..+.+.+++ |+. .+.|.+++.++..+.++..+...++. .+..+..|+
T Consensus 138 ~NALLKtLEE-----Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia 209 (484)
T PRK14956 138 FNALLKTLEE-----PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA 209 (484)
T ss_pred HHHHHHHhhc-----CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555533 35689999999999999999998 874 68899999988888888776654432 233477888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 398 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~ 398 (419)
..++| +.+|.-+++..+...+ ...|+.+++..
T Consensus 210 ~~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~ 241 (484)
T PRK14956 210 KKGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRK 241 (484)
T ss_pred HHcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHH
Confidence 88888 7788888877654322 22355555533
No 70
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=6.5e-17 Score=171.90 Aligned_cols=191 Identities=16% Similarity=0.249 Sum_probs=140.8
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc---------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 222 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~--------- 222 (419)
.+++.+.+|++|+|++.+++.|.+++... +.+..+||+||+|||||++++++|+.++|.
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 45788899999999999999999998652 346678999999999999999999977542
Q ss_pred ---------------eEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHH
Q 014743 223 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 223 ---------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
++.++.+. ..+-..++++++.+.. ..+.|+||||+|.| ....+
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L------------T~~A~ 136 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML------------TNHAF 136 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC------------CHHHH
Confidence 23332221 1122345666666543 34579999999996 23455
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~ 362 (419)
+.|+..|.+- ..++.+|++||.+..|.+.+++ |+ ..+.|..++.++..+.|+..+..-++. ++..+..|+.
T Consensus 137 NALLKtLEEP-----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 137 NAMLKTLEEP-----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred HHHHHHHHhc-----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6666666543 4589999999999999999998 87 578999999999998888776554432 2334678888
Q ss_pred HcCCCCHHHHHHHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGM 381 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~ 381 (419)
.++| +.+|..+++.++..
T Consensus 209 ~A~G-smRdALsLLdQAia 226 (830)
T PRK07003 209 AAQG-SMRDALSLTDQAIA 226 (830)
T ss_pred HcCC-CHHHHHHHHHHHHH
Confidence 8888 66777777666553
No 71
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=3.7e-17 Score=171.81 Aligned_cols=191 Identities=17% Similarity=0.281 Sum_probs=138.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC----------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---------- 221 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~---------- 221 (419)
..++.+.+|++|+|++.+++.|.+++... +.+..+||+||+|||||++|+.+|+.+.|
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 45788899999999999999999999763 45667899999999999999999998765
Q ss_pred -------------------ceEEEeCcchhhhhhchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCC
Q 014743 222 -------------------TFIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNG 278 (419)
Q Consensus 222 -------------------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~ 278 (419)
.++.++... ..+-..++++.+.+. ...+.|+||||+|.|
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L------------ 136 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML------------ 136 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc------------
Confidence 122232221 112234566665544 334679999999996
Q ss_pred CHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCC-CCH
Q 014743 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDL 357 (419)
Q Consensus 279 ~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~-~dl 357 (419)
+...++.|+..|++ ...++++|++||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+...++.-+ ..+
T Consensus 137 s~~AaNALLKTLEE-----PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL 208 (700)
T PRK12323 137 TNHAFNAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNAL 208 (700)
T ss_pred CHHHHHHHHHhhcc-----CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHH
Confidence 23445555554443 45688999999999999999998 87 57899999999988888766654433222 225
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHH
Q 014743 358 KKIAEKMNGASGAELKAVCTEAGM 381 (419)
Q Consensus 358 ~~la~~t~G~sgadi~~l~~~A~~ 381 (419)
..|+..++| +.++..+++..+..
T Consensus 209 ~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 209 RLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHH
Confidence 677888887 77888888776543
No 72
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.75 E-value=1.2e-16 Score=159.04 Aligned_cols=214 Identities=20% Similarity=0.280 Sum_probs=144.3
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC-----Cce
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTF 223 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~-----~~~ 223 (419)
++|.+++.+.+|++++|++++++.+..++..+ ...+++|+||||||||++|+++++++. .++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~ 69 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNF 69 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccce
Confidence 46888999999999999999999999988652 233699999999999999999999763 357
Q ss_pred EEEeCcchhhhh-------------hch-------hHHHHHHHHHHHHh-----hCCceEEecccccccccccCCCCCCC
Q 014743 224 IRVSGSELVQKY-------------IGE-------GSRMVRELFVMARE-----HAPSIIFMDEIDSIGSARMESGSGNG 278 (419)
Q Consensus 224 i~v~~s~l~~~~-------------~g~-------~~~~i~~lf~~a~~-----~~psVl~iDEiD~l~~~r~~~~~~~~ 278 (419)
+.++++++.... .+. ....++.+...... ..+.+|+|||+|.+.
T Consensus 70 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~----------- 138 (337)
T PRK12402 70 TEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR----------- 138 (337)
T ss_pred EEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------
Confidence 888887764321 111 01223333322222 235699999998852
Q ss_pred CHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCH
Q 014743 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDL 357 (419)
Q Consensus 279 ~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl 357 (419)
...++.+..+++.. ..++.+|++|+.+..+.+.+.+ |+ ..+.|++|+.++...+++..+...++. ++..+
T Consensus 139 -~~~~~~L~~~le~~-----~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al 209 (337)
T PRK12402 139 -EDAQQALRRIMEQY-----SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGL 209 (337)
T ss_pred -HHHHHHHHHHHHhc-----cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 33455566666543 2345677777777777778877 65 468999999999999998877655432 33346
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014743 358 KKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 358 ~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
..|+..+.| |+..++......+. ....||.+|+..++.
T Consensus 210 ~~l~~~~~g----dlr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 210 ELIAYYAGG----DLRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHHcCC----CHHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 677777644 44444444333332 223688888776554
No 73
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.75 E-value=1e-16 Score=164.59 Aligned_cols=205 Identities=28% Similarity=0.369 Sum_probs=145.0
Q ss_pred cccCCCCCcccccCcHHHHHH---HHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeC
Q 014743 152 VEKVPDSTYDMIGGLDQQIKE---IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~---l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~ 228 (419)
.++.++.++++++|+++.+.. +..++.. ..+.+++|+||||||||++|+++|+..+..|+.+++
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 456778889999999999777 8887754 244589999999999999999999999999999987
Q ss_pred cchhhhhhchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEE
Q 014743 229 SELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 304 (419)
Q Consensus 229 s~l~~~~~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~V 304 (419)
+.. +...++.+++.+. .....||||||+|.+. ...+..++..+. .+.+++
T Consensus 70 ~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------~~~q~~LL~~le-------~~~iil 123 (413)
T PRK13342 70 VTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------KAQQDALLPHVE-------DGTITL 123 (413)
T ss_pred ccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC------------HHHHHHHHHHhh-------cCcEEE
Confidence 642 2234555665553 2356799999999852 334455555543 245666
Q ss_pred EEEeC--CcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc--c--CCCCCHHHHHHHcCCCCHHHHHHHHHH
Q 014743 305 LMATN--RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN--L--MRGIDLKKIAEKMNGASGAELKAVCTE 378 (419)
Q Consensus 305 I~tTn--~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~--~--~~~~dl~~la~~t~G~sgadi~~l~~~ 378 (419)
|++|+ ....+++++++ |+ ..+.|++|+.++...+++..+.... + ..+..+..++..+.| ..+.+.+++..
T Consensus 124 I~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~ 199 (413)
T PRK13342 124 IGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLEL 199 (413)
T ss_pred EEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 76653 34578899998 88 6889999999999999987765421 1 112225567777755 55666666665
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHH
Q 014743 379 AGMFALRERRIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 379 A~~~a~~~~~~~vt~eD~~~Al~~v~ 404 (419)
+... ...|+.+++..++....
T Consensus 200 ~~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 200 AALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred HHHc-----cCCCCHHHHHHHHhhhh
Confidence 5432 44688888888877643
No 74
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=8.2e-17 Score=169.53 Aligned_cols=204 Identities=18% Similarity=0.239 Sum_probs=147.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC----------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---------- 221 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~---------- 221 (419)
..++++.+|++|+|++.+++.|..++... +.+..+||+||+|||||++|+++|+.+++
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 34678899999999999999999999753 45678899999999999999999998765
Q ss_pred --------------ceEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHH
Q 014743 222 --------------TFIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 222 --------------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
.++.++++.- ..-..+|++...+.. ..+.|+||||+|.| +....
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L------------S~~A~ 135 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML------------STHSF 135 (702)
T ss_pred cCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc------------CHHHH
Confidence 2344443321 122345666655432 34679999999985 33455
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~ 362 (419)
+.|+..|.+. .+++.+|++|+.+..+++.+++ |+ ..+.|.+++.++..+.++..+..-++. .+..+..|+.
T Consensus 136 NALLKtLEEP-----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~ 207 (702)
T PRK14960 136 NALLKTLEEP-----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAE 207 (702)
T ss_pred HHHHHHHhcC-----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6666666543 4678889999999999888887 77 478999999999988888777654432 2233677888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 398 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~ 398 (419)
.+.| +.+++.+++..+... +...|+.+|+..
T Consensus 208 ~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~ 238 (702)
T PRK14960 208 SAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKE 238 (702)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHH
Confidence 8877 788888887665432 334566666644
No 75
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.74 E-value=2.1e-17 Score=180.51 Aligned_cols=221 Identities=22% Similarity=0.345 Sum_probs=150.3
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh--------
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV-------- 232 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~-------- 232 (419)
.+..|++.+|+.|.+++..... .+-..+..++|+||||||||++++++|+.++.++++++.+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4689999999999988874311 1113456799999999999999999999999999998876532
Q ss_pred -hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc--c--------ccCCC
Q 014743 233 -QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG--F--------EASNK 301 (419)
Q Consensus 233 -~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~--~--------~~~~~ 301 (419)
..|+|...+.+.+.+..+....| ||||||+|++.+... ++ ....|+++++.-.. + -.-++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~------g~--~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR------GD--PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC------CC--HHHHHHHHhccccEEEEecccccccccCCc
Confidence 24777777777676666554445 899999999865321 22 35678888764110 0 12268
Q ss_pred eEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhh-----cccCC-C--CC---HHHHHHH-cCCCCH
Q 014743 302 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR-----MNLMR-G--ID---LKKIAEK-MNGASG 369 (419)
Q Consensus 302 v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~-----~~~~~-~--~d---l~~la~~-t~G~sg 369 (419)
+++|+|+|.. .++++|++ |+. .|.|++++.++..+|.+.++.. ..+.. . ++ +..|+.. +..+..
T Consensus 466 v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~Ga 541 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGV 541 (784)
T ss_pred eEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCC
Confidence 9999999988 49999999 995 8999999999999999888731 11111 1 11 3334432 234445
Q ss_pred HHHHHHHHHHHHHHHH----hc---CCCCCHHHHHHHHH
Q 014743 370 AELKAVCTEAGMFALR----ER---RIHVTQEDFEMAVA 401 (419)
Q Consensus 370 adi~~l~~~A~~~a~~----~~---~~~vt~eD~~~Al~ 401 (419)
+.|+.+++.....++. .+ ...|+.+++...+-
T Consensus 542 R~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 542 RSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 6666555544433332 22 35688888776654
No 76
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.74 E-value=2.1e-16 Score=156.35 Aligned_cols=165 Identities=22% Similarity=0.305 Sum_probs=123.0
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeC
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~ 228 (419)
.+|.+++++.++++++|++++++.+..++... ..|..+||+||||+|||+++++++++.+.+++.+++
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~ 76 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNG 76 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEecc
Confidence 35778999999999999999999999988642 345677779999999999999999999889999998
Q ss_pred cchhhhhhchhHHHHHHHHHHHH-hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEE
Q 014743 229 SELVQKYIGEGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 307 (419)
Q Consensus 229 s~l~~~~~g~~~~~i~~lf~~a~-~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~t 307 (419)
++ .. +......+........ ...+.||+|||+|.+. ..+.+..+..+++.. .+++.+|+|
T Consensus 77 ~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~~L~~~le~~-----~~~~~~Ilt 137 (316)
T PHA02544 77 SD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG-----------LADAQRHLRSFMEAY-----SKNCSFIIT 137 (316)
T ss_pred Cc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc-----------CHHHHHHHHHHHHhc-----CCCceEEEE
Confidence 76 22 2221122222211111 1357899999999852 233455566666543 356789999
Q ss_pred eCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHh
Q 014743 308 TNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR 347 (419)
Q Consensus 308 Tn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~ 347 (419)
||.++.+++.+++ ||. .+.|+.|+.+++..++..+..
T Consensus 138 ~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 138 ANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred cCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999998 885 789999999999888775443
No 77
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.74 E-value=1.2e-16 Score=157.72 Aligned_cols=206 Identities=26% Similarity=0.353 Sum_probs=140.5
Q ss_pred cCCCCCcccccCcHHHH---HHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 154 KVPDSTYDMIGGLDQQI---KEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~---~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
...+.++++++||++.+ +-|+.+|.. ....+++|||||||||||+|+.||+..+..|..++...
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 45577889999999876 445555544 45678999999999999999999999999999998643
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhC----CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEE
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHA----PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 306 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~----psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~ 306 (419)
.+-+-++++++.|+... -.|||+|||+.|-. .-|..++..+. ++.+++|+
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK------------~QQD~lLp~vE-------~G~iilIG 137 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK------------AQQDALLPHVE-------NGTIILIG 137 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh------------hhhhhhhhhhc-------CCeEEEEe
Confidence 34556889999996543 36999999999732 22344555442 45677777
Q ss_pred EeC-Cc-chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHh--hcccC------CCCCHHHHHHHcCCCCHHHHHHHH
Q 014743 307 ATN-RI-DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR--RMNLM------RGIDLKKIAEKMNGASGAELKAVC 376 (419)
Q Consensus 307 tTn-~~-~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~--~~~~~------~~~dl~~la~~t~G~sgadi~~l~ 376 (419)
||. .| -.+.+++++ |. .+++|.+.+.++..+++..-+. ..++. ++.-+..|+..++| |.+.++
T Consensus 138 ATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aL 210 (436)
T COG2256 138 ATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRAL 210 (436)
T ss_pred ccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHH
Confidence 653 34 489999998 65 4688999999999999987332 22222 12225567777777 555555
Q ss_pred HHHHHHHHHhc-CCCCCHHHHHHHHHHHHh
Q 014743 377 TEAGMFALRER-RIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 377 ~~A~~~a~~~~-~~~vt~eD~~~Al~~v~~ 405 (419)
+..-+.+.... ...++.++++..+.+-..
T Consensus 211 N~LE~~~~~~~~~~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 211 NLLELAALSAEPDEVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHHhcCCCcccCHHHHHHHHhhhhh
Confidence 43333222111 113347777777776544
No 78
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.74 E-value=7.5e-17 Score=164.45 Aligned_cols=224 Identities=22% Similarity=0.298 Sum_probs=147.1
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhc--CC-CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh-hhh
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESL--GI-AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYI 236 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~--gi-~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~-~~~ 236 (419)
+.|+||+.+++.+..++..+.++-...... ++ .+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyv 150 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYV 150 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcc
Confidence 459999999999988885433221100000 11 13478999999999999999999999999999999998764 588
Q ss_pred chhH-HHHHHHHHH----HHhhCCceEEecccccccccccCCCC--CCCCHHHHHHHHHHHHHcc------c--cccCCC
Q 014743 237 GEGS-RMVRELFVM----AREHAPSIIFMDEIDSIGSARMESGS--GNGDSEVQRTMLELLNQLD------G--FEASNK 301 (419)
Q Consensus 237 g~~~-~~i~~lf~~----a~~~~psVl~iDEiD~l~~~r~~~~~--~~~~~~~~~~l~~lL~~l~------~--~~~~~~ 301 (419)
|... ..+..++.. .....++||||||||++...+.+... ......+++.|+++|+.-. + .....+
T Consensus 151 G~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~ 230 (412)
T PRK05342 151 GEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQE 230 (412)
T ss_pred cchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCC
Confidence 8743 334454443 23457899999999999876322110 0112358888888886321 0 011124
Q ss_pred eEEEEEeCCcc----------------------------------------------------hhhHHhcCCCceeEEEE
Q 014743 302 IKVLMATNRID----------------------------------------------------ILDQALLRPGRIDRKIE 329 (419)
Q Consensus 302 v~VI~tTn~~~----------------------------------------------------~ld~allr~gRfd~~I~ 329 (419)
.++|+|+|... -+.|+|++ |+|.++.
T Consensus 231 ~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~ 308 (412)
T PRK05342 231 FIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVAT 308 (412)
T ss_pred eEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeee
Confidence 56666666510 03577777 9999999
Q ss_pred cCCCCHHHHHHHHHH----HHhhc-------ccC---CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q 014743 330 FPNPNEESRLDILKI----HSRRM-------NLM---RGIDLKKIAEK--MNGASGAELKAVCTEAGMFALRE 386 (419)
Q Consensus 330 ~~~P~~~~r~~Il~~----~~~~~-------~~~---~~~dl~~la~~--t~G~sgadi~~l~~~A~~~a~~~ 386 (419)
|.+++.+...+|+.. .++.+ ++. .+--+..|++. ..++..+-|+.+++......+.+
T Consensus 309 f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 309 LEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 999999999999973 33221 111 11125567775 44677788888887776655543
No 79
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.1e-17 Score=169.13 Aligned_cols=222 Identities=24% Similarity=0.403 Sum_probs=156.4
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc------hh--
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE------LV-- 232 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~------l~-- 232 (419)
.|=-|++++++.|.+++..-...+ --.+.-++|+||||+|||+|+++||+.++..|++++-.- +.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 456799999999999987532221 123456889999999999999999999999999997643 33
Q ss_pred -hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHc------ccc----ccCCC
Q 014743 233 -QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL------DGF----EASNK 301 (419)
Q Consensus 233 -~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l------~~~----~~~~~ 301 (419)
..|+|..++.+-+-...|....| |++|||||++.+.-. +|| ...|+++|+-= |.+ -.-++
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r------GDP--aSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR------GDP--ASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC------CCh--HHHHHhhcCHhhcCchhhccccCccchhh
Confidence 34999999999888889988888 899999999865422 333 35677777521 111 01248
Q ss_pred eEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhh-----cccC-CCCC-----HHHHHHH-cC--CC
Q 014743 302 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR-----MNLM-RGID-----LKKIAEK-MN--GA 367 (419)
Q Consensus 302 v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~-----~~~~-~~~d-----l~~la~~-t~--G~ 367 (419)
|++|+|+|..+.+|..|+. |.. +|.++.++.++..+|-+.|+-. .++. ..+. +..|... |. |.
T Consensus 467 VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGV 543 (782)
T COG0466 467 VMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGV 543 (782)
T ss_pred eEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhh
Confidence 9999999999999999999 885 8999999999999999877522 2222 1111 2222222 21 22
Q ss_pred CH--HHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHH
Q 014743 368 SG--AELKAVCTEAGMFALRERR---IHVTQEDFEMAVA 401 (419)
Q Consensus 368 sg--adi~~l~~~A~~~a~~~~~---~~vt~eD~~~Al~ 401 (419)
-+ +.|..+|+.++..-+.... ..++..++..-+-
T Consensus 544 R~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 544 RNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhC
Confidence 22 6677888887766554322 2466666665543
No 80
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.74 E-value=2e-16 Score=161.05 Aligned_cols=222 Identities=23% Similarity=0.315 Sum_probs=150.6
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEeCcchhh--
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQ-- 233 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~~s~l~~-- 233 (419)
+.+.|.++.+++|...+...+.+ ..+..++++||||||||++++.+++++ +..++.++|....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 67899999999999988653221 345678999999999999999999865 46788998864322
Q ss_pred --------hhhc-------h-hHHHHHHHHHHHHh-hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc
Q 014743 234 --------KYIG-------E-GSRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF 296 (419)
Q Consensus 234 --------~~~g-------~-~~~~i~~lf~~a~~-~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~ 296 (419)
...+ . ....+..+.+.... ..+.||+|||+|.+.... . . ..+..+++.++..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~-~---~~l~~l~~~~~~~ 169 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------G-N---DVLYSLLRAHEEY 169 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------C-c---hHHHHHHHhhhcc
Confidence 1111 0 11223333333332 346799999999986211 1 1 2344444433322
Q ss_pred ccCCCeEEEEEeCCcc---hhhHHhcCCCce-eEEEEcCCCCHHHHHHHHHHHHhhcc---cCCCCCHHHHHHHcCCC--
Q 014743 297 EASNKIKVLMATNRID---ILDQALLRPGRI-DRKIEFPNPNEESRLDILKIHSRRMN---LMRGIDLKKIAEKMNGA-- 367 (419)
Q Consensus 297 ~~~~~v~VI~tTn~~~---~ld~allr~gRf-d~~I~~~~P~~~~r~~Il~~~~~~~~---~~~~~dl~~la~~t~G~-- 367 (419)
...++.+|+++|..+ .+++.+.+ || ...|.|++++.++..+|++.++..-. ...+..+..+++.+.+.
T Consensus 170 -~~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 170 -PGARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred -CCCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 223788999998765 45666655 55 35789999999999999998775321 11222356667766442
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 368 SGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 368 sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
..+.+..+|..|...|..++...|+.+|+..|+..+..
T Consensus 247 d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 247 DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 33556688999999998888889999999999998843
No 81
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.2e-17 Score=173.64 Aligned_cols=168 Identities=28% Similarity=0.457 Sum_probs=133.6
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc------hh--
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE------LV-- 232 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~------l~-- 232 (419)
+|=-|++++++.|.++|.....+ |-..++-+.|+||||+|||+++|+||..++..|++++-.- +.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46679999999999999764222 3356777889999999999999999999999999987543 32
Q ss_pred -hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHH------ccccc----cCCC
Q 014743 233 -QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ------LDGFE----ASNK 301 (419)
Q Consensus 233 -~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~------l~~~~----~~~~ 301 (419)
..|+|..++.+-+.+..+....| +++|||||++++.- .+|+ ...|+++|+- +|.+- .-++
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~------qGDP--asALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH------QGDP--ASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC------CCCh--HHHHHHhcChhhccchhhhccccccchhh
Confidence 34999999999999999988888 89999999997321 1333 3567777752 11111 1247
Q ss_pred eEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHh
Q 014743 302 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR 347 (419)
Q Consensus 302 v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~ 347 (419)
|++|+|.|..+.|++.|+. |.. +|+++-+..++..+|.+.|+-
T Consensus 555 VLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred eEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 9999999999999999998 885 899999999999999988753
No 82
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=1.8e-16 Score=165.16 Aligned_cols=217 Identities=18% Similarity=0.249 Sum_probs=151.5
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEE----
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR---- 225 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~---- 225 (419)
.+..++.+.+|++++|++.+++.|..++... +.+.++||+||||||||++|+++|+.+++..-.
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~ 77 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENT 77 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCc
Confidence 3456788999999999999999999988652 457789999999999999999999987652110
Q ss_pred --------EeCcchhhh----------hhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHH
Q 014743 226 --------VSGSELVQK----------YIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 226 --------v~~s~l~~~----------~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
-+|..+... -...+...++.+++.+... .+.|++|||+|.+. ....
T Consensus 78 ~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 78 TIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 001111100 0011334567777776543 35699999998862 2334
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCC-CCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMR-GIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~-~~dl~~la~ 362 (419)
+.|+..|.+ ....+++|++|+.++.+++.+.+ |+ ..+.|.+++.++...+++..++.-+..- +..+..|+.
T Consensus 146 naLLk~LEe-----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 146 NALLKTLEE-----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred HHHHHHHhh-----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555554443 35678888889999999999987 76 4688999999999999998887655422 233677888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
.++| +.+++.+++..+..++-. ....||.+|+...+
T Consensus 218 ~s~G-slR~al~~Ldkai~~~~~-~~~~It~~~V~~ll 253 (507)
T PRK06645 218 KSEG-SARDAVSILDQAASMSAK-SDNIISPQVINQML 253 (507)
T ss_pred HcCC-CHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHH
Confidence 8887 888988888887655421 12246666665543
No 83
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=8e-17 Score=168.59 Aligned_cols=207 Identities=16% Similarity=0.213 Sum_probs=147.3
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc--------
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 222 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-------- 222 (419)
..+++++.+|++|+|++.+++.|..++... ..+..+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 456788999999999999999999999753 456678999999999999999999977542
Q ss_pred ----------------eEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHH
Q 014743 223 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 223 ----------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
++.++.+. ..+-..++++.+.+.. ..+.|+||||+|.+ ....
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l------------s~~a 135 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML------------SGHS 135 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc------------CHHH
Confidence 44444331 1122235666655432 34579999999996 2344
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHH
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIA 361 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la 361 (419)
++.|+..|.+. ..++.+|++|+.+..+.+.+++ |+ ..+.|.+++.++....++..+...++. .+..+..++
T Consensus 136 ~naLLk~LEep-----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia 207 (509)
T PRK14958 136 FNALLKTLEEP-----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLA 207 (509)
T ss_pred HHHHHHHHhcc-----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 56666666543 4578889999999999988887 76 467899999988888777776654432 223366788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
..+.| +.+++.+++..+..+ +...||.+|+...+
T Consensus 208 ~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 208 RAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 88776 788888888766433 23456666655443
No 84
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=2.2e-16 Score=167.94 Aligned_cols=205 Identities=19% Similarity=0.262 Sum_probs=145.5
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc---------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 222 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~--------- 222 (419)
..++.+.+|++|+|++.+++.|.+.+... +.+..+||+||+|||||++|+++|+.++|.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 34678889999999999999999998762 345668999999999999999999987652
Q ss_pred ---------------eEEEeCcchhhhhhchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCCCHHHH
Q 014743 223 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 223 ---------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
++.++++. . ..-..+|++.+.+. ...+.|+||||+|.+ ....+
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas----~--~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L------------s~~a~ 136 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAAS----R--TKVEDTRELLDNVQYAPARGRFKVYLIDEVHML------------SRHSF 136 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccc----c--CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC------------CHHHH
Confidence 23333321 0 11223555555443 234679999999995 34456
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~ 362 (419)
+.|+..|.+ ..+++++|++|+.+..+.+.+++ |+ ..+.|.+++.++....|+..+..-++. .+..+..|+.
T Consensus 137 NALLKtLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~ 208 (647)
T PRK07994 137 NALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLAR 208 (647)
T ss_pred HHHHHHHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666654 35678899999999999999988 85 689999999999988888776544332 2233667888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
.++| +.++...++..|... +...|+.+++...
T Consensus 209 ~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~ 240 (647)
T PRK07994 209 AADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAM 240 (647)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 8887 777877888765432 2223555555443
No 85
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=3.3e-16 Score=169.31 Aligned_cols=190 Identities=20% Similarity=0.262 Sum_probs=137.7
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCce--------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF-------- 223 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~-------- 223 (419)
.+++++.+|++|+|++.+++.|++++... +.+..+||+||||||||++|+++|+.+.+..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 45678899999999999999999998753 3456679999999999999999999886641
Q ss_pred ----------------EEEeCcchhhhhhchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCCCHHHH
Q 014743 224 ----------------IRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 224 ----------------i~v~~s~l~~~~~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
+.++... ...-..+|++.+.+. .....|+||||+|.| ....+
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L------------T~eAq 136 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML------------SRSSF 136 (944)
T ss_pred CchHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc------------CHHHH
Confidence 1111110 011223555555443 234579999999995 34556
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~ 362 (419)
+.|+..|.+ ...++++|++|+.+..|.+.+++ |+ ..+.|.+++.++..+.|+..+..-++. .+..+..|+.
T Consensus 137 NALLKtLEE-----PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~ 208 (944)
T PRK14949 137 NALLKTLEE-----PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAK 208 (944)
T ss_pred HHHHHHHhc-----cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666654 35678888889999999999888 76 578999999999998888766543322 2223677888
Q ss_pred HcCCCCHHHHHHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAG 380 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~ 380 (419)
.+.| +.+++.++|..+.
T Consensus 209 ~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 209 AANG-SMRDALSLTDQAI 225 (944)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8887 7788888887655
No 86
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.72 E-value=1.6e-16 Score=161.40 Aligned_cols=223 Identities=22% Similarity=0.319 Sum_probs=148.6
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHH----hhcCCC-CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh-h
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELF----ESLGIA-QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-K 234 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~----~~~gi~-~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~-~ 234 (419)
+.|+||+++++.+..++....++-... ..-++. .+.++||+||||||||++|+++|..++.+|..++++.+.. .
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 568999999999998885322221000 000111 2468999999999999999999999999999999988753 5
Q ss_pred hhchh-HHHHHHHHHHH----HhhCCceEEecccccccccccCCCCC--CCCHHHHHHHHHHHHHcccc---------cc
Q 014743 235 YIGEG-SRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSG--NGDSEVQRTMLELLNQLDGF---------EA 298 (419)
Q Consensus 235 ~~g~~-~~~i~~lf~~a----~~~~psVl~iDEiD~l~~~r~~~~~~--~~~~~~~~~l~~lL~~l~~~---------~~ 298 (419)
|+|+. +..+..++..+ ....++||||||||++.+++.+...+ .....+++.|+++|+. ... ..
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG-~~~~v~~~~gr~~~ 235 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEG-TVANVPPQGGRKHP 235 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhc-cceecccCCCcccc
Confidence 88874 34444444322 23467899999999998754321110 1113688889998842 111 11
Q ss_pred CCCeEEEEEeCCc---------------------------c-----------------------hhhHHhcCCCceeEEE
Q 014743 299 SNKIKVLMATNRI---------------------------D-----------------------ILDQALLRPGRIDRKI 328 (419)
Q Consensus 299 ~~~v~VI~tTn~~---------------------------~-----------------------~ld~allr~gRfd~~I 328 (419)
..+.++|+|+|-. + -+.|+|+. |+|.++
T Consensus 236 ~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv 313 (413)
T TIGR00382 236 YQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIA 313 (413)
T ss_pred CCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEe
Confidence 2467888888861 0 04578877 999999
Q ss_pred EcCCCCHHHHHHHHHHH----Hhhc-------ccC---CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q 014743 329 EFPNPNEESRLDILKIH----SRRM-------NLM---RGIDLKKIAEK--MNGASGAELKAVCTEAGMFALRE 386 (419)
Q Consensus 329 ~~~~P~~~~r~~Il~~~----~~~~-------~~~---~~~dl~~la~~--t~G~sgadi~~l~~~A~~~a~~~ 386 (419)
.|.+.+.++..+|+... ++.+ ++. .+--+..||.. ...+.++-|+.++++....++.+
T Consensus 314 ~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 314 TLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 99999999999998753 2221 111 11115567776 34677789999888877666544
No 87
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.72 E-value=8e-17 Score=178.19 Aligned_cols=170 Identities=24% Similarity=0.357 Sum_probs=136.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCceE
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFI 224 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~i 224 (419)
..+..++.++|+++.++.+.+.+.. ....+++|+||||||||++++++|..+ +..++
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 4455678999999998888887765 345678999999999999999999876 67888
Q ss_pred EEeCcchh--hhhhchhHHHHHHHHHHHHh-hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCC
Q 014743 225 RVSGSELV--QKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK 301 (419)
Q Consensus 225 ~v~~s~l~--~~~~g~~~~~i~~lf~~a~~-~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 301 (419)
.++.+.++ .+|.|+.+..++.+|..+.. ..|+||||||++.|.+.+... +..+..+.|...+ .++.
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~----~~~d~~~~lkp~l-------~~g~ 307 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD----GAMDAGNMLKPAL-------ARGE 307 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc----cchhHHHHhcchh-------hcCC
Confidence 88888876 56889999999999987644 568999999999998765321 2234556655544 4568
Q ss_pred eEEEEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc
Q 014743 302 IKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL 351 (419)
Q Consensus 302 v~VI~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~ 351 (419)
+.+|++|+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+...+..
T Consensus 308 l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 308 LHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred CeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 99999999877 48999999 998 5889999999999999887665543
No 88
>PLN03025 replication factor C subunit; Provisional
Probab=99.72 E-value=3.2e-16 Score=155.51 Aligned_cols=188 Identities=22% Similarity=0.240 Sum_probs=132.2
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC-----CceE
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFI 224 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~-----~~~i 224 (419)
.|++++.+.++++++|++++++.|+.++... ...++||+||||||||++|+++|+++. ..++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVL 68 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence 4778999999999999999999999877642 234699999999999999999999862 2366
Q ss_pred EEeCcchhhhhhchhHHHHHHHHHH-HHh------hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc
Q 014743 225 RVSGSELVQKYIGEGSRMVRELFVM-ARE------HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297 (419)
Q Consensus 225 ~v~~s~l~~~~~g~~~~~i~~lf~~-a~~------~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~ 297 (419)
.++.++..+. ..++..... +.. ..+.||+|||+|.+. ...++.+...+...
T Consensus 69 eln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt------------~~aq~aL~~~lE~~---- 126 (319)
T PLN03025 69 ELNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT------------SGAQQALRRTMEIY---- 126 (319)
T ss_pred eecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC------------HHHHHHHHHHHhcc----
Confidence 6666653221 123333221 111 236799999999962 33456666666433
Q ss_pred cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 014743 298 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVC 376 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~ 376 (419)
...+.+|++||..+.+.+.+++ |+ ..+.|++|+.++....++...+.-++. ++..+..++..+.| +.+.+.+.+
T Consensus 127 -~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~L 201 (319)
T PLN03025 127 -SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNL 201 (319)
T ss_pred -cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 3456788899999889899988 76 478999999999999988776654432 23346777777766 444444444
Q ss_pred H
Q 014743 377 T 377 (419)
Q Consensus 377 ~ 377 (419)
+
T Consensus 202 q 202 (319)
T PLN03025 202 Q 202 (319)
T ss_pred H
Confidence 4
No 89
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.71 E-value=3.7e-16 Score=172.78 Aligned_cols=200 Identities=24% Similarity=0.321 Sum_probs=151.3
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCceEE
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIR 225 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~i~ 225 (419)
....++.|+|.++.++.+.+.+.. ...++++|+||||||||++|+.+|..+ +..++.
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 344678999999999999998876 356688999999999999999999865 467899
Q ss_pred EeCcchh--hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeE
Q 014743 226 VSGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 303 (419)
Q Consensus 226 v~~s~l~--~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 303 (419)
++++.++ .+|.|+.+..++.+|+.+....++||||||||.|++.+... +.....+.|...| .++.+.
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~----g~~~~a~lLkp~l-------~rg~l~ 309 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE----GAIDAANILKPAL-------ARGELQ 309 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC----CcccHHHHhHHHH-------hCCCcE
Confidence 9998887 57899999999999999988889999999999998765322 1223455555444 356789
Q ss_pred EEEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhc----cc-CCCCCHHHHHHHcCCCCH----
Q 014743 304 VLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM----NL-MRGIDLKKIAEKMNGASG---- 369 (419)
Q Consensus 304 VI~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~----~~-~~~~dl~~la~~t~G~sg---- 369 (419)
+|++|+..+ ..|++|.+ ||. .|.++.|+.++...|++.....+ ++ ..+.-+..++..+.+|.+
T Consensus 310 ~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~l 386 (821)
T CHL00095 310 CIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFL 386 (821)
T ss_pred EEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccC
Confidence 999999765 46899999 997 57999999999999987654321 11 122236667777777664
Q ss_pred -HHHHHHHHHHHHH
Q 014743 370 -AELKAVCTEAGMF 382 (419)
Q Consensus 370 -adi~~l~~~A~~~ 382 (419)
.-.-.++.+|+..
T Consensus 387 Pdkaidlld~a~a~ 400 (821)
T CHL00095 387 PDKAIDLLDEAGSR 400 (821)
T ss_pred chHHHHHHHHHHHH
Confidence 3334566666543
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=5.8e-16 Score=164.38 Aligned_cols=207 Identities=18% Similarity=0.279 Sum_probs=148.1
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc---------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 222 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~--------- 222 (419)
..++++.+|++|+|++.+++.|..++... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 45788899999999999999999998753 456789999999999999999999976543
Q ss_pred ---------------eEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHH
Q 014743 223 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 223 ---------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
++.++.+. +.+...++++++.+.. ..+.||||||+|.+ .....
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L------------s~~A~ 136 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML------------SKSAF 136 (709)
T ss_pred ccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc------------CHHHH
Confidence 12222111 1223456777765532 33579999999885 23345
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~ 362 (419)
+.|+..|.+ ..+++.+|++|+.+..+.+.+++ |+ ..+.|++++.++....|...+...++. ++..+..|+.
T Consensus 137 NALLKtLEE-----Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~ 208 (709)
T PRK08691 137 NAMLKTLEE-----PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGR 208 (709)
T ss_pred HHHHHHHHh-----CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 556655554 24578889999999999988886 77 467888999999999888777765442 2223677888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
.+.| +.+++.+++..+..+. ...|+.+++...+-
T Consensus 209 ~A~G-slRdAlnLLDqaia~g----~g~It~e~V~~lLG 242 (709)
T PRK08691 209 AAAG-SMRDALSLLDQAIALG----SGKVAENDVRQMIG 242 (709)
T ss_pred HhCC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHHHc
Confidence 8876 7888888887765432 33566666655543
No 91
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=8.5e-16 Score=163.09 Aligned_cols=206 Identities=17% Similarity=0.262 Sum_probs=145.3
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc--------
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 222 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-------- 222 (419)
...++.+.+|++|+|++.+++.|.+++... +.+..+||+||+|||||++|+++|+.++|.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~ 73 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI 73 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC
Confidence 345788899999999999999999998763 456678999999999999999999887652
Q ss_pred ---------------------eEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCC
Q 014743 223 ---------------------FIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGN 277 (419)
Q Consensus 223 ---------------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~ 277 (419)
++.++... ..+-..++++.+.+... .+.|++|||+|.+
T Consensus 74 ~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L----------- 136 (618)
T PRK14951 74 TATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML----------- 136 (618)
T ss_pred CCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------
Confidence 22222211 11223466777665433 3569999999995
Q ss_pred CCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCC
Q 014743 278 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGID 356 (419)
Q Consensus 278 ~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~d 356 (419)
....++.|+..|.+ ..+.+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+...++. ++..
T Consensus 137 -s~~a~NaLLKtLEE-----PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~A 207 (618)
T PRK14951 137 -TNTAFNAMLKTLEE-----PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQA 207 (618)
T ss_pred -CHHHHHHHHHhccc-----CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 23344555544443 34678888899889989888888 76 578999999999988888776654443 2223
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 357 LKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 357 l~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
+..|+..+.| +.+++.+++..+... +...|+.+++...
T Consensus 208 L~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~ 245 (618)
T PRK14951 208 LRLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQM 245 (618)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 6778888887 778888887655433 2335665555443
No 92
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.5e-15 Score=157.38 Aligned_cols=204 Identities=17% Similarity=0.309 Sum_probs=149.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC-----------
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC----------- 221 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~----------- 221 (419)
.++.+.+|++|+|++.+++.|.+++... +.|.++||+||+|+||||+|+.+|..++|
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 4678899999999999999999988753 45778999999999999999999985532
Q ss_pred -------------ceEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHHH
Q 014743 222 -------------TFIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQR 284 (419)
Q Consensus 222 -------------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~ 284 (419)
.++.+++++- .+-..++++.+.+... .+.|++|||+|.+ ....++
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L------------s~~A~N 134 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHML------------SNSAFN 134 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhC------------CHHHHH
Confidence 2455554321 1234577777776543 3569999999885 233455
Q ss_pred HHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHH
Q 014743 285 TMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEK 363 (419)
Q Consensus 285 ~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~ 363 (419)
.|+..|.+ ....+++|++|+.++.+.+.+++ |+ ..+.|.+++.++....+...+..-+.. ++..+..|+..
T Consensus 135 aLLK~LEe-----Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~ 206 (491)
T PRK14964 135 ALLKTLEE-----PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN 206 (491)
T ss_pred HHHHHHhC-----CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555544 34578889999999999999988 66 468999999999988888777654432 23346778888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 364 MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 364 t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
+.| +.+++.+++..+..++ + ..||.+++...
T Consensus 207 s~G-slR~alslLdqli~y~---~-~~It~e~V~~l 237 (491)
T PRK14964 207 SSG-SMRNALFLLEQAAIYS---N-NKISEKSVRDL 237 (491)
T ss_pred cCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHH
Confidence 876 8888888888776543 2 35777777654
No 93
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.70 E-value=1e-15 Score=169.88 Aligned_cols=203 Identities=21% Similarity=0.308 Sum_probs=151.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCce
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTF 223 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~ 223 (419)
...+..++.++|+++.++.+.+.+.. ...++++|+||||||||++++++|..+ +..+
T Consensus 166 ~~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~ 232 (852)
T TIGR03346 166 RAREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRL 232 (852)
T ss_pred HhhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeE
Confidence 34556778999999998888887765 345678999999999999999999864 5678
Q ss_pred EEEeCcchh--hhhhchhHHHHHHHHHHHHhh-CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCC
Q 014743 224 IRVSGSELV--QKYIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 300 (419)
Q Consensus 224 i~v~~s~l~--~~~~g~~~~~i~~lf~~a~~~-~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~ 300 (419)
+.++.+.++ .+|.|+.+..++.+|..+... .|+|||||||+.|++.+... +..+..+.|..++ .++
T Consensus 233 ~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~----~~~d~~~~Lk~~l-------~~g 301 (852)
T TIGR03346 233 LALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE----GAMDAGNMLKPAL-------ARG 301 (852)
T ss_pred EEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc----chhHHHHHhchhh-------hcC
Confidence 888888776 578899999999999988654 58999999999998654321 1233444444333 456
Q ss_pred CeEEEEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCC-----CHHHHHHHcCCCCH-
Q 014743 301 KIKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI-----DLKKIAEKMNGASG- 369 (419)
Q Consensus 301 ~v~VI~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~-----dl~~la~~t~G~sg- 369 (419)
.+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+...+.....+ .+...+..+.+|..
T Consensus 302 ~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~ 378 (852)
T TIGR03346 302 ELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD 378 (852)
T ss_pred ceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccc
Confidence 799999999875 47999999 996 58999999999999999887776554333 34556666666553
Q ss_pred ----HHHHHHHHHHHHHH
Q 014743 370 ----AELKAVCTEAGMFA 383 (419)
Q Consensus 370 ----adi~~l~~~A~~~a 383 (419)
.---.|+.+|+..+
T Consensus 379 r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 379 RFLPDKAIDLIDEAAARI 396 (852)
T ss_pred cCCchHHHHHHHHHHHHH
Confidence 34445666665443
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.69 E-value=5.3e-16 Score=157.45 Aligned_cols=185 Identities=19% Similarity=0.315 Sum_probs=129.7
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc----------------
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------------- 222 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~---------------- 222 (419)
.|++|+|++.+++.|++++..+...+. .++...+.++||+||||+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 578999999999999999987644322 3444567889999999999999999999865442
Q ss_pred -------eEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHH
Q 014743 223 -------FIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 291 (419)
Q Consensus 223 -------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~ 291 (419)
+..+... ...+ .-..++++++.+... .+.|+||||+|.+ .....+.|+..|.
T Consensus 80 ~~~~hpD~~~i~~~---~~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m------------~~~aanaLLk~LE 142 (394)
T PRK07940 80 LAGTHPDVRVVAPE---GLSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRL------------TERAANALLKAVE 142 (394)
T ss_pred hcCCCCCEEEeccc---cccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhc------------CHHHHHHHHHHhh
Confidence 1111111 0111 223477888777543 3469999999996 2344566666664
Q ss_pred HccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHH
Q 014743 292 QLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAE 371 (419)
Q Consensus 292 ~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgad 371 (419)
+ ...++++|++|+.++.+.|.+++ |+ ..+.|++|+.++....+... .++. ......++..+.|..+..
T Consensus 143 e-----p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 143 E-----PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRA 210 (394)
T ss_pred c-----CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHH
Confidence 3 34567777778779999999998 77 58999999999987777532 2222 233557888899988766
Q ss_pred HHHH
Q 014743 372 LKAV 375 (419)
Q Consensus 372 i~~l 375 (419)
+..+
T Consensus 211 ~~l~ 214 (394)
T PRK07940 211 RRLA 214 (394)
T ss_pred HHHh
Confidence 5543
No 95
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.3e-15 Score=159.17 Aligned_cols=204 Identities=18% Similarity=0.260 Sum_probs=141.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc----------
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------- 222 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~---------- 222 (419)
+++.+.+|++|+|++.+++.|..++... ..|..+||+|||||||||+|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 4778899999999999999999998763 345667999999999999999999876431
Q ss_pred -------------eEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 223 -------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 223 -------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
++.++.+. ..+-..++++.+.+.. ..+.||+|||+|.+ .....+.
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l------------s~~a~na 135 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM------------SKSAFNA 135 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc------------CHHHHHH
Confidence 33343321 1122345565554443 34679999999874 1223333
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHc
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKM 364 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t 364 (419)
+ +..++. ...++++|++||.+..+.+.+.+ |+. .+.|++|+.++....++..+..-++. ++..+..|+..+
T Consensus 136 L---Lk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s 207 (504)
T PRK14963 136 L---LKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLA 207 (504)
T ss_pred H---HHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4 444432 23568888899999999999988 764 78999999999999998877655442 222366788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 365 NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 365 ~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
.| +.+++.++++.+... ...+|.+++...+
T Consensus 208 ~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 208 DG-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred CC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 77 566666666654321 2357777766553
No 96
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.69 E-value=1.5e-15 Score=152.28 Aligned_cols=207 Identities=20% Similarity=0.319 Sum_probs=143.7
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc--------
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 222 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-------- 222 (419)
+.++.++.+|++|+|++++++.+.+.+... ..|..+|||||||+|||++|+++|..+.+.
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456778899999999999999999988652 456789999999999999999999876432
Q ss_pred ----------------eEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHH
Q 014743 223 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 223 ----------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
++.+++.. ......++++++.+... .+.||+|||+|.+. ...
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~ 133 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSA 133 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHH
Confidence 33333321 11223466777766543 24599999998852 223
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHH
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIA 361 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la 361 (419)
.+.++..+.+ ...++++|++|+.++.+.+.+.+ |+ ..+.|++|+.++...++...++..+.. ++..+..++
T Consensus 134 ~~~Ll~~le~-----~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~ 205 (355)
T TIGR02397 134 FNALLKTLEE-----PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIA 205 (355)
T ss_pred HHHHHHHHhC-----CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444444432 34578888899999988999988 77 478999999999999998887765432 222355667
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
..+.| +.+.+.+.+..+...+ . ..+|.+|+..++
T Consensus 206 ~~~~g-~~~~a~~~lekl~~~~---~-~~it~~~v~~~~ 239 (355)
T TIGR02397 206 RAADG-SLRDALSLLDQLISFG---N-GNITYEDVNELL 239 (355)
T ss_pred HHcCC-ChHHHHHHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 77766 6666666666554432 2 247777776544
No 97
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.69 E-value=7.6e-16 Score=154.95 Aligned_cols=244 Identities=25% Similarity=0.347 Sum_probs=161.8
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhc-CCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh-hhhc-
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESL-GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG- 237 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~-gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~-~~~g- 237 (419)
+.|+||+++++.+.-++.....+..+...+ +-.+|+++||+||||||||++|++||..++.+|+.++++.+.. .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 468999999999998887532222111111 1235689999999999999999999999999999999998874 6777
Q ss_pred hhHHHHHHHHHHHH------------------------------------------------------------------
Q 014743 238 EGSRMVRELFVMAR------------------------------------------------------------------ 251 (419)
Q Consensus 238 ~~~~~i~~lf~~a~------------------------------------------------------------------ 251 (419)
+.+..++.+|+.|.
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 45666666666550
Q ss_pred -------------------------------------------------------------------------hhCCceE
Q 014743 252 -------------------------------------------------------------------------EHAPSII 258 (419)
Q Consensus 252 -------------------------------------------------------------------------~~~psVl 258 (419)
.....||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 1234599
Q ss_pred EecccccccccccCCCCCCCCHHHHHHHHHHHHHcc-----ccccCCCeEEEEEeC----CcchhhHHhcCCCceeEEEE
Q 014743 259 FMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD-----GFEASNKIKVLMATN----RIDILDQALLRPGRIDRKIE 329 (419)
Q Consensus 259 ~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~-----~~~~~~~v~VI~tTn----~~~~ld~allr~gRfd~~I~ 329 (419)
||||||+|+.+..+.+..-...-+|+.|+.++..-. +.-..+++++|++.. .|+++-|+|.- ||...+.
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 329 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVE 329 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 999999999765322111122347777777764310 111235788888653 57788899965 9999999
Q ss_pred cCCCCHHHHHHHHH----HHHhh----cccC------CCCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHh--
Q 014743 330 FPNPNEESRLDILK----IHSRR----MNLM------RGIDLKKIAEKM-------NGASGAELKAVCTEAGMFALRE-- 386 (419)
Q Consensus 330 ~~~P~~~~r~~Il~----~~~~~----~~~~------~~~dl~~la~~t-------~G~sgadi~~l~~~A~~~a~~~-- 386 (419)
+.+++.++...||. ..++. +... .+--+..||... .+.-.+-|..++.....-+.-+
T Consensus 330 L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p 409 (441)
T TIGR00390 330 LQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAP 409 (441)
T ss_pred CCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCC
Confidence 99999999999983 12221 1111 111244555543 4555566666666554443322
Q ss_pred ----cCCCCCHHHHHHHHHHHHhh
Q 014743 387 ----RRIHVTQEDFEMAVAKVMKK 406 (419)
Q Consensus 387 ----~~~~vt~eD~~~Al~~v~~~ 406 (419)
....|+.+.+...+..++..
T Consensus 410 ~~~~~~v~I~~~~V~~~l~~~~~~ 433 (441)
T TIGR00390 410 DLSGQNITIDADYVSKKLGALVAD 433 (441)
T ss_pred CCCCCEEEECHHHHHhHHHHHHhc
Confidence 13468888888888777653
No 98
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.5e-15 Score=160.36 Aligned_cols=206 Identities=17% Similarity=0.225 Sum_probs=140.0
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc--------
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 222 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-------- 222 (419)
+..++.+.+|++|+|++.+++.|..++... +-+..+||+||+|||||++|+++|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 456788999999999999999999998752 345689999999999999999999977552
Q ss_pred ----------------eEEEeCcchhhhhhchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCCCHHH
Q 014743 223 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 223 ----------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
++.+++..- . .-..++.+.+.+. ...+.||||||+|.+ ....
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~--~----~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L------------t~~a 135 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASN--R----GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML------------TREA 135 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccc--c----CHHHHHHHHHHHHhhhhcCCceEEEEEChHhC------------CHHH
Confidence 344443210 0 1122334333332 334579999999996 2334
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHH
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIA 361 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la 361 (419)
++.|+..|.+ ...++++|++||.+..+.+.+++ |+. .+.|++++.++...+|+..+...++ .++..+..|+
T Consensus 136 ~naLLk~LEE-----P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA 207 (624)
T PRK14959 136 FNALLKTLEE-----PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIA 207 (624)
T ss_pred HHHHHHHhhc-----cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555543 23578889999999989888887 764 6899999999999888876655443 1223366777
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
..+.| +.+++..++..+. + .+...|+.+++..+
T Consensus 208 ~~s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~ 240 (624)
T PRK14959 208 RRAAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGV 240 (624)
T ss_pred HHcCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHH
Confidence 77776 5555555555432 2 23335676665443
No 99
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.6e-15 Score=159.52 Aligned_cols=206 Identities=17% Similarity=0.289 Sum_probs=144.0
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC--------
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------- 221 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~-------- 221 (419)
.+.++++|.+|++|+|++.+++.+..++... ..+.++||+||+|||||++|+++|..+.|
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~ 72 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC 72 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3566788999999999999999999988652 45678999999999999999999987643
Q ss_pred ----------------ceEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHH
Q 014743 222 ----------------TFIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 222 ----------------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
.++.++++. ..+-..++.+.+.+... ...|++|||+|.+ ...
T Consensus 73 Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L------------t~~ 134 (605)
T PRK05896 73 CNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML------------STS 134 (605)
T ss_pred CcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC------------CHH
Confidence 123333221 01223466666655443 3469999999985 233
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHH
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKI 360 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~l 360 (419)
.++.|+..|.+. ...+++|++|+.+..+.+.+++ |+. .+.|++|+.++....+...+...+. .++..+..+
T Consensus 135 A~NaLLKtLEEP-----p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~L 206 (605)
T PRK05896 135 AWNALLKTLEEP-----PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKI 206 (605)
T ss_pred HHHHHHHHHHhC-----CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 456666666543 4578888899999999999988 764 7899999999999888876655432 122336677
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014743 361 AEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 398 (419)
Q Consensus 361 a~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~ 398 (419)
+..+.| +.+++..++....... + ..++.+++..
T Consensus 207 a~lS~G-dlR~AlnlLekL~~y~---~-~~It~e~V~e 239 (605)
T PRK05896 207 ADLADG-SLRDGLSILDQLSTFK---N-SEIDIEDINK 239 (605)
T ss_pred HHHcCC-cHHHHHHHHHHHHhhc---C-CCCCHHHHHH
Confidence 878777 6667667766543322 2 2266665555
No 100
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.68 E-value=8e-16 Score=154.88 Aligned_cols=244 Identities=24% Similarity=0.367 Sum_probs=161.4
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCC-CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh-hhhc-
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGI-AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIG- 237 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi-~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~-~~~g- 237 (419)
..|+|++++++.+..++....++..+...... ..|.++||+||||||||++|++||..++.+|+.++++++.. .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 46999999999999988653222111111100 13689999999999999999999999999999999998885 6888
Q ss_pred hhHHHHHHHHHHHH------------------------------------------------------------------
Q 014743 238 EGSRMVRELFVMAR------------------------------------------------------------------ 251 (419)
Q Consensus 238 ~~~~~i~~lf~~a~------------------------------------------------------------------ 251 (419)
..+..++.+|+.|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 44666777766661
Q ss_pred ------------------------------------------------------------------------hhCCceEE
Q 014743 252 ------------------------------------------------------------------------EHAPSIIF 259 (419)
Q Consensus 252 ------------------------------------------------------------------------~~~psVl~ 259 (419)
...-.|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01335999
Q ss_pred ecccccccccccCCCCCCCCHHHHHHHHHHHHHcc-----ccccCCCeEEEEEe----CCcchhhHHhcCCCceeEEEEc
Q 014743 260 MDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD-----GFEASNKIKVLMAT----NRIDILDQALLRPGRIDRKIEF 330 (419)
Q Consensus 260 iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~-----~~~~~~~v~VI~tT----n~~~~ld~allr~gRfd~~I~~ 330 (419)
|||||+|+....+.+..-...-+|+.|+.++..-. +.-+.+++++|++- ..|+++-|+|.- ||...+.+
T Consensus 255 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 332 (443)
T PRK05201 255 IDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVEL 332 (443)
T ss_pred EEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 99999999775322111122347777777764310 11133578888764 357788899965 99999999
Q ss_pred CCCCHHHHHHHHH----HHHhhcc---cCCCC-------CHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHhc--
Q 014743 331 PNPNEESRLDILK----IHSRRMN---LMRGI-------DLKKIAEKM-------NGASGAELKAVCTEAGMFALRER-- 387 (419)
Q Consensus 331 ~~P~~~~r~~Il~----~~~~~~~---~~~~~-------dl~~la~~t-------~G~sgadi~~l~~~A~~~a~~~~-- 387 (419)
.+++.++...||. ..++... -..++ -+..||... .+.-.+-|..++.....-..-+.
T Consensus 333 ~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~ 412 (443)
T PRK05201 333 DALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPD 412 (443)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCC
Confidence 9999999999983 2222211 01122 245555543 35455667666666554443221
Q ss_pred ----CCCCCHHHHHHHHHHHHhh
Q 014743 388 ----RIHVTQEDFEMAVAKVMKK 406 (419)
Q Consensus 388 ----~~~vt~eD~~~Al~~v~~~ 406 (419)
...|+.+-+...+..++..
T Consensus 413 ~~~~~v~I~~~~V~~~l~~l~~~ 435 (443)
T PRK05201 413 MSGETVTIDAAYVDEKLGDLVKD 435 (443)
T ss_pred CCCCEEEECHHHHHHHHHHHHhc
Confidence 2568888887777777653
No 101
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.8e-15 Score=158.52 Aligned_cols=204 Identities=17% Similarity=0.193 Sum_probs=140.6
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc----------
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------- 222 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~---------- 222 (419)
+++.+.+|++|+|++.+++.|..++... ..+..+||+||+|||||++|+++|+.+.|.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 5788899999999999999999999763 455668999999999999999999876542
Q ss_pred ----------------eEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHH
Q 014743 223 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 223 ----------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
++.++++.. .+-..++++.+.+.. ..+.|++|||+|.+ ....
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L------------t~~A 134 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV------------TTAG 134 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC------------CHHH
Confidence 222322210 112334555444432 34569999999885 2345
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHH
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIA 361 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la 361 (419)
++.|+..|.+ ...++++|++|+.++.+.+.+++ |. ..+.|.+++.++..+.+...+...+.. ++..+..++
T Consensus 135 ~NALLK~LEE-----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia 206 (584)
T PRK14952 135 FNALLKIVEE-----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVI 206 (584)
T ss_pred HHHHHHHHhc-----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666654 34678899999999999999988 64 578999999999888888777665432 222345566
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 398 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~ 398 (419)
..+.| +.+++.+++......+ ....||.+++..
T Consensus 207 ~~s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~ 239 (584)
T PRK14952 207 RAGGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALG 239 (584)
T ss_pred HHcCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHH
Confidence 66655 7777777777654332 133455544443
No 102
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.7e-15 Score=157.40 Aligned_cols=206 Identities=18% Similarity=0.287 Sum_probs=143.6
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC----------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---------- 221 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~---------- 221 (419)
..++.+.+|++|+|++.+++.|..++... ..+..+||+||+|||||++|+++|+.+.+
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 45678889999999999999999998752 34567899999999999999999987654
Q ss_pred --------------ceEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHH
Q 014743 222 --------------TFIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 222 --------------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
.++.+++.. ..| -..++++.+.+.. ..+.|+||||+|.+ ....+
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas----~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~l------------s~~a~ 136 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAAS----RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHML------------SKQSF 136 (546)
T ss_pred ccHHHHHHhcCCCCceEEeeccc----ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhc------------cHHHH
Confidence 233333211 111 1234555554432 34569999999885 23456
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~ 362 (419)
+.|+..|.+. .+.+++|++|+.+..+.+.+++ |+ ..+.|.+++.++....+...+...++. ++..+..|+.
T Consensus 137 naLLK~LEep-----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 137 NALLKTLEEP-----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HHHHHHHhcC-----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6666666543 4577788888888888888887 76 689999999999888888766654432 2233566777
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
.+.| +.+++.+++..+...+ ...++.+++..++
T Consensus 209 ~s~G-dlR~alnlLek~i~~~----~~~It~~~V~~~l 241 (546)
T PRK14957 209 HAKG-SLRDALSLLDQAISFC----GGELKQAQIKQML 241 (546)
T ss_pred HcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 7765 7777777777665432 1356666666543
No 103
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.68 E-value=1.8e-15 Score=144.67 Aligned_cols=194 Identities=23% Similarity=0.297 Sum_probs=132.5
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC------c
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC------T 222 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~------~ 222 (419)
+-|.+++.+.+|+++.||+.+++.|..++.. ....++|||||||||||+.|+++|.++.+ .
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~r 90 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCR 90 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccc
Confidence 3467789999999999999999999999865 34568999999999999999999998865 2
Q ss_pred eEEEeCcchhhhhhchhHHHHHHHHHHHHh---------hC-CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHH
Q 014743 223 FIRVSGSELVQKYIGEGSRMVRELFVMARE---------HA-PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ 292 (419)
Q Consensus 223 ~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~---------~~-psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~ 292 (419)
+...+.|+..+..++. .++ .-|+.... .+ +.|++|||.|.+ .++.+..|...++.
T Consensus 91 vl~lnaSderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm------------tsdaq~aLrr~mE~ 155 (346)
T KOG0989|consen 91 VLELNASDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSM------------TSDAQAALRRTMED 155 (346)
T ss_pred hhhhcccccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhh------------hHHHHHHHHHHHhc
Confidence 3334444443332221 111 22332222 12 269999999995 34556666666543
Q ss_pred ccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCC-CCHHHHHHHcCCCCHHH
Q 014743 293 LDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLKKIAEKMNGASGAE 371 (419)
Q Consensus 293 l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~G~sgad 371 (419)
....+.+|+.||+++.+++.+.+ |.- .+.|++...+.....|+....+-++.-+ ..++.|+..++| +-++
T Consensus 156 -----~s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~ 226 (346)
T KOG0989|consen 156 -----FSRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRR 226 (346)
T ss_pred -----cccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHH
Confidence 24678999999999999999988 775 5678887777777777766555444322 237778888887 3333
Q ss_pred HHHHHHHH
Q 014743 372 LKAVCTEA 379 (419)
Q Consensus 372 i~~l~~~A 379 (419)
-...++.+
T Consensus 227 Ait~Lqsl 234 (346)
T KOG0989|consen 227 AITTLQSL 234 (346)
T ss_pred HHHHHHHh
Confidence 33344443
No 104
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.67 E-value=3.6e-15 Score=147.15 Aligned_cols=208 Identities=22% Similarity=0.270 Sum_probs=140.5
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC-----Cce
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTF 223 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~-----~~~ 223 (419)
.+|++++.|.+|+++.|++++++.+..++..+ ...+++|+||||||||++++++++++. ..+
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~ 71 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENF 71 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccce
Confidence 46888999999999999999999999988642 223589999999999999999998762 345
Q ss_pred EEEeCcchhhhhhchhHHHHH-HHHHHHHh-----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc
Q 014743 224 IRVSGSELVQKYIGEGSRMVR-ELFVMARE-----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297 (419)
Q Consensus 224 i~v~~s~l~~~~~g~~~~~i~-~lf~~a~~-----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~ 297 (419)
+.+++++... ...++ .+...+.. ..+.+|+|||+|.+. ...+..+..+++..
T Consensus 72 i~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~------------~~~~~~L~~~le~~---- 129 (319)
T PRK00440 72 LELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT------------SDAQQALRRTMEMY---- 129 (319)
T ss_pred EEeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC------------HHHHHHHHHHHhcC----
Confidence 5555443211 11122 22222222 235699999998862 23345566655433
Q ss_pred cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 014743 298 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVC 376 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~ 376 (419)
..++.+|+++|.+..+.+.+.+ |+. .+.|++|+.++...++...+...++. ++..+..++..+.| +.+.+.+.+
T Consensus 130 -~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l 204 (319)
T PRK00440 130 -SQNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINAL 204 (319)
T ss_pred -CCCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 2356778888888878778877 665 58999999999999999887765442 23347778887766 444544555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHH
Q 014743 377 TEAGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 377 ~~A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
+.+... ...||.+++..++.
T Consensus 205 ~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 205 QAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHc-----CCCCCHHHHHHHhC
Confidence 443322 34677777766653
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.5e-15 Score=164.54 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=135.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc---------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 222 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~--------- 222 (419)
..++.+.+|++|+|++.+++.|..++... +.+..+||+||+|||||++|++||+.+.|.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg 73 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG 73 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence 36788999999999999999999998752 345668999999999999999999987642
Q ss_pred -----------------eEEEeCcchhhhhhchhHHHHHHHHHHH----HhhCCceEEecccccccccccCCCCCCCCHH
Q 014743 223 -----------------FIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 223 -----------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a----~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
++.+++... ..-..+|++.+.+ ....+.|+||||+|.| ...
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l------------t~~ 135 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV------------TPQ 135 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc------------CHH
Confidence 222222110 0122344443333 2345679999999996 345
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHH
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKI 360 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~l 360 (419)
.++.|+.+|.+. ..++++|++|+.++.|.+.+++ |+ ..+.|..++.++..++|...++..++. .+..+..|
T Consensus 136 a~NaLLK~LEEp-----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lL 207 (824)
T PRK07764 136 GFNALLKIVEEP-----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLV 207 (824)
T ss_pred HHHHHHHHHhCC-----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 667777777654 4578888889988888888887 65 578999999999988888777655442 22235567
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q 014743 361 AEKMNGASGAELKAVCTEAG 380 (419)
Q Consensus 361 a~~t~G~sgadi~~l~~~A~ 380 (419)
+..+.| +.+++.+++....
T Consensus 208 a~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 208 IRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 777766 6666666665533
No 106
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.67 E-value=5.7e-15 Score=153.27 Aligned_cols=221 Identities=20% Similarity=0.307 Sum_probs=147.0
Q ss_pred CCCCccc-ccCcHH--HHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEe
Q 014743 156 PDSTYDM-IGGLDQ--QIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVS 227 (419)
Q Consensus 156 p~~~~~~-I~G~~~--~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~ 227 (419)
|..+|++ ++|... +...+..+...| | ...+.++||||||||||+|++++++++ +..+++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 5567877 445332 455555544332 1 233569999999999999999999876 56688999
Q ss_pred CcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEE
Q 014743 228 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 307 (419)
Q Consensus 228 ~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~t 307 (419)
+.++...+..........-|.. ....+.+|+|||++.+.++ ...+..+..+++.+. ..+..+||.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~dlLiiDDi~~l~~~----------~~~~~~l~~~~n~l~---~~~~~iiits 251 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKE-KYRSVDVLLIDDIQFLAGK----------ERTQEEFFHTFNALH---EAGKQIVLTS 251 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHH-HHhcCCEEEEehhhhhcCC----------HHHHHHHHHHHHHHH---HCCCcEEEEC
Confidence 9988777655432221122322 2225789999999997532 223455666665542 2233344444
Q ss_pred eCCcch---hhHHhcCCCcee--EEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 014743 308 TNRIDI---LDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGM 381 (419)
Q Consensus 308 Tn~~~~---ld~allr~gRfd--~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~~t~G~sgadi~~l~~~A~~ 381 (419)
+..|.. +++.+.+ ||. ..+.|++|+.+.|..|++......++ .++.-+..||....| +.+.|..++.....
T Consensus 252 ~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 252 DRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred CCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 444444 6788887 985 58999999999999999988775432 122236778888776 77888888877766
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 382 FALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 382 ~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
.+... ...+|.+.+..++..+..
T Consensus 329 ~~~~~-~~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 329 YASLT-GKPITLELAKEALKDLLA 351 (450)
T ss_pred HHHhh-CCCCCHHHHHHHHHHhhc
Confidence 66443 345889999999888753
No 107
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=4.5e-15 Score=157.32 Aligned_cols=203 Identities=21% Similarity=0.310 Sum_probs=145.2
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC-----------
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC----------- 221 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~----------- 221 (419)
.++.+.+|++|+|++.+++.+.+++... ..+..+||+||+|||||++|+.+|..+.|
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4678899999999999999999998752 45677999999999999999999987643
Q ss_pred -------------ceEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHH
Q 014743 222 -------------TFIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 284 (419)
Q Consensus 222 -------------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~ 284 (419)
.++.++++. +.+-..++++.+.+.. ..+.|++|||+|.+. ....+
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~n 137 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFN 137 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHH
Confidence 233443321 1233456777777653 335699999999862 23344
Q ss_pred HHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHH
Q 014743 285 TMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEK 363 (419)
Q Consensus 285 ~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~ 363 (419)
.|+..|.+ ...++++|++|+.++.+++.+++ |+. .+.|++|+.++....++..+...++. ++..+..++..
T Consensus 138 aLLKtLEe-----pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~ 209 (559)
T PRK05563 138 ALLKTLEE-----PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARA 209 (559)
T ss_pred HHHHHhcC-----CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45444432 34578888888889999999988 775 57899999999999988877665442 22336677888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014743 364 MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 398 (419)
Q Consensus 364 t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~ 398 (419)
+.| +.+++.+++..+...+ ...+|.+|+..
T Consensus 210 s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~ 239 (559)
T PRK05563 210 AEG-GMRDALSILDQAISFG----DGKVTYEDALE 239 (559)
T ss_pred cCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 777 8888888887665442 23466655443
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.5e-15 Score=159.81 Aligned_cols=206 Identities=18% Similarity=0.276 Sum_probs=144.3
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc---------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 222 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~--------- 222 (419)
..++.+.+|++|+|++.+++.+..++... +.+..+||+||||||||++|+++|+.+.+.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34677889999999999999999998763 445678999999999999999999987552
Q ss_pred ---------------eEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHH
Q 014743 223 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 223 ---------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
++.++++. ...-..++++.+.+... .+.|+||||+|.+ ....+
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l------------s~~a~ 136 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML------------SKSAF 136 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC------------CHHHH
Confidence 22222211 11233466777666432 3469999999985 23345
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~ 362 (419)
+.|+..|.+ ..+++++|++|+.+..+.+.+++ |+ ..+.|++++.++....+...+..-++. .+..+..|+.
T Consensus 137 naLLK~LEe-----pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~ 208 (527)
T PRK14969 137 NAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLAR 208 (527)
T ss_pred HHHHHHHhC-----CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555544 34678888888888888888877 66 578999999999888777666544432 2223566777
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
.+.| +.+++.+++..+... +...|+.+++...+
T Consensus 209 ~s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 209 AAAG-SMRDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 7776 778888888766543 34456777666554
No 109
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.67 E-value=7.5e-15 Score=150.40 Aligned_cols=220 Identities=21% Similarity=0.304 Sum_probs=143.8
Q ss_pred CCCCccc-ccCcHH--HHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEe
Q 014743 156 PDSTYDM-IGGLDQ--QIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVS 227 (419)
Q Consensus 156 p~~~~~~-I~G~~~--~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~ 227 (419)
|..+|++ ++|... +...+.+....| | .....++||||||||||+|++++++++ +..+++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 4567777 556544 233333333322 1 234578999999999999999999876 56788999
Q ss_pred CcchhhhhhchhHH-HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEE
Q 014743 228 GSELVQKYIGEGSR-MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 306 (419)
Q Consensus 228 ~s~l~~~~~g~~~~-~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~ 306 (419)
+.++...+...... .+..+.... ..+.+|+|||++.+.++ ...+..+..+++.+. ..+..+||.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~----------~~~~~~l~~~~n~~~---~~~~~iiit 238 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAGK----------ERTQEEFFHTFNALH---ENGKQIVLT 238 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcCC----------HHHHHHHHHHHHHHH---HCCCCEEEe
Confidence 98887665543221 122222222 24689999999997532 233455666666542 123334444
Q ss_pred EeCCcch---hhHHhcCCCcee--EEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q 014743 307 ATNRIDI---LDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAG 380 (419)
Q Consensus 307 tTn~~~~---ld~allr~gRfd--~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~ 380 (419)
++..|.. +++.+.+ ||. ..+.|++|+.++|..|++..+...++. ++..+..||....+ +.++|..++....
T Consensus 239 s~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 239 SDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred cCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 4444554 4577877 886 479999999999999999888765442 23336778887776 7788888887766
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 381 MFALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 381 ~~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
..|.. ....+|.+.+..++.....
T Consensus 316 ~~a~~-~~~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 316 AYASL-TGKPITLELAKEALKDLLR 339 (405)
T ss_pred HHHHH-hCCCCCHHHHHHHHHHhcc
Confidence 66543 3356788888888877654
No 110
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.66 E-value=3.3e-15 Score=159.80 Aligned_cols=219 Identities=19% Similarity=0.284 Sum_probs=146.8
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCceEEEeCcc
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGSE 230 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~i~v~~s~ 230 (419)
+.|.|.++++++|..++...+.. -.++..++++||||||||++++.+..++ ...+++|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 68999999999999999764332 1233345699999999999999998754 25678999965
Q ss_pred hhhhh---------h-ch-------hHHHHHHHHHHHH--hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHH
Q 014743 231 LVQKY---------I-GE-------GSRMVRELFVMAR--EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 291 (419)
Q Consensus 231 l~~~~---------~-g~-------~~~~i~~lf~~a~--~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~ 291 (419)
+...+ + +. ....+..+|.... ...+.||+|||||.|... .+.+|..+++
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK------------~QDVLYnLFR 894 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK------------TQKVLFTLFD 894 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc------------HHHHHHHHHH
Confidence 43221 1 11 1234456665542 233569999999998542 1355666666
Q ss_pred HccccccCCCeEEEEEeCC---cchhhHHhcCCCceeE-EEEcCCCCHHHHHHHHHHHHhhcc-cCCCCCHHHHHHHcCC
Q 014743 292 QLDGFEASNKIKVLMATNR---IDILDQALLRPGRIDR-KIEFPNPNEESRLDILKIHSRRMN-LMRGIDLKKIAEKMNG 366 (419)
Q Consensus 292 ~l~~~~~~~~v~VI~tTn~---~~~ld~allr~gRfd~-~I~~~~P~~~~r~~Il~~~~~~~~-~~~~~dl~~la~~t~G 366 (419)
... .....++||+++|. ++.++|.+.+ ||.. .|.|++++.+++.+||+..+.... ...+.-+..+|+....
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 433 13457899999986 4566777777 6643 588999999999999998877532 2222225556664443
Q ss_pred CC--HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 014743 367 AS--GAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 406 (419)
Q Consensus 367 ~s--gadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~ 406 (419)
.+ .+..-.+|+.|+..+ +...|+.+|+..|+.++...
T Consensus 971 ~SGDARKALDILRrAgEik---egskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFENK---RGQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred cCCHHHHHHHHHHHHHhhc---CCCccCHHHHHHHHHHHHhh
Confidence 22 244446777777642 44589999999999877543
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=4.1e-15 Score=150.35 Aligned_cols=214 Identities=18% Similarity=0.235 Sum_probs=141.4
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCc
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s 229 (419)
.+.+++++.+|++|+|++.+++.+.+.+... ..+.++|||||||+|||++++++|+.+.+......+.
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 73 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNE 73 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3556788999999999999999999998763 4567899999999999999999999775421111000
Q ss_pred ch------hhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC
Q 014743 230 EL------VQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 299 (419)
Q Consensus 230 ~l------~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~ 299 (419)
.+ .+.........++.+++.+... .+.||+|||+|.+. ....+.++..+.. ..
T Consensus 74 ~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------~~~~~~ll~~le~-----~~ 136 (367)
T PRK14970 74 DFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------SAAFNAFLKTLEE-----PP 136 (367)
T ss_pred CCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------HHHHHHHHHHHhC-----CC
Confidence 00 0000111234566777665432 35699999998852 2223444444432 23
Q ss_pred CCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHHHcCCCCHHHHHHHHHH
Q 014743 300 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTE 378 (419)
Q Consensus 300 ~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~~t~G~sgadi~~l~~~ 378 (419)
..+++|++|+....+.+++.+ |+. .+.|++|+.++...++.....+.++ .++..+..|+..+.| +.+.+.+.+..
T Consensus 137 ~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 137 AHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred CceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 456777788888888888887 553 6899999999999888877665554 233346677777665 66666666655
Q ss_pred HHHHHHHhcCCCCCHHHHHHHH
Q 014743 379 AGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 379 A~~~a~~~~~~~vt~eD~~~Al 400 (419)
...++ ... +|.+++...+
T Consensus 213 l~~y~---~~~-it~~~v~~~~ 230 (367)
T PRK14970 213 VVTFC---GKN-ITRQAVTENL 230 (367)
T ss_pred HHHhc---CCC-CCHHHHHHHh
Confidence 44333 222 6666665544
No 112
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=6.4e-15 Score=153.51 Aligned_cols=207 Identities=19% Similarity=0.301 Sum_probs=144.1
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc--------
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 222 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-------- 222 (419)
+..++++.+|++++|++.+++.+.+++... ..+..+|||||+|+|||++|+.+|..+.+.
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 456788899999999999999999999652 345678999999999999999999976541
Q ss_pred ----------------eEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHH
Q 014743 223 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 223 ----------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
++.++++. ..+-..++.+.+.+... .+.|++|||+|.+. ...
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a 135 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEA 135 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHH
Confidence 11121110 01123355666555433 35699999999852 233
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCC-CCCHHHHH
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMR-GIDLKKIA 361 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~-~~dl~~la 361 (419)
.+.|+..+.+ ....+++|++|+.++.+.+.+.+ |+. .+.|++|+.++....+...++..++.- +..+..|+
T Consensus 136 ~naLLk~LEe-----pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La 207 (486)
T PRK14953 136 FNALLKTLEE-----PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA 207 (486)
T ss_pred HHHHHHHHhc-----CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4555555543 24567788888888889998887 664 689999999999999988877665432 22356777
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
..+.| +.+++.+++..+...+ ...+|.+++..++
T Consensus 208 ~~s~G-~lr~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 208 QASEG-GMRDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 77776 6677777777665432 3356766666643
No 113
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.66 E-value=4.1e-15 Score=160.99 Aligned_cols=209 Identities=22% Similarity=0.323 Sum_probs=140.4
Q ss_pred ccccCCCCCcccccCcHHHHH---HHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEe
Q 014743 151 KVEKVPDSTYDMIGGLDQQIK---EIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 227 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~---~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~ 227 (419)
..++.++.++++++|++..+. .+++++.. ....+++||||||||||++|+++|+..+..|+.++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 445677889999999999884 56666653 23457999999999999999999999999998888
Q ss_pred CcchhhhhhchhHHHHHHHHHHHH-----hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCe
Q 014743 228 GSELVQKYIGEGSRMVRELFVMAR-----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 302 (419)
Q Consensus 228 ~s~l~~~~~g~~~~~i~~lf~~a~-----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 302 (419)
++.. + ...++..+..+. ...+.||||||||.+. ...+..|...+. .+.+
T Consensus 85 a~~~-----~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln------------~~qQdaLL~~lE-------~g~I 138 (725)
T PRK13341 85 AVLA-----G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN------------KAQQDALLPWVE-------NGTI 138 (725)
T ss_pred hhhh-----h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC------------HHHHHHHHHHhc-------CceE
Confidence 7531 1 112333343332 1345799999999862 233444544442 2456
Q ss_pred EEEEEeC--CcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhc-------cc-CCCCCHHHHHHHcCCCCHHHH
Q 014743 303 KVLMATN--RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM-------NL-MRGIDLKKIAEKMNGASGAEL 372 (419)
Q Consensus 303 ~VI~tTn--~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~-------~~-~~~~dl~~la~~t~G~sgadi 372 (419)
++|++|+ ....+++++++ |. ..+.|++++.+++..|++..+... .+ .++.-+..|+..+.| ..+.+
T Consensus 139 iLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~l 214 (725)
T PRK13341 139 TLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSL 214 (725)
T ss_pred EEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHH
Confidence 6666653 33468889988 64 468999999999999999877621 11 112225677877765 66777
Q ss_pred HHHHHHHHHHHHHhc--CCCCCHHHHHHHHHH
Q 014743 373 KAVCTEAGMFALRER--RIHVTQEDFEMAVAK 402 (419)
Q Consensus 373 ~~l~~~A~~~a~~~~--~~~vt~eD~~~Al~~ 402 (419)
.++++.+...+.... ...++.+++..++.+
T Consensus 215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 215 LNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 777777654332111 234787888877766
No 114
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=5.1e-15 Score=158.55 Aligned_cols=212 Identities=22% Similarity=0.341 Sum_probs=145.9
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEE---e
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV---S 227 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v---~ 227 (419)
+..+++|.+|++|+|++.+++.|..++... ..+..+||+||+|+|||++|+++|..+.|.--.. .
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 556788999999999999999999999763 4567789999999999999999998775531100 0
Q ss_pred Ccch---hhh----hhc-----hhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHH
Q 014743 228 GSEL---VQK----YIG-----EGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 291 (419)
Q Consensus 228 ~s~l---~~~----~~g-----~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~ 291 (419)
|... ... +.+ .+...++++.+.+... .+.|++|||+|.+. ...++.|+..|.
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLE 143 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLE 143 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhh
Confidence 1000 000 000 1234477777776643 35699999999852 334555555555
Q ss_pred HccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCC-CCHHHHHHHcCCCCHH
Q 014743 292 QLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLKKIAEKMNGASGA 370 (419)
Q Consensus 292 ~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~G~sga 370 (419)
+ ....+++|++|+.++.+.+.+++ |+. .+.|.+|+.++....+...+...++.-+ ..+..+|..+.| +.+
T Consensus 144 E-----PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR 214 (725)
T PRK07133 144 E-----PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLR 214 (725)
T ss_pred c-----CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 4 34578888899999999999988 774 7899999999999888876665443222 225667777776 667
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 371 ELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 371 di~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
++..++..+...+ ...++.+++..+
T Consensus 215 ~AlslLekl~~y~----~~~It~e~V~el 239 (725)
T PRK07133 215 DALSIAEQVSIFG----NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 7777776654332 223666666543
No 115
>PRK06893 DNA replication initiation factor; Validated
Probab=99.65 E-value=1.3e-14 Score=137.31 Aligned_cols=211 Identities=13% Similarity=0.166 Sum_probs=129.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcc
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE 230 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~ 230 (419)
-.++.+|++.+|.++.. ....+.. .+.......++||||||||||+|++++|+++ +....++....
T Consensus 9 ~~~~~~fd~f~~~~~~~--~~~~~~~---------~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 9 QIDDETLDNFYADNNLL--LLDSLRK---------NFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCcccccccccCChHH--HHHHHHH---------HhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 45667888877655421 1122211 1111223468999999999999999999875 33444444332
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC-
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN- 309 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn- 309 (419)
... ....+++.. ..+.+|+|||++.+.+ +......+..+++.+. ..++.++|+|+|
T Consensus 78 ~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~----------~~~~~~~l~~l~n~~~---~~~~~illits~~ 134 (229)
T PRK06893 78 SQY--------FSPAVLENL--EQQDLVCLDDLQAVIG----------NEEWELAIFDLFNRIK---EQGKTLLLISADC 134 (229)
T ss_pred hhh--------hhHHHHhhc--ccCCEEEEeChhhhcC----------ChHHHHHHHHHHHHHH---HcCCcEEEEeCCC
Confidence 111 111223222 2467999999999742 2344556777777653 233444455544
Q ss_pred Ccchhh---HHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 014743 310 RIDILD---QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALR 385 (419)
Q Consensus 310 ~~~~ld---~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~ 385 (419)
.|..++ +.+.+..+++..+.+++|+.++|.+|++.......+. ++.-+..|+.+.+| +.+.+..++..-...+..
T Consensus 135 ~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 213 (229)
T PRK06893 135 SPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQ 213 (229)
T ss_pred ChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh
Confidence 566554 7888744456788999999999999999776543332 22236678888877 667777777655433443
Q ss_pred hcCCCCCHHHHHHHH
Q 014743 386 ERRIHVTQEDFEMAV 400 (419)
Q Consensus 386 ~~~~~vt~eD~~~Al 400 (419)
....+|...+.+++
T Consensus 214 -~~~~it~~~v~~~L 227 (229)
T PRK06893 214 -AQRKLTIPFVKEIL 227 (229)
T ss_pred -cCCCCCHHHHHHHh
Confidence 33468888887765
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.3e-15 Score=151.07 Aligned_cols=209 Identities=16% Similarity=0.228 Sum_probs=140.7
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc----------
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------- 222 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~---------- 222 (419)
+++.+.+|++|+|++.+++.|..++... ..|..+||+||||||||++|+++|+.+.+.
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 4678889999999999999999988753 456779999999999999999999987552
Q ss_pred ----------------------eEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCC
Q 014743 223 ----------------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSG 276 (419)
Q Consensus 223 ----------------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~ 276 (419)
++.+++.. ...-..++++.+.+.. ....|+||||+|.+.
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------- 140 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------- 140 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC---------
Confidence 11121111 0112345555555532 234699999998852
Q ss_pred CCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCC
Q 014743 277 NGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGI 355 (419)
Q Consensus 277 ~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~ 355 (419)
...++.++..+.+ ....+++|++|+.+..+.+.+.+ |+. .+.|++++.++....+...++..+. .++.
T Consensus 141 ---~~~~~~LLk~LEe-----p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~ 209 (397)
T PRK14955 141 ---IAAFNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDAD 209 (397)
T ss_pred ---HHHHHHHHHHHhc-----CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 2334445555543 34567777788888888888887 664 6889999998888888776654432 2223
Q ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHH
Q 014743 356 DLKKIAEKMNGASGAELKAVCTEAGMFALR-ERRIHVTQEDFEMAV 400 (419)
Q Consensus 356 dl~~la~~t~G~sgadi~~l~~~A~~~a~~-~~~~~vt~eD~~~Al 400 (419)
.+..|+..+.| +.+.+.+.+.....++.. .....|+.+|+...+
T Consensus 210 al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 210 ALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 36677778776 666777777665544421 123467777776544
No 117
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.6e-14 Score=143.83 Aligned_cols=221 Identities=20% Similarity=0.345 Sum_probs=155.2
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc-----eEEEeCcchhhhh
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-----FIRVSGSELVQKY 235 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-----~i~v~~s~l~~~~ 235 (419)
+.+.+.+++++++..++...+.+ ..|.++++|||||||||.+++.++.++... +++|+|..+-+.|
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 45899999999999998765443 456679999999999999999999976333 8999997654332
Q ss_pred ---------------hchh-HHHHHHHHHHHHh-hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc
Q 014743 236 ---------------IGEG-SRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA 298 (419)
Q Consensus 236 ---------------~g~~-~~~i~~lf~~a~~-~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~ 298 (419)
.|.. ......+++.... ..+.||++||+|.|.... . ..|.+++......
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-------~-----~~LY~L~r~~~~~-- 153 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-------G-----EVLYSLLRAPGEN-- 153 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-------c-----hHHHHHHhhcccc--
Confidence 1111 1122333333322 456689999999997543 1 5677777665433
Q ss_pred CCCeEEEEEeCCcc---hhhHHhcCCCce-eEEEEcCCCCHHHHHHHHHHHHhhcccCCCC---CHH---HHHHHcCCCC
Q 014743 299 SNKIKVLMATNRID---ILDQALLRPGRI-DRKIEFPNPNEESRLDILKIHSRRMNLMRGI---DLK---KIAEKMNGAS 368 (419)
Q Consensus 299 ~~~v~VI~tTn~~~---~ld~allr~gRf-d~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~---dl~---~la~~t~G~s 368 (419)
..++.||+.+|..+ .++|.+.+ +| ...|.||+++.++...|++......-..... -+. .++....| .
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-D 230 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-D 230 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-c
Confidence 45788999999875 66777765 44 3459999999999999998776542111111 132 33444445 4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 014743 369 GAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 369 gadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~ 407 (419)
.+-.-.+|+.|+..|.+++...++.+++..|...+-...
T Consensus 231 AR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~ 269 (366)
T COG1474 231 ARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDV 269 (366)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHH
Confidence 555568999999999999999999999999965554433
No 118
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.64 E-value=1.9e-14 Score=135.12 Aligned_cols=202 Identities=18% Similarity=0.265 Sum_probs=135.8
Q ss_pred CCcccc--cCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh
Q 014743 158 STYDMI--GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV 232 (419)
Q Consensus 158 ~~~~~I--~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~ 232 (419)
.+|++. ++.+..++.+++++.. ..+..++|+||+|||||++|+++++++ +.+++.++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 345554 3577788888887642 457889999999999999999999865 4678889988876
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC-Cc
Q 014743 233 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN-RI 311 (419)
Q Consensus 233 ~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn-~~ 311 (419)
... ..++... ..+.+|+|||+|.+.. +...+..+..+++.+. ..+. .+|+||+ .+
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~----------~~~~~~~L~~~l~~~~---~~~~-~iIits~~~~ 134 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAG----------QPEWQEALFHLYNRVR---EAGG-RLLIAGRAAP 134 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcC----------ChHHHHHHHHHHHHHH---HcCC-eEEEECCCCh
Confidence 432 1233322 2346999999998632 2233556666666542 1222 4555665 34
Q ss_pred chhh---HHhcCCCce--eEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 014743 312 DILD---QALLRPGRI--DRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALR 385 (419)
Q Consensus 312 ~~ld---~allr~gRf--d~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~ 385 (419)
..++ +.+.+ |+ ...+.+|+|+.+++..+++.+.....+. ++--+..|+.... -+.+++..+++++...+..
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH
Confidence 3332 66776 65 4789999999999999998776544332 2223567777544 4889999999987765555
Q ss_pred hcCCCCCHHHHHHHH
Q 014743 386 ERRIHVTQEDFEMAV 400 (419)
Q Consensus 386 ~~~~~vt~eD~~~Al 400 (419)
.+ ..|+.+.+.+.+
T Consensus 212 ~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AK-RKITIPFVKEVL 225 (226)
T ss_pred hC-CCCCHHHHHHHh
Confidence 44 568877766554
No 119
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.3e-14 Score=154.34 Aligned_cols=205 Identities=20% Similarity=0.302 Sum_probs=144.8
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc---------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------- 222 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~--------- 222 (419)
..++.+.+|++|+|++++++.|..++... ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 35678899999999999999999998752 456778999999999999999999876542
Q ss_pred ---------------eEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHH
Q 014743 223 ---------------FIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 223 ---------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
++.+++.. ..+-..++++.+.+... .+.|++|||+|.+ ....+
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L------------t~~a~ 136 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML------------STNAF 136 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC------------CHHHH
Confidence 33333321 11223466776665432 3469999999985 23455
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~ 362 (419)
+.|+..|.+ ...++++|++|+.++.+.+.+++ |+ ..+.|..++.++....+...++..++. ++..+..|+.
T Consensus 137 naLLk~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~ 208 (576)
T PRK14965 137 NALLKTLEE-----PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVAR 208 (576)
T ss_pred HHHHHHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 666666654 34678899999999999999987 66 378899999988888877766554432 2334667888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
.+.| +.+++.+++..+..++ + ..|+.+|+...
T Consensus 209 ~a~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 209 KGDG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 8887 6667777766544332 1 24666665543
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.6e-14 Score=149.40 Aligned_cols=205 Identities=21% Similarity=0.313 Sum_probs=137.6
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC----------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---------- 221 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~---------- 221 (419)
.++..+.+|++|+|++.+++.+..++... ..+..+|||||||+|||++|+++|+.+.+
T Consensus 8 ~~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 34677889999999999999999998752 45678999999999999999999987643
Q ss_pred ---------------ceEEEeCcchhhhhhchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCCCHHH
Q 014743 222 ---------------TFIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 222 ---------------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
.++.+++... .| -..++++.+.+. ...+.||+|||+|.+. ...
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~ 137 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEA 137 (451)
T ss_pred cccHHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHH
Confidence 2333333211 11 123333333332 2456799999998862 334
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHH
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIA 361 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la 361 (419)
.+.|+..+.+ ..+++++|++|+.+..+.+.+.+ |+. .+.|++++.++....+...++..+.. ++..+..|+
T Consensus 138 ~n~LLk~lEe-----p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 138 FNSLLKTLEE-----PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred HHHHHHHhhc-----CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4555555543 34578888888988999999988 764 68999999999888888766654432 223466788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
..+.| +.+++.+++....... . ..++.+++..+
T Consensus 210 ~~s~g-dlr~a~~~Lekl~~~~---~-~~It~~~V~~l 242 (451)
T PRK06305 210 RAAQG-SLRDAESLYDYVVGLF---P-KSLDPDSVAKA 242 (451)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc---c-CCcCHHHHHHH
Confidence 88776 5555555555433221 1 23666655443
No 121
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=3.9e-14 Score=146.32 Aligned_cols=220 Identities=18% Similarity=0.286 Sum_probs=141.1
Q ss_pred CCCCCccccc-CcHH--HHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceEEE
Q 014743 155 VPDSTYDMIG-GLDQ--QIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRV 226 (419)
Q Consensus 155 ~p~~~~~~I~-G~~~--~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v 226 (419)
-|..+|++.+ |... +...+.++...| | ..+.++||||||||||+|++++++++ +..++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~----------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNP----------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCc----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3566787754 6433 233333333222 1 23569999999999999999999875 4578889
Q ss_pred eCcchhhhhhchhH-HHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEE
Q 014743 227 SGSELVQKYIGEGS-RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVL 305 (419)
Q Consensus 227 ~~s~l~~~~~g~~~-~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI 305 (419)
++.+++..+..... +.+.. |....+..+.+|+|||++.+.+. ...+..+..+++.+. ..+..+||
T Consensus 167 ~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~----------~~~q~elf~~~n~l~---~~~k~iIi 232 (440)
T PRK14088 167 TSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK----------TGVQTELFHTFNELH---DSGKQIVI 232 (440)
T ss_pred EHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc----------HHHHHHHHHHHHHHH---HcCCeEEE
Confidence 98888776644321 12222 33333346889999999987432 223444555555542 22334444
Q ss_pred EEeCCcch---hhHHhcCCCce--eEEEEcCCCCHHHHHHHHHHHHhhc--ccCCCCCHHHHHHHcCCCCHHHHHHHHHH
Q 014743 306 MATNRIDI---LDQALLRPGRI--DRKIEFPNPNEESRLDILKIHSRRM--NLMRGIDLKKIAEKMNGASGAELKAVCTE 378 (419)
Q Consensus 306 ~tTn~~~~---ld~allr~gRf--d~~I~~~~P~~~~r~~Il~~~~~~~--~~~~~~dl~~la~~t~G~sgadi~~l~~~ 378 (419)
.+.+.|.. +.+.+.+ || ...+.|++|+.+.|..|++...... .+.++ -+..||....| +.+.|..++.+
T Consensus 233 tsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~e-v~~~Ia~~~~~-~~R~L~g~l~~ 308 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIK 308 (440)
T ss_pred ECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHhcccc-CHHHHHHHHHH
Confidence 44466665 4556777 77 4578899999999999999887643 33333 36778887776 77788877776
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 379 AGMFALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 379 A~~~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
-...+.. ....+|.+....++..++.
T Consensus 309 l~~~~~~-~~~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 309 LLVYKET-TGEEVDLKEAILLLKDFIK 334 (440)
T ss_pred HHHHHHH-hCCCCCHHHHHHHHHHHhc
Confidence 5544433 3356888888888877654
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=3.1e-14 Score=148.79 Aligned_cols=193 Identities=21% Similarity=0.274 Sum_probs=138.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC----------
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---------- 221 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~---------- 221 (419)
.+++++.+|++|+|++.+++.|..++... ..|..+|||||+|+|||++|+++|+.+.+
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 45788899999999999999999998652 45677899999999999999999987632
Q ss_pred --------------ceEEEeCcchhhhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHH
Q 014743 222 --------------TFIRVSGSELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 222 --------------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
.++.++++.- .+-..++++.+.+... ...|++|||+|.+ ..+.+
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L------------t~~A~ 134 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML------------TKEAF 134 (535)
T ss_pred ccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC------------CHHHH
Confidence 1222222110 0123455655544322 2359999999885 34556
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~ 362 (419)
+.|+..|.+. ..++.+|++|+.+..+.+.+++ |. ..+.|.+++.++....+...+..-++. .+..+..|+.
T Consensus 135 NALLK~LEEp-----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 135 NALLKTLEEP-----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred HHHHHHHhhc-----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6666666553 4568888888989999999988 75 588999999998888887766654432 2234667888
Q ss_pred HcCCCCHHHHHHHHHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a 383 (419)
.+.| +.+++..++..+...+
T Consensus 207 ~s~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 207 SGNG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred HcCC-cHHHHHHHHHHHHHhc
Confidence 8777 8888888887766554
No 123
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=3.1e-14 Score=151.40 Aligned_cols=213 Identities=18% Similarity=0.214 Sum_probs=148.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEe---
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS--- 227 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~--- 227 (419)
...++.+.+|++|+|++.+++.|..++... +.+..+||+||+|+|||++|+++|+.+.|.....+
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 455788899999999999999999998763 45778999999999999999999998765422111
Q ss_pred ----------Ccchhhh-hh---------chhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHH
Q 014743 228 ----------GSELVQK-YI---------GEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 228 ----------~s~l~~~-~~---------g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
|..+... ++ ..+-..++++++.++.. .+.|++|||+|.+ .....
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L------------s~~a~ 149 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML------------STAAF 149 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC------------CHHHH
Confidence 0001100 00 01223567777776543 3579999999885 23445
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCC-CCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMR-GIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~-~~dl~~la~ 362 (419)
+.|+..|.+. ...+++|++|+.++.+.+.+++ |+ ..+.|..|+.++....+...+++-+..- +..+..|+.
T Consensus 150 naLLKtLEeP-----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 150 NALLKTLEEP-----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIAR 221 (598)
T ss_pred HHHHHHHHhC-----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6666666543 4568888888888888888887 76 4789999999999888887776554322 233566777
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
.+.| +.+++.+++..+.... ...||.+|+...+
T Consensus 222 ~a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~ll 254 (598)
T PRK09111 222 AAEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDML 254 (598)
T ss_pred HcCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHh
Confidence 7776 7778888776654332 2357777776554
No 124
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2.6e-14 Score=151.18 Aligned_cols=204 Identities=21% Similarity=0.291 Sum_probs=141.1
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc----------
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------- 222 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~---------- 222 (419)
.++.+.+|++|+|++.+++.|..++... ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 4677889999999999999999999753 456779999999999999999999977542
Q ss_pred --------------eEEEeCcchhhhhhchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCCCHHHHH
Q 014743 223 --------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 284 (419)
Q Consensus 223 --------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~ 284 (419)
++.+++.. ...-..++++.+.+. ...+.|++|||+|.+ .....+
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L------------s~~a~n 137 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML------------SNSAFN 137 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc------------CHHHHH
Confidence 22232211 011234555554433 234579999999885 223344
Q ss_pred HHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHH
Q 014743 285 TMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEK 363 (419)
Q Consensus 285 ~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~ 363 (419)
.|+..+.+ ....+++|++|+.+..+.+.+++ |+. .+.|.+++.++....++......++. ++..+..|+..
T Consensus 138 aLLK~LEe-----pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~ 209 (563)
T PRK06647 138 ALLKTIEE-----PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYK 209 (563)
T ss_pred HHHHhhcc-----CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44444432 35678888998889999999988 765 68899999999998888776554432 22336667877
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 364 MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 364 t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
+.| +.+++.+++..+...+ ...++.+++..+
T Consensus 210 s~G-dlR~alslLdklis~~----~~~It~e~V~~l 240 (563)
T PRK06647 210 STG-SVRDAYTLFDQVVSFS----DSDITLEQIRSK 240 (563)
T ss_pred cCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHH
Confidence 777 7778888776654332 234666655543
No 125
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.62 E-value=2e-14 Score=138.83 Aligned_cols=189 Identities=22% Similarity=0.311 Sum_probs=125.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc------hhhhhhchhHHHH-H--------------------HH
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE------LVQKYIGEGSRMV-R--------------------EL 246 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~------l~~~~~g~~~~~i-~--------------------~l 246 (419)
.+..+||+||||||||++|+++|..++.+++.++|+. ++..|.+.....+ . .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 4568999999999999999999999999999998753 3333333221111 1 12
Q ss_pred HHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc-----------ccCCCeEEEEEeCCcc---
Q 014743 247 FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF-----------EASNKIKVLMATNRID--- 312 (419)
Q Consensus 247 f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~-----------~~~~~v~VI~tTn~~~--- 312 (419)
+. |.. .+.+|+||||+. .++++++.|+++|++..-. ....+..||+|+|...
T Consensus 100 ~~-A~~-~g~~lllDEi~r------------~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 100 TL-AVR-EGFTLVYDEFTR------------SKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HH-HHH-cCCEEEEcchhh------------CCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 22 222 346999999998 5678889999988753210 0123677999999763
Q ss_pred --hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHH---HHHHHc------CCCCHHHHHHHHHHHHH
Q 014743 313 --ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLK---KIAEKM------NGASGAELKAVCTEAGM 381 (419)
Q Consensus 313 --~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~---~la~~t------~G~sgadi~~l~~~A~~ 381 (419)
.+++++++ || ..+.++.|+.++..+|+..+.. .... ... .++..+ ...+.+..-.+++.+..
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~-~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~ 238 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAED-SAATIVRLVREFRASGDEITSGLRASLMIAEVATQ 238 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHH-HHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHH
Confidence 56889998 98 5789999999999999987642 1111 111 111111 13334444444444333
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhh
Q 014743 382 FALRERRIHVTQEDFEMAVAKVMKK 406 (419)
Q Consensus 382 ~a~~~~~~~vt~eD~~~Al~~v~~~ 406 (419)
...+..++.+||...+..|+..
T Consensus 239 ---~~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 239 ---QDIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred ---cCCCCCCCcHHHHHHHHHHhcc
Confidence 3457889999999999988753
No 126
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=5.6e-14 Score=148.03 Aligned_cols=192 Identities=21% Similarity=0.304 Sum_probs=133.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 270 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r 270 (419)
+.++|||++|||||+|++++++++ +..++++++.+|+..+...........|.. +-..+++|+||||+.+.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l~gk- 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRR-RYREMDILLVDDIQFLEDK- 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHH-HhhcCCEEEEehhccccCC-
Confidence 448999999999999999999975 467899999998887765433322233432 2335789999999997532
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc----chhhHHhcCCCce--eEEEEcCCCCHHHHHHHHHH
Q 014743 271 MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI----DILDQALLRPGRI--DRKIEFPNPNEESRLDILKI 344 (419)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~----~~ld~allr~gRf--d~~I~~~~P~~~~r~~Il~~ 344 (419)
...+..|+.+++.+. ..+.-||+|||.+ ..+++.|.+ || ...+.+..|+.+.|.+||+.
T Consensus 393 ---------e~tqeeLF~l~N~l~----e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 393 ---------ESTQEEFFHTFNTLH----NANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred ---------HHHHHHHHHHHHHHH----hcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHH
Confidence 234556667776653 2233355677764 356788888 88 55778999999999999998
Q ss_pred HHhhcccCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 014743 345 HSRRMNLMR-GIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 406 (419)
Q Consensus 345 ~~~~~~~~~-~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~ 406 (419)
......+.- +.-+..|+.+..+ +.+.|..++.+-...+.. ....+|.+....+++.++..
T Consensus 458 ka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~-~~~~itl~la~~vL~~~~~~ 518 (617)
T PRK14086 458 KAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASL-NRQPVDLGLTEIVLRDLIPE 518 (617)
T ss_pred HHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHhhcc
Confidence 877654432 2225667777665 678888877765555543 33557878877777776553
No 127
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.61 E-value=9.4e-14 Score=131.05 Aligned_cols=202 Identities=16% Similarity=0.228 Sum_probs=133.4
Q ss_pred CCCCCccccc--CcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCc
Q 014743 155 VPDSTYDMIG--GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS 229 (419)
Q Consensus 155 ~p~~~~~~I~--G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s 229 (419)
.++.+|+++. +.+.++..+++++. +...+..++|+||+|||||+||++++++. +..++.+++.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 3445667744 44566676666554 22456789999999999999999999864 6678888887
Q ss_pred chhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 230 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 230 ~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
++... + .....+.+|+|||+|.+. ...+..+..+++... ..+..++|++++
T Consensus 80 ~~~~~------------~--~~~~~~~~liiDdi~~l~------------~~~~~~L~~~~~~~~---~~~~~~vl~~~~ 130 (227)
T PRK08903 80 SPLLA------------F--DFDPEAELYAVDDVERLD------------DAQQIALFNLFNRVR---AHGQGALLVAGP 130 (227)
T ss_pred HhHHH------------H--hhcccCCEEEEeChhhcC------------chHHHHHHHHHHHHH---HcCCcEEEEeCC
Confidence 65322 1 112346799999999852 223455666666543 233444555555
Q ss_pred Ccc---hhhHHhcCCCce--eEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 014743 310 RID---ILDQALLRPGRI--DRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 310 ~~~---~ld~allr~gRf--d~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a 383 (419)
.+. .+.+.+.+ || ...+.+++|+.+++..++........+. ++--+..|+...+| +.+++..+++.-...|
T Consensus 131 ~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 131 AAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 432 24466666 76 5799999999998988888765544332 22235667776665 7888888888755445
Q ss_pred HHhcCCCCCHHHHHHHHH
Q 014743 384 LRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 384 ~~~~~~~vt~eD~~~Al~ 401 (419)
.. ....||...+..++.
T Consensus 208 ~~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 LE-QKRPVTLPLLREMLA 224 (227)
T ss_pred HH-hCCCCCHHHHHHHHh
Confidence 33 446888888877764
No 128
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=1.2e-13 Score=142.64 Aligned_cols=192 Identities=15% Similarity=0.258 Sum_probs=126.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccC
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARME 272 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~ 272 (419)
+.++||||+|+|||+|++++++++ +..++++++.++...+.......-.+.|.... ..+.||+|||++.+.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k--- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK--- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC---
Confidence 579999999999999999999865 57788888877766554332211112333322 35779999999997432
Q ss_pred CCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC-cc---hhhHHhcCCCcee--EEEEcCCCCHHHHHHHHHHHH
Q 014743 273 SGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR-ID---ILDQALLRPGRID--RKIEFPNPNEESRLDILKIHS 346 (419)
Q Consensus 273 ~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~-~~---~ld~allr~gRfd--~~I~~~~P~~~~r~~Il~~~~ 346 (419)
...+..+..+++.+. ..+ ..+|+||+. |. .+++.+.+ ||. ..+.+++|+.++|..|++...
T Consensus 218 -------~~~qeelf~l~N~l~---~~~-k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 218 -------GATQEEFFHTFNSLH---TEG-KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred -------hhhHHHHHHHHHHHH---HCC-CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 233455556665442 122 345666654 54 45688888 884 788999999999999999887
Q ss_pred hhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHh-cCCCCCHHHHHHHHHHHHh
Q 014743 347 RRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGM-FALRE-RRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 347 ~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~-~a~~~-~~~~vt~eD~~~Al~~v~~ 405 (419)
...++. ++.-+..|+....+ +.+.|...+...+. .|... ....++.++...++..++.
T Consensus 285 ~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 285 EALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 765432 22224556776665 45566655554431 12211 3356899999999988754
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.60 E-value=9.5e-14 Score=148.79 Aligned_cols=219 Identities=22% Similarity=0.333 Sum_probs=140.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCceE
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFI 224 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~i 224 (419)
..+.+|++|+|++..++.+...+.. ..+.+++|+|||||||||+|+++++.. +.+|+
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 4566789999999999988777644 245679999999999999999998644 45789
Q ss_pred EEeCcchh-------hhhhchhHHH----HHHHHHH----------HHhhCCceEEecccccccccccCCCCCCCCHHHH
Q 014743 225 RVSGSELV-------QKYIGEGSRM----VRELFVM----------AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 225 ~v~~s~l~-------~~~~g~~~~~----i~~lf~~----------a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
.++|..+- ..++|..... .+..+.. .......+|||||++. .+...+
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~------------Ld~~~Q 282 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGE------------LDPLLQ 282 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEecccc------------CCHHHH
Confidence 99987652 1122211100 0111110 1122346999999887 456677
Q ss_pred HHHHHHHHHccc------c---------------c--cCCCeEEEE-EeCCcchhhHHhcCCCceeEEEEcCCCCHHHHH
Q 014743 284 RTMLELLNQLDG------F---------------E--ASNKIKVLM-ATNRIDILDQALLRPGRIDRKIEFPNPNEESRL 339 (419)
Q Consensus 284 ~~l~~lL~~l~~------~---------------~--~~~~v~VI~-tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~ 339 (419)
..+..++....- + + ...++++|+ ||+.++.++++|++ ||. .++|++++.+++.
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 778887765210 0 0 112355555 45668889999988 887 5789999999999
Q ss_pred HHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHH
Q 014743 340 DILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE--------RRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 340 ~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~--------~~~~vt~eD~~~Al~~v 403 (419)
.|++..+...... .+.-+..|+..+. .|+...+++..+...+..+ ....|+.+|++.++..-
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 9999988765431 1222344555433 4444444444443333211 23479999999998754
No 130
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=6.3e-14 Score=149.29 Aligned_cols=215 Identities=16% Similarity=0.243 Sum_probs=139.6
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEE-------
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR------- 225 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~------- 225 (419)
.++++.+|++|+|++.+++.|+.++... .-+.++||+||+|||||++|+++|+.+.+.--.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 4678889999999999999999988653 456779999999999999999999987662100
Q ss_pred ---EeCc------chh-------hhhhch---hHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHH
Q 014743 226 ---VSGS------ELV-------QKYIGE---GSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 226 ---v~~s------~l~-------~~~~g~---~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
-.|. .+. ..+-|. +...++++.+.+.. ....|++|||+|.+. ...
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------~~a 143 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------TAA 143 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------HHH
Confidence 0000 000 001111 12345555555532 335699999998862 233
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHH
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIA 361 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la 361 (419)
.+.|+..|.+. ...+++|++|+.+..+.+.+.+ |. ..+.|.+++.++....+...++..+. .++..+..|+
T Consensus 144 ~naLLK~LEeP-----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 144 FNAFLKTLEEP-----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HHHHHHHHhCC-----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45555555543 3467777788888888888887 55 47899999999888777766654432 2333467788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALR-ERRIHVTQEDFEMAV 400 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~-~~~~~vt~eD~~~Al 400 (419)
..+.| +.+++.+.+.....++.. .....|+.+|+...+
T Consensus 216 ~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 216 RKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 88876 555666655544433310 123456766665543
No 131
>PRK08727 hypothetical protein; Validated
Probab=99.60 E-value=1.7e-13 Score=130.15 Aligned_cols=206 Identities=19% Similarity=0.246 Sum_probs=128.9
Q ss_pred CCCCCcccc-cCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcc
Q 014743 155 VPDSTYDMI-GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE 230 (419)
Q Consensus 155 ~p~~~~~~I-~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~ 230 (419)
.+..+|++. +|..+....+..... | .....++|+||+|||||+|+.++++++ +...++++..+
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~------------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAA------------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHh------------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 445567664 455555554443221 1 233569999999999999999998764 44555665544
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC-
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN- 309 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn- 309 (419)
+... +...++.. ..+.+|+|||++.+... ......+..+++... ..+..||+|+|
T Consensus 80 ~~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~----------~~~~~~lf~l~n~~~----~~~~~vI~ts~~ 135 (233)
T PRK08727 80 AAGR--------LRDALEAL--EGRSLVALDGLESIAGQ----------REDEVALFDFHNRAR----AAGITLLYTARQ 135 (233)
T ss_pred hhhh--------HHHHHHHH--hcCCEEEEeCcccccCC----------hHHHHHHHHHHHHHH----HcCCeEEEECCC
Confidence 3322 22333322 35579999999987432 233455666666552 22444666666
Q ss_pred Ccchh---hHHhcCCCce--eEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 014743 310 RIDIL---DQALLRPGRI--DRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 310 ~~~~l---d~allr~gRf--d~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a 383 (419)
.|..+ ++.+.+ || ...+.|++|+.+++..|++.+.....+. ++..+..|+..+.| +.+.+.+++......+
T Consensus 136 ~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~ 212 (233)
T PRK08727 136 MPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRES 212 (233)
T ss_pred ChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 45544 688888 87 5678999999999999999766543331 22336678888775 4444545566554434
Q ss_pred HHhcCCCCCHHHHHHHHH
Q 014743 384 LRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 384 ~~~~~~~vt~eD~~~Al~ 401 (419)
...+ ..+|.+.+...+.
T Consensus 213 ~~~~-~~it~~~~~~~l~ 229 (233)
T PRK08727 213 LAAK-RRVTVPFLRRVLE 229 (233)
T ss_pred HHhC-CCCCHHHHHHHHh
Confidence 4333 4788888887764
No 132
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.59 E-value=7e-14 Score=131.49 Aligned_cols=196 Identities=21% Similarity=0.309 Sum_probs=136.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeC
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 228 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~ 228 (419)
+..+.++.++++.|.+.+++.|.+.....+.. .|.+++||+|++|||||+++|++..++ +..+|.|..
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 34556778899999999999999988765433 578999999999999999999999865 566777766
Q ss_pred cchhhhhhchhHHHHHHHHHHHHhh-CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEE
Q 014743 229 SELVQKYIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 307 (419)
Q Consensus 229 s~l~~~~~g~~~~~i~~lf~~a~~~-~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~t 307 (419)
.++.. +-.+++..+.. .+-|||+|++-- . ......+.|..+|+.. .-....||+|.+|
T Consensus 89 ~~L~~---------l~~l~~~l~~~~~kFIlf~DDLsF----------e-~~d~~yk~LKs~LeGg-le~~P~NvliyAT 147 (249)
T PF05673_consen 89 EDLGD---------LPELLDLLRDRPYKFILFCDDLSF----------E-EGDTEYKALKSVLEGG-LEARPDNVLIYAT 147 (249)
T ss_pred HHhcc---------HHHHHHHHhcCCCCEEEEecCCCC----------C-CCcHHHHHHHHHhcCc-cccCCCcEEEEEe
Confidence 55432 44566665543 356999998532 1 2223346666666532 1234579999999
Q ss_pred eCCcchhhHHhc---------------------CCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCC-CCHH----HHH
Q 014743 308 TNRIDILDQALL---------------------RPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLK----KIA 361 (419)
Q Consensus 308 Tn~~~~ld~all---------------------r~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~-~dl~----~la 361 (419)
||+-..++..+. =..||.-.|.|.+|+.++-.+|++.++...++.-+ .++. ..|
T Consensus 148 SNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa 227 (249)
T PF05673_consen 148 SNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWA 227 (249)
T ss_pred cchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 998654433211 11299999999999999999999999987665432 1221 234
Q ss_pred HHcCCCCHHHHHHHHH
Q 014743 362 EKMNGASGAELKAVCT 377 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~ 377 (419)
..-.|.||+--...+.
T Consensus 228 ~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 228 LRRGGRSGRTARQFID 243 (249)
T ss_pred HHcCCCCHHHHHHHHH
Confidence 4455777776665553
No 133
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.58 E-value=2.3e-13 Score=129.45 Aligned_cols=206 Identities=15% Similarity=0.179 Sum_probs=131.8
Q ss_pred CCCCCccccc--CcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC---CceEEEeCc
Q 014743 155 VPDSTYDMIG--GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGS 229 (419)
Q Consensus 155 ~p~~~~~~I~--G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~---~~~i~v~~s 229 (419)
.++.+|++.+ +...++..+...... ..+..++||||||||||+|+++++++.. ..+.++...
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 3455666644 456677777766543 2345799999999999999999998653 334555444
Q ss_pred chhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 230 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 230 ~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
..... ..++++.... ..+|+|||++.+. .+...+..+..+++.+. ..++..+|+||+
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~----------~~~~~~~~lf~l~n~~~---e~g~~~li~ts~ 139 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIA----------GDELWEMAIFDLYNRIL---ESGRTRLLITGD 139 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhc----------CCHHHHHHHHHHHHHHH---HcCCCeEEEeCC
Confidence 32211 1122222222 3689999999873 23445556666666542 233444555555
Q ss_pred -Ccch---hhHHhcCCCcee--EEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 014743 310 -RIDI---LDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMF 382 (419)
Q Consensus 310 -~~~~---ld~allr~gRfd--~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~ 382 (419)
.|.. +.|.|.+ |+. .++.+++|+.+++.+|++......++. ++.-+..|+.+.+| +.+.+..++......
T Consensus 140 ~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~ 216 (235)
T PRK08084 140 RPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRA 216 (235)
T ss_pred CChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 4444 5789988 885 789999999999999998755543321 22236678888887 777888888775433
Q ss_pred HHHhcCCCCCHHHHHHHH
Q 014743 383 ALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 383 a~~~~~~~vt~eD~~~Al 400 (419)
++. ....||.+.+..++
T Consensus 217 ~l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 217 SIT-AQRKLTIPFVKEIL 233 (235)
T ss_pred HHh-cCCCCCHHHHHHHH
Confidence 433 34558888777765
No 134
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=9.9e-14 Score=148.20 Aligned_cols=204 Identities=17% Similarity=0.248 Sum_probs=138.2
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCce---------
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF--------- 223 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~--------- 223 (419)
+++.+.+|++|+|++.+++.|..++... ..+..+||+||+|+|||++|+++|+.+.+..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 5788899999999999999999988752 3456789999999999999999998765421
Q ss_pred ----------------EEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHH
Q 014743 224 ----------------IRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 224 ----------------i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
+.++.+. ...-..++++.+.+.. ..+.||||||+|.+. ....
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~ 137 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAF 137 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHH
Confidence 2222210 1112334555554433 235699999999852 2334
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHH
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAE 362 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~ 362 (419)
+.|+..|.+. ..++++|++|+..+.+.+.+.+ |+. .+.|+.++..+...++.......++. ++..+..|+.
T Consensus 138 naLLk~LEep-----p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~ 209 (585)
T PRK14950 138 NALLKTLEEP-----PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIAR 209 (585)
T ss_pred HHHHHHHhcC-----CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4555554432 3567888888888888888877 654 68899999999888888776654432 2223667787
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
.+.| +.+++.+.+.....+ ....++.+++...
T Consensus 210 ~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 210 AATG-SMRDAENLLQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHH
Confidence 7777 777777766653322 2335777776543
No 135
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.56 E-value=4.3e-14 Score=140.45 Aligned_cols=221 Identities=18% Similarity=0.286 Sum_probs=140.1
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-------CC--ceEEE
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DC--TFIRV 226 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-------~~--~~i~v 226 (419)
.+..|.+|+|++++++.+.-+...+ ...++||+||||||||++||+++.-+ ++ ++.++
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 4567899999999999887654332 23689999999999999999999876 22 22222
Q ss_pred eCc---------chhhh-------hhchhHH-HHH-HHHHHH-------------HhhCCceEEecccccccccccCCCC
Q 014743 227 SGS---------ELVQK-------YIGEGSR-MVR-ELFVMA-------------REHAPSIIFMDEIDSIGSARMESGS 275 (419)
Q Consensus 227 ~~s---------~l~~~-------~~g~~~~-~i~-~lf~~a-------------~~~~psVl~iDEiD~l~~~r~~~~~ 275 (419)
.+. .+... -.+.++. .+. ..++.+ ......+||+||++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInr---------- 139 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNL---------- 139 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHh----------
Confidence 211 01000 0000000 000 000111 011224999999998
Q ss_pred CCCCHHHHHHHHHHHHHcc------cc--ccCCCeEEEEEeCCcc-hhhHHhcCCCceeEEEEcCCCCH-HHHHHHHHHH
Q 014743 276 GNGDSEVQRTMLELLNQLD------GF--EASNKIKVLMATNRID-ILDQALLRPGRIDRKIEFPNPNE-ESRLDILKIH 345 (419)
Q Consensus 276 ~~~~~~~~~~l~~lL~~l~------~~--~~~~~v~VI~tTn~~~-~ld~allr~gRfd~~I~~~~P~~-~~r~~Il~~~ 345 (419)
.++..+..+.+.+++.. |. .....+++|+|+|..+ .++++++. ||...+.+++|.. ++|.+|++..
T Consensus 140 --l~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 140 --LEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred --CCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 45678888888887542 11 1224678888888644 68999999 9999999998876 8999999864
Q ss_pred Hhhc----cc---------------------CCCCC--------HHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcCCC
Q 014743 346 SRRM----NL---------------------MRGID--------LKKIAEKMN--GASGAELKAVCTEAGMFALRERRIH 390 (419)
Q Consensus 346 ~~~~----~~---------------------~~~~d--------l~~la~~t~--G~sgadi~~l~~~A~~~a~~~~~~~ 390 (419)
...- .+ ...+- +..++..+. | .-++|. +++.|...|+.+++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s-~Ra~i~-l~~aA~a~A~l~Gr~~ 293 (334)
T PRK13407 216 DAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDG-LRGELT-LLRAARALAAFEGAEA 293 (334)
T ss_pred hcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCC-chHHHH-HHHHHHHHHHHcCCCe
Confidence 3210 00 00010 112333333 3 235555 8888889999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 014743 391 VTQEDFEMAVAKVMK 405 (419)
Q Consensus 391 vt~eD~~~Al~~v~~ 405 (419)
|+.+|+..+..-++.
T Consensus 294 V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 294 VGRSHLRSVATMALS 308 (334)
T ss_pred eCHHHHHHHHHHhhh
Confidence 999999988877665
No 136
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.56 E-value=6.7e-14 Score=136.38 Aligned_cols=209 Identities=26% Similarity=0.395 Sum_probs=142.2
Q ss_pred cccCCCCCcccccCcHHHHHH---HHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc---eEE
Q 014743 152 VEKVPDSTYDMIGGLDQQIKE---IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---FIR 225 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~---l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~---~i~ 225 (419)
.+...+.+++|.+||++.+.+ |+.+|+. ..-.+++|+||||||||+|||.|+.....+ |+.
T Consensus 129 aermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfve 195 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVE 195 (554)
T ss_pred hhhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEE
Confidence 345667788999999887654 3344433 345679999999999999999999877655 666
Q ss_pred EeCcchhhhhhchhHHHHHHHHHHHHh-----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCC
Q 014743 226 VSGSELVQKYIGEGSRMVRELFVMARE-----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 300 (419)
Q Consensus 226 v~~s~l~~~~~g~~~~~i~~lf~~a~~-----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~ 300 (419)
++... ..-.-+|.+|+.+.. ....|||||||+.+-.. -+.+++-.+ ..+
T Consensus 196 lSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks------------QQD~fLP~V-------E~G 249 (554)
T KOG2028|consen 196 LSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS------------QQDTFLPHV-------ENG 249 (554)
T ss_pred Eeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh------------hhhccccee-------ccC
Confidence 65432 233457888888864 33579999999997322 123333333 245
Q ss_pred CeEEEEEeC-Cc-chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhc--------ccCC------CCCHHHHHHHc
Q 014743 301 KIKVLMATN-RI-DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM--------NLMR------GIDLKKIAEKM 364 (419)
Q Consensus 301 ~v~VI~tTn-~~-~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~--------~~~~------~~dl~~la~~t 364 (419)
.+++|++|. .| -.+..+|++ |+ +++.+..........||..-..-+ ++.. +--++.|+..+
T Consensus 250 ~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls 326 (554)
T KOG2028|consen 250 DITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS 326 (554)
T ss_pred ceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc
Confidence 677887663 34 478889998 65 467888888888888887643311 1111 11256789999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHH
Q 014743 365 NGASGAELKAVCTEAGMFALRER---RIHVTQEDFEMAVAK 402 (419)
Q Consensus 365 ~G~sgadi~~l~~~A~~~a~~~~---~~~vt~eD~~~Al~~ 402 (419)
+|-.-+-|..|--.+.+.+.|.+ +..++.+|+.+++..
T Consensus 327 dGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 327 DGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 99777777766555556666554 467899999988865
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=5.6e-13 Score=142.58 Aligned_cols=194 Identities=18% Similarity=0.256 Sum_probs=132.1
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEE----Ee
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR----VS 227 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~----v~ 227 (419)
.+++++.+|++|+|++.+++.|..++... +.+.++||+||+|+|||++|+++|+.+.+.... -.
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 45778899999999999999999998752 235679999999999999999999987652110 00
Q ss_pred Cc--------------chh--hhhhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHHHHHH
Q 014743 228 GS--------------ELV--QKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTML 287 (419)
Q Consensus 228 ~s--------------~l~--~~~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~ 287 (419)
|. ++. ....+..-..++++++.+... ...|++|||+|.+ ..+..+.|+
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L------------t~~a~naLL 142 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML------------STAAFNALL 142 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc------------CHHHHHHHH
Confidence 00 000 111122345677887776532 3569999999985 234455555
Q ss_pred HHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCC
Q 014743 288 ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNG 366 (419)
Q Consensus 288 ~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G 366 (419)
..|.+ ....+++|++|++++.+.+.+++ |+ ..+.|+.++.++....+.....+.+.. ....+..++..+.|
T Consensus 143 K~LEe-----Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 143 KTLEE-----PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHhc-----CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 55543 34578888889989989899887 76 468899998888777776655543322 12236677777777
Q ss_pred CCHHHHHHHHHH
Q 014743 367 ASGAELKAVCTE 378 (419)
Q Consensus 367 ~sgadi~~l~~~ 378 (419)
+.+++..+++.
T Consensus 215 -~lr~A~~lLek 225 (620)
T PRK14948 215 -GLRDAESLLDQ 225 (620)
T ss_pred -CHHHHHHHHHH
Confidence 44566555554
No 138
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.54 E-value=1.2e-13 Score=118.54 Aligned_cols=142 Identities=39% Similarity=0.638 Sum_probs=99.0
Q ss_pred cCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhchhH
Q 014743 164 GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEGS 240 (419)
Q Consensus 164 ~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~~~ 240 (419)
.|.+.++..+...+.. ..+.+++++||||||||++++.++..+ +.+++.+++++..........
T Consensus 1 ~~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 1 VGQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred CchHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH
Confidence 3667777777777654 256789999999999999999999987 888999998877655433322
Q ss_pred HH---HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc-ccCCCeEEEEEeCCcc--hh
Q 014743 241 RM---VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF-EASNKIKVLMATNRID--IL 314 (419)
Q Consensus 241 ~~---i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~-~~~~~v~VI~tTn~~~--~l 314 (419)
.. ....+..+....+.+|++||++.+ .......+.+++...... ....++.+|++||... .+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lilDe~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~ 135 (151)
T cd00009 68 FGHFLVRLLFELAEKAKPGVLFIDEIDSL------------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDL 135 (151)
T ss_pred hhhhhHhHHHHhhccCCCeEEEEeChhhh------------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCc
Confidence 11 122233445567899999999884 123334455555544211 0135788999999877 67
Q ss_pred hHHhcCCCceeEEEEcCC
Q 014743 315 DQALLRPGRIDRKIEFPN 332 (419)
Q Consensus 315 d~allr~gRfd~~I~~~~ 332 (419)
++.+.+ ||+..+.+++
T Consensus 136 ~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 136 DRALYD--RLDIRIVIPL 151 (151)
T ss_pred ChhHHh--hhccEeecCC
Confidence 788877 9998888763
No 139
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=6.6e-13 Score=137.49 Aligned_cols=190 Identities=14% Similarity=0.285 Sum_probs=134.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEeCcchhhhhhchhHH---HHHHHHHHHHhhCCceEEeccccccc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQKYIGEGSR---MVRELFVMAREHAPSIIFMDEIDSIG 267 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~~s~l~~~~~g~~~~---~i~~lf~~a~~~~psVl~iDEiD~l~ 267 (419)
+.++||||+|+|||+|++++++++ +..++++++.++...+...... .+..+... ...+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEecccccc
Confidence 568999999999999999999854 4678899998888776554322 22222222 2356799999999874
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc-ch---hhHHhcCCCcee--EEEEcCCCCHHHHHHH
Q 014743 268 SARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI-DI---LDQALLRPGRID--RKIEFPNPNEESRLDI 341 (419)
Q Consensus 268 ~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~-~~---ld~allr~gRfd--~~I~~~~P~~~~r~~I 341 (419)
+ ....+..+..+++.+. ..++ .+|+|++.+ .. +++.+.+ ||. -.+.+.+|+.++|.+|
T Consensus 220 ~----------k~~~~e~lf~l~N~~~---~~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 220 Y----------KEKTNEIFFTIFNNFI---ENDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred C----------CHHHHHHHHHHHHHHH---HcCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 2 2345666777777653 1222 466777654 33 4577777 884 5778999999999999
Q ss_pred HHHHHhhccc---CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHH
Q 014743 342 LKIHSRRMNL---MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER-RIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 342 l~~~~~~~~~---~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~-~~~vt~eD~~~Al~~v~ 404 (419)
++..+...++ .++.-+..|+....| +++.+..+|.+....+.... ...+|.+.+..++..+.
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc
Confidence 9988876442 222235667888777 88999999988876665542 35789999999988764
No 140
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.54 E-value=1.4e-13 Score=137.12 Aligned_cols=220 Identities=18% Similarity=0.264 Sum_probs=142.8
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-------CCceE-------
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFI------- 224 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-------~~~~i------- 224 (419)
.|..|+|+++++..+.-.+..| ...+++|.||||+|||++++++++.+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4688999999999887666553 35689999999999999999999755 22111
Q ss_pred --EEeCcc----------------hhh--------hhhchhHHHHHHHH-------H--HHHhhCCceEEeccccccccc
Q 014743 225 --RVSGSE----------------LVQ--------KYIGEGSRMVRELF-------V--MAREHAPSIIFMDEIDSIGSA 269 (419)
Q Consensus 225 --~v~~s~----------------l~~--------~~~g~~~~~i~~lf-------~--~a~~~~psVl~iDEiD~l~~~ 269 (419)
..+|.. +.. ..+|.. .+...+ . ........+||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L--- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLL--- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhC---
Confidence 000000 000 111110 000100 0 000122469999999984
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHcc------cc--ccCCCeEEEEEeCCcc-hhhHHhcCCCceeEEEEcCCCCH-HHHH
Q 014743 270 RMESGSGNGDSEVQRTMLELLNQLD------GF--EASNKIKVLMATNRID-ILDQALLRPGRIDRKIEFPNPNE-ESRL 339 (419)
Q Consensus 270 r~~~~~~~~~~~~~~~l~~lL~~l~------~~--~~~~~v~VI~tTn~~~-~ld~allr~gRfd~~I~~~~P~~-~~r~ 339 (419)
.+..+..|++.|++.. |. ....++++|+|+|..+ .++++++. ||.-.+.++.|+. ++|.
T Consensus 144 ---------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 144 ---------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 5678888888887531 11 1123577777777544 68999999 9999999999975 8888
Q ss_pred HHHHHHHhhc----c---------------------cCCCCC--------HHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 014743 340 DILKIHSRRM----N---------------------LMRGID--------LKKIAEKMNGASGAELKAVCTEAGMFALRE 386 (419)
Q Consensus 340 ~Il~~~~~~~----~---------------------~~~~~d--------l~~la~~t~G~sgadi~~l~~~A~~~a~~~ 386 (419)
+|++...... . ...++. +..++..+..-+.+--..+++.|...|+.+
T Consensus 213 eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 213 EIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred HHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 9987632210 0 001111 223444555445566667888888899999
Q ss_pred cCCCCCHHHHHHHHHHHHhhh
Q 014743 387 RRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 387 ~~~~vt~eD~~~Al~~v~~~~ 407 (419)
++..|+.+|+..+..-++...
T Consensus 293 GR~~V~~dDv~~~a~~vL~HR 313 (337)
T TIGR02030 293 GRTEVTVDDIRRVAVLALRHR 313 (337)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999888644
No 141
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.54 E-value=2.6e-14 Score=129.35 Aligned_cols=113 Identities=28% Similarity=0.380 Sum_probs=74.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCC----ceEEEeCcchhhhhhchhHHHHHHHHHH----HHhhCCceEEeccccc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDC----TFIRVSGSELVQKYIGEGSRMVRELFVM----AREHAPSIIFMDEIDS 265 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~----~~i~v~~s~l~~~~~g~~~~~i~~lf~~----a~~~~psVl~iDEiD~ 265 (419)
|-..+||+||+|||||.+|++||..+.. ++++++|+++... ++....+..++.. .......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3456899999999999999999999885 9999999998761 1111112222211 1122234999999999
Q ss_pred ccccccCCCCCCCC---HHHHHHHHHHHHHcccccc------CCCeEEEEEeCCcc
Q 014743 266 IGSARMESGSGNGD---SEVQRTMLELLNQLDGFEA------SNKIKVLMATNRID 312 (419)
Q Consensus 266 l~~~r~~~~~~~~~---~~~~~~l~~lL~~l~~~~~------~~~v~VI~tTn~~~ 312 (419)
..+..+ .+.+ ..+++.|+++++...-.+. .+++++|+|||-..
T Consensus 80 a~~~~~----~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNS----GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTT----TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccc----ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 544310 0111 2788889999987543222 24899999999765
No 142
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.54 E-value=3.6e-13 Score=134.21 Aligned_cols=225 Identities=17% Similarity=0.216 Sum_probs=146.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC-------CceEEEe
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVS 227 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~-------~~~i~v~ 227 (419)
.+...|.+|+||++++..|.-.+..| ...++||.||+|||||+++|+++..+. ++|. .+
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~ 76 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SH 76 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CC
Confidence 45567899999999999999888775 346899999999999999999987542 2222 00
Q ss_pred C-------cchhhhh-------------------hchhHHH------HHHHHHHHH---------hhCCceEEecccccc
Q 014743 228 G-------SELVQKY-------------------IGEGSRM------VRELFVMAR---------EHAPSIIFMDEIDSI 266 (419)
Q Consensus 228 ~-------s~l~~~~-------------------~g~~~~~------i~~lf~~a~---------~~~psVl~iDEiD~l 266 (419)
. ++..... .|.++.. +...|.... .....+||+|||+.
T Consensus 77 p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInr- 155 (350)
T CHL00081 77 PSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNL- 155 (350)
T ss_pred CCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHh-
Confidence 0 0000000 0111111 111111111 11235999999998
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHcc------ccc--cCCCeEEEEEeCCcc-hhhHHhcCCCceeEEEEcCCCC-HH
Q 014743 267 GSARMESGSGNGDSEVQRTMLELLNQLD------GFE--ASNKIKVLMATNRID-ILDQALLRPGRIDRKIEFPNPN-EE 336 (419)
Q Consensus 267 ~~~r~~~~~~~~~~~~~~~l~~lL~~l~------~~~--~~~~v~VI~tTn~~~-~ld~allr~gRfd~~I~~~~P~-~~ 336 (419)
.++..+..|++.+++.. |.. ...++++|+|.|..+ .++++++. ||.-.+.+..|+ .+
T Consensus 156 -----------L~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 156 -----------LDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred -----------CCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 45678888888886521 111 223677777777554 68999999 999999999997 69
Q ss_pred HHHHHHHHHHhhc--cc-----------------------CCCCC--------HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 014743 337 SRLDILKIHSRRM--NL-----------------------MRGID--------LKKIAEKMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 337 ~r~~Il~~~~~~~--~~-----------------------~~~~d--------l~~la~~t~G~sgadi~~l~~~A~~~a 383 (419)
.+.+|++...... .. ...+- +..++..+.--+++--..+++.|...|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 9999997643210 00 01111 223444444445655557778888888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhhh
Q 014743 384 LRERRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 384 ~~~~~~~vt~eD~~~Al~~v~~~~ 407 (419)
+-+++..|+.+|+..+..-++...
T Consensus 303 al~GR~~V~pdDv~~~a~~vL~HR 326 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLCLRHR 326 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHh
Confidence 889999999999999999988644
No 143
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=5.5e-13 Score=142.65 Aligned_cols=192 Identities=19% Similarity=0.274 Sum_probs=135.8
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc--------
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 222 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-------- 222 (419)
+.+++.+.+|++|+|++.+++.|..++... ..+..+|||||+|+|||++|+++|..+.|.
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA 74 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 345778899999999999999999998752 456779999999999999999999976532
Q ss_pred -----------------eEEEeCcchhhhhhchhHHHHHHHHHHHHhhC----CceEEecccccccccccCCCCCCCCHH
Q 014743 223 -----------------FIRVSGSELVQKYIGEGSRMVRELFVMAREHA----PSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 223 -----------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~----psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
++.+++... .....++.+.+.+...+ +.|++|||+|.+ ...
T Consensus 75 Cg~C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L------------s~~ 136 (614)
T PRK14971 75 CNECESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML------------SQA 136 (614)
T ss_pred CCcchHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccC------------CHH
Confidence 222322210 11234666666654332 469999999885 234
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCC-CCHHHH
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLKKI 360 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~-~dl~~l 360 (419)
.++.|+..|.+. ..++++|++|+....+-+.+++ |+ ..+.|.+++.++....+...+...++.-+ ..+..|
T Consensus 137 a~naLLK~LEep-----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~L 208 (614)
T PRK14971 137 AFNAFLKTLEEP-----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVI 208 (614)
T ss_pred HHHHHHHHHhCC-----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 456666666543 3567788888888888899988 65 46999999999988888877665554322 236778
Q ss_pred HHHcCCCCHHHHHHHHHHHHH
Q 014743 361 AEKMNGASGAELKAVCTEAGM 381 (419)
Q Consensus 361 a~~t~G~sgadi~~l~~~A~~ 381 (419)
+..+.| +.+++.+++.....
T Consensus 209 a~~s~g-dlr~al~~Lekl~~ 228 (614)
T PRK14971 209 AQKADG-GMRDALSIFDQVVS 228 (614)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 888766 66666666655433
No 144
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.50 E-value=8.1e-14 Score=136.99 Aligned_cols=174 Identities=18% Similarity=0.250 Sum_probs=119.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh--hhchhHHH----------HHHHHHHHHhhCCceEEe
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK--YIGEGSRM----------VRELFVMAREHAPSIIFM 260 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~--~~g~~~~~----------i~~lf~~a~~~~psVl~i 260 (419)
..++++||.||||||||++++.+|..++.++++|+++..... ++|...-. ....+..|.. .+.++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEe
Confidence 346789999999999999999999999999999998866554 44432110 1122333433 4678999
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHHHHHHc-----cc----cccCCCeEEEEEeCCcc------------hhhHHhc
Q 014743 261 DEIDSIGSARMESGSGNGDSEVQRTMLELLNQL-----DG----FEASNKIKVLMATNRID------------ILDQALL 319 (419)
Q Consensus 261 DEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l-----~~----~~~~~~v~VI~tTn~~~------------~ld~all 319 (419)
||+|. ..++++..+..+|+.- .+ +....+..||+|+|..+ .++.+++
T Consensus 141 DEin~------------a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 141 DEYDA------------GRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred chhhc------------cCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 99998 5678888888888741 11 11234688999999754 4688999
Q ss_pred CCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCC----HHHHHHHc----------CCCCHHHHHHHHHHHHH
Q 014743 320 RPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID----LKKIAEKM----------NGASGAELKAVCTEAGM 381 (419)
Q Consensus 320 r~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~d----l~~la~~t----------~G~sgadi~~l~~~A~~ 381 (419)
. ||-..+.+..|+.+.-.+|+...........+.. +-.+|..| .|.|++.+..+.+.+.+
T Consensus 209 D--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~ 282 (327)
T TIGR01650 209 D--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEI 282 (327)
T ss_pred h--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHh
Confidence 9 9988889999999999999976543322000000 11233332 35688888877766543
No 145
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.48 E-value=2.5e-12 Score=121.05 Aligned_cols=196 Identities=21% Similarity=0.364 Sum_probs=120.3
Q ss_pred CCCCccccc-C--cHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEe
Q 014743 156 PDSTYDMIG-G--LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVS 227 (419)
Q Consensus 156 p~~~~~~I~-G--~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~ 227 (419)
|..+|++.+ | .+.+...+......| + ..-..+.||||+|+|||+|+++++++. +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 456777753 5 334444444443332 1 123458999999999999999999863 56789999
Q ss_pred CcchhhhhhchhHH-HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEE
Q 014743 228 GSELVQKYIGEGSR-MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 306 (419)
Q Consensus 228 ~s~l~~~~~g~~~~-~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~ 306 (419)
+.++...+...... .+.++.+. -....+|+||+++.+.. ....+..+..+++.+. ..++. +|+
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~--~~~~DlL~iDDi~~l~~----------~~~~q~~lf~l~n~~~---~~~k~-li~ 135 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDR--LRSADLLIIDDIQFLAG----------KQRTQEELFHLFNRLI---ESGKQ-LIL 135 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHH--HCTSSEEEEETGGGGTT----------HHHHHHHHHHHHHHHH---HTTSE-EEE
T ss_pred HHHHHHHHHHHHHcccchhhhhh--hhcCCEEEEecchhhcC----------chHHHHHHHHHHHHHH---hhCCe-EEE
Confidence 98888776544322 22232222 23567999999999842 2456777888887763 23344 555
Q ss_pred Ee-CCcch---hhHHhcCCCcee--EEEEcCCCCHHHHHHHHHHHHhhcccCCCCC-HHHHHHHcCCCCHHHHHHHHHHH
Q 014743 307 AT-NRIDI---LDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMNLMRGID-LKKIAEKMNGASGAELKAVCTEA 379 (419)
Q Consensus 307 tT-n~~~~---ld~allr~gRfd--~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~d-l~~la~~t~G~sgadi~~l~~~A 379 (419)
|+ ..|.. +++.+.+ ||. -.+.+.+|+.+.|.+|++......++.-+.+ +..|+....+ +.++|..++.+-
T Consensus 136 ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l 212 (219)
T PF00308_consen 136 TSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRL 212 (219)
T ss_dssp EESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHH
T ss_pred EeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 55 44454 4677877 774 4888999999999999998877655432222 4456666554 777777777654
Q ss_pred HH
Q 014743 380 GM 381 (419)
Q Consensus 380 ~~ 381 (419)
..
T Consensus 213 ~~ 214 (219)
T PF00308_consen 213 DA 214 (219)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 146
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.46 E-value=6.5e-13 Score=137.57 Aligned_cols=224 Identities=21% Similarity=0.288 Sum_probs=153.6
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCce--E---EEe
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF--I---RVS 227 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~--i---~v~ 227 (419)
.++++.+|++++|++.+++.|.+++..- +-+.++||.||.|||||++||.+|..++|.- . ...
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~ 75 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK 75 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh
Confidence 4678889999999999999999999863 4567899999999999999999998765542 0 001
Q ss_pred C---cchhhh-h---------hchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHH
Q 014743 228 G---SELVQK-Y---------IGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 290 (419)
Q Consensus 228 ~---s~l~~~-~---------~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL 290 (419)
| -++... + ...+-..+|++.+.+.- ..+.|.+|||++-|. ...+..+|
T Consensus 76 C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALL 140 (515)
T COG2812 76 CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALL 140 (515)
T ss_pred hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHh
Confidence 1 111000 1 11123446777776643 346799999988752 23345555
Q ss_pred HHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCC-HHHHHHHcCCCCH
Q 014743 291 NQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID-LKKIAEKMNGASG 369 (419)
Q Consensus 291 ~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~d-l~~la~~t~G~sg 369 (419)
..+. ++..+|++|++|..+..+++-+++ |+- .+.|...+.++...-|...+.+-.+.-+.+ +..+|...+| |.
T Consensus 141 KTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~ 214 (515)
T COG2812 141 KTLE--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SL 214 (515)
T ss_pred cccc--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Ch
Confidence 5554 256789999999999999999987 653 456888899988888887776655543333 6678888888 88
Q ss_pred HHHHHHHHHHHHHHH--------HhcCCCCCHHHHHHHHHHHHhhhhc
Q 014743 370 AELKAVCTEAGMFAL--------RERRIHVTQEDFEMAVAKVMKKETE 409 (419)
Q Consensus 370 adi~~l~~~A~~~a~--------~~~~~~vt~eD~~~Al~~v~~~~~~ 409 (419)
+|...++..|....- +.--..++.+.+...+..++..+..
T Consensus 215 RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~ 262 (515)
T COG2812 215 RDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLLEAILKGDAK 262 (515)
T ss_pred hhHHHHHHHHHHccCCcccHHHHHHHhCCCCHHHHHHHHHHHHccCHH
Confidence 999999988765542 1111234445555555555554433
No 147
>PRK06620 hypothetical protein; Validated
Probab=99.46 E-value=6.1e-12 Score=117.93 Aligned_cols=196 Identities=16% Similarity=0.197 Sum_probs=122.0
Q ss_pred cCCCCCccccc-Cc--HHHHHHHHHHhhcccCChhHHhhcCCCC-CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCc
Q 014743 154 KVPDSTYDMIG-GL--DQQIKEIKEVIELPIKHPELFESLGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229 (419)
Q Consensus 154 ~~p~~~~~~I~-G~--~~~~~~l~~~i~~~l~~~~~~~~~gi~~-p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s 229 (419)
..|..+|++++ |- ..+...+.++...+ +..+ ...++||||||||||+|++++++..+..++. ..
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~----------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~ 76 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF----------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DI 76 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc----------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hh
Confidence 34555677643 43 44566666554321 2223 2679999999999999999999887653322 11
Q ss_pred chhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 230 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 230 ~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
.. .... .....+|+||||+.+ . ...+..+++.+. ..+..+||.++.
T Consensus 77 ~~-----------~~~~-----~~~~d~lliDdi~~~-----------~----~~~lf~l~N~~~---e~g~~ilits~~ 122 (214)
T PRK06620 77 FF-----------NEEI-----LEKYNAFIIEDIENW-----------Q----EPALLHIFNIIN---EKQKYLLLTSSD 122 (214)
T ss_pred hh-----------chhH-----HhcCCEEEEeccccc-----------h----HHHHHHHHHHHH---hcCCEEEEEcCC
Confidence 10 0011 123479999999853 1 123445555443 234455666655
Q ss_pred Ccch--hhHHhcCCCcee--EEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 014743 310 RIDI--LDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL 384 (419)
Q Consensus 310 ~~~~--ld~allr~gRfd--~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~ 384 (419)
.|.. + |.+++ |+. .++.+.+|+.+.+..+++......++ .++.-++.|+.+..| +.+.+..++......+.
T Consensus 123 ~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~ 198 (214)
T PRK06620 123 KSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFAL 198 (214)
T ss_pred Cccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 5553 5 77887 875 46899999999999999887765433 222336678888776 77777777776443343
Q ss_pred HhcCCCCCHHHHHHHH
Q 014743 385 RERRIHVTQEDFEMAV 400 (419)
Q Consensus 385 ~~~~~~vt~eD~~~Al 400 (419)
. ....||.+.+..++
T Consensus 199 ~-~~~~it~~~~~~~l 213 (214)
T PRK06620 199 I-SKRKITISLVKEVL 213 (214)
T ss_pred H-cCCCCCHHHHHHHh
Confidence 3 34568888777665
No 148
>PRK05642 DNA replication initiation factor; Validated
Probab=99.45 E-value=1.2e-11 Score=117.53 Aligned_cols=179 Identities=18% Similarity=0.228 Sum_probs=117.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEeccccccccccc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARM 271 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~ 271 (419)
...++|+||+|||||+|++++++++ +..+++++..++.... ..+.+..+ ...+|+|||++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~--- 111 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAG--- 111 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcC---
Confidence 4678999999999999999999754 5667888877766531 12333333 236899999998632
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh---hHHhcCCCce--eEEEEcCCCCHHHHHHHHHHHH
Q 014743 272 ESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL---DQALLRPGRI--DRKIEFPNPNEESRLDILKIHS 346 (419)
Q Consensus 272 ~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l---d~allr~gRf--d~~I~~~~P~~~~r~~Il~~~~ 346 (419)
.+..+..+..+++.+. ..+..+|+.++..|..+ .|.+.+ || ...+.+.+|+.+++..|++...
T Consensus 112 -------~~~~~~~Lf~l~n~~~---~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 112 -------KADWEEALFHLFNRLR---DSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred -------ChHHHHHHHHHHHHHH---hcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 2344566777777652 23344444444455443 577887 88 4677789999999999998655
Q ss_pred hhccc-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 347 RRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 347 ~~~~~-~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
...++ .++.-+..|+.+.++ +++.+..++..-...++. ....||..-+..++
T Consensus 180 ~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 180 SRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 44332 122235667777776 777887777665444443 33557776666554
No 149
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.45 E-value=2.9e-12 Score=137.05 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHccccc----------------cCCCeEEEEEeCCc--chhhHHhcCCCcee---EEEEcCC---CC
Q 014743 279 DSEVQRTMLELLNQLDGFE----------------ASNKIKVLMATNRI--DILDQALLRPGRID---RKIEFPN---PN 334 (419)
Q Consensus 279 ~~~~~~~l~~lL~~l~~~~----------------~~~~v~VI~tTn~~--~~ld~allr~gRfd---~~I~~~~---P~ 334 (419)
.+..+..|.++|.+-.-.. -.-++.||+++|.. ..++|.|+. ||+ ..++|+. ++
T Consensus 230 ~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~ 307 (608)
T TIGR00764 230 PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDT 307 (608)
T ss_pred CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCC
Confidence 3566777777776532000 01267889999864 578999999 999 6676653 35
Q ss_pred HHHHHHHHHHHHh---hcccCCCCCHHHHHHHc------C------CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 335 EESRLDILKIHSR---RMNLMRGIDLKKIAEKM------N------GASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 335 ~~~r~~Il~~~~~---~~~~~~~~dl~~la~~t------~------G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
.+.|.++.+...+ +.+....++-+.++... . -.+.++|..+|++|...|..++...|+.+|+++|
T Consensus 308 ~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~A 387 (608)
T TIGR00764 308 PENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKA 387 (608)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHH
Confidence 6667666554332 22122334433222221 1 2346999999999988887778889999999999
Q ss_pred HHHHHh
Q 014743 400 VAKVMK 405 (419)
Q Consensus 400 l~~v~~ 405 (419)
++....
T Consensus 388 i~~~~~ 393 (608)
T TIGR00764 388 KKLAKT 393 (608)
T ss_pred HHHHHH
Confidence 886654
No 150
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.45 E-value=4.7e-12 Score=126.28 Aligned_cols=149 Identities=32% Similarity=0.405 Sum_probs=106.9
Q ss_pred cccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh--hhchh
Q 014743 162 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK--YIGEG 239 (419)
Q Consensus 162 ~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~--~~g~~ 239 (419)
.+.|.++++..+..++. .++++||.||||||||++|+++|..++.+|+++.|...+.. .+|..
T Consensus 25 ~~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 47787777777766654 35789999999999999999999999999999999754432 12211
Q ss_pred HHHH------------HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc-------cccCC
Q 014743 240 SRMV------------RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG-------FEASN 300 (419)
Q Consensus 240 ~~~i------------~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~-------~~~~~ 300 (419)
.-.. .-+|...+ +|+|+|||+. .++.+++.|+++|++... +.-..
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInr------------a~p~~q~aLl~~l~e~~vtv~~~~~~~~~~ 153 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINR------------APPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccc----eEEEEecccc------------CCHHHHHHHHHHHhCcEEEECCcCCcCCCC
Confidence 1000 01111111 4999999988 678999999999987332 22335
Q ss_pred CeEEEEEeC-----CcchhhHHhcCCCceeEEEEcCCC-CHHHHHHHHH
Q 014743 301 KIKVLMATN-----RIDILDQALLRPGRIDRKIEFPNP-NEESRLDILK 343 (419)
Q Consensus 301 ~v~VI~tTn-----~~~~ld~allr~gRfd~~I~~~~P-~~~~r~~Il~ 343 (419)
..+||+|+| ....+++++++ ||...++++.| +..+...++.
T Consensus 154 ~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 154 PFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred CCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHH
Confidence 688888889 44578999999 99889999999 4444444443
No 151
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.45 E-value=1.7e-12 Score=139.82 Aligned_cols=219 Identities=20% Similarity=0.271 Sum_probs=141.9
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-------------------
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT------------------- 219 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~------------------- 219 (419)
.|..|+|++.++..+.-+...| ...++||.||+|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4679999999998887666553 23579999999999999999999876
Q ss_pred ----------------CCceEEEeCcchhhhhhchhHHHHHHHHHH---------HHhhCCceEEecccccccccccCCC
Q 014743 220 ----------------DCTFIRVSGSELVQKYIGEGSRMVRELFVM---------AREHAPSIIFMDEIDSIGSARMESG 274 (419)
Q Consensus 220 ----------------~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~---------a~~~~psVl~iDEiD~l~~~r~~~~ 274 (419)
..+|+.+.++......+|... +...+.. .......|||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLL-------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhC--------
Confidence 235555544433333333210 0111100 00112359999999994
Q ss_pred CCCCCHHHHHHHHHHHHHcc------cc--ccCCCeEEEEEeCCc-chhhHHhcCCCceeEEEEcCCCC-HHHHHHHHHH
Q 014743 275 SGNGDSEVQRTMLELLNQLD------GF--EASNKIKVLMATNRI-DILDQALLRPGRIDRKIEFPNPN-EESRLDILKI 344 (419)
Q Consensus 275 ~~~~~~~~~~~l~~lL~~l~------~~--~~~~~v~VI~tTn~~-~~ld~allr~gRfd~~I~~~~P~-~~~r~~Il~~ 344 (419)
....+..|+++|++.. +. ....++.+|+|+|.. ..+.++|+. ||+..|.++.|. .+++.+|++.
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 5678888888887532 11 112368889988853 368889999 999999988774 5777777764
Q ss_pred HHhh----------c---------------ccCCCCC-----HHHHHHHc--CCC-CHHHHHHHHHHHHHHHHHhcCCCC
Q 014743 345 HSRR----------M---------------NLMRGID-----LKKIAEKM--NGA-SGAELKAVCTEAGMFALRERRIHV 391 (419)
Q Consensus 345 ~~~~----------~---------------~~~~~~d-----l~~la~~t--~G~-sgadi~~l~~~A~~~a~~~~~~~v 391 (419)
.... + .....+. +..++..+ -|. +.+-...+++.|...|..+++..|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V 292 (633)
T TIGR02442 213 RLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRV 292 (633)
T ss_pred HHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcC
Confidence 2210 0 0011111 22333332 244 344445677777778888899999
Q ss_pred CHHHHHHHHHHHHhh
Q 014743 392 TQEDFEMAVAKVMKK 406 (419)
Q Consensus 392 t~eD~~~Al~~v~~~ 406 (419)
+.+|+..|+.-++..
T Consensus 293 ~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 293 TAEDVREAAELVLPH 307 (633)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999999853
No 152
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=4.1e-12 Score=127.42 Aligned_cols=188 Identities=14% Similarity=0.158 Sum_probs=123.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc-------eEE-E
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------FIR-V 226 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-------~i~-v 226 (419)
..+..+++|+|++++++.+..++... ..|..+||+||+|+|||++|+.+|+.+.+. ... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 34667799999999999999999763 456789999999999999999999876441 100 0
Q ss_pred e---Cc-----------chh--hhhhch---------hHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCC
Q 014743 227 S---GS-----------ELV--QKYIGE---------GSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGN 277 (419)
Q Consensus 227 ~---~s-----------~l~--~~~~g~---------~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~ 277 (419)
. |. ++. ..-.+. .-..++.+.+... ...+.|++|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 1 11 000 000000 1123444443332 345679999999995
Q ss_pred CCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCH
Q 014743 278 GDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDL 357 (419)
Q Consensus 278 ~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl 357 (419)
+....+.|+..|.+. ..++++|+.|+.++.+.|.+++ |+ ..+.|++|+.++...++........+ ++..+
T Consensus 154 -~~~aanaLLk~LEEp-----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~ 223 (351)
T PRK09112 154 -NRNAANAILKTLEEP-----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEIT 223 (351)
T ss_pred -CHHHHHHHHHHHhcC-----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHH
Confidence 455566666666543 4567788888889999999988 87 58999999999999998864322211 12224
Q ss_pred HHHHHHcCCCCHHHHHHHH
Q 014743 358 KKIAEKMNGASGAELKAVC 376 (419)
Q Consensus 358 ~~la~~t~G~sgadi~~l~ 376 (419)
..++..+.| +++....++
T Consensus 224 ~~i~~~s~G-~pr~Al~ll 241 (351)
T PRK09112 224 EALLQRSKG-SVRKALLLL 241 (351)
T ss_pred HHHHHHcCC-CHHHHHHHH
Confidence 566777766 444444444
No 153
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.44 E-value=7.6e-12 Score=121.99 Aligned_cols=133 Identities=22% Similarity=0.219 Sum_probs=96.3
Q ss_pred CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc------------chhhHHhcCCC
Q 014743 255 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI------------DILDQALLRPG 322 (419)
Q Consensus 255 psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~------------~~ld~allr~g 322 (419)
|.||||||++- .|-+.+..|+..|. ..-.-+||++||+. .-+|..|+.
T Consensus 292 pGVLFIDEvHm------------LDIE~FsFlnrAlE------se~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD-- 351 (450)
T COG1224 292 PGVLFIDEVHM------------LDIECFSFLNRALE------SELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD-- 351 (450)
T ss_pred cceEEEechhh------------hhHHHHHHHHHHhh------cccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--
Confidence 77888888666 34455555554443 22235688999984 456667776
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014743 323 RIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 323 Rfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
|+- +|...+++.++.++|+++..+.-.+. ++--++.|+.....-|-+--.+|+.-|...|.+++...|..+|++.|..
T Consensus 352 Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 352 RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHH
Confidence 653 67777899999999999887654432 2334677787777777777788888899999999999999999999988
Q ss_pred HHHhhhh
Q 014743 402 KVMKKET 408 (419)
Q Consensus 402 ~v~~~~~ 408 (419)
-..-...
T Consensus 431 lF~D~kr 437 (450)
T COG1224 431 LFLDVKR 437 (450)
T ss_pred HHhhHHH
Confidence 7765443
No 154
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=5.3e-12 Score=127.29 Aligned_cols=180 Identities=18% Similarity=0.188 Sum_probs=121.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCce-----------
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF----------- 223 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~----------- 223 (419)
..+.++++|+|++.+++.+.+++... +.|..+||+||+|+||+++|.++|+.+-+.-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 35678899999999999999998763 5677899999999999999999998652210
Q ss_pred --EEE--eCc-----------chhhhhh---ch--------hHHHHHHHHHHHH----hhCCceEEecccccccccccCC
Q 014743 224 --IRV--SGS-----------ELVQKYI---GE--------GSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMES 273 (419)
Q Consensus 224 --i~v--~~s-----------~l~~~~~---g~--------~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~ 273 (419)
+.+ .|. ++..-.. +. .-..+|++.+.+. ...|.|++|||+|.
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~-------- 152 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADE-------- 152 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHh--------
Confidence 000 010 0000000 00 1123455544432 34578999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCC
Q 014743 274 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMR 353 (419)
Q Consensus 274 ~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~ 353 (419)
.+....+.|+..+.+- ..++++|++|+.++.+.|.+++ |+ ..+.|++|+.++..+++...... ..
T Consensus 153 ----m~~~aanaLLK~LEep-----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~ 217 (365)
T PRK07471 153 ----MNANAANALLKVLEEP-----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LP 217 (365)
T ss_pred ----cCHHHHHHHHHHHhcC-----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CC
Confidence 4566777777777653 4578889999999999998877 76 47899999999998888765321 11
Q ss_pred CCCHHHHHHHcCCCCH
Q 014743 354 GIDLKKIAEKMNGASG 369 (419)
Q Consensus 354 ~~dl~~la~~t~G~sg 369 (419)
+..+..++..+.|.-+
T Consensus 218 ~~~~~~l~~~s~Gsp~ 233 (365)
T PRK07471 218 DDPRAALAALAEGSVG 233 (365)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 1112456666666333
No 155
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=1.3e-11 Score=122.24 Aligned_cols=172 Identities=15% Similarity=0.253 Sum_probs=117.5
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc--------eEEEeCcc
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--------FIRVSGSE 230 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~--------~i~v~~s~ 230 (419)
+|++|+|++.+++.+...+... ..|..+||+||+|+|||++|+++|..+-+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 4789999999999999998652 456788999999999999999999865332 2222221
Q ss_pred hhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEE
Q 014743 231 LVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM 306 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~ 306 (419)
-+..+ .-..++++.+.+.. ....|++||++|.+ +....+.++..|.+ ...++++|+
T Consensus 69 -~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m------------~~~a~naLLK~LEe-----pp~~t~~il 128 (313)
T PRK05564 69 -NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM------------TEQAQNAFLKTIEE-----PPKGVFIIL 128 (313)
T ss_pred -cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhc------------CHHHHHHHHHHhcC-----CCCCeEEEE
Confidence 01111 12235666554432 34569999999884 34556666666654 456788888
Q ss_pred EeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCH
Q 014743 307 ATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASG 369 (419)
Q Consensus 307 tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sg 369 (419)
+|+.++.+.|.+++ |. ..+.|++|+.++....+......+ +......++..+.|-.+
T Consensus 129 ~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 129 LCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHH
Confidence 88999999999988 66 489999999998887776543211 12224456666666433
No 156
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.39 E-value=3.2e-11 Score=123.97 Aligned_cols=220 Identities=15% Similarity=0.147 Sum_probs=136.9
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC--ceEEEeCc-chhhhhhc
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGS-ELVQKYIG 237 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~--~~i~v~~s-~l~~~~~g 237 (419)
+.|.|.+++++.+..++. .+.++||+||||||||++|++|+...+. +|..+.+. ..-...+|
T Consensus 20 ~~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hhccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 578899999998887763 3578999999999999999999986542 33333222 01112222
Q ss_pred hh-HHHH--HHHHHHHHhh---CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc-----cCCCeEEEE
Q 014743 238 EG-SRMV--RELFVMAREH---APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-----ASNKIKVLM 306 (419)
Q Consensus 238 ~~-~~~i--~~lf~~a~~~---~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~-----~~~~v~VI~ 306 (419)
.. -... ..-|...... ...+||+|||.. ..+..++.|++.+++-.-.. .-...++++
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r------------asp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK------------AGPAILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeeccccc------------CCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 21 0000 0112211111 234999999976 56788999999997643110 112245566
Q ss_pred EeCCcch---hhHHhcCCCceeEEEEcCCCC-HHHHHHHHHHHHhh----cccCCCCC----------------------
Q 014743 307 ATNRIDI---LDQALLRPGRIDRKIEFPNPN-EESRLDILKIHSRR----MNLMRGID---------------------- 356 (419)
Q Consensus 307 tTn~~~~---ld~allr~gRfd~~I~~~~P~-~~~r~~Il~~~~~~----~~~~~~~d---------------------- 356 (419)
|||.... ..+++.. ||-..+.+|+|+ .++-.+|+...... .+....+.
T Consensus 153 ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~e 230 (498)
T PRK13531 153 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFE 230 (498)
T ss_pred ECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHH
Confidence 6674332 3358888 998899999997 46657777653210 10000011
Q ss_pred -HHHHHHH---cC---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhcc
Q 014743 357 -LKKIAEK---MN---GASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK 410 (419)
Q Consensus 357 -l~~la~~---t~---G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~~~ 410 (419)
+..|... +. ..|++--.++++.|...|.-.++..|+.+|+. .+..++....++
T Consensus 231 yI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HRl~~ 290 (498)
T PRK13531 231 LIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHDAQS 290 (498)
T ss_pred HHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccCHHH
Confidence 1123332 22 37888888888888888999999999999999 777777655443
No 157
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.39 E-value=3e-11 Score=116.44 Aligned_cols=192 Identities=17% Similarity=0.256 Sum_probs=120.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCC-ceEE--E-eC----cchhh---hhhchh------HHHHHHHH----HHHHhh
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDC-TFIR--V-SG----SELVQ---KYIGEG------SRMVRELF----VMAREH 253 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~-~~i~--v-~~----s~l~~---~~~g~~------~~~i~~lf----~~a~~~ 253 (419)
+..++|+||+|+|||++++.+++.+.. .+.. + ++ .++.. ...|.. ...++.+. ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 345889999999999999999998753 2221 1 11 11111 111211 11122222 223456
Q ss_pred CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch---h-h---HHhcCCCceeE
Q 014743 254 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI---L-D---QALLRPGRIDR 326 (419)
Q Consensus 254 ~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~---l-d---~allr~gRfd~ 326 (419)
.+.||+|||++.+ +......+..+.+... +....+.|+++ ..++. + + ..+.+ |+..
T Consensus 123 ~~~vliiDe~~~l------------~~~~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~ 185 (269)
T TIGR03015 123 KRALLVVDEAQNL------------TPELLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIA 185 (269)
T ss_pred CCeEEEEECcccC------------CHHHHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heee
Confidence 6789999999885 2233333333322211 12223334444 33332 1 1 12444 7888
Q ss_pred EEEcCCCCHHHHHHHHHHHHhhccc-----CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014743 327 KIEFPNPNEESRLDILKIHSRRMNL-----MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 327 ~I~~~~P~~~~r~~Il~~~~~~~~~-----~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
.+++++.+.++..+++...+...+. ..+..+..|+..+.|.. ..|..+|..+...|..++...|+.++++.++.
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 8999999999999999888765432 12234677899999975 56999999999999988999999999999998
Q ss_pred HHH
Q 014743 402 KVM 404 (419)
Q Consensus 402 ~v~ 404 (419)
.+.
T Consensus 265 ~~~ 267 (269)
T TIGR03015 265 EID 267 (269)
T ss_pred Hhh
Confidence 753
No 158
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.37 E-value=1.1e-11 Score=105.06 Aligned_cols=126 Identities=32% Similarity=0.491 Sum_probs=83.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCc---eEEEeCcchhhh--------------hhchhHHHHHHHHHHHHhhCCce
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCT---FIRVSGSELVQK--------------YIGEGSRMVRELFVMAREHAPSI 257 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~---~i~v~~s~l~~~--------------~~g~~~~~i~~lf~~a~~~~psV 257 (419)
+..++|+||||||||++++.+|..+... ++.++++..... .........+.++..++...|+|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5689999999999999999999988664 888888765432 12234556778888898888899
Q ss_pred EEecccccccccccCCCCCCCCHHHHHHHHHH--HHHccccccCCCeEEEEEeCC-cchhhHHhcCCCceeEEEEcCCC
Q 014743 258 IFMDEIDSIGSARMESGSGNGDSEVQRTMLEL--LNQLDGFEASNKIKVLMATNR-IDILDQALLRPGRIDRKIEFPNP 333 (419)
Q Consensus 258 l~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~l--L~~l~~~~~~~~v~VI~tTn~-~~~ld~allr~gRfd~~I~~~~P 333 (419)
||+||++.+.... ........ ...........+..+|+++|. ....+..+.+ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE-----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH-----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999974322 11111110 000001113456888899986 3334444444 88888887655
No 159
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.1e-11 Score=129.72 Aligned_cols=173 Identities=24% Similarity=0.366 Sum_probs=138.0
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCceEE
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIR 225 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~i~ 225 (419)
....++-|+|.++.++.+.+.+.+. ..++-+|.|+||+|||.++.-+|... +..++.
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 3445688999999999999998874 33444899999999999999999753 556888
Q ss_pred EeCcchh--hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeE
Q 014743 226 VSGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 303 (419)
Q Consensus 226 v~~s~l~--~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 303 (419)
+++..++ .+|-|+.+..++.+.+.+...++.|||||||+.|.+.....+ + ..+..+++...|. ++.+-
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G--~-a~DAaNiLKPaLA-------RGeL~ 301 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG--G-AMDAANLLKPALA-------RGELR 301 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc--c-ccchhhhhHHHHh-------cCCeE
Confidence 8888886 579999999999999999988899999999999987754322 1 3456677777774 45677
Q ss_pred EEEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCC
Q 014743 304 VLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG 354 (419)
Q Consensus 304 VI~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~ 354 (419)
+|++|+.-+ .-|+||-| ||- .|.+..|+.++-..||+-.-.++.....
T Consensus 302 ~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~ 354 (786)
T COG0542 302 CIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHG 354 (786)
T ss_pred EEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccC
Confidence 899888654 45889999 996 6899999999999999876665544333
No 160
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.35 E-value=5.4e-11 Score=124.92 Aligned_cols=212 Identities=20% Similarity=0.298 Sum_probs=136.5
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHh----hc--------------CC----CCC-CeEEEEcCCCC
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFE----SL--------------GI----AQP-KGVLLYGPPGT 206 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~----~~--------------gi----~~p-~~iLL~GPpGt 206 (419)
.|++++.+..|.|+.|-+..=+.+.-++... .|-.|. ++ +. +|+ +-+||+||||-
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~W--D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQW--DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhh--cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 7899999999999999988888777776432 111111 11 11 222 34778999999
Q ss_pred hHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHH--------hhCCceEEecccccccccccCCCCCCC
Q 014743 207 GKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR--------EHAPSIIFMDEIDSIGSARMESGSGNG 278 (419)
Q Consensus 207 GKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~--------~~~psVl~iDEiD~l~~~r~~~~~~~~ 278 (419)
||||||+.+|++.|..++.|+.|+-.+ ...++..+..|- ...|..|++||||- +
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG------------a 399 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG------------A 399 (877)
T ss_pred ChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccC------------C
Confidence 999999999999999999999997432 222333333222 24688999999986 4
Q ss_pred CHHHHHHHHHHHHHcc--ccccCC--------------CeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHH
Q 014743 279 DSEVQRTMLELLNQLD--GFEASN--------------KIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL 342 (419)
Q Consensus 279 ~~~~~~~l~~lL~~l~--~~~~~~--------------~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il 342 (419)
.....++++.++..-. .....+ ..-||+.+|+.. -|+|+.---|-.+|+|++|...-..+=|
T Consensus 400 ~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL 477 (877)
T KOG1969|consen 400 PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERL 477 (877)
T ss_pred cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHH
Confidence 4666777777776211 110110 234889999654 4666421158899999999987766555
Q ss_pred HHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 014743 343 KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386 (419)
Q Consensus 343 ~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~ 386 (419)
+....+-++ ..|...|+..++ ++..||++.++.--+.+...
T Consensus 478 ~~IC~rE~m--r~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 478 NEICHRENM--RADSKALNALCE-LTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred HHHHhhhcC--CCCHHHHHHHHH-HhcchHHHHHHHHHHHHHhc
Confidence 544433322 234444444444 23349998888776666543
No 161
>PHA02244 ATPase-like protein
Probab=99.35 E-value=3.2e-11 Score=120.17 Aligned_cols=131 Identities=22% Similarity=0.248 Sum_probs=88.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhch--hHHHH--HHHHHHHHhhCCceEEeccccccccc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE--GSRMV--RELFVMAREHAPSIIFMDEIDSIGSA 269 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~--~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~ 269 (419)
.+..+||+||||||||++|+++|..++.+|+.++...-.....|. ..+.+ ..++..+ ....+|+|||++.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~---- 191 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDA---- 191 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCc----
Confidence 456799999999999999999999999999999753111111111 00111 1222222 3457999999998
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHcc------ccccCCCeEEEEEeCCc-----------chhhHHhcCCCceeEEEEcCC
Q 014743 270 RMESGSGNGDSEVQRTMLELLNQLD------GFEASNKIKVLMATNRI-----------DILDQALLRPGRIDRKIEFPN 332 (419)
Q Consensus 270 r~~~~~~~~~~~~~~~l~~lL~~l~------~~~~~~~v~VI~tTn~~-----------~~ld~allr~gRfd~~I~~~~ 332 (419)
.++.++..|..+++..- ......++.+|+|+|.+ ..+++++++ ||- .|+|..
T Consensus 192 --------a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dy 260 (383)
T PHA02244 192 --------SIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDY 260 (383)
T ss_pred --------CCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCC
Confidence 45677777777775311 11223578999999973 578999999 996 699999
Q ss_pred CCHHHHHHHH
Q 014743 333 PNEESRLDIL 342 (419)
Q Consensus 333 P~~~~r~~Il 342 (419)
|+..+ ..|.
T Consensus 261 p~~~E-~~i~ 269 (383)
T PHA02244 261 DEKIE-HLIS 269 (383)
T ss_pred CcHHH-HHHh
Confidence 98433 3444
No 162
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.35 E-value=1.2e-10 Score=117.60 Aligned_cols=194 Identities=18% Similarity=0.339 Sum_probs=132.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEeccccccccc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 269 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~ 269 (419)
-+-++||||+|+|||+|++|++++. +..++.+....++..++......-.+-|..-. .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4568999999999999999999864 45688888888888877665444334555444 5679999999998654
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC-Ccch---hhHHhcCCCcee--EEEEcCCCCHHHHHHHHH
Q 014743 270 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN-RIDI---LDQALLRPGRID--RKIEFPNPNEESRLDILK 343 (419)
Q Consensus 270 r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn-~~~~---ld~allr~gRfd--~~I~~~~P~~~~r~~Il~ 343 (419)
. ..+..+..+++.+. ..++ .||+|+. .|.. +.|.|.+ ||. -.+.+.+|+.+.|..||.
T Consensus 191 ~----------~~qeefFh~FN~l~---~~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 191 E----------RTQEEFFHTFNALL---ENGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred h----------hHHHHHHHHHHHHH---hcCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHH
Confidence 3 23444555555442 2233 4555554 4544 4578888 885 467899999999999999
Q ss_pred HHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhh
Q 014743 344 IHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 408 (419)
Q Consensus 344 ~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~ 408 (419)
......++. ++.-..-+|.+... +.+++..++......+...++ .+|.+.+.+++..+.....
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcccc
Confidence 866554432 22225566777654 677888777776666654444 7788888888777776543
No 163
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.34 E-value=2e-11 Score=111.91 Aligned_cols=144 Identities=20% Similarity=0.304 Sum_probs=95.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCc------------------------eEEEeCcchhhhhhchhHHHHHHHHH
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCT------------------------FIRVSGSELVQKYIGEGSRMVRELFV 248 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~------------------------~i~v~~s~l~~~~~g~~~~~i~~lf~ 248 (419)
..+..+||+||+|+|||++++.++..+.+. +..+... ... .....++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHH
Confidence 456779999999999999999999876431 1111111 000 11234556666
Q ss_pred HHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCce
Q 014743 249 MARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRI 324 (419)
Q Consensus 249 ~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRf 324 (419)
.+.. ..+.||+|||+|.+. ...++.|+..+.+ ...++.+|++|+.+..+.+++.+ |+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~-----~~~~~~~il~~~~~~~l~~~i~s--r~ 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEE-----PPPNTLFILITPSPEKLLPTIRS--RC 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcC-----CCCCeEEEEEECChHhChHHHHh--hc
Confidence 6554 345699999999852 3344555555533 23467788888888999999988 66
Q ss_pred eEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCC
Q 014743 325 DRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNG 366 (419)
Q Consensus 325 d~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G 366 (419)
..+.|++|+.++..+++... ++. +..+..++..+.|
T Consensus 148 -~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 148 -QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred -EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 48999999999998888765 222 2235556666555
No 164
>PRK09087 hypothetical protein; Validated
Probab=99.34 E-value=3.8e-11 Score=113.51 Aligned_cols=173 Identities=18% Similarity=0.214 Sum_probs=109.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 274 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~ 274 (419)
...+.|+||+|||||+|+++++...+.. .++..++... ++..... .+|+|||++.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~------- 100 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAAE---GPVLIEDIDAGG------- 100 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhhc---CeEEEECCCCCC-------
Confidence 3458999999999999999999876544 3333222221 1111111 479999999752
Q ss_pred CCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh---hHHhcCCCcee--EEEEcCCCCHHHHHHHHHHHHhhc
Q 014743 275 SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL---DQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRM 349 (419)
Q Consensus 275 ~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l---d~allr~gRfd--~~I~~~~P~~~~r~~Il~~~~~~~ 349 (419)
.+ +..+..+++.+. ..++.+||.++..|..+ .+.+++ ||. ..+.+.+|+.+.|.+|++..+...
T Consensus 101 ---~~---~~~lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 101 ---FD---ETGLFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred ---CC---HHHHHHHHHHHH---hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 11 233555665542 22344444444444433 567777 874 789999999999999999888765
Q ss_pred ccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 014743 350 NLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 350 ~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v 403 (419)
.+. ++.-+..|+.+..| +.+.+..++..-...+.. ....+|...+..++..+
T Consensus 170 ~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~-~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 170 QLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALE-RKSRITRALAAEVLNEM 222 (226)
T ss_pred CCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhh
Confidence 432 22336678888775 445555555454444443 34568999988888765
No 165
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.33 E-value=1e-10 Score=108.89 Aligned_cols=194 Identities=19% Similarity=0.255 Sum_probs=133.2
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcc
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE 230 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~ 230 (419)
.++.....+|.|.+.+++.+.+..+..+. | .|.+++||+|..|||||+|+||+-++. +..++.|+..+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 45556778999999999999887765433 2 477899999999999999999998876 45588888777
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhC-CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~-psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
+.. +-.+++..+..+ +-|||+|++-- . .+......|..+|+.. --....||+|-+|+|
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF----------e-~gd~~yK~LKs~LeG~-ve~rP~NVl~YATSN 182 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSF----------E-EGDDAYKALKSALEGG-VEGRPANVLFYATSN 182 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCC----------C-CCchHHHHHHHHhcCC-cccCCCeEEEEEecC
Confidence 643 234555555433 45899998532 1 2233455566666421 112456999999999
Q ss_pred CcchhhHH--------------------hcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCC-CHH----HHHHHc
Q 014743 310 RIDILDQA--------------------LLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI-DLK----KIAEKM 364 (419)
Q Consensus 310 ~~~~ld~a--------------------llr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~-dl~----~la~~t 364 (419)
+-..++.. +--+.||.-.+.|++++.++-.+|+..+.+..++.-+. .++ ..|..-
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~r 262 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTR 262 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 97655421 11123999999999999999999999999888775431 121 234444
Q ss_pred CCCCHHHHHHHHH
Q 014743 365 NGASGAELKAVCT 377 (419)
Q Consensus 365 ~G~sgadi~~l~~ 377 (419)
.|-||+--...++
T Consensus 263 g~RSGR~A~QF~~ 275 (287)
T COG2607 263 GGRSGRVAWQFIR 275 (287)
T ss_pred CCCccHhHHHHHH
Confidence 5677766555544
No 166
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.32 E-value=2.4e-12 Score=111.90 Aligned_cols=112 Identities=34% Similarity=0.430 Sum_probs=75.3
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh--hhchhH---HH----HHHHHHHHHhhCCceEEeccccccc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK--YIGEGS---RM----VRELFVMAREHAPSIIFMDEIDSIG 267 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~--~~g~~~---~~----i~~lf~~a~~~~psVl~iDEiD~l~ 267 (419)
+|||+||||||||++++.+|..++.+++.+.++..... .+|.-. .. -..+...+ ..+.|++|||++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~-- 76 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINR-- 76 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCccc--
Confidence 58999999999999999999999999999988754321 111100 00 00011111 1578999999998
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHcccc-------c-cCC------CeEEEEEeCCcc----hhhHHhcCCCce
Q 014743 268 SARMESGSGNGDSEVQRTMLELLNQLDGF-------E-ASN------KIKVLMATNRID----ILDQALLRPGRI 324 (419)
Q Consensus 268 ~~r~~~~~~~~~~~~~~~l~~lL~~l~~~-------~-~~~------~v~VI~tTn~~~----~ld~allr~gRf 324 (419)
.++++...++.+++.-... . ... +..||+|+|..+ .++++|++ ||
T Consensus 77 ----------a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 77 ----------APPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 5688888888888753211 1 111 389999999988 99999999 87
No 167
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=7e-11 Score=116.94 Aligned_cols=178 Identities=16% Similarity=0.240 Sum_probs=121.2
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc----------------
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------------- 222 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~---------------- 222 (419)
.|++|+|++.+++.+..++... +-|..+||+||+|+||+++|+++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4789999999999999999763 457899999999999999999999865221
Q ss_pred --eEEEeCcchh-hh--------hhc--------hhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCC
Q 014743 223 --FIRVSGSELV-QK--------YIG--------EGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGD 279 (419)
Q Consensus 223 --~i~v~~s~l~-~~--------~~g--------~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~ 279 (419)
++.+.+.... ++ ..| -.-..++++.+.+.. ..+.|++||++|.+ +
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------~ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------N 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc------------C
Confidence 1222211000 00 000 001235666555543 34679999999884 4
Q ss_pred HHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHH
Q 014743 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKK 359 (419)
Q Consensus 280 ~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~ 359 (419)
....+.|+..|.+- . ++++|++|+.++.+.|.+++ |. ..+.|++|+.++..++|......- ..+.+...
T Consensus 138 ~~aaNaLLK~LEEP-----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~--~~~~~~~~ 206 (314)
T PRK07399 138 EAAANALLKTLEEP-----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE--ILNINFPE 206 (314)
T ss_pred HHHHHHHHHHHhCC-----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc--cchhHHHH
Confidence 55667777777653 3 56788899999999999998 76 579999999999998888653211 11122467
Q ss_pred HHHHcCCCCHHH
Q 014743 360 IAEKMNGASGAE 371 (419)
Q Consensus 360 la~~t~G~sgad 371 (419)
++....|--+.-
T Consensus 207 l~~~a~Gs~~~a 218 (314)
T PRK07399 207 LLALAQGSPGAA 218 (314)
T ss_pred HHHHcCCCHHHH
Confidence 777777744433
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=7.1e-11 Score=126.09 Aligned_cols=205 Identities=13% Similarity=0.195 Sum_probs=121.7
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEE-Ee
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VS 227 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~-v~ 227 (419)
..|.+++.+.++++++|+++.++.++.++... .++..++..++|+||||||||++++++|+.++..++. ++
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~n 143 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSN 143 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhh
Confidence 45788999999999999999999999988653 2233455669999999999999999999987654433 11
Q ss_pred Cc---chhh---------hhh---chhHHHHHHHHHHHHh----------hCCceEEecccccccccccCCCCCCCCHHH
Q 014743 228 GS---ELVQ---------KYI---GEGSRMVRELFVMARE----------HAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 228 ~s---~l~~---------~~~---g~~~~~i~~lf~~a~~----------~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
.. .... ..+ ......++.++..+.. ....||||||++.++.. . ...
T Consensus 144 pv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~-~~~ 214 (637)
T TIGR00602 144 PTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------D-TRA 214 (637)
T ss_pred hhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------h-HHH
Confidence 11 0000 000 1122234445554442 24569999999986532 1 112
Q ss_pred HHHHHHHHH-HccccccCCCeEEEEEeCC-cc--------------hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHH
Q 014743 283 QRTMLELLN-QLDGFEASNKIKVLMATNR-ID--------------ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHS 346 (419)
Q Consensus 283 ~~~l~~lL~-~l~~~~~~~~v~VI~tTn~-~~--------------~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~ 346 (419)
+..+|. ... ..+.+.+|++++. +. .+.+++++..|+. +|.|++.+.....+.|+..+
T Consensus 215 ---lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 215 ---LHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred ---HHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHH
Confidence 222322 111 1234445554442 11 1336777433453 79999999999777766555
Q ss_pred hhcc--cCC------CCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 014743 347 RRMN--LMR------GIDLKKIAEKMNGASGAELKAVCTEAGM 381 (419)
Q Consensus 347 ~~~~--~~~------~~dl~~la~~t~G~sgadi~~l~~~A~~ 381 (419)
.... ... ...+..|+....| |++..+..--+
T Consensus 288 ~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf 326 (637)
T TIGR00602 288 TIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQF 326 (637)
T ss_pred HhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHH
Confidence 4321 111 1235566775555 77766654333
No 169
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.29 E-value=1.4e-10 Score=121.30 Aligned_cols=212 Identities=20% Similarity=0.266 Sum_probs=131.0
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC--ceEEEeCcch----
Q 014743 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGSEL---- 231 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~--~~i~v~~s~l---- 231 (419)
..|++|.|+..+++.+.-++ ..+.+++|+||||||||++++.++..+.. .-..+....+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 47899999998877665543 34578999999999999999999974310 0111111111
Q ss_pred ----------------------hhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHH
Q 014743 232 ----------------------VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 289 (419)
Q Consensus 232 ----------------------~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~l 289 (419)
....+|.+...--..+..| ...+|||||++.+ ...++..|.+.
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~------------~~~~~~~L~~~ 318 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF------------KRSVLDALREP 318 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC------------CHHHHHHHHHH
Confidence 1111121100000122222 3459999999884 46778888888
Q ss_pred HHHccc--------cccCCCeEEEEEeCCc------c-----------------hhhHHhcCCCceeEEEEcCCCCHHH-
Q 014743 290 LNQLDG--------FEASNKIKVLMATNRI------D-----------------ILDQALLRPGRIDRKIEFPNPNEES- 337 (419)
Q Consensus 290 L~~l~~--------~~~~~~v~VI~tTn~~------~-----------------~ld~allr~gRfd~~I~~~~P~~~~- 337 (419)
|+...- .....++.+|+++|.- + .+...|+. |||-.+.++.++..+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL 396 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH
Confidence 865321 1112478899999852 1 46778888 999999999765432
Q ss_pred ------------HHHHHHHHH---hhc------ccCCCCCHH----------------HHHHHcCCCCHHHHHHHHHHHH
Q 014743 338 ------------RLDILKIHS---RRM------NLMRGIDLK----------------KIAEKMNGASGAELKAVCTEAG 380 (419)
Q Consensus 338 ------------r~~Il~~~~---~~~------~~~~~~dl~----------------~la~~t~G~sgadi~~l~~~A~ 380 (419)
|..+.+... .++ .+...+.-. .-+....+.|.+-...+++-|.
T Consensus 397 ~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvAr 476 (499)
T TIGR00368 397 LSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVAR 476 (499)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 333432211 111 111111111 1122334689999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHH
Q 014743 381 MFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 381 ~~a~~~~~~~vt~eD~~~Al~ 401 (419)
-.|--++...|+.+|+.+|+.
T Consensus 477 TiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 477 TIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHhhcCCCCCCHHHHHHHHh
Confidence 899888999999999999985
No 170
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.1e-11 Score=118.19 Aligned_cols=87 Identities=26% Similarity=0.350 Sum_probs=61.6
Q ss_pred CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcc-----ccccCCCeEEEEEe----CCcchhhHHhcCCCcee
Q 014743 255 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD-----GFEASNKIKVLMAT----NRIDILDQALLRPGRID 325 (419)
Q Consensus 255 psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~-----~~~~~~~v~VI~tT----n~~~~ld~allr~gRfd 325 (419)
-.||||||||+++.+...++..-...-+++-++.++..-. |.-+.+.+++|++. ..|++|-|+|. |||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 4699999999999876432212223456777776664211 11233467788774 57889999995 5999
Q ss_pred EEEEcCCCCHHHHHHHHH
Q 014743 326 RKIEFPNPNEESRLDILK 343 (419)
Q Consensus 326 ~~I~~~~P~~~~r~~Il~ 343 (419)
-.+++...+.++-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999999984
No 171
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.28 E-value=4.7e-11 Score=121.86 Aligned_cols=144 Identities=24% Similarity=0.375 Sum_probs=92.0
Q ss_pred cccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC--ce-----EEEeCc---
Q 014743 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TF-----IRVSGS--- 229 (419)
Q Consensus 160 ~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~--~~-----i~v~~s--- 229 (419)
++++.+.++.++.+...+. .+++++|+||||||||++|+.+|..+.. .+ +.+..+
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 3567777877777766653 3578999999999999999999987632 22 222221
Q ss_pred -chhhhh----hchh--HHHHHHHHHHHHhh--CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHc-------
Q 014743 230 -ELVQKY----IGEG--SRMVRELFVMAREH--APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL------- 293 (419)
Q Consensus 230 -~l~~~~----~g~~--~~~i~~lf~~a~~~--~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l------- 293 (419)
+++..+ +|.. .+.+.+++..|+.. .|.|||||||+.- .-..+...+.++|+.-
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa-----------ni~kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA-----------NLSKVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc-----------CHHHhhhhhhhhccccccccccc
Confidence 222222 1111 12334555667654 4799999999882 1123344445544421
Q ss_pred ----------cccccCCCeEEEEEeCCcc----hhhHHhcCCCceeEEEEcCC
Q 014743 294 ----------DGFEASNKIKVLMATNRID----ILDQALLRPGRIDRKIEFPN 332 (419)
Q Consensus 294 ----------~~~~~~~~v~VI~tTn~~~----~ld~allr~gRfd~~I~~~~ 332 (419)
+.+.-..|+.||+|+|..+ .+|.||+| ||.. |++.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 1133345899999999987 89999999 9964 55554
No 172
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.26 E-value=1e-10 Score=115.50 Aligned_cols=148 Identities=24% Similarity=0.360 Sum_probs=101.9
Q ss_pred cccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC---------------------
Q 014743 162 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--------------------- 220 (419)
Q Consensus 162 ~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--------------------- 220 (419)
++.|.++++..+..++... | ..|..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 5678888888888877632 1 2334699999999999999999999764
Q ss_pred ---CceEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHc
Q 014743 221 ---CTFIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 293 (419)
Q Consensus 221 ---~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l 293 (419)
..++.++.++....- .....++++...... ....||+|||+|.+ +.+..+.+...+.+
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m------------t~~A~nallk~lEe- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL------------TEDAANALLKTLEE- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH------------hHHHHHHHHHHhcc-
Confidence 356777766543321 122334454444333 34679999999995 33455556555543
Q ss_pred cccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHH
Q 014743 294 DGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL 342 (419)
Q Consensus 294 ~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il 342 (419)
...++.+|++||+++.+-+.+.+ |+- .+.|++|+........
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWL 177 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHh
Confidence 46789999999999999998887 664 6888886655544333
No 173
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.25 E-value=4.2e-11 Score=127.02 Aligned_cols=210 Identities=22% Similarity=0.288 Sum_probs=134.7
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh
Q 014743 157 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ 233 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~ 233 (419)
..++++++|....++++.+.+... ......|||+|++|||||++|++|.... +.+|+.++|..+-.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 357789999999999999888653 1345679999999999999999999764 57899999987633
Q ss_pred hh-----hchhHHHH-------HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc----
Q 014743 234 KY-----IGEGSRMV-------RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE---- 297 (419)
Q Consensus 234 ~~-----~g~~~~~i-------~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~---- 297 (419)
.. +|...+.. ...|+.+ ...+||||||+.+ +...+..+..+|.......
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L------------~~~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI------------SPAFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC------------CHHHHHHHHHHHhcCcEEECCCC
Confidence 21 12111000 0112222 3568999999994 4678888888887532110
Q ss_pred --cCCCeEEEEEeCCcc-------hhhHHhcCCCcee-EEEEcCCCC--HHHHHHHHHHHHhhcc----cCCCCC---HH
Q 014743 298 --ASNKIKVLMATNRID-------ILDQALLRPGRID-RKIEFPNPN--EESRLDILKIHSRRMN----LMRGID---LK 358 (419)
Q Consensus 298 --~~~~v~VI~tTn~~~-------~ld~allr~gRfd-~~I~~~~P~--~~~r~~Il~~~~~~~~----~~~~~d---l~ 358 (419)
...++.+|+||+..- .+.+.|.. |+. ..|.+|+.. .++...|++.++.... ....++ +.
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~ 403 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR 403 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 112578888887531 22333333 443 467777775 3556667776665432 111233 33
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 014743 359 KIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFE 397 (419)
Q Consensus 359 ~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~ 397 (419)
.|......-+.++|++++.+|...+ ....|+.+|+.
T Consensus 404 ~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 404 VLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 3444443446689999999887654 45578888875
No 174
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.24 E-value=3.3e-10 Score=121.10 Aligned_cols=196 Identities=22% Similarity=0.288 Sum_probs=128.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchhhhhhchhHHHHHHHHHH---------HHhhCCceEEeccc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQKYIGEGSRMVRELFVM---------AREHAPSIIFMDEI 263 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~~~~~g~~~~~i~~lf~~---------a~~~~psVl~iDEi 263 (419)
-.++||.|+||||||++|++++..+. .+|+++..+......+|... +...+.. .......+||+|||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 35899999999999999999999764 35888875433333344320 0000000 00112359999999
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHcc------ccc--cCCCeEEEEEeCCcc---hhhHHhcCCCceeEEEEcC-
Q 014743 264 DSIGSARMESGSGNGDSEVQRTMLELLNQLD------GFE--ASNKIKVLMATNRID---ILDQALLRPGRIDRKIEFP- 331 (419)
Q Consensus 264 D~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~------~~~--~~~~v~VI~tTn~~~---~ld~allr~gRfd~~I~~~- 331 (419)
+. ..+..+..|++.|++.. +.. ...++.||+|+|..+ .++++++. ||+..+.+.
T Consensus 94 ~r------------l~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~ 159 (589)
T TIGR02031 94 NL------------LDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLED 159 (589)
T ss_pred hh------------CCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCC
Confidence 99 45778888999887542 111 123678898888765 78899999 999887766
Q ss_pred CCCHHHHHHHHHHHHhhcc-------------------cCCCC-----CHHHHHHHc--CCCC-HHHHHHHHHHHHHHHH
Q 014743 332 NPNEESRLDILKIHSRRMN-------------------LMRGI-----DLKKIAEKM--NGAS-GAELKAVCTEAGMFAL 384 (419)
Q Consensus 332 ~P~~~~r~~Il~~~~~~~~-------------------~~~~~-----dl~~la~~t--~G~s-gadi~~l~~~A~~~a~ 384 (419)
+|+.++|.+|++....... ....+ .+..|+..+ -|.+ .+--..+++.|...|.
T Consensus 160 ~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aa 239 (589)
T TIGR02031 160 VASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAA 239 (589)
T ss_pred CCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH
Confidence 4577888998876542110 01111 122232222 2444 3334456677777888
Q ss_pred HhcCCCCCHHHHHHHHHHHHhh
Q 014743 385 RERRIHVTQEDFEMAVAKVMKK 406 (419)
Q Consensus 385 ~~~~~~vt~eD~~~Al~~v~~~ 406 (419)
-+++..|+.+|+..|+.-|+..
T Consensus 240 l~gr~~V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 240 LHGRTEVTEEDLKLAVELVLLP 261 (589)
T ss_pred HhCCCCCCHHHHHHHHHHHhhh
Confidence 8899999999999999999853
No 175
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.24 E-value=2.7e-10 Score=120.03 Aligned_cols=194 Identities=20% Similarity=0.225 Sum_probs=122.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCc-eEEE---eCcchhhhhhch---hHHHHH-HHHHHHHhhCCceEEecccccc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCT-FIRV---SGSELVQKYIGE---GSRMVR-ELFVMAREHAPSIIFMDEIDSI 266 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~-~i~v---~~s~l~~~~~g~---~~~~i~-~lf~~a~~~~psVl~iDEiD~l 266 (419)
..++||+|+||||||++|++++...... +... ++..+....+.. ++..++ ..+. .....+++|||+|.+
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l 312 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALV---LADNGVCCIDEFDKM 312 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEE---ecCCCEEEEechhhC
Confidence 3479999999999999999999866433 2211 111121110000 000000 0111 123459999999994
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHcc------cc--ccCCCeEEEEEeCCcc-------------hhhHHhcCCCcee
Q 014743 267 GSARMESGSGNGDSEVQRTMLELLNQLD------GF--EASNKIKVLMATNRID-------------ILDQALLRPGRID 325 (419)
Q Consensus 267 ~~~r~~~~~~~~~~~~~~~l~~lL~~l~------~~--~~~~~v~VI~tTn~~~-------------~ld~allr~gRfd 325 (419)
.+..+..+.+.|.+-. |. .-..++.||+|+|... .+++++++ |||
T Consensus 313 ------------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFd 378 (509)
T smart00350 313 ------------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFD 378 (509)
T ss_pred ------------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--cee
Confidence 4567778888876422 11 1124688999999652 58999999 999
Q ss_pred EEEE-cCCCCHHHHHHHHHHHHhhcc-----------------------------cCCCCC---HHHHH-----HH----
Q 014743 326 RKIE-FPNPNEESRLDILKIHSRRMN-----------------------------LMRGID---LKKIA-----EK---- 363 (419)
Q Consensus 326 ~~I~-~~~P~~~~r~~Il~~~~~~~~-----------------------------~~~~~d---l~~la-----~~---- 363 (419)
-.+. ...|+.+...+|.+..+.... +.+.+. ...|. .+
T Consensus 379 Li~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~ 458 (509)
T smart00350 379 LLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDS 458 (509)
T ss_pred eEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccc
Confidence 7654 568899998888876432110 000111 01110 01
Q ss_pred ------cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 364 ------MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 364 ------t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
.-+.|++.+..|++-|-..|..+.+..|+.+|+..|++-+..
T Consensus 459 ~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 459 QSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred ccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 125688999999999999998899999999999999987653
No 176
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.5e-11 Score=114.55 Aligned_cols=128 Identities=26% Similarity=0.460 Sum_probs=88.2
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcC----CCC-CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh-h
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLG----IAQ-PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-K 234 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~g----i~~-p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~-~ 234 (419)
+-|+||+.+++.+.-++.. |-......+ +.- -.++||.||+|||||+||+.||+.++.||..-++..+.. .
T Consensus 61 ~YVIGQe~AKKvLsVAVYN---HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYN---HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeehh---HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 5689999999998777654 222221111 111 256999999999999999999999999999999988864 6
Q ss_pred hhchhHH-HHHHHHHHH----HhhCCceEEecccccccccccCCC-CCC-CCHHHHHHHHHHHH
Q 014743 235 YIGEGSR-MVRELFVMA----REHAPSIIFMDEIDSIGSARMESG-SGN-GDSEVQRTMLELLN 291 (419)
Q Consensus 235 ~~g~~~~-~i~~lf~~a----~~~~psVl~iDEiD~l~~~r~~~~-~~~-~~~~~~~~l~~lL~ 291 (419)
|+|+.-. .+-.++..| .+....||+|||||++..+..+.. +.. .-.-++..|+.++.
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiE 201 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIE 201 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHc
Confidence 9998544 445555543 233456999999999987653321 111 11346777777765
No 177
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.22 E-value=8.9e-11 Score=108.72 Aligned_cols=139 Identities=24% Similarity=0.364 Sum_probs=91.8
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCce
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTF 223 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~ 223 (419)
..|++++.+..+.||+|.++.++.+.-.... ..-.+++|.|||||||||-+.+||+++ ...+
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~v 81 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAV 81 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHh
Confidence 3488999999999999999999999877654 233578999999999999999999976 2456
Q ss_pred EEEeCcchhhhhhchhHHHHHHHHHHHHhh-CC---ceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC
Q 014743 224 IRVSGSELVQKYIGEGSRMVRELFVMAREH-AP---SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 299 (419)
Q Consensus 224 i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~-~p---sVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~ 299 (419)
+.++.|+-.+- ......+ ..|.+-+-. +| .||++||+|++ +.++....++++ ++ .+
T Consensus 82 LELNASdeRGI--DvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSM--------T~gAQQAlRRtM-Ei--------yS 141 (333)
T KOG0991|consen 82 LELNASDERGI--DVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSM--------TAGAQQALRRTM-EI--------YS 141 (333)
T ss_pred hhccCcccccc--HHHHHHH-HHHHHhhccCCCCceeEEEeeccchh--------hhHHHHHHHHHH-HH--------Hc
Confidence 77777753221 1111122 334433322 23 49999999985 222322222222 22 13
Q ss_pred CCeEEEEEeCCcchhhHHhcC
Q 014743 300 NKIKVLMATNRIDILDQALLR 320 (419)
Q Consensus 300 ~~v~VI~tTn~~~~ld~allr 320 (419)
+.+.+.+++|..+.+-..+.+
T Consensus 142 ~ttRFalaCN~s~KIiEPIQS 162 (333)
T KOG0991|consen 142 NTTRFALACNQSEKIIEPIQS 162 (333)
T ss_pred ccchhhhhhcchhhhhhhHHh
Confidence 456688899988777665555
No 178
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=1.3e-10 Score=115.87 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=104.6
Q ss_pred cccccC-cHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc----------------
Q 014743 160 YDMIGG-LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------------- 222 (419)
Q Consensus 160 ~~~I~G-~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~---------------- 222 (419)
|++|.| ++.+++.+...+... +.|..+||+||+|+|||++|+++|+.+-+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 677777 999999999988652 567788999999999999999999865321
Q ss_pred --------eEEEeCcchhhhhhchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHH
Q 014743 223 --------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 290 (419)
Q Consensus 223 --------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL 290 (419)
+..+... +..+ .-..++++.+.+. .....|++|||+|.+ ..+.++.|+..|
T Consensus 72 ~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~------------~~~a~NaLLK~L 134 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKM------------TASAANSLLKFL 134 (329)
T ss_pred HhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhh------------CHHHHHHHHHHh
Confidence 1111110 0101 1124555554443 234569999999884 345566666666
Q ss_pred HHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHH
Q 014743 291 NQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKI 344 (419)
Q Consensus 291 ~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~ 344 (419)
.+ ..+++++|++|+.+..+.|.+++ |. ..++|++|+.++...++..
T Consensus 135 EE-----Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EE-----PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cC-----CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 54 35678889999999999999988 65 4789999999888777753
No 179
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.18 E-value=3.1e-10 Score=122.86 Aligned_cols=212 Identities=18% Similarity=0.255 Sum_probs=130.5
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh
Q 014743 157 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ 233 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~ 233 (419)
..+|++++|.+...+.+.+.+... ...+..|||+|++||||+++|++|.... +.+|+.|+|..+-.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 457899999999888888877652 1334569999999999999999998764 57999999986632
Q ss_pred -----hhhchhH----HHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC-----
Q 014743 234 -----KYIGEGS----RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS----- 299 (419)
Q Consensus 234 -----~~~g~~~----~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~----- 299 (419)
.++|+.. ......|+.| ....||||||+.+ +...+..|..+|+.-.-....
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l------------~~~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL------------SPELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC------------CHHHHHHHHHHHhcCcEEeCCCCceE
Confidence 2333210 0000123322 3568999999994 567888888888653211111
Q ss_pred -CCeEEEEEeCCcchhhHHhcCCCce---------eEEEEcCCCCH--HHHHHHHHHHHhhcc----cCCCCC---HHHH
Q 014743 300 -NKIKVLMATNRIDILDQALLRPGRI---------DRKIEFPNPNE--ESRLDILKIHSRRMN----LMRGID---LKKI 360 (419)
Q Consensus 300 -~~v~VI~tTn~~~~ld~allr~gRf---------d~~I~~~~P~~--~~r~~Il~~~~~~~~----~~~~~d---l~~l 360 (419)
-++.||+|||..- ..+...|+| ...|.+|+... ++...+++.++..+. ....+. +..|
T Consensus 455 ~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 455 PVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 1577899888632 122222333 34566666543 345555666655432 111233 3334
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 361 AEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 361 a~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
....-.-+.++|++++++|...+ ....|+.+|+...+
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 44443346689999998877654 33456777766554
No 180
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.18 E-value=2.8e-10 Score=113.44 Aligned_cols=196 Identities=21% Similarity=0.228 Sum_probs=124.7
Q ss_pred cccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh--
Q 014743 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK-- 234 (419)
Q Consensus 160 ~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~-- 234 (419)
+++++|.....+.+.+.+... ...+..|||+|++||||+++|++|-... +.+|+.++|..+-..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 467899999999998888653 1345679999999999999999997654 578999999876321
Q ss_pred ---hhchhHHH-------HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc------c
Q 014743 235 ---YIGEGSRM-------VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE------A 298 (419)
Q Consensus 235 ---~~g~~~~~-------i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~------~ 298 (419)
++|...+. ....|+.| ....|||||||.+ ....+..+..+++...... .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L------------~~~~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA------------PMLVQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC------------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 22221100 01223333 3458999999994 4677888888886532110 1
Q ss_pred CCCeEEEEEeCCc-------chhhHHhcCCCce-eEEEEcCCCCH--HHHHHHHHHHHhhcc----cC--CCCCHHH---
Q 014743 299 SNKIKVLMATNRI-------DILDQALLRPGRI-DRKIEFPNPNE--ESRLDILKIHSRRMN----LM--RGIDLKK--- 359 (419)
Q Consensus 299 ~~~v~VI~tTn~~-------~~ld~allr~gRf-d~~I~~~~P~~--~~r~~Il~~~~~~~~----~~--~~~dl~~--- 359 (419)
..++.||+||+.. ..+.+.|.. || ...|.+|+... ++...++..++.... .. ..++-+.
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~ 216 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET 216 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 1257888888763 245566666 77 45677777643 445556666554432 11 2334333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Q 014743 360 IAEKMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 360 la~~t~G~sgadi~~l~~~A~~~a 383 (419)
|....---+-++|++++.+|...+
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhc
Confidence 333333345689999998887643
No 181
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.17 E-value=5.6e-10 Score=111.18 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=47.9
Q ss_pred cccCcHHHHHHHHHHhhcccCChhHHhhcCCC-CCCeEEEEcCCCChHHHHHHHHHhccCC-------ceEEEeC
Q 014743 162 MIGGLDQQIKEIKEVIELPIKHPELFESLGIA-QPKGVLLYGPPGTGKTLLARAVAHHTDC-------TFIRVSG 228 (419)
Q Consensus 162 ~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~-~p~~iLL~GPpGtGKT~LakalA~~~~~-------~~i~v~~ 228 (419)
++.|+++++.++.+++.... .|.. ..+.++|+|||||||||+|++|++.++. +++.+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 89999999999999887642 2333 3466899999999999999999997754 7888776
No 182
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=5.5e-10 Score=111.18 Aligned_cols=130 Identities=22% Similarity=0.359 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCc------------------------eEEEeCcchhhhhhchhHHHHHHHHH
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCT------------------------FIRVSGSELVQKYIGEGSRMVRELFV 248 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~------------------------~i~v~~s~l~~~~~g~~~~~i~~lf~ 248 (419)
+.|..+||+||+|+|||++|+++|..+.+. ++.+...+ .++. -.-..+|++.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~~--i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADKT--IKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCCC--CCHHHHHHHHH
Confidence 456789999999999999999999865431 22221110 0000 12235666665
Q ss_pred HHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCce
Q 014743 249 MARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRI 324 (419)
Q Consensus 249 ~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRf 324 (419)
.+.. ....|++||++|.+ +.+..+.++..|.+ ..+++++|++|+.++.+.|.+++ |+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m------------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc 157 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM------------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RC 157 (328)
T ss_pred HHhhccccCCCeEEEECChhhC------------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hc
Confidence 5543 34679999999994 45566777776664 35689999999999999999998 87
Q ss_pred eEEEEcCCCCHHHHHHHHHHH
Q 014743 325 DRKIEFPNPNEESRLDILKIH 345 (419)
Q Consensus 325 d~~I~~~~P~~~~r~~Il~~~ 345 (419)
- .+.|++|+.++..+.|...
T Consensus 158 ~-~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 158 Q-QQACPLPSNEESLQWLQQA 177 (328)
T ss_pred e-eeeCCCcCHHHHHHHHHHh
Confidence 5 4899999999888777654
No 183
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.16 E-value=3.7e-10 Score=118.88 Aligned_cols=212 Identities=17% Similarity=0.224 Sum_probs=132.1
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhc---cCCceEEEeCcchhhh
Q 014743 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSELVQK 234 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~---~~~~~i~v~~s~l~~~ 234 (419)
.+|++++|....++.+.+.+... ......|||+|++||||+++|++|-.. .+.+|+.++|..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 56789999999999999888642 134578999999999999999999865 3679999999866332
Q ss_pred -----hhchhHH--------HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc----
Q 014743 235 -----YIGEGSR--------MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE---- 297 (419)
Q Consensus 235 -----~~g~~~~--------~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~---- 297 (419)
.+|+.++ .-..+|+.|. ...||||||+.+ +...+..|+.+|.+..-..
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L------------p~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM------------PLPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC------------CHHHHHHHHHHHhcCcEEecCCC
Confidence 2332111 1123444442 358999999994 5678888888887632111
Q ss_pred --cCCCeEEEEEeCCcc-------hhhHHhcCCCcee-EEEEcCCCCH--HHHHHHHHHHHhhcccC--CCCCHHH----
Q 014743 298 --ASNKIKVLMATNRID-------ILDQALLRPGRID-RKIEFPNPNE--ESRLDILKIHSRRMNLM--RGIDLKK---- 359 (419)
Q Consensus 298 --~~~~v~VI~tTn~~~-------~ld~allr~gRfd-~~I~~~~P~~--~~r~~Il~~~~~~~~~~--~~~dl~~---- 359 (419)
..-++.||++||..- .+.+.|.. |+. ..|.+|+... ++...++..++...... ..+.-..
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 112567888887642 23334433 453 4667776643 45555666666553211 1122222
Q ss_pred ------HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 014743 360 ------IAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFE 397 (419)
Q Consensus 360 ------la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~ 397 (419)
|.....--+-++|++++.++...+.......++.+|+.
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 22333333558999999988776421123356666654
No 184
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.15 E-value=3.3e-10 Score=112.99 Aligned_cols=193 Identities=21% Similarity=0.254 Sum_probs=120.1
Q ss_pred ccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh-----
Q 014743 163 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK----- 234 (419)
Q Consensus 163 I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~----- 234 (419)
++|.....+.+.+.+... ......|||+|++||||+++|++|-... +.+|+.|+|..+-..
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 467777777777777542 1345679999999999999999997644 579999999865332
Q ss_pred hhchhHHH-------HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc------ccCCC
Q 014743 235 YIGEGSRM-------VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF------EASNK 301 (419)
Q Consensus 235 ~~g~~~~~-------i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~------~~~~~ 301 (419)
.+|...+. ...+|+.| ....||||||+.+ +...+..|+.+|...... ....+
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATA------------SLLVQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred HhccccccccCcccccCCchhhC---CCCEEEeCChHhC------------CHHHHHHHHHHHHcCcEEecCCCceeccc
Confidence 12221110 01123333 3569999999994 567888888888753210 11246
Q ss_pred eEEEEEeCCc-------chhhHHhcCCCcee-EEEEcCCCC--HHHHHHHHHHHHhhcc----cC--CCCCH---HHHHH
Q 014743 302 IKVLMATNRI-------DILDQALLRPGRID-RKIEFPNPN--EESRLDILKIHSRRMN----LM--RGIDL---KKIAE 362 (419)
Q Consensus 302 v~VI~tTn~~-------~~ld~allr~gRfd-~~I~~~~P~--~~~r~~Il~~~~~~~~----~~--~~~dl---~~la~ 362 (419)
+.||++||.. ..+.+.|.. ||. ..|.+|+.. .++...+++.++.... .. ..++- ..|..
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE 212 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence 7899998853 234566666 773 456677665 3555556666554422 11 22333 33333
Q ss_pred HcCCCCHHHHHHHHHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a 383 (419)
...--+.++|++++.++...+
T Consensus 213 y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 213 YHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCCchHHHHHHHHHHHHHhC
Confidence 333335688999998887655
No 185
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.15 E-value=2.1e-09 Score=112.17 Aligned_cols=212 Identities=19% Similarity=0.228 Sum_probs=130.0
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC--ceEEEeCcch----
Q 014743 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGSEL---- 231 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~--~~i~v~~s~l---- 231 (419)
..|.++.|+..+++.+.-. +..+.+++|+||||||||++++.++..+.. .-..+.++.+
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 3677888988766654321 245678999999999999999999975421 1111111111
Q ss_pred --------------hhh--------hhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHH
Q 014743 232 --------------VQK--------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 289 (419)
Q Consensus 232 --------------~~~--------~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~l 289 (419)
.+. .+|.+...-...+..|.. .+||+||++. .++..+..|.+.
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e------------~~~~~~~~L~~~ 317 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPE------------FERRTLDALREP 317 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchh------------CCHHHHHHHHHH
Confidence 100 122211111123344433 4999999987 346778888888
Q ss_pred HHHccc--------cccCCCeEEEEEeCCcc---------------------hhhHHhcCCCceeEEEEcCCCCHHH---
Q 014743 290 LNQLDG--------FEASNKIKVLMATNRID---------------------ILDQALLRPGRIDRKIEFPNPNEES--- 337 (419)
Q Consensus 290 L~~l~~--------~~~~~~v~VI~tTn~~~---------------------~ld~allr~gRfd~~I~~~~P~~~~--- 337 (419)
|.+..- .....++.+|+|+|... .++..++. |||-.+.++.|+.++
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~ 395 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSK 395 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhc
Confidence 865321 01124688999999742 36678888 999999999885321
Q ss_pred -------HH----HHHHH---HHhh-cccCCCCCHH----------------HHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 014743 338 -------RL----DILKI---HSRR-MNLMRGIDLK----------------KIAEKMNGASGAELKAVCTEAGMFALRE 386 (419)
Q Consensus 338 -------r~----~Il~~---~~~~-~~~~~~~dl~----------------~la~~t~G~sgadi~~l~~~A~~~a~~~ 386 (419)
.. .+... .... -.+...+.-. .-+....|.|.+....+++-|.-.|.-+
T Consensus 396 ~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~ 475 (506)
T PRK09862 396 TVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADID 475 (506)
T ss_pred ccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 11 22111 0000 0111111111 1122345889999999999999999999
Q ss_pred cCCCCCHHHHHHHHH
Q 014743 387 RRIHVTQEDFEMAVA 401 (419)
Q Consensus 387 ~~~~vt~eD~~~Al~ 401 (419)
++..|+.+|+..|+.
T Consensus 476 g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 476 QSDIITRQHLQEAVS 490 (506)
T ss_pred CCCCCCHHHHHHHHH
Confidence 999999999999987
No 186
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.14 E-value=3.7e-09 Score=102.66 Aligned_cols=211 Identities=19% Similarity=0.315 Sum_probs=131.8
Q ss_pred cccCcHHHH---HHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---------CCceEEEeCc
Q 014743 162 MIGGLDQQI---KEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGS 229 (419)
Q Consensus 162 ~I~G~~~~~---~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---------~~~~i~v~~s 229 (419)
.-+|+..+. +.+.+.+..|-. ....++||+|++|.|||++++..+... ..+++.+.+.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~----------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR----------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc----------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 446666554 445555555511 234579999999999999999998632 3467777664
Q ss_pred c------hhhh--------h-hc-hhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHc
Q 014743 230 E------LVQK--------Y-IG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 293 (419)
Q Consensus 230 ~------l~~~--------~-~g-~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l 293 (419)
. |+.. | .. .....-.++....+...+.+|+|||++.++.. ...-++.++.+|..+
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG---------s~~~qr~~Ln~LK~L 175 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG---------SYRKQREFLNALKFL 175 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc---------cHHHHHHHHHHHHHH
Confidence 2 1111 1 01 11223345556677888999999999997542 223355555556555
Q ss_pred cccccCCCeEEEEEeCC--cc--hhhHHhcCCCceeEEEEcCCCC-HHHHHHHHHHHHhhcccCC--CCCH----HHHHH
Q 014743 294 DGFEASNKIKVLMATNR--ID--ILDQALLRPGRIDRKIEFPNPN-EESRLDILKIHSRRMNLMR--GIDL----KKIAE 362 (419)
Q Consensus 294 ~~~~~~~~v~VI~tTn~--~~--~ld~allr~gRfd~~I~~~~P~-~~~r~~Il~~~~~~~~~~~--~~dl----~~la~ 362 (419)
. +.-++.+|+.... .. .-|+.+-+ ||+ .+.+|.-. .++-..++..+-..+++.. .+.- ..|-.
T Consensus 176 ~---NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~ 249 (302)
T PF05621_consen 176 G---NELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHE 249 (302)
T ss_pred h---hccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 2 2223444444322 12 23567777 997 45566443 2445557777666666532 2322 34566
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEM 398 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~ 398 (419)
.|+|..| ++..++..|+..|++.+...||.+.++.
T Consensus 250 ~s~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 250 RSEGLIG-ELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HcCCchH-HHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 7888666 8889999999999999999999988876
No 187
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.13 E-value=1.2e-10 Score=107.58 Aligned_cols=46 Identities=33% Similarity=0.517 Sum_probs=36.5
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
.|.+|.||+.+++.+.-+..- +.++||+||||||||++|+.+..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999998876642 4689999999999999999999743
No 188
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.13 E-value=2.5e-09 Score=106.02 Aligned_cols=64 Identities=33% Similarity=0.557 Sum_probs=46.1
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchh
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELV 232 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~ 232 (419)
+-++||.++-+..--.+..- +-|--.++++||.||||||||.||-++|++++ .||..+++|+++
T Consensus 24 ~GlVGQ~~AReAagiiv~mI--------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMI--------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHH--------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccChHHHHHHHHHHHHHH--------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 67899999888776555441 11223578999999999999999999999985 889999998763
No 189
>PRK04132 replication factor C small subunit; Provisional
Probab=99.13 E-value=1.5e-09 Score=118.82 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=113.8
Q ss_pred CeEEEEc--CCCChHHHHHHHHHhcc-----CCceEEEeCcchhhhhhchhHHHHHHHHHHHHhh------CCceEEecc
Q 014743 196 KGVLLYG--PPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREH------APSIIFMDE 262 (419)
Q Consensus 196 ~~iLL~G--PpGtGKT~LakalA~~~-----~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~------~psVl~iDE 262 (419)
-+-+..| |++.||||+|++||+++ +.+++.+++++..+. ..++++...+... .+.|+||||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 3456678 99999999999999987 557999999974221 2455555443322 236999999
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHH
Q 014743 263 IDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIL 342 (419)
Q Consensus 263 iD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il 342 (419)
+|.+ ....++.|..++.+. .+++.+|++||.+..+.+.+++ |+ ..+.|++|+.++....+
T Consensus 639 aD~L------------t~~AQnALLk~lEep-----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 639 ADAL------------TQDAQQALRRTMEMF-----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred cccC------------CHHHHHHHHHHhhCC-----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHH
Confidence 9995 345667777777542 4688999999999999999988 76 57899999999988888
Q ss_pred HHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHH
Q 014743 343 KIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEA 379 (419)
Q Consensus 343 ~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A 379 (419)
+....+-++. ++..+..++..++| +.+..-++++.+
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~ 735 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 735 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 7766543332 33457888888888 444444555544
No 190
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.12 E-value=5.2e-10 Score=117.83 Aligned_cols=198 Identities=20% Similarity=0.288 Sum_probs=122.6
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhc-----------cCCceEEE
Q 014743 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH-----------TDCTFIRV 226 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~-----------~~~~~i~v 226 (419)
..|++|+|....++.+.+.+... ...+..|||+|++||||+++|++|-.. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 45788999999999999988642 134568999999999999999999876 36789999
Q ss_pred eCcchhhh-----hhchhHHH--------HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHc
Q 014743 227 SGSELVQK-----YIGEGSRM--------VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 293 (419)
Q Consensus 227 ~~s~l~~~-----~~g~~~~~--------i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l 293 (419)
+|..+-.. .+|+..+. -..+|+.|. ...||||||+.+ ....+..|+.+|.+.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L------------p~~~Q~kLl~~L~e~ 349 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM------------PLPLQTRLLRVLEEK 349 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC------------CHHHHHHHHhhhhcC
Confidence 99876432 23322111 112454442 348999999994 567888888888764
Q ss_pred cccc------cCCCeEEEEEeCCcc-h------hhHHhcCCCcee-EEEEcCCCCH--HHHHHHHHHHHhhcc--cCCCC
Q 014743 294 DGFE------ASNKIKVLMATNRID-I------LDQALLRPGRID-RKIEFPNPNE--ESRLDILKIHSRRMN--LMRGI 355 (419)
Q Consensus 294 ~~~~------~~~~v~VI~tTn~~~-~------ld~allr~gRfd-~~I~~~~P~~--~~r~~Il~~~~~~~~--~~~~~ 355 (419)
.-.. ..-++.||++||..- . +.+.|.. |+. ..|.+|+... ++...++..+++... ....+
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 2111 112568899887641 1 2223332 332 3455665532 445555666665421 11112
Q ss_pred CH----------HHHHHHcCCCCHHHHHHHHHHHHHHH
Q 014743 356 DL----------KKIAEKMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 356 dl----------~~la~~t~G~sgadi~~l~~~A~~~a 383 (419)
.- ..|.....--+-++|++++.+++..+
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 21 12222222335699999999987754
No 191
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.12 E-value=8.1e-11 Score=100.38 Aligned_cols=107 Identities=29% Similarity=0.462 Sum_probs=63.1
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEEeCc-chh-hhhhch-----hHHH----HHHHHHHHHhhCCceEEeccccc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS-ELV-QKYIGE-----GSRM----VRELFVMAREHAPSIIFMDEIDS 265 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s-~l~-~~~~g~-----~~~~----i~~lf~~a~~~~psVl~iDEiD~ 265 (419)
|+||.|+||+|||++|+++|..++..|.+|.+. ++. +...|. ..+. -.-+| ..|+|+|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999999875 332 111121 0000 01111 24999999988
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHccc------cccCCCeEEEEEeCCcc-----hhhHHhcCCCce
Q 014743 266 IGSARMESGSGNGDSEVQRTMLELLNQLDG------FEASNKIKVLMATNRID-----ILDQALLRPGRI 324 (419)
Q Consensus 266 l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~------~~~~~~v~VI~tTn~~~-----~ld~allr~gRf 324 (419)
..+.++..+++.+.+..- +.-....+||+|-|..+ .++.+++. ||
T Consensus 74 ------------appktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 ------------APPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------------S-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ------------CCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 668899999999987432 22235688999999876 67788887 76
No 192
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.4e-09 Score=106.97 Aligned_cols=96 Identities=33% Similarity=0.559 Sum_probs=71.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh-hhhhchh-HHHHHHHHHHHH----hhCCceEEeccccccccc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV-QKYIGEG-SRMVRELFVMAR----EHAPSIIFMDEIDSIGSA 269 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~-~~~~g~~-~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~ 269 (419)
.+|||.||+|+|||+||+.||+.++.||...+|..+- ..|+|+. +..+..++..|. +.+-.||||||+|+|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4699999999999999999999999999999999886 4689874 556666666542 345569999999999844
Q ss_pred ccCCCCC--CCCHHHHHHHHHHHH
Q 014743 270 RMESGSG--NGDSEVQRTMLELLN 291 (419)
Q Consensus 270 r~~~~~~--~~~~~~~~~l~~lL~ 291 (419)
-.+-... -.-.-++..|+.++.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllE 330 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLE 330 (564)
T ss_pred CccccccccccchhHHHHHHHHhc
Confidence 3211111 112346777777775
No 193
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.11 E-value=5.4e-10 Score=105.21 Aligned_cols=132 Identities=27% Similarity=0.415 Sum_probs=90.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCc--------------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS-------------------------------------- 229 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s-------------------------------------- 229 (419)
+.+.++..+-+.||+|||||||.+.+|+-. ...-+.+++.
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~ 103 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS 103 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccc
Confidence 446778889999999999999999999733 2223333331
Q ss_pred ------------------chhhhhhchhHHHHHHHHHHHH--hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHH
Q 014743 230 ------------------ELVQKYIGEGSRMVRELFVMAR--EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 289 (419)
Q Consensus 230 ------------------~l~~~~~g~~~~~i~~lf~~a~--~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~l 289 (419)
.+..+|+.+.++++++-...|| ...|.|+++|| |.+..|...+..|.+.
T Consensus 104 ~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE-----------PFgALDalTR~~lq~~ 172 (248)
T COG1116 104 KAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE-----------PFGALDALTREELQDE 172 (248)
T ss_pred hHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC-----------CcchhhHHHHHHHHHH
Confidence 1234466676676666555554 57799999999 6677888888888877
Q ss_pred HHHccccccCCCeEEEEEeCCcchhh---HHh--c--CCCceeEEEEcCCCCH
Q 014743 290 LNQLDGFEASNKIKVLMATNRIDILD---QAL--L--RPGRIDRKIEFPNPNE 335 (419)
Q Consensus 290 L~~l~~~~~~~~v~VI~tTn~~~~ld---~al--l--r~gRfd~~I~~~~P~~ 335 (419)
+-.+ ....+..|++.||+.++.- ..+ + +|+++-..+.++.|.+
T Consensus 173 l~~l---w~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rp 222 (248)
T COG1116 173 LLRL---WEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRP 222 (248)
T ss_pred HHHH---HHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCC
Confidence 7666 3456688999999866321 111 1 4667766777776643
No 194
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.11 E-value=1.1e-09 Score=117.28 Aligned_cols=133 Identities=20% Similarity=0.251 Sum_probs=84.6
Q ss_pred ceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc-------------c---CCCeEEEEEeCCc--chhhHH
Q 014743 256 SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-------------A---SNKIKVLMATNRI--DILDQA 317 (419)
Q Consensus 256 sVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~-------------~---~~~v~VI~tTn~~--~~ld~a 317 (419)
.+|||||++.| ++..+..|.++|..-.-.. . .-++.||+++|+. ..++|+
T Consensus 228 GtL~LDei~~L------------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpd 295 (637)
T PRK13765 228 GVLFIDEINTL------------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPA 295 (637)
T ss_pred cEEEEeChHhC------------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHH
Confidence 35677776663 4567777777775432100 0 1157889999874 567899
Q ss_pred hcCCCcee---EEEEcCC---CCHHHHHHHHHHHHhhcc---cCCCCCHHHHHHHc------CC------CCHHHHHHHH
Q 014743 318 LLRPGRID---RKIEFPN---PNEESRLDILKIHSRRMN---LMRGIDLKKIAEKM------NG------ASGAELKAVC 376 (419)
Q Consensus 318 llr~gRfd---~~I~~~~---P~~~~r~~Il~~~~~~~~---~~~~~dl~~la~~t------~G------~sgadi~~l~ 376 (419)
|.. ||. ..+.|.. -+.+.+..+++...+... ....++-..++... .| ..-++|..++
T Consensus 296 L~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~ 373 (637)
T PRK13765 296 LRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLV 373 (637)
T ss_pred HHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHH
Confidence 988 875 5666652 245666667664443332 12344433332221 12 3368999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014743 377 TEAGMFALRERRIHVTQEDFEMAVAK 402 (419)
Q Consensus 377 ~~A~~~a~~~~~~~vt~eD~~~Al~~ 402 (419)
++|...|..+....++.+|+..|+..
T Consensus 374 r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 374 RVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHHHHHHhhccceecHHHHHHHHHh
Confidence 99999998888889999999988753
No 195
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.10 E-value=2.1e-09 Score=113.47 Aligned_cols=198 Identities=21% Similarity=0.258 Sum_probs=125.5
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh-
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK- 234 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~- 234 (419)
.+.+|+|....++.+.+.+... ...+..|||+|++|||||++|++|.... +.+|+.++|..+-..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 4578999999999999988752 1346789999999999999999998764 578999999876432
Q ss_pred ----hhchhHHH-------HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc------c
Q 014743 235 ----YIGEGSRM-------VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF------E 297 (419)
Q Consensus 235 ----~~g~~~~~-------i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~------~ 297 (419)
.+|...+. ....|+.| ....|||||||.+ ....+..+..+++..... .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L------------~~~~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL------------PLALQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC------------CHHHHHHHHHHHhcCCEeeCCCCcc
Confidence 22221110 01124333 3458999999995 467788888888753211 0
Q ss_pred cCCCeEEEEEeCCcc-------hhhHHhcCCCcee-EEEEcCCCCH--HHHHHHHHHHHhhccc-----CCCCC---HHH
Q 014743 298 ASNKIKVLMATNRID-------ILDQALLRPGRID-RKIEFPNPNE--ESRLDILKIHSRRMNL-----MRGID---LKK 359 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~-------~ld~allr~gRfd-~~I~~~~P~~--~~r~~Il~~~~~~~~~-----~~~~d---l~~ 359 (419)
...++.||++||..- .+.+.|.. |+. ..|.+|+... ++...+++.++..... ...+. +..
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 396 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 113678999998642 23344443 443 3466666643 3444555555544321 11233 333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHH
Q 014743 360 IAEKMNGASGAELKAVCTEAGMFAL 384 (419)
Q Consensus 360 la~~t~G~sgadi~~l~~~A~~~a~ 384 (419)
|.....--+.++|++++.+|+..+.
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 4444334466999999999987764
No 196
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.10 E-value=1.2e-09 Score=115.57 Aligned_cols=210 Identities=18% Similarity=0.244 Sum_probs=126.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcch
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL 231 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l 231 (419)
....+|++++|.....+++.+.+... . .....+||+|++||||+++|+++-... ..+|+.++|+.+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~-------A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKL-------A----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHH-------h----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 35578899999999888887777532 0 234569999999999999999986543 568999999876
Q ss_pred hhh-----hhchhHH-------HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc--c-
Q 014743 232 VQK-----YIGEGSR-------MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG--F- 296 (419)
Q Consensus 232 ~~~-----~~g~~~~-------~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~--~- 296 (419)
-.. .+|...+ ....+|+.| ....|||||||.+ +...+..+.++++...- .
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L------------~~~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEM------------SPRMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhC------------CHHHHHHHHHHHhcCCcccCC
Confidence 432 2232110 011234443 3458999999994 46778888888875321 1
Q ss_pred ---ccCCCeEEEEEeCCc-c------hhhHHhcCCCcee-EEEEcCCCCH--HHHHHHHHHHHhhc----cc-CCCCCHH
Q 014743 297 ---EASNKIKVLMATNRI-D------ILDQALLRPGRID-RKIEFPNPNE--ESRLDILKIHSRRM----NL-MRGIDLK 358 (419)
Q Consensus 297 ---~~~~~v~VI~tTn~~-~------~ld~allr~gRfd-~~I~~~~P~~--~~r~~Il~~~~~~~----~~-~~~~dl~ 358 (419)
....++.||+||+.. . .+.+.|.. |+. ..|.+|+... ++...++..++... +. ...+.-+
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 112357788888754 2 23344554 543 4566666543 34444555554432 21 1123333
Q ss_pred HHHHH---cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 014743 359 KIAEK---MNGASGAELKAVCTEAGMFALRERRIHVTQED 395 (419)
Q Consensus 359 ~la~~---t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD 395 (419)
.+... ...-+-++|++++.+|...+ ....++.+|
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~ 446 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQD 446 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHH
Confidence 33332 22235588888888887654 233444444
No 197
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.09 E-value=1.9e-09 Score=97.35 Aligned_cols=122 Identities=25% Similarity=0.418 Sum_probs=81.9
Q ss_pred ccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh-----
Q 014743 163 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK----- 234 (419)
Q Consensus 163 I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~----- 234 (419)
|+|.+...+.+.+.+... ...+..|||+|++||||+++|++|-+.. +.+|+.|+|+.+-..
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 567777888887777643 1345789999999999999999998865 578999999876432
Q ss_pred hhchhHH-------HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc------ccCCC
Q 014743 235 YIGEGSR-------MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF------EASNK 301 (419)
Q Consensus 235 ~~g~~~~-------~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~------~~~~~ 301 (419)
.+|...+ ...-+|+.|... .||||||+.| .+.++..|+++|+...-. ...-+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL------------PPELQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-------------HHHHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhh------------HHHHHHHHHHHHhhchhcccccccccccc
Confidence 3333211 012456655444 9999999994 578899999999864211 11237
Q ss_pred eEEEEEeCC
Q 014743 302 IKVLMATNR 310 (419)
Q Consensus 302 v~VI~tTn~ 310 (419)
+.||+||+.
T Consensus 135 ~RiI~st~~ 143 (168)
T PF00158_consen 135 VRIIASTSK 143 (168)
T ss_dssp EEEEEEESS
T ss_pred ceEEeecCc
Confidence 999999995
No 198
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.08 E-value=5.6e-09 Score=109.71 Aligned_cols=224 Identities=17% Similarity=0.308 Sum_probs=142.8
Q ss_pred cccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCceEEEeCcch
Q 014743 162 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGSEL 231 (419)
Q Consensus 162 ~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~i~v~~s~l 231 (419)
.+-+.+....+|..++...+.. + ..+..+.+.|-||||||.+++.+-.++ ...++.|++-.+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-Q-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-C-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 3455566666666665543221 0 123357788999999999999998743 356888888766
Q ss_pred hhh----------hhchhHH------HHHHHHHHH-HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcc
Q 014743 232 VQK----------YIGEGSR------MVRELFVMA-REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD 294 (419)
Q Consensus 232 ~~~----------~~g~~~~------~i~~lf~~a-~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~ 294 (419)
.+. +.|+... .+..-|... -...++||+|||+|.|+... +.+|..+++.-.
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~------------QdVlYn~fdWpt 536 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS------------QDVLYNIFDWPT 536 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc------------HHHHHHHhcCCc
Confidence 432 2222111 122222211 12457899999999987543 456666665432
Q ss_pred ccccCCCeEEEEEeCCcchhhHHhcC--CCcee-EEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCH--
Q 014743 295 GFEASNKIKVLMATNRIDILDQALLR--PGRID-RKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASG-- 369 (419)
Q Consensus 295 ~~~~~~~v~VI~tTn~~~~ld~allr--~gRfd-~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sg-- 369 (419)
....+++||+..|..+....-|.+ .-|++ ..|.|.+++..+..+|+...+........--..-+|+.-...||
T Consensus 537 --~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDa 614 (767)
T KOG1514|consen 537 --LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDA 614 (767)
T ss_pred --CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccH
Confidence 134578888888877654443432 11444 46889999999999999988876633332224445555555555
Q ss_pred HHHHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhhh
Q 014743 370 AELKAVCTEAGMFALRERR-------IHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 370 adi~~l~~~A~~~a~~~~~-------~~vt~eD~~~Al~~v~~~~ 407 (419)
+-...+|++|...|-.+.. ..|+..|+..|+..++.+.
T Consensus 615 Rraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhh
Confidence 4445789999988876544 5589999999999998654
No 199
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.08 E-value=8.3e-10 Score=111.34 Aligned_cols=201 Identities=23% Similarity=0.277 Sum_probs=129.0
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHh---c-cCCceEEEeCcch
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH---H-TDCTFIRVSGSEL 231 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~---~-~~~~~i~v~~s~l 231 (419)
.+..+++++|.+...+++.+.|... .+.+..+|++|++||||+++|+.|.. . .+.+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 3455689999998888888877651 14567799999999999999999974 2 4789999999887
Q ss_pred hhh-----hhchhH-------HHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc---
Q 014743 232 VQK-----YIGEGS-------RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF--- 296 (419)
Q Consensus 232 ~~~-----~~g~~~-------~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~--- 296 (419)
... .+|..+ ..-.-+|+.|-.. .||+|||..+ .+..+..++.+|++..-.
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~L------------P~~~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRL------------PPEGQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhC------------CHhHHHHHHHHHHcCceEecC
Confidence 543 222211 1123455555444 9999999884 467888899999874211
Q ss_pred ---ccCCCeEEEEEeCCc--chhhH--HhcCCCceeEEEEcCCCCHH--HHHHHHHHHHh----hcccCCCCCHHHH---
Q 014743 297 ---EASNKIKVLMATNRI--DILDQ--ALLRPGRIDRKIEFPNPNEE--SRLDILKIHSR----RMNLMRGIDLKKI--- 360 (419)
Q Consensus 297 ---~~~~~v~VI~tTn~~--~~ld~--allr~gRfd~~I~~~~P~~~--~r~~Il~~~~~----~~~~~~~~dl~~l--- 360 (419)
....+|.+|+|||.. +.+-. .|.+ -|+...|.+|+..+. ++..+++.+++ +++.....+....
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 122478899988742 23333 3332 156778888877653 34444444443 3333333332121
Q ss_pred --HHHcCCCCHHHHHHHHHHHHHHHH
Q 014743 361 --AEKMNGASGAELKAVCTEAGMFAL 384 (419)
Q Consensus 361 --a~~t~G~sgadi~~l~~~A~~~a~ 384 (419)
+...+| +-+++++++.+++..+.
T Consensus 286 L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 286 LLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred HHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 222334 55899999999887773
No 200
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.08 E-value=1.2e-09 Score=98.05 Aligned_cols=134 Identities=25% Similarity=0.371 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC-----------------------
Q 014743 165 GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC----------------------- 221 (419)
Q Consensus 165 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~----------------------- 221 (419)
|++++++.|.+.+... ..|..+||+||+|+||+++|+++|..+-+
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 8899999999998763 56788999999999999999999985421
Q ss_pred ceEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc
Q 014743 222 TFIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297 (419)
Q Consensus 222 ~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~ 297 (419)
.++.++...... . -.-..++.+...+.. ..+.|++||++|.+ ..+.++.|+..|.+
T Consensus 69 d~~~~~~~~~~~-~--i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l------------~~~a~NaLLK~LEe----- 128 (162)
T PF13177_consen 69 DFIIIKPDKKKK-S--IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL------------TEEAQNALLKTLEE----- 128 (162)
T ss_dssp TEEEEETTTSSS-S--BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS-----
T ss_pred ceEEEecccccc-h--hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh------------hHHHHHHHHHHhcC-----
Confidence 233332221100 0 122345555554432 34669999999994 56778888888775
Q ss_pred cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCC
Q 014743 298 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 333 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P 333 (419)
...++.+|++|+.++.+.|.+++ |.- .+.|++.
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 45789999999999999999998 663 5666654
No 201
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.1e-09 Score=111.43 Aligned_cols=142 Identities=26% Similarity=0.379 Sum_probs=99.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhh-hchhHHHHHHHHHHHHhhCCceEEecccccccccccCC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 273 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~-~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~ 273 (419)
-.++||+||||+|||.||-.+|...+.||+.+-..+-+-.+ -...-..+..+|+.|.+.+-+||++|+|+.|..=-
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v--- 614 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV--- 614 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc---
Confidence 35699999999999999999999999999998665433221 11223468899999999999999999999986321
Q ss_pred CCCCCCHHHHHHHHHH-HHHccccccCC-CeEEEEEeCCcchhhH-HhcCCCceeEEEEcCCCCH-HHHHHHHHH
Q 014743 274 GSGNGDSEVQRTMLEL-LNQLDGFEASN-KIKVLMATNRIDILDQ-ALLRPGRIDRKIEFPNPNE-ESRLDILKI 344 (419)
Q Consensus 274 ~~~~~~~~~~~~l~~l-L~~l~~~~~~~-~v~VI~tTn~~~~ld~-allr~gRfd~~I~~~~P~~-~~r~~Il~~ 344 (419)
.--|...+.++|. +-.+....+.+ +.+|++||++.+.+.. .++. .|+..|.+|..+. ++..+++..
T Consensus 615 ---pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 615 ---PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ---ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 1223444555443 33443333333 5777777877776655 3556 8999999998765 666666653
No 202
>PRK08116 hypothetical protein; Validated
Probab=99.07 E-value=2e-09 Score=104.39 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=79.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhch----hHHHHHHHHHHHHhhCCceEEecccccc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGE----GSRMVRELFVMAREHAPSIIFMDEIDSI 266 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~----~~~~i~~lf~~a~~~~psVl~iDEiD~l 266 (419)
.+.+++|+||||||||+||.++|+++ +.+++.++.++++..+... .......+++.. ....+|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCC
Confidence 34679999999999999999999975 6778888888876654221 111122333332 24569999998551
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc-ch----hhHHhcCCCce---eEEEEcCCCCH
Q 014743 267 GSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI-DI----LDQALLRPGRI---DRKIEFPNPNE 335 (419)
Q Consensus 267 ~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~-~~----ld~allr~gRf---d~~I~~~~P~~ 335 (419)
......+..+.++++..- ..+..+|+|||.+ +. ++..+.+ |+ ...|.|+.||.
T Consensus 191 ----------~~t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 ----------RDTEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ----------CCCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 123445667777777641 2345578888865 33 3445555 54 34567776664
No 203
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.07 E-value=3.5e-09 Score=111.18 Aligned_cols=211 Identities=17% Similarity=0.250 Sum_probs=126.7
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEe
Q 014743 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 227 (419)
Q Consensus 148 ~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~ 227 (419)
...|++++.+.+.+++.-...-+++|+.++...+ .+-.+.+-+||+||||||||+++++||++++..+....
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 3458889999999999999999999999997532 12234456778999999999999999999887666542
Q ss_pred -Ccchh------hhhhchh---H---HH---HHHH-HHHHHh-----------hCCceEEecccccccccccCCCCCCCC
Q 014743 228 -GSELV------QKYIGEG---S---RM---VREL-FVMARE-----------HAPSIIFMDEIDSIGSARMESGSGNGD 279 (419)
Q Consensus 228 -~s~l~------~~~~g~~---~---~~---i~~l-f~~a~~-----------~~psVl~iDEiD~l~~~r~~~~~~~~~ 279 (419)
...+. ..|.+.. . .. ...+ +..++. ..+.||+++|+-.++... .
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~- 149 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------T- 149 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------H-
Confidence 22210 1111110 0 01 1111 111111 246799999987654321 1
Q ss_pred HHHHHHHHHHHHHccccccCC-CeEEEEE-e------CCc--------chhhHHhcCCCceeEEEEcCCCCHHHHHHHHH
Q 014743 280 SEVQRTMLELLNQLDGFEASN-KIKVLMA-T------NRI--------DILDQALLRPGRIDRKIEFPNPNEESRLDILK 343 (419)
Q Consensus 280 ~~~~~~l~~lL~~l~~~~~~~-~v~VI~t-T------n~~--------~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~ 343 (419)
..+...|.+++..- .. .++||+| + |.. ..+++.++...++. .|.|.+-...-..+-|.
T Consensus 150 ~~f~~~L~~~l~~~-----~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~ 223 (519)
T PF03215_consen 150 SRFREALRQYLRSS-----RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALK 223 (519)
T ss_pred HHHHHHHHHHHHcC-----CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHH
Confidence 34555555555432 22 6777777 1 111 14667777644554 68898888765555554
Q ss_pred HHHhhc--------ccCCCCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 014743 344 IHSRRM--------NLMRGID-LKKIAEKMNGASGAELKAVCTEAGMFAL 384 (419)
Q Consensus 344 ~~~~~~--------~~~~~~d-l~~la~~t~G~sgadi~~l~~~A~~~a~ 384 (419)
..+..- ....... ++.|+..+.| ||+..+..--+.+.
T Consensus 224 rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 224 RILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 433321 1111122 6677777655 99988876555555
No 204
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.05 E-value=1.2e-08 Score=97.47 Aligned_cols=133 Identities=24% Similarity=0.238 Sum_probs=89.2
Q ss_pred CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc-------------chhhHHhcC
Q 014743 254 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI-------------DILDQALLR 320 (419)
Q Consensus 254 ~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~-------------~~ld~allr 320 (419)
-|.|+||||++- .|-+.+..|...|. +.-.-+||++||+. .-+++.++.
T Consensus 296 vPGVLFIDEVhM------------LDiEcFTyL~kalE------S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHM------------LDIECFTYLHKALE------SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred cCcceEeeehhh------------hhhHHHHHHHHHhc------CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh
Confidence 488999999877 45566666665553 22245688888874 356677776
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 321 PGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 321 ~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
|+- +|..-+++.++.++|+++....-++. .+.-+..++.....-|-+-...|+.-|...|-..++..+..+|++++
T Consensus 358 --Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 358 --RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred --hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 663 45556778888888998876554432 22235556665555555666667777778887778889999999988
Q ss_pred HHHHHhhh
Q 014743 400 VAKVMKKE 407 (419)
Q Consensus 400 l~~v~~~~ 407 (419)
-.-.+...
T Consensus 435 ~~Lf~Dak 442 (456)
T KOG1942|consen 435 TELFLDAK 442 (456)
T ss_pred HHHHHhch
Confidence 77666444
No 205
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.03 E-value=6.5e-09 Score=96.95 Aligned_cols=178 Identities=20% Similarity=0.403 Sum_probs=100.6
Q ss_pred cCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC---ceEEEeC-cchh----hhh
Q 014743 164 GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---TFIRVSG-SELV----QKY 235 (419)
Q Consensus 164 ~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~---~~i~v~~-s~l~----~~~ 235 (419)
.|.++.++.|.+.+.. .+...++++||.|+|||+|++.+...... ..+.+.. .... ...
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 5778888888887754 35678999999999999999999987622 1112211 1000 000
Q ss_pred -------------h-----------------chhHHHHHHHHHHHHhh-CCceEEeccccccc-ccccCCCCCCCCHHHH
Q 014743 236 -------------I-----------------GEGSRMVRELFVMAREH-APSIIFMDEIDSIG-SARMESGSGNGDSEVQ 283 (419)
Q Consensus 236 -------------~-----------------g~~~~~i~~lf~~a~~~-~psVl~iDEiD~l~-~~r~~~~~~~~~~~~~ 283 (419)
. ......+..+++..... ...||+|||++.+. ..+ ......
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-------~~~~~~ 141 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-------EDKDFL 141 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-------TTHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-------chHHHH
Confidence 0 11233455666655543 34799999999987 211 234555
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhhH------HhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc-c-CCCC
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILDQ------ALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN-L-MRGI 355 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~------allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~-~-~~~~ 355 (419)
..+..+++.. ....++.+|+++........ .+. +|+.. +.+++.+.++..+++........ + .++.
T Consensus 142 ~~l~~~~~~~---~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~ 215 (234)
T PF01637_consen 142 KSLRSLLDSL---LSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDE 215 (234)
T ss_dssp HHHHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HH
T ss_pred HHHHHHHhhc---cccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHH
Confidence 5555555542 23456766666665443333 222 37777 99999999999999998776551 1 2455
Q ss_pred CHHHHHHHcCCC
Q 014743 356 DLKKIAEKMNGA 367 (419)
Q Consensus 356 dl~~la~~t~G~ 367 (419)
+++.+...|.|+
T Consensus 216 ~~~~i~~~~gG~ 227 (234)
T PF01637_consen 216 DIEEIYSLTGGN 227 (234)
T ss_dssp HHHHHHHHHTT-
T ss_pred HHHHHHHHhCCC
Confidence 677888888884
No 206
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.02 E-value=5.5e-09 Score=114.07 Aligned_cols=198 Identities=22% Similarity=0.309 Sum_probs=122.8
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh
Q 014743 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK 234 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~ 234 (419)
..|++++|....++.+.+.+... ......|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 56788999999999998887652 1345679999999999999999998754 678999999865322
Q ss_pred -----hhchhHH-------HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc------
Q 014743 235 -----YIGEGSR-------MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF------ 296 (419)
Q Consensus 235 -----~~g~~~~-------~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~------ 296 (419)
.+|...+ .....|+.| ...+||||||+.+ +...+..+..+|+...-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L------------~~~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM------------PLELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC------------CHHHHHHHHHHHHhCCEEeCCCCC
Confidence 2232110 011233333 3569999999994 567888888888763210
Q ss_pred ccCCCeEEEEEeCCcc-------hhhHHhcCCCcee-EEEEcCCCCH--HHHHHHHHHHHhhccc----C-CCCC---HH
Q 014743 297 EASNKIKVLMATNRID-------ILDQALLRPGRID-RKIEFPNPNE--ESRLDILKIHSRRMNL----M-RGID---LK 358 (419)
Q Consensus 297 ~~~~~v~VI~tTn~~~-------~ld~allr~gRfd-~~I~~~~P~~--~~r~~Il~~~~~~~~~----~-~~~d---l~ 358 (419)
....++.||++|+..- .+...+.. |+. ..|.+|+... ++...+++.++.++.. . ..+. +.
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 0123678999987641 12223333 332 3456665532 3444455555544321 1 1123 33
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Q 014743 359 KIAEKMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 359 ~la~~t~G~sgadi~~l~~~A~~~a 383 (419)
.|.....--+-++|++++++|...+
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 3444433446699999999988654
No 207
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.01 E-value=2.1e-09 Score=103.90 Aligned_cols=163 Identities=20% Similarity=0.260 Sum_probs=111.7
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc-----
Q 014743 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT----- 222 (419)
Q Consensus 148 ~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~----- 222 (419)
...|++++++....+++++++.+..+.+++..+ ..| +.|+|||||||||+...+.|..+.++
T Consensus 28 ~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~------------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~ 94 (360)
T KOG0990|consen 28 PQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMP------------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTS 94 (360)
T ss_pred CCCCccCCCCchhhhHhcCCchhhHHHHhccCC------------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCchh
Confidence 455888999999999999999999999986553 222 89999999999999999999987553
Q ss_pred -eEEEeCcchhhhhhchhHHHHHHHHHHHHh-------hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcc
Q 014743 223 -FIRVSGSELVQKYIGEGSRMVRELFVMARE-------HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD 294 (419)
Q Consensus 223 -~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~-------~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~ 294 (419)
+..++.|+-.. ++ ..+.-...|..++. ..+..|++||.|+. ..+.++.+.+.+...
T Consensus 95 m~lelnaSd~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM------------T~~AQnALRRviek~- 158 (360)
T KOG0990|consen 95 MLLELNASDDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM------------TRDAQNALRRVIEKY- 158 (360)
T ss_pred HHHHhhccCccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHh------------hHHHHHHHHHHHHHh-
Confidence 11112221110 11 12223356666653 36789999999994 244566666655443
Q ss_pred ccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHH
Q 014743 295 GFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHS 346 (419)
Q Consensus 295 ~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~ 346 (419)
..++.++..+|.+..+.|+++. ||.+ ..|.+.+......++..+.
T Consensus 159 ----t~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~ 203 (360)
T KOG0990|consen 159 ----TANTRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIR 203 (360)
T ss_pred ----ccceEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHH
Confidence 4577888999999999999987 6653 4456666555555554443
No 208
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=3.8e-09 Score=108.72 Aligned_cols=197 Identities=22% Similarity=0.298 Sum_probs=122.0
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh-
Q 014743 157 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV- 232 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~- 232 (419)
..+|++|+|...+...+.+.+... ...+..||++|.+||||..+|++|-+.. +.||+.+||..+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 467899999998888887776542 2567889999999999999999998754 7899999997542
Q ss_pred ----hhhhchhHHH--------HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc----
Q 014743 233 ----QKYIGEGSRM--------VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF---- 296 (419)
Q Consensus 233 ----~~~~g~~~~~--------i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~---- 296 (419)
+..+|+..+. -.-+|+.|... -||+|||-. .....|..|+.+|++-.-.
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIge------------mpl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGE------------MPLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhcc------------CCHHHHHHHHHHHhhceEEecCC
Confidence 2233432221 23455555443 799999876 4467888888888763211
Q ss_pred --ccCCCeEEEEEeCCcchhhHHhcCCCceeE-------EEEcCCCCH----HHHHHHHHHHHhhc----cc-CCCCC--
Q 014743 297 --EASNKIKVLMATNRIDILDQALLRPGRIDR-------KIEFPNPNE----ESRLDILKIHSRRM----NL-MRGID-- 356 (419)
Q Consensus 297 --~~~~~v~VI~tTn~~~~ld~allr~gRfd~-------~I~~~~P~~----~~r~~Il~~~~~~~----~~-~~~~d-- 356 (419)
...-+|.||+|||+. + ..+...|+|-. ++.+..|.- ++...+...++.++ +- ...+.
T Consensus 375 t~~~~vDVRIIAATN~n--L-~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRN--L-EKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcC--H-HHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 112379999999973 1 12233444421 334444433 33333344444432 21 11222
Q ss_pred -HHHHHHHcCCCCHHHHHHHHHHHHHH
Q 014743 357 -LKKIAEKMNGASGAELKAVCTEAGMF 382 (419)
Q Consensus 357 -l~~la~~t~G~sgadi~~l~~~A~~~ 382 (419)
+..|.....-=+-++|++++.++...
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~ 478 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNL 478 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhc
Confidence 22333332222569999999998863
No 209
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=1.4e-08 Score=100.85 Aligned_cols=144 Identities=19% Similarity=0.308 Sum_probs=99.4
Q ss_pred cHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc-----------------------
Q 014743 166 LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT----------------------- 222 (419)
Q Consensus 166 ~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~----------------------- 222 (419)
+....+.+...+... ..|..+||+||+|+||+++|+++|..+-|.
T Consensus 7 ~~~~~~~l~~~~~~~------------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 7 LQPTYQQITQAFQQG------------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 345566666666542 456789999999999999999999855321
Q ss_pred -eEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc
Q 014743 223 -FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297 (419)
Q Consensus 223 -~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~ 297 (419)
++.+...+ ++.+ +-..+|++.+.+.. ....|++||++|++ ..+..+.|+..|.+
T Consensus 75 D~~~i~p~~--~~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m------------~~~AaNaLLKtLEE----- 133 (325)
T PRK06871 75 DFHILEPID--NKDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERL------------TEAAANALLKTLEE----- 133 (325)
T ss_pred CEEEEcccc--CCCC--CHHHHHHHHHHHhhccccCCceEEEEechhhh------------CHHHHHHHHHHhcC-----
Confidence 22221110 1111 23345665555433 34579999999994 45566777776654
Q ss_pred cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHH
Q 014743 298 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH 345 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~ 345 (419)
+..++++|++|+.++.+.|.+++ |.- .+.|++|+.++..+.|...
T Consensus 134 Pp~~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 134 PRPNTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCeEEEEEECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988 764 6889999998887777643
No 210
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.99 E-value=4.7e-09 Score=107.70 Aligned_cols=196 Identities=21% Similarity=0.309 Sum_probs=124.5
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh--
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ-- 233 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~-- 233 (419)
.+.+++|...+.+++.+.|..- ......||++|++||||-++||+|-... +.||+.|||..+-.
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4578999999999999988652 1345679999999999999999998755 67999999975532
Q ss_pred ---hhhchhHHH----H---HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc--ccc---
Q 014743 234 ---KYIGEGSRM----V---RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG--FEA--- 298 (419)
Q Consensus 234 ---~~~g~~~~~----i---~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~--~~~--- 298 (419)
..+|+..+. . .-.|+.|.. ..||||||.. ...+.|..|+.+|.+-.- ...
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~------------mpl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGE------------MPLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeecccc------------CCHHHHHHHHHHHHcCeeEecCCCcc
Confidence 234432221 1 124555533 4899999977 456788888888876431 111
Q ss_pred -CCCeEEEEEeCCcc-------hhhHHhcCCCceeEEEEcCCCCHHHH----HHHHHHHHhhccc-----CCCCCHHHHH
Q 014743 299 -SNKIKVLMATNRID-------ILDQALLRPGRIDRKIEFPNPNEESR----LDILKIHSRRMNL-----MRGIDLKKIA 361 (419)
Q Consensus 299 -~~~v~VI~tTn~~~-------~ld~allr~gRfd~~I~~~~P~~~~r----~~Il~~~~~~~~~-----~~~~dl~~la 361 (419)
+-+|.||++||+.= .+...|.- |+. ++.+..|.-.+| --++.+++++... ...++-..++
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~ 349 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALA 349 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 12688999999631 12223322 332 444555544333 3345555554322 2344445554
Q ss_pred HHcC-CC--CHHHHHHHHHHHHHHH
Q 014743 362 EKMN-GA--SGAELKAVCTEAGMFA 383 (419)
Q Consensus 362 ~~t~-G~--sgadi~~l~~~A~~~a 383 (419)
..+. .| +-++|++++.+++..+
T Consensus 350 ~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 350 ALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred HHHhCCCChHHHHHHHHHHHHHhcC
Confidence 4432 33 4489999999887766
No 211
>PRK12377 putative replication protein; Provisional
Probab=98.98 E-value=4.5e-09 Score=100.57 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhchh--HHHHHHHHHHHHhhCCceEEeccccccccc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEG--SRMVRELFVMAREHAPSIIFMDEIDSIGSA 269 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~~--~~~i~~lf~~a~~~~psVl~iDEiD~l~~~ 269 (419)
..+++|+||||||||+||.++|+.+ +..++.+...+++...-..- ......++... ....+|+|||+....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 4689999999999999999999976 56677777777766432110 00111233322 456799999987631
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 270 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 270 r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
.......++.++++.-- .+...+|+|||..
T Consensus 177 --------~s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 177 --------ETKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred --------CCHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 23345667888887642 2345578899964
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1e-08 Score=102.38 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc------------------------
Q 014743 167 DQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT------------------------ 222 (419)
Q Consensus 167 ~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~------------------------ 222 (419)
+...+++.+.+... +.|..+||+||+|+||+++|.++|..+-|.
T Consensus 8 ~~~~~~l~~~~~~~------------rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (334)
T PRK07993 8 RPDYEQLVGSYQAG------------RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_pred hHHHHHHHHHHHcC------------CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 44555666655442 567789999999999999999999855221
Q ss_pred eEEEeCcchhhhhhchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc
Q 014743 223 FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA 298 (419)
Q Consensus 223 ~i~v~~s~l~~~~~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~ 298 (419)
+..+....- ... -.-..+|++.+.+. .....|++||++|++ ..+..+.|+..|.+ +
T Consensus 76 ~~~i~p~~~-~~~--I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m------------~~~AaNaLLKtLEE-----P 135 (334)
T PRK07993 76 YYTLTPEKG-KSS--LGVDAVREVTEKLYEHARLGGAKVVWLPDAALL------------TDAAANALLKTLEE-----P 135 (334)
T ss_pred EEEEecccc-ccc--CCHHHHHHHHHHHhhccccCCceEEEEcchHhh------------CHHHHHHHHHHhcC-----C
Confidence 222211100 000 11234555555443 345679999999994 45566777776654 5
Q ss_pred CCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHH
Q 014743 299 SNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKI 344 (419)
Q Consensus 299 ~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~ 344 (419)
..++++|++|+.++.+.|.+++ |.- .+.|++|+.++....|..
T Consensus 136 p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 136 PENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred CCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 6789999999999999999998 776 579999998887776643
No 213
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=4.1e-09 Score=105.25 Aligned_cols=132 Identities=22% Similarity=0.297 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCce-------------------------EEEeCcchh---------------
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTF-------------------------IRVSGSELV--------------- 232 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~~-------------------------i~v~~s~l~--------------- 232 (419)
+.|..+||+||+|+||+++|+.+|..+.|.. ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5678999999999999999999998654321 111111000
Q ss_pred ---hh----h-hchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCC
Q 014743 233 ---QK----Y-IGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 300 (419)
Q Consensus 233 ---~~----~-~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~ 300 (419)
++ . -.-.-..+|++.+.+. .....|++||++|++ ..+..+.|+..|.+ ...
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m------------~~~AaNaLLKtLEE-----Pp~ 161 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL------------NVAAANALLKTLEE-----PPP 161 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc------------CHHHHHHHHHHhcC-----CCc
Confidence 00 0 0011234556555443 234569999999994 45566767766653 567
Q ss_pred CeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHH
Q 014743 301 KIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKI 344 (419)
Q Consensus 301 ~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~ 344 (419)
++++|++|++++.+.|.+++ |+ ..+.|++|+.++..+.|..
T Consensus 162 ~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 162 GTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 89999999999999999998 87 5899999999988888764
No 214
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.95 E-value=1.7e-08 Score=101.40 Aligned_cols=219 Identities=23% Similarity=0.300 Sum_probs=132.0
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeC---------
Q 014743 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG--------- 228 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~--------- 228 (419)
..|.-++|++..+..|--....| .-.++|+.|+.||||||++|+||.-+..-.+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 34578999998888776543332 44789999999999999999999865322111122
Q ss_pred ----cc-------------------hhhhhhchhHHH-H-----HHHHH----------HHHhhCCceEEeccccccccc
Q 014743 229 ----SE-------------------LVQKYIGEGSRM-V-----RELFV----------MAREHAPSIIFMDEIDSIGSA 269 (419)
Q Consensus 229 ----s~-------------------l~~~~~g~~~~~-i-----~~lf~----------~a~~~~psVl~iDEiD~l~~~ 269 (419)
.+ ++..-.|.++.. + ....+ .|+. .-.|+++||+..
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnl---- 155 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNL---- 155 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEecccc----
Confidence 00 111111222221 1 11111 0111 234999999877
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHc------ccc--ccCCCeEEEEEeCCc-chhhHHhcCCCceeEEEEcCCC-CHHHHH
Q 014743 270 RMESGSGNGDSEVQRTMLELLNQL------DGF--EASNKIKVLMATNRI-DILDQALLRPGRIDRKIEFPNP-NEESRL 339 (419)
Q Consensus 270 r~~~~~~~~~~~~~~~l~~lL~~l------~~~--~~~~~v~VI~tTn~~-~~ld~allr~gRfd~~I~~~~P-~~~~r~ 339 (419)
.+..++..|+..+.+. +|+ ...-++++|+|+|.- ..|.|-|+. ||...|.+..| +.++|.
T Consensus 156 --------L~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv 225 (423)
T COG1239 156 --------LDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERV 225 (423)
T ss_pred --------ccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHH
Confidence 4567888888888764 122 223478899999964 378889998 99999998877 678899
Q ss_pred HHHHHHHhh-------------------------cccCCCCC-----HHHHHHHcC--CCC--HHHHHHHHHHHHHHHHH
Q 014743 340 DILKIHSRR-------------------------MNLMRGID-----LKKIAEKMN--GAS--GAELKAVCTEAGMFALR 385 (419)
Q Consensus 340 ~Il~~~~~~-------------------------~~~~~~~d-----l~~la~~t~--G~s--gadi~~l~~~A~~~a~~ 385 (419)
+|++....- ....+.+. ...++..+. +.. -+|+. +.+.|...|.-
T Consensus 226 ~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~-~~r~a~a~aa~ 304 (423)
T COG1239 226 EIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIV-VVRAAKALAAL 304 (423)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhH-HHHHHHHHHHh
Confidence 888754321 01111111 111222211 111 23433 33444455556
Q ss_pred hcCCCCCHHHHHHHHHHHHh
Q 014743 386 ERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 386 ~~~~~vt~eD~~~Al~~v~~ 405 (419)
.++..|+.+|+..|..-.++
T Consensus 305 ~Gr~~v~~~Di~~a~~l~l~ 324 (423)
T COG1239 305 RGRTEVEEEDIREAAELALL 324 (423)
T ss_pred cCceeeehhhHHHHHhhhhh
Confidence 78889999999999887765
No 215
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.95 E-value=7.8e-09 Score=92.72 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=80.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh--------hhhhch---hHH--HHHHHHHHHHhhC
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------QKYIGE---GSR--MVRELFVMAREHA 254 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~--------~~~~g~---~~~--~i~~lf~~a~~~~ 254 (419)
+.+.++..+.|.||+|+|||||++.|++.. ...-+.+++.++. ...++. ..+ ..+-.+..|....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 456788899999999999999999999864 3445556554321 111222 222 2334556667788
Q ss_pred CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 255 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 255 psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|.|+++|| |+++.|......+.+++.++. ..+..||++||+.+.+..
T Consensus 101 p~illlDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 101 ARLLILDE-----------PTAALTPAEVERLFKVIRRLR----AQGVAVIFISHRLDEVFE 147 (163)
T ss_pred CCEEEEEC-----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 99999999 667789999999999998773 236778899999876543
No 216
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=2e-08 Score=99.38 Aligned_cols=168 Identities=19% Similarity=0.248 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc---------------------eE
Q 014743 166 LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---------------------FI 224 (419)
Q Consensus 166 ~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~---------------------~i 224 (419)
+..+.+.+...+... +-|..+||+||+|+||+++|.++|..+-|. +.
T Consensus 9 ~~~~~~~l~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDAG------------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 455667777776542 457789999999999999999999754221 11
Q ss_pred EEe--Ccchhhh-hhchhHHHHHHHHHHHHhh----CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc
Q 014743 225 RVS--GSELVQK-YIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297 (419)
Q Consensus 225 ~v~--~s~l~~~-~~g~~~~~i~~lf~~a~~~----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~ 297 (419)
.+. ..+--.+ ...-.-..+|++.+.+... ...|++||++|.+ .....+.|+..|.+
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m------------~~~AaNaLLKtLEE----- 139 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI------------NRAACNALLKTLEE----- 139 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh------------CHHHHHHHHHHhhC-----
Confidence 121 0000000 0001123456666555433 3469999999995 45566777777665
Q ss_pred cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHH
Q 014743 298 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGA 370 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sga 370 (419)
...++++|++|+.++.+.|.+++ |+- .+.|++|+.++-...|... ... ..+...++..+.|.-+.
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGL 204 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHH
Confidence 45688999999999999999998 774 6889999998877666532 111 11233556666664443
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.94 E-value=8.1e-09 Score=98.56 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=67.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhch---hHHHHHHHHHHHHhhCCceEEeccccccccc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGE---GSRMVRELFVMAREHAPSIIFMDEIDSIGSA 269 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~---~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~ 269 (419)
.+++|+||||||||+|+.++|.++ +..++.++.++++....+. .......+++.. ..+++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCCC--
Confidence 589999999999999999999976 6678888888877654322 111222344433 257899999998742
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 270 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 270 r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
.......++.++++.- ..++..+|+|||..
T Consensus 176 --------~s~~~~~~l~~Ii~~R----y~~~~~tiitSNl~ 205 (244)
T PRK07952 176 --------ESRYEKVIINQIVDRR----SSSKRPTGMLTNSN 205 (244)
T ss_pred --------CCHHHHHHHHHHHHHH----HhCCCCEEEeCCCC
Confidence 2223345677787653 22345678899864
No 218
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.93 E-value=9.9e-09 Score=96.22 Aligned_cols=122 Identities=29% Similarity=0.394 Sum_probs=83.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhc--cCCceEEEeCcch-----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL----------------------------------- 231 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~--~~~~~i~v~~s~l----------------------------------- 231 (419)
++.+.++..+.+.||+|||||||...++.- .....+.+++.++
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv 104 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHH
Confidence 345678888999999999999999999862 2333444443211
Q ss_pred ------------------------------hh-hhhchhHHHHHH--HHHHHHhhCCceEEecccccccccccCCCCCCC
Q 014743 232 ------------------------------VQ-KYIGEGSRMVRE--LFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 278 (419)
Q Consensus 232 ------------------------------~~-~~~g~~~~~i~~--lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~ 278 (419)
.. +++.+.++.-++ .+..|..+.|.|||.|| |++..
T Consensus 105 ~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE-----------PTgnL 173 (226)
T COG1136 105 ELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE-----------PTGNL 173 (226)
T ss_pred HhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC-----------ccccC
Confidence 00 123333333333 34445568899999999 88889
Q ss_pred CHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcC
Q 014743 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331 (419)
Q Consensus 279 ~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~ 331 (419)
|......++.++.++. ...+.+||+.||++... . +.|++|++.
T Consensus 174 D~~t~~~V~~ll~~~~---~~~g~tii~VTHd~~lA-----~--~~dr~i~l~ 216 (226)
T COG1136 174 DSKTAKEVLELLRELN---KERGKTIIMVTHDPELA-----K--YADRVIELK 216 (226)
T ss_pred ChHHHHHHHHHHHHHH---HhcCCEEEEEcCCHHHH-----H--hCCEEEEEe
Confidence 9999999999998873 34578899999976543 3 556666653
No 219
>PRK08181 transposase; Validated
Probab=98.93 E-value=6.1e-09 Score=100.82 Aligned_cols=101 Identities=21% Similarity=0.352 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhch-hHHHHHHHHHHHHhhCCceEEeccccccccc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSA 269 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~-~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~ 269 (419)
.+.+++|+||||||||+|+.+++.++ +..++.++..+++..+... ......+.+... ..+.+|+|||+..+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~-- 180 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT-- 180 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc--
Confidence 45689999999999999999999754 6677888888887754221 112223333332 356799999998742
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 270 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 270 r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
.+......+.++++.... +.-+|+|||.+
T Consensus 181 --------~~~~~~~~Lf~lin~R~~-----~~s~IiTSN~~ 209 (269)
T PRK08181 181 --------KDQAETSVLFELISARYE-----RRSILITANQP 209 (269)
T ss_pred --------CCHHHHHHHHHHHHHHHh-----CCCEEEEcCCC
Confidence 234556788888886521 12478888875
No 220
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.92 E-value=8.4e-09 Score=95.06 Aligned_cols=108 Identities=22% Similarity=0.423 Sum_probs=79.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHh--ccCCceEEEeCcch-------------------------------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSEL------------------------------------- 231 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~--~~~~~~i~v~~s~l------------------------------------- 231 (419)
.+..+.-+.+.||+|||||||.|+|.. ..+..-+.+++..+
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 456778899999999999999999986 34556666665211
Q ss_pred --------------------------hhhhhchhHHHHHH--HHHHHHhhCCceEEecccccccccccCCCCCCCCHHHH
Q 014743 232 --------------------------VQKYIGEGSRMVRE--LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 232 --------------------------~~~~~g~~~~~i~~--lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
...|+...+++.++ .+.+|....|.|++||| +++..||+..
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE-----------PTSALDPElv 172 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE-----------PTSALDPELV 172 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC-----------CcccCCHHHH
Confidence 11255554444444 44445567899999999 7788999999
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
..++.++.++ ...+.+.|+.||...-
T Consensus 173 ~EVL~vm~~L----A~eGmTMivVTHEM~F 198 (240)
T COG1126 173 GEVLDVMKDL----AEEGMTMIIVTHEMGF 198 (240)
T ss_pred HHHHHHHHHH----HHcCCeEEEEechhHH
Confidence 9888888887 4566888889987653
No 221
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.1e-07 Score=94.29 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=99.9
Q ss_pred cHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC-----------------------c
Q 014743 166 LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-----------------------T 222 (419)
Q Consensus 166 ~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~-----------------------~ 222 (419)
+....+.+...+... +.|..+||+||.|+||+++|+++|..+-+ .
T Consensus 8 l~~~~~~l~~~~~~~------------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 8 LVPVWQNWKAGLDAG------------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred HHHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 455666777766542 56778999999999999999999975422 1
Q ss_pred eEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc
Q 014743 223 FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA 298 (419)
Q Consensus 223 ~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~ 298 (419)
++.+.... .++.+ .-..+|++.+.+.. ....|++||++|.+ ..+..+.++..|.+ +
T Consensus 76 ~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m------------~~~AaNaLLKtLEE-----P 135 (319)
T PRK06090 76 LHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAM------------NESASNALLKTLEE-----P 135 (319)
T ss_pred EEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhh------------CHHHHHHHHHHhcC-----C
Confidence 22222110 00111 12345555554433 34679999999994 35566777777664 4
Q ss_pred CCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHH
Q 014743 299 SNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKI 344 (419)
Q Consensus 299 ~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~ 344 (419)
..++++|++|+.++.+.|.+++ |.- .+.|++|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 6789999999999999999988 774 789999999888777653
No 222
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.90 E-value=8.8e-08 Score=91.99 Aligned_cols=134 Identities=22% Similarity=0.224 Sum_probs=90.6
Q ss_pred CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc------------chhhHHhcCCC
Q 014743 255 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI------------DILDQALLRPG 322 (419)
Q Consensus 255 psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~------------~~ld~allr~g 322 (419)
|.||||||++- .|-+.+..++..|. ..-.-++|++||+. .-+|-.|+.
T Consensus 289 pGVLFIDEvHM------------LDIEcFsFlNrAlE------~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD-- 348 (454)
T KOG2680|consen 289 PGVLFIDEVHM------------LDIECFSFLNRALE------NDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD-- 348 (454)
T ss_pred cceEEEeeehh------------hhhHHHHHHHHHhh------hccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--
Confidence 67777777665 34445554544442 12234578888874 355666665
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHHHhhcccCCC-CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014743 323 RIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 323 Rfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
|. -+|.-.+++.++..+||++....-.+.-+ -.+..|......-|-+---.|+..|.+.|.++....+..+|+..+++
T Consensus 349 R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 349 RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYR 427 (454)
T ss_pred hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHH
Confidence 54 25677788999999999988764333211 12444555555556666678888899999999999999999999999
Q ss_pred HHHhhhhc
Q 014743 402 KVMKKETE 409 (419)
Q Consensus 402 ~v~~~~~~ 409 (419)
-.+....+
T Consensus 428 LFlD~~Rs 435 (454)
T KOG2680|consen 428 LFLDEKRS 435 (454)
T ss_pred HHhhhhhh
Confidence 88876554
No 223
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.90 E-value=7.9e-08 Score=91.45 Aligned_cols=221 Identities=17% Similarity=0.268 Sum_probs=137.1
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-C--CceEEE
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-D--CTFIRV 226 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-~--~~~i~v 226 (419)
.|++++.+..++.+.+.++....+...... ..-.++|+|||+|+||-|.+-++-+++ | ..-.++
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki 68 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI 68 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee
Confidence 467788888899999999888888876542 223579999999999999999998865 2 111111
Q ss_pred eCcch-------------hhh--------hhch-hHHHHHHHHHHHHh---------hCCceEEecccccccccccCCCC
Q 014743 227 SGSEL-------------VQK--------YIGE-GSRMVRELFVMARE---------HAPSIIFMDEIDSIGSARMESGS 275 (419)
Q Consensus 227 ~~s~l-------------~~~--------~~g~-~~~~i~~lf~~a~~---------~~psVl~iDEiD~l~~~r~~~~~ 275 (419)
....+ .+. -.|. ..-.+++++....+ ....||+|-|+|.|.
T Consensus 69 ~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-------- 140 (351)
T KOG2035|consen 69 ETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-------- 140 (351)
T ss_pred eeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh--------
Confidence 11111 011 1122 22234555544433 235699999999963
Q ss_pred CCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CC
Q 014743 276 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RG 354 (419)
Q Consensus 276 ~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~ 354 (419)
.+.+..+-.-+... .+++.+|+.+|..+.+-+.+.+ |. -.|.+|.|+.++...++...+.+-++. +.
T Consensus 141 ----~dAQ~aLRRTMEkY-----s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~ 208 (351)
T KOG2035|consen 141 ----RDAQHALRRTMEKY-----SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPK 208 (351)
T ss_pred ----HHHHHHHHHHHHHH-----hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcH
Confidence 23333333333332 4678899999999999999987 54 368999999999999998877665442 23
Q ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHH---HHHhcCCCCCHHHHHHHHHHHHh
Q 014743 355 IDLKKIAEKMNGASGAELKAVCTEAGMF---ALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 355 ~dl~~la~~t~G~sgadi~~l~~~A~~~---a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
.-+..+|+.++|.--+.|- +-+|... +...+...+-.-|.+.++.++..
T Consensus 209 ~~l~rIa~kS~~nLRrAll--mlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 209 ELLKRIAEKSNRNLRRALL--MLEAVRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred HHHHHHHHHhcccHHHHHH--HHHHHHhccccccccCCCCCCccHHHHHHHHHH
Confidence 3366788887774333321 1222211 11122244555566666665543
No 224
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.90 E-value=3.9e-08 Score=102.61 Aligned_cols=211 Identities=18% Similarity=0.265 Sum_probs=130.6
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhh
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKY 235 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~ 235 (419)
.+.+++|.....+.+.+.+... ......+++.|++|||||++|+++.... +.+|+.++|+.+-...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 3456788777777777666431 1345669999999999999999998865 5789999998763321
Q ss_pred -----hchhHHHH-------HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc------
Q 014743 236 -----IGEGSRMV-------RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE------ 297 (419)
Q Consensus 236 -----~g~~~~~i-------~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~------ 297 (419)
+|...+.. ...|+. .....|||||||.+ ....+..+.++++...-..
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l------------~~~~q~~L~~~l~~~~~~~~~~~~~ 269 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDM------------PLDVQTRLLRVLADGQFYRVGGYAP 269 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccC------------CHHHHHHHHHHHhcCcEEeCCCCCe
Confidence 22211100 011222 23458999999994 4677888888887542111
Q ss_pred cCCCeEEEEEeCCc-------chhhHHhcCCCce-eEEEEcCCCCH--HHHHHHHHHHHhhcccC-----CCCC---HHH
Q 014743 298 ASNKIKVLMATNRI-------DILDQALLRPGRI-DRKIEFPNPNE--ESRLDILKIHSRRMNLM-----RGID---LKK 359 (419)
Q Consensus 298 ~~~~v~VI~tTn~~-------~~ld~allr~gRf-d~~I~~~~P~~--~~r~~Il~~~~~~~~~~-----~~~d---l~~ 359 (419)
...++.||+||+.. ..+.+.|.. || ...|.+|+... ++...++..++...... ..+. +..
T Consensus 270 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 270 VKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 12357889988753 134456655 66 45677776643 45555666665543211 1122 333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 360 IAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 360 la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
|.....--+-++|+++++++...+ ....|+.+|+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 444444445699999999887655 45567778875444
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.89 E-value=1.9e-08 Score=100.06 Aligned_cols=122 Identities=19% Similarity=0.322 Sum_probs=76.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhch---hHHHHHHHHHHHHhhCCceEEecccccccc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGE---GSRMVRELFVMAREHAPSIIFMDEIDSIGS 268 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~---~~~~i~~lf~~a~~~~psVl~iDEiD~l~~ 268 (419)
..+++|+||||||||+|+.++|+++ +..++.++..+++...... ........++. .....+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e~- 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTEK- 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCCC-
Confidence 4789999999999999999999976 6678888888877654221 01111112222 2345799999987631
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc-chh----hHHhcCCCce---eEEEEcCCCC
Q 014743 269 ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI-DIL----DQALLRPGRI---DRKIEFPNPN 334 (419)
Q Consensus 269 ~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~-~~l----d~allr~gRf---d~~I~~~~P~ 334 (419)
..+.....+.++++..- ..+..+|+|||.+ +.+ ++.+.+ |+ -..+.|.-.|
T Consensus 260 ---------~t~~~~~~Lf~iin~R~----~~~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d 318 (329)
T PRK06835 260 ---------ITEFSKSELFNLINKRL----LRQKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGED 318 (329)
T ss_pred ---------CCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcC
Confidence 34556677788887642 1234477888863 333 344544 54 2245554444
No 226
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=9.2e-08 Score=96.76 Aligned_cols=224 Identities=20% Similarity=0.296 Sum_probs=149.9
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEeCcchh---
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELV--- 232 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~~s~l~--- 232 (419)
..+.|.+.....+++++..++. .+.++++.+.|-||||||.+..-+-... ....++++|..+-
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 5789999999999999987543 3677889999999999999988665433 2245888887532
Q ss_pred -------hhh----hchhH-HHHHHHHHHH-Hhh-CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc
Q 014743 233 -------QKY----IGEGS-RMVRELFVMA-REH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA 298 (419)
Q Consensus 233 -------~~~----~g~~~-~~i~~lf~~a-~~~-~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~ 298 (419)
+.+ .+.+. ......|+.- ... .+-|+++||+|.|+..+ +.++..+. +...+ .
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~------------~~vLy~lF-ewp~l-p 286 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS------------QTVLYTLF-EWPKL-P 286 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc------------cceeeeeh-hcccC-C
Confidence 112 12211 1222333322 222 36689999999997432 12233322 22222 3
Q ss_pred CCCeEEEEEeCCcchhhHHhcC----CCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCC--HHHHHHHcCCCCH--H
Q 014743 299 SNKIKVLMATNRIDILDQALLR----PGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID--LKKIAEKMNGASG--A 370 (419)
Q Consensus 299 ~~~v~VI~tTn~~~~ld~allr----~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~d--l~~la~~t~G~sg--a 370 (419)
...+++|+..|..+.-|..|.| -+.-...+.|++++.++..+||...+.........+ +.-.|....|.|| +
T Consensus 287 ~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlR 366 (529)
T KOG2227|consen 287 NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLR 366 (529)
T ss_pred cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHH
Confidence 4578899999998877765532 234467899999999999999999888776554444 5667888889888 3
Q ss_pred HHHHHHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHHhhh
Q 014743 371 ELKAVCTEAGMFALRERR----------------IHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 371 di~~l~~~A~~~a~~~~~----------------~~vt~eD~~~Al~~v~~~~ 407 (419)
..-.+|++|.-.+-.+.+ ..|..+++-.++.++....
T Consensus 367 kaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 344677877777665432 2355788888888876544
No 227
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.88 E-value=5.2e-08 Score=106.72 Aligned_cols=131 Identities=20% Similarity=0.273 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc-------CCceEEEeCcchhhhhhchhHHHH---HHHHHHHHhhCCceEEecc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSELVQKYIGEGSRMV---RELFVMAREHAPSIIFMDE 262 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~-------~~~~i~v~~s~l~~~~~g~~~~~i---~~lf~~a~~~~psVl~iDE 262 (419)
+...+|||.|+||||||++|++++... +.++..+++..... +.+...+.+ ...+..| ...+++|||
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDE 565 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDE 565 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEc---CCCeEEecc
Confidence 334579999999999999999998743 23444444443321 111000000 0011111 235999999
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHHcc------cc--ccCCCeEEEEEeCCcc-------------hhhHHhcCC
Q 014743 263 IDSIGSARMESGSGNGDSEVQRTMLELLNQLD------GF--EASNKIKVLMATNRID-------------ILDQALLRP 321 (419)
Q Consensus 263 iD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~------~~--~~~~~v~VI~tTn~~~-------------~ld~allr~ 321 (419)
+|++ ....+..|+++|.+-. |. .-..++.||+|+|... .+++.+++
T Consensus 566 idkm------------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS- 632 (915)
T PTZ00111 566 LDKC------------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT- 632 (915)
T ss_pred hhhC------------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh-
Confidence 9994 4667788888886532 11 1124788999999752 56789999
Q ss_pred CceeEEE-EcCCCCHHHHHHH
Q 014743 322 GRIDRKI-EFPNPNEESRLDI 341 (419)
Q Consensus 322 gRfd~~I-~~~~P~~~~r~~I 341 (419)
|||-+. .+..|+.+.=..|
T Consensus 633 -RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 633 -RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred -hhcEEEEecCCCChHHHHHH
Confidence 999764 4567776554444
No 228
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.88 E-value=2e-08 Score=90.85 Aligned_cols=59 Identities=24% Similarity=0.458 Sum_probs=48.3
Q ss_pred HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHH
Q 014743 244 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 317 (419)
Q Consensus 244 ~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~a 317 (419)
|-.++.|--+.|.||+-|| |+++.|++....+++++.++ +.-++.|++|||+.+.++..
T Consensus 145 RvaIARAiV~~P~vLlADE-----------PTGNLDp~~s~~im~lfeei----nr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 145 RVAIARAIVNQPAVLLADE-----------PTGNLDPDLSWEIMRLFEEI----NRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHccCCCeEeecC-----------CCCCCChHHHHHHHHHHHHH----hhcCcEEEEEeccHHHHHhc
Confidence 3444555568899999999 88889999999999999988 45688999999998877653
No 229
>PRK06526 transposase; Provisional
Probab=98.87 E-value=4.6e-09 Score=100.98 Aligned_cols=101 Identities=19% Similarity=0.324 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhch-hHHHHHHHHHHHHhhCCceEEeccccccccc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSA 269 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~-~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~ 269 (419)
.+.+++|+||||||||+|+.+|+.++ +..++.+..++++...... ..+.+...+.. ...+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~-- 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP-- 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC--
Confidence 46789999999999999999998864 5555566666665543211 11122222222 2457899999998752
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 270 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 270 r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
.+......+.++++.... +..+|+|||.+
T Consensus 173 --------~~~~~~~~L~~li~~r~~-----~~s~IitSn~~ 201 (254)
T PRK06526 173 --------FEPEAANLFFQLVSSRYE-----RASLIVTSNKP 201 (254)
T ss_pred --------CCHHHHHHHHHHHHHHHh-----cCCEEEEcCCC
Confidence 345666788888876421 12478888876
No 230
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2.3e-08 Score=99.45 Aligned_cols=131 Identities=22% Similarity=0.340 Sum_probs=91.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCC-------------------------ceEEEeCcch---hhhh-hchhHHHH
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDC-------------------------TFIRVSGSEL---VQKY-IGEGSRMV 243 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~-------------------------~~i~v~~s~l---~~~~-~g~~~~~i 243 (419)
+.|..+||+||+|+|||++|+.+|..+.| .|+.+....- -++. -.-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 56778999999999999999999986532 1333332100 0000 00123346
Q ss_pred HHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhc
Q 014743 244 RELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALL 319 (419)
Q Consensus 244 ~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~all 319 (419)
|++.+.+.. ....|+++|+++. .+...++.++.+|.+. ..++.+|++|+.++.+.+.+.
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~------------Ld~~a~naLLk~LEep-----~~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAES------------MNLQAANSLLKVLEEP-----PPQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhh------------CCHHHHHHHHHHHHhC-----cCCCEEEEEeCChHhChHHHH
Confidence 777766654 3356999998877 5677888888888775 245778889999999999988
Q ss_pred CCCceeEEEEcCCCCHHHHHHHHH
Q 014743 320 RPGRIDRKIEFPNPNEESRLDILK 343 (419)
Q Consensus 320 r~gRfd~~I~~~~P~~~~r~~Il~ 343 (419)
+ |+ ..+.|++|+.++..+.|.
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHH
Confidence 7 66 478899999988776664
No 231
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.85 E-value=9.8e-09 Score=89.39 Aligned_cols=126 Identities=26% Similarity=0.487 Sum_probs=82.3
Q ss_pred cCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC---CceEEEeCcchhhhhhchhH
Q 014743 164 GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSELVQKYIGEGS 240 (419)
Q Consensus 164 ~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~---~~~i~v~~s~l~~~~~g~~~ 240 (419)
+|....++.+++.+... ......|+|+|++||||+++|++|..... .+|+.++|..+-
T Consensus 1 vG~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 35566677777776542 03456799999999999999999998653 356666665532
Q ss_pred HHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc-c------h
Q 014743 241 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI-D------I 313 (419)
Q Consensus 241 ~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~-~------~ 313 (419)
.++++.+ ....|||+|+|.+ +.+.+..+.++|...+ ..++.+|++|..+ . .
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L------------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~l~~l~~~~~ 119 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRL------------SPEAQRRLLDLLKRQE----RSNVRLIASSSQDLEELVEEGR 119 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS-------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-CCCHHHHST
T ss_pred ---HHHHHHc---CCCEEEECChHHC------------CHHHHHHHHHHHHhcC----CCCeEEEEEeCCCHHHHhhccc
Confidence 3455544 5669999999994 5677888888887642 4566777777643 2 4
Q ss_pred hhHHhcCCCcee-EEEEcCC
Q 014743 314 LDQALLRPGRID-RKIEFPN 332 (419)
Q Consensus 314 ld~allr~gRfd-~~I~~~~ 332 (419)
+++.|.. ||. ..|.+|+
T Consensus 120 ~~~~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 120 FSPDLYY--RLSQLEIHLPP 137 (138)
T ss_dssp HHHHHHH--HCSTCEEEE--
T ss_pred hhHHHHH--HhCCCEEeCCC
Confidence 5666765 664 4566665
No 232
>PF13173 AAA_14: AAA domain
Probab=98.84 E-value=3.8e-08 Score=84.52 Aligned_cols=120 Identities=21% Similarity=0.344 Sum_probs=75.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCC
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 273 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~ 273 (419)
+.++|+||.||||||+++.++..+. ..++.+++.+.......... +.+.+.......+.+|||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 5689999999999999999998775 77888888765443211111 112222212225689999999885
Q ss_pred CCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHh--cCCCceeEEEEcCCCCHHH
Q 014743 274 GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQAL--LRPGRIDRKIEFPNPNEES 337 (419)
Q Consensus 274 ~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~al--lr~gRfd~~I~~~~P~~~~ 337 (419)
+.....+..+.+. ..++.||+|++....+.... .-.||.. .+.+.|.+-.|
T Consensus 74 ------~~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 74 ------PDWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------ccHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 2344455555542 23566777777665553322 2256876 67777777654
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=98.84 E-value=1.3e-08 Score=98.19 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhch-hHHHHHHHHHHHHhhCCceEEecccccccc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGS 268 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~-~~~~i~~lf~~a~~~~psVl~iDEiD~l~~ 268 (419)
..+.+++|+||||||||+|+.+++... +..+..+++.++...+... ..+.+...+... ...|.+++|||++.+.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~- 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP- 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC-
Confidence 456789999999999999999998653 5566777777776543221 122334445433 3467899999997742
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 269 ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 269 ~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
.+......+.++++.... . + .+|+|||.+
T Consensus 178 ---------~~~~~~~~lf~li~~r~~---~-~-s~iiTsn~~ 206 (259)
T PRK09183 178 ---------FSQEEANLFFQVIAKRYE---K-G-SMILTSNLP 206 (259)
T ss_pred ---------CChHHHHHHHHHHHHHHh---c-C-cEEEecCCC
Confidence 334455678888876521 1 2 367788875
No 234
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.84 E-value=4.7e-08 Score=101.29 Aligned_cols=196 Identities=21% Similarity=0.278 Sum_probs=116.7
Q ss_pred cccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhh
Q 014743 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYI 236 (419)
Q Consensus 160 ~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~ 236 (419)
+..+.|.....+.+.+.+... ......++++|++||||+++|+++.... +.+|+.++|..+....+
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred ccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 356778777777777766431 1234668999999999999999998754 56899999987643321
Q ss_pred -----chhHHH----H---HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc------cc
Q 014743 237 -----GEGSRM----V---RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF------EA 298 (419)
Q Consensus 237 -----g~~~~~----i---~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~------~~ 298 (419)
|...+. . ...|+ ......||||||+.+ +...+..+.+++...... ..
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l------------~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDL------------PLNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhC------------CHHHHHHHHHHHhhCeEEeCCCCcee
Confidence 111000 0 01121 123568999999994 467888888888753210 01
Q ss_pred CCCeEEEEEeCCc-------chhhHHhcCCCce-eEEEEcCCCCH--HHHHHHHHHHHhhccc----C-CCCC---HHHH
Q 014743 299 SNKIKVLMATNRI-------DILDQALLRPGRI-DRKIEFPNPNE--ESRLDILKIHSRRMNL----M-RGID---LKKI 360 (419)
Q Consensus 299 ~~~v~VI~tTn~~-------~~ld~allr~gRf-d~~I~~~~P~~--~~r~~Il~~~~~~~~~----~-~~~d---l~~l 360 (419)
..++.||+||+.. ..+.+.|.. |+ ...|.+|+... ++...+++.++..+.. . ..+. +..|
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 349 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRAL 349 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 1267888888764 223344433 44 24555665532 2333355555544321 1 1233 3344
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Q 014743 361 AEKMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 361 a~~t~G~sgadi~~l~~~A~~~a 383 (419)
.....--+.++|++++.+|...+
T Consensus 350 ~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 350 EAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC
Confidence 44443446689999999887654
No 235
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.84 E-value=3.5e-08 Score=100.56 Aligned_cols=198 Identities=22% Similarity=0.292 Sum_probs=120.7
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh
Q 014743 157 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ 233 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~ 233 (419)
...+..|+|...+..++.+.|..- ......|||.|.+||||-.+||+|-... +.+|+.+||..+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 345678999999999999988752 1456789999999999999999998754 78999999976533
Q ss_pred -----hhhchhHHHH-------HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc--cccC
Q 014743 234 -----KYIGEGSRMV-------RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG--FEAS 299 (419)
Q Consensus 234 -----~~~g~~~~~i-------~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~--~~~~ 299 (419)
..+|+..+.. +--|+.|- ..-||+|||-- .....+..++..|++.+- +..+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGe------------lPL~lQaKLLRvLQegEieRvG~~ 352 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGE------------LPLALQAKLLRVLQEGEIERVGGD 352 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecC---CCeEechhhcc------------CCHHHHHHHHHHHhhcceeecCCC
Confidence 2333322211 12233332 34799999866 346788888888876432 1111
Q ss_pred ----CCeEEEEEeCCcchhhHHhcCCCceeE-------EEEcCCCCHHHH----HHHHHHHHhhc----cc-CCCCCHHH
Q 014743 300 ----NKIKVLMATNRIDILDQALLRPGRIDR-------KIEFPNPNEESR----LDILKIHSRRM----NL-MRGIDLKK 359 (419)
Q Consensus 300 ----~~v~VI~tTn~~~~ld~allr~gRfd~-------~I~~~~P~~~~r----~~Il~~~~~~~----~~-~~~~dl~~ 359 (419)
-+|.||++||+ +|..++. .|+|-. ++.+..|--.+| --+...++.++ +. .-.+.-..
T Consensus 353 r~ikVDVRiIAATNR--DL~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~A 429 (550)
T COG3604 353 RTIKVDVRVIAATNR--DLEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEA 429 (550)
T ss_pred ceeEEEEEEEeccch--hHHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHH
Confidence 16889999997 2333332 344411 222333333333 22223344432 22 11122222
Q ss_pred HHHHcC-CC--CHHHHHHHHHHHHHHH
Q 014743 360 IAEKMN-GA--SGAELKAVCTEAGMFA 383 (419)
Q Consensus 360 la~~t~-G~--sgadi~~l~~~A~~~a 383 (419)
+..... +| +-+++++++.+|+..|
T Consensus 430 l~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 430 LELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 222221 23 4599999999999987
No 236
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.83 E-value=2.5e-08 Score=93.54 Aligned_cols=114 Identities=26% Similarity=0.378 Sum_probs=80.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch-----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------------------- 231 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l----------------------------------- 231 (419)
++.+.++..+-+.|++|||||||++++|... ...-+.+++..+
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHh
Confidence 3456788899999999999999999999732 333444444211
Q ss_pred ----------------------------hhhhhchhHHHHHHHHHHHH--hhCCceEEecccccccccccCCCCCCCCHH
Q 014743 232 ----------------------------VQKYIGEGSRMVRELFVMAR--EHAPSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 232 ----------------------------~~~~~g~~~~~i~~lf~~a~--~~~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
..+|+.+..++-++-+..|| ...|.+|++|| +++..|..
T Consensus 107 Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE-----------ptSaLD~s 175 (252)
T COG1124 107 EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE-----------PTSALDVS 175 (252)
T ss_pred hhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC-----------chhhhcHH
Confidence 12233344444444444444 46799999999 66678999
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
++..++.+|.++. ...+..+|+.||+...+..
T Consensus 176 iQa~IlnlL~~l~---~~~~lt~l~IsHdl~~v~~ 207 (252)
T COG1124 176 VQAQILNLLLELK---KERGLTYLFISHDLALVEH 207 (252)
T ss_pred HHHHHHHHHHHHH---HhcCceEEEEeCcHHHHHH
Confidence 9998988888874 4567889999999876654
No 237
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.82 E-value=3.5e-08 Score=93.93 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHh
Q 014743 243 VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQAL 318 (419)
Q Consensus 243 i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~al 318 (419)
.|-++++|....|.++++|| |..+.|+..+..+.++|.++. ..+..|++.||+.+.+...+
T Consensus 146 QRV~lARAL~~~p~lllLDE-----------P~~gvD~~~~~~i~~lL~~l~----~eg~tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDE-----------PFTGVDVAGQKEIYDLLKELR----QEGKTVLMVTHDLGLVMAYF 206 (254)
T ss_pred HHHHHHHHhccCCCEEEecC-----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCcHHhHhhC
Confidence 35666777788999999999 778899999999999999984 33889999999988765543
No 238
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.82 E-value=4.5e-08 Score=101.85 Aligned_cols=212 Identities=18% Similarity=0.247 Sum_probs=129.3
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhh--
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKY-- 235 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~-- 235 (419)
..+.|......++.+.+..- ......+++.|.+||||+++|+++.... +.+|+.++|..+-..+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred cceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 45777777777776666431 1344678999999999999999998754 5789999998763322
Q ss_pred ---hchhHHH----HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc------cCCCe
Q 014743 236 ---IGEGSRM----VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE------ASNKI 302 (419)
Q Consensus 236 ---~g~~~~~----i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~------~~~~v 302 (419)
+|...+. ...............||||||+.+ +...+..+.+++....... ...++
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l------------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ 270 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM------------PLDAQTRLLRVLADGEFYRVGGRTPIKVDV 270 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC------------CHHHHHHHHHHHhcCcEEECCCCceeeeee
Confidence 2211100 000000011223568999999994 4667888888887543111 11257
Q ss_pred EEEEEeCCcc-------hhhHHhcCCCcee-EEEEcCCCC--HHHHHHHHHHHHhhcccC-----CCCCHH---HHHHHc
Q 014743 303 KVLMATNRID-------ILDQALLRPGRID-RKIEFPNPN--EESRLDILKIHSRRMNLM-----RGIDLK---KIAEKM 364 (419)
Q Consensus 303 ~VI~tTn~~~-------~ld~allr~gRfd-~~I~~~~P~--~~~r~~Il~~~~~~~~~~-----~~~dl~---~la~~t 364 (419)
.||+||+..- .+.+.|.. |+. ..|.+|+.. .++...++..++...... ..++-+ .|....
T Consensus 271 rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (463)
T TIGR01818 271 RIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLR 348 (463)
T ss_pred EEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 7888887542 33444544 544 477788776 566777777666543211 123333 333332
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 365 NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 365 ~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
.--+-++|++++.+|...+ ....++.+|+...+
T Consensus 349 wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 349 WPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred CCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 2224589999999887665 44578888887655
No 239
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.81 E-value=6.9e-08 Score=100.24 Aligned_cols=208 Identities=21% Similarity=0.221 Sum_probs=117.5
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhh--
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKY-- 235 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~-- 235 (419)
..+.|.......+.+.+... ......++++|++||||+++|+++.... +.+|+.++|..+-...
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~ 211 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKI-----------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLE 211 (457)
T ss_pred cceecccHHHhHHHHHHHHH-----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHH
Confidence 45677666666665554331 1234679999999999999999997653 5789999998764322
Q ss_pred ---hchhHHHH-------HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc--c----cC
Q 014743 236 ---IGEGSRMV-------RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF--E----AS 299 (419)
Q Consensus 236 ---~g~~~~~i-------~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~--~----~~ 299 (419)
+|...+.. ...+.. ....+|||||||.+ +...+..+..++...... . ..
T Consensus 212 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l------------~~~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 212 SELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEM------------PLVLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhC------------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 22111000 011222 23458999999995 466788888888753210 0 11
Q ss_pred CCeEEEEEeCCcc-------hhhHHhcCCCce-eEEEEcCCCC--HHHHHHHHHHHHhhccc----C-CCCCH---HHHH
Q 014743 300 NKIKVLMATNRID-------ILDQALLRPGRI-DRKIEFPNPN--EESRLDILKIHSRRMNL----M-RGIDL---KKIA 361 (419)
Q Consensus 300 ~~v~VI~tTn~~~-------~ld~allr~gRf-d~~I~~~~P~--~~~r~~Il~~~~~~~~~----~-~~~dl---~~la 361 (419)
.++.||+|||..- .+.+.+.. |+ ...|.+|+.. .++...++..++..... . ..++- ..|.
T Consensus 277 ~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 354 (457)
T PRK11361 277 VDIRIIAATNRDLQAMVKEGTFREDLFY--RLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLT 354 (457)
T ss_pred eceEEEEeCCCCHHHHHHcCCchHHHHH--HhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 3578999998532 22333332 33 2234444433 12333344455444321 1 12332 3333
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
.....-+.+++++++.+|...+ ....++.+|+...
T Consensus 355 ~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~ 389 (457)
T PRK11361 355 AWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQ 389 (457)
T ss_pred cCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHh
Confidence 3333346689999998887654 3345666666543
No 240
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.81 E-value=3.5e-08 Score=89.81 Aligned_cols=114 Identities=28% Similarity=0.370 Sum_probs=78.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh---------------------------hhhhchh
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------QKYIGEG 239 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~---------------------------~~~~g~~ 239 (419)
++.+.++..+.|.||+|+|||||++.|++.. ...-+.+++.++. ...+...
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 3456788889999999999999999999864 3445555553321 1111111
Q ss_pred HHHHH--HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 240 SRMVR--ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 240 ~~~i~--~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
.+..+ -.+..|....|.++++|| |+.+.|......+.+++..+. ...+..+|++||.++.+..
T Consensus 99 S~G~~qrl~laral~~~p~llllDE-----------P~~~LD~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDE-----------PTSHLDIAHQIELLELLRRLA---RERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 22222 334445567899999999 677788888888999888763 2225678999999886643
No 241
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.80 E-value=2.9e-08 Score=94.89 Aligned_cols=109 Identities=24% Similarity=0.356 Sum_probs=76.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.++.+.-+.+.||+|||||||.|++++.+ ...-+.+++.++.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 345677778999999999999999999855 3445555553221
Q ss_pred ------------------------------hhhhchhHHH--HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 233 ------------------------------QKYIGEGSRM--VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 233 ------------------------------~~~~g~~~~~--i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.+++.+.+++ .+-++++|....|.||++|| |++..|.
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE-----------PTs~LDi 171 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE-----------PTSHLDI 171 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC-----------CccccCH
Confidence 0111122222 23455566677899999999 7788888
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
..+-.+++++..+. ...+..||+++|+++
T Consensus 172 ~~Q~evl~ll~~l~---~~~~~tvv~vlHDlN 200 (258)
T COG1120 172 AHQIEVLELLRDLN---REKGLTVVMVLHDLN 200 (258)
T ss_pred HHHHHHHHHHHHHH---HhcCCEEEEEecCHH
Confidence 88888888888773 456788999999865
No 242
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.79 E-value=3.5e-08 Score=92.32 Aligned_cols=112 Identities=24% Similarity=0.336 Sum_probs=80.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch-------------------------------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL------------------------------------- 231 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l------------------------------------- 231 (419)
.+.++..+-+.||+|||||+|.|.+...+ ...-+.+.+.++
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 45667778899999999999999999754 333444443221
Q ss_pred -----------------------------hhhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 232 -----------------------------VQKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 232 -----------------------------~~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
..+|+.+..+.+ |..+++|....|.+||+|| |+++.||
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DE-----------PtsGLDP 178 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDE-----------PTSGLDP 178 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecC-----------CCCCCCc
Confidence 122444544544 3455556667899999999 7888999
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
-....+.+++..+. ..-+.++|+.||+.+.+-.
T Consensus 179 I~a~~~~~LI~~L~---~~lg~T~i~VTHDl~s~~~ 211 (263)
T COG1127 179 ISAGVIDELIRELN---DALGLTVIMVTHDLDSLLT 211 (263)
T ss_pred chHHHHHHHHHHHH---HhhCCEEEEEECChHHHHh
Confidence 88888999988874 2347889999998776543
No 243
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.79 E-value=3.6e-08 Score=97.41 Aligned_cols=113 Identities=26% Similarity=0.351 Sum_probs=76.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh--------------------------------hh
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------------------------------QK 234 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~--------------------------------~~ 234 (419)
++.+.++..+.|.||+|+|||||++.|++.+ ...-+.+++.++. ..
T Consensus 27 sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~ 106 (306)
T PRK13537 27 SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGR 106 (306)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHH
Confidence 3456778889999999999999999999854 2333444332210 00
Q ss_pred hhc----------------------------hhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHH
Q 014743 235 YIG----------------------------EGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 284 (419)
Q Consensus 235 ~~g----------------------------~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~ 284 (419)
+.| ..++.. +-.+..|..+.|.+||+|| |+++.|+..+.
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE-----------Pt~gLD~~~~~ 175 (306)
T PRK13537 107 YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE-----------PTTGLDPQARH 175 (306)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC-----------CCcCCCHHHHH
Confidence 001 000111 1223334457899999999 78889999999
Q ss_pred HHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 285 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 285 ~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
.+++++.++. ..+..||++||..+.+..
T Consensus 176 ~l~~~l~~l~----~~g~till~sH~l~e~~~ 203 (306)
T PRK13537 176 LMWERLRSLL----ARGKTILLTTHFMEEAER 203 (306)
T ss_pred HHHHHHHHHH----hCCCEEEEECCCHHHHHH
Confidence 9999998873 346789999999887654
No 244
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.78 E-value=6.3e-08 Score=88.16 Aligned_cols=110 Identities=22% Similarity=0.248 Sum_probs=76.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch--hhhhhchhHH--HHHHHHHHHHhhCCceEEecccc
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL--VQKYIGEGSR--MVRELFVMAREHAPSIIFMDEID 264 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l--~~~~~g~~~~--~i~~lf~~a~~~~psVl~iDEiD 264 (419)
.+.++..+.|.||+|+|||||++.|++.. ...-+.+++..+ ...... ..+ ..+-.+..+....|.++++||
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-LSgGq~qrv~laral~~~p~lllLDE-- 97 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-LSGGELQRVAIAAALLRNATFYLFDE-- 97 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC-CCHHHHHHHHHHHHHhcCCCEEEEEC--
Confidence 35678889999999999999999999864 345566655322 111111 122 223344555667899999999
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 265 SIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 265 ~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
++++.|......+.+++.++. ..++..||++||..+.+.
T Consensus 98 ---------Pts~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 98 ---------PSAYLDIEQRLNAARAIRRLS---EEGKKTALVVEHDLAVLD 136 (177)
T ss_pred ---------CcccCCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHHHHH
Confidence 667788888888888887762 223367889999887664
No 245
>PRK15115 response regulator GlrR; Provisional
Probab=98.78 E-value=1.2e-07 Score=98.19 Aligned_cols=184 Identities=21% Similarity=0.309 Sum_probs=106.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhh-----chhHHH-------HHHHHHHHHhhCCceEE
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYI-----GEGSRM-------VRELFVMAREHAPSIIF 259 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~-----g~~~~~-------i~~lf~~a~~~~psVl~ 259 (419)
...++++|++|||||++|+++.... +.+|+.++|..+-.... |...+. ...+|+. .....||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA---AEGGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEE---CCCCEEE
Confidence 4568999999999999999998754 57899999987633221 111000 0011221 2346899
Q ss_pred ecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc------ccCCCeEEEEEeCCcchhhHHhcCCCce---------
Q 014743 260 MDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF------EASNKIKVLMATNRIDILDQALLRPGRI--------- 324 (419)
Q Consensus 260 iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~------~~~~~v~VI~tTn~~~~ld~allr~gRf--------- 324 (419)
|||||.| ....+..+..++...... ....++.+|+||+.. +...+ ..|+|
T Consensus 234 l~~i~~l------------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~~l~ 298 (444)
T PRK15115 234 LDEIGDM------------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAM-ARGEFREDLYYRLN 298 (444)
T ss_pred EEccccC------------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHH-HcCCccHHHHHhhc
Confidence 9999995 466778888888653211 011267899998853 33333 33455
Q ss_pred eEEEEcCCCCH--HHHHHHHHHHHhhccc-----CCCCC---HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 014743 325 DRKIEFPNPNE--ESRLDILKIHSRRMNL-----MRGID---LKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 394 (419)
Q Consensus 325 d~~I~~~~P~~--~~r~~Il~~~~~~~~~-----~~~~d---l~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~e 394 (419)
...|.+|+... ++...+++.++..... ...++ +..|......-+.++|++++++|...+ ....|+.+
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~ 375 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDA 375 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChh
Confidence 33444554432 2233344555543211 11223 344555543446789999998887644 34456666
Q ss_pred HHHHH
Q 014743 395 DFEMA 399 (419)
Q Consensus 395 D~~~A 399 (419)
|+...
T Consensus 376 ~l~~~ 380 (444)
T PRK15115 376 LVEQA 380 (444)
T ss_pred hhhhh
Confidence 66433
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.77 E-value=4e-08 Score=94.50 Aligned_cols=119 Identities=17% Similarity=0.286 Sum_probs=76.6
Q ss_pred CcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhchhH-
Q 014743 165 GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEGS- 240 (419)
Q Consensus 165 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~~~- 240 (419)
+...+...+...+... ..+.+++|+||||||||+||-||++++ +..++.+..++++...-..-.
T Consensus 87 ~~~~~l~~~~~~~~~~------------~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 87 IDKKALEDLASLVEFF------------ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred hhHHHHHHHHHHHHHh------------ccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc
Confidence 4555666666655432 367899999999999999999999976 677888888888776432211
Q ss_pred HHH-HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 241 RMV-RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 241 ~~i-~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
+.. .++... -..+.||+|||+-.. ..+......+.+++...- ..... |+|||.+-
T Consensus 155 ~~~~~~l~~~--l~~~dlLIiDDlG~~----------~~~~~~~~~~~q~I~~r~----~~~~~-~~tsN~~~ 210 (254)
T COG1484 155 GRLEEKLLRE--LKKVDLLIIDDIGYE----------PFSQEEADLLFQLISRRY----ESRSL-IITSNLSF 210 (254)
T ss_pred CchHHHHHHH--hhcCCEEEEecccCc----------cCCHHHHHHHHHHHHHHH----hhccc-eeecCCCh
Confidence 111 112221 234679999998663 134455666777766542 12222 88999753
No 247
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=7e-08 Score=85.70 Aligned_cols=113 Identities=27% Similarity=0.394 Sum_probs=77.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchhh-------hhhch----hHH-HHHHHHHHHHhhCC
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQ-------KYIGE----GSR-MVRELFVMAREHAP 255 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~~-------~~~g~----~~~-~i~~lf~~a~~~~p 255 (419)
+.+.++..+.|.||+|+|||||+++|++... ..-+.+++..+.. ..++. +.+ ..+-.+..+....|
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNP 99 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC
Confidence 4467778899999999999999999998653 3455666543321 11221 111 22233455666789
Q ss_pred ceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHH
Q 014743 256 SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 317 (419)
Q Consensus 256 sVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~a 317 (419)
.++++|| ++.+.|......+.+++.++. ..+..+|++||..+.+...
T Consensus 100 ~i~ilDE-----------p~~~lD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 100 DLLLLDE-----------PTSGLDPASRERLLELLRELA----EEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHh
Confidence 9999999 556788888888888887763 2246789999998876643
No 248
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.77 E-value=8e-08 Score=86.88 Aligned_cols=110 Identities=24% Similarity=0.392 Sum_probs=75.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhh-------h---hhc---------------hhHHH
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ-------K---YIG---------------EGSRM 242 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~-------~---~~g---------------~~~~~ 242 (419)
+.+.++..+.|.||+|+|||||+++|++.. ...-+.+++.++.. . |+. .+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHH
Confidence 445677889999999999999999999864 23344454432210 0 000 01112
Q ss_pred HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 243 VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 243 i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
.+-.+..|....|.++++|| |+++.|......+.+++..+. ..+..||++||+.+.+
T Consensus 103 qrv~la~al~~~p~~lllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~~ 159 (173)
T cd03246 103 QRLGLARALYGNPRILVLDE-----------PNSHLDVEGERALNQAIAALK----AAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHhcCCCEEEEEC-----------CccccCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHH
Confidence 33455566678899999999 677889999999999988763 2356789999987654
No 249
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.77 E-value=4.5e-08 Score=92.28 Aligned_cols=129 Identities=26% Similarity=0.385 Sum_probs=83.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhc--cCCceEEEeCcc-------------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSE------------------------------------- 230 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~--~~~~~i~v~~s~------------------------------------- 230 (419)
+.+..+.-+.|.||+||||||+.|.|-+- ....-+.+++.+
T Consensus 22 l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPK 101 (309)
T ss_pred EEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh
Confidence 45677777899999999999999999763 234455555432
Q ss_pred --------------------------hhhhhhchhHHHHHHHHHH--HHhhCCceEEecccccccccccCCCCCCCCHHH
Q 014743 231 --------------------------LVQKYIGEGSRMVRELFVM--AREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 231 --------------------------l~~~~~g~~~~~i~~lf~~--a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
|..+|+.+.++.-++-.-. |....|.||++|| |.+..|+-.
T Consensus 102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE-----------PFgALDpI~ 170 (309)
T COG1125 102 LLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDE-----------PFGALDPIT 170 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC-----------CccccChhh
Confidence 2333454544444444333 4456799999999 667788888
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCce-----eEEEEcCCCCH
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRI-----DRKIEFPNPNE 335 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRf-----d~~I~~~~P~~ 335 (419)
+..+.+.+..+. ..-+.+||+.||+.+ .|+.-..|+ .+.+.+..|+.
T Consensus 171 R~~lQ~e~~~lq---~~l~kTivfVTHDid---EA~kLadri~vm~~G~i~Q~~~P~~ 222 (309)
T COG1125 171 RKQLQEEIKELQ---KELGKTIVFVTHDID---EALKLADRIAVMDAGEIVQYDTPDE 222 (309)
T ss_pred HHHHHHHHHHHH---HHhCCEEEEEecCHH---HHHhhhceEEEecCCeEEEeCCHHH
Confidence 887877776664 334667888898754 444221122 24566666653
No 250
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.77 E-value=4.4e-08 Score=96.69 Aligned_cols=102 Identities=20% Similarity=0.291 Sum_probs=65.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhch-hHHHHHHHHHHHHhhCCceEEeccccccccc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSA 269 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~-~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~ 269 (419)
.+++++|+||+|||||+|+.|+|+++ +..+..+..++++...... ..+.+...+... ....||+|||+.+-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e--- 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE--- 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc---
Confidence 46799999999999999999999986 6677777777776553221 111223344333 34679999998762
Q ss_pred ccCCCCCCCCHHHH-HHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 270 RMESGSGNGDSEVQ-RTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 270 r~~~~~~~~~~~~~-~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
...+... .++..+++.- -..+..+|+|||.+
T Consensus 230 -------~~s~~~~~~ll~~Il~~R----~~~~~~ti~TSNl~ 261 (306)
T PRK08939 230 -------QMSSWVRDEVLGVILQYR----MQEELPTFFTSNFD 261 (306)
T ss_pred -------cccHHHHHHHHHHHHHHH----HHCCCeEEEECCCC
Confidence 1223333 2344454431 12356688899964
No 251
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=8.8e-08 Score=86.45 Aligned_cols=110 Identities=26% Similarity=0.346 Sum_probs=75.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhh-------hhhch----------------hHHH--
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ-------KYIGE----------------GSRM-- 242 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~-------~~~g~----------------~~~~-- 242 (419)
+.+.++..+.|.||+|+|||||+++|++.. ...-+.+++..+.. ..++. ..+.
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 456788899999999999999999999864 23344454432210 00000 1111
Q ss_pred HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 243 VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 243 i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.+-.+..|....|.++++|| |+.+.|......+.+++.++. . +..||++||.++.+.
T Consensus 103 ~rl~la~al~~~p~llllDE-----------P~~gLD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~ 159 (171)
T cd03228 103 QRIAIARALLRDPPILILDE-----------ATSALDPETEALILEALRALA----K-GKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHhcCCCEEEEEC-----------CCcCCCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHHH
Confidence 22334555667899999999 677889988888999888763 2 377899999987763
No 252
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.76 E-value=7.3e-08 Score=84.65 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=73.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhhhhhchhHH--HHHHHHHHHHhhCCceEEeccccc
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQKYIGEGSR--MVRELFVMAREHAPSIIFMDEIDS 265 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~~~~g~~~~--~i~~lf~~a~~~~psVl~iDEiD~ 265 (419)
+.+.++..+.+.||+|+|||||++++++.. ...-+.+++...+. |+.+... ..+-.+..|....|.++++||
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~-~~~~lS~G~~~rv~laral~~~p~illlDE--- 96 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIG-YFEQLSGGEKMRLALAKLLLENPNLLLLDE--- 96 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEE-EEccCCHHHHHHHHHHHHHhcCCCEEEEeC---
Confidence 456788899999999999999999999865 23344444321000 1110111 222334566677899999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 266 IGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 266 l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
|.++.|......+.+++.++ +..||++||..+.+
T Consensus 97 --------P~~~LD~~~~~~l~~~l~~~-------~~til~~th~~~~~ 130 (144)
T cd03221 97 --------PTNHLDLESIEALEEALKEY-------PGTVILVSHDRYFL 130 (144)
T ss_pred --------CccCCCHHHHHHHHHHHHHc-------CCEEEEEECCHHHH
Confidence 66678888888888888765 24688899987765
No 253
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.76 E-value=4.9e-08 Score=88.77 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=76.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccCC-------------ceEEEeCcch----------hhhhhchhHHH--HH
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------------TFIRVSGSEL----------VQKYIGEGSRM--VR 244 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~-------------~~i~v~~s~l----------~~~~~g~~~~~--i~ 244 (419)
+.+.++..+.|.||+|+|||||.+++....+. ++..+.-.++ ..+.+....+. .+
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence 45677888999999999999999999732111 1111110001 11122222222 23
Q ss_pred HHHHHHHhhC--CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCC
Q 014743 245 ELFVMAREHA--PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPG 322 (419)
Q Consensus 245 ~lf~~a~~~~--psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~g 322 (419)
-.+..|.... |.++++|| |.++.|......+.+++.++. ..+..||++||..+.+ +
T Consensus 96 l~laral~~~~~p~llLlDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~g~tvIivSH~~~~~-----~-- 153 (176)
T cd03238 96 VKLASELFSEPPGTLFILDE-----------PSTGLHQQDINQLLEVIKGLI----DLGNTVILIEHNLDVL-----S-- 153 (176)
T ss_pred HHHHHHHhhCCCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHH-----H--
Confidence 3445555677 99999999 667788988888988888762 2467789999987653 2
Q ss_pred ceeEEEEcC
Q 014743 323 RIDRKIEFP 331 (419)
Q Consensus 323 Rfd~~I~~~ 331 (419)
..|+++.+.
T Consensus 154 ~~d~i~~l~ 162 (176)
T cd03238 154 SADWIIDFG 162 (176)
T ss_pred hCCEEEEEC
Confidence 345666654
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.75 E-value=1.4e-08 Score=92.46 Aligned_cols=102 Identities=22% Similarity=0.382 Sum_probs=64.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhch-hHHHHHHHHHHHHhhCCceEEecccccccc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGS 268 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~-~~~~i~~lf~~a~~~~psVl~iDEiD~l~~ 268 (419)
..+.+++|+||||||||+||.+++.++ +..+..++.++++...-.. .......++... ..+.+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~~-- 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGYE-- 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc--ccccEeccccccee--
Confidence 456889999999999999999999865 6778888888887654321 111223344333 34579999997552
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 269 ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 269 ~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
.........+.++++.-- . ++ .+|+|||..
T Consensus 121 --------~~~~~~~~~l~~ii~~R~---~-~~-~tIiTSN~~ 150 (178)
T PF01695_consen 121 --------PLSEWEAELLFEIIDERY---E-RK-PTIITSNLS 150 (178)
T ss_dssp -----------HHHHHCTHHHHHHHH---H-T--EEEEEESS-
T ss_pred --------eecccccccchhhhhHhh---c-cc-CeEeeCCCc
Confidence 133455667788887652 1 22 466799964
No 255
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.9e-08 Score=102.30 Aligned_cols=46 Identities=30% Similarity=0.536 Sum_probs=39.7
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
.+|.||.||+.+++.+.-+.. -+.++||+||||||||++|+-+..-
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhccc
Confidence 467899999999999987653 3578999999999999999999764
No 256
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.75 E-value=6e-08 Score=93.65 Aligned_cols=111 Identities=26% Similarity=0.401 Sum_probs=76.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhc--cCCceEEEeCc---ch---------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGS---EL--------------------------------- 231 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~--~~~~~i~v~~s---~l--------------------------------- 231 (419)
+.++.+.-+-|+||+|+|||||.|.||+- .+...|.+++. +.
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl 102 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGL 102 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcc
Confidence 45677888999999999999999999973 24445555443 11
Q ss_pred ----------------------------hhhhhchhHHHHHHHHHH--HHhhCCceEEecccccccccccCCCCCCCCHH
Q 014743 232 ----------------------------VQKYIGEGSRMVRELFVM--AREHAPSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 232 ----------------------------~~~~~g~~~~~i~~lf~~--a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
...|+.+..+..++-... |..-.|.||++|| |.+..|..
T Consensus 103 ~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE-----------Pf~ALDa~ 171 (345)
T COG1118 103 KVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE-----------PFGALDAK 171 (345)
T ss_pred cccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC-----------CchhhhHH
Confidence 122344444444444444 4456799999999 66778888
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
++..+-..|..+. ..-++..++.||+.+..
T Consensus 172 vr~~lr~wLr~~~---~~~~~ttvfVTHD~eea 201 (345)
T COG1118 172 VRKELRRWLRKLH---DRLGVTTVFVTHDQEEA 201 (345)
T ss_pred HHHHHHHHHHHHH---HhhCceEEEEeCCHHHH
Confidence 8888877776663 33478889999987644
No 257
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.75 E-value=6.8e-08 Score=94.88 Aligned_cols=114 Identities=26% Similarity=0.372 Sum_probs=78.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh--------------------------------hhh
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------------------------------QKY 235 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~--------------------------------~~~ 235 (419)
+.+.++.-+.|.||+|+|||||.|+|++.. ...-+.+++.+.. ...
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l 105 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL 105 (293)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHH
Confidence 345677779999999999999999999854 3334444432110 011
Q ss_pred hch----------------------------hHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 236 IGE----------------------------GSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 236 ~g~----------------------------~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
.|. ..... +-.+..|..+.|.++|+|| |+++.|+.....
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE-----------Pt~GLDp~~~~~ 174 (293)
T COG1131 106 YGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE-----------PTSGLDPESRRE 174 (293)
T ss_pred hCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC-----------CCcCCCHHHHHH
Confidence 110 01111 2233345557899999999 888999999999
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhhHH
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILDQA 317 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~a 317 (419)
++++|..+. ..+++.|+++||.++.+..-
T Consensus 175 ~~~~l~~l~---~~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 175 IWELLRELA---KEGGVTILLSTHILEEAEEL 203 (293)
T ss_pred HHHHHHHHH---hCCCcEEEEeCCcHHHHHHh
Confidence 999998883 34458999999999887663
No 258
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.74 E-value=1.1e-07 Score=86.25 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=77.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhh------h---h----------------hchhHH
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ------K---Y----------------IGEGSR 241 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~------~---~----------------~g~~~~ 241 (419)
++.+.++..+.|.||+|+|||||+++|++.. ...-+.+++.++.. . | +....+
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 3456788899999999999999999999864 23445555432210 0 0 111111
Q ss_pred --HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 242 --MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 242 --~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
..+-.+..|....|.++++|| ++++.|......+.+++.++. . +..||++||.++.+.
T Consensus 102 G~~qrv~laral~~~p~~lllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDE-----------PTVGLDPITERQLLSLIFEVL----K-DKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHHH
Confidence 223444556678899999999 667789988899999998762 2 467888999887653
No 259
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.74 E-value=3.4e-08 Score=98.42 Aligned_cols=129 Identities=26% Similarity=0.330 Sum_probs=82.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhc--cCCceEEEeCcch------------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL------------------------------------ 231 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~--~~~~~i~v~~s~l------------------------------------ 231 (419)
+.+.++.-+-|.||+||||||+.|+||+. .+..-|.+++.++
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~ 105 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR 105 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence 44566677889999999999999999974 3444555554322
Q ss_pred ------------------------hhhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 232 ------------------------VQKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 232 ------------------------~~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
..+++.+..+.. |-.+.+|....|.|+++|| +-+..|...+..
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE-----------PlSaLD~kLR~~ 174 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE-----------PLSALDAKLREQ 174 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC-----------cccchhHHHHHH
Confidence 112233333333 3444445567799999999 666778777777
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhh----H-HhcCCCceeEEEEcCCCCH
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILD----Q-ALLRPGRIDRKIEFPNPNE 335 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld----~-allr~gRfd~~I~~~~P~~ 335 (419)
|..-+..+. ..-++.+|..||+.++-- . ++++.|++ ..+..|.+
T Consensus 175 mr~Elk~lq---~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I---~Q~gtP~e 223 (352)
T COG3842 175 MRKELKELQ---RELGITFVYVTHDQEEALAMSDRIAVMNDGRI---EQVGTPEE 223 (352)
T ss_pred HHHHHHHHH---HhcCCeEEEEECCHHHHhhhccceEEccCCce---eecCCHHH
Confidence 766665553 345788999999876321 1 34555544 45665543
No 260
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.73 E-value=7.6e-08 Score=94.90 Aligned_cols=112 Identities=22% Similarity=0.378 Sum_probs=75.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh--------------------------------hhh
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------------------------------QKY 235 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~--------------------------------~~~ 235 (419)
+.+.++..+.|.||+|+|||||+++|++.+ ...-+.+++.++. ...
T Consensus 14 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 93 (302)
T TIGR01188 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL 93 (302)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 456788889999999999999999999854 2333444332110 000
Q ss_pred hc----------------------------hhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 236 IG----------------------------EGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 236 ~g----------------------------~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
.| ...++. +-.+..|..+.|.+|++|| |+++.|+.....
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE-----------Pt~gLD~~~~~~ 162 (302)
T TIGR01188 94 YGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE-----------PTTGLDPRTRRA 162 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCcCCCHHHHHH
Confidence 00 000111 1222334447899999999 778899999999
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
+.+++..+. ..+..||++||..+.+..
T Consensus 163 l~~~l~~~~----~~g~tvi~~sH~~~~~~~ 189 (302)
T TIGR01188 163 IWDYIRALK----EEGVTILLTTHYMEEADK 189 (302)
T ss_pred HHHHHHHHH----hCCCEEEEECCCHHHHHH
Confidence 999998873 236789999999876654
No 261
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.73 E-value=1.7e-07 Score=90.22 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=85.2
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhc---
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIG--- 237 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g--- 237 (419)
..+.||.-+++.|..++...+.++. -+.|-.+-|+|+|||||...++.||+.+-..- -.|.++..|++
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~h 152 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLH 152 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhcc
Confidence 3578999888888888876554433 13455566899999999999999998652110 11333333322
Q ss_pred ---------hhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHH---ccccccCCCeEEE
Q 014743 238 ---------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ---LDGFEASNKIKVL 305 (419)
Q Consensus 238 ---------~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~---l~~~~~~~~v~VI 305 (419)
+-+...+.+...++.++-+|.+|||+|++ ++.....+.-+|+- .++.+ ..+.++|
T Consensus 153 FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm------------p~gLld~lkpfLdyyp~v~gv~-frkaIFI 219 (344)
T KOG2170|consen 153 FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL------------PPGLLDVLKPFLDYYPQVSGVD-FRKAIFI 219 (344)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc------------CHhHHHHHhhhhcccccccccc-ccceEEE
Confidence 12233345556677888999999999994 56677777777763 33433 3466777
Q ss_pred EEeCCcc
Q 014743 306 MATNRID 312 (419)
Q Consensus 306 ~tTn~~~ 312 (419)
+-+|...
T Consensus 220 fLSN~gg 226 (344)
T KOG2170|consen 220 FLSNAGG 226 (344)
T ss_pred EEcCCcc
Confidence 7777654
No 262
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=1.1e-07 Score=86.04 Aligned_cols=111 Identities=27% Similarity=0.386 Sum_probs=75.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhh-----------------hhhc----h---hHH--
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ-----------------KYIG----E---GSR-- 241 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~-----------------~~~g----~---~~~-- 241 (419)
+.+.++..+.|.||+|+|||||++.|++.. ...-+.+++..+.. -+.+ + ..+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 446778889999999999999999999854 23334443322100 0111 0 111
Q ss_pred HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 242 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 242 ~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
..+-.+..|....|.|+++|| |+.+.|......+.+++.++. . .+..||++||.++.+.
T Consensus 101 ~qrv~laral~~~p~illlDE-----------Pt~~LD~~~~~~l~~~l~~~~---~-~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDE-----------PTSGLDPESRREFWELLRELK---K-EGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH---H-CCCEEEEECCCHHHHH
Confidence 123345566678899999999 667789999999999998773 2 2567889999877554
No 263
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.71 E-value=1.3e-07 Score=88.09 Aligned_cols=124 Identities=22% Similarity=0.266 Sum_probs=78.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch-----------h-------------------hhhh
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-----------V-------------------QKYI 236 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l-----------~-------------------~~~~ 236 (419)
++.+.++..+.|.||+|+|||||++.|++.. ...-+.+++.++ + ..+.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 101 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL 101 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc
Confidence 3456788889999999999999999999853 222233322110 0 0000
Q ss_pred chhHHHH--------------------------HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHH
Q 014743 237 GEGSRMV--------------------------RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 290 (419)
Q Consensus 237 g~~~~~i--------------------------~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL 290 (419)
+.....+ +-.+..|....|.++++|| |+++.|......+.++|
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l 170 (207)
T PRK13539 102 GGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE-----------PTAALDAAAVALFAELI 170 (207)
T ss_pred CCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHH
Confidence 0000011 1122223346799999999 77789999999999988
Q ss_pred HHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCH
Q 014743 291 NQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNE 335 (419)
Q Consensus 291 ~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~ 335 (419)
.++. ..+..||++||..+.++. |+++.+..|..
T Consensus 171 ~~~~----~~~~tiii~sH~~~~~~~--------~~~~~~~~~~~ 203 (207)
T PRK13539 171 RAHL----AQGGIVIAATHIPLGLPG--------ARELDLGPFAA 203 (207)
T ss_pred HHHH----HCCCEEEEEeCCchhhcc--------CcEEeecCccC
Confidence 8762 236779999999887764 44555655543
No 264
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.71 E-value=1.2e-07 Score=87.69 Aligned_cols=111 Identities=25% Similarity=0.306 Sum_probs=76.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc----CCceEEEeCcchh-------------------------------hh
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGSELV-------------------------------QK 234 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~s~l~-------------------------------~~ 234 (419)
+.+.++..+.|.||+|+|||||+++|++.. ...-+.+++.++. ..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~ 100 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY 100 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence 456788899999999999999999999862 3344555443221 00
Q ss_pred hhchhHHH--HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 235 YIGEGSRM--VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 235 ~~g~~~~~--i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
+.....+. .+-.+..|....|.|+++|| |+++.|......+.++|..+. ..+..||++||.++
T Consensus 101 ~~~~LS~G~~qrv~laral~~~p~illlDE-----------Pt~~LD~~~~~~l~~~L~~~~----~~~~tiii~sh~~~ 165 (200)
T cd03217 101 VNEGFSGGEKKRNEILQLLLLEPDLAILDE-----------PDSGLDIDALRLVAEVINKLR----EEGKSVLIITHYQR 165 (200)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH----HCCCEEEEEecCHH
Confidence 11111112 23334455567899999999 777889999999999998763 23567888999887
Q ss_pred hhh
Q 014743 313 ILD 315 (419)
Q Consensus 313 ~ld 315 (419)
.+.
T Consensus 166 ~~~ 168 (200)
T cd03217 166 LLD 168 (200)
T ss_pred HHH
Confidence 554
No 265
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.71 E-value=1.1e-07 Score=88.92 Aligned_cols=49 Identities=31% Similarity=0.531 Sum_probs=39.5
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
...|.|+++|| |+++.|+.....+.+++.++. ...+..||++||+++.+
T Consensus 156 ~~~p~lllLDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 156 ANDPKIILADE-----------PTGNLDSETGKEVMELLRELN---KEAGTTIVVVTHDPELA 204 (218)
T ss_pred ccCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCeEEEEECCHHHH
Confidence 36799999999 777899999999999998773 22367899999987754
No 266
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.71 E-value=1.4e-07 Score=87.57 Aligned_cols=111 Identities=22% Similarity=0.213 Sum_probs=71.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch--------------------hhh-------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL--------------------VQK------------- 234 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l--------------------~~~------------- 234 (419)
+.+.++..+.|.||+|+|||||+++|++.. ...-+.+++.++ ...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~ 100 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL 100 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc
Confidence 446778889999999999999999999853 222222222111 000
Q ss_pred ----------------------hhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHH
Q 014743 235 ----------------------YIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 290 (419)
Q Consensus 235 ----------------------~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL 290 (419)
.++...+.. +-.+..|....|.++++|| |+++.|+.....+.++|
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l 169 (205)
T cd03226 101 DAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE-----------PTSGLDYKNMERVGELI 169 (205)
T ss_pred CccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC-----------CCccCCHHHHHHHHHHH
Confidence 000001111 1222223446799999999 77789999999999999
Q ss_pred HHccccccCCCeEEEEEeCCcchhh
Q 014743 291 NQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 291 ~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.++. ..+..||++||+++.+.
T Consensus 170 ~~~~----~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 170 RELA----AQGKAVIVITHDYEFLA 190 (205)
T ss_pred HHHH----HCCCEEEEEeCCHHHHH
Confidence 8763 23567999999887654
No 267
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.4e-07 Score=85.70 Aligned_cols=112 Identities=29% Similarity=0.413 Sum_probs=75.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchh---------hh-----------hhc----h-----
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELV---------QK-----------YIG----E----- 238 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~---------~~-----------~~g----~----- 238 (419)
+.+.++..+.|.||+|+|||||+++|++... ..-+.+++.++. .. +.+ +
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 4467788899999999999999999997542 233444332110 00 000 0
Q ss_pred hH--HHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 239 GS--RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 239 ~~--~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.. ...+-.+..|....|.++++|| |..+.|......+.+++.++. ...+..+|++||+++.++
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDE-----------PTSALDPITRREVRALLKSLQ---AQLGITVVLVTHDLDEAA 165 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 11 1223445566678899999999 677889999999999998773 222577899999887664
No 268
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.70 E-value=1.6e-07 Score=87.83 Aligned_cols=50 Identities=30% Similarity=0.608 Sum_probs=39.7
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.|+++|| |+++.|......+.+++.++. ..+..||++||+++.+.
T Consensus 153 l~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 153 IVHKPPLLLADE-----------PTGNLDPELSRDIMRLFEEFN----RRGTTVLVATHDINLVE 202 (216)
T ss_pred HhcCCCEEEEeC-----------CCCcCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHH
Confidence 346799999999 777899999999999988763 23567899999877553
No 269
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.69 E-value=1.1e-07 Score=95.25 Aligned_cols=113 Identities=26% Similarity=0.371 Sum_probs=75.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch-----------------------------h---hh
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-----------------------------V---QK 234 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l-----------------------------~---~~ 234 (419)
++.+.++..+.|.||+|+|||||.+.|++.+ ...-+.+++.++ + ..
T Consensus 61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~ 140 (340)
T PRK13536 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGR 140 (340)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHH
Confidence 3456788889999999999999999999854 223333333211 0 00
Q ss_pred hhc----------------------------hhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHH
Q 014743 235 YIG----------------------------EGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 284 (419)
Q Consensus 235 ~~g----------------------------~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~ 284 (419)
+.+ ...+.. +-.+..|..+.|.+|++|| |+++.|+..+.
T Consensus 141 ~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDE-----------Pt~gLD~~~r~ 209 (340)
T PRK13536 141 YFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE-----------PTTGLDPHARH 209 (340)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCCCCCHHHHH
Confidence 000 001111 1122223446799999999 77889999999
Q ss_pred HHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 285 TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 285 ~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
.+++++.++. ..+..||++||..+.+..
T Consensus 210 ~l~~~l~~l~----~~g~tilisSH~l~e~~~ 237 (340)
T PRK13536 210 LIWERLRSLL----ARGKTILLTTHFMEEAER 237 (340)
T ss_pred HHHHHHHHHH----hCCCEEEEECCCHHHHHH
Confidence 9999998873 236789999999887754
No 270
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.69 E-value=7e-08 Score=91.61 Aligned_cols=114 Identities=25% Similarity=0.404 Sum_probs=78.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh--------hhhh----------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------QKYI---------------------- 236 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~--------~~~~---------------------- 236 (419)
++.+.++..+++.||+|+|||||++.++.-+ ....+.+++..+. .+.+
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evaf 103 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAF 103 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhh
Confidence 3456778899999999999999999999854 3344555554321 0101
Q ss_pred -----chhH----HHH--------------------------HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHH
Q 014743 237 -----GEGS----RMV--------------------------RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 237 -----g~~~----~~i--------------------------~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
|... ..+ |-.++.+....|.||++|| ++++.|+.
T Consensus 104 g~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE-----------Pta~LD~~ 172 (235)
T COG1122 104 GLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE-----------PTAGLDPK 172 (235)
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC-----------CCCCCCHH
Confidence 1111 111 2223334456799999999 77889999
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
..+.+.+++.++. ...+..+|++||+.+.+..
T Consensus 173 ~~~~l~~~l~~L~---~~~~~tii~~tHd~~~~~~ 204 (235)
T COG1122 173 GRRELLELLKKLK---EEGGKTIIIVTHDLELVLE 204 (235)
T ss_pred HHHHHHHHHHHHH---hcCCCeEEEEeCcHHHHHh
Confidence 9999999998884 3446789999999887654
No 271
>PRK06921 hypothetical protein; Provisional
Probab=98.69 E-value=1.2e-07 Score=91.76 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc----CCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEeccccc-ccc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS-IGS 268 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~-l~~ 268 (419)
...+++|+||||||||+|+.++|+++ +..++.+...+++...... .......+.. .....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~--~~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNR--MKKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHH--hcCCCEEEEeccccccCC
Confidence 46789999999999999999999875 4566777766665443211 1111222222 23567999999944 211
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 269 ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 269 ~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
. ..........+..+++..- ..+..+|+|||.+
T Consensus 193 ~------e~~t~~~~~~lf~iin~R~----~~~k~tIitsn~~ 225 (266)
T PRK06921 193 K------PRATEWQIEQMYSVLNYRY----LNHKPILISSELT 225 (266)
T ss_pred C------ccCCHHHHHHHHHHHHHHH----HCCCCEEEECCCC
Confidence 1 1122333456777776542 1223357788863
No 272
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.68 E-value=6.6e-08 Score=95.88 Aligned_cols=110 Identities=23% Similarity=0.260 Sum_probs=73.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch------------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL------------------------------------ 231 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l------------------------------------ 231 (419)
+.+..+..+.|.||+||||||+.|.||+-. ...-+.+++.+.
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~ 103 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR 103 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence 345777889999999999999999999732 344555544322
Q ss_pred -----------------------hhhhhchhHHHHHHHH--HHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHH
Q 014743 232 -----------------------VQKYIGEGSRMVRELF--VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 286 (419)
Q Consensus 232 -----------------------~~~~~g~~~~~i~~lf--~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l 286 (419)
..+++.+..+.-++-. ..|.-..|+|++||| |.+..|...+..+
T Consensus 104 ~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE-----------PlSnLDa~lR~~m 172 (338)
T COG3839 104 GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE-----------PLSNLDAKLRVLM 172 (338)
T ss_pred CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC-----------chhHhhHHHHHHH
Confidence 1223333333333333 344457899999999 6666777777777
Q ss_pred HHHHHHccccccCCCeEEEEEeCCcch
Q 014743 287 LELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 287 ~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
...+..+. ..-++++|-.||+..+
T Consensus 173 r~ei~~lh---~~l~~T~IYVTHDq~E 196 (338)
T COG3839 173 RSEIKKLH---ERLGTTTIYVTHDQVE 196 (338)
T ss_pred HHHHHHHH---HhcCCcEEEEcCCHHH
Confidence 76666653 3446778888887654
No 273
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=1.1e-07 Score=95.83 Aligned_cols=112 Identities=25% Similarity=0.229 Sum_probs=73.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.+.++..+.|.||+|||||||.++||+.. ...-+.+++.++.
T Consensus 25 l~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (356)
T PRK11650 25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR 104 (356)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc
Confidence 456777889999999999999999999853 2233444332110
Q ss_pred ------------------------hhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHH
Q 014743 233 ------------------------QKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 286 (419)
Q Consensus 233 ------------------------~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l 286 (419)
.+++....+.. |-.+..|....|.||++|| |.++.|...+..+
T Consensus 105 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE-----------P~s~LD~~~r~~l 173 (356)
T PRK11650 105 GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE-----------PLSNLDAKLRVQM 173 (356)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHH
Confidence 00111111111 2222334446799999999 7778899998888
Q ss_pred HHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 287 LELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 287 ~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.+.|..+. ...++.+|++||..+.+.
T Consensus 174 ~~~l~~l~---~~~g~tii~vTHd~~ea~ 199 (356)
T PRK11650 174 RLEIQRLH---RRLKTTSLYVTHDQVEAM 199 (356)
T ss_pred HHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 88887763 234688999999887553
No 274
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.68 E-value=1.5e-07 Score=85.95 Aligned_cols=111 Identities=25% Similarity=0.384 Sum_probs=77.5
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhhh----------------------------h----
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQK----------------------------Y---- 235 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~~----------------------------~---- 235 (419)
|....+.-+-+.||+|.||||+.|.||.-+ +...+.+++-+.... |
T Consensus 23 F~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L 102 (245)
T COG4555 23 FEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARL 102 (245)
T ss_pred EEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHH
Confidence 345677889999999999999999999854 444555554322110 1
Q ss_pred ----------------------------hchhHHHHH--HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 236 ----------------------------IGEGSRMVR--ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 236 ----------------------------~g~~~~~i~--~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
+|+.....+ -..+.|.-+.|+|++||| |.++.|-...+.
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE-----------P~sGLDi~~~r~ 171 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE-----------PTSGLDIRTRRK 171 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC-----------CCCCccHHHHHH
Confidence 111111122 223334458899999999 778899888899
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+..++.++ +..+..||++||...++.
T Consensus 172 ~~dfi~q~----k~egr~viFSSH~m~Eve 197 (245)
T COG4555 172 FHDFIKQL----KNEGRAVIFSSHIMQEVE 197 (245)
T ss_pred HHHHHHHh----hcCCcEEEEecccHHHHH
Confidence 99999887 456788999999887663
No 275
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=2e-07 Score=86.68 Aligned_cols=51 Identities=18% Similarity=0.376 Sum_probs=40.3
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.++++|| |+++.|......+.+++..+. ..+..||++||+++.+.
T Consensus 142 al~~~p~~lllDE-----------P~~~LD~~~~~~~~~~l~~~~----~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 142 AVIHDPELLILDE-----------PFSGLDPVNVELLKDVIRELA----RAGKTVILSTHQMELVE 192 (210)
T ss_pred HHhcCCCEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEECCCHHHHH
Confidence 3446799999999 677899999999999998763 23578999999887654
No 276
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.67 E-value=1.9e-07 Score=86.98 Aligned_cols=51 Identities=27% Similarity=0.516 Sum_probs=40.1
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.|+++|| |+++.|+.....+.+++.++. ..+..||++||+++.+.
T Consensus 150 al~~~p~llllDE-----------Pt~~LD~~~~~~~~~~l~~~~----~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 150 AIVNSPTILIADE-----------PTGNLDPDTTWEIMNLLKKIN----KAGTTVVVATHAKELVD 200 (214)
T ss_pred HHHcCCCEEEEeC-----------CCCcCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHH
Confidence 3346799999999 777899999999999998763 23567999999877654
No 277
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.67 E-value=1.3e-07 Score=96.07 Aligned_cols=113 Identities=23% Similarity=0.279 Sum_probs=73.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~---------------------------------- 232 (419)
++.+.++..+.|.||+|||||||.++||+.. ...-+.+++.++.
T Consensus 34 sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 113 (375)
T PRK09452 34 DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRM 113 (375)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhh
Confidence 3456778889999999999999999999743 2233333332210
Q ss_pred -------------------------hhhhchhHHHHH--HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 233 -------------------------QKYIGEGSRMVR--ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 233 -------------------------~~~~g~~~~~i~--~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
.+++....+..+ -.+..|....|.|+++|| |.++.|...+..
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE-----------P~s~LD~~~r~~ 182 (375)
T PRK09452 114 QKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE-----------SLSALDYKLRKQ 182 (375)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCcCCHHHHHH
Confidence 001111111112 222233446799999999 677889988888
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+.+.|..+. ...++.+|++||+.+.+.
T Consensus 183 l~~~L~~l~---~~~g~tiI~vTHd~~ea~ 209 (375)
T PRK09452 183 MQNELKALQ---RKLGITFVFVTHDQEEAL 209 (375)
T ss_pred HHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 888887763 234678899999987643
No 278
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.67 E-value=1.7e-07 Score=87.31 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=40.6
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.++++|| |+++.|+.....+.+++.++. ...+..||++||.++.+.
T Consensus 144 al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tvi~~sH~~~~~~ 195 (213)
T cd03301 144 AIVREPKVFLMDE-----------PLSNLDAKLRVQMRAELKRLQ---QRLGTTTIYVTHDQVEAM 195 (213)
T ss_pred HHhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHH
Confidence 3446799999999 777899999999999988763 223577999999887654
No 279
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=2.5e-07 Score=86.82 Aligned_cols=52 Identities=23% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.++++|| |+++.|+.....+.+++.++. ...+..||++||+++.+.
T Consensus 145 al~~~p~lllLDE-----------Pt~~LD~~~~~~~~~~l~~~~---~~~~~tiii~sH~~~~~~ 196 (220)
T cd03293 145 ALAVDPDVLLLDE-----------PFSALDALTREQLQEELLDIW---RETGKTVLLVTHDIDEAV 196 (220)
T ss_pred HHHcCCCEEEECC-----------CCCCCCHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHHHH
Confidence 3346799999999 777899999999999988762 233567899999987654
No 280
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.66 E-value=1.4e-07 Score=95.05 Aligned_cols=112 Identities=25% Similarity=0.327 Sum_probs=74.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.+.++..+.|.||+|||||||.++||+.. ...-+.+++..+.
T Consensus 25 ~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (353)
T TIGR03265 25 LSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR 104 (353)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc
Confidence 445678889999999999999999999854 3334444432210
Q ss_pred ------------------------hhhhchhHHHHH--HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHH
Q 014743 233 ------------------------QKYIGEGSRMVR--ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 286 (419)
Q Consensus 233 ------------------------~~~~g~~~~~i~--~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l 286 (419)
.+++.+..+..+ -.+..|....|.++++|| |.++.|...+..+
T Consensus 105 ~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDE-----------P~s~LD~~~r~~l 173 (353)
T TIGR03265 105 GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDE-----------PLSALDARVREHL 173 (353)
T ss_pred CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHHHH
Confidence 001111111112 222333446799999999 6777899988888
Q ss_pred HHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 287 LELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 287 ~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.+.|..+. ...++.+|++||+.+.+.
T Consensus 174 ~~~L~~l~---~~~~~tvi~vTHd~~ea~ 199 (353)
T TIGR03265 174 RTEIRQLQ---RRLGVTTIMVTHDQEEAL 199 (353)
T ss_pred HHHHHHHH---HhcCCEEEEEcCCHHHHH
Confidence 88887763 234678999999987653
No 281
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.65 E-value=2.6e-07 Score=86.00 Aligned_cols=49 Identities=16% Similarity=0.405 Sum_probs=39.4
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
...|.++++|| |+++.|......+.+++.++. ..+..||++||+++.+.
T Consensus 151 ~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tvi~~sh~~~~~~ 199 (213)
T cd03262 151 AMNPKVMLFDE-----------PTSALDPELVGEVLDVMKDLA----EEGMTMVVVTHEMGFAR 199 (213)
T ss_pred hcCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHH
Confidence 36799999999 777899999999999998873 23567888999887653
No 282
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=2.2e-07 Score=86.67 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=39.9
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.|+++|| |+++.|......+.+++.++. ...+..||++||+++.+.
T Consensus 145 l~~~p~~lllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~ 195 (213)
T cd03259 145 LAREPSLLLLDE-----------PLSALDAKLREELREELKELQ---RELGITTIYVTHDQEEAL 195 (213)
T ss_pred HhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHHHH
Confidence 346799999999 777899999999999998762 223567899999887654
No 283
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.65 E-value=2.5e-07 Score=84.34 Aligned_cols=111 Identities=20% Similarity=0.258 Sum_probs=74.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh--------hh---h----------h-c-h------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------QK---Y----------I-G-E------ 238 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~--------~~---~----------~-g-~------ 238 (419)
+.+.++..+.|.||+|+|||||++.|++.. ...-+.+++.++. .. | . . .
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~ 100 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHH
Confidence 456778889999999999999999999854 2233333332110 00 0 0 0 0
Q ss_pred ----hHHH--HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 239 ----GSRM--VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 239 ----~~~~--i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
..+. .+-.+..|....|.|+++|| |.++.|+.....+.+++..+. ..+..+|++||+.+
T Consensus 101 ~~~~LS~G~~qrl~la~al~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~ 165 (182)
T cd03215 101 LSSLLSGGNQQKVVLARWLARDPRVLILDE-----------PTRGVDVGAKAEIYRLIRELA----DAGKAVLLISSELD 165 (182)
T ss_pred HHhhcCHHHHHHHHHHHHHccCCCEEEECC-----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 0111 12234455567899999999 677899999999999998773 23567899999876
Q ss_pred hhh
Q 014743 313 ILD 315 (419)
Q Consensus 313 ~ld 315 (419)
.+.
T Consensus 166 ~~~ 168 (182)
T cd03215 166 ELL 168 (182)
T ss_pred HHH
Confidence 554
No 284
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.65 E-value=2.6e-07 Score=86.20 Aligned_cols=50 Identities=28% Similarity=0.586 Sum_probs=39.6
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.|+++|| |+++.|+.....+.+++.++. ..+..||++||+++.+.
T Consensus 152 l~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 152 IVNSPPLLLADE-----------PTGNLDPDLSERILDLLKRLN----KRGTTVIVATHDLSLVD 201 (214)
T ss_pred HhCCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHH
Confidence 346799999999 677899999999999998762 23567899999877654
No 285
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.65 E-value=2.1e-07 Score=86.54 Aligned_cols=50 Identities=28% Similarity=0.499 Sum_probs=39.8
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.++++|| |+++.|+.....+.++|.++. ..+..||++||+++.+.
T Consensus 149 l~~~p~llllDE-----------Pt~~LD~~~~~~~~~~l~~~~----~~~~tvi~~sH~~~~~~ 198 (211)
T cd03225 149 LAMDPDILLLDE-----------PTAGLDPAGRRELLELLKKLK----AEGKTIIIVTHDLDLLL 198 (211)
T ss_pred HhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHH
Confidence 346799999999 777899999999999998763 23577999999877654
No 286
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.65 E-value=2.2e-07 Score=87.58 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=72.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch------------------h---hh------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL------------------V---QK------------ 234 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l------------------~---~~------------ 234 (419)
+.+.++..+.|.||+|+|||||+++|++.. ...-+.+++... + ..
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 122 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK 122 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 456788889999999999999999999853 222232222110 0 00
Q ss_pred ----------------hhchhHHHHH--HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc
Q 014743 235 ----------------YIGEGSRMVR--ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF 296 (419)
Q Consensus 235 ----------------~~g~~~~~i~--~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~ 296 (419)
.++...+..+ -.+..|....|.+|++|| |+++.|......+.+++.++.
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE-----------P~~gLD~~~~~~~~~~l~~~~-- 189 (224)
T cd03220 123 IDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE-----------VLAVGDAAFQEKCQRRLRELL-- 189 (224)
T ss_pred HHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH--
Confidence 0001011111 122334446799999999 677889988888988888763
Q ss_pred ccCCCeEEEEEeCCcchhhH
Q 014743 297 EASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 297 ~~~~~v~VI~tTn~~~~ld~ 316 (419)
..+..||++||..+.+..
T Consensus 190 --~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 190 --KQGKTVILVSHDPSSIKR 207 (224)
T ss_pred --hCCCEEEEEeCCHHHHHH
Confidence 235678999998876543
No 287
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.65 E-value=2.6e-07 Score=87.32 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=41.1
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.+|++|| |+++.|......+.+++.++. ..+..||++||+++.+..
T Consensus 147 al~~~p~llllDE-----------Pt~~LD~~~~~~~~~~l~~~~----~~~~tii~~sH~~~~~~~ 198 (232)
T cd03218 147 ALATNPKFLLLDE-----------PFAGVDPIAVQDIQKIIKILK----DRGIGVLITDHNVRETLS 198 (232)
T ss_pred HHhcCCCEEEecC-----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 3346799999999 777899999999999998773 235679999998876544
No 288
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.65 E-value=3e-07 Score=89.32 Aligned_cols=141 Identities=21% Similarity=0.336 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCc---eEEEeCcchhhhhhchhHHHHHHHHHHH----H-------hhCCceE
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCT---FIRVSGSELVQKYIGEGSRMVRELFVMA----R-------EHAPSII 258 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~---~i~v~~s~l~~~~~g~~~~~i~~lf~~a----~-------~~~psVl 258 (419)
.....+||+||+|||||++++.+-..+... ...+.++..- +...++.+.+.. + .....|+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 346789999999999999999887765432 2334444221 112222222211 0 1223599
Q ss_pred EecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC-------CCeEEEEEeCCcc---hhhHHhcCCCceeEEE
Q 014743 259 FMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS-------NKIKVLMATNRID---ILDQALLRPGRIDRKI 328 (419)
Q Consensus 259 ~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~-------~~v~VI~tTn~~~---~ld~allr~gRfd~~I 328 (419)
||||+..-.+.. .+.......|.|+++...-++.. .++.+|+|++... .+++.|+| .|- ++
T Consensus 105 fiDDlN~p~~d~------ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~ 175 (272)
T PF12775_consen 105 FIDDLNMPQPDK------YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-IL 175 (272)
T ss_dssp EEETTT-S---T------TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EE
T ss_pred EecccCCCCCCC------CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EE
Confidence 999987733222 22233456677777764333322 3788888887532 58889998 774 89
Q ss_pred EcCCCCHHHHHHHHHHHHhh
Q 014743 329 EFPNPNEESRLDILKIHSRR 348 (419)
Q Consensus 329 ~~~~P~~~~r~~Il~~~~~~ 348 (419)
.++.|+.+....|+...+..
T Consensus 176 ~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 176 NIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E----TCCHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHHHhh
Confidence 99999999999998876653
No 289
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.64 E-value=3.8e-07 Score=84.10 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=72.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--C--CceEEEeCcchhh---------------hhhc-------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--D--CTFIRVSGSELVQ---------------KYIG------------- 237 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~--~~~i~v~~s~l~~---------------~~~g------------- 237 (419)
+.+.++..+.|.||+|+|||||++.|++.. . ..-+.+++.++.. .+.+
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~ 109 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL 109 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence 446788899999999999999999999865 2 2333333322100 0000
Q ss_pred -hhHHH--HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 238 -EGSRM--VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 238 -~~~~~--i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
...+. .+-.+..|....|.|+++|| |.++.|......+.++|.++. ..+..||++||.+.
T Consensus 110 ~~LS~G~~qrv~laral~~~p~illlDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~ 172 (194)
T cd03213 110 RGLSGGERKRVSIALELVSNPSLLFLDE-----------PTSGLDSSSALQVMSLLRRLA----DTGRTIICSIHQPS 172 (194)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCch
Confidence 11111 22344455567899999999 667789999999999988763 23567889999875
No 290
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=1.9e-07 Score=94.91 Aligned_cols=122 Identities=21% Similarity=0.263 Sum_probs=77.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~---------------------------------- 232 (419)
++.+.++..+.|.||+|||||||.++||+.. ...-+.+++..+.
T Consensus 39 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 118 (377)
T PRK11607 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQ 118 (377)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 3456778889999999999999999999743 2233333332110
Q ss_pred -------------------------hhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 233 -------------------------QKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 233 -------------------------~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
.+++....+.. +-.+..|....|.||++|| +.++.|...+..
T Consensus 119 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE-----------P~s~LD~~~r~~ 187 (377)
T PRK11607 119 DKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE-----------PMGALDKKLRDR 187 (377)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHH
Confidence 00111111111 2222334446799999999 677788888888
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhhH-----HhcCCCce
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILDQ-----ALLRPGRI 324 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~-----allr~gRf 324 (419)
+.+.+..+. ...++.+|++||+.+.+.. .+++.||+
T Consensus 188 l~~~l~~l~---~~~g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 188 MQLEVVDIL---ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred HHHHHHHHH---HhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 877776552 2235789999999886543 34555655
No 291
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.64 E-value=2.5e-07 Score=85.97 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=40.4
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.++++|| |+++.|......+.+++.++. ..+..||++||+++.+..
T Consensus 140 al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 140 ALLGNPDLLILDE-----------PTNGLDPDGIKELRELILSLR----DQGITVLISSHLLSEIQK 191 (208)
T ss_pred HHhcCCCEEEECC-----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHH
Confidence 3346799999999 777899999999999888763 235678999998876643
No 292
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.64 E-value=2.8e-07 Score=86.20 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=39.9
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.+|++|| |+++.|+.....+.++|.++. ..+..||++||+++.+.
T Consensus 151 l~~~p~illlDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~~tH~~~~~~ 200 (218)
T cd03266 151 LVHDPPVLLLDE-----------PTTGLDVMATRALREFIRQLR----ALGKCILFSTHIMQEVE 200 (218)
T ss_pred HhcCCCEEEEcC-----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHH
Confidence 346799999999 677899999999999998763 23567999999887654
No 293
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=2.7e-07 Score=84.84 Aligned_cols=108 Identities=22% Similarity=0.222 Sum_probs=72.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc----CCceEEEeCcchhh----------h----hhc--------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGSELVQ----------K----YIG-------------- 237 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~s~l~~----------~----~~g-------------- 237 (419)
+.+.++..+.|.||+|+|||||++.|++.. ...-+.+++.++.. . +.+
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 107 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR 107 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh
Confidence 446778889999999999999999999732 23334444322100 0 000
Q ss_pred hhHHH--HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 238 EGSRM--VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 238 ~~~~~--i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
...+. .+-.+..|....|.|+++|| |.++.|......+.+++.++. ..+..||++||+++
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiiivtH~~~ 169 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDE-----------PTSGLDSQAAYNIVRFLKKLA----DSGQAILCTIHQPS 169 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH----HcCCEEEEEEcCCh
Confidence 11111 12334455567899999999 667789999999999988763 23567899999876
No 294
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.63 E-value=2.1e-06 Score=91.64 Aligned_cols=194 Identities=14% Similarity=0.127 Sum_probs=124.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchhhhhhchh--HHHH--------HHHHHHHHhhCCceEEeccc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQKYIGEG--SRMV--------RELFVMAREHAPSIIFMDEI 263 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~~~~~g~~--~~~i--------~~lf~~a~~~~psVl~iDEi 263 (419)
.|++|.|++|||||+++++++.-+. .+|+.+.-+--....+|.. +..+ .-++..| ...|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 6899999999999999999999764 4776654443333444432 1100 0111111 2359999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHcc------cc--ccCCCeEEEEEeCCc---chhhHHhcCCCceeEEEEcCC
Q 014743 264 DSIGSARMESGSGNGDSEVQRTMLELLNQLD------GF--EASNKIKVLMATNRI---DILDQALLRPGRIDRKIEFPN 332 (419)
Q Consensus 264 D~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~------~~--~~~~~v~VI~tTn~~---~~ld~allr~gRfd~~I~~~~ 332 (419)
.. .++.+...|.+-+.+.. +. ....+.++|++-|.. ..+++.++. ||+-.+.++.
T Consensus 103 n~------------~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~ 168 (584)
T PRK13406 103 ER------------LEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDG 168 (584)
T ss_pred cc------------CCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCC
Confidence 77 45678888888887642 21 112356677763322 348889999 9999999998
Q ss_pred CCHHHH-------HHHHHHH--HhhcccCCCCCHHHHHHHc--CCC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 333 PNEESR-------LDILKIH--SRRMNLMRGIDLKKIAEKM--NGA-SGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 333 P~~~~r-------~~Il~~~--~~~~~~~~~~dl~~la~~t--~G~-sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
|+..+. ..|.... +.+..+. +..+..++..+ -|. |.+--..+++.|.-.|.-+++..|+.+|+..|+
T Consensus 169 ~~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa 247 (584)
T PRK13406 169 LALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAA 247 (584)
T ss_pred CChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 876542 2333322 1222221 11233333322 355 666666788888888888999999999999999
Q ss_pred HHHHhhh
Q 014743 401 AKVMKKE 407 (419)
Q Consensus 401 ~~v~~~~ 407 (419)
.-++...
T Consensus 248 ~lvL~hR 254 (584)
T PRK13406 248 RLVLAPR 254 (584)
T ss_pred HHHHHhh
Confidence 9998643
No 295
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.63 E-value=2e-07 Score=93.49 Aligned_cols=53 Identities=23% Similarity=0.500 Sum_probs=42.3
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| ++++.|+.....++++|..+. ...++.||++||..+.+..
T Consensus 154 AL~~~P~iLLlDE-----------Pts~LD~~t~~~i~~lL~~l~---~~~g~tiiliTH~~~~v~~ 206 (343)
T TIGR02314 154 ALASNPKVLLCDE-----------ATSALDPATTQSILELLKEIN---RRLGLTILLITHEMDVVKR 206 (343)
T ss_pred HHHhCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 4456799999999 677899999999999998873 2336889999999887643
No 296
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.63 E-value=4e-07 Score=85.95 Aligned_cols=52 Identities=13% Similarity=0.334 Sum_probs=41.1
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.|+++|| |+++.|......+.++|.++. ...+..||++||..+.+..
T Consensus 146 l~~~p~illlDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~~ 197 (230)
T TIGR03410 146 LVTRPKLLLLDE-----------PTEGIQPSIIKDIGRVIRRLR---AEGGMAILLVEQYLDFARE 197 (230)
T ss_pred HhcCCCEEEecC-----------CcccCCHHHHHHHHHHHHHHH---HcCCcEEEEEeCCHHHHHH
Confidence 345799999999 677899999999999998763 2236789999999886654
No 297
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.63 E-value=2.7e-07 Score=86.48 Aligned_cols=48 Identities=15% Similarity=0.342 Sum_probs=39.1
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
..|.++++|| |+++.|......+.++|.++. ..+..||++||+++.+.
T Consensus 149 ~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~ 196 (222)
T cd03224 149 SRPKLLLLDE-----------PSEGLAPKIVEEIFEAIRELR----DEGVTILLVEQNARFAL 196 (222)
T ss_pred cCCCEEEECC-----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHH
Confidence 5799999999 677899999999999998763 23578999999887654
No 298
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.62 E-value=1.9e-07 Score=86.59 Aligned_cols=113 Identities=17% Similarity=0.334 Sum_probs=68.3
Q ss_pred hhcCCCCCCeEEEEcCCCChHHHHHHHHHhc-----cCCce-------------EEEeCcchh----hhhhchhHHHHHH
Q 014743 188 ESLGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTF-------------IRVSGSELV----QKYIGEGSRMVRE 245 (419)
Q Consensus 188 ~~~gi~~p~~iLL~GPpGtGKT~LakalA~~-----~~~~~-------------i~v~~s~l~----~~~~g~~~~~i~~ 245 (419)
..+.+..++.++|.||+|+||||++|.++.. .+.++ ..+...+-+ +.+ ......+..
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~-~~e~~~~~~ 96 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYF-YAELRRLKE 96 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChH-HHHHHHHHH
Confidence 3455566678999999999999999999852 23221 111111100 111 111234566
Q ss_pred HHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHH-HHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 246 LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR-TMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 246 lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~-~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
+++.+....|++|++||. ..+.++.... .+..++..+. ..+..+|++||..+.+..
T Consensus 97 iL~~~~~~~p~llllDEp-----------~~glD~~~~~~l~~~ll~~l~----~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 97 IVEKAKKGEPVLFLLDEI-----------FKGTNSRERQAASAAVLKFLK----NKNTIGIISTHDLELADL 153 (199)
T ss_pred HHHhccCCCCeEEEEecc-----------cCCCCHHHHHHHHHHHHHHHH----HCCCEEEEEcCcHHHHHh
Confidence 666655558999999993 3445555443 3345666552 236789999999886644
No 299
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.62 E-value=3.2e-07 Score=86.00 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=38.7
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
...|.|+++|| |+++.|......+.++|..+. ...+..||++||+++.+
T Consensus 157 ~~~p~illlDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 157 VNQPSLVLADE-----------PTGNLDNNNAKIIFDLMLELN---RELNTSFLVVTHDLELA 205 (221)
T ss_pred hCCCCEEEEeC-----------CCCcCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 46799999999 777899999999999988762 22356789999987654
No 300
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=2.9e-07 Score=87.10 Aligned_cols=51 Identities=18% Similarity=0.494 Sum_probs=40.2
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.++++|| |+++.|......+.+++.++. ...+..||++||+++.+..
T Consensus 156 ~~~p~lllLDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tvii~sH~~~~~~~ 206 (233)
T cd03258 156 ANNPKVLLCDE-----------ATSALDPETTQSILALLRDIN---RELGLTIVLITHEMEVVKR 206 (233)
T ss_pred hcCCCEEEecC-----------CCCcCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 36799999999 677899999999999888762 2336789999999876543
No 301
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.62 E-value=3.4e-07 Score=84.91 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=40.6
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.|+++|| |+++.|......+.++|.++. ..+..||++||+.+.++.
T Consensus 143 al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 143 LWLTRAPLWILDE-----------PFTAIDKQGVARLEALLAQHA----EQGGMVILTTHQDLPVAS 194 (204)
T ss_pred HHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH----HCCCEEEEEecChhhhcc
Confidence 3446799999999 667789999999999888762 235678999998877654
No 302
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=3e-07 Score=86.25 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=41.0
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.++++|| |+++.|......+.+++.++. ...+..||++||+.+.+..
T Consensus 145 al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tvi~~tH~~~~~~~ 197 (220)
T cd03265 145 SLVHRPEVLFLDE-----------PTIGLDPQTRAHVWEYIEKLK---EEFGMTILLTTHYMEEAEQ 197 (220)
T ss_pred HHhcCCCEEEEcC-----------CccCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 3446799999999 777899999999999888763 2235678999998876644
No 303
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.62 E-value=3.9e-07 Score=83.96 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=71.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh----------hh-------------------hhc
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------QK-------------------YIG 237 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------~~-------------------~~g 237 (419)
++.+.++..+.|.||+|+|||||+++|++.. ...-+.+++.++. .. ..+
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~ 99 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN 99 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc
Confidence 3456788899999999999999999999853 2222333221110 00 000
Q ss_pred -----------------------hhHHH--HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHH
Q 014743 238 -----------------------EGSRM--VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ 292 (419)
Q Consensus 238 -----------------------~~~~~--i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~ 292 (419)
...+. .+-.+..|....|.++++|| ++++.|+.....+.+++..
T Consensus 100 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDE-----------P~~~LD~~~~~~l~~~l~~ 168 (195)
T PRK13541 100 SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE-----------VETNLSKENRDLLNNLIVM 168 (195)
T ss_pred cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHH
Confidence 00000 11122223346799999999 6667888888888888875
Q ss_pred ccccccCCCeEEEEEeCCcchhhH
Q 014743 293 LDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 293 l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
.. ..+..||++||+++.+..
T Consensus 169 ~~----~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 169 KA----NSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HH----hCCCEEEEEeCCccccch
Confidence 42 235678999998876654
No 304
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.62 E-value=1.7e-07 Score=82.23 Aligned_cols=112 Identities=21% Similarity=0.301 Sum_probs=68.3
Q ss_pred EEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh----------------------hhch--hHHHHHHHHHHH
Q 014743 198 VLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK----------------------YIGE--GSRMVRELFVMA 250 (419)
Q Consensus 198 iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~----------------------~~g~--~~~~i~~lf~~a 250 (419)
++++||||+|||+++..++... +..++.++....... +... .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998865 445555555332211 0001 111122344556
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
....|.+|+|||+..+....... ..+.+....+.+..++... ...++.+|++++.....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~----~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERA----RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHH----hcCCceEEEEEecCCcc
Confidence 67789999999999876442110 0123344556666666555 33578888888876543
No 305
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=3.1e-07 Score=88.39 Aligned_cols=53 Identities=26% Similarity=0.276 Sum_probs=41.1
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.+|++|| |+++.|+.....+.++|.++. ...+..||++||+++.+..
T Consensus 142 al~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~L~~~~---~~~g~tviivsH~~~~~~~ 194 (255)
T PRK11248 142 ALAANPQLLLLDE-----------PFGALDAFTREQMQTLLLKLW---QETGKQVLLITHDIEEAVF 194 (255)
T ss_pred HHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 3346799999999 777899999999999988762 2235678999999886643
No 306
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.61 E-value=4.6e-07 Score=87.69 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=73.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCc--------chh---------h---hhhc---------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS--------ELV---------Q---KYIG--------- 237 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s--------~l~---------~---~~~g--------- 237 (419)
++.+.++..+.|.||+|+|||||+++|++.. ..+-+.+++. .+. . ...+
T Consensus 44 s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 123 (264)
T PRK13546 44 SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAM 123 (264)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 3456788889999999999999999999864 1122222210 000 0 0001
Q ss_pred -------------------hhHHH--HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc
Q 014743 238 -------------------EGSRM--VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF 296 (419)
Q Consensus 238 -------------------~~~~~--i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~ 296 (419)
...++ .+-.+..|....|.|+++|| |+++.|+.....+.+++..+.
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDE-----------Pt~gLD~~~~~~l~~~L~~~~-- 190 (264)
T PRK13546 124 TPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE-----------ALSVGDQTFAQKCLDKIYEFK-- 190 (264)
T ss_pred HHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC-----------ccccCCHHHHHHHHHHHHHHH--
Confidence 00111 11223344456799999999 667789888888999888762
Q ss_pred ccCCCeEEEEEeCCcchhhH
Q 014743 297 EASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 297 ~~~~~v~VI~tTn~~~~ld~ 316 (419)
..+..||++||..+.+..
T Consensus 191 --~~g~tiIiisH~~~~i~~ 208 (264)
T PRK13546 191 --EQNKTIFFVSHNLGQVRQ 208 (264)
T ss_pred --HCCCEEEEEcCCHHHHHH
Confidence 246788999998887654
No 307
>PRK10908 cell division protein FtsE; Provisional
Probab=98.61 E-value=4.2e-07 Score=85.37 Aligned_cols=50 Identities=28% Similarity=0.561 Sum_probs=39.7
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.++++|| |+++.|......+.+++.++. ..+..||++||+++.+..
T Consensus 153 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 153 VNKPAVLLADE-----------PTGNLDDALSEGILRLFEEFN----RVGVTVLMATHDIGLISR 202 (222)
T ss_pred HcCCCEEEEeC-----------CCCcCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 36799999999 777889988888999888763 235688999998876543
No 308
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.60 E-value=4e-07 Score=84.32 Aligned_cols=112 Identities=19% Similarity=0.158 Sum_probs=72.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.+.++..+.|.||+|+|||||.+.|++.. ...-+.+++..+.
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 100 (201)
T cd03231 21 FTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD 100 (201)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc
Confidence 446788889999999999999999999753 1222222221100
Q ss_pred -------------------hhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHH
Q 014743 233 -------------------QKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 291 (419)
Q Consensus 233 -------------------~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~ 291 (419)
.+++....+.. +-.+..|....|.+|++|| |+++.|......+.+++.
T Consensus 101 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~ 169 (201)
T cd03231 101 HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE-----------PTTALDKAGVARFAEAMA 169 (201)
T ss_pred ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCCCCHHHHHHHHHHHH
Confidence 00000111111 2222334446799999999 777899999999999887
Q ss_pred HccccccCCCeEEEEEeCCcchhhH
Q 014743 292 QLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 292 ~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
++. ..+..+|++||++..++.
T Consensus 170 ~~~----~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 170 GHC----ARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred HHH----hCCCEEEEEecCchhhhh
Confidence 762 235678899998877655
No 309
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.60 E-value=3.9e-07 Score=85.68 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=41.4
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.|+++|| |+++.|......+.++|.++. ..+..||++||+++.+..
T Consensus 138 al~~~p~llllDE-----------P~~~LD~~~~~~l~~~L~~~~----~~~~tiii~sH~~~~~~~ 189 (223)
T TIGR03740 138 ALLNHPKLLILDE-----------PTNGLDPIGIQELRELIRSFP----EQGITVILSSHILSEVQQ 189 (223)
T ss_pred HHhcCCCEEEECC-----------CccCCCHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHH
Confidence 4446799999999 777899999999999998763 235679999999887654
No 310
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.60 E-value=3.2e-07 Score=90.48 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=41.9
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.+|++|| |+++.|+.....+.++|.++. ..+..||++||+++.+..
T Consensus 149 al~~~p~lllLDE-----------Pt~gLD~~~~~~l~~~l~~~~----~~g~til~~sH~~~~~~~ 200 (303)
T TIGR01288 149 ALINDPQLLILDE-----------PTTGLDPHARHLIWERLRSLL----ARGKTILLTTHFMEEAER 200 (303)
T ss_pred HHhcCCCEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH----hCCCEEEEECCCHHHHHH
Confidence 3446799999999 778899999999999998873 236789999999886643
No 311
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.60 E-value=3e-07 Score=92.92 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=41.5
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| +.++.|+...+.+.+++..+. ...+..||++||+.+.+..
T Consensus 143 AL~~~p~iLLlDE-----------P~saLD~~~r~~l~~~l~~l~---~~~~~Tii~vTHd~~ea~~ 195 (363)
T TIGR01186 143 ALAAEPDILLMDE-----------AFSALDPLIRDSMQDELKKLQ---ATLQKTIVFITHDLDEAIR 195 (363)
T ss_pred HHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 4456799999999 677899999999998888763 2335779999999886543
No 312
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.60 E-value=4.3e-07 Score=84.12 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=38.3
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
....|.++++|| |+++.|+.....+.+++.++. ..+..||++||+++.
T Consensus 149 l~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~ 196 (206)
T TIGR03608 149 ILKDPPLILADE-----------PTGSLDPKNRDEVLDLLLELN----DEGKTIIIVTHDPEV 196 (206)
T ss_pred HHcCCCEEEEeC-----------CcCCCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHH
Confidence 346799999999 677889999999999998763 235678889998764
No 313
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.59 E-value=4.3e-07 Score=84.92 Aligned_cols=52 Identities=13% Similarity=0.011 Sum_probs=40.5
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
+....|.|+++|| ++++.|......+.+++..+. ..+..||++||..+.+..
T Consensus 151 al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 151 LWLSPAPLWLLDE-----------PYANLDLEGITLVNRMISAHL----RGGGAALVTTHGAYAAPP 202 (214)
T ss_pred HHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----hCCCEEEEEecChhhhhh
Confidence 3446799999999 667789999999999988763 234678899998877654
No 314
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.59 E-value=4e-07 Score=86.36 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=40.7
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.|+++|| |+++.|......+.++|..+. ...+..||++||+++.+.
T Consensus 146 al~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 146 ALLHRPALLLLDE-----------PTVGLDPASRAAIVAHVRALC---RDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHhcCCCEEEEcC-----------CccCCCHHHHHHHHHHHHHHH---HhCCCEEEEEecChhhHh
Confidence 4446799999999 677899999999999888762 123567899999988764
No 315
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.59 E-value=2.7e-07 Score=93.23 Aligned_cols=112 Identities=24% Similarity=0.270 Sum_probs=74.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CC--ceEEEeCcchhh--------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DC--TFIRVSGSELVQ-------------------------------- 233 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~--~~i~v~~s~l~~-------------------------------- 233 (419)
+.+.++..+.|.||+|||||||.++||+.. .. .-+.+++.++..
T Consensus 26 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~ 105 (362)
T TIGR03258 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLR 105 (362)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHH
Confidence 446677889999999999999999999853 33 445554422100
Q ss_pred ---------------------------hhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHH
Q 014743 234 ---------------------------KYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 284 (419)
Q Consensus 234 ---------------------------~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~ 284 (419)
++++..++.. +-.+..|....|.||++|| |.++.|...+.
T Consensus 106 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE-----------P~s~LD~~~r~ 174 (362)
T TIGR03258 106 AQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE-----------PLSALDANIRA 174 (362)
T ss_pred HcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------ccccCCHHHHH
Confidence 0001111111 1222333446799999999 77789999988
Q ss_pred HHHHHHHHccccccCC-CeEEEEEeCCcchhh
Q 014743 285 TMLELLNQLDGFEASN-KIKVLMATNRIDILD 315 (419)
Q Consensus 285 ~l~~lL~~l~~~~~~~-~v~VI~tTn~~~~ld 315 (419)
.+.++|.++. ... ++.+|++||..+.+.
T Consensus 175 ~l~~~l~~l~---~~~~g~til~vTHd~~ea~ 203 (362)
T TIGR03258 175 NMREEIAALH---EELPELTILCVTHDQDDAL 203 (362)
T ss_pred HHHHHHHHHH---HhCCCCEEEEEeCCHHHHH
Confidence 8888887763 222 678999999987653
No 316
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.59 E-value=4.7e-07 Score=84.78 Aligned_cols=50 Identities=18% Similarity=0.381 Sum_probs=40.2
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.++++|| |+++.|+.....+.++|..+. . +..||++||+++.+..
T Consensus 148 l~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sH~~~~~~~ 197 (220)
T cd03263 148 LIGGPSVLLLDE-----------PTSGLDPASRRAIWDLILEVR----K-GRSIILTTHSMDEAEA 197 (220)
T ss_pred HhcCCCEEEECC-----------CCCCCCHHHHHHHHHHHHHHh----c-CCEEEEEcCCHHHHHH
Confidence 346799999999 677889999999999998773 2 3789999999887654
No 317
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.59 E-value=3.5e-07 Score=81.33 Aligned_cols=124 Identities=26% Similarity=0.390 Sum_probs=74.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch-----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------------------- 231 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l----------------------------------- 231 (419)
++.+.++..+++.||+|||||+|.|++|.-. ....+.+.+.++
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~ 102 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQ 102 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchH
Confidence 4557888999999999999999999999742 333333333211
Q ss_pred ------------------------hhhhhchhHHHHHHHHHHHH--hhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 232 ------------------------VQKYIGEGSRMVRELFVMAR--EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 232 ------------------------~~~~~g~~~~~i~~lf~~a~--~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
.++-+.+..++-++....+| ...|.|+++||+-+ ..|+...+.
T Consensus 103 ~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts-----------ALD~~nkr~ 171 (223)
T COG4619 103 IRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS-----------ALDESNKRN 171 (223)
T ss_pred HhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh-----------hcChhhHHH
Confidence 01111122222334444444 35699999999655 344444444
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCC
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 332 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~ 332 (419)
+..++-.. -...++.|+-.|++++.- +| -+|+.|.+.+
T Consensus 172 ie~mi~~~---v~~q~vAv~WiTHd~dqa----~r--ha~k~itl~~ 209 (223)
T COG4619 172 IEEMIHRY---VREQNVAVLWITHDKDQA----IR--HADKVITLQP 209 (223)
T ss_pred HHHHHHHH---hhhhceEEEEEecChHHH----hh--hhheEEEecc
Confidence 44444332 124678999999987652 22 3566666554
No 318
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.59 E-value=6e-07 Score=80.69 Aligned_cols=105 Identities=29% Similarity=0.357 Sum_probs=70.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCc----------chh-----hh----hhchhHHHH--HHH
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGS----------ELV-----QK----YIGEGSRMV--REL 246 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s----------~l~-----~~----~~g~~~~~i--~~l 246 (419)
+.+.++..+.|.||+|+|||||++++++... ..-+.+++. .+. .. +.....+.. +-.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHH
Confidence 4567888899999999999999999998642 222222220 010 00 112222222 334
Q ss_pred HHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 247 FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 247 f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
+..|....|.++++|| |+++.|......+.+++..+ +..+|++||+.+
T Consensus 102 laral~~~p~~lllDE-----------Pt~~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 102 FARLLLHKPKFVFLDE-----------ATSALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHHHcCCCEEEEEC-----------CccccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 4555667899999999 66778888888888888765 256888999864
No 319
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.59 E-value=4.7e-07 Score=82.97 Aligned_cols=48 Identities=23% Similarity=0.488 Sum_probs=38.2
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
....|.+|++|| |+++.|......+.++|.++. ..+..||++||+++.
T Consensus 142 l~~~p~llllDE-----------Pt~~LD~~~~~~~~~~l~~~~----~~~~tili~sH~~~~ 189 (190)
T TIGR01166 142 VAMRPDVLLLDE-----------PTAGLDPAGREQMLAILRRLR----AEGMTVVISTHDVDL 189 (190)
T ss_pred HhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH----HcCCEEEEEeecccc
Confidence 346799999999 777899999999999998773 235678899988754
No 320
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=4.2e-07 Score=86.09 Aligned_cols=52 Identities=23% Similarity=0.427 Sum_probs=40.7
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.|+++|| |+++.|+.....+.+++.++. ...+..||++||..+.+.
T Consensus 159 al~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~g~tvii~sH~~~~~~ 210 (233)
T PRK11629 159 ALVNNPRLVLADE-----------PTGNLDARNADSIFQLLGELN---RLQGTAFLVVTHDLQLAK 210 (233)
T ss_pred HHhcCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHHH
Confidence 3346799999999 677899999999999998762 223678999999887654
No 321
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.59 E-value=3.7e-07 Score=89.98 Aligned_cols=111 Identities=17% Similarity=0.304 Sum_probs=74.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh--------------------------------hhh
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------------------------------QKY 235 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~--------------------------------~~~ 235 (419)
+.+.++..+.|.||+|+|||||++.|++.. ...-+.+++.++. ...
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~ 102 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI 102 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 456778889999999999999999999753 2333333332110 000
Q ss_pred hc----------------------------hhHHH--HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 236 IG----------------------------EGSRM--VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 236 ~g----------------------------~~~~~--i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
.| ...+. .+-.+..|..+.|.++++|| |+++.|+..+..
T Consensus 103 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE-----------Pt~gLD~~~~~~ 171 (301)
T TIGR03522 103 YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE-----------PTTGLDPNQLVE 171 (301)
T ss_pred cCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CcccCCHHHHHH
Confidence 00 00000 12223334457899999999 778899999999
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
+.+++..+. . +..||++||..+.+..
T Consensus 172 l~~~l~~~~----~-~~tiii~sH~l~~~~~ 197 (301)
T TIGR03522 172 IRNVIKNIG----K-DKTIILSTHIMQEVEA 197 (301)
T ss_pred HHHHHHHhc----C-CCEEEEEcCCHHHHHH
Confidence 999998873 2 3779999999887654
No 322
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=3.5e-07 Score=88.98 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=41.6
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.+|++|| ++++.|+.....+.+++..+. ..+..||++||+.+.+..
T Consensus 152 aL~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 152 VLAMDPDVIVLDE-----------PMAYLDPRGQETLMEILDRLH----NQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HHHcCCCEEEEEC-----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 3446799999999 677899999999999998773 236789999999887654
No 323
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.59 E-value=4.3e-07 Score=98.79 Aligned_cols=119 Identities=26% Similarity=0.356 Sum_probs=82.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.++++..+.+.|++|||||||+|.+.+-. ..+-+.+|+-++-
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE 573 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC
Confidence 456778889999999999999999999854 4455666653320
Q ss_pred --------------------------hhhhch----hHHHHHHHHHHHH--hhCCceEEecccccccccccCCCCCCCCH
Q 014743 233 --------------------------QKYIGE----GSRMVRELFVMAR--EHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 233 --------------------------~~~~g~----~~~~i~~lf~~a~--~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
+..+|+ .+++.|+....|| -+.|.||++|| ++++.|+
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDE-----------aTSaLD~ 642 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDE-----------ATSALDP 642 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeC-----------cccccCH
Confidence 001222 2334455554444 57899999999 5667899
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcC
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~ 331 (419)
+..+.+.+-|.++. .+.++|+.|||+..+. +.|+++.+.
T Consensus 643 ~sE~~I~~~L~~~~-----~~~T~I~IaHRl~ti~-------~adrIiVl~ 681 (709)
T COG2274 643 ETEAIILQNLLQIL-----QGRTVIIIAHRLSTIR-------SADRIIVLD 681 (709)
T ss_pred hHHHHHHHHHHHHh-----cCCeEEEEEccchHhh-------hccEEEEcc
Confidence 99999988888773 3577889999987653 455555543
No 324
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=3.1e-07 Score=92.44 Aligned_cols=122 Identities=28% Similarity=0.355 Sum_probs=78.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~---------------------------------- 232 (419)
++.+.++..+.|.||+|||||||+++||+.. ...-+.+++.++.
T Consensus 26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~ 105 (351)
T PRK11432 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKM 105 (351)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhH
Confidence 3456778889999999999999999999853 2333444432210
Q ss_pred -------------------------hhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 233 -------------------------QKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 233 -------------------------~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
.+++...++.. |-.+..|....|.|+++|| |.++.|...+..
T Consensus 106 ~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDE-----------P~s~LD~~~r~~ 174 (351)
T PRK11432 106 LGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDE-----------PLSNLDANLRRS 174 (351)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC-----------CcccCCHHHHHH
Confidence 00111111111 2223334456799999999 677889998888
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhhH-----HhcCCCce
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILDQ-----ALLRPGRI 324 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~-----allr~gRf 324 (419)
+.+.|..+. ...++.+|++||+.+.+.. .+++.||+
T Consensus 175 l~~~l~~l~---~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 175 MREKIRELQ---QQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred HHHHHHHHH---HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 888887763 2336788999999876532 33455554
No 325
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.58 E-value=3.2e-07 Score=85.20 Aligned_cols=117 Identities=15% Similarity=0.279 Sum_probs=71.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh--------hh---------------chhHHHHH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK--------YI---------------GEGSRMVR 244 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~--------~~---------------g~~~~~i~ 244 (419)
|++.+.-++++||||||||+++..++... +...+.++..++... +. .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 77888889999999999999999988643 556777777542100 00 01112244
Q ss_pred HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 245 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 245 ~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
.+...+..+.|++|+||-+..+.....+. ......+.+.+++..+..+....++.+|+|....
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~----~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~ 150 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSD----DRISRNRELARQLTLLLSLARKKNLAVVITNQVY 150 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCC----ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccE
Confidence 45555666689999999999986432111 1112222343444434333456678888876543
No 326
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.58 E-value=4.5e-07 Score=81.69 Aligned_cols=114 Identities=26% Similarity=0.364 Sum_probs=76.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch-----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------------------- 231 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l----------------------------------- 231 (419)
++.++.+..+-+.||+|+|||||...||+.. ...-+.+++.+.
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 3456677889999999999999999999853 333444444221
Q ss_pred ------------------------hhhhhchhHHHHHHHHHHHH--hhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 232 ------------------------VQKYIGEGSRMVRELFVMAR--EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 232 ------------------------~~~~~g~~~~~i~~lf~~a~--~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
..+.+++..+.-|+-...|| -...-|+++|| +.+..++..+..
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE-----------PFsALdP~LR~e 167 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE-----------PFSALDPALRAE 167 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC-----------chhhcCHHHHHH
Confidence 11123333344444444443 23334999999 556688999999
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|+.++.++. ...+.++++.||.+++...
T Consensus 168 Ml~Lv~~l~---~E~~~TllmVTH~~~Da~~ 195 (231)
T COG3840 168 MLALVSQLC---DERKMTLLMVTHHPEDAAR 195 (231)
T ss_pred HHHHHHHHH---HhhCCEEEEEeCCHHHHHH
Confidence 999998874 3456778899999887643
No 327
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.58 E-value=6.5e-07 Score=82.57 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=44.3
Q ss_pred HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh-----HHhc
Q 014743 245 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD-----QALL 319 (419)
Q Consensus 245 ~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld-----~all 319 (419)
-.+++|....|.||++|| |++..||.....+-+++.++. .+..||..||...... -+|+
T Consensus 158 LcIARalAv~PeVlLmDE-----------PtSALDPIsT~kIEeLi~eLk-----~~yTIviVTHnmqQAaRvSD~taFf 221 (253)
T COG1117 158 LCIARALAVKPEVLLMDE-----------PTSALDPISTLKIEELITELK-----KKYTIVIVTHNMQQAARVSDYTAFF 221 (253)
T ss_pred HHHHHHHhcCCcEEEecC-----------cccccCchhHHHHHHHHHHHH-----hccEEEEEeCCHHHHHHHhHhhhhh
Confidence 334445557799999999 677788888888888988883 4566777777765332 2565
Q ss_pred CCCce
Q 014743 320 RPGRI 324 (419)
Q Consensus 320 r~gRf 324 (419)
-.|++
T Consensus 222 ~~G~L 226 (253)
T COG1117 222 YLGEL 226 (253)
T ss_pred cccEE
Confidence 55543
No 328
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.57 E-value=5.2e-07 Score=83.25 Aligned_cols=49 Identities=18% Similarity=0.038 Sum_probs=37.8
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
....|.+|++|| |+++.|......+.+++..+. ..+..||++||.+..+
T Consensus 142 l~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 142 WLSRAPLWILDE-----------PTTALDKAGVALLAGLLRAHL----ARGGIVLLTTHQDLGL 190 (198)
T ss_pred HhcCCCEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH----hCCCEEEEEEcccccc
Confidence 346799999999 677789888888999888762 2345788999987544
No 329
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.57 E-value=9.5e-07 Score=91.25 Aligned_cols=187 Identities=20% Similarity=0.260 Sum_probs=104.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhh-----chhHHHH----HHHHHHHHhhCCceEEec
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYI-----GEGSRMV----RELFVMAREHAPSIIFMD 261 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~-----g~~~~~i----~~lf~~a~~~~psVl~iD 261 (419)
....++++|.+||||+++++++.... +.+|+.++|..+..... |...+.. .............+||||
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 45679999999999999999997654 57899999987643322 2111000 000000112246789999
Q ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHHHccccc------cCCCeEEEEEeCCcchhhHHhcCCCce---------eE
Q 014743 262 EIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE------ASNKIKVLMATNRIDILDQALLRPGRI---------DR 326 (419)
Q Consensus 262 EiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~------~~~~v~VI~tTn~~~~ld~allr~gRf---------d~ 326 (419)
||+.+ +...+..+..++....... ...++.+|+||+..- .....+|+| ..
T Consensus 241 ei~~l------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~ 305 (441)
T PRK10365 241 EIGDI------------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVV 305 (441)
T ss_pred ccccC------------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccc
Confidence 99995 4566777777776532110 112567888887632 122234444 23
Q ss_pred EEEcCCCCH--HHHHHHHHHHHhhccc-----CCCCC---HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 014743 327 KIEFPNPNE--ESRLDILKIHSRRMNL-----MRGID---LKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDF 396 (419)
Q Consensus 327 ~I~~~~P~~--~~r~~Il~~~~~~~~~-----~~~~d---l~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~ 396 (419)
.|.+|+... ++...++..++..... ...+. +..|......-+.++|++++++|...+ ....++.+|+
T Consensus 306 ~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l 382 (441)
T PRK10365 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL---TGEYISEREL 382 (441)
T ss_pred eecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhC
Confidence 455555432 2444455555554321 01123 333444332335688888888876643 3334555555
Q ss_pred HH
Q 014743 397 EM 398 (419)
Q Consensus 397 ~~ 398 (419)
..
T Consensus 383 ~~ 384 (441)
T PRK10365 383 PL 384 (441)
T ss_pred ch
Confidence 43
No 330
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.57 E-value=4.8e-07 Score=85.60 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=40.0
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.|+++|| |+++.|+.....+.++|.++. ...+..||++||+++.+.
T Consensus 129 l~~~p~lllLDE-----------Pt~gLD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~ 179 (230)
T TIGR01184 129 LSIRPKVLLLDE-----------PFGALDALTRGNLQEELMQIW---EEHRVTVLMVTHDVDEAL 179 (230)
T ss_pred HHcCCCEEEEcC-----------CCcCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 346799999999 777899999999999887762 223577999999887653
No 331
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.57 E-value=4.7e-07 Score=87.32 Aligned_cols=113 Identities=23% Similarity=0.252 Sum_probs=72.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcc----------------hhh-----h------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSE----------------LVQ-----K------------ 234 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~----------------l~~-----~------------ 234 (419)
+.+.++..+.|.||+|+|||||++.|++... ..-+.+++.. ++. .
T Consensus 33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 112 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRD 112 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHH
Confidence 4567788899999999999999999998541 1222222211 000 0
Q ss_pred -----------------hhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc
Q 014743 235 -----------------YIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG 295 (419)
Q Consensus 235 -----------------~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~ 295 (419)
.++..++.. +-.+..|....|.++++|| |+++.|......+.++|.++.
T Consensus 113 ~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~L~~~~- 180 (257)
T PRK11247 113 AALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE-----------PLGALDALTRIEMQDLIESLW- 180 (257)
T ss_pred HHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH-
Confidence 000001111 1222334446799999999 777899999999988887762
Q ss_pred cccCCCeEEEEEeCCcchhhH
Q 014743 296 FEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 296 ~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...+..||++||+.+.+..
T Consensus 181 --~~~~~tviivsHd~~~~~~ 199 (257)
T PRK11247 181 --QQHGFTVLLVTHDVSEAVA 199 (257)
T ss_pred --HHcCCEEEEEeCCHHHHHH
Confidence 2235678999999876543
No 332
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.57 E-value=5.5e-07 Score=83.97 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=39.8
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.|+++|| |+++.|+.....+.+++.++. . .+..||++||+.+.+.
T Consensus 147 l~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~-~~~tvi~~sH~~~~~~ 196 (213)
T cd03235 147 LVQDPDLLLLDE-----------PFAGVDPKTQEDIYELLRELR---R-EGMTILVVTHDLGLVL 196 (213)
T ss_pred HHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHHHH
Confidence 346799999999 777899999999999988763 2 3567999999877654
No 333
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.56 E-value=4.4e-07 Score=87.14 Aligned_cols=114 Identities=27% Similarity=0.345 Sum_probs=72.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeC---------c-chh-------hh---------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSG---------S-ELV-------QK--------------- 234 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~---------s-~l~-------~~--------------- 234 (419)
++.+.++..+.|.||+|+|||||++.|++.. ...-+.+++ . .+. ..
T Consensus 24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILP 103 (251)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHH
Confidence 3456788899999999999999999999753 111111111 0 000 00
Q ss_pred -------------hhchhHHH--HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC
Q 014743 235 -------------YIGEGSRM--VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 299 (419)
Q Consensus 235 -------------~~g~~~~~--i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~ 299 (419)
++....+. .+-.+..|....|.++++|| |+++.|......+.++|.++. ..
T Consensus 104 ~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~L~~~~---~~ 169 (251)
T PRK09544 104 ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE-----------PTQGVDVNGQVALYDLIDQLR---RE 169 (251)
T ss_pred HHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH---Hh
Confidence 00011111 12233334457899999999 677889999999999887762 22
Q ss_pred CCeEEEEEeCCcchhhH
Q 014743 300 NKIKVLMATNRIDILDQ 316 (419)
Q Consensus 300 ~~v~VI~tTn~~~~ld~ 316 (419)
.+..||++||+.+.+..
T Consensus 170 ~g~tiiivsH~~~~i~~ 186 (251)
T PRK09544 170 LDCAVLMVSHDLHLVMA 186 (251)
T ss_pred cCCEEEEEecCHHHHHH
Confidence 25678999999876644
No 334
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=4.7e-07 Score=85.76 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=40.1
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.||++|| |+++.|+.....+.++|.++. ...+..||++||+++.+.
T Consensus 151 l~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 151 LALDPELLLYDE-----------PTAGLDPIASGVIDDLIRSLK---KELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HhcCCCEEEecC-----------CcccCCHHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHHH
Confidence 346799999999 777899999999999988763 223567899999887654
No 335
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.56 E-value=3.7e-07 Score=92.59 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=41.0
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| |.++.|......+.++|.++. ...+..+|++||+.+.+..
T Consensus 147 aL~~~P~lLLLDE-----------Pts~LD~~~~~~l~~~L~~l~---~~~g~tvI~vTHd~~~~~~ 199 (369)
T PRK11000 147 TLVAEPSVFLLDE-----------PLSNLDAALRVQMRIEISRLH---KRLGRTMIYVTHDQVEAMT 199 (369)
T ss_pred HHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HHhCCEEEEEeCCHHHHHH
Confidence 4446799999999 777899999888888887763 2336789999999876543
No 336
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=4.6e-07 Score=91.01 Aligned_cols=53 Identities=23% Similarity=0.504 Sum_probs=42.2
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| |+++.|+.....+.++|.++. ...+..||++||+.+.+..
T Consensus 154 aL~~~p~iLlLDE-----------Pts~LD~~~~~~l~~~L~~l~---~~~g~tiilvtH~~~~i~~ 206 (343)
T PRK11153 154 ALASNPKVLLCDE-----------ATSALDPATTRSILELLKDIN---RELGLTIVLITHEMDVVKR 206 (343)
T ss_pred HHHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 4446799999999 777899999999999998773 2336789999999886644
No 337
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.56 E-value=5.9e-07 Score=83.07 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=39.8
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.++++|| |+++.|......+.++|.++. ..+..||++||++..++
T Consensus 141 al~~~p~~lilDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 141 LWMSKAKLWLLDE-----------PLVALDELSLLTIITKIQEHR----AKGGAVLLTSHQDLPLN 191 (200)
T ss_pred HHhcCCCEEEEeC-----------CCcccCHHHHHHHHHHHHHHH----HcCCEEEEEeCCchhcc
Confidence 3346799999999 677889999999999998762 23567899999877654
No 338
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.56 E-value=4.4e-07 Score=87.42 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=38.9
Q ss_pred CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 254 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 254 ~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
.|.||++|| |+++.|......+.+++.++. ...+..||++||.++.+..
T Consensus 158 ~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~~ 206 (258)
T PRK13548 158 PPRWLLLDE-----------PTSALDLAHQHHVLRLARQLA---HERGLAVIVVLHDLNLAAR 206 (258)
T ss_pred CCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEECCHHHHHH
Confidence 689999999 777889999888998888762 1235679999998876643
No 339
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.56 E-value=4.7e-07 Score=92.62 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=43.2
Q ss_pred HHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 248 VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 248 ~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
..|..+.|.||++|| |+++.|...+..+.++|.++. ..+..||++||.++.+..
T Consensus 151 ArAL~~~P~iLLLDE-----------PtsgLD~~~~~~l~~lL~~l~----~~g~TIIivsHdl~~~~~ 204 (402)
T PRK09536 151 ARALAQATPVLLLDE-----------PTASLDINHQVRTLELVRRLV----DDGKTAVAAIHDLDLAAR 204 (402)
T ss_pred HHHHHcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH----hcCCEEEEEECCHHHHHH
Confidence 334457899999999 778899998999999998873 235789999999887754
No 340
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=5.5e-07 Score=83.53 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=72.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC-----CceEEEeCcchh--------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSELV-------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~-----~~~i~v~~s~l~-------------------------------- 232 (419)
+.+.++..+.|.||+|+|||||++.|++... ..-+.+++.++.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 107 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFA 107 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhh
Confidence 4467788899999999999999999998643 333444332210
Q ss_pred -----hhhhchhHHH--HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEE
Q 014743 233 -----QKYIGEGSRM--VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVL 305 (419)
Q Consensus 233 -----~~~~g~~~~~--i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI 305 (419)
..++....+. .+-.+..|....|.++++|| |+++.|......+.+++.++.. ..+..+||
T Consensus 108 ~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDE-----------Pt~~LD~~~~~~~~~~l~~~~~--~~~~t~ii 174 (202)
T cd03233 108 LRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDN-----------STRGLDSSTALEILKCIRTMAD--VLKTTTFV 174 (202)
T ss_pred hhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHHH--hCCCEEEE
Confidence 0011111111 12234455567899999999 6778999999999999887731 11334566
Q ss_pred EEeCCcchhh
Q 014743 306 MATNRIDILD 315 (419)
Q Consensus 306 ~tTn~~~~ld 315 (419)
.+++..+.+.
T Consensus 175 ~~~h~~~~~~ 184 (202)
T cd03233 175 SLYQASDEIY 184 (202)
T ss_pred EEcCCHHHHH
Confidence 6666655443
No 341
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.55 E-value=4.7e-07 Score=91.23 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=41.5
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.+|++|| |.++.|...+..+.++|.++. ...+..+|++||+.+.+..
T Consensus 150 AL~~~P~llLLDE-----------P~s~LD~~~r~~l~~~L~~l~---~~~g~tii~vTHd~~ea~~ 202 (353)
T PRK10851 150 ALAVEPQILLLDE-----------PFGALDAQVRKELRRWLRQLH---EELKFTSVFVTHDQEEAME 202 (353)
T ss_pred HHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 3446799999999 777899999988888888763 3346789999999876544
No 342
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=6.8e-07 Score=83.21 Aligned_cols=50 Identities=26% Similarity=0.370 Sum_probs=40.0
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.++++|| |+++.|......+.+++..+. . +..||++||+++.+.
T Consensus 144 al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tii~vsH~~~~~~ 193 (211)
T cd03264 144 ALVGDPSILIVDE-----------PTAGLDPEERIRFRNLLSELG----E-DRIVILSTHIVEDVE 193 (211)
T ss_pred HHhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHh----C-CCEEEEEcCCHHHHH
Confidence 3346799999999 777899999999999998873 2 267899999887654
No 343
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.55 E-value=7.2e-07 Score=85.46 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=71.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCc------------------chhhh-----------------
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGS------------------ELVQK----------------- 234 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s------------------~l~~~----------------- 234 (419)
+.++..+.|.||+|+|||||+++|++.. ...-+.+++. +.+..
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 4567789999999999999999999853 1122222210 00000
Q ss_pred ----------hhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCe
Q 014743 235 ----------YIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 302 (419)
Q Consensus 235 ----------~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 302 (419)
.++...+.. +-.+..|....|.|+++|| |+++.|......+.+++.++. ...+.
T Consensus 102 ~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~ 167 (246)
T cd03237 102 PLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDE-----------PSAYLDVEQRLMASKVIRRFA---ENNEK 167 (246)
T ss_pred HcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCC
Confidence 001111111 2223334456799999999 677889988888888888763 23357
Q ss_pred EEEEEeCCcchhhH
Q 014743 303 KVLMATNRIDILDQ 316 (419)
Q Consensus 303 ~VI~tTn~~~~ld~ 316 (419)
.||++||+.+.+..
T Consensus 168 tiiivsHd~~~~~~ 181 (246)
T cd03237 168 TAFVVEHDIIMIDY 181 (246)
T ss_pred EEEEEeCCHHHHHH
Confidence 79999999876643
No 344
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=6.8e-07 Score=85.02 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=40.2
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.++++|| |+++.|......+.+++..+. ..+..||++||+++.+..
T Consensus 151 al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~g~tiii~sH~~~~~~~ 202 (241)
T PRK10895 151 ALAANPKFILLDE-----------PFAGVDPISVIDIKRIIEHLR----DSGLGVLITDHNVRETLA 202 (241)
T ss_pred HHhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH----hcCCEEEEEEcCHHHHHH
Confidence 3346799999999 677889988888888888763 235678999998876644
No 345
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.54 E-value=7.3e-07 Score=84.75 Aligned_cols=50 Identities=18% Similarity=0.455 Sum_probs=39.5
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| |+++.|......+.+++..+. ..+..||++||+.+.+..
T Consensus 152 ~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~~ 201 (240)
T PRK09493 152 AVKPKLMLFDE-----------PTSALDPELRHEVLKVMQDLA----EEGMTMVIVTHEIGFAEK 201 (240)
T ss_pred hcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHH
Confidence 35799999999 667789988888999988762 235678999999887643
No 346
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=7.8e-07 Score=84.65 Aligned_cols=50 Identities=16% Similarity=0.432 Sum_probs=39.7
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.++++|| ++++.|......+.+++..+. ..+..||++||+++.+..
T Consensus 157 ~~~p~llilDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~~~~ 206 (242)
T PRK11124 157 MMEPQVLLFDE-----------PTAALDPEITAQIVSIIRELA----ETGITQVIVTHEVEVARK 206 (242)
T ss_pred hcCCCEEEEcC-----------CCCcCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHH
Confidence 35799999999 667789999999999998773 235678999999887643
No 347
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=6.7e-07 Score=84.86 Aligned_cols=50 Identities=12% Similarity=0.262 Sum_probs=39.3
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| |+++.|......+.+++.++. ..+..||++||.++.+..
T Consensus 153 ~~~p~illlDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~~ 202 (237)
T PRK11614 153 MSQPRLLLLDE-----------PSLGLAPIIIQQIFDTIEQLR----EQGMTIFLVEQNANQALK 202 (237)
T ss_pred HhCCCEEEEcC-----------ccccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCcHHHHHh
Confidence 35799999999 777899999999999988763 235678889998776543
No 348
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=6.7e-07 Score=84.60 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=40.5
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.++++|| |+++.|......+.++|.++. ...+..||++||.++.+..
T Consensus 144 l~~~p~lllLDE-----------P~~gLD~~~~~~~~~~l~~~~---~~~~~tiii~sH~~~~~~~ 195 (232)
T PRK10771 144 LVREQPILLLDE-----------PFSALDPALRQEMLTLVSQVC---QERQLTLLMVSHSLEDAAR 195 (232)
T ss_pred HhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEECCHHHHHH
Confidence 346799999999 677889999988999888762 2235678999999887653
No 349
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=6.8e-07 Score=86.66 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=40.5
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.||++|| |+++.|......+.+++.++. ...+..||++||+.+.+.
T Consensus 174 al~~~p~illLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 174 ALAVDPDILLMDE-----------AFSALDPLIRREMQDELLRLQ---AELQKTIVFITHDLDEAL 225 (269)
T ss_pred HHhcCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 3346799999999 777899999999999988763 223567899999887653
No 350
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.53 E-value=2.4e-07 Score=79.05 Aligned_cols=73 Identities=21% Similarity=0.326 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc--------CCceEEEeCcchhh------h--------hhc--hhHHHHHHHHHH
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSELVQ------K--------YIG--EGSRMVRELFVM 249 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~--------~~~~i~v~~s~l~~------~--------~~g--~~~~~i~~lf~~ 249 (419)
..+.++++||||+|||++++.++... ..+++.++++...+ . ..+ ......+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35678999999999999999999876 56777877754321 0 011 123333444455
Q ss_pred HHhhCCceEEecccccc
Q 014743 250 AREHAPSIIFMDEIDSI 266 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l 266 (419)
...+...+|+|||+|.+
T Consensus 83 l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHCTEEEEEEETTHHH
T ss_pred HHhcCCeEEEEeChHhc
Confidence 55555569999999996
No 351
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.53 E-value=8.2e-07 Score=84.87 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=39.5
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.||++|| |+++.|......+.++|.++. ..+..||++||+.+.+..
T Consensus 160 ~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tvi~~tH~~~~~~~ 209 (250)
T PRK11264 160 AMRPEVILFDE-----------PTSALDPELVGEVLNTIRQLA----QEKRTMVIVTHEMSFARD 209 (250)
T ss_pred hcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHH
Confidence 35799999999 677889998999999888763 235678899999876643
No 352
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=6.3e-07 Score=85.37 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=40.3
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.++++|| |+++.|......+.++|.++. ...+..||++||+++.+..
T Consensus 150 l~~~p~llllDE-----------Pt~~LD~~~~~~l~~~L~~~~---~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 150 LAADPPLLLMDE-----------PFGALDPITRDQLQEEFKRLQ---QELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred HhcCCCEEEecC-----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHHHHH
Confidence 346799999999 677889988888999888763 2235779999999876543
No 353
>PF05729 NACHT: NACHT domain
Probab=98.52 E-value=2.2e-06 Score=75.61 Aligned_cols=139 Identities=17% Similarity=0.239 Sum_probs=77.8
Q ss_pred eEEEEcCCCChHHHHHHHHHhcc------C---CceEEEeCcchhhh------------hhchhHHHHHH-HHHHHHhhC
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHT------D---CTFIRVSGSELVQK------------YIGEGSRMVRE-LFVMAREHA 254 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~------~---~~~i~v~~s~l~~~------------~~g~~~~~i~~-lf~~a~~~~ 254 (419)
-++++|+||+|||++++.++..+ . ...+.+.+.++... ........+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 47899999999999999999754 1 11233333322111 11111122222 223344556
Q ss_pred CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch--hhHHhcCCCceeEEEEcCC
Q 014743 255 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI--LDQALLRPGRIDRKIEFPN 332 (419)
Q Consensus 255 psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~--ld~allr~gRfd~~I~~~~ 332 (419)
+.+|+||.+|.+...... .........+.+++.. ....++.+|.|+..... +...+.. ...+.+++
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~ 149 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEP 149 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECC
Confidence 678999999998543210 0111233344455543 12345666666654332 2233322 25788999
Q ss_pred CCHHHHHHHHHHHHh
Q 014743 333 PNEESRLDILKIHSR 347 (419)
Q Consensus 333 P~~~~r~~Il~~~~~ 347 (419)
.+.+++.++++.+++
T Consensus 150 ~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 150 FSEEDIKQYLRKYFS 164 (166)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999988765
No 354
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.52 E-value=9.6e-07 Score=80.41 Aligned_cols=110 Identities=33% Similarity=0.405 Sum_probs=72.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcc------------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE------------------------------------ 230 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~------------------------------------ 230 (419)
++++.++..+.+.||+|||||||...+|... ...-+.+++..
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi 104 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGI 104 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCC
Confidence 4567788889999999999999999999854 22233333211
Q ss_pred --------------------hhhhhhchhHHHHHHHHHHHH--hhCCceEEecccccccccccCCCCCCCCHHHHHHHHH
Q 014743 231 --------------------LVQKYIGEGSRMVRELFVMAR--EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 288 (419)
Q Consensus 231 --------------------l~~~~~g~~~~~i~~lf~~a~--~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~ 288 (419)
+-.+|+-+.++..++-.-.|| ...|..+|+|| |.+..|.-.++.|.+
T Consensus 105 ~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE-----------PfgAlDa~tRe~mQe 173 (259)
T COG4525 105 EKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE-----------PFGALDALTREQMQE 173 (259)
T ss_pred CHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecC-----------chhhHHHHHHHHHHH
Confidence 012233344455555554444 56799999999 555566667777877
Q ss_pred HHHHccccccCCCeEEEEEeCCcc
Q 014743 289 LLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 289 lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
+|-++- ...+.-+++.||..+
T Consensus 174 lLldlw---~~tgk~~lliTH~ie 194 (259)
T COG4525 174 LLLDLW---QETGKQVLLITHDIE 194 (259)
T ss_pred HHHHHH---HHhCCeEEEEeccHH
Confidence 776552 344556788888765
No 355
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.52 E-value=8.4e-07 Score=84.29 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=40.9
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.|+++|| |+++.|......+.++|.++. ...+..||++||.++.+.
T Consensus 167 al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~~ 218 (236)
T cd03267 167 ALLHEPEILFLDE-----------PTIGLDVVAQENIRNFLKEYN---RERGTTVLLTSHYMKDIE 218 (236)
T ss_pred HHhcCCCEEEEcC-----------CCCCCCHHHHHHHHHHHHHHH---hcCCCEEEEEecCHHHHH
Confidence 3446799999999 777899999999999998763 233567999999987654
No 356
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=7.9e-07 Score=86.23 Aligned_cols=51 Identities=14% Similarity=0.308 Sum_probs=40.5
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.||++|| |+++.|......+.++|.++. ..+..||++||+.+.+..
T Consensus 151 L~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~g~tii~vtH~~~~~~~ 201 (271)
T PRK13638 151 LVLQARYLLLDE-----------PTAGLDPAGRTQMIAIIRRIV----AQGNHVIISSHDIDLIYE 201 (271)
T ss_pred HHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 346799999999 677899999999999998873 235678999999887643
No 357
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=6.9e-07 Score=87.16 Aligned_cols=52 Identities=31% Similarity=0.394 Sum_probs=41.4
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.||++|| |+++.|+.....+.++|.++. ...+..||++||.++.+.
T Consensus 154 al~~~p~lllLDE-----------Pt~gLD~~~~~~l~~~l~~l~---~~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 154 VLALQPDIIILDE-----------ATSMLDPRGRREVLETVRQLK---EQKGITVLSITHDLDEAA 205 (279)
T ss_pred HHHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HcCCCEEEEEecCHHHHH
Confidence 3346799999999 677899999999999998773 234688999999987663
No 358
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=6.4e-07 Score=87.35 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=40.7
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
|....|.||++|| ++++.|......+.+++.++. ...+..||++||+.+.+
T Consensus 154 al~~~p~lLlLDE-----------Pt~~LD~~~~~~l~~~l~~l~---~~~g~tilivtH~~~~~ 204 (279)
T PRK13650 154 AVAMRPKIIILDE-----------ATSMLDPEGRLELIKTIKGIR---DDYQMTVISITHDLDEV 204 (279)
T ss_pred HHHcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 3446799999999 677889998998999888773 22367899999998776
No 359
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.51 E-value=8.6e-07 Score=83.55 Aligned_cols=49 Identities=22% Similarity=0.471 Sum_probs=38.8
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
...|.++++|| |+++.|......+.+++.++. ...+..||++||+.+.+
T Consensus 162 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 210 (228)
T PRK10584 162 NGRPDVLFADE-----------PTGNLDRQTGDKIADLLFSLN---REHGTTLILVTHDLQLA 210 (228)
T ss_pred hcCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 46799999999 777899999999999988762 22356789999987654
No 360
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.51 E-value=3.9e-07 Score=87.09 Aligned_cols=112 Identities=25% Similarity=0.328 Sum_probs=80.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcc-------------------------hhhhhhchhHH
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE-------------------------LVQKYIGEGSR 241 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~-------------------------l~~~~~g~~~~ 241 (419)
+|.+..+..+.|.|.+||||||++|.+.+-. ..+-+.+++.+ +..+|+.+.++
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 4556788999999999999999999999844 33445554432 23456666666
Q ss_pred HHHHHHHHH--HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 242 MVRELFVMA--REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 242 ~i~~lf~~a--~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
+.++-+..| ....|.+|+.||. .+..|..++..++.+|..++ ...++..++.||+....
T Consensus 113 GQrQRi~IARALal~P~liV~DEp-----------vSaLDvSiqaqIlnLL~dlq---~~~~lt~lFIsHDL~vv 173 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEP-----------VSALDVSVQAQILNLLKDLQ---EELGLTYLFISHDLSVV 173 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCc-----------hhhcchhHHHHHHHHHHHHH---HHhCCeEEEEEEEHHhh
Confidence 665555554 4567999999994 44567777887888887774 44578889999987644
No 361
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.51 E-value=9e-07 Score=82.63 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=39.2
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
...|.|+++|| |+++.|......+.+++.++. ...+..||++||+.+.+.
T Consensus 144 ~~~p~llllDE-----------Pt~~LD~~~~~~~~~~l~~~~---~~~~~tii~vsh~~~~~~ 193 (213)
T TIGR01277 144 VRPNPILLLDE-----------PFSALDPLLREEMLALVKQLC---SERQRTLLMVTHHLSDAR 193 (213)
T ss_pred hcCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 35799999999 667789999999999888762 233678899999887653
No 362
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.50 E-value=3e-06 Score=87.47 Aligned_cols=214 Identities=18% Similarity=0.243 Sum_probs=113.3
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeC
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~ 228 (419)
..|++++.+.+.+++.=...-+.++..++... ..+. .--..+-+||+||+||||||.++.|+.+++..++.-.-
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~----~~~~--~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~N 143 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQV----AEFT--PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSN 143 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHH----HHhc--cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecC
Confidence 35778888888899988888888888887610 0000 00123457789999999999999999999877766441
Q ss_pred c-------c------hhh-hhhchhHHHHHHHHHHHH------------hhCCceEEecccccccccccCCCCCCCCHHH
Q 014743 229 S-------E------LVQ-KYIGEGSRMVRELFVMAR------------EHAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 229 s-------~------l~~-~~~g~~~~~i~~lf~~a~------------~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
. . +.. .|..... ........+. ...+.+||+||+-..+.. .+.+.
T Consensus 144 pi~~~~~~~~h~~t~~~~~~~~s~L~-~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~--------d~~~~ 214 (634)
T KOG1970|consen 144 PINLKEPENLHNETSFLMFPYQSQLA-VFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR--------DDSET 214 (634)
T ss_pred CccccccccccccchhcccchhhHHH-HHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh--------hhHHH
Confidence 1 1 111 1111111 1112222231 234679999998665432 12333
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCc-chhhH------HhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-C-
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRI-DILDQ------ALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-R- 353 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~-~~ld~------allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~- 353 (419)
++.+++++... ..-.+++|+|-... +..++ .+.-..|++ .|.|.+=...-..+.|....+..... .
T Consensus 215 f~evL~~y~s~----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~ 289 (634)
T KOG1970|consen 215 FREVLRLYVSI----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSG 289 (634)
T ss_pred HHHHHHHHHhc----CCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccC
Confidence 33333333332 12245444443222 22222 222222565 57888777766666665544432211 1
Q ss_pred -CC-CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 014743 354 -GI-DLKKIAEKMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 354 -~~-dl~~la~~t~G~sgadi~~l~~~A~~~a 383 (419)
.+ +...+-..+.| ++.||+..+..--+.+
T Consensus 290 ~k~~~~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 290 IKVPDTAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred CcCchhHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 11 12233333333 3449988776655554
No 363
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=7.6e-07 Score=86.61 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=40.6
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
|....|.||++|| ++++.|+..+..+.+++.++. ..+..||++||+.+.+
T Consensus 150 al~~~p~lllLDE-----------Pt~gLD~~~~~~l~~~l~~l~----~~g~til~~tH~~~~~ 199 (274)
T PRK13644 150 ILTMEPECLIFDE-----------VTSMLDPDSGIAVLERIKKLH----EKGKTIVYITHNLEEL 199 (274)
T ss_pred HHHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----hCCCEEEEEecCHHHH
Confidence 3346799999999 677889999999999998773 2467899999998876
No 364
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=1e-06 Score=82.01 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=40.5
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.++++|| |+++.|......+.+++.++. ...+..||++||.++.+..
T Consensus 143 l~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 143 LVRDKPVLLLDE-----------PFAALDPALRAEMLDLVLDLH---AETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred HhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHHh
Confidence 346799999999 677889999999999888762 2336778999998876643
No 365
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1e-06 Score=83.92 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=40.3
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.++++|| ++++.|......+.++|..+. ...+..||++||+.+.+..
T Consensus 145 al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~g~tii~~sH~~~~~~~ 197 (241)
T PRK14250 145 TLANNPEVLLLDE-----------PTSALDPTSTEIIEELIVKLK---NKMNLTVIWITHNMEQAKR 197 (241)
T ss_pred HHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhCCCEEEEEeccHHHHHH
Confidence 3346799999999 667788888888888888763 2235678999999887653
No 366
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=1.1e-06 Score=86.24 Aligned_cols=51 Identities=18% Similarity=0.367 Sum_probs=41.0
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.||++|| ++++.|+.....+.++|..+. ..+..||++||+.+.+..
T Consensus 159 L~~~p~illLDE-----------Pt~gLD~~~~~~l~~~l~~l~----~~g~til~vtHd~~~~~~ 209 (288)
T PRK13643 159 LAMEPEVLVLDE-----------PTAGLDPKARIEMMQLFESIH----QSGQTVVLVTHLMDDVAD 209 (288)
T ss_pred HHhCCCEEEEEC-----------CccCCCHHHHHHHHHHHHHHH----HCCCEEEEEecCHHHHHH
Confidence 346799999999 677899999999999998773 236789999999876654
No 367
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=9.8e-07 Score=85.51 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=39.7
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.++++|| ++++.|......+.+++.++. ...+..||++||+++.+.
T Consensus 157 l~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~L~~~~---~~~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 157 LALNPSVIILDE-----------ATSMLDPDARQNLLDLVRKVK---SEHNITIISITHDLSEAM 207 (269)
T ss_pred HHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCchHHh
Confidence 346799999999 667789999999999888762 223567889999887653
No 368
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=9.2e-07 Score=84.06 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=39.5
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
...|.||++|| |+++.|+.....+.+++.++. ...+..||++||+++.+.
T Consensus 152 ~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tvii~sH~~~~~~ 201 (239)
T cd03296 152 AVEPKVLLLDE-----------PFGALDAKVRKELRRWLRRLH---DELHVTTVFVTHDQEEAL 201 (239)
T ss_pred hcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHH
Confidence 35799999999 677899999999999998763 223567999999887653
No 369
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.49 E-value=9.6e-07 Score=83.92 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=39.9
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
..|.++++|| ++++.|....+.+.+++.++. ...+..||++|++++.+..
T Consensus 147 ~~p~llllDE-----------P~~~LD~~~~~~~~~~l~~~~---~~~~~tvli~sH~~~~~~~ 196 (237)
T TIGR00968 147 VEPQVLLLDE-----------PFGALDAKVRKELRSWLRKLH---DEVHVTTVFVTHDQEEAME 196 (237)
T ss_pred cCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHh
Confidence 5699999999 667889999999999998762 2235788999999886644
No 370
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.49 E-value=1.2e-06 Score=84.05 Aligned_cols=51 Identities=18% Similarity=0.419 Sum_probs=39.9
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.+|++|| |+++.|......+.++|.++. ...+..||++||+++.+..
T Consensus 162 ~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~~~ 212 (252)
T TIGR03005 162 AMRPKVMLFDE-----------VTSALDPELVGEVLNVIRRLA---SEHDLTMLLVTHEMGFARE 212 (252)
T ss_pred HcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHHHH
Confidence 35799999999 667789888888988888763 2236789999999876643
No 371
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.49 E-value=1.2e-06 Score=84.36 Aligned_cols=51 Identities=18% Similarity=0.360 Sum_probs=41.0
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.|+++|| |+++.|......+.++|.++. ..+..||++||+++.+..
T Consensus 167 l~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~l~----~~g~tiiivsH~~~~~~~ 217 (257)
T PRK10619 167 LAMEPEVLLFDE-----------PTSALDPELVGEVLRIMQQLA----EEGKTMVVVTHEMGFARH 217 (257)
T ss_pred HhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHH
Confidence 346799999999 777899999999999998873 236788999999887654
No 372
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=1e-06 Score=82.24 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=40.1
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.++++|| |+++.|......+.+++.++. ...+..||++||..+.+.
T Consensus 146 l~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 196 (214)
T cd03297 146 LAAQPELLLLDE-----------PFSALDRALRLQLLPELKQIK---KNLNIPVIFVTHDLSEAE 196 (214)
T ss_pred HhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HHcCcEEEEEecCHHHHH
Confidence 346799999999 777899999999999888762 223567899999987764
No 373
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.48 E-value=1e-06 Score=85.83 Aligned_cols=53 Identities=19% Similarity=0.463 Sum_probs=42.0
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| ++++.|......+.+++.++. ...+..||++||.++.+..
T Consensus 151 aL~~~p~llilDE-----------Pt~gLD~~~~~~l~~~l~~l~---~~~g~tvli~tH~~~~~~~ 203 (277)
T PRK13652 151 VIAMEPQVLVLDE-----------PTAGLDPQGVKELIDFLNDLP---ETYGMTVIFSTHQLDLVPE 203 (277)
T ss_pred HHHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHHH
Confidence 4446799999999 777899999999999998763 2236789999999887654
No 374
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.48 E-value=9.2e-07 Score=89.17 Aligned_cols=114 Identities=26% Similarity=0.326 Sum_probs=73.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~---------------------------------- 232 (419)
++.+.++..+.|.||+|||||||+++|++.. ...-+.+++..+.
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 97 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNL 97 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHH
Confidence 3456778889999999999999999999853 2222333221110
Q ss_pred -------------------------hhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 233 -------------------------QKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 233 -------------------------~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
.++++...+.. +-.+..|....|.+|++|| |.++.|......
T Consensus 98 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDE-----------Pts~LD~~~~~~ 166 (352)
T PRK11144 98 RYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDE-----------PLASLDLPRKRE 166 (352)
T ss_pred HhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC-----------CcccCCHHHHHH
Confidence 00000111111 2223334456799999999 777899999988
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
+.++|..+. ...+..||++||+.+.+..
T Consensus 167 l~~~L~~l~---~~~g~tii~vTHd~~~~~~ 194 (352)
T PRK11144 167 LLPYLERLA---REINIPILYVSHSLDEILR 194 (352)
T ss_pred HHHHHHHHH---HhcCCeEEEEecCHHHHHH
Confidence 988888763 2335779999999876543
No 375
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.48 E-value=1.4e-06 Score=81.97 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=40.2
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.++++|| |+++.|......+.+++.++. ..+..||++||+.+.+..
T Consensus 128 l~~~p~llilDE-----------P~~~LD~~~~~~l~~~l~~~~----~~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 128 LATRPSVLLLDE-----------PFTGLDMPTQELLTELFIELA----GAGTAILMTTHDLAQAMA 178 (223)
T ss_pred HhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHH
Confidence 346799999999 677889999999999998763 236788999998876543
No 376
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.48 E-value=1.3e-06 Score=83.06 Aligned_cols=50 Identities=18% Similarity=0.477 Sum_probs=39.5
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
...|.||++|| |+++.|+.....+.++|.++. ...+..||++||+.+.+.
T Consensus 161 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tiii~tH~~~~~~ 210 (243)
T TIGR02315 161 AQQPDLILADE-----------PIASLDPKTSKQVMDYLKRIN---KEDGITVIINLHQVDLAK 210 (243)
T ss_pred hcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHH
Confidence 36799999999 677889999999999988762 223567899999887654
No 377
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.48 E-value=1.7e-06 Score=99.92 Aligned_cols=178 Identities=20% Similarity=0.343 Sum_probs=101.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCce---EEEeCc--
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF---IRVSGS-- 229 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~---i~v~~s-- 229 (419)
.|...+++++|.+..++++...+.. +...++.+.++||+|+||||||+++++.+...| +.++..
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v 246 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFI 246 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccc
Confidence 3455668899999999999987743 234567789999999999999999987653221 122110
Q ss_pred ----chhhh-----h---hchhHHHHHH-------------HHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHH
Q 014743 230 ----ELVQK-----Y---IGEGSRMVRE-------------LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 284 (419)
Q Consensus 230 ----~l~~~-----~---~g~~~~~i~~-------------lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~ 284 (419)
..... + .......+.+ .........+.+|+||+++. ...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~--------------~~~-- 310 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD--------------QDV-- 310 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC--------------HHH--
Confidence 00000 0 0000000111 11111234567899999765 111
Q ss_pred HHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCH----HHH
Q 014743 285 TMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDL----KKI 360 (419)
Q Consensus 285 ~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl----~~l 360 (419)
++.+...... ...+..||+||++...+. ...+++.+.++.|+.++..++|..+.-.-... ..++ ..+
T Consensus 311 --l~~L~~~~~~-~~~GsrIIiTTrd~~vl~-----~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~i 381 (1153)
T PLN03210 311 --LDALAGQTQW-FGSGSRIIVITKDKHFLR-----AHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEV 381 (1153)
T ss_pred --HHHHHhhCcc-CCCCcEEEEEeCcHHHHH-----hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHH
Confidence 2222221111 123566888998755442 22467889999999999999988765332211 1122 235
Q ss_pred HHHcCCCC
Q 014743 361 AEKMNGAS 368 (419)
Q Consensus 361 a~~t~G~s 368 (419)
+..+.|.-
T Consensus 382 v~~c~GLP 389 (1153)
T PLN03210 382 ALRAGNLP 389 (1153)
T ss_pred HHHhCCCc
Confidence 56666644
No 378
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.48 E-value=1.1e-06 Score=84.25 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=38.4
Q ss_pred CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 254 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 254 ~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
.|.+|++|| |+++.|......+.++|..+. ..+..||++||..+.+..
T Consensus 151 ~p~llllDE-----------Pt~~LD~~~~~~l~~~L~~~~----~~~~tvi~~sH~~~~~~~ 198 (248)
T PRK03695 151 AGQLLLLDE-----------PMNSLDVAQQAALDRLLSELC----QQGIAVVMSSHDLNHTLR 198 (248)
T ss_pred CCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH----hCCCEEEEEecCHHHHHH
Confidence 469999999 677889999999999998773 235779999999876543
No 379
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=1.6e-06 Score=84.49 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCc----------------eEEEeCcchhhhhhchhHHHHHHHHHHHHh----
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCT----------------FIRVSGSELVQKYIGEGSRMVRELFVMARE---- 252 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~----------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~---- 252 (419)
.-+..+||+||+|+||+++|.++|..+-|. +..+.... .+..+ .-..+|++.+.+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccC
Confidence 457789999999999999999999865331 11121100 00001 12234555544433
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCC
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 332 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~ 332 (419)
....|++||++|++ ..+.++.|+.+|.+ +..++++|+.|+.++.+.|.+++ |+- .+.|++
T Consensus 94 ~~~kv~ii~~ad~m------------t~~AaNaLLK~LEE-----Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~ 153 (290)
T PRK05917 94 SPYKIYIIHEADRM------------TLDAISAFLKVLED-----PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPM 153 (290)
T ss_pred CCceEEEEechhhc------------CHHHHHHHHHHhhc-----CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccc
Confidence 33569999999994 45677778777765 46789999999999999999988 664 566775
Q ss_pred CC
Q 014743 333 PN 334 (419)
Q Consensus 333 P~ 334 (419)
+.
T Consensus 154 ~~ 155 (290)
T PRK05917 154 EE 155 (290)
T ss_pred hh
Confidence 53
No 380
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.2e-06 Score=85.10 Aligned_cols=52 Identities=23% Similarity=0.420 Sum_probs=41.1
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.++++|| ++++.|...+..+.+++.++. ..+..||++||+.+.+..
T Consensus 151 al~~~p~llllDE-----------Pt~gLD~~~~~~l~~~l~~l~----~~~~til~vtH~~~~~~~ 202 (275)
T PRK13639 151 ILAMKPEIIVLDE-----------PTSGLDPMGASQIMKLLYDLN----KEGITIIISTHDVDLVPV 202 (275)
T ss_pred HHhcCCCEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEecCHHHHHH
Confidence 3346799999999 667889999999999998773 236779999999886653
No 381
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.47 E-value=1.2e-06 Score=84.92 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=41.4
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| |+++.|......+.+++.++. ...+..||++||+.+.+..
T Consensus 157 al~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~g~tiiivsH~~~~~~~ 209 (269)
T PRK11831 157 AIALEPDLIMFDE-----------PFVGQDPITMGVLVKLISELN---SALGVTCVVVSHDVPEVLS 209 (269)
T ss_pred HHhcCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHHHH
Confidence 3346799999999 777899999999999998763 2335789999999876654
No 382
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.47 E-value=1.1e-06 Score=81.53 Aligned_cols=112 Identities=18% Similarity=0.284 Sum_probs=64.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhc-----cCC--------------ceEEEeCcchhhhhhchhHHHHHHHHHHH
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDC--------------TFIRVSGSELVQKYIGEGSRMVRELFVMA 250 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~-----~~~--------------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a 250 (419)
+.+.++..++|+||+|+||||+.++++.- .+. -+..+...+-.....+.....++++-..+
T Consensus 24 ~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~ 103 (202)
T cd03243 24 INLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEIL 103 (202)
T ss_pred EEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHH
Confidence 33455678999999999999999999931 111 12222222222222233233333332222
Q ss_pred -HhhCCceEEecccccccccccCCCCCCCCHHHHHHH-HHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 -REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 -~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l-~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.++++||. ..+.++.....+ ..++..+. ..+..+|++||..+.+..
T Consensus 104 ~~~~~~~llllDEp-----------~~gld~~~~~~l~~~ll~~l~----~~~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 104 SLATPRSLVLIDEL-----------GRGTSTAEGLAIAYAVLEHLL----EKGCRTLFATHFHELADL 156 (202)
T ss_pred HhccCCeEEEEecC-----------CCCCCHHHHHHHHHHHHHHHH----hcCCeEEEECChHHHHHH
Confidence 2357999999994 334555444333 44555542 235678899998765543
No 383
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1e-06 Score=87.83 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=41.6
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.||++|| ++++.|...+..++++|..+. ...+..+|++||+.+.+..
T Consensus 168 L~~~P~llilDE-----------Pts~LD~~~~~~il~lL~~l~---~~~g~til~iTHdl~~~~~ 219 (326)
T PRK11022 168 IACRPKLLIADE-----------PTTALDVTIQAQIIELLLELQ---QKENMALVLITHDLALVAE 219 (326)
T ss_pred HHhCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 346799999999 777899999999999998873 2346789999999886643
No 384
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.1e-06 Score=85.26 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=39.7
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.|+++|| ++++.|......+.++|.++. ..++..||++||+++.+.
T Consensus 157 l~~~p~lllLDE-----------P~~gLD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 207 (271)
T PRK13632 157 LALNPEIIIFDE-----------STSMLDPKGKREIKKIMVDLR---KTRKKTLISITHDMDEAI 207 (271)
T ss_pred HHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCcEEEEEEechhHHh
Confidence 346799999999 677889998999999998763 223477899999887663
No 385
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.5e-06 Score=81.85 Aligned_cols=49 Identities=24% Similarity=0.425 Sum_probs=38.7
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
|....|.++++|| |+++.|......+.+++..+. . +..||++||.++.+
T Consensus 153 al~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 201 (229)
T cd03254 153 AMLRDPKILILDE-----------ATSNIDTETEKLIQEALEKLM----K-GRTSIIIAHRLSTI 201 (229)
T ss_pred HHhcCCCEEEEeC-----------ccccCCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHH
Confidence 3346799999999 677889998888999888762 2 46788899987765
No 386
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.5e-06 Score=82.58 Aligned_cols=51 Identities=22% Similarity=0.481 Sum_probs=40.1
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| |+++.|+.....+.++|.++. ...+..||++||+++.+..
T Consensus 160 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tii~~tH~~~~~~~ 210 (241)
T cd03256 160 MQQPKLILADE-----------PVASLDPASSRQVMDLLKRIN---REEGITVIVSLHQVDLARE 210 (241)
T ss_pred hcCCCEEEEeC-----------ccccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 35799999999 677889999999999888762 2235679999999887653
No 387
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.4e-06 Score=85.35 Aligned_cols=51 Identities=20% Similarity=0.457 Sum_probs=41.2
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.||++|| ++++.|+.....+.+++.++. ...+..||++||+.+.+..
T Consensus 161 ~~~p~illlDE-----------Pt~~LD~~~~~~l~~~l~~l~---~~~g~tvl~vtH~~~~~~~ 211 (286)
T PRK13646 161 AMNPDIIVLDE-----------PTAGLDPQSKRQVMRLLKSLQ---TDENKTIILVSHDMNEVAR 211 (286)
T ss_pred HhCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH---HhCCCEEEEEecCHHHHHH
Confidence 36799999999 677899999999999998873 2346889999999887654
No 388
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.46 E-value=1.1e-06 Score=81.39 Aligned_cols=108 Identities=14% Similarity=0.298 Sum_probs=63.4
Q ss_pred cCCCCC-CeEEEEcCCCChHHHHHHHHHh-----ccCCc---------------eEEEeCcchhhhhhchhHHHHHHHHH
Q 014743 190 LGIAQP-KGVLLYGPPGTGKTLLARAVAH-----HTDCT---------------FIRVSGSELVQKYIGEGSRMVRELFV 248 (419)
Q Consensus 190 ~gi~~p-~~iLL~GPpGtGKT~LakalA~-----~~~~~---------------~i~v~~s~l~~~~~g~~~~~i~~lf~ 248 (419)
+.+.++ +.++|.||+|+||||+.|.++. +.++. +..+...+......+.....++++..
T Consensus 22 ~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~ 101 (200)
T cd03280 22 IQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIAR 101 (200)
T ss_pred EEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHH
Confidence 345555 4699999999999999999982 11111 01111122222233333334444444
Q ss_pred HHH-hhCCceEEecccccccccccCCCCCCCCHHHHHHHH-HHHHHccccccCCCeEEEEEeCCcc
Q 014743 249 MAR-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 249 ~a~-~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~-~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
.+. ...|+++++||. ..+.++.....+. .++..+. ..+..+|++||..+
T Consensus 102 i~~~~~~p~llllDEp-----------~~glD~~~~~~i~~~~l~~l~----~~~~~vi~~tH~~~ 152 (200)
T cd03280 102 ILQHADPDSLVLLDEL-----------GSGTDPVEGAALAIAILEELL----ERGALVIATTHYGE 152 (200)
T ss_pred HHHhCCCCcEEEEcCC-----------CCCCCHHHHHHHHHHHHHHHH----hcCCEEEEECCHHH
Confidence 433 357899999994 4456766655553 5666652 23567889999743
No 389
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.46 E-value=1.2e-06 Score=88.28 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=41.4
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.+|++|| |+++.|......+.++|.++. ...+..||++||+++.+..
T Consensus 145 aL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~L~~l~---~~~g~tiiivtH~~~~~~~ 197 (354)
T TIGR02142 145 ALLSSPRLLLMDE-----------PLAALDDPRKYEILPYLERLH---AEFGIPILYVSHSLQEVLR 197 (354)
T ss_pred HHHcCCCEEEEcC-----------CCcCCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHHH
Confidence 3346799999999 777899999999999988763 2235779999999886643
No 390
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.46 E-value=1.6e-06 Score=82.12 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=40.6
Q ss_pred HHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 249 MAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 249 ~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.|....|.++++|| |+++.|......+.++|..+. . +..||++||.++.+.
T Consensus 151 ral~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sH~~~~~~ 201 (237)
T cd03252 151 RALIHNPRILIFDE-----------ATSALDYESEHAIMRNMHDIC----A-GRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHhhCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHhc----C-CCEEEEEeCCHHHHH
Confidence 34456799999999 677889999999999998762 2 467999999988763
No 391
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.46 E-value=1.7e-06 Score=80.12 Aligned_cols=111 Identities=22% Similarity=0.232 Sum_probs=69.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeC-------c-chh---------------h-----------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSG-------S-ELV---------------Q----------- 233 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~-------s-~l~---------------~----------- 233 (419)
+.++++..+.+.||+|+|||||++.+++.. ...-+.+++ . .++ .
T Consensus 26 ~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~ 105 (204)
T cd03250 26 LEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACA 105 (204)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcC
Confidence 456788899999999999999999999853 122222211 0 000 0
Q ss_pred --hhh---------------chhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHH-HHHHc
Q 014743 234 --KYI---------------GEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE-LLNQL 293 (419)
Q Consensus 234 --~~~---------------g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~-lL~~l 293 (419)
.++ ....... +-.+..|....|.++++|| +.++.|......+.+ ++...
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDE-----------P~~~LD~~~~~~l~~~ll~~~ 174 (204)
T cd03250 106 LEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD-----------PLSAVDAHVGRHIFENCILGL 174 (204)
T ss_pred cHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC-----------ccccCCHHHHHHHHHHHHHHh
Confidence 000 0111111 2223344456799999999 666788887777776 55544
Q ss_pred cccccCCCeEEEEEeCCcchhh
Q 014743 294 DGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 294 ~~~~~~~~v~VI~tTn~~~~ld 315 (419)
. ..+..||++||+++.+.
T Consensus 175 ~----~~~~tvi~~sh~~~~~~ 192 (204)
T cd03250 175 L----LNNKTRILVTHQLQLLP 192 (204)
T ss_pred c----cCCCEEEEEeCCHHHHh
Confidence 2 23678999999877664
No 392
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.46 E-value=8.1e-07 Score=92.67 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=83.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcc-------------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE------------------------------------- 230 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~------------------------------------- 230 (419)
|.+.++..+-|.|++||||||++|+|++-. ....+.+++.+
T Consensus 312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ 391 (539)
T COG1123 312 FDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILA 391 (539)
T ss_pred eEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHH
Confidence 456778889999999999999999999743 23333333321
Q ss_pred ------------------------------hhhhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCC
Q 014743 231 ------------------------------LVQKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 278 (419)
Q Consensus 231 ------------------------------l~~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~ 278 (419)
+..+|+++..++. |-.+..|....|.+|++|| +.+..
T Consensus 392 epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DE-----------p~SaL 460 (539)
T COG1123 392 EPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDE-----------PVSAL 460 (539)
T ss_pred hHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecC-----------Ccccc
Confidence 1223444433333 3344455567899999999 56678
Q ss_pred CHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH-----HhcCCCce
Q 014743 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ-----ALLRPGRI 324 (419)
Q Consensus 279 ~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~-----allr~gRf 324 (419)
|..++..+..+|..+. ..-++..++.||+.+.+.. +++..||+
T Consensus 461 Dvsvqa~VlnLl~~lq---~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 461 DVSVQAQVLNLLKDLQ---EELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred CHHHHHHHHHHHHHHH---HHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 9999988888887774 4457889999999876643 34555554
No 393
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.2e-06 Score=84.81 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=40.9
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.|+++|| |+++.|......+.++|.++. ...+..||++||..+.+..
T Consensus 161 al~~~p~lllLDE-----------Pt~~LD~~~~~~~~~~l~~l~---~~~~~tiii~sH~~~~i~~ 213 (265)
T PRK10575 161 LVAQDSRCLLLDE-----------PTSALDIAHQVDVLALVHRLS---QERGLTVIAVLHDINMAAR 213 (265)
T ss_pred HHhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 3446799999999 677889999999999998763 2235678999999876643
No 394
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.46 E-value=1e-06 Score=85.59 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=38.8
Q ss_pred CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 254 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 254 ~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.|.++++|| |+++.|......+.+++.++. ...+..||++||+++.+.
T Consensus 172 ~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tviiisH~~~~~~ 219 (272)
T PRK13547 172 PPRYLLLDE-----------PTAALDLAHQHRLLDTVRRLA---RDWNLGVLAIVHDPNLAA 219 (272)
T ss_pred CCCEEEEcC-----------ccccCCHHHHHHHHHHHHHHH---HhcCCEEEEEECCHHHHH
Confidence 799999999 677889999999999988763 223577899999987664
No 395
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.46 E-value=1.8e-06 Score=81.46 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=43.7
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEE
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIE 329 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~ 329 (419)
|....|.|+++|| |+.+.|+.....+.+++.++. ...+..||++|+..+.+. ..|+++.
T Consensus 151 al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tvii~sh~~~~~~-------~~d~i~~ 209 (225)
T PRK10247 151 NLQFMPKVLLLDE-----------ITSALDESNKHNVNEIIHRYV---REQNIAVLWVTHDKDEIN-------HADKVIT 209 (225)
T ss_pred HHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEECChHHHH-------hCCEEEE
Confidence 3446799999999 667789988888998888762 223567888999877652 2355666
Q ss_pred c
Q 014743 330 F 330 (419)
Q Consensus 330 ~ 330 (419)
+
T Consensus 210 l 210 (225)
T PRK10247 210 L 210 (225)
T ss_pred E
Confidence 6
No 396
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.45 E-value=4.1e-06 Score=79.44 Aligned_cols=126 Identities=18% Similarity=0.239 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 274 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~ 274 (419)
..+-.++||+|||||+++|.+|..++.+++.++|++-++- ..+.++|.-+... .+.+.|||++.|
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl-------- 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRL-------- 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCS--------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhh--------
Confidence 4566889999999999999999999999999999985443 3466777655443 469999999984
Q ss_pred CCCCCHHHHHHHHHHHHHcccc---------------ccCCCeEEEEEeCCc----chhhHHhcCCCceeEEEEcCCCCH
Q 014743 275 SGNGDSEVQRTMLELLNQLDGF---------------EASNKIKVLMATNRI----DILDQALLRPGRIDRKIEFPNPNE 335 (419)
Q Consensus 275 ~~~~~~~~~~~l~~lL~~l~~~---------------~~~~~v~VI~tTn~~----~~ld~allr~gRfd~~I~~~~P~~ 335 (419)
+.++...+.+.+..+... .-+.++-+++|.|.. ..+|+.++. -| +-+.+..||.
T Consensus 97 ----~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~ 169 (231)
T PF12774_consen 97 ----SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDL 169 (231)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--H
T ss_pred ----hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCH
Confidence 455665555555443210 111245567777733 478888865 34 6788999998
Q ss_pred HHHHHHH
Q 014743 336 ESRLDIL 342 (419)
Q Consensus 336 ~~r~~Il 342 (419)
....+++
T Consensus 170 ~~I~ei~ 176 (231)
T PF12774_consen 170 SLIAEIL 176 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766664
No 397
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.45 E-value=1.3e-06 Score=83.33 Aligned_cols=113 Identities=23% Similarity=0.337 Sum_probs=78.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhhh--------------h-----------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQK--------------Y----------------- 235 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~~--------------~----------------- 235 (419)
++.++++..++|.||+|.||||+.|.|.+.+ ....++|++-+-..+ +
T Consensus 44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~ 123 (325)
T COG4586 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLK 123 (325)
T ss_pred eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHH
Confidence 4567788889999999999999999999854 556777766432110 0
Q ss_pred ----hc----------------------------hhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHH
Q 014743 236 ----IG----------------------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 236 ----~g----------------------------~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
++ ......+.=+.++.-|+|.|+|+|| ++-+.|-..+
T Consensus 124 ~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE-----------pTvgLDV~aq 192 (325)
T COG4586 124 LIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDE-----------PTVGLDVNAQ 192 (325)
T ss_pred HHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecC-----------CccCcchhHH
Confidence 00 0011122333345568999999999 5666777778
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
..+.+++.+.. ...+..|+.|||..+.+-
T Consensus 193 ~~ir~Flke~n---~~~~aTVllTTH~~~di~ 221 (325)
T COG4586 193 ANIREFLKEYN---EERQATVLLTTHIFDDIA 221 (325)
T ss_pred HHHHHHHHHHH---HhhCceEEEEecchhhHH
Confidence 78888888764 456788999999988664
No 398
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=1.2e-06 Score=89.64 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=40.2
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.||++|| |.++.|+.....+.++|..+. ...+..||++||+.+.+.
T Consensus 179 L~~~P~iLLLDE-----------Pts~LD~~~r~~l~~~L~~l~---~~~g~TIIivTHd~~~~~ 229 (400)
T PRK10070 179 LAINPDILLMDE-----------AFSALDPLIRTEMQDELVKLQ---AKHQRTIVFISHDLDEAM 229 (400)
T ss_pred HhcCCCEEEEEC-----------CCccCCHHHHHHHHHHHHHHH---HHCCCeEEEEECCHHHHH
Confidence 346799999999 777899999999999888763 223567899999987654
No 399
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.45 E-value=1.6e-06 Score=82.04 Aligned_cols=50 Identities=22% Similarity=0.453 Sum_probs=40.1
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.+|++|| |+++.|......+.+++.++. . .+..||++||+++.+..
T Consensus 159 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~-~~~tii~vsH~~~~~~~ 208 (236)
T cd03219 159 ATDPKLLLLDE-----------PAAGLNPEETEELAELIRELR---E-RGITVLLVEHDMDVVMS 208 (236)
T ss_pred hcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---H-CCCEEEEEecCHHHHHH
Confidence 35799999999 777899999999999998773 2 35678999999876644
No 400
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=1.2e-06 Score=87.44 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=41.8
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| ++++.|...+..++++|.++. ...+..||++||+.+.+..
T Consensus 168 AL~~~P~lLilDE-----------Pts~LD~~~~~~i~~lL~~l~---~~~g~til~iTHdl~~~~~ 220 (327)
T PRK11308 168 ALMLDPDVVVADE-----------PVSALDVSVQAQVLNLMMDLQ---QELGLSYVFISHDLSVVEH 220 (327)
T ss_pred HHHcCCCEEEEEC-----------CCccCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 3446799999999 677899999999999888773 2346789999999876643
No 401
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.4e-06 Score=85.32 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=40.4
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.||++|| |+++.|+.....+.+++.++. ...+..||++||+++.+..
T Consensus 166 ~~~p~lLlLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tiiiisH~~~~~~~ 216 (289)
T PRK13645 166 AMDGNTLVLDE-----------PTGGLDPKGEEDFINLFERLN---KEYKKRIIMVTHNMDQVLR 216 (289)
T ss_pred HhCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHHH
Confidence 36799999999 677899999999999888763 2236789999999886643
No 402
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=1.6e-06 Score=82.05 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=40.9
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.++++|| |+.+.|......+.+++.++. ...+..||++||+.+.+..
T Consensus 144 al~~~p~llllDE-----------P~~gLD~~~~~~l~~~l~~~~---~~~~~tiii~sh~~~~~~~ 196 (232)
T cd03300 144 ALVNEPKVLLLDE-----------PLGALDLKLRKDMQLELKRLQ---KELGITFVFVTHDQEEALT 196 (232)
T ss_pred HHhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 3346799999999 667789999999999988763 2236788999999887644
No 403
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.5e-06 Score=84.67 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=40.4
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.+|++|| |+++.|+.....+.++|.++. ..+..||++||+++.+..
T Consensus 160 l~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiiivsH~~~~~~~ 210 (280)
T PRK13649 160 LAMEPKILVLDE-----------PTAGLDPKGRKELMTLFKKLH----QSGMTIVLVTHLMDDVAN 210 (280)
T ss_pred HHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeccHHHHHH
Confidence 346799999999 677899999999999988763 236789999999876543
No 404
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.44 E-value=2.1e-06 Score=81.39 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=40.2
Q ss_pred HHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 249 MAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 249 ~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.|....|.++++|| |+++.|+.....+.++|.++. .+..||++||.++.+.
T Consensus 152 ~al~~~p~llllDE-----------P~~gLD~~~~~~l~~~l~~~~-----~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 152 RALLRNPKILLLDE-----------ATSALDAESEKLVQEALDRAM-----KGRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHhcCCCEEEEeC-----------ccccCCHHHHHHHHHHHHHhc-----CCCEEEEEeCCHHHHh
Confidence 34456799999999 677899999999999998762 3567899999887763
No 405
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.44 E-value=6.4e-06 Score=79.93 Aligned_cols=173 Identities=26% Similarity=0.307 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhc--cCCc---eEEEeCcc------hhhh-
Q 014743 167 DQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCT---FIRVSGSE------LVQK- 234 (419)
Q Consensus 167 ~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~--~~~~---~i~v~~s~------l~~~- 234 (419)
+..+++|.+.+... . ...+.+.++|++|+|||+||+.+++. .... .+.++.+. +...
T Consensus 2 e~~~~~l~~~L~~~----------~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN----------S-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT----------T-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC----------C-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 55677777777552 1 45667889999999999999999976 3222 23333321 1111
Q ss_pred --hhc----------hhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCe
Q 014743 235 --YIG----------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 302 (419)
Q Consensus 235 --~~g----------~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 302 (419)
..+ ........+.+ .....+++|+||+++.. . .+.++...+.. ...+.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~-~L~~~~~LlVlDdv~~~--------------~---~~~~l~~~~~~--~~~~~ 130 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRE-LLKDKRCLLVLDDVWDE--------------E---DLEELREPLPS--FSSGS 130 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHH-HHCCTSEEEEEEEE-SH--------------H---HH-------HC--HHSS-
T ss_pred cccccccccccccccccccccccchh-hhccccceeeeeeeccc--------------c---ccccccccccc--ccccc
Confidence 111 12223333333 33445899999997662 1 12122221111 22356
Q ss_pred EEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc---cCC-CCCHHHHHHHcCCCCHHHHHHH
Q 014743 303 KVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN---LMR-GIDLKKIAEKMNGASGAELKAV 375 (419)
Q Consensus 303 ~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~---~~~-~~dl~~la~~t~G~sgadi~~l 375 (419)
.||+||....... .+- .-+..+.++..+.++-.++|........ ... .-....|+..+.| .|--|..+
T Consensus 131 kilvTTR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 131 KILVTTRDRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp EEEEEESCGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 7888888754322 121 1167899999999999999988764433 111 1124678888877 55455444
No 406
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.44 E-value=1.7e-06 Score=82.30 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=39.9
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.++++|| |+++.|......+.++|.++. ..+..||++||+++.+..
T Consensus 160 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 160 LLEPKLAILDE-----------IDSGLDIDALKIVAEGINRLR----EPDRSFLIITHYQRLLNY 209 (243)
T ss_pred hcCCCEEEecC-----------CcccCCHHHHHHHHHHHHHHH----HCCcEEEEEEecHHHHHh
Confidence 35689999999 777899999999999998773 235678999998876643
No 407
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=1.1e-06 Score=85.15 Aligned_cols=141 Identities=23% Similarity=0.395 Sum_probs=93.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHh--ccCCceEEEeCcch-----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSEL----------------------------------- 231 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~--~~~~~~i~v~~s~l----------------------------------- 231 (419)
++.++.+.-+-+.|.+|.|||||+|.+-. .....-+.+++.++
T Consensus 26 sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA 105 (339)
T COG1135 26 SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA 105 (339)
T ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhh
Confidence 34567778899999999999999999964 23334444444221
Q ss_pred -----------------------------hhhhhchhHHHHHHHH--HHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 232 -----------------------------VQKYIGEGSRMVRELF--VMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 232 -----------------------------~~~~~g~~~~~i~~lf--~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
...|+.+.++..++.. .+|..+.|.||+.|| .++..||
T Consensus 106 ~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DE-----------aTSALDP 174 (339)
T COG1135 106 FPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDE-----------ATSALDP 174 (339)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecC-----------ccccCCh
Confidence 1124444444444443 445567899999999 4567899
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH-----HhcCCCceeEEE----EcCCCCHHHHHHHHH
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ-----ALLRPGRIDRKI----EFPNPNEESRLDILK 343 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~-----allr~gRfd~~I----~~~~P~~~~r~~Il~ 343 (419)
+....++++|..+. ..-+++|++.||..+.+.. +++..||+-+.= .|-.|-.+--++++.
T Consensus 175 ~TT~sIL~LL~~In---~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~ 243 (339)
T COG1135 175 ETTQSILELLKDIN---RELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIG 243 (339)
T ss_pred HHHHHHHHHHHHHH---HHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHHHHHH
Confidence 99999999998884 5568999999999886643 556667653321 244554444444443
No 408
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=2.2e-06 Score=81.16 Aligned_cols=52 Identities=17% Similarity=0.328 Sum_probs=40.8
Q ss_pred HHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 248 VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 248 ~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
..|....|.+|++|| |.++.|......+.++|..+. . +..||++||..+.+.
T Consensus 149 a~aL~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sh~~~~~~ 200 (236)
T cd03253 149 ARAILKNPPILLLDE-----------ATSALDTHTEREIQAALRDVS----K-GRTTIVIAHRLSTIV 200 (236)
T ss_pred HHHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHhc----C-CCEEEEEcCCHHHHH
Confidence 334456799999999 677889988888999888763 3 567899999887763
No 409
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.43 E-value=1.2e-06 Score=89.61 Aligned_cols=110 Identities=26% Similarity=0.375 Sum_probs=75.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-------hhhhc------------------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV-------QKYIG------------------------ 237 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~-------~~~~g------------------------ 237 (419)
.+.++.++-+.||+|+|||||+|.|..-. ...-+++|+.++. .+++|
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~ 437 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEA 437 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccC
Confidence 35667789999999999999999998753 4456777776542 12222
Q ss_pred ------------------------------hh----HHHHHHHHHHHH--hhCCceEEecccccccccccCCCCCCCCHH
Q 014743 238 ------------------------------EG----SRMVRELFVMAR--EHAPSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 238 ------------------------------~~----~~~i~~lf~~a~--~~~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
+. .+..|+-...|| -..|.+|++|| |.++.|.+
T Consensus 438 d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDE-----------PNsNLD~~ 506 (580)
T COG4618 438 DPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE-----------PNSNLDSE 506 (580)
T ss_pred CHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecC-----------CCCCcchh
Confidence 11 122233333333 36799999999 55667777
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
-...+..-+..+ +..+.++|..||+|+.+.
T Consensus 507 GE~AL~~Ai~~~----k~rG~~vvviaHRPs~L~ 536 (580)
T COG4618 507 GEAALAAAILAA----KARGGTVVVIAHRPSALA 536 (580)
T ss_pred HHHHHHHHHHHH----HHcCCEEEEEecCHHHHh
Confidence 777787777766 356788999999987653
No 410
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.43 E-value=2.3e-06 Score=80.23 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=39.7
Q ss_pred HHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 249 MAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 249 ~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.|....|.++++|| |+.+.|+.....+.++|.++. . +..||++|++++.+.
T Consensus 152 ral~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~ 202 (221)
T cd03244 152 RALLRKSKILVLDE-----------ATASVDPETDALIQKTIREAF----K-DCTVLTIAHRLDTII 202 (221)
T ss_pred HHHhcCCCEEEEeC-----------ccccCCHHHHHHHHHHHHHhc----C-CCEEEEEeCCHHHHh
Confidence 34456799999999 667789999999999998762 2 367889999877664
No 411
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.43 E-value=2.4e-06 Score=80.99 Aligned_cols=110 Identities=19% Similarity=0.303 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh----hh----------h---------------hc-
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV----QK----------Y---------------IG- 237 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~----~~----------~---------------~g- 237 (419)
|++++..++++||||||||+++..++... +...++++..+-. .. + .+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 56778889999999999999975554422 4455555543211 00 0 00
Q ss_pred -hhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 238 -EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 238 -~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
.....+..+...+....|.++++||+-.+... ..++...+.+.+++..+. ..+.++++|++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~-------~~d~~~~~~l~~~l~~l~----~~g~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN-------DASEVAVNDLMAFFKRIS----SLNKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC-------CcchHHHHHHHHHHHHHH----hCCCEEEEEeccc
Confidence 01233445555555667999999998875421 123444456667776652 2244667776644
No 412
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=2e-06 Score=82.57 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=41.2
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.++++|| |+++.|......+.++|.++. ..+..||++||+++.+..
T Consensus 152 al~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~l~----~~~~tiii~tH~~~~~~~ 203 (255)
T PRK11231 152 VLAQDTPVVLLDE-----------PTTYLDINHQVELMRLMRELN----TQGKTVVTVLHDLNQASR 203 (255)
T ss_pred HHhcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEECCHHHHHH
Confidence 3346799999999 777899999999999998763 235779999999887654
No 413
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.6e-06 Score=84.68 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=41.5
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| ++++.|+.....+.+++.++. ...+..||++||+.+.+..
T Consensus 155 aL~~~p~lLilDE-----------Pt~gLD~~~~~~l~~~l~~l~---~~~g~tillvsH~~~~~~~ 207 (283)
T PRK13636 155 VLVMEPKVLVLDE-----------PTAGLDPMGVSEIMKLLVEMQ---KELGLTIIIATHDIDIVPL 207 (283)
T ss_pred HHHcCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH---HhCCCEEEEEecCHHHHHH
Confidence 3346799999999 677899999999999888763 2336789999999887654
No 414
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.43 E-value=1.8e-06 Score=81.16 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=39.0
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
..|.||++|| |+++.|......+.+++.++. ...+..||++||+++.+.
T Consensus 162 ~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~ 210 (228)
T cd03257 162 LNPKLLIADE-----------PTSALDVSVQAQILDLLKKLQ---EELGLTLLFITHDLGVVA 210 (228)
T ss_pred cCCCEEEecC-----------CCCCCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHH
Confidence 5689999999 677889999999999998773 222568999999887654
No 415
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.43 E-value=2.2e-06 Score=80.74 Aligned_cols=47 Identities=17% Similarity=0.373 Sum_probs=38.4
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
..|.++++|| |+++.|......+.++|.++. .. ..||++||+++.+.
T Consensus 158 ~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~-~tii~~sH~~~~~~ 204 (227)
T cd03260 158 NEPEVLLLDE-----------PTSALDPISTAKIEELIAELK----KE-YTIVIVTHNMQQAA 204 (227)
T ss_pred cCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHh----hC-cEEEEEeccHHHHH
Confidence 5689999999 677899999999999998873 23 67899999987654
No 416
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.42 E-value=2.2e-06 Score=80.25 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=39.3
Q ss_pred HHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 249 MAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 249 ~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
.|....|.++++|| |+++.|......+.++|.++. .. ..||++||..+.+
T Consensus 153 ~al~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~-~tii~~sH~~~~~ 202 (220)
T cd03245 153 RALLNDPPILLLDE-----------PTSAMDMNSEERLKERLRQLL----GD-KTLIIITHRPSLL 202 (220)
T ss_pred HHHhcCCCEEEEeC-----------ccccCCHHHHHHHHHHHHHhc----CC-CEEEEEeCCHHHH
Confidence 34446799999999 677899999999999998763 23 6789999987743
No 417
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.7e-06 Score=84.68 Aligned_cols=53 Identities=13% Similarity=0.356 Sum_probs=41.8
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| |+++.|+..+..+.+++.++. ...+..||++||+.+.+..
T Consensus 158 aL~~~P~llllDE-----------Pt~gLD~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~~~~ 210 (287)
T PRK13637 158 VVAMEPKILILDE-----------PTAGLDPKGRDEILNKIKELH---KEYNMTIILVSHSMEDVAK 210 (287)
T ss_pred HHHcCCCEEEEEC-----------CccCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 3346799999999 777899999999999998773 2346789999999876543
No 418
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.42 E-value=1.9e-06 Score=81.38 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=40.0
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| |+++.|......+.+++.++. ...+..||++||+++.+..
T Consensus 141 ~~~p~vllLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~~ 191 (230)
T TIGR02770 141 LLEPPFLIADE-----------PTTDLDVVNQARVLKLLRELR---QLFGTGILLITHDLGVVAR 191 (230)
T ss_pred hcCCCEEEEcC-----------CccccCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 35799999999 677789988888999888762 2236789999999886643
No 419
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.42 E-value=1.8e-06 Score=82.97 Aligned_cols=50 Identities=20% Similarity=0.407 Sum_probs=39.8
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.++++|| |+++.|......+.++|.++. ..+..||++||+++.+..
T Consensus 153 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~~ 202 (256)
T TIGR03873 153 AQEPKLLLLDE-----------PTNHLDVRAQLETLALVRELA----ATGVTVVAALHDLNLAAS 202 (256)
T ss_pred hcCCCEEEEcC-----------ccccCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHH
Confidence 35799999999 667789988888999998773 235679999999887644
No 420
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.6e-06 Score=84.55 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=40.5
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
...|.++++|| |+++.|...+..+.+++.++. ...+..||++||+++.+.
T Consensus 160 ~~~p~llllDE-----------Pt~gLD~~~~~~l~~~l~~l~---~~~g~tillvtH~~~~~~ 209 (280)
T PRK13633 160 AMRPECIIFDE-----------PTAMLDPSGRREVVNTIKELN---KKYGITIILITHYMEEAV 209 (280)
T ss_pred HcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecChHHHh
Confidence 36799999999 777899999999999998773 224678999999988764
No 421
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.9e-06 Score=85.15 Aligned_cols=52 Identities=17% Similarity=0.365 Sum_probs=41.3
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| ++++.|+.....+.+++.++. ..+..||++||+.+.+..
T Consensus 179 aL~~~P~lLlLDE-----------Pt~~LD~~~~~~l~~~l~~l~----~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 179 ILAMEPDFLVFDE-----------PTAGLDPQGVKEILEIFDNLN----KQGKTIILVTHDLDNVLE 230 (305)
T ss_pred HHHhCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH----HCCCEEEEEeeCHHHHHH
Confidence 3346799999999 677889999999999998873 236779999999876654
No 422
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.42 E-value=2.1e-06 Score=92.26 Aligned_cols=120 Identities=22% Similarity=0.301 Sum_probs=79.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-CCceEEEeCcchh-----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-~~~~i~v~~s~l~----------------------------------- 232 (419)
++.++++..+.+.||+|+|||||++.|++.. ..+-+.+++.++.
T Consensus 370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~ 449 (588)
T PRK11174 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPD 449 (588)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCC
Confidence 3456888999999999999999999999865 2234555542210
Q ss_pred --------------------------hhhhch----hHHHHHHHH--HHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 233 --------------------------QKYIGE----GSRMVRELF--VMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 233 --------------------------~~~~g~----~~~~i~~lf--~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
+..+|+ ..++-++-+ .+|.-..|.|+++|| ++++.|.
T Consensus 450 ~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE-----------~TSaLD~ 518 (588)
T PRK11174 450 ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE-----------PTASLDA 518 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCH
Confidence 001222 122223333 344457899999999 5667888
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcC
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~ 331 (419)
+..+.+.+.+..+. .+.++|+.||+++.+ . .+|+++.+.
T Consensus 519 ~te~~i~~~l~~~~-----~~~TvIiItHrl~~i-----~--~aD~Iivl~ 557 (588)
T PRK11174 519 HSEQLVMQALNAAS-----RRQTTLMVTHQLEDL-----A--QWDQIWVMQ 557 (588)
T ss_pred HHHHHHHHHHHHHh-----CCCEEEEEecChHHH-----H--hCCEEEEEe
Confidence 88888888777652 346788999998554 3 567777764
No 423
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=2.1e-06 Score=84.03 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=40.8
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.+|++|| |+++.|......+.++|.++. ..+..||++||+.+.+..
T Consensus 160 l~~~p~lLlLDE-----------Pt~gLD~~~~~~l~~~l~~l~----~~g~tvlivsH~~~~~~~ 210 (287)
T PRK13641 160 MAYEPEILCLDE-----------PAAGLDPEGRKEMMQLFKDYQ----KAGHTVILVTHNMDDVAE 210 (287)
T ss_pred HHcCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHH
Confidence 346799999999 777899999999999998762 246788999998876643
No 424
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.41 E-value=1.6e-06 Score=90.76 Aligned_cols=113 Identities=20% Similarity=0.337 Sum_probs=74.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcc--------h---------h---h-------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE--------L---------V---Q------------- 233 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~--------l---------~---~------------- 233 (419)
++.+.++..+.|.||+|+|||||+++|++.. ..+-+.+++.. + + .
T Consensus 44 SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~ 123 (549)
T PRK13545 44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI 123 (549)
T ss_pred EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH
Confidence 3456788889999999999999999999854 12222222210 0 0 0
Q ss_pred ---------------hhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc
Q 014743 234 ---------------KYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF 296 (419)
Q Consensus 234 ---------------~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~ 296 (419)
+.++...++. +-.+..|....|.||++|| |+++.|+.....+.++|.++.
T Consensus 124 i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE-----------PTsgLD~~sr~~LlelL~el~-- 190 (549)
T PRK13545 124 IPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE-----------ALSVGDQTFTKKCLDKMNEFK-- 190 (549)
T ss_pred HHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH--
Confidence 0001111111 2233344557899999999 677889998888999888762
Q ss_pred ccCCCeEEEEEeCCcchhhH
Q 014743 297 EASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 297 ~~~~~v~VI~tTn~~~~ld~ 316 (419)
..+..||++||+++.+..
T Consensus 191 --~~G~TIIIVSHdl~~i~~ 208 (549)
T PRK13545 191 --EQGKTIFFISHSLSQVKS 208 (549)
T ss_pred --hCCCEEEEEECCHHHHHH
Confidence 235679999999876644
No 425
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=2.8e-06 Score=80.33 Aligned_cols=50 Identities=22% Similarity=0.391 Sum_probs=39.7
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.++++|| |+++.|......+.++|..+. . +..||++||..+.+.
T Consensus 152 al~~~p~lllLDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~ 201 (234)
T cd03251 152 ALLKDPPILILDE-----------ATSALDTESERLVQAALERLM----K-NRTTFVIAHRLSTIE 201 (234)
T ss_pred HHhcCCCEEEEeC-----------ccccCCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHHh
Confidence 4446799999999 677889999999999998773 2 467888999887663
No 426
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.41 E-value=3.2e-06 Score=78.50 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=71.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch---------------------h-----------hh-
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL---------------------V-----------QK- 234 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l---------------------~-----------~~- 234 (419)
+.+.++..+.+.||+|+|||||+++|++.. ...-+.+++..+ . ..
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~ 108 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY 108 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCC
Confidence 456788889999999999999999999753 222233322111 0 00
Q ss_pred -------------hhchhHH--HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC
Q 014743 235 -------------YIGEGSR--MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 299 (419)
Q Consensus 235 -------------~~g~~~~--~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~ 299 (419)
++....+ ..+-.+..|....|.++++|| ++++.|+.....+.++|.++.
T Consensus 109 ~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----- 172 (207)
T cd03369 109 SDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE-----------ATASIDYATDALIQKTIREEF----- 172 (207)
T ss_pred CHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHhc-----
Confidence 0000001 112333444456899999999 667789988888999888762
Q ss_pred CCeEEEEEeCCcchh
Q 014743 300 NKIKVLMATNRIDIL 314 (419)
Q Consensus 300 ~~v~VI~tTn~~~~l 314 (419)
.+..+|++||.++.+
T Consensus 173 ~~~tiii~th~~~~~ 187 (207)
T cd03369 173 TNSTILTIAHRLRTI 187 (207)
T ss_pred CCCEEEEEeCCHHHH
Confidence 256788899987765
No 427
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.41 E-value=3.9e-06 Score=78.85 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=38.2
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
...|.++++|| |+++.|....+.+.+++..+. ..+..||++||+.+.+
T Consensus 165 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 165 IADYPILLLDE-----------PTASLDAANRQVVVELIAEAK----ARGAALIGIFHDEEVR 212 (224)
T ss_pred hcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHH
Confidence 35689999999 677889999999999998773 2357789999986544
No 428
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=2.5e-06 Score=81.58 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=39.1
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| ++++.|+.....+.++|.++. . +..||++||+++.+..
T Consensus 162 ~~~p~lllLDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sH~~~~~~~ 210 (250)
T PRK14247 162 AFQPEVLLADE-----------PTANLDPENTAKIESLFLELK----K-DMTIVLVTHFPQQAAR 210 (250)
T ss_pred hcCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHh----c-CCEEEEEeCCHHHHHH
Confidence 35799999999 677889999999999998872 2 4678999999876543
No 429
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.9e-06 Score=83.33 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.++++|| |+++.|......+.++|.++. ...+..||++||+++.+..
T Consensus 157 al~~~p~llllDE-----------Pt~gLD~~~~~~l~~~L~~l~---~~~~~tiii~tH~~~~~~~ 209 (265)
T PRK10253 157 VLAQETAIMLLDE-----------PTTWLDISHQIDLLELLSELN---REKGYTLAAVLHDLNQACR 209 (265)
T ss_pred HHhcCCCEEEEeC-----------ccccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 3446799999999 667789999999999988762 2235778999999886644
No 430
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.41 E-value=2.6e-06 Score=82.63 Aligned_cols=114 Identities=23% Similarity=0.420 Sum_probs=68.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcc---------hhhhh-------hch------hHHHHHHHHHHHH
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSE---------LVQKY-------IGE------GSRMVRELFVMAR 251 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~---------l~~~~-------~g~------~~~~i~~lf~~a~ 251 (419)
.++++.||||+||||+.++++..+. ..-+.+++.+ +...+ +|. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 6899999999999999999998763 2333333322 22111 110 1111234666777
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH-------HhcCCCce
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ-------ALLRPGRI 324 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~-------allr~gRf 324 (419)
.+.|.||++||+-. .+ .+..++..+. .++.||+|||..+..+- .++..+-|
T Consensus 192 ~~~P~villDE~~~--------------~e---~~~~l~~~~~-----~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 192 SMSPDVIVVDEIGR--------------EE---DVEALLEALH-----AGVSIIATAHGRDVEDLYKRPVFKELIENEAF 249 (270)
T ss_pred hCCCCEEEEeCCCc--------------HH---HHHHHHHHHh-----CCCEEEEEechhHHHHHHhChHHHHHHhcCce
Confidence 78999999999421 12 2333333331 35779999997543221 23445568
Q ss_pred eEEEEcC
Q 014743 325 DRKIEFP 331 (419)
Q Consensus 325 d~~I~~~ 331 (419)
++.+.+.
T Consensus 250 ~r~i~L~ 256 (270)
T TIGR02858 250 ERYVVLS 256 (270)
T ss_pred EEEEEEe
Confidence 8887774
No 431
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.41 E-value=2.4e-06 Score=82.91 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=40.4
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.|+++|| |+++.|+.....+.++|..+. ..+..||++||+++.+..
T Consensus 157 L~~~p~llllDE-----------Pt~~LD~~~~~~l~~~L~~~~----~~g~tviivsH~~~~~~~ 207 (272)
T PRK15056 157 IAQQGQVILLDE-----------PFTGVDVKTEARIISLLRELR----DEGKTMLVSTHNLGSVTE 207 (272)
T ss_pred HhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHH
Confidence 346799999999 777899999999999998773 235679999999876643
No 432
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.41 E-value=2.7e-06 Score=80.09 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=49.7
Q ss_pred HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcC
Q 014743 244 RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLR 320 (419)
Q Consensus 244 ~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr 320 (419)
+-+|.+|.-..|-++++|| +.++.|...+..+...+.++-. ..+...+|+.||..++++|.+-+
T Consensus 179 rvLiaRALv~~P~LLiLDE-----------P~~GLDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 179 RVLIARALVKDPELLILDE-----------PAQGLDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHHhcCCCEEEecC-----------ccccCChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccce
Confidence 4667777788999999999 6677887777777777777642 34467788999999999887754
No 433
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.41 E-value=2.2e-06 Score=91.88 Aligned_cols=119 Identities=26% Similarity=0.362 Sum_probs=78.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.++++..+.+.||+|+|||||++.|++.. ..+-+.+++.++-
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 443 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE 443 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC
Confidence 446788889999999999999999999864 2344555543210
Q ss_pred --------------------hh-------hhch----hHHHHHHHH--HHHHhhCCceEEecccccccccccCCCCCCCC
Q 014743 233 --------------------QK-------YIGE----GSRMVRELF--VMAREHAPSIIFMDEIDSIGSARMESGSGNGD 279 (419)
Q Consensus 233 --------------------~~-------~~g~----~~~~i~~lf--~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~ 279 (419)
.+ .+|+ ..++-++-+ .+|.-..|.|+++|| ++++.|
T Consensus 444 ~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDE-----------ptsaLD 512 (582)
T PRK11176 444 QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE-----------ATSALD 512 (582)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEEC-----------ccccCC
Confidence 00 0111 122223333 334457899999999 667788
Q ss_pred HHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcC
Q 014743 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331 (419)
Q Consensus 280 ~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~ 331 (419)
++....+.+.+..+. .+.++|+.||+++.+ + .+|+++.+.
T Consensus 513 ~~t~~~i~~~l~~~~-----~~~tvI~VtHr~~~~-----~--~~D~Ii~l~ 552 (582)
T PRK11176 513 TESERAIQAALDELQ-----KNRTSLVIAHRLSTI-----E--KADEILVVE 552 (582)
T ss_pred HHHHHHHHHHHHHHh-----CCCEEEEEecchHHH-----H--hCCEEEEEE
Confidence 888888887776652 346788889997543 3 566666664
No 434
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.40 E-value=2.5e-06 Score=76.24 Aligned_cols=120 Identities=23% Similarity=0.353 Sum_probs=77.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhc--cCCceEEEeCcc--------------------------------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSE-------------------------------------- 230 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~--~~~~~i~v~~s~-------------------------------------- 230 (419)
-+.++..+-+.||+|+|||||.-.+|.- ....-+++.+..
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 4578889999999999999999999951 111122221111
Q ss_pred ---------------------------hhhhhhchhHHHHHHH--HHHHHhhCCceEEecccccccccccCCCCCCCCHH
Q 014743 231 ---------------------------LVQKYIGEGSRMVREL--FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 231 ---------------------------l~~~~~g~~~~~i~~l--f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
-+..|+++..+.-++- +..|....|.|+|-|| |+++.|.+
T Consensus 112 PleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADE-----------PTGNLD~~ 180 (228)
T COG4181 112 PLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADE-----------PTGNLDRA 180 (228)
T ss_pred hhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccC-----------CCCCcchh
Confidence 1233555544443343 4444556799999999 77778887
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcC
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~ 331 (419)
.-..+..+|-.+. ...+..+|+.||++. +-. |+++.+.+.
T Consensus 181 Tg~~iaDLlF~ln---re~G~TlVlVTHD~~-----LA~--Rc~R~~r~~ 220 (228)
T COG4181 181 TGDKIADLLFALN---RERGTTLVLVTHDPQ-----LAA--RCDRQLRLR 220 (228)
T ss_pred HHHHHHHHHHHHh---hhcCceEEEEeCCHH-----HHH--hhhheeeee
Confidence 7777777765552 456788899999654 333 666665543
No 435
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=2.5e-06 Score=81.84 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=40.9
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.++++|| |+++.|......+.++|..+. ...+..||++||..+.+..
T Consensus 169 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~L~~~~---~~~~~tii~~sH~~~~~~~ 219 (255)
T PRK11300 169 VTQPEILMLDE-----------PAAGLNPKETKELDELIAELR---NEHNVTVLLIEHDMKLVMG 219 (255)
T ss_pred hcCCCEEEEcC-----------CccCCCHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHHHHHH
Confidence 36799999999 777899999999999988763 2236789999999887644
No 436
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.40 E-value=2.5e-06 Score=81.87 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=40.5
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.|+++|| ++++.|......+.++|..+. ...+..||++||+++.+.
T Consensus 154 al~~~p~lLlLDE-----------Pt~~LD~~~~~~l~~~L~~~~---~~~g~til~~sH~~~~~~ 205 (254)
T PRK10418 154 ALLCEAPFIIADE-----------PTTDLDVVAQARILDLLESIV---QKRALGMLLVTHDMGVVA 205 (254)
T ss_pred HHhcCCCEEEEeC-----------CCcccCHHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHHH
Confidence 3346799999999 677789988888999888762 223578999999887764
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.39 E-value=2.5e-06 Score=77.38 Aligned_cols=104 Identities=20% Similarity=0.259 Sum_probs=61.6
Q ss_pred EEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhh------hc-----------------------hhH-----
Q 014743 198 VLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKY------IG-----------------------EGS----- 240 (419)
Q Consensus 198 iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~------~g-----------------------~~~----- 240 (419)
+|++||||||||+++..++... +..++.++..+-.... .| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999887643 4555555542211100 00 000
Q ss_pred HHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 241 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 241 ~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
..+..+...+....|.+|+||++..+... ........+..++..+. ..++.+|++++....
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~--------~~~~~~~~i~~l~~~l~----~~g~tvi~v~~~~~~ 142 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM--------EQSTARLEIRRLLFALK----RFGVTTLLTSEQSGL 142 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc--------ChHHHHHHHHHHHHHHH----HCCCEEEEEeccccC
Confidence 11244555566778999999999886431 11233344555665553 236778888876553
No 438
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.39 E-value=1.2e-06 Score=88.31 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccCC-ceEEEeCcchhhhhhch------hHHHHHHHHHHHHhhCCceEEecccc
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTDC-TFIRVSGSELVQKYIGE------GSRMVRELFVMAREHAPSIIFMDEID 264 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~~-~~i~v~~s~l~~~~~g~------~~~~i~~lf~~a~~~~psVl~iDEiD 264 (419)
..+|+|+.||||+|+|||+|+-.....+.. .-.++.-.+++...... ...-+..+... ......||.|||+.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~-l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADE-LAKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHH-HHhcCCEEEEeeee
Confidence 467999999999999999999999887754 23333333443321111 01112222222 22334599999987
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 265 SIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 265 ~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
- .|..-.-+|..++..+ -..++++|+|||++
T Consensus 138 V------------~DiaDAmil~rLf~~l----~~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 V------------TDIADAMILKRLFEAL----FKRGVVLVATSNRP 168 (362)
T ss_pred c------------cchhHHHHHHHHHHHH----HHCCCEEEecCCCC
Confidence 7 2222333444555554 24689999999985
No 439
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.39 E-value=2.8e-06 Score=82.20 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=40.1
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.||++|| |+++.|+.....+.++|.++. ...+..||++||+++.+.
T Consensus 164 l~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~g~tviivsH~~~~~~ 214 (267)
T PRK15112 164 LILRPKVIIADE-----------ALASLDMSMRSQLINLMLELQ---EKQGISYIYVTQHLGMMK 214 (267)
T ss_pred HHhCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HHcCcEEEEEeCCHHHHH
Confidence 346799999999 677889999989999888763 223577899999987664
No 440
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=2.5e-06 Score=83.35 Aligned_cols=50 Identities=28% Similarity=0.422 Sum_probs=39.8
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
....|.+|++|| ++.+.|......+.++|.++. ...+..||++||..+.+
T Consensus 158 l~~~P~llllDE-----------Pt~gLD~~~~~~l~~~l~~l~---~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 158 LAVEPKIIILDE-----------STSMLDPAGKEQILKLIRKLK---KKNNLTVISITHDIDEA 207 (282)
T ss_pred HHcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 346799999999 677899999999999988763 22367889999998766
No 441
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.39 E-value=2e-06 Score=85.88 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=41.4
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.+|++|| ++++.|...+..+.++|..+. ...+..+|++||+.+.+.
T Consensus 175 AL~~~P~llilDE-----------Pts~LD~~~~~~i~~lL~~l~---~~~g~til~iTHdl~~~~ 226 (330)
T PRK09473 175 ALLCRPKLLIADE-----------PTTALDVTVQAQIMTLLNELK---REFNTAIIMITHDLGVVA 226 (330)
T ss_pred HHHcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH---HHcCCEEEEEECCHHHHH
Confidence 3346799999999 777899999999999888773 234678999999987654
No 442
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=2.8e-06 Score=83.38 Aligned_cols=51 Identities=16% Similarity=0.388 Sum_probs=40.7
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.||++|| ++++.|+.....+.++|.++. ...+..||++||+.+.+..
T Consensus 161 ~~~P~llllDE-----------Pt~~LD~~~~~~l~~~L~~l~---~~~g~tviiitHd~~~~~~ 211 (290)
T PRK13634 161 AMEPEVLVLDE-----------PTAGLDPKGRKEMMEMFYKLH---KEKGLTTVLVTHSMEDAAR 211 (290)
T ss_pred HcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 46799999999 677899999999999888762 2346789999999886644
No 443
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=2.7e-06 Score=80.77 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=40.8
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.++++|| ++++.|...+..+.++|.++. ...+..||++||.++.+..
T Consensus 143 al~~~p~llllDE-----------Pt~gLD~~~~~~l~~~l~~~~---~~~~~tili~tH~~~~~~~ 195 (235)
T cd03299 143 ALVVNPKILLLDE-----------PFSALDVRTKEKLREELKKIR---KEFGVTVLHVTHDFEEAWA 195 (235)
T ss_pred HHHcCCCEEEECC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHHH
Confidence 3446799999999 677889999999999888762 2225678999998876643
No 444
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.38 E-value=3.2e-06 Score=80.37 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=40.6
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.|+++|| |+++.|+.....+.+++..+. . +..||++||..+.+..
T Consensus 158 l~~~p~~lllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tii~~sH~~~~~~~ 207 (242)
T TIGR03411 158 LMQDPKLLLLDE-----------PVAGMTDEETEKTAELLKSLA----G-KHSVVVVEHDMEFVRS 207 (242)
T ss_pred HhcCCCEEEecC-----------CccCCCHHHHHHHHHHHHHHh----c-CCEEEEEECCHHHHHH
Confidence 346799999999 777899999999999998873 2 3679999999887654
No 445
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.38 E-value=3.4e-06 Score=79.35 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=38.7
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
....|.++++|| |+.+.|......+.+++.++. . +..||++||.++.+
T Consensus 165 l~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 212 (226)
T cd03248 165 LIRNPQVLILDE-----------ATSALDAESEQQVQQALYDWP----E-RRTVLVIAHRLSTV 212 (226)
T ss_pred HhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHc----C-CCEEEEEECCHHHH
Confidence 346799999999 677899999999999998763 2 36789999987765
No 446
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.38 E-value=2.9e-06 Score=81.03 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=39.1
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.++++|| |+++.|+.....+.+++..+. .+ ..||++||+++.+..
T Consensus 160 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~~-~tiiivsH~~~~~~~ 208 (247)
T TIGR00972 160 AVEPEVLLLDE-----------PTSALDPIATGKIEELIQELK----KK-YTIVIVTHNMQQAAR 208 (247)
T ss_pred hcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----hc-CeEEEEecCHHHHHH
Confidence 35799999999 677889999999999998773 22 678999999886644
No 447
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.38 E-value=2.1e-06 Score=85.84 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=41.8
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.+|++|| ++++.|...+..+.++|.++. ...+..+|++||+.+.+..
T Consensus 175 AL~~~P~llilDE-----------Pts~LD~~~~~~i~~lL~~l~---~~~~~til~iTHdl~~~~~ 227 (331)
T PRK15079 175 ALILEPKLIICDE-----------PVSALDVSIQAQVVNLLQQLQ---REMGLSLIFIAHDLAVVKH 227 (331)
T ss_pred HHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHHHH
Confidence 3346799999999 777899999999999998873 2346789999999876643
No 448
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=2.7e-06 Score=84.71 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=41.1
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| ++++.|+.....+.++|..+. ..+..||++||+.+.+..
T Consensus 190 aL~~~p~iLLLDE-----------PtsgLD~~~~~~l~~~L~~l~----~~g~TiiivtHd~~~~~~ 241 (320)
T PRK13631 190 ILAIQPEILIFDE-----------PTAGLDPKGEHEMMQLILDAK----ANNKTVFVITHTMEHVLE 241 (320)
T ss_pred HHHcCCCEEEEEC-----------CccCCCHHHHHHHHHHHHHHH----HCCCEEEEEecCHHHHHH
Confidence 3346799999999 777899999999999998763 236779999999886643
No 449
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.38 E-value=2.6e-06 Score=90.39 Aligned_cols=106 Identities=22% Similarity=0.269 Sum_probs=70.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.++++..+.+.||+|+|||||++.+++.. ..+-+.+++.++.
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~ 435 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDA 435 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCC
Confidence 456788999999999999999999999854 3334555442110
Q ss_pred ------------------h-------hhhch----hHHHHHHHHH--HHHhhCCceEEecccccccccccCCCCCCCCHH
Q 014743 233 ------------------Q-------KYIGE----GSRMVRELFV--MAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 233 ------------------~-------~~~g~----~~~~i~~lf~--~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
. ..+|+ ..++-++.+. +|.-..|.|+++|| ++++.|++
T Consensus 436 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE-----------~TSaLD~~ 504 (529)
T TIGR02868 436 TDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE-----------PTEHLDAG 504 (529)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CcccCCHH
Confidence 0 01111 1222334333 34457899999999 56678888
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
....+.+.+..+ ..+.++|+.||++
T Consensus 505 te~~I~~~l~~~-----~~~~TvIiItHrl 529 (529)
T TIGR02868 505 TESELLEDLLAA-----LSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHh-----cCCCEEEEEecCC
Confidence 888888887765 2346778888863
No 450
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.38 E-value=2.1e-06 Score=90.85 Aligned_cols=112 Identities=13% Similarity=0.206 Sum_probs=74.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.+.++..+.|.||+|+|||||+++|++.+ ...-+.+++..+.
T Consensus 32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 111 (510)
T PRK15439 32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL 111 (510)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccc
Confidence 456778889999999999999999999854 2223333321110
Q ss_pred -----------------------hhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHH
Q 014743 233 -----------------------QKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML 287 (419)
Q Consensus 233 -----------------------~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~ 287 (419)
.+.++...++. +-.+..|....|.||++|| |+++.|+.....+.
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE-----------Pt~~LD~~~~~~l~ 180 (510)
T PRK15439 112 PKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE-----------PTASLTPAETERLF 180 (510)
T ss_pred ccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CCCCCCHHHHHHHH
Confidence 00011111111 2233334456899999999 77889999999999
Q ss_pred HHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 288 ELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 288 ~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
++|.++. ..+..||++||+++.+..
T Consensus 181 ~~l~~~~----~~g~tiiivtHd~~~~~~ 205 (510)
T PRK15439 181 SRIRELL----AQGVGIVFISHKLPEIRQ 205 (510)
T ss_pred HHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 9998873 235679999999876643
No 451
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.38 E-value=2.9e-06 Score=91.25 Aligned_cols=118 Identities=23% Similarity=0.369 Sum_probs=77.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.++++..+.+.||+|+|||||++.+++.. ..+-+.+++.++.
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 435 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD 435 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC
Confidence 346788899999999999999999999854 2334555442210
Q ss_pred -------------------hh-------hhch----hHHHHHH--HHHHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 233 -------------------QK-------YIGE----GSRMVRE--LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 233 -------------------~~-------~~g~----~~~~i~~--lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.+ .+|+ ..++-++ .+.+|.-+.|.|+++|| ++++.|+
T Consensus 436 ~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDE-----------pts~LD~ 504 (588)
T PRK13657 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDE-----------ATSALDV 504 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCH
Confidence 00 0111 1112223 33334457899999999 6667888
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEc
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEF 330 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~ 330 (419)
.....+.+.+..+. .+.++|+.||+++.+ + .+|+++.+
T Consensus 505 ~t~~~i~~~l~~~~-----~~~tvIiitHr~~~~-----~--~~D~ii~l 542 (588)
T PRK13657 505 ETEAKVKAALDELM-----KGRTTFIIAHRLSTV-----R--NADRILVF 542 (588)
T ss_pred HHHHHHHHHHHHHh-----cCCEEEEEEecHHHH-----H--hCCEEEEE
Confidence 88888888776652 356788899987543 3 45666655
No 452
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.38 E-value=2.8e-06 Score=82.18 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=40.3
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.||++|| ++++.|......+.++|.++. ...+..||++||+++.+..
T Consensus 165 l~~~p~illLDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~g~tiiivsH~~~~~~~ 216 (265)
T TIGR02769 165 LAVKPKLIVLDE-----------AVSNLDMVLQAVILELLRKLQ---QAFGTAYLFITHDLRLVQS 216 (265)
T ss_pred HhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHHHH
Confidence 346799999999 677889988888888888763 2235779999999886643
No 453
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.37 E-value=3.5e-06 Score=79.36 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=36.7
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
....|.|+++|| |+++.|+..+..+.+++.++. ..+..||++||..
T Consensus 158 l~~~p~illlDE-----------P~~gLD~~~~~~~~~~l~~~~----~~~~tiii~sh~~ 203 (226)
T cd03234 158 LLWDPKVLILDE-----------PTSGLDSFTALNLVSTLSQLA----RRNRIVILTIHQP 203 (226)
T ss_pred HHhCCCEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEecCC
Confidence 345799999999 677889999999999998763 2356788899887
No 454
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.37 E-value=2.9e-06 Score=91.28 Aligned_cols=118 Identities=23% Similarity=0.323 Sum_probs=78.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhh----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ---------------------------------- 233 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~---------------------------------- 233 (419)
+.++++..+.+.||+|+|||||++.|++.. ..+-+.+++.++..
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~ 441 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDI 441 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCC
Confidence 456788999999999999999999999864 33455565533210
Q ss_pred -------------------h-------hhch----hHHHHHHH--HHHHHhhCCceEEecccccccccccCCCCCCCCHH
Q 014743 234 -------------------K-------YIGE----GSRMVREL--FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 234 -------------------~-------~~g~----~~~~i~~l--f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
+ .+|+ ..++.++- +.+|.-..|.|+++|| ++++.|++
T Consensus 442 ~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDE-----------pts~LD~~ 510 (592)
T PRK10790 442 SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE-----------ATANIDSG 510 (592)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeC-----------CcccCCHH
Confidence 0 0111 11222333 3334456789999999 67778998
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEc
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEF 330 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~ 330 (419)
....+.+.+..+. .+.++|+.||+++.+. .+|+++.+
T Consensus 511 t~~~i~~~l~~~~-----~~~tvIivtHr~~~l~-------~~D~ii~l 547 (592)
T PRK10790 511 TEQAIQQALAAVR-----EHTTLVVIAHRLSTIV-------EADTILVL 547 (592)
T ss_pred HHHHHHHHHHHHh-----CCCEEEEEecchHHHH-------hCCEEEEE
Confidence 8888888887652 2467889999975543 45555555
No 455
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.37 E-value=3.2e-06 Score=81.93 Aligned_cols=53 Identities=23% Similarity=0.383 Sum_probs=40.7
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.||++|| |+++.|......+.+++.++. ...+..||++||+++.+..
T Consensus 165 al~~~p~lllLDE-----------Pt~~LD~~~~~~~~~~l~~~~---~~~~~tiiivsH~~~~i~~ 217 (268)
T PRK10419 165 ALAVEPKLLILDE-----------AVSNLDLVLQAGVIRLLKKLQ---QQFGTACLFITHDLRLVER 217 (268)
T ss_pred HHhcCCCEEEEeC-----------CCcccCHHHHHHHHHHHHHHH---HHcCcEEEEEECCHHHHHH
Confidence 3346799999999 677789888888888887762 2236789999999876654
No 456
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.6e-06 Score=82.90 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=40.8
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.+|++|| ++++.|......+.+++..+. ...+..||++||+.+.+.
T Consensus 154 aL~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~l~---~~~g~tiil~sH~~~~~~ 205 (277)
T PRK13642 154 IIALRPEIIILDE-----------STSMLDPTGRQEIMRVIHEIK---EKYQLTVLSITHDLDEAA 205 (277)
T ss_pred HHHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 3346799999999 667889999999999888762 233677899999988774
No 457
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=3.9e-06 Score=80.50 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=38.9
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
..|.++++|| ++++.|......+.++|..+. . +..||++||+++.+..
T Consensus 167 ~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tvii~sH~~~~~~~ 214 (254)
T PRK14273 167 IEPNVILMDE-----------PTSALDPISTGKIEELIINLK----E-SYTIIIVTHNMQQAGR 214 (254)
T ss_pred cCCCEEEEeC-----------CCcccCHHHHHHHHHHHHHHh----c-CCEEEEEeCCHHHHHH
Confidence 5699999999 677889999999999998873 2 3678899999886643
No 458
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.36 E-value=6.6e-06 Score=77.03 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=25.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
+.+.++..+.|.||+|+|||||++.|++.
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45677888999999999999999999974
No 459
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=3e-06 Score=84.64 Aligned_cols=59 Identities=22% Similarity=0.470 Sum_probs=45.0
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH-----HhcCCCce
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ-----ALLRPGRI 324 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~-----allr~gRf 324 (419)
...|.||++|| ++++.|...+..+.++|.++. ...+..||++||+.+.+.. .++..||+
T Consensus 174 ~~~P~llilDE-----------Pts~LD~~~~~~i~~lL~~l~---~~~g~tii~itHdl~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 174 ANQPRLLIADE-----------PTNAMEPTTQAQIFRLLTRLN---QNNNTTILLISHDLQMLSQWADKINVLYCGQT 237 (330)
T ss_pred HCCCCEEEEeC-----------CCCcCCHHHHHHHHHHHHHHH---HhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 35699999999 777899999999999998873 2346789999999876643 23455554
No 460
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.35 E-value=3.8e-06 Score=80.48 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=39.2
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| ++++.|......+.++|.++. . +..||++||+.+.+..
T Consensus 165 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tvii~tH~~~~~~~ 213 (253)
T PRK14242 165 AVEPEVLLMDE-----------PASALDPIATQKIEELIHELK----A-RYTIIIVTHNMQQAAR 213 (253)
T ss_pred hcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHh----c-CCeEEEEEecHHHHHH
Confidence 35799999999 677889999999999998873 2 3678999999876643
No 461
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=4.8e-06 Score=79.60 Aligned_cols=49 Identities=20% Similarity=0.391 Sum_probs=39.4
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| ++++.|......+.++|.++. . +..||++||+++.+..
T Consensus 161 ~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~~ 209 (249)
T PRK14253 161 AMEPDVILMDE-----------PTSALDPIATHKIEELMEELK----K-NYTIVIVTHSMQQARR 209 (249)
T ss_pred HcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEecCHHHHHH
Confidence 35699999999 667789999999999998873 2 3678999998876554
No 462
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.35 E-value=4.3e-06 Score=80.11 Aligned_cols=52 Identities=29% Similarity=0.455 Sum_probs=40.5
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
....|.|+++|| ++++.|+.....+.+++.++. ...+..||++||..+.+..
T Consensus 163 l~~~p~vlllDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tii~vsH~~~~~~~ 214 (253)
T TIGR02323 163 LVTRPRLVFMDE-----------PTGGLDVSVQARLLDLLRGLV---RDLGLAVIIVTHDLGVARL 214 (253)
T ss_pred HhcCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHH
Confidence 346799999999 677889999999998887752 2336788999999876654
No 463
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.35 E-value=3.8e-06 Score=92.28 Aligned_cols=116 Identities=23% Similarity=0.274 Sum_probs=76.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.++++..+.+.||+|+|||||++.|++.. ..+-+.+++.++.
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~ 579 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT 579 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCC
Confidence 456788899999999999999999999854 3344555442220
Q ss_pred -------------------hh-------hhch----hHHHHHHH--HHHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 233 -------------------QK-------YIGE----GSRMVREL--FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 233 -------------------~~-------~~g~----~~~~i~~l--f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.. .+|+ ..++.++. +.+|.-..|.|+++|| ++++.|+
T Consensus 580 ~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE-----------ptS~LD~ 648 (710)
T TIGR03796 580 IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE-----------ATSALDP 648 (710)
T ss_pred CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC-----------ccccCCH
Confidence 00 0111 11222333 3344457899999999 6677888
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEc
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEF 330 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~ 330 (419)
.....+.+.+.. .+.++|+.||+++.+. .+|+++.+
T Consensus 649 ~te~~i~~~l~~-------~~~T~IiitHrl~~i~-------~~D~Iivl 684 (710)
T TIGR03796 649 ETEKIIDDNLRR-------RGCTCIIVAHRLSTIR-------DCDEIIVL 684 (710)
T ss_pred HHHHHHHHHHHh-------cCCEEEEEecCHHHHH-------hCCEEEEE
Confidence 888888877754 2467888999986553 34555555
No 464
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.34 E-value=3.9e-06 Score=80.06 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=40.4
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.|+++|| |+++.|......+.+++..+. ..+..||++||+.+.+..
T Consensus 159 al~~~p~illLDE-----------Pt~~LD~~~~~~l~~~l~~l~----~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 159 MAVLEPELCILDE-----------SDSGLDIDALKIVADGVNSLR----DGKRSFIIVTHYQRILDY 210 (248)
T ss_pred HHHcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHh
Confidence 4446799999999 777899998888988888763 235678999998776543
No 465
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.34 E-value=2.8e-06 Score=89.55 Aligned_cols=52 Identities=13% Similarity=0.267 Sum_probs=41.4
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.+|++|| |+++.|+.....+.+++.++. ..+..||++||+.+.+..
T Consensus 155 al~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~l~----~~~~tvii~sHd~~~~~~ 206 (501)
T PRK10762 155 VLSFESKVIIMDE-----------PTDALTDTETESLFRVIRELK----SQGRGIVYISHRLKEIFE 206 (501)
T ss_pred HHhcCCCEEEEeC-----------CcCCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 3446799999999 778899999999999998873 235678999999876654
No 466
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.34 E-value=4.3e-06 Score=81.47 Aligned_cols=110 Identities=21% Similarity=0.236 Sum_probs=72.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc-CCceEEEeCcchh------------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSELV------------------------------------ 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~-~~~~i~v~~s~l~------------------------------------ 232 (419)
+.+.++..+.|.||+|+|||||+++|++.+ ...-+.+++.++.
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~ 104 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWS 104 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCC
Confidence 456788899999999999999999999754 1222333331110
Q ss_pred -----------------hhhhch-----------hHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHH
Q 014743 233 -----------------QKYIGE-----------GSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 233 -----------------~~~~g~-----------~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
..+++. ..... +-.+..|....|.|+++|| ++++.|+..
T Consensus 105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDE-----------pts~LD~~~ 173 (275)
T cd03289 105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE-----------PSAHLDPIT 173 (275)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC-----------ccccCCHHH
Confidence 001110 11112 2233344457799999999 666788888
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
...+.+++.+.. .+..||++||+.+.+.
T Consensus 174 ~~~l~~~l~~~~-----~~~tii~isH~~~~i~ 201 (275)
T cd03289 174 YQVIRKTLKQAF-----ADCTVILSEHRIEAML 201 (275)
T ss_pred HHHHHHHHHHhc-----CCCEEEEEECCHHHHH
Confidence 888888888652 2577899999987653
No 467
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=4e-06 Score=80.33 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=38.6
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
..|.+|++|| +.++.|......+.++|.++. . +..||++||+++.+..
T Consensus 165 ~~p~llllDE-----------P~~gLD~~~~~~l~~~l~~~~----~-~~tiiivsH~~~~~~~ 212 (252)
T PRK14256 165 VKPEVILMDE-----------PASALDPISTLKIEELIEELK----E-KYTIIIVTHNMQQAAR 212 (252)
T ss_pred cCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH----h-CCcEEEEECCHHHHHh
Confidence 5689999999 677889998999999998873 2 2578999998876654
No 468
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=7.6e-06 Score=72.36 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
+.+..+.++||||+||||++.-++..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 456789999999999999999999755
No 469
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.34 E-value=4.3e-06 Score=88.67 Aligned_cols=117 Identities=26% Similarity=0.347 Sum_probs=76.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.++++..+.+.||+|+|||||++.|++.. ..+-+.+++.++.
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~ 422 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD 422 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC
Confidence 456788899999999999999999999854 2233444332110
Q ss_pred -------------------hh-------hhch----hHHHHHHHH--HHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 233 -------------------QK-------YIGE----GSRMVRELF--VMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 233 -------------------~~-------~~g~----~~~~i~~lf--~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.+ .+|+ ..++.++-+ .+|.-..|.|+++|| ++++.|+
T Consensus 423 ~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE-----------~ts~lD~ 491 (529)
T TIGR02857 423 ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE-----------PTAHLDA 491 (529)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------cccccCH
Confidence 00 0111 112223333 334456799999999 5667888
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEE
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIE 329 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~ 329 (419)
...+.+.+.+..+. .+.++|+.||+++.+ + .+|+++.
T Consensus 492 ~~~~~i~~~l~~~~-----~~~t~i~itH~~~~~-----~--~~d~i~~ 528 (529)
T TIGR02857 492 ETEALVTEALRALA-----QGRTVLLVTHRLALA-----E--RADRIVV 528 (529)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEEEecCHHHH-----H--hCCEEEe
Confidence 88888888887652 356788899987543 3 4566554
No 470
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=5e-06 Score=79.49 Aligned_cols=49 Identities=20% Similarity=0.355 Sum_probs=38.7
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| ++++.|......+.+++..+. . +..||++||+++.+..
T Consensus 162 ~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tili~sH~~~~~~~ 210 (250)
T PRK14262 162 AVEPEVILLDE-----------PTSALDPIATQRIEKLLEELS----E-NYTIVIVTHNIGQAIR 210 (250)
T ss_pred hCCCCEEEEeC-----------CccccCHHHHHHHHHHHHHHh----c-CcEEEEEeCCHHHHHH
Confidence 35799999999 667789999999999998773 2 3678999998876543
No 471
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.34 E-value=4.2e-06 Score=91.72 Aligned_cols=118 Identities=24% Similarity=0.333 Sum_probs=77.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.++++..+.+.||+|+|||||++.|++.. ..+-+.+++.++.
T Consensus 486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~ 565 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY 565 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCC
Confidence 456788899999999999999999999854 2344555442210
Q ss_pred -------------------hh-------hhch----hHHHHHHHHHH--HHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 233 -------------------QK-------YIGE----GSRMVRELFVM--AREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 233 -------------------~~-------~~g~----~~~~i~~lf~~--a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.. .+|+ ..++.++.+.. |.-..|.|+++|| ++++.|+
T Consensus 566 ~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE-----------~Ts~LD~ 634 (694)
T TIGR03375 566 ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE-----------PTSAMDN 634 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CCCCCCH
Confidence 00 0111 12223333333 4457899999999 5667899
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEc
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEF 330 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~ 330 (419)
.....+.+.+..+. .+.++|+.||+++.+. .+|+++.+
T Consensus 635 ~te~~i~~~l~~~~-----~~~T~iiItHrl~~~~-------~~D~iivl 672 (694)
T TIGR03375 635 RSEERFKDRLKRWL-----AGKTLVLVTHRTSLLD-------LVDRIIVM 672 (694)
T ss_pred HHHHHHHHHHHHHh-----CCCEEEEEecCHHHHH-------hCCEEEEE
Confidence 88888888887662 3567888999986542 44555554
No 472
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.33 E-value=3.3e-06 Score=85.87 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=40.7
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.|+++|| +.++.|+..+..+.++|.++. ...+..||++||+.+.+.
T Consensus 178 ALa~~P~ILLlDE-----------Pts~LD~~~r~~l~~~L~~l~---~~~~~TII~iTHdl~e~~ 229 (382)
T TIGR03415 178 AFAMDADILLMDE-----------PFSALDPLIRTQLQDELLELQ---AKLNKTIIFVSHDLDEAL 229 (382)
T ss_pred HHhcCCCEEEEEC-----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 3346799999999 677899999998988887763 233678999999988653
No 473
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.33 E-value=3.4e-06 Score=87.56 Aligned_cols=114 Identities=25% Similarity=0.394 Sum_probs=72.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhh------hch--------hHHHHHHHHHHHHhh
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKY------IGE--------GSRMVRELFVMAREH 253 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~------~g~--------~~~~i~~lf~~a~~~ 253 (419)
|+.++..++|+||||+|||+|+..+|... +..+++++..+-.... .|. .+..+..+++.+...
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67888889999999999999999998754 5567777765433221 111 122356777777788
Q ss_pred CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 254 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 254 ~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
.|.+|+||++..+.....++. .+...++...+.+|.... ...++.+|++++
T Consensus 156 ~~~lVVIDSIq~l~~~~~~~~-~g~~~qvr~~~~~L~~~a----k~~~itvilv~h 206 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPELESA-PGSVSQVRECAAELMRLA----KQRGIAVFLVGH 206 (446)
T ss_pred CCCEEEEechhhhccccccCC-CCCHHHHHHHHHHHHHHH----HHcCCEEEEEee
Confidence 999999999998865432211 111123333333333332 345677777755
No 474
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.33 E-value=2.9e-06 Score=79.84 Aligned_cols=119 Identities=22% Similarity=0.365 Sum_probs=68.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh----hhhhc-------------------hhHHHHH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV----QKYIG-------------------EGSRMVR 244 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~----~~~~g-------------------~~~~~i~ 244 (419)
|++.+.-++++||||+|||+++..+|.+. +...+.++...+. ....+ +....++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 67778889999999999999999998643 5667777765221 11001 0011122
Q ss_pred HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 245 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 245 ~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
.+..... ..+.+|+||-+.+++...... ........+.+.+++..+..+....++.||+|.....
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~--~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~ 163 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED--EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYS 163 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcccee
Confidence 2222222 688999999999886532110 0111222334444444343333456788888765443
No 475
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.33 E-value=3.6e-06 Score=83.41 Aligned_cols=121 Identities=19% Similarity=0.274 Sum_probs=73.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh----------------hhchhHHHHHHHHHHHH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK----------------YIGEGSRMVRELFVMAR 251 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~----------------~~g~~~~~i~~lf~~a~ 251 (419)
|+++++.++++||||||||+|+-.++... +...+.++..+-... .+...+..+..+...++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67788889999999999999988776533 556667765432211 11122333334444456
Q ss_pred hhCCceEEecccccccccc-cCCCCCCCCH-HHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 252 EHAPSIIFMDEIDSIGSAR-MESGSGNGDS-EVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r-~~~~~~~~~~-~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
...+.+|++|-+-++.+.. .+...+..+. .-.+.+.++|..+...-...++.+|+|....
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr 192 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIR 192 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecce
Confidence 6789999999999987642 1111011111 1224445666666555567788888886533
No 476
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=5.1e-06 Score=80.58 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=38.6
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
...|.||++|| |+++.|+.....+.++|.++. . +..||++||+++.+.
T Consensus 170 ~~~p~lllLDE-----------Pt~gLD~~~~~~l~~~l~~~~----~-~~tiiivtH~~~~~~ 217 (269)
T PRK14259 170 AIEPEVILMDE-----------PCSALDPISTLKIEETMHELK----K-NFTIVIVTHNMQQAV 217 (269)
T ss_pred hcCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHh----c-CCEEEEEeCCHHHHH
Confidence 35699999999 677899999999999998873 2 367899999877654
No 477
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.33 E-value=4.3e-06 Score=91.56 Aligned_cols=108 Identities=27% Similarity=0.398 Sum_probs=72.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~---------------------------------- 232 (419)
++.++++..+.+.||+|||||||++.|++.. ..+-+.+++.++.
T Consensus 473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~ 552 (686)
T TIGR03797 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP 552 (686)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC
Confidence 3456889999999999999999999999854 3344555442210
Q ss_pred -------------------hh-------hhch----hHHHHHHHHHH--HHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 233 -------------------QK-------YIGE----GSRMVRELFVM--AREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 233 -------------------~~-------~~g~----~~~~i~~lf~~--a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.. .+|+ ..++-++.+.. |.-..|.|+++|| ++++.|+
T Consensus 553 ~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE-----------pTS~LD~ 621 (686)
T TIGR03797 553 LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE-----------ATSALDN 621 (686)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCH
Confidence 00 0111 12233344433 4457899999999 6677888
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
...+.+.+.+..+ +.++|+.||+++.+
T Consensus 622 ~te~~i~~~L~~~-------~~T~IiItHr~~~i 648 (686)
T TIGR03797 622 RTQAIVSESLERL-------KVTRIVIAHRLSTI 648 (686)
T ss_pred HHHHHHHHHHHHh-------CCeEEEEecChHHH
Confidence 8888888877664 24688999998655
No 478
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.33 E-value=5.1e-06 Score=80.06 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=38.8
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| ++++.|......+.++|.++. . +..||++||+++.+..
T Consensus 172 ~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~L~~~~----~-~~tiii~sH~~~~~~~ 220 (260)
T PRK10744 172 AIRPEVLLLDE-----------PCSALDPISTGRIEELITELK----Q-DYTVVIVTHNMQQAAR 220 (260)
T ss_pred HCCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEeCCHHHHHH
Confidence 35799999999 677889999999999998873 2 3578899998876543
No 479
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.33 E-value=3.6e-06 Score=88.96 Aligned_cols=109 Identities=23% Similarity=0.358 Sum_probs=72.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----------CCceEEEeCcchh-------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----------DCTFIRVSGSELV------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----------~~~~i~v~~s~l~------------------------- 232 (419)
++.++++..+|+.||+|||||+|.|+||+-. +...+.+.-..++
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHH
Confidence 4567899999999999999999999999742 1112222111000
Q ss_pred -----------hh------hhc--hhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHc
Q 014743 233 -----------QK------YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 293 (419)
Q Consensus 233 -----------~~------~~g--~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l 293 (419)
.+ |-. ......|-.|.++.-++|.++||||. +++.|++....|.+++.+-
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA-----------TsALDe~~e~~l~q~l~~~ 561 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA-----------TSALDEETEDRLYQLLKEE 561 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc-----------hhccChHHHHHHHHHHHhh
Confidence 00 000 01112345666667799999999993 4567888888899888652
Q ss_pred cccccCCCeEEEEEeCCcch
Q 014743 294 DGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 294 ~~~~~~~~v~VI~tTn~~~~ 313 (419)
-.++.||-.+|++..
T Consensus 562 -----lp~~tvISV~Hr~tl 576 (604)
T COG4178 562 -----LPDATVISVGHRPTL 576 (604)
T ss_pred -----CCCCEEEEeccchhh
Confidence 246889999998763
No 480
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=5.2e-06 Score=79.45 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=39.3
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.++++|| +.++.|+.....+.+++..+. . +..||++||+++.+..
T Consensus 163 ~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tiiiisH~~~~~~~ 211 (251)
T PRK14251 163 AVRPKVVLLDE-----------PTSALDPISSSEIEETLMELK----H-QYTFIMVTHNLQQAGR 211 (251)
T ss_pred hcCCCEEEecC-----------CCccCCHHHHHHHHHHHHHHH----c-CCeEEEEECCHHHHHh
Confidence 35799999999 667789999999999998763 2 3679999999876544
No 481
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.32 E-value=4.4e-06 Score=89.79 Aligned_cols=118 Identities=20% Similarity=0.287 Sum_probs=76.5
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.++++..+.+.||+|+|||||++.+++.. ..+-+.+++.++.
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~ 435 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG 435 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC
Confidence 456788999999999999999999999754 2233333321110
Q ss_pred -------------------hh-------hhch----hHHHHHH--HHHHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 233 -------------------QK-------YIGE----GSRMVRE--LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 233 -------------------~~-------~~g~----~~~~i~~--lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.. .+|+ ..++-++ .+.+|.-..|.|+++|| ++++.|.
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDE-----------pts~LD~ 504 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDE-----------ATSALDV 504 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CccCCCH
Confidence 00 0111 1112222 33334457899999999 6677899
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEc
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEF 330 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~ 330 (419)
...+.+.+.|..+. .+.+||++||+++.+. .+|+++.+
T Consensus 505 ~~~~~i~~~l~~~~-----~~~tvI~isH~~~~~~-------~~d~i~~l 542 (585)
T TIGR01192 505 ETEARVKNAIDALR-----KNRTTFIIAHRLSTVR-------NADLVLFL 542 (585)
T ss_pred HHHHHHHHHHHHHh-----CCCEEEEEEcChHHHH-------cCCEEEEE
Confidence 99888888887652 2567899999986553 35665555
No 482
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=3.2e-06 Score=89.28 Aligned_cols=52 Identities=12% Similarity=0.330 Sum_probs=41.2
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
|....|.|+++|| |+++.|+.....+.++|.++. ..+..||++||+.+.+..
T Consensus 157 al~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~l~----~~~~tvi~~tH~~~~~~~ 208 (506)
T PRK13549 157 ALNKQARLLILDE-----------PTASLTESETAVLLDIIRDLK----AHGIACIYISHKLNEVKA 208 (506)
T ss_pred HHhcCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCcHHHHHH
Confidence 3346799999999 777899999999999998873 235678999999876653
No 483
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.32 E-value=5e-06 Score=79.99 Aligned_cols=51 Identities=29% Similarity=0.466 Sum_probs=40.4
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| |+++.|......+.+++..+. ...+..||++||+.+.+..
T Consensus 167 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 167 VTHPRLVFMDE-----------PTGGLDVSVQARLLDLLRGLV---RELGLAVVIVTHDLAVARL 217 (258)
T ss_pred hcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---HhcCcEEEEEeCCHHHHHH
Confidence 35799999999 677889998888888887762 2236789999999887754
No 484
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.32 E-value=4.2e-06 Score=88.01 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=41.2
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.||++|| |+++.|......+.+++..+. ..+..||++||..+.+.
T Consensus 405 al~~~p~illLDE-----------Pt~gLD~~~~~~~~~~l~~l~----~~~~tvi~vsHd~~~~~ 455 (491)
T PRK10982 405 WLLTQPEILMLDE-----------PTRGIDVGAKFEIYQLIAELA----KKDKGIIIISSEMPELL 455 (491)
T ss_pred HHhcCCCEEEEcC-----------CCcccChhHHHHHHHHHHHHH----HCCCEEEEECCChHHHH
Confidence 3446799999999 788899999999999998773 23577999999988764
No 485
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=5.4e-06 Score=79.76 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=38.7
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
..|.|+++|| |+++.|......+.+++.++. . +..||++||+.+.+..
T Consensus 172 ~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tiiivtH~~~~~~~ 219 (259)
T PRK14274 172 TNPDVLLMDE-----------PTSALDPVSTRKIEELILKLK----E-KYTIVIVTHNMQQAAR 219 (259)
T ss_pred cCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHh----c-CCEEEEEEcCHHHHHH
Confidence 5699999999 677889999999999998873 2 3678999998876654
No 486
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.32 E-value=5.3e-06 Score=77.83 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=37.1
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
...|.++++|| +..+.|...+..+..+|..+. ...+..||++||+.+
T Consensus 157 ~~~p~illlDE-----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 157 VHRPKLVLADE-----------PTAALDSKSGRDVVELMQKLA---REQGCTILIVTHDNR 203 (220)
T ss_pred hcCCCEEEEeC-----------CCCcCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHH
Confidence 35799999999 667789988888888887763 223678899999875
No 487
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.32 E-value=3.6e-06 Score=83.43 Aligned_cols=120 Identities=19% Similarity=0.289 Sum_probs=73.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhc---cCCceEEEeCcchhhh----------------hhchhHHHHHHHHHHHH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSELVQK----------------YIGEGSRMVRELFVMAR 251 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~---~~~~~i~v~~s~l~~~----------------~~g~~~~~i~~lf~~a~ 251 (419)
|++.++-+.++||||||||+|+-.++.+ .+...+.++..+-... .+...+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 5777888999999999999999988753 3566677765331110 11122233333334456
Q ss_pred hhCCceEEeccccccccc-ccCCCCCCCCHHH-HHHHHHHHHHccccccCCCeEEEEEeCC
Q 014743 252 EHAPSIIFMDEIDSIGSA-RMESGSGNGDSEV-QRTMLELLNQLDGFEASNKIKVLMATNR 310 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~-r~~~~~~~~~~~~-~~~l~~lL~~l~~~~~~~~v~VI~tTn~ 310 (419)
...+++|++|-+-++.+. ..+...+..+... .+.+.+.|..+.......++.+|+|...
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQv 191 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQL 191 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 678999999999998863 2111111111111 2445566666655556678888887653
No 488
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.32 E-value=4e-06 Score=84.94 Aligned_cols=115 Identities=23% Similarity=0.377 Sum_probs=72.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh------hhch--------hHHHHHHHHHHHHhh
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK------YIGE--------GSRMVRELFVMAREH 253 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~------~~g~--------~~~~i~~lf~~a~~~ 253 (419)
|+.++.-++|+||||+|||+|+..+|... +..++++++.+-... .+|. .+..+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 67888889999999999999999998754 346777766542221 1111 122356677777788
Q ss_pred CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC
Q 014743 254 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 310 (419)
Q Consensus 254 ~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~ 310 (419)
.|.+|+||+|..+.....++ ..+...++...+.+|.+.. ...++.+|++.+.
T Consensus 158 ~~~lVVIDSIq~l~~~~~~~-~~g~~~qvr~~~~~L~~la----k~~~itvilvghv 209 (372)
T cd01121 158 KPDLVIIDSIQTVYSSELTS-APGSVSQVRECTAELMRFA----KERNIPIFIVGHV 209 (372)
T ss_pred CCcEEEEcchHHhhcccccc-CCCCHHHHHHHHHHHHHHH----HHcCCeEEEEeec
Confidence 99999999999886543221 1112233333343443332 3456777777653
No 489
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.32 E-value=5.2e-06 Score=79.85 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=38.5
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
..|.|+++|| ++++.|......+.++|.++. . +..||++||..+.+..
T Consensus 165 ~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tviivsH~~~~~~~ 212 (258)
T PRK14241 165 VEPDVLLMDE-----------PCSALDPISTLAIEDLINELK----Q-DYTIVIVTHNMQQAAR 212 (258)
T ss_pred cCCCEEEEcC-----------CCccCCHHHHHHHHHHHHHHh----c-CCEEEEEecCHHHHHH
Confidence 5699999999 677889999999999998873 2 2578899998876644
No 490
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=5.7e-06 Score=79.91 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=39.6
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| |+++.|......+.+++.++. . +..||++||.++.+..
T Consensus 165 ~~~p~llllDE-----------PtsgLD~~~~~~l~~~l~~~~----~-~~tii~isH~~~~i~~ 213 (261)
T PRK14263 165 ATEPEVLLLDE-----------PCSALDPIATRRVEELMVELK----K-DYTIALVTHNMQQAIR 213 (261)
T ss_pred HcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEeCCHHHHHH
Confidence 35799999999 777899999999999998873 2 3678899999887653
No 491
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=5.5e-06 Score=79.19 Aligned_cols=49 Identities=18% Similarity=0.355 Sum_probs=38.7
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| ++++.|......+.++|..+. . +..||++||+.+.+..
T Consensus 162 ~~~p~llllDE-----------P~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sH~~~~~~~ 210 (250)
T PRK14240 162 AVEPEVLLMDE-----------PTSALDPISTLKIEELIQELK----K-DYTIVIVTHNMQQASR 210 (250)
T ss_pred hcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHh----c-CCeEEEEEeCHHHHHh
Confidence 35799999999 667789999999999998773 2 3578899998876544
No 492
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.31 E-value=3e-06 Score=100.99 Aligned_cols=111 Identities=17% Similarity=0.253 Sum_probs=75.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh--------------------------------hhh
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------------------------------QKY 235 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~--------------------------------~~~ 235 (419)
+++.++..+.|.||+|+|||||.|.|++.. ..+-+.+++.++. ...
T Consensus 1960 f~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l 2039 (2272)
T TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL 2039 (2272)
T ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHh
Confidence 456778889999999999999999999854 3333444332210 000
Q ss_pred hchh----------------------------HHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 236 IGEG----------------------------SRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 236 ~g~~----------------------------~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
.|.. .++. +-.+..|....|.|||+|| |+++.|+..++.
T Consensus 2040 ~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDE-----------PTsGLDp~sr~~ 2108 (2272)
T TIGR01257 2040 RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE-----------PTTGMDPQARRM 2108 (2272)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCCCCCHHHHHH
Confidence 0100 0011 1123334456799999999 788899999999
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+++++.++. ..+..||+|||..+.+.
T Consensus 2109 l~~lL~~l~----~~g~TIILtTH~mee~e 2134 (2272)
T TIGR01257 2109 LWNTIVSII----REGRAVVLTSHSMEECE 2134 (2272)
T ss_pred HHHHHHHHH----hCCCEEEEEeCCHHHHH
Confidence 999998873 23577999999988664
No 493
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=5.8e-06 Score=80.06 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=38.9
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.++++|| ++++.|......+.++|..+. . +..||++||+++.+..
T Consensus 179 ~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~l~~~~----~-~~tiii~tH~~~~~~~ 227 (267)
T PRK14237 179 AVKPDILLMDE-----------PASALDPISTMQLEETMFELK----K-NYTIIIVTHNMQQAAR 227 (267)
T ss_pred hcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHh----c-CCEEEEEecCHHHHHH
Confidence 35799999999 667789988889999998773 2 3678999998876644
No 494
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.31 E-value=1.4e-06 Score=81.94 Aligned_cols=111 Identities=20% Similarity=0.279 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc----------hhhhhhchhHHHHHHHHHHHH--hhCCceEEecc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE----------LVQKYIGEGSRMVRELFVMAR--EHAPSIIFMDE 262 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~----------l~~~~~g~~~~~i~~lf~~a~--~~~psVl~iDE 262 (419)
|..+||||+||+|||++|+.++.. ..++..+++. +...-.......+.+.+..+. ...+..|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 667999999999999999999742 2233333321 000000111112223333222 35588999999
Q ss_pred cccccc------cccCCC---CCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 263 IDSIGS------ARMESG---SGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 263 iD~l~~------~r~~~~---~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
|+.+.. .|.... ...+=..+...+..+|..+. . .+.-||++.+..
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~---~-~g~nII~tAhe~ 143 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLK---E-SNKNIYATAWEL 143 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHH---h-CCCcEEEEEeec
Confidence 998754 221111 11111334455566666553 2 344466666653
No 495
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=5.5e-06 Score=80.40 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=39.0
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| ++.+.|......+.+++.++. . +..||++||.++.+..
T Consensus 184 ~~~p~lllLDE-----------Pt~gLD~~~~~~l~~~L~~~~----~-~~tiiivtH~~~~~~~ 232 (272)
T PRK14236 184 AIEPEVLLLDE-----------PTSALDPISTLKIEELITELK----S-KYTIVIVTHNMQQAAR 232 (272)
T ss_pred HCCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH----h-CCeEEEEeCCHHHHHh
Confidence 35799999999 677789999999999998873 2 3578889999877654
No 496
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.30 E-value=3.6e-06 Score=78.74 Aligned_cols=141 Identities=17% Similarity=0.217 Sum_probs=78.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh----hhhc-------------------hhHHHHH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ----KYIG-------------------EGSRMVR 244 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~----~~~g-------------------~~~~~i~ 244 (419)
|+.++.-++++||||||||+++..+|.+. +...+.++...... ...+ +....+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 67888889999999999999999998654 45566665532111 0000 0111222
Q ss_pred HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh-----HHhc
Q 014743 245 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD-----QALL 319 (419)
Q Consensus 245 ~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld-----~all 319 (419)
.+...+. ..+++|+||-+-.+.....+. ........+.+.+++..+..+....++.||+|+....... |..-
T Consensus 95 ~~~~~~~-~~~~lvvIDsi~~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g 171 (218)
T cd01394 95 ETETFAD-EKVDLVVVDSATALYRLELGD--DDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGG 171 (218)
T ss_pred HHHHHHh-cCCcEEEEechHHhhhHHhcC--ccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCC
Confidence 3333232 348999999999885322111 1111223334455554444444566888888877543222 3210
Q ss_pred C--CCceeEEEEcCCCC
Q 014743 320 R--PGRIDRKIEFPNPN 334 (419)
Q Consensus 320 r--~gRfd~~I~~~~P~ 334 (419)
+ ....|.+|.+....
T Consensus 172 ~~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 172 HTLEHWSKVILRLEKLR 188 (218)
T ss_pred cchhcceeEEEEEEEcC
Confidence 0 11457777776554
No 497
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.30 E-value=6.5e-06 Score=77.06 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=36.6
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHH--HHHHccccccCCCeEEEEEeCCcchh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE--LLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~--lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
....|.||++|| ++.+.|......+.+ ++..+. ..+..+|++||..+.+
T Consensus 155 l~~~p~illlDE-----------Pt~~LD~~~~~~l~~~~ll~~~~----~~~~tii~~sH~~~~~ 205 (218)
T cd03290 155 LYQNTNIVFLDD-----------PFSALDIHLSDHLMQEGILKFLQ----DDKRTLVLVTHKLQYL 205 (218)
T ss_pred HhhCCCEEEEeC-----------CccccCHHHHHHHHHHHHHHHHh----cCCCEEEEEeCChHHH
Confidence 345799999999 666788887777776 666552 2357899999998765
No 498
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=6.3e-06 Score=79.32 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=39.5
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.|+++|| ++++.|......+.+++.++. . +..||++||+++.+..
T Consensus 170 ~~~p~llllDE-----------Pt~~LD~~~~~~l~~~l~~l~----~-~~tiiivsH~~~~~~~ 218 (258)
T PRK14268 170 AVKPKIILFDE-----------PTSALDPISTARIEDLIMNLK----K-DYTIVIVTHNMQQAAR 218 (258)
T ss_pred HcCCCEEEEeC-----------CCcccCHHHHHHHHHHHHHHh----h-CCEEEEEECCHHHHHH
Confidence 35799999999 677889999999999998772 2 4778999999877643
No 499
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=2.4e-05 Score=76.50 Aligned_cols=144 Identities=15% Similarity=0.257 Sum_probs=93.1
Q ss_pred CcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEE--EeC--------------
Q 014743 165 GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR--VSG-------------- 228 (419)
Q Consensus 165 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~--v~~-------------- 228 (419)
++..+++.+..++... +.+..+||+|| +||+++|+.+|..+-|.--. -.|
T Consensus 6 ~q~~~~~~L~~~~~~~------------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~H 71 (290)
T PRK07276 6 KQPKVFQRFQTILEQD------------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEF 71 (290)
T ss_pred HHHHHHHHHHHHHHcC------------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4667788888887663 56788999996 68999999999754221000 000
Q ss_pred cchhhhhh-c--hhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCC
Q 014743 229 SELVQKYI-G--EGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK 301 (419)
Q Consensus 229 s~l~~~~~-g--~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 301 (419)
+++.--.. | -.-..+|++...+.. ....|++||++|.+ .....+.|+..|.+ +..+
T Consensus 72 PD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m------------~~~AaNaLLKtLEE-----Pp~~ 134 (290)
T PRK07276 72 SDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM------------HVNAANSLLKVIEE-----PQSE 134 (290)
T ss_pred CCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc------------CHHHHHHHHHHhcC-----CCCC
Confidence 11110000 1 112345666555443 33579999999994 45566767766654 4567
Q ss_pred eEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHH
Q 014743 302 IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK 343 (419)
Q Consensus 302 v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~ 343 (419)
+++|++|+.++.+.|.+++ |+ ..|.|++ +.+...+++.
T Consensus 135 t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 135 IYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred eEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 9999999999999999988 76 4678876 5555555554
No 500
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.30 E-value=6.7e-06 Score=79.45 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=39.0
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
...|.||++|| ++++.|......+.++|..+. .+ ..||++||+++.+..
T Consensus 167 ~~~p~lllLDE-----------Pt~~LD~~~~~~l~~~L~~~~----~~-~tvi~vtH~~~~~~~ 215 (264)
T PRK14243 167 AVQPEVILMDE-----------PCSALDPISTLRIEELMHELK----EQ-YTIIIVTHNMQQAAR 215 (264)
T ss_pred hcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHh----cC-CEEEEEecCHHHHHH
Confidence 35799999999 667789999999999998873 22 578899998877654
Done!