Query 014743
Match_columns 419
No_of_seqs 423 out of 4126
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 17:02:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 7.3E-76 2.5E-80 591.4 34.1 390 29-419 16-405 (405)
2 4b4t_I 26S protease regulatory 100.0 1.3E-70 4.3E-75 554.9 31.4 380 28-412 53-432 (437)
3 4b4t_K 26S protease regulatory 100.0 2.2E-68 7.5E-73 543.4 35.2 371 36-407 47-418 (428)
4 4b4t_L 26S protease subunit RP 100.0 1.8E-68 6.1E-73 544.9 33.2 359 48-407 68-426 (437)
5 4b4t_M 26S protease regulatory 100.0 2.9E-68 1E-72 542.9 29.8 371 38-409 32-428 (434)
6 4b4t_H 26S protease regulatory 100.0 1.9E-66 6.3E-71 529.1 29.3 315 93-408 141-455 (467)
7 3cf2_A TER ATPase, transitiona 100.0 2.4E-51 8.3E-56 445.0 9.9 266 152-418 468-758 (806)
8 3cf2_A TER ATPase, transitiona 100.0 7.2E-48 2.4E-52 417.9 18.0 252 152-407 195-463 (806)
9 2x8a_A Nuclear valosin-contain 100.0 4.3E-44 1.5E-48 346.3 21.0 253 154-410 3-271 (274)
10 3cf0_A Transitional endoplasmi 100.0 1.2E-43 4.2E-48 347.1 21.5 266 152-418 6-296 (301)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 6.1E-42 2.1E-46 338.5 23.7 259 153-418 4-314 (322)
12 3h4m_A Proteasome-activating n 100.0 7.7E-41 2.6E-45 322.9 28.7 257 150-407 6-262 (285)
13 2ce7_A Cell division protein F 100.0 8E-41 2.7E-45 345.4 27.5 250 155-406 10-259 (476)
14 3eie_A Vacuolar protein sortin 100.0 3.4E-41 1.2E-45 332.7 20.4 261 151-418 8-313 (322)
15 1lv7_A FTSH; alpha/beta domain 100.0 7.8E-40 2.7E-44 312.0 26.5 253 151-405 2-254 (257)
16 2qp9_X Vacuolar protein sortin 100.0 1.6E-40 5.4E-45 332.5 22.4 261 151-418 41-346 (355)
17 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.6E-39 5.6E-44 309.1 20.6 254 156-410 1-256 (262)
18 2zan_A Vacuolar protein sortin 100.0 2.5E-39 8.5E-44 333.0 20.4 261 151-418 124-436 (444)
19 3hu3_A Transitional endoplasmi 100.0 2.3E-38 7.8E-43 329.0 25.9 250 155-408 198-464 (489)
20 2dhr_A FTSH; AAA+ protein, hex 100.0 2.2E-38 7.6E-43 328.9 22.3 249 156-406 26-274 (499)
21 1ixz_A ATP-dependent metallopr 100.0 4.3E-37 1.5E-41 292.5 25.9 246 153-400 8-253 (254)
22 3d8b_A Fidgetin-like protein 1 100.0 2.2E-36 7.5E-41 302.6 25.2 261 151-418 74-349 (357)
23 3b9p_A CG5977-PA, isoform A; A 100.0 1.1E-36 3.6E-41 295.9 22.0 265 150-418 10-287 (297)
24 1iy2_A ATP-dependent metallopr 100.0 1.6E-35 5.4E-40 285.9 26.7 245 154-400 33-277 (278)
25 1ypw_A Transitional endoplasmi 100.0 1.6E-39 5.6E-44 356.3 -3.7 267 151-418 467-758 (806)
26 2r62_A Cell division protease 100.0 3.1E-39 1.1E-43 309.2 -1.8 254 154-408 4-258 (268)
27 3vfd_A Spastin; ATPase, microt 100.0 2.9E-35 1E-39 297.5 22.5 266 146-418 100-380 (389)
28 1ypw_A Transitional endoplasmi 100.0 4.6E-32 1.6E-36 297.3 23.0 249 154-406 197-462 (806)
29 3t15_A Ribulose bisphosphate c 100.0 5.1E-29 1.8E-33 242.7 15.1 178 191-374 32-222 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 4.5E-29 1.5E-33 257.4 -6.1 206 155-378 31-262 (456)
31 3syl_A Protein CBBX; photosynt 99.9 7.6E-24 2.6E-28 206.0 20.6 223 161-397 31-280 (309)
32 3uk6_A RUVB-like 2; hexameric 99.9 1.9E-22 6.4E-27 200.9 18.7 222 156-405 39-332 (368)
33 3pfi_A Holliday junction ATP-d 99.9 2.1E-21 7.2E-26 191.4 24.2 223 151-404 19-255 (338)
34 1ofh_A ATP-dependent HSL prote 99.9 1.5E-22 5.2E-27 196.1 13.6 242 161-404 15-300 (310)
35 3pxi_A Negative regulator of g 99.9 1.4E-21 4.7E-26 213.3 19.0 198 161-384 491-725 (758)
36 3m6a_A ATP-dependent protease 99.9 1.4E-22 4.9E-27 213.1 8.5 225 159-402 79-340 (543)
37 1g41_A Heat shock protein HSLU 99.9 7.1E-23 2.4E-27 209.0 5.9 170 161-343 15-189 (444)
38 1hqc_A RUVB; extended AAA-ATPa 99.9 1.4E-20 4.9E-25 183.8 19.2 219 153-403 4-238 (324)
39 1d2n_A N-ethylmaleimide-sensit 99.9 7.1E-21 2.4E-25 182.4 15.5 223 161-402 33-263 (272)
40 1qvr_A CLPB protein; coiled co 99.8 3.7E-21 1.3E-25 212.5 14.4 202 160-385 557-821 (854)
41 2chg_A Replication factor C sm 99.8 1.3E-19 4.5E-24 165.4 22.3 206 151-401 7-224 (226)
42 3hws_A ATP-dependent CLP prote 99.8 1.8E-20 6.3E-25 187.1 16.1 236 161-399 15-345 (363)
43 2v1u_A Cell division control p 99.8 8.7E-20 3E-24 181.5 20.8 223 161-406 19-279 (387)
44 1r6b_X CLPA protein; AAA+, N-t 99.8 4.1E-20 1.4E-24 201.6 18.8 200 161-384 458-716 (758)
45 4fcw_A Chaperone protein CLPB; 99.8 9.3E-20 3.2E-24 177.1 16.8 202 161-384 17-279 (311)
46 3u61_B DNA polymerase accessor 99.8 1.1E-19 3.7E-24 178.2 16.1 207 150-401 15-235 (324)
47 1njg_A DNA polymerase III subu 99.8 7.2E-19 2.5E-23 162.2 20.4 207 151-400 13-248 (250)
48 1g8p_A Magnesium-chelatase 38 99.8 9.6E-19 3.3E-23 172.5 20.4 224 154-407 17-326 (350)
49 2z4s_A Chromosomal replication 99.8 6.7E-19 2.3E-23 180.6 19.9 219 156-405 100-334 (440)
50 3pvs_A Replication-associated 99.8 2.3E-19 8E-24 184.3 16.5 209 152-403 17-244 (447)
51 1sxj_D Activator 1 41 kDa subu 99.8 9.8E-19 3.3E-23 172.5 20.0 213 149-401 25-261 (353)
52 1jbk_A CLPB protein; beta barr 99.8 1.1E-19 3.8E-24 162.0 11.8 162 154-342 15-194 (195)
53 1l8q_A Chromosomal replication 99.8 1.7E-18 5.9E-23 169.9 19.7 220 156-405 6-242 (324)
54 1r6b_X CLPA protein; AAA+, N-t 99.8 4.5E-19 1.5E-23 193.3 17.0 225 154-404 179-434 (758)
55 2qby_B CDC6 homolog 3, cell di 99.8 8.4E-19 2.9E-23 175.0 17.4 214 161-405 20-272 (384)
56 2r44_A Uncharacterized protein 99.8 8.4E-19 2.9E-23 172.5 17.2 220 157-407 23-301 (331)
57 1sxj_A Activator 1 95 kDa subu 99.8 3.3E-19 1.1E-23 186.4 14.5 229 148-403 26-274 (516)
58 2qby_A CDC6 homolog 1, cell di 99.8 6.7E-18 2.3E-22 167.6 22.4 222 160-405 19-274 (386)
59 1um8_A ATP-dependent CLP prote 99.8 2E-18 6.8E-23 173.1 17.8 241 161-403 21-365 (376)
60 3bos_A Putative DNA replicatio 99.8 7.1E-18 2.4E-22 156.6 20.1 206 156-401 23-241 (242)
61 3pxg_A Negative regulator of g 99.8 1E-18 3.6E-23 180.5 15.4 210 153-404 172-407 (468)
62 1in4_A RUVB, holliday junction 99.8 3.6E-17 1.2E-21 161.7 25.1 222 152-404 16-251 (334)
63 1fnn_A CDC6P, cell division co 99.8 9.6E-18 3.3E-22 167.2 20.9 220 161-405 17-276 (389)
64 1iqp_A RFCS; clamp loader, ext 99.8 3.1E-17 1.1E-21 159.6 22.0 192 149-380 13-216 (327)
65 3te6_A Regulatory protein SIR3 99.8 1.2E-18 4.1E-23 171.0 11.1 214 163-404 22-316 (318)
66 1sxj_B Activator 1 37 kDa subu 99.8 3.7E-17 1.3E-21 158.8 20.7 207 150-401 10-229 (323)
67 2p65_A Hypothetical protein PF 99.8 4.2E-18 1.4E-22 151.7 12.5 155 154-334 15-187 (187)
68 3pxi_A Negative regulator of g 99.8 4.9E-18 1.7E-22 185.3 15.2 208 153-402 172-405 (758)
69 1qvr_A CLPB protein; coiled co 99.8 6.5E-18 2.2E-22 186.6 15.7 204 154-384 163-393 (854)
70 2chq_A Replication factor C sm 99.7 1.5E-17 5E-22 161.4 15.7 209 150-399 6-222 (319)
71 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 5.8E-18 2E-22 175.8 11.6 212 161-404 22-286 (500)
72 1sxj_E Activator 1 40 kDa subu 99.7 4.6E-17 1.6E-21 161.0 17.5 196 150-383 3-244 (354)
73 1jr3_A DNA polymerase III subu 99.7 7.3E-17 2.5E-21 160.2 18.8 206 151-399 6-240 (373)
74 2bjv_A PSP operon transcriptio 99.7 2.4E-16 8.1E-21 150.1 15.4 208 158-396 3-250 (265)
75 1sxj_C Activator 1 40 kDa subu 99.7 1.2E-15 4.3E-20 150.6 18.1 210 149-399 13-235 (340)
76 3f9v_A Minichromosome maintena 99.7 5.7E-17 1.9E-21 172.1 7.3 225 161-406 295-590 (595)
77 1ojl_A Transcriptional regulat 99.6 2.2E-15 7.5E-20 147.1 11.6 195 161-383 2-235 (304)
78 1w5s_A Origin recognition comp 99.6 7.5E-14 2.6E-18 140.1 23.0 225 161-404 22-294 (412)
79 3k1j_A LON protease, ATP-depen 99.6 1.1E-14 3.7E-19 155.0 17.0 221 153-402 33-374 (604)
80 3cmw_A Protein RECA, recombina 99.6 8E-16 2.7E-20 177.4 7.3 156 155-311 1014-1218(1706)
81 3kw6_A 26S protease regulatory 99.6 6E-15 2.1E-19 114.9 9.4 77 331-407 1-77 (78)
82 3co5_A Putative two-component 99.6 3.2E-15 1.1E-19 129.6 8.6 132 162-333 5-142 (143)
83 2krk_A 26S protease regulatory 99.6 7.8E-15 2.7E-19 116.5 8.5 77 330-406 8-84 (86)
84 3n70_A Transport activator; si 99.5 1.2E-14 4.3E-19 126.1 9.8 132 162-333 2-144 (145)
85 1a5t_A Delta prime, HOLB; zinc 99.5 3.5E-13 1.2E-17 133.0 16.7 172 166-377 7-206 (334)
86 3vlf_B 26S protease regulatory 99.5 7.4E-14 2.5E-18 111.3 8.8 85 334-418 2-87 (88)
87 2gno_A DNA polymerase III, gam 99.4 6.1E-13 2.1E-17 129.9 13.6 142 165-346 1-152 (305)
88 3aji_B S6C, proteasome (prosom 99.4 1.5E-13 5.3E-18 108.1 7.2 75 334-408 2-76 (83)
89 3ec2_A DNA replication protein 99.4 4.3E-13 1.5E-17 120.0 10.7 133 154-312 3-144 (180)
90 4akg_A Glutathione S-transfera 99.3 1.5E-11 5.1E-16 147.6 16.5 141 193-348 1265-1433(2695)
91 2dzn_B 26S protease regulatory 99.3 4.9E-13 1.7E-17 105.1 2.4 70 336-405 1-70 (82)
92 2wg5_A General control protein 99.2 3.5E-12 1.2E-16 105.4 3.4 100 54-153 9-108 (109)
93 2fna_A Conserved hypothetical 99.2 2.2E-09 7.4E-14 104.8 21.4 187 158-377 10-251 (357)
94 1ny5_A Transcriptional regulat 99.2 3E-10 1E-14 114.3 14.6 210 160-400 136-384 (387)
95 2qen_A Walker-type ATPase; unk 99.1 4.9E-09 1.7E-13 102.1 21.7 190 159-377 10-247 (350)
96 2kjq_A DNAA-related protein; s 99.1 7.5E-11 2.5E-15 103.0 6.7 105 194-330 35-145 (149)
97 2w58_A DNAI, primosome compone 99.1 9.3E-11 3.2E-15 106.5 7.6 99 157-266 21-127 (202)
98 2vhj_A Ntpase P4, P4; non- hyd 99.1 4.1E-11 1.4E-15 117.0 3.3 115 191-310 119-235 (331)
99 3f8t_A Predicted ATPase involv 99.0 2E-09 6.8E-14 109.8 14.1 216 163-407 215-487 (506)
100 3dzd_A Transcriptional regulat 99.0 1.5E-09 5.2E-14 108.4 11.4 195 161-383 129-361 (368)
101 2qgz_A Helicase loader, putati 98.9 6.7E-10 2.3E-14 108.4 5.3 98 157-266 120-226 (308)
102 4akg_A Glutathione S-transfera 98.9 6.8E-08 2.3E-12 116.4 22.2 166 195-383 645-840 (2695)
103 1svm_A Large T antigen; AAA+ f 98.9 1.1E-09 3.7E-14 109.8 4.9 120 190-332 164-284 (377)
104 1ye8_A Protein THEP1, hypothet 98.9 1.3E-08 4.5E-13 91.3 11.5 122 197-337 2-167 (178)
105 3rlf_A Maltose/maltodextrin im 98.9 6.9E-09 2.4E-13 103.9 10.2 121 190-324 24-212 (381)
106 4g1u_C Hemin import ATP-bindin 98.8 1.1E-08 3.6E-13 97.9 10.6 114 189-316 31-213 (266)
107 2r2a_A Uncharacterized protein 98.8 9.2E-09 3.2E-13 94.1 8.9 127 195-335 5-155 (199)
108 3gfo_A Cobalt import ATP-bindi 98.8 1.6E-08 5.5E-13 97.0 10.4 113 189-315 28-208 (275)
109 1vpl_A ABC transporter, ATP-bi 98.8 2.3E-08 8E-13 94.9 11.2 112 189-315 35-210 (256)
110 3tui_C Methionine import ATP-b 98.8 2.1E-08 7.1E-13 99.8 10.8 114 189-316 48-229 (366)
111 3cmu_A Protein RECA, recombina 98.8 2.5E-08 8.4E-13 116.8 12.6 124 183-307 1412-1560(2050)
112 3fvq_A Fe(3+) IONS import ATP- 98.8 2.5E-08 8.4E-13 99.2 10.8 113 189-315 24-203 (359)
113 2yyz_A Sugar ABC transporter, 98.7 2.9E-08 1E-12 98.7 10.4 112 190-315 24-198 (359)
114 3tif_A Uncharacterized ABC tra 98.7 3.1E-08 1.1E-12 92.8 10.0 51 248-312 157-207 (235)
115 2pcj_A ABC transporter, lipopr 98.7 2.5E-08 8.6E-13 92.7 9.3 47 252-313 156-202 (224)
116 3h43_A Proteasome-activating n 98.7 3.1E-09 1.1E-13 83.6 2.4 76 66-141 2-77 (85)
117 1z47_A CYSA, putative ABC-tran 98.7 2.8E-08 9.5E-13 98.7 9.9 113 189-315 35-210 (355)
118 2olj_A Amino acid ABC transpor 98.7 5E-08 1.7E-12 93.0 10.5 51 250-315 173-223 (263)
119 2onk_A Molybdate/tungstate ABC 98.7 3.3E-08 1.1E-12 93.0 9.0 111 190-315 20-191 (240)
120 3m9b_A Proteasome-associated A 98.7 9.2E-09 3.1E-13 95.4 5.0 105 38-144 54-158 (251)
121 3d31_A Sulfate/molybdate ABC t 98.7 4.5E-08 1.5E-12 97.0 10.2 121 190-324 21-206 (348)
122 2it1_A 362AA long hypothetical 98.7 3.2E-08 1.1E-12 98.6 8.9 112 190-315 24-198 (362)
123 1v43_A Sugar-binding transport 98.7 3.4E-08 1.2E-12 98.7 8.2 113 189-315 31-206 (372)
124 2qi9_C Vitamin B12 import ATP- 98.7 6.9E-08 2.4E-12 91.3 9.9 111 190-315 21-197 (249)
125 2d2e_A SUFC protein; ABC-ATPas 98.6 1.1E-07 3.8E-12 89.8 10.6 51 250-315 157-207 (250)
126 2yz2_A Putative ABC transporte 98.6 1.2E-07 4.1E-12 90.4 10.8 51 250-315 152-202 (266)
127 1b0u_A Histidine permease; ABC 98.6 1E-07 3.4E-12 90.8 10.1 51 250-315 167-217 (262)
128 2ff7_A Alpha-hemolysin translo 98.6 1.3E-07 4.4E-12 89.3 10.6 50 249-314 158-207 (247)
129 2ehv_A Hypothetical protein PH 98.6 8.2E-08 2.8E-12 89.2 9.1 114 191-314 26-185 (251)
130 1ji0_A ABC transporter; ATP bi 98.6 1.1E-07 3.9E-12 89.2 9.8 51 250-315 153-203 (240)
131 2w0m_A SSO2452; RECA, SSPF, un 98.6 2E-07 6.9E-12 85.3 11.1 109 191-311 19-168 (235)
132 3nh6_A ATP-binding cassette SU 98.6 1.1E-07 3.6E-12 92.7 9.6 111 189-315 74-253 (306)
133 1g29_1 MALK, maltose transport 98.6 9E-08 3.1E-12 95.7 9.1 53 249-315 152-204 (372)
134 2ixe_A Antigen peptide transpo 98.6 2.3E-07 7.9E-12 88.7 11.5 53 248-314 168-220 (271)
135 2nq2_C Hypothetical ABC transp 98.6 2E-07 6.9E-12 88.2 10.8 54 248-315 140-193 (253)
136 2cbz_A Multidrug resistance-as 98.6 2E-07 7E-12 87.3 9.9 113 189-314 25-192 (237)
137 1g6h_A High-affinity branched- 98.6 3E-07 1E-11 87.2 11.1 51 250-315 167-217 (257)
138 1oxx_K GLCV, glucose, ABC tran 98.6 7.6E-08 2.6E-12 95.5 7.1 53 249-315 153-205 (353)
139 1n0w_A DNA repair protein RAD5 98.5 2.9E-07 9.8E-12 85.2 10.5 121 191-314 20-177 (243)
140 1sgw_A Putative ABC transporte 98.5 1.1E-07 3.8E-12 87.8 7.5 110 190-314 30-196 (214)
141 3vkg_A Dynein heavy chain, cyt 98.5 2.6E-07 9E-12 112.1 12.5 139 194-347 1303-1470(3245)
142 2zu0_C Probable ATP-dependent 98.5 4.9E-07 1.7E-11 86.2 11.7 50 251-315 179-228 (267)
143 1tue_A Replication protein E1; 98.5 7.2E-08 2.5E-12 88.2 5.5 33 191-223 54-86 (212)
144 2ghi_A Transport protein; mult 98.5 6.4E-07 2.2E-11 85.1 11.7 110 189-314 40-217 (260)
145 2ihy_A ABC transporter, ATP-bi 98.5 2.4E-07 8.1E-12 89.0 8.7 50 250-314 175-226 (279)
146 3gd7_A Fusion complex of cysti 98.5 1.7E-07 5.7E-12 94.3 7.9 110 189-314 41-217 (390)
147 1mv5_A LMRA, multidrug resista 98.5 1.9E-07 6.5E-12 87.8 7.1 53 246-314 149-201 (243)
148 2pjz_A Hypothetical protein ST 98.5 1.2E-06 4E-11 83.5 12.3 106 190-314 26-188 (263)
149 4gp7_A Metallophosphoesterase; 98.4 4.9E-08 1.7E-12 86.6 2.3 26 190-215 4-29 (171)
150 4a74_A DNA repair and recombin 98.4 3.2E-07 1.1E-11 84.1 7.8 121 191-313 21-182 (231)
151 2cvh_A DNA repair and recombin 98.4 3.6E-07 1.2E-11 83.2 7.9 40 191-230 16-55 (220)
152 2pze_A Cystic fibrosis transme 98.4 4.8E-07 1.7E-11 84.3 8.7 110 189-314 28-193 (229)
153 3hr8_A Protein RECA; alpha and 98.4 9.7E-07 3.3E-11 87.6 10.4 120 191-310 57-197 (356)
154 3cmu_A Protein RECA, recombina 98.4 8.5E-07 2.9E-11 104.1 10.9 133 180-312 714-870 (2050)
155 3ozx_A RNAse L inhibitor; ATP 98.4 1E-06 3.6E-11 92.1 10.2 110 192-315 291-450 (538)
156 1jr3_D DNA polymerase III, del 98.4 7.3E-06 2.5E-10 80.3 15.8 176 193-403 16-209 (343)
157 4a82_A Cystic fibrosis transme 98.4 1.1E-06 3.7E-11 92.8 10.2 109 190-314 362-539 (578)
158 3qf4_B Uncharacterized ABC tra 98.4 1.3E-06 4.4E-11 92.7 10.7 111 189-315 375-554 (598)
159 1u0j_A DNA replication protein 98.3 8.6E-07 2.9E-11 84.3 8.4 27 194-220 103-129 (267)
160 2eyu_A Twitching motility prot 98.3 1.6E-06 5.4E-11 82.4 10.0 99 192-312 22-134 (261)
161 2zr9_A Protein RECA, recombina 98.3 7.8E-07 2.7E-11 88.2 8.0 121 191-312 57-199 (349)
162 3vkg_A Dynein heavy chain, cyt 98.3 3.2E-06 1.1E-10 102.9 14.3 125 196-342 605-749 (3245)
163 3b5x_A Lipid A export ATP-bind 98.3 2.3E-06 7.9E-11 90.3 11.7 109 190-314 364-542 (582)
164 3j16_B RLI1P; ribosome recycli 98.3 1.9E-06 6.4E-11 91.4 10.6 53 249-316 234-286 (608)
165 1xp8_A RECA protein, recombina 98.3 2.4E-06 8.4E-11 85.1 10.9 120 191-311 70-211 (366)
166 3qf4_A ABC transporter, ATP-bi 98.3 2.5E-06 8.4E-11 90.3 10.9 109 190-314 364-541 (587)
167 3b60_A Lipid A export ATP-bind 98.3 2.4E-06 8.2E-11 90.2 10.8 110 189-314 363-542 (582)
168 2c9o_A RUVB-like 1; hexameric 98.3 3.4E-06 1.2E-10 86.3 11.4 129 255-405 296-439 (456)
169 3jvv_A Twitching mobility prot 98.3 1.9E-06 6.3E-11 85.6 8.9 99 194-314 122-234 (356)
170 1yqt_A RNAse L inhibitor; ATP- 98.3 2.2E-06 7.5E-11 89.7 9.8 57 245-316 167-223 (538)
171 3lda_A DNA repair protein RAD5 98.3 2.1E-06 7.1E-11 86.6 9.1 119 191-311 174-328 (400)
172 1pzn_A RAD51, DNA repair and r 98.2 2E-06 7E-11 85.1 8.8 123 190-314 126-289 (349)
173 2bbs_A Cystic fibrosis transme 98.2 1.8E-06 6E-11 83.4 8.1 109 190-314 59-222 (290)
174 2z43_A DNA repair and recombin 98.2 2E-06 6.8E-11 84.1 8.5 121 191-313 103-260 (324)
175 1z6t_A APAF-1, apoptotic prote 98.2 3.6E-05 1.2E-09 80.8 18.4 168 161-368 124-321 (591)
176 3thx_B DNA mismatch repair pro 98.2 6.5E-06 2.2E-10 90.9 13.0 116 192-321 670-806 (918)
177 1u94_A RECA protein, recombina 98.2 2.8E-06 9.7E-11 84.3 9.1 121 191-311 59-200 (356)
178 3ozx_A RNAse L inhibitor; ATP 98.2 3.4E-06 1.1E-10 88.3 10.1 54 247-316 149-202 (538)
179 1v5w_A DMC1, meiotic recombina 98.2 4.2E-06 1.4E-10 82.6 9.7 121 191-313 118-276 (343)
180 2dr3_A UPF0273 protein PH0284; 98.2 8.7E-06 3E-10 75.1 11.2 110 191-312 19-174 (247)
181 3bk7_A ABC transporter ATP-bin 98.2 3.8E-06 1.3E-10 89.1 9.6 56 245-315 237-292 (607)
182 2yl4_A ATP-binding cassette SU 98.2 3.5E-06 1.2E-10 89.2 9.3 111 189-315 364-546 (595)
183 2pt7_A CAG-ALFA; ATPase, prote 98.2 1.4E-06 4.7E-11 85.7 5.7 100 192-313 168-277 (330)
184 1nlf_A Regulatory protein REPA 98.2 3.9E-06 1.3E-10 79.9 8.4 28 191-218 26-53 (279)
185 3bk7_A ABC transporter ATP-bin 98.1 5.1E-06 1.7E-10 88.1 9.5 111 192-316 379-537 (607)
186 4f4c_A Multidrug resistance pr 98.1 4.7E-06 1.6E-10 95.8 10.0 110 190-315 1100-1280(1321)
187 1tf7_A KAIC; homohexamer, hexa 98.1 1E-05 3.4E-10 84.4 11.2 114 191-314 35-188 (525)
188 3ux8_A Excinuclease ABC, A sub 98.1 4.9E-06 1.7E-10 89.3 8.9 65 235-314 540-609 (670)
189 3j16_B RLI1P; ribosome recycli 98.1 1.2E-05 4.3E-10 85.1 11.4 107 196-316 379-533 (608)
190 1yqt_A RNAse L inhibitor; ATP- 98.1 1.4E-05 4.6E-10 83.7 11.1 111 192-316 309-467 (538)
191 3sfz_A APAF-1, apoptotic pepti 98.1 6.6E-05 2.3E-09 84.8 17.1 167 161-368 124-321 (1249)
192 2iw3_A Elongation factor 3A; a 98.0 7.8E-06 2.7E-10 90.6 8.9 109 190-316 456-610 (986)
193 1cr0_A DNA primase/helicase; R 98.0 6.8E-06 2.3E-10 78.8 7.4 30 190-219 30-59 (296)
194 3thx_A DNA mismatch repair pro 98.0 2.8E-05 9.7E-10 86.0 13.1 108 193-314 660-788 (934)
195 3g5u_A MCG1178, multidrug resi 98.0 1.8E-05 6E-10 90.9 11.6 111 189-315 410-589 (1284)
196 3ux8_A Excinuclease ABC, A sub 98.0 1.2E-05 4E-10 86.3 9.5 64 236-314 200-267 (670)
197 1qhx_A CPT, protein (chloramph 98.0 1.1E-05 3.8E-10 70.9 7.8 37 195-231 3-39 (178)
198 3io5_A Recombination and repai 98.0 1.1E-05 3.8E-10 78.5 8.2 120 191-311 25-172 (333)
199 2i3b_A HCR-ntpase, human cance 98.0 9.7E-06 3.3E-10 73.2 7.4 24 196-219 2-25 (189)
200 4f4c_A Multidrug resistance pr 98.0 1.2E-05 4.1E-10 92.5 8.9 111 190-316 439-618 (1321)
201 2i1q_A DNA repair and recombin 98.0 9.8E-06 3.3E-10 78.9 6.9 118 191-310 94-258 (322)
202 3dm5_A SRP54, signal recogniti 97.9 0.00038 1.3E-08 70.8 18.5 195 194-405 99-342 (443)
203 3upu_A ATP-dependent DNA helic 97.9 1.5E-05 5E-10 81.7 8.1 59 147-219 10-69 (459)
204 2ewv_A Twitching motility prot 97.9 1.2E-05 4.2E-10 80.2 7.1 79 185-263 126-218 (372)
205 1zp6_A Hypothetical protein AT 97.9 8.2E-06 2.8E-10 72.6 4.9 41 191-231 5-45 (191)
206 3kl4_A SRP54, signal recogniti 97.9 0.00015 5E-09 73.7 14.3 195 194-405 96-342 (433)
207 3g5u_A MCG1178, multidrug resi 97.9 3.3E-05 1.1E-09 88.7 10.3 110 190-315 1054-1234(1284)
208 4aby_A DNA repair protein RECN 97.9 5.9E-05 2E-09 75.7 11.0 49 250-314 309-359 (415)
209 3vaa_A Shikimate kinase, SK; s 97.8 8.1E-06 2.8E-10 73.7 3.7 36 191-226 21-56 (199)
210 2r6a_A DNAB helicase, replicat 97.8 4.1E-05 1.4E-09 78.2 9.3 38 191-228 199-240 (454)
211 1g41_A Heat shock protein HSLU 97.8 0.00012 4.3E-09 74.4 12.6 157 241-404 239-434 (444)
212 2p5t_B PEZT; postsegregational 97.8 5.1E-05 1.7E-09 71.2 9.0 40 192-231 29-68 (253)
213 2zts_A Putative uncharacterize 97.8 6.7E-05 2.3E-09 69.1 9.6 111 191-311 26-182 (251)
214 2orw_A Thymidine kinase; TMTK, 97.8 1.8E-05 6E-10 71.1 5.4 114 195-332 3-138 (184)
215 2iut_A DNA translocase FTSK; n 97.8 0.00013 4.3E-09 76.4 12.6 74 256-343 345-420 (574)
216 1s96_A Guanylate kinase, GMP k 97.8 5.2E-05 1.8E-09 70.0 8.5 29 192-220 13-41 (219)
217 1gvn_B Zeta; postsegregational 97.8 5.7E-05 2E-09 72.5 8.8 39 193-231 31-69 (287)
218 2a5y_B CED-4; apoptosis; HET: 97.8 0.00027 9.4E-09 73.8 14.7 165 164-367 131-329 (549)
219 2iw3_A Elongation factor 3A; a 97.8 3.9E-05 1.3E-09 85.0 8.5 51 246-314 911-961 (986)
220 2o8b_B DNA mismatch repair pro 97.8 0.00014 4.7E-09 81.5 12.8 109 195-317 789-918 (1022)
221 2rhm_A Putative kinase; P-loop 97.7 1.5E-05 5.2E-10 70.8 3.6 35 191-225 1-35 (193)
222 3cmw_A Protein RECA, recombina 97.7 4.9E-05 1.7E-09 88.4 8.6 128 183-310 1416-1567(1706)
223 1tf7_A KAIC; homohexamer, hexa 97.7 7.3E-05 2.5E-09 77.8 9.1 110 191-311 277-417 (525)
224 1wb9_A DNA mismatch repair pro 97.7 0.00022 7.6E-09 77.8 13.1 109 194-315 606-734 (800)
225 3trf_A Shikimate kinase, SK; a 97.7 2E-05 6.7E-10 69.8 3.5 32 195-226 5-36 (185)
226 3bh0_A DNAB-like replicative h 97.7 0.00014 4.9E-09 70.6 9.9 37 191-227 64-103 (315)
227 2ius_A DNA translocase FTSK; n 97.7 0.0001 3.4E-09 76.4 9.2 74 257-344 300-375 (512)
228 1tev_A UMP-CMP kinase; ploop, 97.6 0.00024 8.1E-09 62.8 10.2 36 195-232 3-38 (196)
229 2b8t_A Thymidine kinase; deoxy 97.6 0.0002 6.8E-09 66.3 9.8 71 195-266 12-101 (223)
230 2q6t_A DNAB replication FORK h 97.6 0.00014 4.9E-09 74.0 9.6 38 191-228 196-237 (444)
231 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 0.00046 1.6E-08 65.0 12.2 39 194-232 3-44 (260)
232 1vma_A Cell division protein F 97.6 0.00063 2.1E-08 65.9 13.0 72 192-263 101-195 (306)
233 1y63_A LMAJ004144AAA protein; 97.5 3.7E-05 1.3E-09 68.4 3.4 33 193-225 8-41 (184)
234 1e69_A Chromosome segregation 97.5 0.00055 1.9E-08 66.5 12.0 57 242-314 223-285 (322)
235 3pih_A Uvrabc system protein A 97.5 0.00021 7.1E-09 78.9 9.6 69 241-331 808-881 (916)
236 3qkt_A DNA double-strand break 97.5 0.00043 1.5E-08 67.8 10.7 58 252-331 270-327 (339)
237 3iij_A Coilin-interacting nucl 97.5 4.6E-05 1.6E-09 67.2 3.4 34 193-226 9-42 (180)
238 2r8r_A Sensor protein; KDPD, P 97.5 0.00078 2.7E-08 62.4 11.8 33 196-228 7-42 (228)
239 1kag_A SKI, shikimate kinase I 97.5 6.3E-05 2.2E-09 65.6 4.2 36 195-232 4-39 (173)
240 1ewq_A DNA mismatch repair pro 97.5 0.00021 7.3E-09 77.5 9.0 23 195-217 576-598 (765)
241 3qf7_A RAD50; ABC-ATPase, ATPa 97.5 0.00025 8.5E-09 70.4 8.8 46 253-313 302-347 (365)
242 3kb2_A SPBC2 prophage-derived 97.5 5.8E-05 2E-09 65.5 3.6 31 197-227 3-33 (173)
243 2px0_A Flagellar biosynthesis 97.5 0.00035 1.2E-08 67.3 9.4 36 194-229 104-143 (296)
244 2iyv_A Shikimate kinase, SK; t 97.4 6.1E-05 2.1E-09 66.6 3.1 31 196-226 3-33 (184)
245 2cdn_A Adenylate kinase; phosp 97.4 7.6E-05 2.6E-09 67.1 3.8 34 193-226 18-51 (201)
246 1zd8_A GTP:AMP phosphotransfer 97.4 7.4E-05 2.5E-09 68.6 3.4 39 193-233 5-43 (227)
247 1via_A Shikimate kinase; struc 97.4 6.4E-05 2.2E-09 66.0 2.8 29 197-225 6-34 (175)
248 1aky_A Adenylate kinase; ATP:A 97.4 8E-05 2.7E-09 68.0 3.5 38 194-233 3-40 (220)
249 2c95_A Adenylate kinase 1; tra 97.4 8E-05 2.7E-09 66.2 3.4 39 193-233 7-45 (196)
250 4eun_A Thermoresistant glucoki 97.4 0.00013 4.5E-09 65.7 4.7 37 193-231 27-63 (200)
251 2ze6_A Isopentenyl transferase 97.4 9.6E-05 3.3E-09 69.5 3.7 33 197-229 3-35 (253)
252 3t61_A Gluconokinase; PSI-biol 97.3 0.00011 3.7E-09 66.1 3.7 31 195-225 18-48 (202)
253 1q57_A DNA primase/helicase; d 97.3 0.0005 1.7E-08 71.0 9.2 38 191-228 238-279 (503)
254 2r6f_A Excinuclease ABC subuni 97.3 0.00036 1.2E-08 77.0 8.4 55 255-331 867-921 (972)
255 3cm0_A Adenylate kinase; ATP-b 97.3 9.5E-05 3.2E-09 65.3 3.2 37 194-232 3-39 (186)
256 1zuh_A Shikimate kinase; alpha 97.3 0.0001 3.5E-09 64.2 3.4 31 196-226 8-38 (168)
257 3be4_A Adenylate kinase; malar 97.3 8.7E-05 3E-09 67.8 3.0 33 194-226 4-36 (217)
258 1kht_A Adenylate kinase; phosp 97.3 8.5E-05 2.9E-09 65.6 2.8 26 195-220 3-28 (192)
259 1ly1_A Polynucleotide kinase; 97.3 0.00011 3.6E-09 64.3 3.4 33 195-229 2-35 (181)
260 1qf9_A UMP/CMP kinase, protein 97.3 0.00011 3.6E-09 65.0 3.4 38 194-233 5-42 (194)
261 4a1f_A DNAB helicase, replicat 97.3 0.00039 1.3E-08 68.3 7.8 37 191-227 42-81 (338)
262 3lw7_A Adenylate kinase relate 97.3 9.3E-05 3.2E-09 63.9 2.9 29 197-226 3-31 (179)
263 2pez_A Bifunctional 3'-phospho 97.3 0.00014 4.8E-09 64.1 4.0 39 193-231 3-44 (179)
264 2gza_A Type IV secretion syste 97.3 0.00022 7.4E-09 70.7 5.9 74 190-263 170-261 (361)
265 3zvl_A Bifunctional polynucleo 97.3 0.0014 4.8E-08 66.1 11.9 37 193-231 256-292 (416)
266 2vf7_A UVRA2, excinuclease ABC 97.3 0.00022 7.6E-09 78.0 6.3 55 255-331 752-806 (842)
267 2oap_1 GSPE-2, type II secreti 97.3 0.00012 4.1E-09 76.0 4.0 71 193-263 258-342 (511)
268 2ygr_A Uvrabc system protein A 97.3 0.00059 2E-08 75.5 9.6 54 255-330 885-938 (993)
269 2bwj_A Adenylate kinase 5; pho 97.3 0.00011 3.7E-09 65.5 3.1 39 194-234 11-49 (199)
270 2vli_A Antibiotic resistance p 97.3 0.00011 3.8E-09 64.6 3.2 31 194-224 4-34 (183)
271 3uie_A Adenylyl-sulfate kinase 97.3 0.00016 5.5E-09 65.1 4.1 39 193-231 23-64 (200)
272 1knq_A Gluconate kinase; ALFA/ 97.3 0.00016 5.4E-09 63.3 4.0 36 194-231 7-42 (175)
273 3tlx_A Adenylate kinase 2; str 97.3 0.00013 4.3E-09 68.2 3.3 39 193-233 27-65 (243)
274 1vt4_I APAF-1 related killer D 97.3 0.0019 6.5E-08 71.9 12.9 43 163-217 130-172 (1221)
275 3szr_A Interferon-induced GTP- 97.2 0.00043 1.5E-08 73.4 7.7 22 198-219 48-69 (608)
276 1e6c_A Shikimate kinase; phosp 97.2 0.00012 4.1E-09 63.8 2.8 30 196-225 3-32 (173)
277 3dl0_A Adenylate kinase; phosp 97.2 0.00015 5.1E-09 65.8 3.6 30 197-226 2-31 (216)
278 1ukz_A Uridylate kinase; trans 97.2 0.00015 5E-09 65.2 3.5 38 194-233 14-51 (203)
279 1g5t_A COB(I)alamin adenosyltr 97.2 0.0012 4E-08 59.8 9.4 116 196-330 29-177 (196)
280 1ak2_A Adenylate kinase isoenz 97.2 0.00015 5.1E-09 67.0 3.6 38 194-233 15-52 (233)
281 3umf_A Adenylate kinase; rossm 97.2 0.00018 6E-09 66.4 4.0 41 192-234 26-66 (217)
282 2yhs_A FTSY, cell division pro 97.2 0.0017 6E-08 66.7 11.7 74 191-264 289-385 (503)
283 3bgw_A DNAB-like replicative h 97.2 0.00082 2.8E-08 68.5 9.2 38 191-228 193-233 (444)
284 2pt5_A Shikimate kinase, SK; a 97.2 0.00016 5.6E-09 62.6 3.4 29 197-225 2-30 (168)
285 3fb4_A Adenylate kinase; psych 97.2 0.00016 5.5E-09 65.5 3.3 30 197-226 2-31 (216)
286 1zak_A Adenylate kinase; ATP:A 97.2 9.8E-05 3.4E-09 67.5 1.9 37 194-232 4-40 (222)
287 1ls1_A Signal recognition part 97.2 0.0031 1E-07 60.6 12.5 90 194-293 97-209 (295)
288 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00012 4.1E-09 72.3 2.5 53 164-225 2-54 (359)
289 1m7g_A Adenylylsulfate kinase; 97.2 0.00064 2.2E-08 61.6 7.2 40 192-231 22-65 (211)
290 2v54_A DTMP kinase, thymidylat 97.2 0.00031 1.1E-08 62.8 5.0 34 194-227 3-37 (204)
291 2j41_A Guanylate kinase; GMP, 97.1 0.00026 8.9E-09 63.4 3.9 28 192-219 3-30 (207)
292 3c8u_A Fructokinase; YP_612366 97.1 0.00031 1.1E-08 63.6 4.2 28 193-220 20-47 (208)
293 1nks_A Adenylate kinase; therm 97.1 0.00024 8.2E-09 62.7 3.3 34 197-230 3-39 (194)
294 2bbw_A Adenylate kinase 4, AK4 97.1 0.00031 1.1E-08 65.3 4.2 31 194-224 26-56 (246)
295 3e1s_A Exodeoxyribonuclease V, 97.1 0.00035 1.2E-08 73.5 5.1 35 195-229 204-241 (574)
296 1cke_A CK, MSSA, protein (cyti 97.1 0.00034 1.2E-08 63.7 4.3 30 195-224 5-34 (227)
297 3tr0_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 63.0 3.8 35 192-228 4-38 (205)
298 3e70_C DPA, signal recognition 97.1 0.0019 6.6E-08 63.1 9.9 71 193-263 127-220 (328)
299 3crm_A TRNA delta(2)-isopenten 97.1 0.00029 9.9E-09 68.8 3.9 35 195-229 5-39 (323)
300 3sr0_A Adenylate kinase; phosp 97.1 0.00032 1.1E-08 64.0 3.9 35 197-233 2-36 (206)
301 1p9r_A General secretion pathw 97.1 0.0011 3.8E-08 67.0 8.2 70 194-263 166-245 (418)
302 1e4v_A Adenylate kinase; trans 97.0 0.00027 9.3E-09 64.2 3.2 30 197-226 2-31 (214)
303 1kgd_A CASK, peripheral plasma 97.0 0.00036 1.2E-08 61.7 3.9 27 194-220 4-30 (180)
304 1htw_A HI0065; nucleotide-bind 97.0 0.00036 1.2E-08 61.0 3.7 31 189-219 27-57 (158)
305 3nwj_A ATSK2; P loop, shikimat 97.0 0.00023 7.9E-09 67.0 2.7 32 195-226 48-79 (250)
306 4etp_A Kinesin-like protein KA 97.0 0.011 3.9E-07 59.2 15.0 59 165-252 121-179 (403)
307 2if2_A Dephospho-COA kinase; a 97.0 0.00033 1.1E-08 62.8 3.4 35 197-234 3-37 (204)
308 2wwf_A Thymidilate kinase, put 97.0 0.00022 7.4E-09 64.2 2.1 30 193-222 8-37 (212)
309 2pbr_A DTMP kinase, thymidylat 97.0 0.00052 1.8E-08 60.6 4.5 31 197-227 2-35 (195)
310 2xau_A PRE-mRNA-splicing facto 97.0 0.0017 5.9E-08 70.7 9.4 60 156-217 70-131 (773)
311 2jaq_A Deoxyguanosine kinase; 97.0 0.00042 1.4E-08 61.7 3.7 29 197-225 2-30 (205)
312 1jjv_A Dephospho-COA kinase; P 97.0 0.00052 1.8E-08 61.7 4.4 33 197-232 4-36 (206)
313 1z6g_A Guanylate kinase; struc 97.0 0.00038 1.3E-08 63.8 3.4 30 190-219 18-47 (218)
314 3tau_A Guanylate kinase, GMP k 97.0 0.00061 2.1E-08 61.8 4.7 28 193-220 6-33 (208)
315 2fz4_A DNA repair protein RAD2 96.9 0.0017 5.7E-08 60.3 7.7 37 196-232 109-146 (237)
316 2qor_A Guanylate kinase; phosp 96.9 0.00044 1.5E-08 62.4 3.6 29 192-220 9-37 (204)
317 2qt1_A Nicotinamide riboside k 96.9 0.0004 1.4E-08 62.6 3.3 32 193-224 19-51 (207)
318 1nn5_A Similar to deoxythymidy 96.9 0.00027 9.2E-09 63.7 2.0 28 193-220 7-34 (215)
319 3a8t_A Adenylate isopentenyltr 96.9 0.0005 1.7E-08 67.4 3.9 37 194-230 39-75 (339)
320 2plr_A DTMP kinase, probable t 96.9 0.00047 1.6E-08 61.8 3.4 27 195-221 4-30 (213)
321 1uf9_A TT1252 protein; P-loop, 96.9 0.00054 1.8E-08 61.1 3.7 38 194-234 7-44 (203)
322 1rz3_A Hypothetical protein rb 96.9 0.0017 5.9E-08 58.3 7.1 53 167-229 4-59 (201)
323 2gxq_A Heat resistant RNA depe 96.9 0.0053 1.8E-07 54.6 10.3 18 195-212 38-55 (207)
324 2bdt_A BH3686; alpha-beta prot 96.9 0.00052 1.8E-08 60.8 3.4 35 196-231 3-37 (189)
325 2yvu_A Probable adenylyl-sulfa 96.9 0.00085 2.9E-08 59.3 4.8 39 193-231 11-52 (186)
326 2z0h_A DTMP kinase, thymidylat 96.9 0.00067 2.3E-08 60.1 4.1 31 197-227 2-35 (197)
327 2xb4_A Adenylate kinase; ATP-b 96.9 0.00061 2.1E-08 62.5 3.9 34 197-232 2-35 (223)
328 1lvg_A Guanylate kinase, GMP k 96.9 0.00048 1.6E-08 62.1 3.2 27 193-219 2-28 (198)
329 3r20_A Cytidylate kinase; stru 96.9 0.00065 2.2E-08 63.2 4.1 36 194-231 8-43 (233)
330 3foz_A TRNA delta(2)-isopenten 96.8 0.00062 2.1E-08 66.0 3.8 37 194-230 9-45 (316)
331 1znw_A Guanylate kinase, GMP k 96.8 0.00063 2.1E-08 61.5 3.7 28 192-219 17-44 (207)
332 3b9q_A Chloroplast SRP recepto 96.8 0.0012 4E-08 63.8 5.7 41 190-230 95-137 (302)
333 3asz_A Uridine kinase; cytidin 96.8 0.00055 1.9E-08 61.7 3.2 28 193-220 4-31 (211)
334 1zu4_A FTSY; GTPase, signal re 96.8 0.0028 9.7E-08 61.7 8.3 37 192-228 102-141 (320)
335 4e22_A Cytidylate kinase; P-lo 96.8 0.0009 3.1E-08 62.6 4.5 31 194-224 26-56 (252)
336 2v9p_A Replication protein E1; 96.8 0.00075 2.6E-08 65.4 4.0 31 189-219 120-150 (305)
337 1vht_A Dephospho-COA kinase; s 96.8 0.00072 2.5E-08 61.4 3.6 36 194-232 3-38 (218)
338 1uj2_A Uridine-cytidine kinase 96.8 0.001 3.5E-08 62.1 4.7 40 194-233 21-68 (252)
339 3ake_A Cytidylate kinase; CMP 96.7 0.001 3.4E-08 59.5 4.3 30 197-226 4-33 (208)
340 3a00_A Guanylate kinase, GMP k 96.7 0.00069 2.4E-08 60.2 3.1 25 196-220 2-26 (186)
341 3lnc_A Guanylate kinase, GMP k 96.7 0.0005 1.7E-08 63.2 2.2 30 190-219 22-52 (231)
342 1rj9_A FTSY, signal recognitio 96.7 0.0033 1.1E-07 60.7 8.0 37 194-230 101-139 (304)
343 2jeo_A Uridine-cytidine kinase 96.7 0.00081 2.8E-08 62.5 3.3 31 191-221 21-51 (245)
344 3exa_A TRNA delta(2)-isopenten 96.7 0.00095 3.2E-08 64.8 3.8 34 196-229 4-37 (322)
345 2og2_A Putative signal recogni 96.7 0.0016 5.5E-08 64.4 5.5 41 190-230 152-194 (359)
346 2grj_A Dephospho-COA kinase; T 96.7 0.00074 2.5E-08 60.9 2.8 38 196-235 13-50 (192)
347 2qm8_A GTPase/ATPase; G protei 96.7 0.004 1.4E-07 60.9 8.3 28 192-219 52-79 (337)
348 3ice_A Transcription terminati 96.6 0.011 3.6E-07 59.1 11.1 138 191-330 170-348 (422)
349 1q3t_A Cytidylate kinase; nucl 96.6 0.0014 4.9E-08 60.4 4.3 33 193-225 14-46 (236)
350 3b6e_A Interferon-induced heli 96.6 0.01 3.6E-07 52.8 9.9 23 196-218 49-71 (216)
351 1t6n_A Probable ATP-dependent 96.6 0.056 1.9E-06 48.5 14.9 59 156-216 12-72 (220)
352 3ney_A 55 kDa erythrocyte memb 96.6 0.0018 6E-08 58.7 4.6 28 193-220 17-44 (197)
353 1j8m_F SRP54, signal recogniti 96.5 0.0043 1.5E-07 59.7 7.5 68 195-262 98-188 (297)
354 2h92_A Cytidylate kinase; ross 96.5 0.0012 4E-08 59.9 3.3 31 195-225 3-33 (219)
355 1qde_A EIF4A, translation init 96.5 0.011 3.9E-07 53.3 9.9 52 158-211 14-67 (224)
356 2qmh_A HPR kinase/phosphorylas 96.5 0.0011 3.9E-08 60.1 3.1 34 194-228 33-66 (205)
357 1ltq_A Polynucleotide kinase; 96.5 0.00079 2.7E-08 64.2 2.2 36 195-231 2-37 (301)
358 1w4r_A Thymidine kinase; type 96.5 0.0048 1.6E-07 55.7 7.2 70 194-266 19-103 (195)
359 2ffh_A Protein (FFH); SRP54, s 96.5 0.0085 2.9E-07 60.6 9.7 70 193-262 96-188 (425)
360 2axn_A 6-phosphofructo-2-kinas 96.5 0.01 3.5E-07 61.5 10.6 39 194-232 34-75 (520)
361 3llm_A ATP-dependent RNA helic 96.5 0.015 5.1E-07 53.4 10.5 23 194-216 75-97 (235)
362 2j37_W Signal recognition part 96.5 0.0046 1.6E-07 63.9 7.5 71 193-263 99-192 (504)
363 3gmt_A Adenylate kinase; ssgci 96.5 0.0078 2.7E-07 55.7 8.4 38 195-234 8-45 (230)
364 3d3q_A TRNA delta(2)-isopenten 96.5 0.0013 4.5E-08 64.6 3.2 33 196-228 8-40 (340)
365 2f6r_A COA synthase, bifunctio 96.4 0.0013 4.4E-08 62.7 3.0 35 195-232 75-109 (281)
366 1x6v_B Bifunctional 3'-phospho 96.4 0.0059 2E-07 64.7 8.2 38 194-231 51-91 (630)
367 3eph_A TRNA isopentenyltransfe 96.4 0.0014 4.9E-08 65.7 3.3 34 195-228 2-35 (409)
368 3u06_A Protein claret segregat 96.4 0.021 7.2E-07 57.4 11.8 41 195-252 139-179 (412)
369 1ex7_A Guanylate kinase; subst 96.4 0.002 6.7E-08 57.8 3.8 26 197-222 3-28 (186)
370 1vec_A ATP-dependent RNA helic 96.4 0.014 4.9E-07 51.8 9.4 19 195-213 40-58 (206)
371 2xxa_A Signal recognition part 96.3 0.0079 2.7E-07 61.0 8.3 70 193-262 98-191 (433)
372 2v3c_C SRP54, signal recogniti 96.3 0.0045 1.6E-07 62.7 6.1 36 194-229 98-136 (432)
373 2pl3_A Probable ATP-dependent 96.2 0.026 9E-07 51.4 10.4 18 195-212 62-79 (236)
374 3iuy_A Probable ATP-dependent 96.2 0.018 6.3E-07 52.1 9.2 20 194-213 56-75 (228)
375 3b85_A Phosphate starvation-in 96.2 0.001 3.5E-08 60.7 0.7 26 193-218 20-45 (208)
376 1q0u_A Bstdead; DEAD protein, 96.2 0.02 6.9E-07 51.6 9.4 18 195-212 41-58 (219)
377 4b3f_X DNA-binding protein smu 96.2 0.019 6.5E-07 61.0 10.5 49 166-229 191-242 (646)
378 3aez_A Pantothenate kinase; tr 96.2 0.0029 9.9E-08 61.3 3.8 28 192-219 87-114 (312)
379 4eaq_A DTMP kinase, thymidylat 96.1 0.0031 1E-07 58.2 3.6 28 193-220 24-51 (229)
380 1odf_A YGR205W, hypothetical 3 96.1 0.0041 1.4E-07 59.6 4.4 28 193-220 29-56 (290)
381 1sq5_A Pantothenate kinase; P- 96.0 0.0028 9.4E-08 61.2 2.9 28 193-220 78-105 (308)
382 1xx6_A Thymidine kinase; NESG, 96.0 0.012 4E-07 52.9 6.8 71 194-266 7-93 (191)
383 3fdi_A Uncharacterized protein 96.0 0.004 1.4E-07 56.3 3.7 29 196-224 7-35 (201)
384 1gtv_A TMK, thymidylate kinase 96.0 0.0017 5.8E-08 58.3 1.1 24 197-220 2-25 (214)
385 1hv8_A Putative ATP-dependent 95.9 0.037 1.3E-06 53.1 10.7 22 195-216 44-65 (367)
386 1u8z_A RAS-related protein RAL 95.9 0.022 7.6E-07 47.9 8.0 23 196-218 5-27 (168)
387 3q72_A GTP-binding protein RAD 95.9 0.01 3.5E-07 50.4 5.8 21 197-217 4-24 (166)
388 3kta_A Chromosome segregation 95.9 0.004 1.4E-07 54.5 3.2 25 196-220 27-51 (182)
389 2oxc_A Probable ATP-dependent 95.9 0.054 1.9E-06 49.2 10.8 54 157-212 23-78 (230)
390 3tqc_A Pantothenate kinase; bi 95.8 0.0038 1.3E-07 60.8 3.1 27 194-220 91-117 (321)
391 3p32_A Probable GTPase RV1496/ 95.8 0.019 6.6E-07 56.3 8.2 26 194-219 78-103 (355)
392 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0038 1.3E-07 63.8 3.0 31 189-219 132-162 (460)
393 1a7j_A Phosphoribulokinase; tr 95.8 0.0038 1.3E-07 59.8 2.8 38 195-232 5-45 (290)
394 2nzj_A GTP-binding protein REM 95.8 0.01 3.4E-07 50.8 5.2 23 196-218 5-27 (175)
395 1nij_A Hypothetical protein YJ 95.8 0.0099 3.4E-07 57.5 5.7 24 196-219 5-28 (318)
396 1lw7_A Transcriptional regulat 95.8 0.0048 1.7E-07 60.8 3.5 31 191-221 164-196 (365)
397 2f7s_A C25KG, RAS-related prot 95.7 0.059 2E-06 48.0 10.4 22 196-217 26-47 (217)
398 1np6_A Molybdopterin-guanine d 95.7 0.0057 2E-07 54.1 3.4 27 193-219 4-30 (174)
399 3bor_A Human initiation factor 95.7 0.023 7.9E-07 52.0 7.7 54 157-212 29-84 (237)
400 3cr8_A Sulfate adenylyltranfer 95.7 0.0042 1.4E-07 64.9 2.9 41 192-232 366-410 (552)
401 1bif_A 6-phosphofructo-2-kinas 95.7 0.045 1.5E-06 55.8 10.5 27 194-220 38-64 (469)
402 2atv_A RERG, RAS-like estrogen 95.7 0.029 9.8E-07 49.4 7.8 25 194-218 27-51 (196)
403 1s2m_A Putative ATP-dependent 95.7 0.053 1.8E-06 53.1 10.6 56 157-214 20-77 (400)
404 1sky_E F1-ATPase, F1-ATP synth 95.6 0.02 6.7E-07 58.5 7.3 26 194-219 150-175 (473)
405 2dpy_A FLII, flagellum-specifi 95.6 0.0099 3.4E-07 60.3 5.1 121 192-312 154-318 (438)
406 2obl_A ESCN; ATPase, hydrolase 95.6 0.0085 2.9E-07 58.9 4.5 119 192-312 68-229 (347)
407 2p67_A LAO/AO transport system 95.6 0.023 8E-07 55.4 7.6 28 192-219 53-80 (341)
408 1c9k_A COBU, adenosylcobinamid 95.6 0.0091 3.1E-07 53.2 4.1 32 198-230 2-33 (180)
409 2ged_A SR-beta, signal recogni 95.6 0.014 4.8E-07 51.1 5.4 26 193-218 46-71 (193)
410 1fzq_A ADP-ribosylation factor 95.5 0.036 1.2E-06 48.2 8.0 25 194-218 15-39 (181)
411 3fe2_A Probable ATP-dependent 95.5 0.017 5.9E-07 53.0 6.1 19 195-213 66-84 (242)
412 1pui_A ENGB, probable GTP-bind 95.5 0.0039 1.3E-07 55.6 1.6 29 190-218 21-49 (210)
413 1p5z_B DCK, deoxycytidine kina 95.5 0.0043 1.5E-07 58.1 1.9 28 193-220 22-49 (263)
414 3sop_A Neuronal-specific septi 95.5 0.0064 2.2E-07 57.6 3.1 22 197-218 4-25 (270)
415 2e87_A Hypothetical protein PH 95.5 0.047 1.6E-06 53.5 9.4 25 194-218 166-190 (357)
416 2orv_A Thymidine kinase; TP4A 95.5 0.079 2.7E-06 49.0 10.3 93 195-311 19-126 (234)
417 3ber_A Probable ATP-dependent 95.4 0.035 1.2E-06 51.4 7.9 19 194-212 79-97 (249)
418 2qag_B Septin-6, protein NEDD5 95.4 0.007 2.4E-07 61.2 3.3 29 190-218 35-65 (427)
419 2ocp_A DGK, deoxyguanosine kin 95.4 0.008 2.7E-07 55.4 3.4 26 195-220 2-27 (241)
420 3dz8_A RAS-related protein RAB 95.4 0.077 2.6E-06 46.3 9.8 23 196-218 24-46 (191)
421 2a9k_A RAS-related protein RAL 95.4 0.036 1.2E-06 47.6 7.4 22 196-217 19-40 (187)
422 3tqf_A HPR(Ser) kinase; transf 95.4 0.0083 2.9E-07 53.2 3.2 25 194-218 15-39 (181)
423 1m8p_A Sulfate adenylyltransfe 95.4 0.0081 2.8E-07 63.1 3.6 37 194-230 395-435 (573)
424 1xti_A Probable ATP-dependent 95.3 0.34 1.2E-05 46.9 14.9 22 195-216 45-66 (391)
425 2z0m_A 337AA long hypothetical 95.3 0.025 8.4E-07 53.8 6.5 34 195-228 31-64 (337)
426 2vp4_A Deoxynucleoside kinase; 95.3 0.0073 2.5E-07 55.4 2.6 26 193-218 18-43 (230)
427 2f9l_A RAB11B, member RAS onco 95.3 0.0087 3E-07 53.1 3.1 23 196-218 6-28 (199)
428 3hdt_A Putative kinase; struct 95.3 0.0091 3.1E-07 55.0 3.3 30 196-225 15-44 (223)
429 2va8_A SSO2462, SKI2-type heli 95.3 0.052 1.8E-06 58.1 9.6 23 192-214 43-65 (715)
430 1oix_A RAS-related protein RAB 95.3 0.0087 3E-07 52.9 3.0 22 197-218 31-52 (191)
431 3ihw_A Centg3; RAS, centaurin, 95.2 0.03 1E-06 49.0 6.4 22 197-218 22-43 (184)
432 2qtf_A Protein HFLX, GTP-bindi 95.2 0.051 1.7E-06 53.7 8.7 22 197-218 181-202 (364)
433 1xjc_A MOBB protein homolog; s 95.1 0.011 3.9E-07 52.0 3.3 25 195-219 4-28 (169)
434 1g8f_A Sulfate adenylyltransfe 95.1 0.019 6.6E-07 59.3 5.5 28 194-221 394-421 (511)
435 2f1r_A Molybdopterin-guanine d 95.1 0.0064 2.2E-07 53.6 1.7 36 196-231 3-43 (171)
436 1zd9_A ADP-ribosylation factor 95.1 0.053 1.8E-06 47.3 7.6 22 196-217 23-44 (188)
437 1f2t_A RAD50 ABC-ATPase; DNA d 95.1 0.012 4.2E-07 50.4 3.3 25 195-219 23-47 (149)
438 2www_A Methylmalonic aciduria 95.1 0.025 8.7E-07 55.4 5.9 24 195-218 74-97 (349)
439 3tmk_A Thymidylate kinase; pho 95.0 0.021 7.1E-07 52.3 4.9 29 194-222 4-32 (216)
440 2j0s_A ATP-dependent RNA helic 95.0 0.081 2.8E-06 52.0 9.6 55 158-214 37-93 (410)
441 3tbk_A RIG-I helicase domain; 95.0 0.2 6.8E-06 51.0 12.8 22 196-217 20-41 (555)
442 3lxw_A GTPase IMAP family memb 95.0 0.07 2.4E-06 49.4 8.5 23 195-217 21-43 (247)
443 2bov_A RAla, RAS-related prote 95.0 0.081 2.8E-06 46.4 8.5 22 196-217 15-36 (206)
444 1nrj_B SR-beta, signal recogni 94.9 0.016 5.5E-07 51.9 3.8 26 194-219 11-36 (218)
445 3v9p_A DTMP kinase, thymidylat 94.9 0.012 4E-07 54.4 2.9 26 194-219 24-49 (227)
446 1tq4_A IIGP1, interferon-induc 94.9 0.014 4.7E-07 58.8 3.6 24 194-217 68-91 (413)
447 4edh_A DTMP kinase, thymidylat 94.9 0.013 4.5E-07 53.4 3.1 27 194-220 5-31 (213)
448 3pey_A ATP-dependent RNA helic 94.9 0.2 6.8E-06 48.4 11.8 21 194-214 43-63 (395)
449 3dkp_A Probable ATP-dependent 94.9 0.15 5.2E-06 46.5 10.3 18 195-212 66-83 (245)
450 3vkw_A Replicase large subunit 94.8 0.046 1.6E-06 55.4 7.2 24 195-218 161-184 (446)
451 2wji_A Ferrous iron transport 94.8 0.013 4.5E-07 50.2 2.8 22 196-217 4-25 (165)
452 2zj8_A DNA helicase, putative 94.8 0.07 2.4E-06 57.2 9.0 21 192-212 36-56 (720)
453 2zej_A Dardarin, leucine-rich 94.8 0.012 4.1E-07 51.4 2.5 22 197-218 4-25 (184)
454 3euj_A Chromosome partition pr 94.8 0.014 4.7E-07 60.0 3.2 41 190-231 25-67 (483)
455 2p5s_A RAS and EF-hand domain 94.8 0.016 5.3E-07 51.3 3.2 26 193-218 26-51 (199)
456 2dyk_A GTP-binding protein; GT 94.8 0.017 5.9E-07 48.5 3.3 22 197-218 3-24 (161)
457 1z2a_A RAS-related protein RAB 94.7 0.015 5.1E-07 49.2 2.9 24 195-218 5-28 (168)
458 3l9o_A ATP-dependent RNA helic 94.7 0.064 2.2E-06 60.6 8.7 22 195-216 199-220 (1108)
459 2gj8_A MNME, tRNA modification 94.7 0.016 5.3E-07 50.3 3.0 25 194-218 3-27 (172)
460 2lkc_A Translation initiation 94.7 0.022 7.4E-07 48.8 3.9 25 193-217 6-30 (178)
461 3cbq_A GTP-binding protein REM 94.7 0.061 2.1E-06 47.5 6.9 22 196-217 24-45 (195)
462 2wsm_A Hydrogenase expression/ 94.7 0.019 6.5E-07 51.6 3.6 26 194-219 29-54 (221)
463 1fuu_A Yeast initiation factor 94.6 0.1 3.5E-06 50.7 9.1 18 195-212 58-75 (394)
464 3ly5_A ATP-dependent RNA helic 94.6 0.059 2E-06 50.2 7.0 18 196-213 92-109 (262)
465 2j9r_A Thymidine kinase; TK1, 94.6 0.036 1.2E-06 50.6 5.3 33 195-227 28-63 (214)
466 1kao_A RAP2A; GTP-binding prot 94.6 0.02 6.8E-07 48.2 3.3 23 196-218 4-26 (167)
467 3lv8_A DTMP kinase, thymidylat 94.6 0.018 6.2E-07 53.4 3.3 26 194-219 26-51 (236)
468 2ce2_X GTPase HRAS; signaling 94.6 0.019 6.5E-07 48.2 3.1 22 197-218 5-26 (166)
469 2wjg_A FEOB, ferrous iron tran 94.6 0.017 5.9E-07 50.1 3.0 22 196-217 8-29 (188)
470 2rcn_A Probable GTPase ENGC; Y 94.6 0.019 6.6E-07 56.6 3.6 27 194-220 214-240 (358)
471 1upt_A ARL1, ADP-ribosylation 94.5 0.023 7.8E-07 48.3 3.6 25 193-217 5-29 (171)
472 3def_A T7I23.11 protein; chlor 94.5 0.098 3.3E-06 48.7 8.3 24 195-218 36-59 (262)
473 1wp9_A ATP-dependent RNA helic 94.5 0.16 5.6E-06 50.1 10.4 33 197-229 25-61 (494)
474 3t34_A Dynamin-related protein 94.5 0.092 3.1E-06 51.4 8.4 21 197-217 36-56 (360)
475 1ek0_A Protein (GTP-binding pr 94.5 0.022 7.4E-07 48.2 3.3 23 196-218 4-26 (170)
476 1z0j_A RAB-22, RAS-related pro 94.5 0.022 7.6E-07 48.2 3.3 23 196-218 7-29 (170)
477 1yrb_A ATP(GTP)binding protein 94.5 0.11 3.8E-06 47.8 8.4 25 195-219 14-38 (262)
478 2gk6_A Regulator of nonsense t 94.5 0.03 1E-06 59.2 5.0 22 196-217 196-217 (624)
479 3eiq_A Eukaryotic initiation f 94.4 0.19 6.5E-06 49.2 10.5 19 195-213 77-95 (414)
480 1wms_A RAB-9, RAB9, RAS-relate 94.4 0.023 7.9E-07 48.6 3.3 22 196-217 8-29 (177)
481 2erx_A GTP-binding protein DI- 94.4 0.023 7.7E-07 48.2 3.2 22 196-217 4-25 (172)
482 3ld9_A DTMP kinase, thymidylat 94.4 0.022 7.4E-07 52.5 3.2 29 193-221 19-47 (223)
483 4i1u_A Dephospho-COA kinase; s 94.4 0.035 1.2E-06 50.6 4.6 35 196-233 10-44 (210)
484 1svi_A GTP-binding protein YSX 94.4 0.029 9.8E-07 49.0 3.9 25 194-218 22-46 (195)
485 1z08_A RAS-related protein RAB 94.4 0.024 8.2E-07 48.1 3.3 23 196-218 7-29 (170)
486 2hf9_A Probable hydrogenase ni 94.4 0.04 1.4E-06 49.6 5.0 26 194-219 37-62 (226)
487 1ky3_A GTP-binding protein YPT 94.3 0.024 8.3E-07 48.6 3.3 24 195-218 8-31 (182)
488 3fht_A ATP-dependent RNA helic 94.3 0.16 5.4E-06 49.6 9.7 55 158-212 25-81 (412)
489 1g16_A RAS-related protein SEC 94.3 0.023 7.9E-07 48.1 3.1 23 196-218 4-26 (170)
490 2fwr_A DNA repair protein RAD2 94.3 0.053 1.8E-06 54.7 6.4 34 196-229 109-142 (472)
491 3iby_A Ferrous iron transport 94.3 0.096 3.3E-06 48.9 7.6 22 197-218 3-24 (256)
492 4tmk_A Protein (thymidylate ki 94.3 0.025 8.4E-07 51.6 3.3 25 195-219 3-27 (213)
493 3q85_A GTP-binding protein REM 94.3 0.022 7.4E-07 48.4 2.8 21 197-217 4-24 (169)
494 2gks_A Bifunctional SAT/APS ki 94.2 0.067 2.3E-06 55.8 7.0 38 194-231 371-411 (546)
495 1c1y_A RAS-related protein RAP 94.2 0.026 9E-07 47.6 3.3 22 196-217 4-25 (167)
496 3fmo_B ATP-dependent RNA helic 94.2 0.11 3.6E-06 49.7 7.9 53 157-212 91-148 (300)
497 1r2q_A RAS-related protein RAB 94.2 0.027 9.2E-07 47.6 3.3 22 196-217 7-28 (170)
498 3qks_A DNA double-strand break 94.2 0.026 8.9E-07 50.8 3.3 26 195-220 23-48 (203)
499 4ag6_A VIRB4 ATPase, type IV s 94.2 0.041 1.4E-06 54.5 5.0 34 194-227 34-70 (392)
500 3bc1_A RAS-related protein RAB 94.1 0.027 9.4E-07 48.7 3.3 22 196-217 12-33 (195)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-76 Score=591.38 Aligned_cols=390 Identities=74% Similarity=1.168 Sum_probs=360.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeE
Q 014743 29 GEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYV 108 (419)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (419)
.++++.||..++++++.++.+..++++.+..+.+.++++++.++++++.++..+.++|++.+.++++.++++..+++.|+
T Consensus 16 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~~~iv~~~~~~~~~ 95 (405)
T 4b4t_J 16 ESGIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYI 95 (405)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTTSCEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCCeEEEEeCCCCEEE
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHh
Q 014743 109 VDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFE 188 (419)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~ 188 (419)
+.+...++.+.++||++|+++..++.+..++|...+|.+..+.+.++|+++|+||||+++++++|+++|.+|+++|++|.
T Consensus 96 v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~ 175 (405)
T 4b4t_J 96 VDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFE 175 (405)
T ss_dssp ECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHH
T ss_pred EecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccc
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 268 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~ 268 (419)
++|+++|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+.++||||||||||++++
T Consensus 176 ~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~ 255 (405)
T 4b4t_J 176 SLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 255 (405)
T ss_dssp HHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTT
T ss_pred hCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhh
Q 014743 269 ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR 348 (419)
Q Consensus 269 ~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~ 348 (419)
+|.+.. ++.+....+++.++|++||++....+|+||+|||+|+.|||||+||||||+.|+||+|+.++|.+||+.|+++
T Consensus 256 ~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 334 (405)
T 4b4t_J 256 TRVEGS-GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK 334 (405)
T ss_dssp SCSCSS-SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCC-CCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence 886532 3455678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhcchhhhHhhhC
Q 014743 349 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 419 (419)
Q Consensus 349 ~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~~ 419 (419)
+++..++|+..||..|+|||||||.++|++|++.|+++++..|+++||+.|+.+++++..+..++..++||
T Consensus 335 ~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~k 405 (405)
T 4b4t_J 335 MNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQETAISVAKLFK 405 (405)
T ss_dssp SBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHTCC---------
T ss_pred CCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCccccccchhHhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-70 Score=554.90 Aligned_cols=380 Identities=44% Similarity=0.751 Sum_probs=336.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCee
Q 014743 28 QGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKY 107 (419)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (419)
+.|.++.+..+|+++.....++.. ........+.++.+..++++++++..|..+|++.+.++++.++++..+++.|
T Consensus 53 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~iv~~~~~~~~ 128 (437)
T 4b4t_I 53 TRCKLKLLRMERIKDHLLLEEEFV----SNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDY 128 (437)
T ss_dssp ----------------------CH----HHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEECTTSEEEEECSSSCCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH----HhHHhhhhHHHHHHHHHHHHHhhcCCCceeEEEEEEecCCEEEEEcCCCCEE
Confidence 347766666666654322122221 1222334566777888889999999999999999999999999999999999
Q ss_pred EEecCCccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHH
Q 014743 108 VVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELF 187 (419)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~ 187 (419)
++.+...++...++||++|+++..++.+..++|...|+.++.+.+++.|+++|+||||+++++++|.+.|.+|+++|+.|
T Consensus 129 ~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f 208 (437)
T 4b4t_I 129 YVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELY 208 (437)
T ss_dssp EEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHH
T ss_pred EEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEeccccccc
Q 014743 188 ESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG 267 (419)
Q Consensus 188 ~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~ 267 (419)
.++|+++|+|+|||||||||||++|+|+|++++.+|+.+++++++++|+|++++.++.+|..|+.++||||||||+|+++
T Consensus 209 ~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~ 288 (437)
T 4b4t_I 209 EEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIG 288 (437)
T ss_dssp HHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSS
T ss_pred HhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHh
Q 014743 268 SARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSR 347 (419)
Q Consensus 268 ~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~ 347 (419)
+.|.+.. .+.+....+++.++|+++|++...++|+||+|||+++.|||||+||||||+.|+|++|+.++|.+||+.|++
T Consensus 289 ~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~ 367 (437)
T 4b4t_I 289 TKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTS 367 (437)
T ss_dssp CCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHT
T ss_pred ccCCCCC-CCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhc
Confidence 9996643 334567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhcchh
Q 014743 348 RMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNM 412 (419)
Q Consensus 348 ~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~~~~~ 412 (419)
++++..++|+..||..|+|||||||.++|++|++.|+++++..|+++||+.|++++.++...+++
T Consensus 368 ~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 368 KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCChhhH
Confidence 99999999999999999999999999999999999999999999999999999999987766543
No 3
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-68 Score=543.44 Aligned_cols=371 Identities=42% Similarity=0.680 Sum_probs=352.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCCcc
Q 014743 36 YLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSI 115 (419)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (419)
+..++++++.+++.+..+.+.+..+++.++.++..++++++.++..|..+|++.+.++++.++++...++.|++.+...+
T Consensus 47 l~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~~~ 126 (428)
T 4b4t_K 47 IYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTL 126 (428)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCEEEEEEEEEEETTEEEEEETTSCEEEECBCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeEEEEEccCCeeEEecCCCCEEEEeccccc
Confidence 34567888888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCC
Q 014743 116 DITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP 195 (419)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p 195 (419)
+.+.+++|++|+++..++.+..++|...++.+..+.+.+.|+++|+||||++++++.|.+.|.+|+++|+.|.++|+++|
T Consensus 127 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~p 206 (428)
T 4b4t_K 127 DRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPP 206 (428)
T ss_dssp CTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC
T ss_pred cHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCC
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 275 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~ 275 (419)
+|+|||||||||||++|+++|++++++|+.+++++++++|+|+++..++.+|..|+.++||||||||+|++++.|.+..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~- 285 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ- 285 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred CCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcC-CCCHHHHHHHHHHHHhhcccCCC
Q 014743 276 GNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRG 354 (419)
Q Consensus 276 ~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~-~P~~~~r~~Il~~~~~~~~~~~~ 354 (419)
.+.+....+++.++|.+||++....+++||+|||+++.|||+++||||||+.|+|| +|+.++|..||+.+++++++..+
T Consensus 286 ~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~ 365 (428)
T 4b4t_K 286 TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPE 365 (428)
T ss_dssp SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTT
T ss_pred CCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcc
Confidence 33456788899999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 014743 355 IDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 355 ~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~ 407 (419)
+|+..||..|+|||||||.++|++|++.|+++++..|+++||+.|+.++++..
T Consensus 366 ~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~~ 418 (428)
T 4b4t_K 366 ADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 418 (428)
T ss_dssp CCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSCSC
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999877544
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-68 Score=544.93 Aligned_cols=359 Identities=44% Similarity=0.759 Sum_probs=338.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCCccccccCCCCCeee
Q 014743 48 RQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVA 127 (419)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (419)
++++.+++.+......++.+....+++++.++..+.++|++.+.++++..+++..++++|++.+...++...+++|++|.
T Consensus 68 ~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~v~ 147 (437)
T 4b4t_L 68 RRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVT 147 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTTSCCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeheeeecCCcEEEEECCCCEEEEecccccCHhhcCCCceee
Confidence 34555566666666677788888889999999999999999889999999999999999999999999999999999999
Q ss_pred ecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCCh
Q 014743 128 LRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTG 207 (419)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtG 207 (419)
++..++.+..++|...+|.+..+.+.+.|+++|+||||+++++++|++.|.+|+++|++|.++|+++|+|+|||||||||
T Consensus 148 ~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtG 227 (437)
T 4b4t_L 148 LDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTG 227 (437)
T ss_dssp ECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSS
T ss_pred EcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHH
Q 014743 208 KTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML 287 (419)
Q Consensus 208 KT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~ 287 (419)
||++|+++|++++++|+.+++++++++|+|+++..++.+|..|+.++||||||||+|+++++|.+.+ ...+....+++.
T Consensus 228 KTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~ 306 (437)
T 4b4t_L 228 KTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLM 306 (437)
T ss_dssp HHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCC-CCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986643 334567888999
Q ss_pred HHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCC
Q 014743 288 ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA 367 (419)
Q Consensus 288 ~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~ 367 (419)
++|.+||++...++++||+|||+|+.|||+|+||||||+.|+||+|+.++|.+||+.|++++++..++|+..||..|+||
T Consensus 307 ~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~ 386 (437)
T 4b4t_L 307 ELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGF 386 (437)
T ss_dssp HHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSC
T ss_pred HHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 014743 368 SGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 368 sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~ 407 (419)
||+||.++|++|++.|+++++..|+.+||..|++++.+..
T Consensus 387 sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 387 NGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998754
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-68 Score=542.91 Aligned_cols=371 Identities=45% Similarity=0.737 Sum_probs=336.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhc-----------------------
Q 014743 38 QHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGK----------------------- 94 (419)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 94 (419)
.+.+.++.+++.++.+..++..+.+.++++++..++++...+..|..++.+.+.++.
T Consensus 32 ~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~ 111 (434)
T 4b4t_M 32 TRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNT 111 (434)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCEEEECCC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhhhhhccchhhhhccchhhhhhhhhhhhhc
Confidence 445556677788888888888888899999999999999999988876654433321
Q ss_pred ---ccchhhccCCCeeEEecCCccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHH
Q 014743 95 ---NKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIK 171 (419)
Q Consensus 95 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~ 171 (419)
..+++++.++..|++.+...++...++||++|+++..++.+..++|.+.++.+..+.+++.|+++|+||||++++++
T Consensus 112 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~ 191 (434)
T 4b4t_M 112 AVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIE 191 (434)
T ss_dssp -CCSEEEEEETTSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHH
T ss_pred ccCceEEEEcCCCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHH
Confidence 24567778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHH
Q 014743 172 EIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 251 (419)
Q Consensus 172 ~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~ 251 (419)
+|.+.|.+|+++|++|.++|+++|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+
T Consensus 192 ~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~ 271 (434)
T 4b4t_M 192 ELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAK 271 (434)
T ss_dssp HHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcC
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~ 331 (419)
.++||||||||+|+++++|.+.. .+++....+++.++|+.||++...++|+||+|||+|+.|||+|+||||||+.|+||
T Consensus 272 ~~aP~IifiDEiDal~~~R~~~~-~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~ 350 (434)
T 4b4t_M 272 EKAPTIIFIDELDAIGTKRFDSE-KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFP 350 (434)
T ss_dssp HHCSEEEEEECTHHHHCCCSSGG-GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECC
T ss_pred hcCCeEEeecchhhhhhccCCCC-CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeC
Confidence 99999999999999999986543 33557788999999999999998899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhc
Q 014743 332 NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 409 (419)
Q Consensus 332 ~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~~ 409 (419)
+|+.++|.+||+.|++++++..++|+..||..|+|||||||.++|++|++.|+++++..|+.+||..|+.++.++...
T Consensus 351 lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 351 LPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp CCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSCCC
T ss_pred CcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876543
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-66 Score=529.07 Aligned_cols=315 Identities=54% Similarity=0.882 Sum_probs=301.5
Q ss_pred hcccchhhccCCCeeEEecCCccccccCCCCCeeeecCCceeEeecCCCCccccccccccccCCCCCcccccCcHHHHHH
Q 014743 93 GKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKE 172 (419)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~I~G~~~~~~~ 172 (419)
+++.++++...+++|+|.+...++.+.++||++|+++..++.+..++|.+.|+.+..|.+++.|+++|+||||+++++++
T Consensus 141 ~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~ 220 (467)
T 4b4t_H 141 EDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEK 220 (467)
T ss_dssp CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHH
T ss_pred CCCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHH
Confidence 45577888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHh
Q 014743 173 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMARE 252 (419)
Q Consensus 173 l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~ 252 (419)
|++.|.+|+.+|++|.++|+.+|+|+|||||||||||++|+++|++++++|+.+++++++++|+|++++.++.+|..|+.
T Consensus 221 L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 221 LREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMART 300 (467)
T ss_dssp HHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCC
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 332 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~ 332 (419)
++||||||||+|+++++|.+.+ .+.+....+++.++|.+|+++...++|+||+|||+++.|||+|+||||||+.|+|++
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l 379 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDG-AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSS-CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC
T ss_pred cCCceEeecccccccccccCcC-CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC
Confidence 9999999999999999987643 334567788999999999999989999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhh
Q 014743 333 PNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 408 (419)
Q Consensus 333 P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~ 408 (419)
|+.++|.+||+.|++++++..++|+..||..|+|||||||.++|++|++.|+++++..|+++||+.|+.+++....
T Consensus 380 Pd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~ 455 (467)
T 4b4t_H 380 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 455 (467)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987543
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.4e-51 Score=445.05 Aligned_cols=266 Identities=38% Similarity=0.715 Sum_probs=200.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
..++|+++|++|+|+++++++|.+.|.+|+++|+.|.++|+.+|+++|||||||||||++|+++|++++.+|+.++++++
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 232 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 232 ~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
+++|+|++++.++++|..|+..+||||||||||++++.|+... +..+....+++.+||.+||++....+|+||+|||+|
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~-~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p 626 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 626 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCS
T ss_pred hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCC-CCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCc
Confidence 9999999999999999999999999999999999999986432 122344568889999999999988999999999999
Q ss_pred chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----
Q 014743 312 DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER---- 387 (419)
Q Consensus 312 ~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~---- 387 (419)
+.||++++||||||+.|+||+|+.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++.
T Consensus 627 ~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~ 706 (806)
T 3cf2_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 706 (806)
T ss_dssp SSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC--
T ss_pred hhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ---------------------CCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 388 ---------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 388 ---------------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
...|+++||+.|+.++.|+-+...+..++-|
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~ 758 (806)
T 3cf2_A 707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 758 (806)
T ss_dssp ---------------------CCC----CCTTTC---------------CCC
T ss_pred hhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 1359999999999999999888877777666
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.2e-48 Score=417.89 Aligned_cols=252 Identities=40% Similarity=0.741 Sum_probs=233.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
....|+++|+||+|+++++++|++.|.+|+++|++|.++|+.+|+|+|||||||||||+|||++|++++.+|+.++++++
T Consensus 195 ~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 195 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp SCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred cccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 232 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 232 ~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
+++|+|+++..++.+|+.|+.++||||||||||.|+++|.+.. +....+++.+++..|+++...++|+||+|||++
T Consensus 275 ~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~----~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~ 350 (806)
T 3cf2_A 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC----CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSST
T ss_pred hcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC----ChHHHHHHHHHHHHHhcccccCCEEEEEecCCh
Confidence 9999999999999999999999999999999999999885432 223456778888888888888899999999999
Q ss_pred chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----
Q 014743 312 DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER---- 387 (419)
Q Consensus 312 ~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~---- 387 (419)
+.+|++++||||||+.|+|+.|+.++|.+||+.+++++.+..++|+..||..|+||+|+||..+|++|++.|+++.
T Consensus 351 d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i 430 (806)
T 3cf2_A 351 NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp TTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998762
Q ss_pred -------------CCCCCHHHHHHHHHHHHhhh
Q 014743 388 -------------RIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 388 -------------~~~vt~eD~~~Al~~v~~~~ 407 (419)
...|+.+||..|+..+.+..
T Consensus 431 ~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp GGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred cccccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 24588999999999887654
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.3e-44 Score=346.26 Aligned_cols=253 Identities=40% Similarity=0.680 Sum_probs=214.0
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
.+|+++|+||+|++++++.|.+.|.+|+.+++.|..+|+..++|++|+||||||||+|+++||+.++.+++.++++++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 234 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 234 ~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
.|.|+.+..++.+|+.++...|+|+|+||+|.++..|.... .....+.+.+++.+|++......++++++||+|+.
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~----~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~ 158 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE----TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 158 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc----chHHHHHHHHHHHhhhcccccCCEEEEeecCChhh
Confidence 99999999999999999999999999999999887664321 11223556788888888878888999999999999
Q ss_pred hhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhh---cccCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhc-
Q 014743 314 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR---MNLMRGIDLKKIAEKM--NGASGAELKAVCTEAGMFALRER- 387 (419)
Q Consensus 314 ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~---~~~~~~~dl~~la~~t--~G~sgadi~~l~~~A~~~a~~~~- 387 (419)
+|++++||||||+.|+|+.|+.++|.+||+.+++. ..+..++|+..+|..| +||||+||.++|++|++.|+++.
T Consensus 159 LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 159 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998854 4566789999999975 59999999999999999998752
Q ss_pred ----------CCCCCHHHHHHHHHHHHhhhhcc
Q 014743 388 ----------RIHVTQEDFEMAVAKVMKKETEK 410 (419)
Q Consensus 388 ----------~~~vt~eD~~~Al~~v~~~~~~~ 410 (419)
...|+++||+.|+.++.++....
T Consensus 239 ~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 239 ARQKSGNEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------CCBCHHHHHHHHTTCCCCC---
T ss_pred hhccccccccCCeecHHHHHHHHHHhcCCCChh
Confidence 35799999999999998865543
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.2e-43 Score=347.12 Aligned_cols=266 Identities=38% Similarity=0.697 Sum_probs=234.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
+.++|+++|++|+|++++++.|.+++.+|+.+|+.|.++|+.++.++||+||||||||++|+++|++++.+++.++++++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 232 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 232 ~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
.++|+|+.+..++.+|..|+...|+||||||+|.+++.+....... .....+.+.+++..++++....+++||+|||++
T Consensus 86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG-GGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCS-SCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCc-chHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 9999999999999999999999999999999999988764321110 011123455666666666667789999999999
Q ss_pred chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----
Q 014743 312 DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER---- 387 (419)
Q Consensus 312 ~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~---- 387 (419)
+.+|++++|+|||+..++|++|+.++|.+|++.+++..++..++++..++..++||+|+||.++|++|++.|.++.
T Consensus 165 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~ 244 (301)
T 3cf0_A 165 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 244 (301)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998888888999999999999999999999999999887642
Q ss_pred ---------------------CCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 388 ---------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 388 ---------------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
...|+.+||+.|+.++.++.+...+..++-|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~ 296 (301)
T 3cf0_A 245 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 296 (301)
T ss_dssp C--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHH
T ss_pred hhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 1369999999999999887777666665556
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.1e-42 Score=338.46 Aligned_cols=259 Identities=34% Similarity=0.570 Sum_probs=231.1
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-CCceEEEeCcch
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSEL 231 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-~~~~i~v~~s~l 231 (419)
.+.|+++|+||+|++++++.|.+.+.+|+++|++|.. +..+++++|||||||||||++|+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 3678999999999999999999999999999999974 46778999999999999999999999998 889999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc-CCCeEEEEEeCC
Q 014743 232 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA-SNKIKVLMATNR 310 (419)
Q Consensus 232 ~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~-~~~v~VI~tTn~ 310 (419)
.++|+|+.+..++.+|..++...|+||||||+|.+++.+... ......+++.+++..++++.. ..+++||+|||+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC----CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc----cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 999999999999999999999999999999999999887542 234456777888888887753 578999999999
Q ss_pred cchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Q 014743 311 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER-- 387 (419)
Q Consensus 311 ~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~-- 387 (419)
++.+|++++| ||+..+++++|+.++|.+|++.+++..+.. .+.++..|+..|+||+|+||..+|++|++.|+++.
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999877653 66789999999999999999999999999998752
Q ss_pred -----------------------------------------------CCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 388 -----------------------------------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 388 -----------------------------------------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
...|+++||..|+.++.++.+...+..++-|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~ 314 (322)
T 1xwi_A 237 ATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKF 314 (322)
T ss_dssp CSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 1369999999999999998877776666665
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.7e-41 Score=322.95 Aligned_cols=257 Identities=59% Similarity=0.999 Sum_probs=240.0
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCc
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s 229 (419)
+.+...|+.+|++|+|++++++.|.+++..|+.+++.|..+|+.++.++||+||||||||++|+++|+.++.+++.++++
T Consensus 6 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~ 85 (285)
T 3h4m_A 6 MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGS 85 (285)
T ss_dssp EEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred ccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 230 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 230 ~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
++...+.|.....++.+|..++...|+||||||+|.+++++.+.. .+.+...++.+.++++.++++....+++||+|||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL-TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSC-CGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcccc-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 999999999999999999999999999999999999998775432 2345678889999999998877778999999999
Q ss_pred CcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Q 014743 310 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRI 389 (419)
Q Consensus 310 ~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~ 389 (419)
.++.+++++++++||+..+.|++|+.++|.+|++.+++...+..++++..++..+.||+++||..+|++|...|++++..
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~ 244 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD 244 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhh
Q 014743 390 HVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 390 ~vt~eD~~~Al~~v~~~~ 407 (419)
.|+.+||..|+.++....
T Consensus 245 ~I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 245 YVTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp SBCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc
Confidence 999999999999998754
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=8e-41 Score=345.44 Aligned_cols=250 Identities=45% Similarity=0.763 Sum_probs=226.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~ 234 (419)
.+..+|++|+|++++++++.+.+.. +.+|..|.++|+..|+++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5678999999999999999999876 789999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 235 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 235 ~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
|+|.+...++.+|..|+...|+||||||+|.++..|... ..+.+.+..+++.+++..++++....+++||+|||+++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~-~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG-LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc-cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 999999999999999999999999999999999877532 2334556677888999999887777899999999999999
Q ss_pred hHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 014743 315 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE 394 (419)
Q Consensus 315 d~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~e 394 (419)
|++++||||||+.|.|++|+.++|.+|++.+++..++..++++..++..|+||+|+||.++|++|+..|.+++...|+.+
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~ 247 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMK 247 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHHhh
Q 014743 395 DFEMAVAKVMKK 406 (419)
Q Consensus 395 D~~~Al~~v~~~ 406 (419)
||..|+.++...
T Consensus 248 dl~~al~~v~~~ 259 (476)
T 2ce7_A 248 DFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhcC
Confidence 999999998753
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.4e-41 Score=332.67 Aligned_cols=261 Identities=34% Similarity=0.571 Sum_probs=226.4
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
.+.+.|+++|++|+|++++++.|.+++.+|+.+|++|.. +..++.++|||||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 345789999999999999999999999999999999987 5678899999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc-cCCCeEEEEEeC
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-ASNKIKVLMATN 309 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~-~~~~v~VI~tTn 309 (419)
+.++|+|..+..++.+|..++...|+||||||||.+.+.+.+.. .. ...++..+++..+++.. ...+++||+|||
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~-~~---~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE-SE---ASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------C---CTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc-ch---HHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 99999999999999999999999999999999999998774321 11 22345566677777663 456899999999
Q ss_pred CcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Q 014743 310 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR 388 (419)
Q Consensus 310 ~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~ 388 (419)
+++.+|+++++ ||+..++|++|+.++|.+|++.+++..... .+.++..|+..++||+|+||..+|++|.+.|+++..
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999876643 667899999999999999999999999999987631
Q ss_pred -------------------------------------------CCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 389 -------------------------------------------IHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 389 -------------------------------------------~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
..|+.+||..|++.+.++.+...+...+-|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~ 313 (322)
T 3eie_A 241 SATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQF 313 (322)
T ss_dssp HCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 359999999999999998777666555555
No 15
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=7.8e-40 Score=311.97 Aligned_cols=253 Identities=42% Similarity=0.696 Sum_probs=224.8
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
+..+.|+.+|++|+|++++++++.+.+.. +.+++.|..+|...|.+++|+||||||||++|+++|+.++.+++.+++++
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~ 80 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH
Confidence 34567889999999999999999998876 88899999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 310 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~ 310 (419)
+...+.|.....++.+|..+....|+++||||+|.+...+.... .+......+.+.+++..++++....+++||+|||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 159 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR 159 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS-CCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc-CCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC
Confidence 99999999999999999999999999999999999988764321 22334455677788888887777788999999999
Q ss_pred cchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 014743 311 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH 390 (419)
Q Consensus 311 ~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~ 390 (419)
++.++++++++|||++.+.|++|+.++|.+|++.+++..++..++++..++..++||+++||..+|++|...|.+++...
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~ 239 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV 239 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999998888888999999999999999999999999999999988899
Q ss_pred CCHHHHHHHHHHHHh
Q 014743 391 VTQEDFEMAVAKVMK 405 (419)
Q Consensus 391 vt~eD~~~Al~~v~~ 405 (419)
|+.+||+.|+.++..
T Consensus 240 i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 240 VSMVEFEKAKDKIMM 254 (257)
T ss_dssp BCHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhc
Confidence 999999999998864
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.6e-40 Score=332.54 Aligned_cols=261 Identities=34% Similarity=0.570 Sum_probs=219.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
.....|+++|++|+|++++++.|.+++.+|+.+|++|.. +..+++++|||||||||||++|+++|++++.+++.+++++
T Consensus 41 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~ 119 (355)
T 2qp9_X 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 119 (355)
T ss_dssp ------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred hcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHH
Confidence 345678899999999999999999999999999999987 6678899999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc-CCCeEEEEEeC
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA-SNKIKVLMATN 309 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~-~~~v~VI~tTn 309 (419)
+.+.|+|..+..++.+|..++...|+||||||+|.+.+.|... ......++..+++..++++.. ..+++||+|||
T Consensus 120 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn 195 (355)
T 2qp9_X 120 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 195 (355)
T ss_dssp HHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---CCEEEEEEES
T ss_pred HhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC----cchHHHHHHHHHHHHhhcccccCCCeEEEeecC
Confidence 9999999999999999999999999999999999998877432 223344556677777766543 46899999999
Q ss_pred CcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Q 014743 310 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER- 387 (419)
Q Consensus 310 ~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~- 387 (419)
+++.++++++| ||+..++|++|+.++|.+||+.+++..+. ..+.++..|+..|+||+|+||..+|++|++.|+++.
T Consensus 196 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 196 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 273 (355)
T ss_dssp CGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999987764 366789999999999999999999999999998762
Q ss_pred ------------------------------------------CCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 388 ------------------------------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 388 ------------------------------------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
...|+++||..|+..+.|+.....+..++-|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~ 346 (355)
T 2qp9_X 274 SATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQF 346 (355)
T ss_dssp HCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHH
T ss_pred HhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 1359999999999999998877776666655
No 17
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=309.07 Aligned_cols=254 Identities=38% Similarity=0.658 Sum_probs=202.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhh
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 235 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~ 235 (419)
|+.+|++|+|++++++.|.+.+.. +.+|+.|..+|+.++.++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 567899999999999999998876 8889999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 236 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 236 ~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.|.....++.+|..+....|+||||||+|.++..+........+...+..+.+++..+++.....+++||+|||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 99999999999999999999999999999998877543222223455677888888888766677899999999999999
Q ss_pred HHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q 014743 316 QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID--LKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 393 (419)
Q Consensus 316 ~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~d--l~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~ 393 (419)
++++++|||+..++|++|+.++|.+|++.+++..++..+.+ +..++..+.||+|+||..+|++|+..|.+++...|+.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~ 239 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCB
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999998876654433 4789999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHhhhhcc
Q 014743 394 EDFEMAVAKVMKKETEK 410 (419)
Q Consensus 394 eD~~~Al~~v~~~~~~~ 410 (419)
+||..|+.++.+.....
T Consensus 240 ~d~~~a~~~~~~~~~~~ 256 (262)
T 2qz4_A 240 LNFEYAVERVLAGTAKK 256 (262)
T ss_dssp CCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccChhhh
Confidence 99999999998766543
No 18
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.5e-39 Score=333.05 Aligned_cols=261 Identities=34% Similarity=0.566 Sum_probs=221.9
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-CCceEEEeCc
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGS 229 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-~~~~i~v~~s 229 (419)
.....|+++|++|+|++++++.|.+.+.+|+.+|++|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 445678999999999999999999999999999999874 45678999999999999999999999999 8899999999
Q ss_pred chhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc-CCCeEEEEEe
Q 014743 230 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA-SNKIKVLMAT 308 (419)
Q Consensus 230 ~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~-~~~v~VI~tT 308 (419)
++.+.|+|..+..++.+|..++...|+||||||||.+++.+... ......+++.+++..++++.. ..+++||+||
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~at 278 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 278 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC----CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEE
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc----cccHHHHHHHHHHHHHhCcccCCCCEEEEecC
Confidence 99999999999999999999999999999999999998877542 223345677788888887653 5689999999
Q ss_pred CCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 014743 309 NRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER 387 (419)
Q Consensus 309 n~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~ 387 (419)
|+++.++++++| ||+..++|++|+.++|..|++.++...+. ..+.++..||..|+||+|+||..+|++|.+.|+++.
T Consensus 279 n~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 279 NIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp SCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred CCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999987665 366789999999999999999999999999998751
Q ss_pred -------------------------------------------------CCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 388 -------------------------------------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 388 -------------------------------------------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
...|+++||..|+..+.|+.+...+...+-|
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~ 436 (444)
T 2zan_A 357 QSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKF 436 (444)
T ss_dssp HHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred HhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 1368999999999999998877777666666
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.3e-38 Score=328.99 Aligned_cols=250 Identities=40% Similarity=0.741 Sum_probs=227.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~ 234 (419)
.++.+|++|+|++.++++|.+.+..|+.+|++|..+|..++.++||+||||||||++|+++|++++.+|+.++|+++.+.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 235 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 235 ~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
|+|+..+.++.+|..|....|+||||||||.+++++... ......+++.+++..+++.....+++||+|||+++.+
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~----~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC----CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGB
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc----cchHHHHHHHHHHHHhhccccCCceEEEEecCCcccc
Confidence 999999999999999999999999999999999877432 2233345555666666666667789999999999999
Q ss_pred hHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC------
Q 014743 315 DQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR------ 388 (419)
Q Consensus 315 d~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~------ 388 (419)
+++++++|||+..++|++|+.++|.+||+.+++.+.+..++++..++..+.||+++||..+|++|++.|+++..
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~ 433 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTT
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999988899999999999999999999999999999988642
Q ss_pred -----------CCCCHHHHHHHHHHHHhhhh
Q 014743 389 -----------IHVTQEDFEMAVAKVMKKET 408 (419)
Q Consensus 389 -----------~~vt~eD~~~Al~~v~~~~~ 408 (419)
..++++||..|+.++.++..
T Consensus 434 ~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp CSSCCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred ccccchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 25899999999999987653
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-38 Score=328.94 Aligned_cols=249 Identities=45% Similarity=0.751 Sum_probs=229.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhh
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 235 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~ 235 (419)
|..+|++|+|+++++.++.+.+.. +.+|..|..+|+..|+++||+||||||||+|+++||++++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999998876 7889999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 236 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 236 ~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+|.....++.+|+.++...|+|+||||||.++..+... ..+.+.+..+.+.+++..+++......++||++||+|+.+|
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~-~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD 183 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 183 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS-TTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccC-cCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcC
Confidence 99999999999999988889999999999998776431 12345667788899999999888778899999999999999
Q ss_pred HHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 014743 316 QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQED 395 (419)
Q Consensus 316 ~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD 395 (419)
++++|+||||+.|.|++|+.++|.+||+.+++...+..++++..+|..++||+|+||.++|++|+..|.+++...|+.+|
T Consensus 184 ~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~d 263 (499)
T 2dhr_A 184 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 263 (499)
T ss_dssp TTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHH
T ss_pred cccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Confidence 99999999999999999999999999999998888888999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHHhh
Q 014743 396 FEMAVAKVMKK 406 (419)
Q Consensus 396 ~~~Al~~v~~~ 406 (419)
|+.|+.++...
T Consensus 264 l~~al~~v~~~ 274 (499)
T 2dhr_A 264 LEEAADRVMML 274 (499)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhcc
Confidence 99999999764
No 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=4.3e-37 Score=292.51 Aligned_cols=246 Identities=44% Similarity=0.753 Sum_probs=218.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
...|..+|++|+|+++++.++.+.+.. +.++..+..+++..+++++|+||||||||+|++++++.++.+++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 456889999999999999999998765 6788999999999999999999999999999999999999999999999998
Q ss_pred hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 233 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 233 ~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
..+.+.....++.+|+.+....|+++|+||+|.++..+... ....+....+.+.+++..+++......++++++||+|+
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~-~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc-ccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 88888888889999999988889999999999998766421 11234566677888888888877777889999999999
Q ss_pred hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 014743 313 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVT 392 (419)
Q Consensus 313 ~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt 392 (419)
.+|++++|++||+..++|+.|+.++|.+|++.+.+...+..++++..+|..++||+|+||..+|++|+..|.+++...|+
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~ 245 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 245 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999988888999
Q ss_pred HHHHHHHH
Q 014743 393 QEDFEMAV 400 (419)
Q Consensus 393 ~eD~~~Al 400 (419)
.+||+.|+
T Consensus 246 ~~dl~~a~ 253 (254)
T 1ixz_A 246 MKDLEEAA 253 (254)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999886
No 22
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=302.61 Aligned_cols=261 Identities=34% Similarity=0.592 Sum_probs=224.7
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
...+.|+.+|++|+|++++++.|.+.+..|+.+|+.|..++ .++.++||+||||||||++|+++|.+++.+++.+++++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 45567899999999999999999999999999999987765 67899999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc--cCCCeEEEEEe
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE--ASNKIKVLMAT 308 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~--~~~~v~VI~tT 308 (419)
+...|.|..+..++.+|..++...|+||||||||.+++.+... .+....+.+.+++..+++.. ...+++||+||
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~at 228 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG----EHESSRRIKTEFLVQLDGATTSSEDRILVVGAT 228 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----CCCCEEEEEEE
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC----cchHHHHHHHHHHHHHhcccccCCCCEEEEEec
Confidence 9999999999999999999999999999999999998876431 23344566667777777653 24589999999
Q ss_pred CCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 014743 309 NRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER 387 (419)
Q Consensus 309 n~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~ 387 (419)
|+++.+++++++ ||+..++++.|+.++|.+|+..+++.... ..+.++..|+..++||+|+||..+|++|...++++.
T Consensus 229 n~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 229 NRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp SCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred CChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 99999999999999999999998876543 245568899999999999999999999999998753
Q ss_pred ------------CCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 388 ------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 388 ------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
...|+.+||..|+.++.++.....+...+-|
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~ 349 (357)
T 3d8b_A 307 QTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENW 349 (357)
T ss_dssp CC----------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHH
T ss_pred hhhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3579999999999999998877777766666
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-36 Score=295.88 Aligned_cols=265 Identities=35% Similarity=0.579 Sum_probs=217.9
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCc
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s 229 (419)
..+.+.|+.+|++|+|++++++.|.+.+..|+.+|++|..++ .++.++||+||||||||++|+++|++++.+++.++++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 88 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAA 88 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEEST
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHH
Confidence 345577899999999999999999999999999999988765 5678999999999999999999999999999999999
Q ss_pred chhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 230 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 230 ~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
++...+.|.....++.+|..+....|+||||||+|.++..+.... ..........++..++.........+++||++||
T Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 89 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE-HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp TTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred HHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc-chHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 999999999999999999999999999999999999988764321 1122333333444343332211235799999999
Q ss_pred CcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Q 014743 310 RIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER- 387 (419)
Q Consensus 310 ~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~- 387 (419)
+++.+++++++ ||+..+++++|+.++|..|++.+++.... ..+.++..++..+.||+|+||..+|++|...++++.
T Consensus 168 ~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 168 RPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELN 245 (297)
T ss_dssp CGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC
T ss_pred ChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 99999999999999999999998877543 244568889999999999999999999999998864
Q ss_pred -----------CCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 388 -----------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 388 -----------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
...|+.+||..|+..+.++.........+-|
T Consensus 246 ~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~ 287 (297)
T 3b9p_A 246 VEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 287 (297)
T ss_dssp --------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHH
T ss_pred hhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2579999999999998877666555555555
No 24
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.6e-35 Score=285.86 Aligned_cols=245 Identities=44% Similarity=0.756 Sum_probs=217.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
..|+.+|++|+|++++++++.+.+.. +.++..+..+++..+.+++|+||||||||+|++++++.+..+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 44788999999999999999988765 67888999999999999999999999999999999999999999999999988
Q ss_pred hhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 234 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 234 ~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
.+.+.....++.+|+.+....|+++|+||+|.++..+... ......+..+.+.+++.++++......++++++||+|+.
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~-~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc-cCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 8888888889999999988889999999999987665321 112345667788889999988777777899999999999
Q ss_pred hhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q 014743 314 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ 393 (419)
Q Consensus 314 ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~ 393 (419)
+|++++|++||+..++|++|+.++|.+|++.+++...+..++++..+|..++||+|+||..+|++|+..|.+++...|+.
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~ 270 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 270 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCH
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999998888889999
Q ss_pred HHHHHHH
Q 014743 394 EDFEMAV 400 (419)
Q Consensus 394 eD~~~Al 400 (419)
+||+.|+
T Consensus 271 ~dl~~a~ 277 (278)
T 1iy2_A 271 KDLEEAA 277 (278)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999886
No 25
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.6e-39 Score=356.29 Aligned_cols=267 Identities=38% Similarity=0.712 Sum_probs=221.6
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
.....|.++|++++|++++++.|.+++.+|+.+++.|.++++.++.++||+||||||||++|+++|+.++.+++++++++
T Consensus 467 ~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 546 (806)
T 1ypw_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred hcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 310 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~ 310 (419)
+.++|+|+.++.++.+|+.++...|+||||||||.+++.|.... +..+....+++.++|..|+++....+++||+|||+
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~ 625 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 625 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCC-SHHHHHHHHHHHHHHTTCC------CCBCCCCCBS
T ss_pred hhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCC-CCcchhHHHHHHHHHHHHhcccccCCeEEEEecCC
Confidence 99999999999999999999999999999999999998875321 11123556788899999998888889999999999
Q ss_pred cchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc---
Q 014743 311 IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER--- 387 (419)
Q Consensus 311 ~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~--- 387 (419)
++.+|++++|||||+..|+|++|+.++|.+||+.+++..++..++++..|+..+.||||+||..+|++|++.|+++.
T Consensus 626 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~ 705 (806)
T 1ypw_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 705 (806)
T ss_dssp CGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC---
T ss_pred cccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888889999999999999999999999999999998763
Q ss_pred ----------------------CCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 388 ----------------------RIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 388 ----------------------~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
...|+.+||+.|+..+.++.+...+...+-|
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~ 758 (806)
T 1ypw_A 706 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 758 (806)
T ss_dssp ---------------------CCTTTTTTSSCCCCCC----------------
T ss_pred HHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 1258899999998888877776666666555
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=3.1e-39 Score=309.19 Aligned_cols=254 Identities=39% Similarity=0.699 Sum_probs=217.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
+.|+.+|++|+|++++++.+.+.+.. +.+|+.|..+|...+.++||+||||||||++|+++|++++.+++.++++++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 46788999999999999999998875 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc-CCCeEEEEEeCCcc
Q 014743 234 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA-SNKIKVLMATNRID 312 (419)
Q Consensus 234 ~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~-~~~v~VI~tTn~~~ 312 (419)
.+.|.....++.+|..+....|+||||||+|.+...+...+....+....+.+.+++..+++... ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 99998888888999999999999999999999987763322111122222345566766765543 34599999999999
Q ss_pred hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 014743 313 ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVT 392 (419)
Q Consensus 313 ~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt 392 (419)
.++++++++|||+..++|++|+.++|.+|++.+++.+.+..++++..++..+.||+|+||..+|++|...|.+++...|+
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~ 242 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcC
Confidence 99999999999999999999999999999999998888878888999999999999999999999999999877778999
Q ss_pred HHHHHHHHHHHHhhhh
Q 014743 393 QEDFEMAVAKVMKKET 408 (419)
Q Consensus 393 ~eD~~~Al~~v~~~~~ 408 (419)
.+||..|+.++.+...
T Consensus 243 ~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 243 QQHLKEAVERGIAGLE 258 (268)
T ss_dssp HHHHHTSCTTCCCCCC
T ss_pred HHHHHHHHHHHhhcch
Confidence 9999999998876554
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=297.47 Aligned_cols=266 Identities=35% Similarity=0.596 Sum_probs=212.7
Q ss_pred cccccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEE
Q 014743 146 LVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 225 (419)
Q Consensus 146 ~~~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~ 225 (419)
.+...++...++.+|++|+|++.+++.|.+++..|+.++++|..++ .++.++||+||||||||++|+++|.+++.+|+.
T Consensus 100 ~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp TGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred HHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 3344456678899999999999999999999999999999988876 467899999999999999999999999999999
Q ss_pred EeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc--CCCeE
Q 014743 226 VSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA--SNKIK 303 (419)
Q Consensus 226 v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~--~~~v~ 303 (419)
++++++...|+|..+..++.+|..++...|+||||||||.++..+... .+....+.+.+++..+++... ..+++
T Consensus 179 v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 179 ISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG----EHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp ECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred eeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc----cchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 999999999999999999999999999999999999999998776432 112234445556666655433 45799
Q ss_pred EEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 014743 304 VLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMNGASGAELKAVCTEAGMF 382 (419)
Q Consensus 304 VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~~t~G~sgadi~~l~~~A~~~ 382 (419)
||+|||+++.+++++++ ||+..++|+.|+.++|.+|++.++..... ..+.++..|+..++||++++|..||+.|...
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~ 332 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALG 332 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999988876443 2344688999999999999999999999999
Q ss_pred HHHh------------cCCCCCHHHHHHHHHHHHhhhhcchhhhHhhh
Q 014743 383 ALRE------------RRIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 418 (419)
Q Consensus 383 a~~~------------~~~~vt~eD~~~Al~~v~~~~~~~~~~~~~~~ 418 (419)
++++ ....|+.+||..|+..+.+......+...+-|
T Consensus 333 ~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~ 380 (389)
T 3vfd_A 333 PIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRW 380 (389)
T ss_dssp HHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHH
T ss_pred HHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9886 23579999999999988776655555444444
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=4.6e-32 Score=297.28 Aligned_cols=249 Identities=40% Similarity=0.747 Sum_probs=224.1
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
..++++|++|+|+++++++|.+.+..|+.+|++|.++++.++.++||+||||||||++|++||+.++.+++.++++++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 234 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 234 ~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
.+.|+.+..++.+|+.+....|+++||||+|.+++.+... ......+.+.+++..+++.....++++|+|||+++.
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~----~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC----CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc----cchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 9999999999999999999999999999999999876431 223344556677777777767788999999999999
Q ss_pred hhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Q 014743 314 LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRER------ 387 (419)
Q Consensus 314 ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~------ 387 (419)
+|+++.++|||+..+.++.|+.++|.+|++.+.+.+.+..++++..++..+.||+++|+..+|++|++.++++.
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~ 432 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccch
Confidence 99999999999999999999999999999999999998889999999999999999999999999999887653
Q ss_pred -----------CCCCCHHHHHHHHHHHHhh
Q 014743 388 -----------RIHVTQEDFEMAVAKVMKK 406 (419)
Q Consensus 388 -----------~~~vt~eD~~~Al~~v~~~ 406 (419)
...++.+||..++....+.
T Consensus 433 ~~~~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHHCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred hhhccchhhhhhhhhhhhhhhccccccCch
Confidence 2357778888888776543
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=5.1e-29 Score=242.68 Aligned_cols=178 Identities=17% Similarity=0.297 Sum_probs=137.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHH----HhhCCceEEecccccc
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEIDSI 266 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a----~~~~psVl~iDEiD~l 266 (419)
+.++|.++|||||||||||++|+++|++++.++++++++++.+.|+|..++.++++|..| +...|+||||||||++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 678899999999999999999999999999999999999999999999999999999998 5778999999999999
Q ss_pred cccccCCCCC-CCCHHHHHHHHHHHHHcc--------ccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHH
Q 014743 267 GSARMESGSG-NGDSEVQRTMLELLNQLD--------GFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEES 337 (419)
Q Consensus 267 ~~~r~~~~~~-~~~~~~~~~l~~lL~~l~--------~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~ 337 (419)
++.+.+.+.. .....+...|+++|+.+. ......+++||+|||+++.+|++++|+||||..|++ |+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHHH
Confidence 8865432111 122356677777776332 222456899999999999999999999999998874 69999
Q ss_pred HHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHH
Q 014743 338 RLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKA 374 (419)
Q Consensus 338 r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~ 374 (419)
|.+|++.++. ..++++..++..++||+++||..
T Consensus 190 r~~Il~~~~~----~~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFR----TDNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHG----GGCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhcc----CCCCCHHHHHHHhCCCCcccHHH
Confidence 9999997765 34678999999999999998864
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.93 E-value=4.5e-29 Score=257.44 Aligned_cols=206 Identities=20% Similarity=0.273 Sum_probs=143.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchh
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELV 232 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~ 232 (419)
.|...|++|+|++++++.+...+... ..|..+|+++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 35567899999999999998887542 33667889999999999999999999999998 999999999999
Q ss_pred hhhhchhHHHHHHHHHHH---HhhCCceEEecccccccccccCCCCCCCCHHHHHH---------------HHHHHHHcc
Q 014743 233 QKYIGEGSRMVRELFVMA---REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT---------------MLELLNQLD 294 (419)
Q Consensus 233 ~~~~g~~~~~i~~lf~~a---~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~---------------l~~lL~~l~ 294 (419)
++|+|+.+. ++++|..| +...|+||||||+|++++.|.+.+.++......+. ..++++.++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 89999999 88899999999999999988654322111111111 122444443
Q ss_pred --ccccCCCeEEEEEeCCcchhhHHhcCCCceeE--EEEcCCCC--HHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCC
Q 014743 295 --GFEASNKIKVLMATNRIDILDQALLRPGRIDR--KIEFPNPN--EESRLDILKIHSRRMNLMRGIDLKKIAEKMNGAS 368 (419)
Q Consensus 295 --~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~--~I~~~~P~--~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~s 368 (419)
+....+.++|++|||+++.+|++++|+||||+ .+++|.|+ .++|.+|++.++. .|+..++..|+|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 22333446666899999999999999999998 55667664 4778888765442 268889999999
Q ss_pred HHHHHHHHHH
Q 014743 369 GAELKAVCTE 378 (419)
Q Consensus 369 gadi~~l~~~ 378 (419)
|+||.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999954
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.92 E-value=7.6e-24 Score=206.01 Aligned_cols=223 Identities=20% Similarity=0.251 Sum_probs=169.7
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCC---CeEEEEcCCCChHHHHHHHHHhcc-------CCceEEEeCcc
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP---KGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE 230 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p---~~iLL~GPpGtGKT~LakalA~~~-------~~~~i~v~~s~ 230 (419)
.+|+|++++++.|.+.+..+. .+..+.++|+.++ .++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 479999999999999998754 4777777776543 469999999999999999999876 34899999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 310 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~ 310 (419)
+...++|.....+..+|..+ .++||||||+|.+++.+.+ ...+......|+++++.. ..+++||++||.
T Consensus 110 l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~---~~~~~~~~~~Ll~~l~~~-----~~~~~~i~~~~~ 178 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENN-----RDDLVVILAGYA 178 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC------CCTHHHHHHHHHHHHHC-----TTTCEEEEEECH
T ss_pred hhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc---ccccHHHHHHHHHHHhcC-----CCCEEEEEeCCh
Confidence 99999999888888888776 5789999999999866532 224566777777777643 457889999987
Q ss_pred cc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHH-------cCCCCHHHHHHHHH
Q 014743 311 ID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEK-------MNGASGAELKAVCT 377 (419)
Q Consensus 311 ~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~-------t~G~sgadi~~l~~ 377 (419)
.. .++|+|++ ||+..++|++|+.+++..|++.++...... ++..+..++.. ...-+++++.+++.
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 64 34688988 999999999999999999999998865432 11224445554 22335899999999
Q ss_pred HHHHHHHHh----cCCCCCHHHHH
Q 014743 378 EAGMFALRE----RRIHVTQEDFE 397 (419)
Q Consensus 378 ~A~~~a~~~----~~~~vt~eD~~ 397 (419)
.|...+..+ ....++.+|+.
T Consensus 257 ~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 257 RARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHh
Confidence 998766544 23445555543
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.89 E-value=1.9e-22 Score=200.88 Aligned_cols=222 Identities=19% Similarity=0.228 Sum_probs=162.0
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC--ceEEEeCcchhh
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGSELVQ 233 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~--~~i~v~~s~l~~ 233 (419)
|..+|++++|++.+++.+...+... ..|..++.++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 3445899999999988876555431 123455789999999999999999999998864 788888876544
Q ss_pred hhhch-------------------------------------------------hHHHHHHHHHHHHhh---------CC
Q 014743 234 KYIGE-------------------------------------------------GSRMVRELFVMAREH---------AP 255 (419)
Q Consensus 234 ~~~g~-------------------------------------------------~~~~i~~lf~~a~~~---------~p 255 (419)
.+.+. ....++..+..+... .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 33222 233445555544331 27
Q ss_pred ceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEe-----------CCcchhhHHhcCCCce
Q 014743 256 SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMAT-----------NRIDILDQALLRPGRI 324 (419)
Q Consensus 256 sVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tT-----------n~~~~ld~allr~gRf 324 (419)
+||||||+|.+ +.+.++.+..++.+ ....++++++. |.+..+++++++ ||
T Consensus 191 ~vl~IDEi~~l------------~~~~~~~L~~~le~-----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 191 GVLFIDEVHML------------DIESFSFLNRALES-----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp CEEEEESGGGS------------BHHHHHHHHHHTTC-----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred ceEEEhhcccc------------ChHHHHHHHHHhhC-----cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 89999999995 34555555555532 22344444333 247789999999 99
Q ss_pred eEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 014743 325 DRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 325 d~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v 403 (419)
.. +.|++|+.+++.+|++..+...... ++..+..++..+.+.+++++..+|+.|...|..++...|+.+|+..|+..+
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 76 7999999999999999887654321 223477888888856999999999999999988889999999999999875
Q ss_pred Hh
Q 014743 404 MK 405 (419)
Q Consensus 404 ~~ 405 (419)
..
T Consensus 331 ~~ 332 (368)
T 3uk6_A 331 LD 332 (368)
T ss_dssp BC
T ss_pred cC
Confidence 43
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=2.1e-21 Score=191.40 Aligned_cols=223 Identities=17% Similarity=0.170 Sum_probs=169.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
+.+++.+.+|++++|++.+++.+..++..... .-.++.++||+||||||||++|+++|+.++.+|+.++++.
T Consensus 19 ~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 19 YETSLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp ----CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 44567777999999999999999999876311 1245678999999999999999999999999999999876
Q ss_pred hhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc-------------c
Q 014743 231 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF-------------E 297 (419)
Q Consensus 231 l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~-------------~ 297 (419)
+. ..+.+...+.. ...+++|||||||.+ ....+..+...+++.... .
T Consensus 91 ~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l------------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 91 IE------KSGDLAAILTN--LSEGDILFIDEIHRL------------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp CC------SHHHHHHHHHT--CCTTCEEEEETGGGC------------CHHHHHHHHHHHHTSCC---------CCCCCC
T ss_pred cc------chhHHHHHHHh--ccCCCEEEEechhhc------------CHHHHHHHHHHHHhccchhhcccCccccceec
Confidence 53 12223333322 346789999999995 356677777777654210 0
Q ss_pred cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 014743 298 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVC 376 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~ 376 (419)
...++++|++||+...+++++++ ||+..+.|++|+.+++..|+..+....... ++..+..++..+.| +++.+.+++
T Consensus 151 ~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l 227 (338)
T 3pfi_A 151 DLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLL 227 (338)
T ss_dssp CCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHH
T ss_pred CCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHH
Confidence 01248999999999999999999 999999999999999999999888765532 22335667776665 678999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 014743 377 TEAGMFALRERRIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 377 ~~A~~~a~~~~~~~vt~eD~~~Al~~v~ 404 (419)
..+...+.......++.+++..++....
T Consensus 228 ~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 228 KRVRDFADVNDEEIITEKRANEALNSLG 255 (338)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHhC
Confidence 9998888777777899999998887643
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.88 E-value=1.5e-22 Score=196.13 Aligned_cols=242 Identities=23% Similarity=0.301 Sum_probs=165.1
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhc-CCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh-hhhch
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESL-GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIGE 238 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~-gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~-~~~g~ 238 (419)
++|+|++++++.+..++..++.++.+...+ +-..+.++||+||||||||++|+++|+.++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 579999999999999887643332211111 0135789999999999999999999999999999999999876 56665
Q ss_pred h-HHHHHHHHHHH-----HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc-----cccCCCeEEEEE
Q 014743 239 G-SRMVRELFVMA-----REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG-----FEASNKIKVLMA 307 (419)
Q Consensus 239 ~-~~~i~~lf~~a-----~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~-----~~~~~~v~VI~t 307 (419)
. ...++.++..+ ....++||||||+|.+.......+.......+++.++++++.... .....++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 3 34566666532 123478999999999976653211000011224556666653210 112347888888
Q ss_pred ----eCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHH----HH-------hhccc---CCCCCHHHHHHHcC----
Q 014743 308 ----TNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKI----HS-------RRMNL---MRGIDLKKIAEKMN---- 365 (419)
Q Consensus 308 ----Tn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~----~~-------~~~~~---~~~~dl~~la~~t~---- 365 (419)
++.+..+++++++ ||+..+.|++|+.+++.+|++. +. ..... .++..+..|+..+.
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4678899999998 9999999999999999999983 11 11111 12223556666652
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHH
Q 014743 366 ---GASGAELKAVCTEAGMFALRER------RIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 366 ---G~sgadi~~l~~~A~~~a~~~~------~~~vt~eD~~~Al~~v~ 404 (419)
+.+++.+..+|+.+...+..+. ...|+.+|+..|+....
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 5688999999998775543221 12499999999987653
No 35
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.87 E-value=1.4e-21 Score=213.28 Aligned_cols=198 Identities=22% Similarity=0.311 Sum_probs=148.0
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCC---C-CeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQ---P-KGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ 233 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~---p-~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~ 233 (419)
++|+|++.+++.+.+++... ..|... | .++||+||||||||++|+++|..+ +.+|++++|+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRA--------RAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------TTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHH--------HcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 67999999999999999763 223322 2 379999999999999999999986 67899999999988
Q ss_pred hhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc------cCCCeEEEEE
Q 014743 234 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE------ASNKIKVLMA 307 (419)
Q Consensus 234 ~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~------~~~~v~VI~t 307 (419)
.+... ...++..++..+++||||||||+ .++.+++.|+++|+...-.. ...+++||+|
T Consensus 563 ~~~~~----~~~l~~~~~~~~~~vl~lDEi~~------------~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 563 KHSTS----GGQLTEKVRRKPYSVVLLDAIEK------------AHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp SCCCC-------CHHHHHHCSSSEEEEECGGG------------SCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ccccc----cchhhHHHHhCCCeEEEEeCccc------------cCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 77655 22455666777889999999998 56789999999998743221 2347899999
Q ss_pred eCCcch------------hhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc-------cCCCCC---HHHHHHH--
Q 014743 308 TNRIDI------------LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN-------LMRGID---LKKIAEK-- 363 (419)
Q Consensus 308 Tn~~~~------------ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~-------~~~~~d---l~~la~~-- 363 (419)
||.+.. ++|+|++ |||..|.|++|+.+++..|++.++..+. ..-.++ +..|+..
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 997543 7888888 9999999999999999999988766531 111122 4445543
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 014743 364 MNGASGAELKAVCTEAGMFAL 384 (419)
Q Consensus 364 t~G~sgadi~~l~~~A~~~a~ 384 (419)
...+..++|+++++++...++
T Consensus 705 ~~~~~~R~L~~~i~~~v~~~l 725 (758)
T 3pxi_A 705 DLEYGARPLRRAIQKHVEDRL 725 (758)
T ss_dssp CTTTTTTTHHHHHHHHTHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHH
Confidence 235667889988887765554
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.86 E-value=1.4e-22 Score=213.09 Aligned_cols=225 Identities=24% Similarity=0.368 Sum_probs=149.8
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh-----
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ----- 233 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~----- 233 (419)
.+++++|++++++.+.+.+.....+ +.+ ++..++|+||||||||++++++|+.++.++..++++.+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 3478999999999998877653211 112 5678999999999999999999999999999998876543
Q ss_pred ----hhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc--cc--------cC
Q 014743 234 ----KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG--FE--------AS 299 (419)
Q Consensus 234 ----~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~--~~--------~~ 299 (419)
.|+|...+.+.+.|..+....| ||||||||++.+.+.. +.+..++++|+.... +. ..
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 6778888888888888776666 9999999998754321 133445555532211 10 11
Q ss_pred CCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhh-----cccCC---CCC---HHHHHHHcCC-C
Q 014743 300 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR-----MNLMR---GID---LKKIAEKMNG-A 367 (419)
Q Consensus 300 ~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~-----~~~~~---~~d---l~~la~~t~G-~ 367 (419)
.+++||+|||+++.++++|++ ||+ .|.|++|+.+++..|++.++.. ..+.. .++ +..++....+ .
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 578999999999999999999 995 7999999999999999887622 22211 122 4444554443 2
Q ss_pred CH----HHHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHH
Q 014743 368 SG----AELKAVCTEAGMFALRE--RRIHVTQEDFEMAVAK 402 (419)
Q Consensus 368 sg----adi~~l~~~A~~~a~~~--~~~~vt~eD~~~Al~~ 402 (419)
.. +.|..+|+.|+..+++. ....|+.+|+..++..
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 33 45556666666655544 3457999999988764
No 37
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.86 E-value=7.1e-23 Score=209.02 Aligned_cols=170 Identities=21% Similarity=0.287 Sum_probs=87.2
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCC-CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh-hhhch
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIA-QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIGE 238 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~-~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~-~~~g~ 238 (419)
++|+|++++++.|..++..+.+++.++..++.. +++++||+||||||||++|+++|..++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 589999999999999998877777666555443 5789999999999999999999999999999999999988 59995
Q ss_pred -hHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEE-eCCcchhhH
Q 014743 239 -GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA-TNRIDILDQ 316 (419)
Q Consensus 239 -~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~t-Tn~~~~ld~ 316 (419)
.+..++.+|..++.. +++||++.+.... ......+++.+++..||++....++ +++ ||+++.+|+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA-------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc-------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 789999999998776 4589998865332 1223356778888888888665554 455 999999999
Q ss_pred HhcCCCceeEEEEcCCCCHH-HHHHHHH
Q 014743 317 ALLRPGRIDRKIEFPNPNEE-SRLDILK 343 (419)
Q Consensus 317 allr~gRfd~~I~~~~P~~~-~r~~Il~ 343 (419)
+|+|+||||+.|+|+.|+.. .|.+|+.
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ----------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 99999999999999999987 7888763
No 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.85 E-value=1.4e-20 Score=183.83 Aligned_cols=219 Identities=19% Similarity=0.242 Sum_probs=165.7
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
.+..+.+|++++|.+.+++.+...+.... . +-..+.++||+||||||||++|+++++.++.+++.++++.+.
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 75 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE 75 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC
Confidence 35667789999999999999999886521 1 013567899999999999999999999999999999987653
Q ss_pred hhhhchhHHHHHHHHHHHHh--hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc-----c--------
Q 014743 233 QKYIGEGSRMVRELFVMARE--HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF-----E-------- 297 (419)
Q Consensus 233 ~~~~g~~~~~i~~lf~~a~~--~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~-----~-------- 297 (419)
. . ..++..... ..+.+|||||+|.+ ....+..+..+++..... .
T Consensus 76 ~------~---~~l~~~l~~~~~~~~~l~lDEi~~l------------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 76 K------P---GDLAAILANSLEEGDILFIDEIHRL------------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp S------H---HHHHHHHTTTCCTTCEEEETTTTSC------------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred C------h---HHHHHHHHHhccCCCEEEEECCccc------------ccchHHHHHHHHHhhhhHHhcccccccccccc
Confidence 2 1 123332222 46789999999985 345667777777764210 0
Q ss_pred cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 014743 298 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVC 376 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~ 376 (419)
...++.+|++||.+..+++.+.+ ||+..+.|++|+.+++..++..++...+.. ++..+..++..+.| +++.+.+++
T Consensus 135 ~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l 211 (324)
T 1hqc_A 135 ELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLF 211 (324)
T ss_dssp ECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHH
T ss_pred CCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHH
Confidence 11368899999999999999988 999899999999999999999887755432 22236778888876 668999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 014743 377 TEAGMFALRERRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 377 ~~A~~~a~~~~~~~vt~eD~~~Al~~v 403 (419)
..+...+.......++.+|+..++...
T Consensus 212 ~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 212 RRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 888777755566789999998887764
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.85 E-value=7.1e-21 Score=182.39 Aligned_cols=223 Identities=20% Similarity=0.243 Sum_probs=149.9
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh-hhhhchh
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV-QKYIGEG 239 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~-~~~~g~~ 239 (419)
..++|....++.+...... ....+...+..++.++||+||||||||++|+++|..++.+++.+++++.. ....+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 5678888887777664211 01122333456788999999999999999999999999999999887532 2122233
Q ss_pred HHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc-cCCCeEEEEEeCCcchhhH-H
Q 014743 240 SRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-ASNKIKVLMATNRIDILDQ-A 317 (419)
Q Consensus 240 ~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~-~~~~v~VI~tTn~~~~ld~-a 317 (419)
...++.+|..+....++||||||+|.+++.+... ......+.+.+..++ ++.. ...+++||+|||.++.+++ .
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~l~~L~~~~---~~~~~~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG--PRFSNLVLQALLVLL---KKAPPQGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT--TBCCHHHHHHHHHHT---TCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC--hhHHHHHHHHHHHHh---cCccCCCCCEEEEEecCChhhcchhh
Confidence 3567889998888889999999999997765321 122334444444433 3322 2346889999999999998 5
Q ss_pred hcCCCceeEEEEcCCCCH-HHHHHHHHHHHhhcccCCCCCHHHHHHHcCCC----CHHHHHHHHHHHHHHHHHhcCCCCC
Q 014743 318 LLRPGRIDRKIEFPNPNE-ESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA----SGAELKAVCTEAGMFALRERRIHVT 392 (419)
Q Consensus 318 llr~gRfd~~I~~~~P~~-~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~----sgadi~~l~~~A~~~a~~~~~~~vt 392 (419)
+.+ ||+..+.+|+++. ++...++.. ...+ .+.++..++..+.|| +.+++.+++..|...+ ....
T Consensus 185 l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~~ 253 (272)
T 1d2n_A 185 MLN--AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PEYR 253 (272)
T ss_dssp CTT--TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GGGH
T ss_pred hhc--ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hHHH
Confidence 555 9999999987765 444444432 2222 345588899999997 5677777777664322 2234
Q ss_pred HHHHHHHHHH
Q 014743 393 QEDFEMAVAK 402 (419)
Q Consensus 393 ~eD~~~Al~~ 402 (419)
.++|..++..
T Consensus 254 ~~~~~~~l~~ 263 (272)
T 1d2n_A 254 VRKFLALLRE 263 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 40
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.85 E-value=3.7e-21 Score=212.48 Aligned_cols=202 Identities=22% Similarity=0.321 Sum_probs=148.5
Q ss_pred cccccCcHHHHHHHHHHhhcccCChhHHhhcCCC----CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh
Q 014743 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIA----QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV 232 (419)
Q Consensus 160 ~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~----~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~ 232 (419)
+++|+|++++++.+...|... ..|+. |..++||+||||||||++|++|+..+ +.+|+.++|+++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 368999999999999998753 22322 23589999999999999999999987 7889999999875
Q ss_pred hh------------hhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC-
Q 014743 233 QK------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS- 299 (419)
Q Consensus 233 ~~------------~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~- 299 (419)
.. |+|... .+.++...+..+++||||||||. .++.+++.|+++|+...-.+..
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~------------l~~~~~~~Ll~~l~~~~~~~~~g 694 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEK------------AHPDVFNILLQILDDGRLTDSHG 694 (854)
T ss_dssp SSGGGGGC----------------CHHHHHHHCSSEEEEESSGGG------------SCHHHHHHHHHHHTTTEECCSSS
T ss_pred chhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccc------------cCHHHHHHHHHHhccCceECCCC
Confidence 43 233332 13566666777789999999998 5678999999999865322221
Q ss_pred -----CCeEEEEEeCCc--------------------------chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhh
Q 014743 300 -----NKIKVLMATNRI--------------------------DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR 348 (419)
Q Consensus 300 -----~~v~VI~tTn~~--------------------------~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~ 348 (419)
.+++||+|||.+ ..+.|+|++ |||..+.|++|+.+++..|++.++..
T Consensus 695 ~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 695 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred CEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 378899999973 134577777 99999999999999999999887764
Q ss_pred ccc----------CCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHH
Q 014743 349 MNL----------MRGIDLKKIAEKMN--GASGAELKAVCTEAGMFALR 385 (419)
Q Consensus 349 ~~~----------~~~~dl~~la~~t~--G~sgadi~~l~~~A~~~a~~ 385 (419)
+.. .++.-+..|+.... .++.++|+++++++...++.
T Consensus 773 ~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~ 821 (854)
T 1qvr_A 773 LRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 821 (854)
T ss_dssp HHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHH
T ss_pred HHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 211 11122556677655 67889999999988776653
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.85 E-value=1.3e-19 Score=165.36 Aligned_cols=206 Identities=22% Similarity=0.241 Sum_probs=152.6
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceEE
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR 225 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~ 225 (419)
+.++.++..|++++|.+++++.+.+++... .+.+++|+||||||||++++++++.+ ...++.
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 456678888999999999999999988652 23459999999999999999999865 456788
Q ss_pred EeCcchhhhhhchhHHHHHHHHHHHH------hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC
Q 014743 226 VSGSELVQKYIGEGSRMVRELFVMAR------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS 299 (419)
Q Consensus 226 v~~s~l~~~~~g~~~~~i~~lf~~a~------~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~ 299 (419)
++++..... ..+...+.... ...+.||+|||+|.+ .....+.+..+++.. .
T Consensus 74 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l------------~~~~~~~l~~~l~~~-----~ 130 (226)
T 2chg_A 74 MNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL------------TADAQAALRRTMEMY-----S 130 (226)
T ss_dssp EETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS------------CHHHHHHHHHHHHHT-----T
T ss_pred eccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhc------------CHHHHHHHHHHHHhc-----C
Confidence 887654321 12222222222 246789999999995 234556677776653 3
Q ss_pred CCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHH
Q 014743 300 NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTE 378 (419)
Q Consensus 300 ~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~ 378 (419)
.++.+|++||.+..+++.+.+ ||. .+.|++|+.++..+++...+...+.. ++..+..++..+.| +++.+.+++..
T Consensus 131 ~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~ 206 (226)
T 2chg_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQG 206 (226)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 578899999999999999998 887 89999999999999998877654332 22336677887776 66666667666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH
Q 014743 379 AGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 379 A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
+...+ ..|+.+|+..++.
T Consensus 207 ~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 207 AAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHTC-----SCBCHHHHHHHHH
T ss_pred HHhcC-----ceecHHHHHHHhc
Confidence 65443 5899999999875
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.84 E-value=1.8e-20 Score=187.12 Aligned_cols=236 Identities=22% Similarity=0.323 Sum_probs=158.3
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhh-cCC-CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh-hhc
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFES-LGI-AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIG 237 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~-~gi-~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~-~~g 237 (419)
+.|+|++.+++.|..++............ .+. .++.++||+||||||||++|+++|..++.+|+.++++++... |+|
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g 94 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG 94 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccc
Confidence 35899999999999998543221110000 011 257889999999999999999999999999999999998854 888
Q ss_pred hh-HHHHHHHHHHH----HhhCCceEEecccccccccccCCCCCCCCH---HHHHHHHHHHHHcc-------c-------
Q 014743 238 EG-SRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGSGNGDS---EVQRTMLELLNQLD-------G------- 295 (419)
Q Consensus 238 ~~-~~~i~~lf~~a----~~~~psVl~iDEiD~l~~~r~~~~~~~~~~---~~~~~l~~lL~~l~-------~------- 295 (419)
.. .+.++.+|..+ ....|+||||||||++.+.+.+... +.+. .+++.|+++|+... +
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~-~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~ 173 (363)
T 3hws_A 95 EDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSI-TRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 173 (363)
T ss_dssp HHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC----------------
T ss_pred ccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccccc-ccccchHHHHHHHHHHhcCceeeccCccccccCCCc
Confidence 76 56677787765 4556889999999999877644221 1111 25666777666110 0
Q ss_pred --cccCCCeEEEEEeCCc----------------------------------------ch-----hhHHhcCCCceeEEE
Q 014743 296 --FEASNKIKVLMATNRI----------------------------------------DI-----LDQALLRPGRIDRKI 328 (419)
Q Consensus 296 --~~~~~~v~VI~tTn~~----------------------------------------~~-----ld~allr~gRfd~~I 328 (419)
+-...|+++|+++|.. +. ++|+|++ ||+.++
T Consensus 174 ~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~ 251 (363)
T 3hws_A 174 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVA 251 (363)
T ss_dssp CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEE
T ss_pred eEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeee
Confidence 0012355666666642 11 6788887 999999
Q ss_pred EcCCCCHHHHHHHHHH----HHhhc-------ccC---CCCCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhcC----
Q 014743 329 EFPNPNEESRLDILKI----HSRRM-------NLM---RGIDLKKIAE--KMNGASGAELKAVCTEAGMFALRERR---- 388 (419)
Q Consensus 329 ~~~~P~~~~r~~Il~~----~~~~~-------~~~---~~~dl~~la~--~t~G~sgadi~~l~~~A~~~a~~~~~---- 388 (419)
.|++|+.+++.+|+.. +++.+ ... .+.-+..|+. ....+.+++|++++.++...++.+..
T Consensus 252 ~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~ 331 (363)
T 3hws_A 252 TLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED 331 (363)
T ss_dssp ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCC
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccC
Confidence 9999999999999985 22211 111 1112455664 33456779999999998888776532
Q ss_pred ---CCCCHHHHHHH
Q 014743 389 ---IHVTQEDFEMA 399 (419)
Q Consensus 389 ---~~vt~eD~~~A 399 (419)
..|+.++++..
T Consensus 332 ~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 332 VEKVVIDESVIDGQ 345 (363)
T ss_dssp SEEEECHHHHTTCC
T ss_pred CceeEEcHHHHhCc
Confidence 23666655543
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.84 E-value=8.7e-20 Score=181.50 Aligned_cols=223 Identities=22% Similarity=0.244 Sum_probs=163.5
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---------CCceEEEeCcch
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGSEL 231 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---------~~~~i~v~~s~l 231 (419)
++++|.+++++.+..++...+. ...+.+++|+||||||||++++++++.+ +..++.++|...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 7899999999999998865322 1457789999999999999999999877 778999998754
Q ss_pred hhhh----------------hch-hHHHHHHHHHHHHhh-CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHc
Q 014743 232 VQKY----------------IGE-GSRMVRELFVMAREH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 293 (419)
Q Consensus 232 ~~~~----------------~g~-~~~~i~~lf~~a~~~-~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l 293 (419)
.+.+ .|. ....+..++...... .|.||||||+|.+...+ ..+..+..+++.+
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRITRIN 159 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHhhch
Confidence 3211 111 122244455444333 37899999999975321 1345677777766
Q ss_pred cccccCCCeEEEEEeCCc---chhhHHhcCCCceeE-EEEcCCCCHHHHHHHHHHHHhh----cccCCCCCHHHHHHHcC
Q 014743 294 DGFEASNKIKVLMATNRI---DILDQALLRPGRIDR-KIEFPNPNEESRLDILKIHSRR----MNLMRGIDLKKIAEKMN 365 (419)
Q Consensus 294 ~~~~~~~~v~VI~tTn~~---~~ld~allr~gRfd~-~I~~~~P~~~~r~~Il~~~~~~----~~~~~~~dl~~la~~t~ 365 (419)
.......++.+|++||.+ +.+++.+.+ ||.. .+.|++|+.+++.+|+...+.. ..+ .+..+..++..+.
T Consensus 160 ~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 160 QELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL-DPDVVPLCAALAA 236 (387)
T ss_dssp GCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSSHHHHHHHHHH
T ss_pred hhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHH
Confidence 433215678999999988 678899988 8874 8999999999999999988764 122 2233667777776
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 014743 366 ---GASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 406 (419)
Q Consensus 366 ---G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~ 406 (419)
| .++.+..+|+.|...|..++...|+.+|+..|+..+...
T Consensus 237 ~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 237 REHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp SSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred Hhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 6 677888999999988887788899999999999887543
No 44
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.84 E-value=4.1e-20 Score=201.56 Aligned_cols=200 Identities=20% Similarity=0.289 Sum_probs=153.0
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCC----CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh--
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIA----QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-- 234 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~----~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~-- 234 (419)
.+|+|++++++.+..++... ..|+. |..++||+||||||||++|+++|..++.++++++|+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 46899999999999988653 33443 33479999999999999999999999999999999998653
Q ss_pred ----------hhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc------
Q 014743 235 ----------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA------ 298 (419)
Q Consensus 235 ----------~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~------ 298 (419)
|+|..++. .++..++..+++||||||||+ .++++++.|+++++...-.+.
T Consensus 530 ~~~l~g~~~g~~g~~~~~--~l~~~~~~~~~~vl~lDEi~~------------~~~~~~~~Ll~~le~~~~~~~~g~~~~ 595 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQGG--LLTDAVIKHPHAVLLLDEIEK------------AHPDVFNILLQVMDNGTLTDNNGRKAD 595 (758)
T ss_dssp CSSSCCCCSCSHHHHHTT--HHHHHHHHCSSEEEEEETGGG------------SCHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred HhhhcCCCCCCcCccccc--hHHHHHHhCCCcEEEEeCccc------------cCHHHHHHHHHHhcCcEEEcCCCCEEe
Confidence 55544333 456667777889999999998 567899999999987532221
Q ss_pred CCCeEEEEEeCCcc-------------------------hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc---
Q 014743 299 SNKIKVLMATNRID-------------------------ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN--- 350 (419)
Q Consensus 299 ~~~v~VI~tTn~~~-------------------------~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~--- 350 (419)
..+++||+|||.+. .++|+|++ |||.+|.|++|+.+++..|++.++..+.
T Consensus 596 ~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 596 FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp CTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 14789999999854 67889998 9999999999999999999998876431
Q ss_pred ------c-CCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Q 014743 351 ------L-MRGIDLKKIAEKM--NGASGAELKAVCTEAGMFAL 384 (419)
Q Consensus 351 ------~-~~~~dl~~la~~t--~G~sgadi~~l~~~A~~~a~ 384 (419)
+ .++.-+..|+... ..++.+++..+++++...++
T Consensus 674 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 674 DQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp HHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHH
T ss_pred HHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHH
Confidence 1 1112245566543 35668899999888776543
No 45
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.83 E-value=9.3e-20 Score=177.07 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=146.7
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCC----CCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGI----AQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ 233 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi----~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~ 233 (419)
++++|++.+++.+...+... ..++ .+...+||+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~--------~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHH--------HHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred hhcCCHHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 57899999999999998753 1122 233579999999999999999999977 55699999987643
Q ss_pred h-----hhchhHHH-----HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc-----
Q 014743 234 K-----YIGEGSRM-----VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA----- 298 (419)
Q Consensus 234 ~-----~~g~~~~~-----i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~----- 298 (419)
. ++|...+. ...+.......+++||||||+|.+ ++..++.++++++.......
T Consensus 89 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l------------~~~~~~~Ll~~le~~~~~~~~~~~~ 156 (311)
T 4fcw_A 89 KHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA------------HPDVFNILLQMLDDGRLTDSHGRTV 156 (311)
T ss_dssp TTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS------------CHHHHHHHHHHHHHSEEECTTSCEE
T ss_pred cccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc------------CHHHHHHHHHHHhcCEEEcCCCCEE
Confidence 2 22221100 023444455566789999999994 56788889888886532211
Q ss_pred -CCCeEEEEEeCC--------------------------cchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc-
Q 014743 299 -SNKIKVLMATNR--------------------------IDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN- 350 (419)
Q Consensus 299 -~~~v~VI~tTn~--------------------------~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~- 350 (419)
-.++++|+|||. ...++++|++ ||+..+.|++|+.+++..|++.++....
T Consensus 157 ~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 157 DFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp ECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred ECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 137889999998 5578889988 9999999999999999999998765531
Q ss_pred ------cC---CCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHH
Q 014743 351 ------LM---RGIDLKKIAEKMN--GASGAELKAVCTEAGMFAL 384 (419)
Q Consensus 351 ------~~---~~~dl~~la~~t~--G~sgadi~~l~~~A~~~a~ 384 (419)
.. ++..+..|+.... ..++++|.++++++...+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 235 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred HHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 11 1222556676655 5688999999998877654
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.82 E-value=1.1e-19 Score=178.17 Aligned_cols=207 Identities=21% Similarity=0.271 Sum_probs=144.9
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCc
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s 229 (419)
.+.+++.+.+|++++|++++++.+.+++... ..|..+|++||||||||++++++|+.++..++.++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 4677888999999999999999999998742 4567789999999999999999999999999999987
Q ss_pred chhhhhhchhHHHHHHHHHHHHhh-----CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEE
Q 014743 230 ELVQKYIGEGSRMVRELFVMAREH-----APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 304 (419)
Q Consensus 230 ~l~~~~~g~~~~~i~~lf~~a~~~-----~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~V 304 (419)
+.. ...++..+...... .+.||||||+|.+.+ .+.++.+..+++.. ..++.+
T Consensus 83 ~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~~~~~L~~~le~~-----~~~~~i 139 (324)
T 3u61_B 83 DCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AESQRHLRSFMEAY-----SSNCSI 139 (324)
T ss_dssp TCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HHHHHHHHHHHHHH-----GGGCEE
T ss_pred ccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HHHHHHHHHHHHhC-----CCCcEE
Confidence 642 22344444333222 578999999999731 34566677777654 346889
Q ss_pred EEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhc-------cc-CCC-CCHHHHHHHcCCCCHHHHHHH
Q 014743 305 LMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM-------NL-MRG-IDLKKIAEKMNGASGAELKAV 375 (419)
Q Consensus 305 I~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~-------~~-~~~-~dl~~la~~t~G~sgadi~~l 375 (419)
|++||.+..+++++++ ||. .+.|++|+.++|.+|++.....+ ++ .++ ..+..++..+.|.. +++.+.
T Consensus 140 I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~-R~a~~~ 215 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF-RKTIGE 215 (324)
T ss_dssp EEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT-THHHHH
T ss_pred EEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH-HHHHHH
Confidence 9999999999999999 885 79999999999888766543321 11 112 33667888877733 344445
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHH
Q 014743 376 CTEAGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 376 ~~~A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
++.++ ....++.+++..++.
T Consensus 216 L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 216 LDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHG------GGTCBCC--------
T ss_pred HHHHh------ccCCCCHHHHHHHhC
Confidence 54443 223466666665443
No 47
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.82 E-value=7.2e-19 Score=162.15 Aligned_cols=207 Identities=17% Similarity=0.233 Sum_probs=150.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc--------
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 222 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-------- 222 (419)
+.++.++..|++++|.+..++.+.+++... ..+..++|+||||||||++++++++.+...
T Consensus 13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 13 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp HHHHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HhhccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 455677788899999999999999988652 345689999999999999999999866432
Q ss_pred ----------------eEEEeCcchhhhhhchhHHHHHHHHHHHH----hhCCceEEecccccccccccCCCCCCCCHHH
Q 014743 223 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 223 ----------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
++.++... ......++.++..+. ...|.+|+|||+|.+ +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l------------~~~~ 142 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML------------SRHS 142 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS------------CHHH
T ss_pred cccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc------------cHHH
Confidence 22222211 011223445554432 234789999999985 3445
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHH
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIA 361 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la 361 (419)
.+.+..++.. ...++.+|++||.+..+++.+.+ |+ ..+.|++|+.++..+++..++...+.. ++..+..++
T Consensus 143 ~~~l~~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 143 FNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp HHHHHHHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5556666543 24578999999999999999988 65 689999999999999999887654321 223367889
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
..+.| +++.+..+++.|... ....|+.+|++.++
T Consensus 215 ~~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 215 RAAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 99988 888999999887533 23479999998875
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.81 E-value=9.6e-19 Score=172.51 Aligned_cols=224 Identities=16% Similarity=0.220 Sum_probs=148.1
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC-------c----
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------T---- 222 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~-------~---- 222 (419)
..++.+|++|+|++.+++.+......+ .+.++||+||||||||++|++++..++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 446778999999999877765544331 2346999999999999999999997752 1
Q ss_pred ----------------------eEEEeCcchhhhhhchhHHHHHHHHHHH---------HhhCCceEEeccccccccccc
Q 014743 223 ----------------------FIRVSGSELVQKYIGEGSRMVRELFVMA---------REHAPSIIFMDEIDSIGSARM 271 (419)
Q Consensus 223 ----------------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a---------~~~~psVl~iDEiD~l~~~r~ 271 (419)
++.+..........|... +...+... ....+.||||||+|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l----- 156 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLL----- 156 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-----
T ss_pred ccccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhC-----
Confidence 111111110111122100 01111111 1124679999999995
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccc-cc-------cCCCeEEEEEeCCcc-hhhHHhcCCCceeEEEEcCCC-CHHHHHHH
Q 014743 272 ESGSGNGDSEVQRTMLELLNQLDG-FE-------ASNKIKVLMATNRID-ILDQALLRPGRIDRKIEFPNP-NEESRLDI 341 (419)
Q Consensus 272 ~~~~~~~~~~~~~~l~~lL~~l~~-~~-------~~~~v~VI~tTn~~~-~ld~allr~gRfd~~I~~~~P-~~~~r~~I 341 (419)
....+..+.++++.... +. ...++++|+|||..+ .++++|++ ||+..+.+++| +.+.+.+|
T Consensus 157 -------~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 157 -------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp -------CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHH
T ss_pred -------CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 35567778888776310 11 123788999999754 89999999 99998999999 67788788
Q ss_pred HHHHHh-------------------------------hcccCCCCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhc
Q 014743 342 LKIHSR-------------------------------RMNLMRGIDLKKIAEKMNG---ASGAELKAVCTEAGMFALRER 387 (419)
Q Consensus 342 l~~~~~-------------------------------~~~~~~~~dl~~la~~t~G---~sgadi~~l~~~A~~~a~~~~ 387 (419)
++..+. .+.+ ++..+..|+....+ -+.+.+..+++.|...|..++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 866311 1111 11123444444432 267999999999999998888
Q ss_pred CCCCCHHHHHHHHHHHHhhh
Q 014743 388 RIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 388 ~~~vt~eD~~~Al~~v~~~~ 407 (419)
+..|+.+|+..|+..++...
T Consensus 307 ~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 307 ATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp CSBCCHHHHHHHHHHHHGGG
T ss_pred CCcCCHHHHHHHHHHHHhhc
Confidence 88899999999999988654
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.81 E-value=6.7e-19 Score=180.62 Aligned_cols=219 Identities=17% Similarity=0.279 Sum_probs=156.4
Q ss_pred CCCCccccc-CcH--HHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEe
Q 014743 156 PDSTYDMIG-GLD--QQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVS 227 (419)
Q Consensus 156 p~~~~~~I~-G~~--~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~ 227 (419)
|..+|++++ |.. .+...+......| + . +.+++||||||||||+|++++++.+ +..++.++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 445788876 543 3444445444432 1 2 6789999999999999999999977 78899999
Q ss_pred CcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEE
Q 014743 228 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 307 (419)
Q Consensus 228 ~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~t 307 (419)
+.++...+.+.........|.......|+||||||++.+... ...+..+..+++.+. . .+..||++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~----------~~~q~~l~~~l~~l~---~-~~~~iIit 233 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK----------TGVQTELFHTFNELH---D-SGKQIVIC 233 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC----------HHHHHHHHHHHHHHH---T-TTCEEEEE
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC----------hHHHHHHHHHHHHHH---H-CCCeEEEE
Confidence 998876665543332222333333337899999999997532 244556666666542 2 23445555
Q ss_pred eCC-cch---hhHHhcCCCcee--EEEEcCCCCHHHHHHHHHHHHhhcc--cCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Q 014743 308 TNR-IDI---LDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMN--LMRGIDLKKIAEKMNGASGAELKAVCTEA 379 (419)
Q Consensus 308 Tn~-~~~---ld~allr~gRfd--~~I~~~~P~~~~r~~Il~~~~~~~~--~~~~~dl~~la~~t~G~sgadi~~l~~~A 379 (419)
|++ +.. +++.+++ ||. ..+.+++|+.++|.+|++..+...+ +..+ .+..|+..+.| +.+++..++..+
T Consensus 234 t~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~ 309 (440)
T 2z4s_A 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_dssp ESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHH
Confidence 655 554 7899998 886 7899999999999999998876433 3333 37788888876 889999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 380 GMFALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 380 ~~~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
...|...+ ..|+.+++..++....+
T Consensus 310 ~~~a~~~~-~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 310 LVYKETTG-KEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HHHHHHSS-SCCCHHHHHHHTSTTTC
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHHhh
Confidence 88886544 47999999999988763
No 50
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.81 E-value=2.3e-19 Score=184.28 Aligned_cols=209 Identities=22% Similarity=0.291 Sum_probs=153.2
Q ss_pred cccCCCCCcccccCcHHHH---HHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeC
Q 014743 152 VEKVPDSTYDMIGGLDQQI---KEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~---~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~ 228 (419)
.+...+.+|++++|+++++ +.|...+... ...++||+||||||||++|++||+.++.+|+.+++
T Consensus 17 a~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 17 AARMRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISA 83 (447)
T ss_dssp HHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET
T ss_pred HHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 3456778899999999999 7888888652 33789999999999999999999999999999987
Q ss_pred cchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEE
Q 014743 229 SELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 304 (419)
Q Consensus 229 s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~V 304 (419)
... +...++.++..+.. ..+.||||||||.+... .+..|+..++. +.+++
T Consensus 84 ~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~-------~~v~l 137 (447)
T 3pvs_A 84 VTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIED-------GTITF 137 (447)
T ss_dssp TTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT-------TSCEE
T ss_pred ccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhc-------CceEE
Confidence 542 23345566665553 46789999999997321 23345555542 45777
Q ss_pred EEEe--CCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcc-------c-CCCCCHHHHHHHcCCCCHHHHHH
Q 014743 305 LMAT--NRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN-------L-MRGIDLKKIAEKMNGASGAELKA 374 (419)
Q Consensus 305 I~tT--n~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~-------~-~~~~dl~~la~~t~G~sgadi~~ 374 (419)
|++| |....+++++++ |+. ++.|++|+.+++..+++..+.... + .++..+..|+..+.| +.+.+.+
T Consensus 138 I~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln 213 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALN 213 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHH
T ss_pred EecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHH
Confidence 7776 444578999999 886 788999999999999998876521 1 122236678888776 7788888
Q ss_pred HHHHHHHHHHHh--cCCCCCHHHHHHHHHHH
Q 014743 375 VCTEAGMFALRE--RRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 375 l~~~A~~~a~~~--~~~~vt~eD~~~Al~~v 403 (419)
++..+...+... +...||.+|+..++.+.
T Consensus 214 ~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 214 TLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 888887766322 34579999999887654
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.81 E-value=9.8e-19 Score=172.50 Aligned_cols=213 Identities=21% Similarity=0.230 Sum_probs=153.1
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC------Cc
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CT 222 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~------~~ 222 (419)
..+.+++++.+|++++|++++++.+..++... .+.++||+||||||||++++++++.+. ..
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~ 91 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR 91 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 45677888999999999999999999988652 223499999999999999999998753 45
Q ss_pred eEEEeCcchhhhhhchhHHHHHHHHHHHH----------------hhCCceEEecccccccccccCCCCCCCCHHHHHHH
Q 014743 223 FIRVSGSELVQKYIGEGSRMVRELFVMAR----------------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 286 (419)
Q Consensus 223 ~i~v~~s~l~~~~~g~~~~~i~~lf~~a~----------------~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l 286 (419)
++.+++++... ...+++.+.... ...+.||||||+|.+ ....++.+
T Consensus 92 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l------------~~~~~~~L 153 (353)
T 1sxj_D 92 ILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM------------TADAQSAL 153 (353)
T ss_dssp EEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS------------CHHHHHHH
T ss_pred eEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc------------CHHHHHHH
Confidence 78888776421 111222221111 123569999999995 34456677
Q ss_pred HHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc-CCCCCHHHHHHHcC
Q 014743 287 LELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL-MRGIDLKKIAEKMN 365 (419)
Q Consensus 287 ~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~-~~~~dl~~la~~t~ 365 (419)
..++++. ..++.+|++||.+..+++.+.+ |+. .+.|++|+.++...++...+...++ .++..+..++..+.
T Consensus 154 l~~le~~-----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 154 RRTMETY-----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISA 225 (353)
T ss_dssp HHHHHHT-----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTS
T ss_pred HHHHHhc-----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 7777664 3467788899999999999998 886 7899999999999999887754332 12234678888888
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHH
Q 014743 366 GASGAELKAVCTEAGMFALRERRI-HVTQEDFEMAVA 401 (419)
Q Consensus 366 G~sgadi~~l~~~A~~~a~~~~~~-~vt~eD~~~Al~ 401 (419)
| +.+.+.++++.+...+-+.... .|+.+|+..++.
T Consensus 226 G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 226 G-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp S-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 7 4666666776666655433322 789999887654
No 52
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.81 E-value=1.1e-19 Score=162.03 Aligned_cols=162 Identities=23% Similarity=0.363 Sum_probs=123.7
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCce
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTF 223 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~ 223 (419)
..++..|++++|.+++++.+.+.+.. ..+.+++|+||||||||++++++++.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 44566789999999999999988754 356789999999999999999999875 6788
Q ss_pred EEEeCcchh--hhhhchhHHHHHHHHHHHH-hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCC
Q 014743 224 IRVSGSELV--QKYIGEGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 300 (419)
Q Consensus 224 i~v~~s~l~--~~~~g~~~~~i~~lf~~a~-~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~ 300 (419)
+.++++.+. ..+.+.....++.++..+. ...|.||+|||+|.+.+.+... ......+.+..++. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~----~~~~~~~~l~~~~~-------~~ 150 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD----GAMDAGNMLKPALA-------RG 150 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------CCCCHHHHHHHHH-------TT
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc----chHHHHHHHHHhhc-------cC
Confidence 899988776 4556666777788887664 4558899999999987654221 12223445555543 34
Q ss_pred CeEEEEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHH
Q 014743 301 KIKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDIL 342 (419)
Q Consensus 301 ~v~VI~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il 342 (419)
++.+|++||.++ .+++++++ ||+ .+.|++|+.+++.+|+
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 151 ELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 688899999876 67899999 998 6999999999998875
No 53
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.80 E-value=1.7e-18 Score=169.87 Aligned_cols=220 Identities=19% Similarity=0.246 Sum_probs=152.3
Q ss_pred CCCCccccc-C--cHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCc
Q 014743 156 PDSTYDMIG-G--LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS 229 (419)
Q Consensus 156 p~~~~~~I~-G--~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s 229 (419)
|..+|++++ | ...+...+...+..| + ..+.+++|+||||||||++++++++.+ +.+++.+++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL----------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT----------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc----------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 456778876 4 445566666666553 1 246789999999999999999999987 8899999999
Q ss_pred chhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 230 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 230 ~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
++...+.+.........|.... ..++||||||++.+.. +...+..+..+++.+. ..+..+|+++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~----------~~~~~~~l~~~l~~~~---~~~~~iii~~~~ 140 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSG----------KERTQIEFFHIFNTLY---LLEKQIILASDR 140 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTT----------CHHHHHHHHHHHHHHH---HTTCEEEEEESS
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccC----------ChHHHHHHHHHHHHHH---HCCCeEEEEecC
Confidence 8877666554332223333222 3488999999999743 2244555666665542 234456666666
Q ss_pred Ccc---hhhHHhcCCCcee--EEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH-
Q 014743 310 RID---ILDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMF- 382 (419)
Q Consensus 310 ~~~---~ld~allr~gRfd--~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~- 382 (419)
.+. .+++.+.+ ||+ ..+.|++ +.+++..|++.++...++. ++..+..|+..+ | +.+++..++..+...
T Consensus 141 ~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~ 215 (324)
T 1l8q_A 141 HPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKG 215 (324)
T ss_dssp CGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHC
T ss_pred ChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcC
Confidence 666 58899998 886 7899999 9999999999888754431 222367788888 5 778888888877655
Q ss_pred --HHH-hcCCCC-CHHHHHHHHHHHHh
Q 014743 383 --ALR-ERRIHV-TQEDFEMAVAKVMK 405 (419)
Q Consensus 383 --a~~-~~~~~v-t~eD~~~Al~~v~~ 405 (419)
++. .....+ +.+++..++.....
T Consensus 216 ~~~l~~~~~~~i~t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 216 FEGLERKERKERDKLMQIVEFVANYYA 242 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhccccccCCCCHHHHHHHHHHHhC
Confidence 111 223356 78888888876543
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.80 E-value=4.5e-19 Score=193.35 Aligned_cols=225 Identities=26% Similarity=0.339 Sum_probs=167.0
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCce
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTF 223 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~ 223 (419)
...+..|++++|.++.++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..+
T Consensus 179 ~~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~ 245 (758)
T 1r6b_X 179 LARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEE
Confidence 34456789999999999999988765 356789999999999999999999865 5668
Q ss_pred EEEeCcchh--hhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCC
Q 014743 224 IRVSGSELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK 301 (419)
Q Consensus 224 i~v~~s~l~--~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 301 (419)
+.++++.+. .+|.|..+..++.+|..+....++||||||+|.+++.+... ....+..+.+..+ -..++
T Consensus 246 ~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---~~~~~~~~~L~~~-------l~~~~ 315 (758)
T 1r6b_X 246 YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQVDAANLIKPL-------LSSGK 315 (758)
T ss_dssp EECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS---SCHHHHHHHHSSC-------SSSCC
T ss_pred EEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC---cchHHHHHHHHHH-------HhCCC
Confidence 888888776 46888889999999999988889999999999998765321 1222333333222 24567
Q ss_pred eEEEEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-----CCCCHHHHHHHcCC-----
Q 014743 302 IKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-----RGIDLKKIAEKMNG----- 366 (419)
Q Consensus 302 v~VI~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-----~~~dl~~la~~t~G----- 366 (419)
+.+|++||.++ .+|++|.+ ||+ .+.|+.|+.+++.+|++.+...+... .+..+..++..+.|
T Consensus 316 ~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~ 392 (758)
T 1r6b_X 316 IRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR 392 (758)
T ss_dssp CEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTS
T ss_pred eEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccc
Confidence 88999999764 46789998 998 69999999999999998776543211 11124455555443
Q ss_pred CCHHHHHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHHH
Q 014743 367 ASGAELKAVCTEAGMFALR----ERRIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 367 ~sgadi~~l~~~A~~~a~~----~~~~~vt~eD~~~Al~~v~ 404 (419)
+.+..+..++.+|+..+.. .....|+.+|+..++..+.
T Consensus 393 ~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 393 HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp CTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred cCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 5667888899888766543 2356799999999998875
No 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.80 E-value=8.4e-19 Score=174.97 Aligned_cols=214 Identities=20% Similarity=0.224 Sum_probs=155.1
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----------CCceEEEeCc
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----------DCTFIRVSGS 229 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----------~~~~i~v~~s 229 (419)
++++|.+++++.+.+++...+.. ..+.+++|+||||||||++++++++.+ +..++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 68999999999999988653221 456799999999999999999999876 8889999987
Q ss_pred chh-hh----------h-------hchh-HHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH-HHHH
Q 014743 230 ELV-QK----------Y-------IGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT-MLEL 289 (419)
Q Consensus 230 ~l~-~~----------~-------~g~~-~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~-l~~l 289 (419)
... +. . .|.. ...+..++..+....+ ||||||+|.+...+ . ... +..+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~-------~----~~~~l~~l 158 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR-------G----GDIVLYQL 158 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST-------T----SHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC-------C----CceeHHHH
Confidence 543 11 1 1111 2334455554444444 99999999985432 0 122 3334
Q ss_pred HHHccccccCCCeEEEEEeCCc---chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhh-cc--cCCCCCHHHHHHH
Q 014743 290 LNQLDGFEASNKIKVLMATNRI---DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR-MN--LMRGIDLKKIAEK 363 (419)
Q Consensus 290 L~~l~~~~~~~~v~VI~tTn~~---~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~-~~--~~~~~dl~~la~~ 363 (419)
+... .++.||++||.+ +.+++.+.+ ||...+.|++|+.++..+|+..++.. +. ...+..+..++..
T Consensus 159 ~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~ 230 (384)
T 2qby_B 159 LRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAI 230 (384)
T ss_dssp HTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHH
T ss_pred hcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHH
Confidence 3322 679999999987 678899988 88779999999999999999988763 11 1122236677777
Q ss_pred cCCC--CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 364 MNGA--SGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 364 t~G~--sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
+.+. ..+.+..+|+.|...|. +...|+.+|+..|+.++..
T Consensus 231 ~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 231 SAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 7622 45677788888887775 5678999999999988764
No 56
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.80 E-value=8.4e-19 Score=172.47 Aligned_cols=220 Identities=23% Similarity=0.243 Sum_probs=154.8
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh--hh
Q 014743 157 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV--QK 234 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~--~~ 234 (419)
+..+++|+|++++++.+..++.. +.++||+||||||||++|+++|+.++.++++++++... ..
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHH
T ss_pred HHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhh
Confidence 34457899999999988887643 35899999999999999999999999999999874211 11
Q ss_pred hhchhHHH-HHHHHHHHHhhC---CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc------cccCCCeEE
Q 014743 235 YIGEGSRM-VRELFVMAREHA---PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG------FEASNKIKV 304 (419)
Q Consensus 235 ~~g~~~~~-i~~lf~~a~~~~---psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~------~~~~~~v~V 304 (419)
..|..... ....| ..... .+||||||+|.+ ++..++.+.+.+++... .....+++|
T Consensus 88 l~g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~------------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 88 LIGTMIYNQHKGNF--EVKKGPVFSNFILADEVNRS------------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp HHEEEEEETTTTEE--EEEECTTCSSEEEEETGGGS------------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred cCCceeecCCCCce--EeccCcccccEEEEEccccC------------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 11110000 00000 00112 379999999984 45677888888876421 112346778
Q ss_pred EEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-----------------------CCCC
Q 014743 305 LMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-----------------------RGID 356 (419)
Q Consensus 305 I~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-----------------------~~~d 356 (419)
|+|+|..+ .+++++++ ||+..+.|++|+.+++.+|++.+....... ++.-
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 231 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESL 231 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHH
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHH
Confidence 88888543 38999999 999899999999999999998876542110 0111
Q ss_pred HHHHHHHc-------------------CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 014743 357 LKKIAEKM-------------------NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 357 l~~la~~t-------------------~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~ 407 (419)
+..++... .|.|++.+..+++.|...|...++..|+.+|+..|+..++...
T Consensus 232 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 232 EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 23333221 2568999999999998888888888999999999999988644
No 57
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=3.3e-19 Score=186.38 Aligned_cols=229 Identities=16% Similarity=0.220 Sum_probs=149.9
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhccc-CChhHHhhcCCC---CCCeEEEEcCCCChHHHHHHHHHhccCCce
Q 014743 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPI-KHPELFESLGIA---QPKGVLLYGPPGTGKTLLARAVAHHTDCTF 223 (419)
Q Consensus 148 ~~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l-~~~~~~~~~gi~---~p~~iLL~GPpGtGKT~LakalA~~~~~~~ 223 (419)
...|++++++.+|++|+|++.+++.|.+++.... .++..|...|.. +++++||+||||||||++|+++|++++..+
T Consensus 26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 3467888999999999999999999999987522 122333333432 568999999999999999999999999999
Q ss_pred EEEeCcchhhhhhchhHH-------HHHHHHHHH-----HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHH
Q 014743 224 IRVSGSELVQKYIGEGSR-------MVRELFVMA-----REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 291 (419)
Q Consensus 224 i~v~~s~l~~~~~g~~~~-------~i~~lf~~a-----~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~ 291 (419)
+.++++++...+.....- .+..+|..+ ....++||||||+|.+.... ......+..++.
T Consensus 106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~---------~~~l~~L~~~l~ 176 (516)
T 1sxj_A 106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---------RGGVGQLAQFCR 176 (516)
T ss_dssp EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---------TTHHHHHHHHHH
T ss_pred EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh---------HHHHHHHHHHHH
Confidence 999999876554322110 022333333 23568899999999985421 123345555554
Q ss_pred HccccccCCCeEEEEEeCCc--chhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhh--cccCCCCCHHHHHHHcCCC
Q 014743 292 QLDGFEASNKIKVLMATNRI--DILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR--MNLMRGIDLKKIAEKMNGA 367 (419)
Q Consensus 292 ~l~~~~~~~~v~VI~tTn~~--~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~--~~~~~~~dl~~la~~t~G~ 367 (419)
.. ++.||+++|.. ..+++ +. |+...+.|++|+.+++.+++...+.. +.+.. ..+..|+..+.|
T Consensus 177 ~~-------~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~-~~l~~la~~s~G- 243 (516)
T 1sxj_A 177 KT-------STPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP-NVIDRLIQTTRG- 243 (516)
T ss_dssp HC-------SSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT-THHHHHHHHTTT-
T ss_pred hc-------CCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-
Confidence 32 23345555543 33433 43 45568999999999999999876654 33333 337888888876
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 014743 368 SGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 368 sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v 403 (419)
..+.+.++++. .+. ....++.+++..++...
T Consensus 244 diR~~i~~L~~---~~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 244 DIRQVINLLST---IST--TTKTINHENINEISKAW 274 (516)
T ss_dssp CHHHHHHHHTH---HHH--HSSCCCTTHHHHHHHHH
T ss_pred cHHHHHHHHHH---HHh--cCCCCchHHHHHHHHhh
Confidence 33333333332 232 34567777777666543
No 58
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.79 E-value=6.7e-18 Score=167.58 Aligned_cols=222 Identities=21% Similarity=0.312 Sum_probs=156.0
Q ss_pred cccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc------CCceEEEeCcchhh
Q 014743 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGSELVQ 233 (419)
Q Consensus 160 ~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~------~~~~i~v~~s~l~~ 233 (419)
.++++|.++.++.+.+++...+.. ..+..++|+||||||||++++++++.+ +..++.++|.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 378999999999999988653221 456789999999999999999999977 78899999764321
Q ss_pred ------hh----------hch-hHHHHHHHHHHHHhhC-CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc
Q 014743 234 ------KY----------IGE-GSRMVRELFVMAREHA-PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG 295 (419)
Q Consensus 234 ------~~----------~g~-~~~~i~~lf~~a~~~~-psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~ 295 (419)
.. .+. .......++....... |.||+|||++.+.... +... +..++..++.
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~--------~~~~---l~~l~~~~~~ 158 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY--------NDDI---LYKLSRINSE 158 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS--------CSTH---HHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC--------cCHH---HHHHhhchhh
Confidence 10 111 1223445555554443 8999999999986432 1122 3344443332
Q ss_pred cccCCCeEEEEEeCCcc---hhhHHhcCCCcee-EEEEcCCCCHHHHHHHHHHHHhhcc---cCCCCCHHHHHHHcC---
Q 014743 296 FEASNKIKVLMATNRID---ILDQALLRPGRID-RKIEFPNPNEESRLDILKIHSRRMN---LMRGIDLKKIAEKMN--- 365 (419)
Q Consensus 296 ~~~~~~v~VI~tTn~~~---~ld~allr~gRfd-~~I~~~~P~~~~r~~Il~~~~~~~~---~~~~~dl~~la~~t~--- 365 (419)
. ...++.+|++||.++ .+++.+.+ ||. ..+.|++++.++..+|+...+.... ...+..+..++..+.
T Consensus 159 ~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 159 V-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp C-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred c-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 2 345789999999874 56777777 664 5899999999999999998765321 111222455666666
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 366 GASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 366 G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
| +++.+..+|..|...|..++...|+.+|+..|+..+..
T Consensus 236 G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 236 G-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp C-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 5 56777789999998887777889999999999988754
No 59
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.79 E-value=2e-18 Score=173.08 Aligned_cols=241 Identities=20% Similarity=0.258 Sum_probs=151.7
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHh-----------------hcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCce
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFE-----------------SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF 223 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~-----------------~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~ 223 (419)
++|+|++++++.|..++..++.+..... .-...++.++||+||||||||++|+++|+.++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 5789999999999998854332222100 01123567899999999999999999999999999
Q ss_pred EEEeCcchh-hhhhchh-HHHHHHHHHHH----HhhCCceEEecccccccccccCCCC--CCCCHHHHHHHHHHHHHccc
Q 014743 224 IRVSGSELV-QKYIGEG-SRMVRELFVMA----REHAPSIIFMDEIDSIGSARMESGS--GNGDSEVQRTMLELLNQLDG 295 (419)
Q Consensus 224 i~v~~s~l~-~~~~g~~-~~~i~~lf~~a----~~~~psVl~iDEiD~l~~~r~~~~~--~~~~~~~~~~l~~lL~~l~~ 295 (419)
+.++++.+. ..|.|.. ...+..++..+ ....++||||||+|.+...+..... ......+++.|+++|+....
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998876 4566654 44455555542 2446889999999999876432110 01112367778887764210
Q ss_pred -c---------------ccCCCeEEEEEeCCc-----------------------------------------chhhHHh
Q 014743 296 -F---------------EASNKIKVLMATNRI-----------------------------------------DILDQAL 318 (419)
Q Consensus 296 -~---------------~~~~~v~VI~tTn~~-----------------------------------------~~ld~al 318 (419)
+ -...++++|++||.. ..+.|.|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 0 112467788888721 1245777
Q ss_pred cCCCceeEEEEcCCCCHHHHHHHHHH----HHh----h-----ccc-CCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH
Q 014743 319 LRPGRIDRKIEFPNPNEESRLDILKI----HSR----R-----MNL-MRGIDLKKIAEKMN--GASGAELKAVCTEAGMF 382 (419)
Q Consensus 319 lr~gRfd~~I~~~~P~~~~r~~Il~~----~~~----~-----~~~-~~~~dl~~la~~t~--G~sgadi~~l~~~A~~~ 382 (419)
++ ||+.++.|++++.++...|+.. ++. . ..+ .++.-+..|+.... ....+.+.+++..+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 77 9999999999999999999862 211 1 111 11122455666643 35789999999998887
Q ss_pred HHHhc------CCCCCHHHHHHHHHHH
Q 014743 383 ALRER------RIHVTQEDFEMAVAKV 403 (419)
Q Consensus 383 a~~~~------~~~vt~eD~~~Al~~v 403 (419)
++.+. ...|+.+++..+...+
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTSSCCE
T ss_pred HHhhccCCCCCEEEEeHHHhcCCCCce
Confidence 66542 2358888887655443
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.79 E-value=7.1e-18 Score=156.58 Aligned_cols=206 Identities=13% Similarity=0.128 Sum_probs=146.6
Q ss_pred CCCCcccccC---cHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCc
Q 014743 156 PDSTYDMIGG---LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS 229 (419)
Q Consensus 156 p~~~~~~I~G---~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s 229 (419)
|..+|++++| ...+++.+..++.. ..+.+++|+||||||||+++++++..+ +..++.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3467788876 35777777776654 256889999999999999999999876 4678889888
Q ss_pred chhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 230 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 230 ~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
++...+.... . ....|.+|||||++.+.. ....+..+..+++... ..+.+.+|++||
T Consensus 90 ~~~~~~~~~~--------~--~~~~~~vliiDe~~~~~~----------~~~~~~~l~~~l~~~~---~~~~~~ii~~~~ 146 (242)
T 3bos_A 90 IHASISTALL--------E--GLEQFDLICIDDVDAVAG----------HPLWEEAIFDLYNRVA---EQKRGSLIVSAS 146 (242)
T ss_dssp GGGGSCGGGG--------T--TGGGSSEEEEETGGGGTT----------CHHHHHHHHHHHHHHH---HHCSCEEEEEES
T ss_pred HHHHHHHHHH--------H--hccCCCEEEEeccccccC----------CHHHHHHHHHHHHHHH---HcCCCeEEEEcC
Confidence 8765432111 1 114578999999999732 2333555666665542 223343555555
Q ss_pred C-cc---hhhHHhcCCCcee--EEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 014743 310 R-ID---ILDQALLRPGRID--RKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGMF 382 (419)
Q Consensus 310 ~-~~---~ld~allr~gRfd--~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~~ 382 (419)
. +. .+++.+.+ ||. ..+.|++|+.+++.+++..++...+.. ++..+..++..+.| +.+++..++..+...
T Consensus 147 ~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 147 ASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKA 223 (242)
T ss_dssp SCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 3 33 45588888 885 899999999999999999887654432 22236678888876 889999999998888
Q ss_pred HHHhcCCCCCHHHHHHHHH
Q 014743 383 ALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 383 a~~~~~~~vt~eD~~~Al~ 401 (419)
|...+ ..|+.+|+..++.
T Consensus 224 a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHT-CCCCHHHHHHHHT
T ss_pred HHHhC-CCCcHHHHHHHhh
Confidence 75544 4699999998874
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.78 E-value=1e-18 Score=180.52 Aligned_cols=210 Identities=20% Similarity=0.274 Sum_probs=146.1
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCc
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCT 222 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~ 222 (419)
....+..+++|+|.++.++.+.+.+.. ..+.++||+||||||||++|+++|..+ +..
T Consensus 172 ~~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 238 (468)
T 3pxg_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (468)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HHHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCe
Confidence 345667789999999999999998865 345689999999999999999999975 778
Q ss_pred eEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCe
Q 014743 223 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 302 (419)
Q Consensus 223 ~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 302 (419)
++.++++ ..|.|+.+..++.+|..+....|.||||| + ..+.++.|..+| ..+.+
T Consensus 239 ~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-----------~~~a~~~L~~~L-------~~g~v 292 (468)
T 3pxg_A 239 VMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-----------AIDASNILKPSL-------ARGEL 292 (468)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C-------------------CCCT-------TSSSC
T ss_pred EEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-----------chhHHHHHHHhh-------cCCCE
Confidence 8998888 77888888889999999998889999999 1 011233333332 34579
Q ss_pred EEEEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCC-----CHHHHHHHcCCC-----
Q 014743 303 KVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI-----DLKKIAEKMNGA----- 367 (419)
Q Consensus 303 ~VI~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~-----dl~~la~~t~G~----- 367 (419)
.||++||... .++++|.+ ||. .|.|+.|+.+++..|++.+........++ .+..++..+.+|
T Consensus 293 ~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~ 369 (468)
T 3pxg_A 293 QCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (468)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred EEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCc
Confidence 9999999887 68999999 998 59999999999999999877664322222 245555555444
Q ss_pred CHHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHH
Q 014743 368 SGAELKAVCTEAGMFALRE-RRIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 368 sgadi~~l~~~A~~~a~~~-~~~~vt~eD~~~Al~~v~ 404 (419)
.+.....++.+|+..+..+ ....-...+++..+..+.
T Consensus 370 lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~ 407 (468)
T 3pxg_A 370 LPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVR 407 (468)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 4557778888777655433 334455566666666554
No 62
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.78 E-value=3.6e-17 Score=161.70 Aligned_cols=222 Identities=19% Similarity=0.237 Sum_probs=161.8
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 152 ~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
+..+.+.+|+++.|++.+++.+...+..... -| .++.+++|+||||||||||++++|+.+++++...+++.+
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 4456667889999999999999888754210 01 356789999999999999999999999988877776544
Q ss_pred hhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcc-------ccc------c
Q 014743 232 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD-------GFE------A 298 (419)
Q Consensus 232 ~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~-------~~~------~ 298 (419)
.. ...+..++.. ...+.|+|+||++.+. +.....+...+.... +.. .
T Consensus 88 ~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~------------~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 88 VK------QGDMAAILTS--LERGDVLFIDEIHRLN------------KAVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp CS------HHHHHHHHHH--CCTTCEEEEETGGGCC------------HHHHHHHHHHHHTSCCCC--------------
T ss_pred cC------HHHHHHHHHH--ccCCCEEEEcchhhcC------------HHHHHHHHHHHHhcccceeeccCccccccccc
Confidence 22 1122233221 2356799999999863 234444544443321 000 0
Q ss_pred CCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHH
Q 014743 299 SNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCT 377 (419)
Q Consensus 299 ~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~ 377 (419)
-..+.++++|+++..+++.+++ ||...+.|++|+.+++.+|++...+..... ++..+..||.++.| +++++..+++
T Consensus 148 l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~ 224 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTK 224 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHH
T ss_pred CCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 1246788899999999999999 999889999999999999999877654432 12236778888888 6789999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 014743 378 EAGMFALRERRIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 378 ~A~~~a~~~~~~~vt~eD~~~Al~~v~ 404 (419)
.+...|...+...||.+++..|+..+.
T Consensus 225 ~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 225 RVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 998888777778899999999998764
No 63
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.78 E-value=9.6e-18 Score=167.20 Aligned_cols=220 Identities=18% Similarity=0.222 Sum_probs=156.1
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCC--eEEEEcCCCChHHHHHHHHHhcc----CCceEEEeCcchhhh
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPK--GVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGSELVQK 234 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~--~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~s~l~~~ 234 (419)
++++|.+++++.+.+++...+.. ..+. .++|+||||||||++++++++.+ +..++.++|+.....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 78999999999999988653221 2344 89999999999999999999977 567899997654321
Q ss_pred ---------hh-------chh-HHHHHHHHHHHHh-hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc
Q 014743 235 ---------YI-------GEG-SRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF 296 (419)
Q Consensus 235 ---------~~-------g~~-~~~i~~lf~~a~~-~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~ 296 (419)
.+ +.. ......+...... ..|.||+|||+|.+ +......+..++..+..
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l------------~~~~~~~L~~~~~~~~~- 154 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL------------APDILSTFIRLGQEADK- 154 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS------------CHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc------------chHHHHHHHHHHHhCCC-
Confidence 01 111 1222233333332 45889999999995 34445555555433210
Q ss_pred ccCCCeEEEEEeCCc---chhhHHhcCCCceeE-EEEcCCCCHHHHHHHHHHHHhhcc---cCCCCCHHHHHHHcC----
Q 014743 297 EASNKIKVLMATNRI---DILDQALLRPGRIDR-KIEFPNPNEESRLDILKIHSRRMN---LMRGIDLKKIAEKMN---- 365 (419)
Q Consensus 297 ~~~~~v~VI~tTn~~---~~ld~allr~gRfd~-~I~~~~P~~~~r~~Il~~~~~~~~---~~~~~dl~~la~~t~---- 365 (419)
....++.||++||.+ +.+++.+.+ ||.. .+.|++++.++..+++...+.... ..++..+..++..+.
T Consensus 155 ~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (389)
T 1fnn_A 155 LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTP 232 (389)
T ss_dssp HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSST
T ss_pred CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccc
Confidence 001578999999988 567777777 7764 899999999999999988776421 122333667888883
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 366 -----GASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 366 -----G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
| .++.+..+|+.|...|..++...++.+|+..|+..+..
T Consensus 233 ~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~ 276 (389)
T 1fnn_A 233 LDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276 (389)
T ss_dssp TCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC
T ss_pred CCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh
Confidence 4 66888999999999888878889999999999887753
No 64
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=3.1e-17 Score=159.61 Aligned_cols=192 Identities=22% Similarity=0.293 Sum_probs=139.4
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC-----Cce
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTF 223 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~-----~~~ 223 (419)
..+.+++++.+|++++|++++++.+..++... .+.++||+||||||||++|+++++.+. ..+
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 35677888999999999999999999988652 234599999999999999999998753 347
Q ss_pred EEEeCcchhhhhhchhHHHHHHHHH-HHHh-----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc
Q 014743 224 IRVSGSELVQKYIGEGSRMVRELFV-MARE-----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297 (419)
Q Consensus 224 i~v~~s~l~~~~~g~~~~~i~~lf~-~a~~-----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~ 297 (419)
+.+++++.... ..++..+. .+.. ..+.||+|||+|.+ ....++.+..++++.
T Consensus 80 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l------------~~~~~~~L~~~le~~---- 137 (327)
T 1iqp_A 80 LELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADAL------------TQDAQQALRRTMEMF---- 137 (327)
T ss_dssp EEEETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS------------CHHHHHHHHHHHHHT----
T ss_pred EEeeccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC------------CHHHHHHHHHHHHhc----
Confidence 78887654221 11112111 1211 34789999999995 244566677777653
Q ss_pred cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 014743 298 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVC 376 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~ 376 (419)
..++.+|++||.++.+.+.+.+ |+. .+.|++|+.++...++...+...++. ++..+..++..+.| +.+.+.+++
T Consensus 138 -~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l 212 (327)
T 1iqp_A 138 -SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINIL 212 (327)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred -CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHH
Confidence 3578899999999999999988 876 78999999999999998877654431 22236678888777 556666666
Q ss_pred HHHH
Q 014743 377 TEAG 380 (419)
Q Consensus 377 ~~A~ 380 (419)
+.+.
T Consensus 213 ~~~~ 216 (327)
T 1iqp_A 213 QAAA 216 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.2e-18 Score=170.99 Aligned_cols=214 Identities=11% Similarity=0.131 Sum_probs=149.6
Q ss_pred ccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCceEEEeCcchh
Q 014743 163 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGSELV 232 (419)
Q Consensus 163 I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~i~v~~s~l~ 232 (419)
+.|.+++++.|..++...+.. ..|.+++|+||||||||++++++++++ ...+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 778999999999888764322 578999999999999999999999977 3468899987654
Q ss_pred hh----------hh------chhHHHHHHHHHHH--HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcc
Q 014743 233 QK----------YI------GEGSRMVRELFVMA--REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD 294 (419)
Q Consensus 233 ~~----------~~------g~~~~~i~~lf~~a--~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~ 294 (419)
+. .. +.....++.+|..+ ....+.||+|||+|.|. . ++.+..+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-----------~---q~~L~~l~~~~~ 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-----------S---EKILQYFEKWIS 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-----------C---THHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-----------c---chHHHHHHhccc
Confidence 32 21 23445677778764 34567899999999985 1 244555554322
Q ss_pred ccccCCCeEEEEEeCCcch----hhHHhcCCCcee-EEEEcCCCCHHHHHHHHHHHHhhcccC-----------------
Q 014743 295 GFEASNKIKVLMATNRIDI----LDQALLRPGRID-RKIEFPNPNEESRLDILKIHSRRMNLM----------------- 352 (419)
Q Consensus 295 ~~~~~~~v~VI~tTn~~~~----ld~allr~gRfd-~~I~~~~P~~~~r~~Il~~~~~~~~~~----------------- 352 (419)
....+++||+++|..+. +++.+.+ ||. ..|.|++++.++..+|++..+....-.
T Consensus 159 --~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~ 234 (318)
T 3te6_A 159 --SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNI 234 (318)
T ss_dssp --CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC
T ss_pred --ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 13467999999998764 4455566 886 689999999999999999887764210
Q ss_pred ---------C-------CCC---HHHHHHH---cCCCCHHHHHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHH
Q 014743 353 ---------R-------GID---LKKIAEK---MNGASGAELKAVCTEAGMFALRE---------RRIHVTQEDFEMAVA 401 (419)
Q Consensus 353 ---------~-------~~d---l~~la~~---t~G~sgadi~~l~~~A~~~a~~~---------~~~~vt~eD~~~Al~ 401 (419)
+ .++ +..+|+. ..| ..+-.-.+|+.|+..|-++ +...||.+.+..++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~ 313 (318)
T 3te6_A 235 REGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFS 313 (318)
T ss_dssp --------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHH
T ss_pred cccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHH
Confidence 0 112 4445553 334 3344557889998888653 235677777777777
Q ss_pred HHH
Q 014743 402 KVM 404 (419)
Q Consensus 402 ~v~ 404 (419)
+++
T Consensus 314 ~~~ 316 (318)
T 3te6_A 314 EAI 316 (318)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 66
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=3.7e-17 Score=158.83 Aligned_cols=207 Identities=18% Similarity=0.185 Sum_probs=148.4
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceE
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFI 224 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i 224 (419)
.+.+++++.+|++++|++.+++.+.+++... ..|. ++|+||||+|||++++++++.+ ...++
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 76 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDG------------NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVL 76 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSC------------CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHcC------------CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEE
Confidence 3556778888999999999999999988652 2334 9999999999999999999875 34577
Q ss_pred EEeCcchhhhhhchhHHHHHHHHHHHH-------hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc
Q 014743 225 RVSGSELVQKYIGEGSRMVRELFVMAR-------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297 (419)
Q Consensus 225 ~v~~s~l~~~~~g~~~~~i~~lf~~a~-------~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~ 297 (419)
.+++++... ...++.++.... ...+.||+|||+|.+. ....+.+..++.+.
T Consensus 77 ~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~------------~~~~~~L~~~le~~---- 134 (323)
T 1sxj_B 77 ELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT------------AGAQQALRRTMELY---- 134 (323)
T ss_dssp EECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC------------HHHHHTTHHHHHHT----
T ss_pred EecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC------------HHHHHHHHHHHhcc----
Confidence 887765321 234455555444 2347899999999962 34455666666653
Q ss_pred cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHH
Q 014743 298 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVC 376 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~ 376 (419)
..++.+|++||.+..+.+.+.+ |+. .+.|++|+.++..+++...+...++. ++..+..++..+.| +.+.+.+++
T Consensus 135 -~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l 209 (323)
T 1sxj_B 135 -SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNL 209 (323)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred -CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 3578899999999999999988 765 89999999999999998877643322 22336678888877 444545555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHH
Q 014743 377 TEAGMFALRERRIHVTQEDFEMAVA 401 (419)
Q Consensus 377 ~~A~~~a~~~~~~~vt~eD~~~Al~ 401 (419)
+.+... ...++.+++..++.
T Consensus 210 ~~~~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 210 QSTVAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHH-----HSSBCHHHHHHHHT
T ss_pred HHHHhc-----CCCcCHHHHHHHHC
Confidence 444321 13577888776654
No 67
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.76 E-value=4.2e-18 Score=151.65 Aligned_cols=155 Identities=21% Similarity=0.371 Sum_probs=117.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCce
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTF 223 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~ 223 (419)
...+..|++++|.++.++.+.+.+.. ..+.+++|+||||||||+++++++..+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 34456788999999999999988754 346789999999999999999999876 6778
Q ss_pred EEEeCcchhh--hhhchhHHHHHHHHHHHHhh-CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCC
Q 014743 224 IRVSGSELVQ--KYIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 300 (419)
Q Consensus 224 i~v~~s~l~~--~~~g~~~~~i~~lf~~a~~~-~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~ 300 (419)
+.++++.+.. .+.+.....+..++..+... .|.||||||+|.+.+.+... .......+.+..+++ ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~~l~~~~~-------~~ 151 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA---EGALDAGNILKPMLA-------RG 151 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC---TTSCCTHHHHHHHHH-------TT
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc---ccchHHHHHHHHHHh-------cC
Confidence 8888877653 35566666777888777665 67899999999997654311 111234455555543 35
Q ss_pred CeEEEEEeCCcc-----hhhHHhcCCCceeEEEEcCCCC
Q 014743 301 KIKVLMATNRID-----ILDQALLRPGRIDRKIEFPNPN 334 (419)
Q Consensus 301 ~v~VI~tTn~~~-----~ld~allr~gRfd~~I~~~~P~ 334 (419)
++.+|++||.+. .+++++++ ||+. +.+++|+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 152 ELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp CSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 688999999876 58999999 9995 9999986
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=4.9e-18 Score=185.25 Aligned_cols=208 Identities=20% Similarity=0.274 Sum_probs=143.9
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCc
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCT 222 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~ 222 (419)
+...+..+++|+|.++.++.+.+.+.. ..+.++||+||||||||++|+++|..+ ++.
T Consensus 172 ~~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~ 238 (758)
T 3pxi_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (758)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HHHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe
Confidence 345566789999999999999998865 356789999999999999999999986 778
Q ss_pred eEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCe
Q 014743 223 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 302 (419)
Q Consensus 223 ~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 302 (419)
++.+++ ..+|.|+.+..++.+|..+....|+|||||. . ...++.+...+ ..+.+
T Consensus 239 ~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~---------------~-~~~~~~L~~~l-------~~~~v 292 (758)
T 3pxi_A 239 VMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFIDA---------------A-IDASNILKPSL-------ARGEL 292 (758)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEECC------------------------CCCT-------TSSSC
T ss_pred EEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEcC---------------c-hhHHHHHHHHH-------hcCCE
Confidence 888887 5678899899999999999999999999991 0 11223333222 35679
Q ss_pred EEEEEeCCcc-----hhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCC-----HHHHHHH-----cCCC
Q 014743 303 KVLMATNRID-----ILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID-----LKKIAEK-----MNGA 367 (419)
Q Consensus 303 ~VI~tTn~~~-----~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~d-----l~~la~~-----t~G~ 367 (419)
.+|++||... .+++++.+ ||. .|.|+.|+.+++.+||+.+.........++ +..++.. ++++
T Consensus 293 ~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~ 369 (758)
T 3pxi_A 293 QCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (758)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred EEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCc
Confidence 9999999988 68999999 994 699999999999999998776644333332 3344443 3467
Q ss_pred CHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 014743 368 SGAELKAVCTEAGMFALRER-RIHVTQEDFEMAVAK 402 (419)
Q Consensus 368 sgadi~~l~~~A~~~a~~~~-~~~vt~eD~~~Al~~ 402 (419)
.+.+...++.+|+..+.... ...-...+++..+..
T Consensus 370 ~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~ 405 (758)
T 3pxi_A 370 LPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDE 405 (758)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHH
Confidence 77888888888876554332 223333444444443
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.75 E-value=6.5e-18 Score=186.57 Aligned_cols=204 Identities=19% Similarity=0.275 Sum_probs=139.6
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----------CCce
Q 014743 154 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTF 223 (419)
Q Consensus 154 ~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----------~~~~ 223 (419)
...+..+++++|.++.++.+.+.+.. ..+.+++|+||||||||++++++|..+ +..+
T Consensus 163 ~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 229 (854)
T 1qvr_A 163 LAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 229 (854)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEE
T ss_pred HHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeE
Confidence 44567889999999999999988754 345678999999999999999999976 7789
Q ss_pred EEEeCcchh--hhhhchhHHHHHHHHHHHHhh-CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCC
Q 014743 224 IRVSGSELV--QKYIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASN 300 (419)
Q Consensus 224 i~v~~s~l~--~~~~g~~~~~i~~lf~~a~~~-~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~ 300 (419)
+.++++.+. .+|.|+.+..++.+|..+... .|+||||||+|.+.+.+... +..+..+.+..++. .+
T Consensus 230 ~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~----g~~~~~~~L~~~l~-------~~ 298 (854)
T 1qvr_A 230 VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE----GAVDAGNMLKPALA-------RG 298 (854)
T ss_dssp EEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHH-------TT
T ss_pred EEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc----chHHHHHHHHHHHh-------CC
Confidence 999999887 578888899999999998875 68999999999997654321 22344555666653 35
Q ss_pred CeEEEEEeCCcch----hhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCC-----CCCHHHHHHHc-----CC
Q 014743 301 KIKVLMATNRIDI----LDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMR-----GIDLKKIAEKM-----NG 366 (419)
Q Consensus 301 ~v~VI~tTn~~~~----ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~-----~~dl~~la~~t-----~G 366 (419)
++.+|++||.++. ++++|.+ ||+. +.|++|+.+++.+|++.++....... +..+..++..+ +.
T Consensus 299 ~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~ 375 (854)
T 1qvr_A 299 ELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITER 375 (854)
T ss_dssp CCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSS
T ss_pred CeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccc
Confidence 6789999997753 6899999 9985 99999999999999987766442211 11244444543 46
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 014743 367 ASGAELKAVCTEAGMFAL 384 (419)
Q Consensus 367 ~sgadi~~l~~~A~~~a~ 384 (419)
|.+.....++.+|+..+.
T Consensus 376 ~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 376 RLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp CTHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHH
Confidence 778888888888876554
No 70
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.75 E-value=1.5e-17 Score=161.41 Aligned_cols=209 Identities=21% Similarity=0.226 Sum_probs=141.3
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceE
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFI 224 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i 224 (419)
.+.+++++.+|++++|++.+++.+.+++... .. .++||+||||||||++|+++++.+ +.+++
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 72 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTT------------CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCC------------CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence 4667888899999999999999999887541 22 349999999999999999999875 34578
Q ss_pred EEeCcchhhhhhchhHHHHHHHHHHH-H-hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCe
Q 014743 225 RVSGSELVQKYIGEGSRMVRELFVMA-R-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKI 302 (419)
Q Consensus 225 ~v~~s~l~~~~~g~~~~~i~~lf~~a-~-~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 302 (419)
.+++++.... ......+....... . ...+.||+|||+|.+. ...++.+..++ +. ...++
T Consensus 73 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~L~~~l---e~--~~~~~ 133 (319)
T 2chq_A 73 EMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT------------ADAQAALRRTM---EM--YSKSC 133 (319)
T ss_dssp EEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC------------HHHHHTTGGGT---SS--SSSSE
T ss_pred EEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC------------HHHHHHHHHHH---Hh--cCCCC
Confidence 8888764321 11111222221000 0 1347899999999962 23334343333 22 24578
Q ss_pred EEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 014743 303 KVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKMNGASGAELKAVCTEAGM 381 (419)
Q Consensus 303 ~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~G~sgadi~~l~~~A~~ 381 (419)
.+|++||.+..+.+.+.+ |+. .+.|++|+.+++..++...+...+.. ++..+..++..+.| +.+.+.++++.+..
T Consensus 134 ~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 134 RFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA 209 (319)
T ss_dssp EEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred eEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 899999999999999998 776 89999999999999998887654432 22235667776666 44555555554432
Q ss_pred HHHHhcCCCCCHHHHHHH
Q 014743 382 FALRERRIHVTQEDFEMA 399 (419)
Q Consensus 382 ~a~~~~~~~vt~eD~~~A 399 (419)
. ...++.+++..+
T Consensus 210 ~-----~~~i~~~~v~~~ 222 (319)
T 2chq_A 210 I-----GEVVDADTIYQI 222 (319)
T ss_dssp S-----SSCBCHHHHHHH
T ss_pred c-----CCCCCHHHHHHH
Confidence 1 235666666543
No 71
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.74 E-value=5.8e-18 Score=175.84 Aligned_cols=212 Identities=17% Similarity=0.147 Sum_probs=139.8
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC--ceEEEeCc-----chhh
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGS-----ELVQ 233 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~--~~i~v~~s-----~l~~ 233 (419)
..|+|++++++.+..++.. +.++||+||||||||++|+++|..++. +|..+.+. ++++
T Consensus 22 ~~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 4689999999888776643 368999999999999999999998743 45555443 2222
Q ss_pred hhhchhHHHHHHHHHHHHhh---CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcc----ccc-cCCCeEEE
Q 014743 234 KYIGEGSRMVRELFVMAREH---APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD----GFE-ASNKIKVL 305 (419)
Q Consensus 234 ~~~g~~~~~i~~lf~~a~~~---~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~----~~~-~~~~v~VI 305 (419)
.+.+..... ...|..+... .++|||||||+. ..+..+..+++++++.. +.. ..+..++|
T Consensus 87 ~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r------------~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 87 PLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWK------------AGPAILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGG------------CCHHHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred cccHHHHhh-chhHHhhhccCCCcceeeeHHhHhh------------hcHHHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 222221111 1222222222 467999999987 45778888888887532 111 11233568
Q ss_pred EEeCCcch---hhHHhcCCCceeEEEEcCCCCH-HHHHHHHHHHHh-------------------------hcccCCCCC
Q 014743 306 MATNRIDI---LDQALLRPGRIDRKIEFPNPNE-ESRLDILKIHSR-------------------------RMNLMRGID 356 (419)
Q Consensus 306 ~tTn~~~~---ld~allr~gRfd~~I~~~~P~~-~~r~~Il~~~~~-------------------------~~~~~~~~d 356 (419)
+|||.+.. +.+++++ ||...+.+|+|+. +++..|+..+.. ...+.+++
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v- 230 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV- 230 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-
Confidence 88886433 4568998 9999999999987 778888875432 11111111
Q ss_pred HHHHHHHc---------CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 014743 357 LKKIAEKM---------NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 357 l~~la~~t---------~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~ 404 (419)
...++... .|.|++.+..+++.|...|..+++..|+.+|+. ++..++
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 23333332 488999999999999999999999999999988 544444
No 72
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=4.6e-17 Score=160.98 Aligned_cols=196 Identities=18% Similarity=0.260 Sum_probs=138.0
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHh-hcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC-------
Q 014743 150 MKVEKVPDSTYDMIGGLDQQIKEIKEVI-ELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC------- 221 (419)
Q Consensus 150 ~~~~~~p~~~~~~I~G~~~~~~~l~~~i-~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~------- 221 (419)
.|++++.+.+|++++|++++++.+..++ ... ..|. ++|+|||||||||+++++++.+..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~------------~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPR------------DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTT------------CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCC------------CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 5778899999999999999999998887 331 2344 999999999999999999995311
Q ss_pred ----------------------ceEEEeCcchhhhhhchhHHHHHHHHHHHH--------------hhCCceEEeccccc
Q 014743 222 ----------------------TFIRVSGSELVQKYIGEGSRMVRELFVMAR--------------EHAPSIIFMDEIDS 265 (419)
Q Consensus 222 ----------------------~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~--------------~~~psVl~iDEiD~ 265 (419)
.++.++.++.. ......+++.+..+. ...|.||+|||++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~ 145 (354)
T 1sxj_E 70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS 145 (354)
T ss_dssp ----------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTS
T ss_pred ecceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc
Confidence 12222222110 000112444444332 23677999999888
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHH
Q 014743 266 IGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH 345 (419)
Q Consensus 266 l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~ 345 (419)
+ +...++.+..++.+. ..++.+|++||.++.+.+.+.+ |+ ..+.|++|+.+++.++++..
T Consensus 146 L------------~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 146 L------------TKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp S------------CHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred c------------CHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHH
Confidence 3 456677777777764 3468899999999999999998 87 78999999999999999887
Q ss_pred HhhcccC-C-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 014743 346 SRRMNLM-R-GIDLKKIAEKMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 346 ~~~~~~~-~-~~dl~~la~~t~G~sgadi~~l~~~A~~~a 383 (419)
....++. + +..+..++..+.| +.+++..+++.+...+
T Consensus 206 ~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 206 VTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred HHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 7654332 2 3347788888877 6667777776665443
No 73
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.73 E-value=7.3e-17 Score=160.25 Aligned_cols=206 Identities=17% Similarity=0.226 Sum_probs=147.7
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc--------
Q 014743 151 KVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-------- 222 (419)
Q Consensus 151 ~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~-------- 222 (419)
+.+++.+.+|++++|++++++.+.+.+... ..+..+||+||||||||++++++|+.+.+.
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 73 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 345677788999999999999999988642 345679999999999999999999876432
Q ss_pred ----------------eEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHH
Q 014743 223 ----------------FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEV 282 (419)
Q Consensus 223 ----------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~ 282 (419)
++.++++.- .....++.+++.+.. ..+.||+|||+|.+ +...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l------------~~~~ 135 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML------------SRHS 135 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS------------CHHH
T ss_pred cccHHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchh------------cHHH
Confidence 233332210 111235566665542 34679999999995 2345
Q ss_pred HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHH
Q 014743 283 QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIA 361 (419)
Q Consensus 283 ~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la 361 (419)
.+.+..++.+ ...++++|++|+.+..+.+.+.+ |+ ..+.|++|+.++...++...++..+.. ++..+..++
T Consensus 136 ~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~ 207 (373)
T 1jr3_A 136 FNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 (373)
T ss_dssp HHHHHHHHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5666666653 34578999999999999999988 76 689999999999999999887654432 122266788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
..+.| +.+++.+++..+...+ ...|+.+|+..+
T Consensus 208 ~~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~ 240 (373)
T 1jr3_A 208 RAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAM 240 (373)
T ss_dssp HHSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHH
Confidence 88877 7778888887765332 345777777654
No 74
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.69 E-value=2.4e-16 Score=150.09 Aligned_cols=208 Identities=19% Similarity=0.221 Sum_probs=128.6
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC---CceEEEeCcchhhh
Q 014743 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSELVQK 234 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~---~~~i~v~~s~l~~~ 234 (419)
.+|++++|.+.+++.+.+.+.... ..+.++||+||||||||++|++++..+. .+++.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 467899999999999988776531 2357899999999999999999999764 68999999876432
Q ss_pred -----hhchhHHHH-------HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc------c
Q 014743 235 -----YIGEGSRMV-------RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG------F 296 (419)
Q Consensus 235 -----~~g~~~~~i-------~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~------~ 296 (419)
.+|...+.. ...+.. ..+.+|||||+|.+ ....+..+.++++...- .
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l------------~~~~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATA------------PMMVQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGS------------CHHHHHHHHHHHHHCEECCCCC--
T ss_pred HHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhc------------CHHHHHHHHHHHHhCCeecCCCcc
Confidence 222211100 012222 24679999999995 35677778888876421 0
Q ss_pred ccCCCeEEEEEeCCc-c------hhhHHhcCCCcee-EEEEcCCCCH--HHHHHHHHHHHhh----cccC--CCCCHH--
Q 014743 297 EASNKIKVLMATNRI-D------ILDQALLRPGRID-RKIEFPNPNE--ESRLDILKIHSRR----MNLM--RGIDLK-- 358 (419)
Q Consensus 297 ~~~~~v~VI~tTn~~-~------~ld~allr~gRfd-~~I~~~~P~~--~~r~~Il~~~~~~----~~~~--~~~dl~-- 358 (419)
....++.||+|||.. . .+++.|.+ ||. ..|.+|+++. ++...+++.++.. .... ..++-+
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~ 214 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERAR 214 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHH
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence 112468899999974 2 35678887 885 4677777654 5566666555443 2221 133333
Q ss_pred -HHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 014743 359 -KIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDF 396 (419)
Q Consensus 359 -~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~ 396 (419)
.|.......+.++|.++++.+...+ ....|+.+|+
T Consensus 215 ~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 215 ETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 3333332335689999998887655 3345555554
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=1.2e-15 Score=150.61 Aligned_cols=210 Identities=20% Similarity=0.238 Sum_probs=141.0
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC-----ce
Q 014743 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-----TF 223 (419)
Q Consensus 149 ~~~~~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~-----~~ 223 (419)
..+.+++++.+|+++.|++.+++.|...|... ..| +++|+||||||||++++++|+.+.. .+
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g------------~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEG------------KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT------------CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcC------------CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 45777889999999999999999999988652 223 3999999999999999999997632 35
Q ss_pred EEEeCcchhhhhhchhHHHHHHHHHHHHh------hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc
Q 014743 224 IRVSGSELVQKYIGEGSRMVRELFVMARE------HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297 (419)
Q Consensus 224 i~v~~s~l~~~~~g~~~~~i~~lf~~a~~------~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~ 297 (419)
+.++.++... ...+++.+..... ..+.|++|||+|.+. ...++.+..++++.
T Consensus 80 ~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~------------~~~~~~L~~~le~~---- 137 (340)
T 1sxj_C 80 LELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT------------NAAQNALRRVIERY---- 137 (340)
T ss_dssp EEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC------------HHHHHHHHHHHHHT----
T ss_pred EEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC------------HHHHHHHHHHHhcC----
Confidence 6666654211 1233333332221 236899999999862 34566676766654
Q ss_pred cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhh--cccCCCCCHHHHHHHcCCCCHHHHHHH
Q 014743 298 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRR--MNLMRGIDLKKIAEKMNGASGAELKAV 375 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~--~~~~~~~dl~~la~~t~G~sgadi~~l 375 (419)
..++.+|++||.+..+.+.+.+ |+. .+.|++++.++..+++...+.. +.+. +.....++..+.| ..+.+.++
T Consensus 138 -~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~-~~~~~~i~~~s~G-~~r~~~~~ 211 (340)
T 1sxj_C 138 -TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLS-PNAEKALIELSNG-DMRRVLNV 211 (340)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBC-HHHHHHHHHHHTT-CHHHHHHH
T ss_pred -CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC-CHHHHHHH
Confidence 3567888999999999999998 876 7899999999998888877643 3332 2235567777766 33444344
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 376 CTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 376 ~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
++.+...+...+...++.+++..+
T Consensus 212 l~~~~~~~~~~~~~~it~~~v~~~ 235 (340)
T 1sxj_C 212 LQSCKATLDNPDEDEISDDVIYEC 235 (340)
T ss_dssp TTTTTTTTCSSSCCCBCHHHHHHH
T ss_pred HHHHHHhcCCcccccccHHHHHHH
Confidence 433322221111225777666543
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=5.7e-17 Score=172.13 Aligned_cols=225 Identities=20% Similarity=0.164 Sum_probs=145.3
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEE----eCcchhhhh-
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV----SGSELVQKY- 235 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v----~~s~l~~~~- 235 (419)
..|.|++.+++.+.-++... .+.......+....++||+||||||||++|+++|..+...++.. ++..+....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 46788888777664443221 00000001223344899999999999999999999886554432 222222111
Q ss_pred ----hchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccc--------cccCCCeE
Q 014743 236 ----IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG--------FEASNKIK 303 (419)
Q Consensus 236 ----~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~--------~~~~~~v~ 303 (419)
.|..... ...+..| ...|+||||||++ ++..+..++++|++..- .....++.
T Consensus 373 ~~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l------------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 373 REKGTGEYYLE-AGALVLA---DGGIAVIDEIDKM------------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SGGGTSSCSEE-ECHHHHH---SSSEECCTTTTCC------------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred ecccccccccc-CCeeEec---CCCcEEeehhhhC------------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 1110000 0112222 4579999999994 45677888888875321 11234788
Q ss_pred EEEEeCCcc-------------hhhHHhcCCCceeE-EEEcCCCCHHHHHHHHHHHHhhcc-------------------
Q 014743 304 VLMATNRID-------------ILDQALLRPGRIDR-KIEFPNPNEESRLDILKIHSRRMN------------------- 350 (419)
Q Consensus 304 VI~tTn~~~-------------~ld~allr~gRfd~-~I~~~~P~~~~r~~Il~~~~~~~~------------------- 350 (419)
||+|||... .+++++++ |||. .+..+.|+.+ ...|.+..+....
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ 513 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAY 513 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHH
Confidence 999999886 89999999 9984 5566677777 7777776554211
Q ss_pred -------cCCCCCHHHHHHH--------------cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 014743 351 -------LMRGIDLKKIAEK--------------MNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 406 (419)
Q Consensus 351 -------~~~~~dl~~la~~--------------t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~ 406 (419)
..++.....|... +.+.|++.+.++++.|...|..+.+..|+.+|+..|+.-+..+
T Consensus 514 ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 514 ARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp HHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 1112223334443 3478999999999999999988899999999999999876543
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.61 E-value=2.2e-15 Score=147.11 Aligned_cols=195 Identities=22% Similarity=0.292 Sum_probs=127.0
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh---
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK--- 234 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~--- 234 (419)
++|+|.+.+++.+.+.+... ...+.++||+||||||||++|++++... +.+|+.++|+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 46899999999998888653 1346789999999999999999999854 678999999876432
Q ss_pred --hhchhH----H---HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc------ccC
Q 014743 235 --YIGEGS----R---MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF------EAS 299 (419)
Q Consensus 235 --~~g~~~----~---~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~------~~~ 299 (419)
.+|... + .....|+.| .+.+||||||+.+ ....+..++.+++...-. ...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDI------------SPLMQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTC------------CHHHHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccC------------CHHHHHHHHHHHhcCEeeecCCccccc
Confidence 222211 0 112334444 3579999999995 345677778887754210 112
Q ss_pred CCeEEEEEeCCc-c------hhhHHhcCCCcee-EEEEcCCCC--HHHHHHHHHHHHhhcc----c-CCCCC---HHHHH
Q 014743 300 NKIKVLMATNRI-D------ILDQALLRPGRID-RKIEFPNPN--EESRLDILKIHSRRMN----L-MRGID---LKKIA 361 (419)
Q Consensus 300 ~~v~VI~tTn~~-~------~ld~allr~gRfd-~~I~~~~P~--~~~r~~Il~~~~~~~~----~-~~~~d---l~~la 361 (419)
.++.||+|||.. . .+++.|.. ||. ..|.+|++. .++...++..++.... . ...++ +..|.
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~ 213 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLI 213 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHH
Confidence 468899999975 1 24456666 774 446677766 4566667766654421 1 11233 34455
Q ss_pred HHcCCCCHHHHHHHHHHHHHHH
Q 014743 362 EKMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 362 ~~t~G~sgadi~~l~~~A~~~a 383 (419)
.....-+.+++.+++.+|...+
T Consensus 214 ~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 214 HYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HCCCSSHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHhC
Confidence 5442336689999998887655
No 78
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.60 E-value=7.5e-14 Score=140.12 Aligned_cols=225 Identities=16% Similarity=0.162 Sum_probs=149.1
Q ss_pred ccccCcHHHHHHHHHHh-hcccCChhHHhhcCC-CCCCeEEE--EcCCCChHHHHHHHHHhcc---------CCceEEEe
Q 014743 161 DMIGGLDQQIKEIKEVI-ELPIKHPELFESLGI-AQPKGVLL--YGPPGTGKTLLARAVAHHT---------DCTFIRVS 227 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i-~~~l~~~~~~~~~gi-~~p~~iLL--~GPpGtGKT~LakalA~~~---------~~~~i~v~ 227 (419)
+.++|.++.++.|.+.+ ..... |. ..+..++| +||||+|||+|++.+++.+ +..++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 68999999999999988 53211 11 24567899 9999999999999999865 45678888
Q ss_pred Ccch------hhhh---hc-------hh-HHHHHHHHHHHH-hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHH
Q 014743 228 GSEL------VQKY---IG-------EG-SRMVRELFVMAR-EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 289 (419)
Q Consensus 228 ~s~l------~~~~---~g-------~~-~~~i~~lf~~a~-~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~l 289 (419)
|... .... +| .. ......+..... ...|.||+|||++.+...+. .+.+....+..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~------~~~~~l~~l~~~ 167 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR------IAAEDLYTLLRV 167 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT------SCHHHHHHHHTH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC------cchHHHHHHHHH
Confidence 6432 1111 11 11 112233333332 24588999999999854210 123444444445
Q ss_pred HHHccccccC--CCeEEEEEeCCcc---hhh---HHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhccc---CCCCCHH
Q 014743 290 LNQLDGFEAS--NKIKVLMATNRID---ILD---QALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNL---MRGIDLK 358 (419)
Q Consensus 290 L~~l~~~~~~--~~v~VI~tTn~~~---~ld---~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~---~~~~dl~ 358 (419)
+..+.. .. .++.||++|+.++ .++ +.+.+ +|...+.|++++.++..+|+...+..... ..+..+.
T Consensus 168 ~~~~~~--~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 168 HEEIPS--RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp HHHSCC--TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHhccc--CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 544310 12 5788998988765 344 56666 56556999999999999999876653221 1222356
Q ss_pred HHHHHcC------CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 014743 359 KIAEKMN------GASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 359 ~la~~t~------G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~ 404 (419)
.++..+. | .+..+..+|..|...|..++...++.+++..++....
T Consensus 244 ~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 244 LISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 7788888 6 6778888999888888777777899999998887653
No 79
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.60 E-value=1.1e-14 Score=155.02 Aligned_cols=221 Identities=22% Similarity=0.295 Sum_probs=146.3
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc---eEEEeCc
Q 014743 153 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---FIRVSGS 229 (419)
Q Consensus 153 ~~~p~~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~---~i~v~~s 229 (419)
.++++..|++++|++.+++.+...+.. +..++|+||||||||++|++||+.+... .+.+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 367788899999999999998888753 3689999999999999999999976422 2222221
Q ss_pred chh--hhhhc------------------------------------------------------hhHHHHHHHHH-----
Q 014743 230 ELV--QKYIG------------------------------------------------------EGSRMVRELFV----- 248 (419)
Q Consensus 230 ~l~--~~~~g------------------------------------------------------~~~~~i~~lf~----- 248 (419)
... ...++ ........+|.
T Consensus 98 ~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~ 177 (604)
T 3k1j_A 98 PEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD 177 (604)
T ss_dssp TTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC
T ss_pred cccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec
Confidence 110 00000 00000111111
Q ss_pred ------------------HHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc--------------
Q 014743 249 ------------------MAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF-------------- 296 (419)
Q Consensus 249 ------------------~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~-------------- 296 (419)
......+.+|||||++.+ ++..+..|+++|.+..-.
T Consensus 178 ~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~ 245 (604)
T 3k1j_A 178 PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL------------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVR 245 (604)
T ss_dssp CC----CCCCGGGGEECCHHHHTTTSEEEETTGGGS------------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCB
T ss_pred hhhcCCccccccccccCceeeecCCCEEEEechhhC------------CHHHHHHHHHHHHcCcEEecccccccccccCC
Confidence 112235679999999994 467888888888753211
Q ss_pred --ccCCCeEEEEEeCCc--chhhHHhcCCCcee---EEEEcCCC---CHHHHHHHHHHHHhhcc---cCCCCC---HHHH
Q 014743 297 --EASNKIKVLMATNRI--DILDQALLRPGRID---RKIEFPNP---NEESRLDILKIHSRRMN---LMRGID---LKKI 360 (419)
Q Consensus 297 --~~~~~v~VI~tTn~~--~~ld~allr~gRfd---~~I~~~~P---~~~~r~~Il~~~~~~~~---~~~~~d---l~~l 360 (419)
....++.||+|||+. ..++++|++ ||+ ..+.|+.. +.+....+++...+... ....++ +..|
T Consensus 246 ~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~L 323 (604)
T 3k1j_A 246 TEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEI 323 (604)
T ss_dssp CSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHH
T ss_pred CCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHH
Confidence 012368899999987 689999999 996 56676543 35556666654443322 112222 3444
Q ss_pred HHHc---CCC------CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 014743 361 AEKM---NGA------SGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAK 402 (419)
Q Consensus 361 a~~t---~G~------sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~ 402 (419)
.... .|- +.+++.++++.|...|..+.+..|+.+|+..|+..
T Consensus 324 i~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 324 VREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4432 553 78999999999998898888899999999999964
No 80
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.59 E-value=8e-16 Score=177.36 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=112.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCC----------hhHHhh------cCC------------CCCCeEEEEcCCCC
Q 014743 155 VPDSTYDMIGGLDQQIKEIKEVIELPIKH----------PELFES------LGI------------AQPKGVLLYGPPGT 206 (419)
Q Consensus 155 ~p~~~~~~I~G~~~~~~~l~~~i~~~l~~----------~~~~~~------~gi------------~~p~~iLL~GPpGt 206 (419)
.+.+.|++|+|+++++..+.+.+.+|+.+ ++.|+. .|+ +.++.+|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34589999999999999999999999854 667776 333 34445999999999
Q ss_pred hHHHHHHHHHhcc---CCceEEEeCcc----hh--------hhhhch----hHHHHHHHHHHHHhhCCceEEeccccccc
Q 014743 207 GKTLLARAVAHHT---DCTFIRVSGSE----LV--------QKYIGE----GSRMVRELFVMAREHAPSIIFMDEIDSIG 267 (419)
Q Consensus 207 GKT~LakalA~~~---~~~~i~v~~s~----l~--------~~~~g~----~~~~i~~lf~~a~~~~psVl~iDEiD~l~ 267 (419)
|||+||++++.+. +.+.+.|+..+ ++ ++|+++ +++.++.+|..|+...|++||+|++|+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999865 44555555444 33 667777 89999999999999999999999999999
Q ss_pred ccccCCCC-CCCC-HHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 268 SARMESGS-GNGD-SEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 268 ~~r~~~~~-~~~~-~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
+.+...+. +..+ .-..+.+.|+|.++++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 98532111 1111 34556799999999987777888777 77765
No 81
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.58 E-value=6e-15 Score=114.90 Aligned_cols=77 Identities=82% Similarity=1.215 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 014743 331 PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 331 ~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~ 407 (419)
|+|+.++|.+||+.+++++++..++|+..||..|+||||+||.++|++|++.|++++...|+++||..|+.++..+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~~ 77 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 77 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Confidence 78999999999999999999989999999999999999999999999999999999999999999999999998653
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.58 E-value=3.2e-15 Score=129.65 Aligned_cols=132 Identities=14% Similarity=0.246 Sum_probs=96.7
Q ss_pred cccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHH
Q 014743 162 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSR 241 (419)
Q Consensus 162 ~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~ 241 (419)
+++|.+.+++.+.+.+.... ..+.++||+||||||||++|++++.... +++.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 67899999999999886531 3456799999999999999999999887 99999999876544
Q ss_pred HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc-ch----hhH
Q 014743 242 MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI-DI----LDQ 316 (419)
Q Consensus 242 ~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~-~~----ld~ 316 (419)
...+|+.+ .+.+|||||+|.+ ....+..+.++++... ..++.+|+|||.+ +. +++
T Consensus 67 -~~~~~~~a---~~~~l~lDei~~l------------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 67 -PMELLQKA---EGGVLYVGDIAQY------------SRNIQTGITFIIGKAE----RCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp -HHHHHHHT---TTSEEEEEECTTC------------CHHHHHHHHHHHHHHT----TTTCEEEEEEEECTTTC--CHHH
T ss_pred -hhhHHHhC---CCCeEEEeChHHC------------CHHHHHHHHHHHHhCC----CCCEEEEEecCCCHHHHHhCccH
Confidence 34555544 3579999999995 3556777778877652 4568899999864 22 556
Q ss_pred HhcCCCce-eEEEEcCCC
Q 014743 317 ALLRPGRI-DRKIEFPNP 333 (419)
Q Consensus 317 allr~gRf-d~~I~~~~P 333 (419)
.+.. || ...|.+|+.
T Consensus 127 ~L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 127 KLAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHHH--HSSSEEEEECCC
T ss_pred HHHH--HhcCcEEeCCCC
Confidence 6665 64 346777764
No 83
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=7.8e-15 Score=116.50 Aligned_cols=77 Identities=81% Similarity=1.181 Sum_probs=73.5
Q ss_pred cCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 014743 330 FPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 406 (419)
Q Consensus 330 ~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~ 406 (419)
-.+||.++|.+||+.+++++++..++|+..||..|+|||||||.++|++|++.|+++....|+++||+.|+.++.++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 46899999999999999999998999999999999999999999999999999999999999999999999999875
No 84
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.55 E-value=1.2e-14 Score=126.09 Aligned_cols=132 Identities=15% Similarity=0.200 Sum_probs=92.0
Q ss_pred cccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhch
Q 014743 162 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGE 238 (419)
Q Consensus 162 ~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~ 238 (419)
+++|.+.+++.+.+.+... ...+..+||+||||||||++|++++... +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 6789999999999888642 1345679999999999999999999976 67899 999887554
Q ss_pred hHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc------
Q 014743 239 GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID------ 312 (419)
Q Consensus 239 ~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~------ 312 (419)
.....+|..+ ...+|||||||.+ ....+..+.+++.. ...++.+|+|||.+-
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l------------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHL------------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGS------------CHHHHHHHHHHHHS-----SSCSSCEEEEESSCHHHHHHH
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHC------------CHHHHHHHHHHHhh-----cCCCEEEEEECCcCHHHHHHc
Confidence 1233455555 4569999999995 35567777777732 244678899999742
Q ss_pred -hhhHHhcCCCcee-EEEEcCCC
Q 014743 313 -ILDQALLRPGRID-RKIEFPNP 333 (419)
Q Consensus 313 -~ld~allr~gRfd-~~I~~~~P 333 (419)
.+++.|.. |+. ..|.+|+.
T Consensus 124 ~~~~~~L~~--rl~~~~i~lPpL 144 (145)
T 3n70_A 124 NHIIAELYY--CFAMTQIACLPL 144 (145)
T ss_dssp SCCCHHHHH--HHHHHEEECCCC
T ss_pred CCCCHHHHH--HhcCCEEeCCCC
Confidence 23334433 432 25667654
No 85
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.50 E-value=3.5e-13 Score=133.02 Aligned_cols=172 Identities=16% Similarity=0.198 Sum_probs=116.8
Q ss_pred cHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCc-----------------------
Q 014743 166 LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT----------------------- 222 (419)
Q Consensus 166 ~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~----------------------- 222 (419)
+++.++.+...+... +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 567778888877652 456789999999999999999999876432
Q ss_pred -eEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccc
Q 014743 223 -FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE 297 (419)
Q Consensus 223 -~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~ 297 (419)
++.+++.+- +. ..+...++++++.+.. ..+.|++|||+|.+. ....+.++..+.+
T Consensus 75 d~~~~~~~~~-~~--~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEe----- 134 (334)
T 1a5t_A 75 DYYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEE----- 134 (334)
T ss_dssp TEEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTS-----
T ss_pred CEEEEecccc-CC--CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcC-----
Confidence 333332200 00 1123346777776653 236799999999962 3345555555532
Q ss_pred cCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHH
Q 014743 298 ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCT 377 (419)
Q Consensus 298 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~ 377 (419)
...++++|++||.++.+.+.+++ |+. .+.|++|+.++..+++.... .+ ++..+..++..+.| +.+.+..+++
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred CCCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 35679999999999999999998 764 79999999999998887654 11 22235567777766 4444444443
No 86
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.49 E-value=7.4e-14 Score=111.35 Aligned_cols=85 Identities=41% Similarity=0.604 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhcc-hh
Q 014743 334 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK-NM 412 (419)
Q Consensus 334 ~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~~~-~~ 412 (419)
|.++|.+||+.+++++++..++|+..||..|+||||+||.++|++|++.|+++....|+++||+.|+.++.+..... ..
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~~ 81 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSST 81 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccch
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999766433 23
Q ss_pred hhHhhh
Q 014743 413 SLRKLW 418 (419)
Q Consensus 413 ~~~~~~ 418 (419)
..+..|
T Consensus 82 ~~y~~w 87 (88)
T 3vlf_B 82 SRYMQY 87 (88)
T ss_dssp ------
T ss_pred hHHhcc
Confidence 333345
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=6.1e-13 Score=129.87 Aligned_cols=142 Identities=12% Similarity=0.175 Sum_probs=106.4
Q ss_pred CcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc------CCceEEEeCcchhhhhhch
Q 014743 165 GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGSELVQKYIGE 238 (419)
Q Consensus 165 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~------~~~~i~v~~s~l~~~~~g~ 238 (419)
|++++++.|...|... . +.++|||||||+|||++|+++|+.+ ...++.++++. .. .
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--I 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--B
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--C
Confidence 7888999999988763 2 5689999999999999999999853 34677776542 01 1
Q ss_pred hHHHHHHHHHHHHhhC----CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 239 GSRMVRELFVMAREHA----PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 239 ~~~~i~~lf~~a~~~~----psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
+-..++++++.+...+ ..|+||||+|.+ ....++.|+..|.+ ...++++|++|+.++.+
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l------------t~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM------------TQQAANAFLKALEE-----PPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB------------CHHHHHHTHHHHHS-----CCTTEEEEEEESCGGGS
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh------------CHHHHHHHHHHHhC-----CCCCeEEEEEECChHhC
Confidence 2334778888776443 469999999996 23456666666654 35688999999999999
Q ss_pred hHHhcCCCceeEEEEcCCCCHHHHHHHHHHHH
Q 014743 315 DQALLRPGRIDRKIEFPNPNEESRLDILKIHS 346 (419)
Q Consensus 315 d~allr~gRfd~~I~~~~P~~~~r~~Il~~~~ 346 (419)
.|.+++ | .+.|++|+.++..+.+....
T Consensus 126 ~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 999999 7 78999999999988887665
No 88
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.44 E-value=1.5e-13 Score=108.10 Aligned_cols=75 Identities=33% Similarity=0.574 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhh
Q 014743 334 NEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 408 (419)
Q Consensus 334 ~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~~ 408 (419)
|.++|.+||+.+++++++..++|+..||..|+||||+||.++|++|++.|+++....|+++||..|+.++.|+..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 689999999999999998889999999999999999999999999999999998899999999999999998766
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.43 E-value=4.3e-13 Score=119.99 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=87.2
Q ss_pred cCCCCCcccccC----cHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc----CCceEE
Q 014743 154 KVPDSTYDMIGG----LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIR 225 (419)
Q Consensus 154 ~~p~~~~~~I~G----~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~----~~~~i~ 225 (419)
+..+.+|+++.+ +..+++.+.+++. ++.+..+.+++|+||||||||+|++++++.+ +..++.
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 345667788765 4445555555443 3445668899999999999999999999876 556677
Q ss_pred EeCcchhhhhhchhHHH-HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEE
Q 014743 226 VSGSELVQKYIGEGSRM-VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 304 (419)
Q Consensus 226 v~~s~l~~~~~g~~~~~-i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~V 304 (419)
++..++...+....... ...++. ....|.+|+|||++.. +.++.....+.++++... ..+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~----------~~~~~~~~~l~~ll~~~~----~~~~~i 136 (180)
T 3ec2_A 73 FDTKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSE----------RLSDWQRELISYIITYRY----NNLKST 136 (180)
T ss_dssp EEHHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSS----------CCCHHHHHHHHHHHHHHH----HTTCEE
T ss_pred EEHHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCC----------cCCHHHHHHHHHHHHHHH----HcCCCE
Confidence 77777765543221110 012222 2336889999998753 255667777888887652 245678
Q ss_pred EEEeCCcc
Q 014743 305 LMATNRID 312 (419)
Q Consensus 305 I~tTn~~~ 312 (419)
|+|||.+.
T Consensus 137 i~tsn~~~ 144 (180)
T 3ec2_A 137 IITTNYSL 144 (180)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCh
Confidence 88888764
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.31 E-value=1.5e-11 Score=147.59 Aligned_cols=141 Identities=18% Similarity=0.301 Sum_probs=99.1
Q ss_pred CCCCeEEEEcCCCChHHHHH-HHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHH---------------hhCCc
Q 014743 193 AQPKGVLLYGPPGTGKTLLA-RAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR---------------EHAPS 256 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~La-kalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~---------------~~~ps 256 (419)
..++++||+||||||||++| ++++...+..++.++++...+. ..+...++... ...++
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 34689999999999999999 5555555777888888764332 23333343321 11236
Q ss_pred eEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC-------CCeEEEEEeCCcc-----hhhHHhcCCCce
Q 014743 257 IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS-------NKIKVLMATNRID-----ILDQALLRPGRI 324 (419)
Q Consensus 257 Vl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~-------~~v~VI~tTn~~~-----~ld~allr~gRf 324 (419)
||||||++.-...+ .+.......+.|+++...-++.. .++.+|+|||.+. .++++|+| ||
T Consensus 1339 VlFiDEinmp~~d~------yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf 1410 (2695)
T 4akg_A 1339 VLFCDEINLPKLDK------YGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA 1410 (2695)
T ss_dssp EEEEETTTCSCCCS------SSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE
T ss_pred EEEecccccccccc------cCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee
Confidence 99999998743322 12334566777877543212211 2689999999984 89999999 99
Q ss_pred eEEEEcCCCCHHHHHHHHHHHHhh
Q 014743 325 DRKIEFPNPNEESRLDILKIHSRR 348 (419)
Q Consensus 325 d~~I~~~~P~~~~r~~Il~~~~~~ 348 (419)
..+.++.|+.+++..|+..+++.
T Consensus 1411 -~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1411 -AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp -EEEECCCCTTTHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999987754
No 91
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.31 E-value=4.9e-13 Score=105.07 Aligned_cols=70 Identities=31% Similarity=0.382 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 014743 336 ESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 336 ~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~ 405 (419)
++|.+||+.+++++++..++|+..||..|+||||+||.++|++|++.|+++....|+++||..|+.++..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~ 70 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVK 70 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHc
Confidence 4789999999999998889999999999999999999999999999999999999999999999999964
No 92
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.22 E-value=3.5e-12 Score=105.40 Aligned_cols=100 Identities=31% Similarity=0.499 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCCccccccCCCCCeeeecCCce
Q 014743 54 LNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSY 133 (419)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (419)
.+.+.++++.++++++.++++++.++.+|..+|++.+.++++.++++..++++|++++.+.++.+.|+||++|+++.+++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~ 88 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTL 88 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcce
Confidence 44566677788889999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred eEeecCCCCccccccccccc
Q 014743 134 VLHLILPSKVDPLVNLMKVE 153 (419)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ 153 (419)
.+..++|.+.||.++.|.++
T Consensus 89 ~Iv~iLp~e~Dp~V~~M~ve 108 (109)
T 2wg5_A 89 AIVNVLPTSKDPMVYGFEVE 108 (109)
T ss_dssp CEEEEEC-------------
T ss_pred EeEEeCCCCcCccchheEec
Confidence 99999999999999988764
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.18 E-value=2.2e-09 Score=104.83 Aligned_cols=187 Identities=17% Similarity=0.219 Sum_probs=118.9
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh-----
Q 014743 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV----- 232 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~----- 232 (419)
.....+.|.++.++.|.+ +.. ..++++||+|+|||+|++.+++.....++.+++....
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 344678999999999988 531 4789999999999999999999876667777765420
Q ss_pred --hhh-------hc--------------------------h------hHHHHHHHHHHHHhh--CCceEEeccccccccc
Q 014743 233 --QKY-------IG--------------------------E------GSRMVRELFVMAREH--APSIIFMDEIDSIGSA 269 (419)
Q Consensus 233 --~~~-------~g--------------------------~------~~~~i~~lf~~a~~~--~psVl~iDEiD~l~~~ 269 (419)
... +. . ....+..+++..... .|.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 000 00 0 011244555555443 3889999999997531
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHh--c-----CCCceeEEEEcCCCCHHHHHHHH
Q 014743 270 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQAL--L-----RPGRIDRKIEFPNPNEESRLDIL 342 (419)
Q Consensus 270 r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~al--l-----r~gRfd~~I~~~~P~~~~r~~Il 342 (419)
. ..++...+..+.+.. .++.+|+|++....+...+ . -.||+...+.+++++.++..+++
T Consensus 153 ~--------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 153 R--------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp T--------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred C--------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 0 112233333343322 3677888887654333220 1 12466678999999999999999
Q ss_pred HHHHhhcccCCCCCHHHHHHHcCCCCHHHHHHHHH
Q 014743 343 KIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCT 377 (419)
Q Consensus 343 ~~~~~~~~~~~~~dl~~la~~t~G~sgadi~~l~~ 377 (419)
...+.......+ +...+...|.|+. .-+..++.
T Consensus 219 ~~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~ 251 (357)
T 2fna_A 219 RRGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGF 251 (357)
T ss_dssp HHHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHH
T ss_pred HHHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHH
Confidence 876654333222 2478888898854 44555544
No 94
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.16 E-value=3e-10 Score=114.32 Aligned_cols=210 Identities=21% Similarity=0.273 Sum_probs=132.0
Q ss_pred cccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh--
Q 014743 160 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK-- 234 (419)
Q Consensus 160 ~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~-- 234 (419)
+..+.|.....+++.+.+..- ......++++|++|||||++|+++.... +.+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 356778777777777776541 0234568999999999999999998765 478999999876432
Q ss_pred ---hhchhHH-------HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccc------cc
Q 014743 235 ---YIGEGSR-------MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF------EA 298 (419)
Q Consensus 235 ---~~g~~~~-------~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~------~~ 298 (419)
.+|...+ ....+|+.|. ..+||||||+.+ +...+..++++|++..-. ..
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l------------~~~~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGEL------------SLEAQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGC------------CHHHHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhC------------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 2222111 0113444443 359999999994 577889999999874211 11
Q ss_pred CCCeEEEEEeCCcc-------hhhHHhcCCCce-eEEEEcCCCCH--HHHHHHHHHHHhhc----ccC-CCCCHHHHHHH
Q 014743 299 SNKIKVLMATNRID-------ILDQALLRPGRI-DRKIEFPNPNE--ESRLDILKIHSRRM----NLM-RGIDLKKIAEK 363 (419)
Q Consensus 299 ~~~v~VI~tTn~~~-------~ld~allr~gRf-d~~I~~~~P~~--~~r~~Il~~~~~~~----~~~-~~~dl~~la~~ 363 (419)
..++.||+|||..- .+.+.|.. |+ ...|.+|+... ++...++..++... ... ..++-..+...
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l 347 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELL 347 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHH
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 23788999999731 22333333 44 34567776643 56666666665543 211 12333333332
Q ss_pred c-CCC--CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014743 364 M-NGA--SGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 400 (419)
Q Consensus 364 t-~G~--sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al 400 (419)
. ..| +.++|++++.+|...+ ....|+.+|+...+
T Consensus 348 ~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 348 LSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 2 233 4479999999988765 44578888886543
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.14 E-value=4.9e-09 Score=102.14 Aligned_cols=190 Identities=21% Similarity=0.259 Sum_probs=117.6
Q ss_pred CcccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh------
Q 014743 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV------ 232 (419)
Q Consensus 159 ~~~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~------ 232 (419)
.-..+.|.++.++.|.+.+.. +..++++||+|+|||+|++.+++..+ .+.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 336789999999999988753 26899999999999999999998875 6666654321
Q ss_pred ------h---hhhch---------------------hHHHHHHHHH----HHHhhCCceEEecccccccccccCCCCCCC
Q 014743 233 ------Q---KYIGE---------------------GSRMVRELFV----MAREHAPSIIFMDEIDSIGSARMESGSGNG 278 (419)
Q Consensus 233 ------~---~~~g~---------------------~~~~i~~lf~----~a~~~~psVl~iDEiD~l~~~r~~~~~~~~ 278 (419)
. ..++. ....+..++. .+....|.+|+|||++.+.... ...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~-----~~~ 147 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG-----SRG 147 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT-----TTT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC-----ccc
Confidence 0 00000 0011223332 2333348999999999975311 012
Q ss_pred CHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHh--c-----CCCceeEEEEcCCCCHHHHHHHHHHHHhhccc
Q 014743 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQAL--L-----RPGRIDRKIEFPNPNEESRLDILKIHSRRMNL 351 (419)
Q Consensus 279 ~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~al--l-----r~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~ 351 (419)
.......+..+++.. .++.+|+|++....+...+ . -.||+...+.+++.+.++-.+++...+.....
T Consensus 148 ~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 148 GKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp THHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred hhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 344455555554432 4677888876543333210 0 12466778999999999999999876654332
Q ss_pred C-CCCCHHHHHHHcCCCCHHHHHHHHH
Q 014743 352 M-RGIDLKKIAEKMNGASGAELKAVCT 377 (419)
Q Consensus 352 ~-~~~dl~~la~~t~G~sgadi~~l~~ 377 (419)
. ....+..+...|.|+- .-+..++.
T Consensus 222 ~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 222 DVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp CCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 1 2223567778888854 44555543
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.11 E-value=7.5e-11 Score=102.97 Aligned_cols=105 Identities=16% Similarity=0.295 Sum_probs=71.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 270 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r 270 (419)
++..++|+||+|+|||+|++++++.+ +...+.+++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~--- 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG--- 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC---
Confidence 56789999999999999999999876 555888888776544 112358899999988742
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC-cchhh--HHhcCCCceeEEEEc
Q 014743 271 MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR-IDILD--QALLRPGRIDRKIEF 330 (419)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~-~~~ld--~allr~gRfd~~I~~ 330 (419)
... +..+.++++.+. ..+..++|+|||. +..+. +.+.+ |+..-..+
T Consensus 97 --------~~~-~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 97 --------NEE-QALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp --------SHH-HHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred --------hHH-HHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 122 666777777653 2233336667774 44332 77777 77544433
No 97
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.11 E-value=9.3e-11 Score=106.46 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=63.0
Q ss_pred CCCcccccCcH----HHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCc
Q 014743 157 DSTYDMIGGLD----QQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS 229 (419)
Q Consensus 157 ~~~~~~I~G~~----~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s 229 (419)
..+|+++.+.+ .+++.+.+++...-. ...+.+++|+||||||||+++++++..+ +..++.++++
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP---------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS---------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 45778877644 344555555543200 0134789999999999999999999876 5678888888
Q ss_pred chhhhhhchh-HHHHHHHHHHHHhhCCceEEecccccc
Q 014743 230 ELVQKYIGEG-SRMVRELFVMAREHAPSIIFMDEIDSI 266 (419)
Q Consensus 230 ~l~~~~~g~~-~~~i~~lf~~a~~~~psVl~iDEiD~l 266 (419)
++...+.... ...+..++.... .+.+|+|||++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 7765443211 111223333333 3469999999774
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.07 E-value=4.1e-11 Score=117.02 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=71.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccc
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 268 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~ 268 (419)
|+.++..++|+||||||||+|+.++|...+ +.|+.+...+.++.+....+..+..+++.+.... +|+||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 556677789999999999999999998644 3466663344444444445556666666666554 999999999865
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC
Q 014743 269 ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 310 (419)
Q Consensus 269 ~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~ 310 (419)
...+.+..+ ...+.+.+++..+.++....++.+|++||.
T Consensus 197 ~~~~~s~~G---~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 197 AAGGNTTSG---GISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred ccccccccc---hHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 543211111 122334555555554445567889999984
No 99
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.03 E-value=2e-09 Score=109.80 Aligned_cols=216 Identities=18% Similarity=0.123 Sum_probs=127.1
Q ss_pred ccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHH-HhccCCceEEEeC--c---chhhhhh
Q 014743 163 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV-AHHTDCTFIRVSG--S---ELVQKYI 236 (419)
Q Consensus 163 I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~Lakal-A~~~~~~~i~v~~--s---~l~~~~~ 236 (419)
|.|++.+++.|.=++...-. . +...-++||.|+||| ||++|+++ +..+....+ +.+ + .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~--k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVG--K------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCS--S------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCcc--c------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEE
Confidence 77777766665554432100 0 122237999999999 99999999 765533222 211 1 1111000
Q ss_pred chhHH-HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcc----ccccCCCeEEEEEeCCc
Q 014743 237 GEGSR-MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD----GFEASNKIKVLMATNRI 311 (419)
Q Consensus 237 g~~~~-~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~----~~~~~~~v~VI~tTn~~ 311 (419)
+.+.. .-.-.+..|. -.|+|+|||+. ..+..+..|++.|.+.. |..-..++.||+|+|..
T Consensus 285 ~~tG~~~~~G~l~LAd---gGvl~lDEIn~------------~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 285 EDRGWALRAGAAVLAD---GGILAVDHLEG------------APEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp ESSSEEEEECHHHHTT---TSEEEEECCTT------------CCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred cCCCcccCCCeeEEcC---CCeeehHhhhh------------CCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 00000 0001122232 35999999988 45778888999888632 22223478899999986
Q ss_pred c-----------hhhHHhcCCCceeEEEE-cCCCCHHH-------------HHHHHHHHHh----hcccCCCCCHHHHH-
Q 014743 312 D-----------ILDQALLRPGRIDRKIE-FPNPNEES-------------RLDILKIHSR----RMNLMRGIDLKKIA- 361 (419)
Q Consensus 312 ~-----------~ld~allr~gRfd~~I~-~~~P~~~~-------------r~~Il~~~~~----~~~~~~~~dl~~la- 361 (419)
. .|+++++. |||-.+. +..|+.+. ..+.+. +.+ ...+.+++ ...|.
T Consensus 350 ~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea-~~yI~~ 425 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEA-RKRLEH 425 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHH-HHHHHH
T ss_pred cccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHH-HHHHHH
Confidence 5 78889999 9986554 44554332 222221 222 11111111 11111
Q ss_pred ----H------------HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 014743 362 ----E------------KMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 407 (419)
Q Consensus 362 ----~------------~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v~~~~ 407 (419)
. ..-|.|++.+.+|++-|...|..+.+..|+.+|+..|+.-+..+-
T Consensus 426 ~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl 487 (506)
T 3f8t_A 426 WYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYL 487 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHH
Confidence 0 134889999999999999999999999999999999998776544
No 100
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.99 E-value=1.5e-09 Score=108.44 Aligned_cols=195 Identities=21% Similarity=0.280 Sum_probs=119.4
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCC--ceEEEeCcchhhh----
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGSELVQK---- 234 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~--~~i~v~~s~l~~~---- 234 (419)
..++|......++.+.+... . .....+|++|++||||+++|+++....+. .|+.++|+.+-..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-------a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-------A----KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-------H----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhh-------h----ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 45778877777777666431 0 23456999999999999999999876532 3999999865322
Q ss_pred -hhchhHHH-------HHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHcccccc------CC
Q 014743 235 -YIGEGSRM-------VRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA------SN 300 (419)
Q Consensus 235 -~~g~~~~~-------i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~------~~ 300 (419)
.+|+..+. -...|+.|. ...||||||+.+ +...+..|+++|++..-... .-
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGEL------------DQRVQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGS------------CHHHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred HhcCccccccCCcccccCChHhhcC---CCeEEecChhhC------------CHHHHHHHHHHHHhCCcccCCCCcceee
Confidence 22321110 112455443 348999999994 57788899999986432111 12
Q ss_pred CeEEEEEeCCcc-------hhhHHhcCCCcee-EEEEcCCCCH--HHHHHHHHHHHhhccc----C-CCCCHHH---HHH
Q 014743 301 KIKVLMATNRID-------ILDQALLRPGRID-RKIEFPNPNE--ESRLDILKIHSRRMNL----M-RGIDLKK---IAE 362 (419)
Q Consensus 301 ~v~VI~tTn~~~-------~ld~allr~gRfd-~~I~~~~P~~--~~r~~Il~~~~~~~~~----~-~~~dl~~---la~ 362 (419)
++.+|+|||..- .+.+.|.. |+. ..|.+|+... ++...++..++..... . ..++-+. |..
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK 340 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 678999999531 12223333 443 3578888765 6777777766654321 1 2233333 333
Q ss_pred HcCCCCHHHHHHHHHHHHHHH
Q 014743 363 KMNGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 363 ~t~G~sgadi~~l~~~A~~~a 383 (419)
....-+.+++++++.+|...+
T Consensus 341 ~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 341 QEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCCTTHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHHHHHhC
Confidence 332224588888888876544
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.92 E-value=6.7e-10 Score=108.40 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=61.3
Q ss_pred CCCcccccCcH----HHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC----CceEEEeC
Q 014743 157 DSTYDMIGGLD----QQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD----CTFIRVSG 228 (419)
Q Consensus 157 ~~~~~~I~G~~----~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~----~~~i~v~~ 228 (419)
+.+|+++.+-. .+++.+.+++... +-.++.+++|+||||||||+||+++|.++. ..++.+.+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY----------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC----------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc----------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 35778877533 3444555555431 112368999999999999999999998653 67888888
Q ss_pred cchhhhhhch-hHHHHHHHHHHHHhhCCceEEecccccc
Q 014743 229 SELVQKYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSI 266 (419)
Q Consensus 229 s~l~~~~~g~-~~~~i~~lf~~a~~~~psVl~iDEiD~l 266 (419)
++++..+... ..+.+..++... ..+.+|+|||++..
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred HHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 8776654332 111122222222 24569999999764
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.89 E-value=6.8e-08 Score=116.35 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=112.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESG 274 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~ 274 (419)
..+.++.||+|||||++++++|+.++.+++.++|++-+.. ..+..+|..+... .++++|||++.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr--------- 708 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNR--------- 708 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTS---------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhh---------
Confidence 4678999999999999999999999999999999875432 3345667666554 37999999988
Q ss_pred CCCCCHHHHHHHHHHHHHccc---------------cccCCCeEEEEEeCC----cchhhHHhcCCCceeEEEEcCCCCH
Q 014743 275 SGNGDSEVQRTMLELLNQLDG---------------FEASNKIKVLMATNR----IDILDQALLRPGRIDRKIEFPNPNE 335 (419)
Q Consensus 275 ~~~~~~~~~~~l~~lL~~l~~---------------~~~~~~v~VI~tTn~----~~~ld~allr~gRfd~~I~~~~P~~ 335 (419)
.++++...+.+.+..+.. +.-..+..|++|.|. ...+++++.+ || +.+.+..||.
T Consensus 709 ---~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~ 782 (2695)
T 4akg_A 709 ---LDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQS 782 (2695)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCH
T ss_pred ---cChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCH
Confidence 456677766555443211 112235678888883 3578999988 88 5799999999
Q ss_pred HHHHHHHHHHHhhcccCCC-----CCH-HHHHHHc-----CCCCHHHHHHHHHHHHHHH
Q 014743 336 ESRLDILKIHSRRMNLMRG-----IDL-KKIAEKM-----NGASGAELKAVCTEAGMFA 383 (419)
Q Consensus 336 ~~r~~Il~~~~~~~~~~~~-----~dl-~~la~~t-----~G~sgadi~~l~~~A~~~a 383 (419)
+...+|+-.. ..+..... +.+ ..+.++. ..|+-+.++.+++.|+...
T Consensus 783 ~~i~ei~l~s-~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 783 GTIAEMILQI-MGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHHHHHH-HHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 9888885322 11110000 001 1111111 2477899999888776543
No 103
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.87 E-value=1.1e-09 Score=109.78 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=78.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccc-
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS- 268 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~- 268 (419)
++++++..++|+|||||||||++++|++..+..++.+..++-... ..+. ...+..++|+||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~------~~lg------~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLN------FELG------VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHH------HHHG------GGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHH------HHHH------HhcchhHHHHHHHHHHHHH
Confidence 478889999999999999999999999987666554433321000 0111 122446789999999875
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCC
Q 014743 269 ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN 332 (419)
Q Consensus 269 ~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~ 332 (419)
.|.-. ...... ....+.+.++ +++.|+++||+++.+ +++++|||++..++..+
T Consensus 232 ~r~l~---~~~~~~--~~~~l~~~ld-----G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP---SGQGIN--NLDNLRDYLD-----GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC---CCSHHH--HHHTTHHHHH-----CSSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc---ccCcch--HHHHHHHHhc-----CCCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22110 111111 1122333333 346789999999999 78999999998776654
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.86 E-value=1.3e-08 Score=91.27 Aligned_cols=122 Identities=17% Similarity=0.250 Sum_probs=71.8
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc---------------------------------hhhhhhchhHHHH
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE---------------------------------LVQKYIGEGSRMV 243 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~---------------------------------l~~~~~g~~~~~i 243 (419)
.+.|.||+|+|||||++.|++.++..+.-....+ ...++++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 5789999999999999999987643322111110 1223333344444
Q ss_pred HHHHHHH-------HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC---Ccch
Q 014743 244 RELFVMA-------REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN---RIDI 313 (419)
Q Consensus 244 ~~lf~~a-------~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn---~~~~ 313 (419)
++.+..| ....|.++++||++.. ++.++...+.+.+++.. .+..+|++|| ..+.
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~---------~~ld~~~~~~l~~~l~~-------~~~~~i~~~H~~h~~~~ 145 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKM---------ELFSKKFRDLVRQIMHD-------PNVNVVATIPIRDVHPL 145 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTT---------GGGCHHHHHHHHHHHTC-------TTSEEEEECCSSCCSHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCc---------ccCCHHHHHHHHHHHhc-------CCCeEEEEEccCCCchH
Confidence 4443333 4578999999997542 23567777777777643 2454666664 4334
Q ss_pred hhHHhcCCCce-eEEEEcCCCCHHH
Q 014743 314 LDQALLRPGRI-DRKIEFPNPNEES 337 (419)
Q Consensus 314 ld~allr~gRf-d~~I~~~~P~~~~ 337 (419)
++ .+.+ |- .+++++...+.++
T Consensus 146 ~~-~i~~--r~~~~i~~~~~~~r~~ 167 (178)
T 1ye8_A 146 VK-EIRR--LPGAVLIELTPENRDV 167 (178)
T ss_dssp HH-HHHT--CTTCEEEECCTTTTTT
T ss_pred HH-HHHh--cCCcEEEEecCcCHHH
Confidence 43 4444 32 2456777666433
No 105
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.85 E-value=6.9e-09 Score=103.87 Aligned_cols=121 Identities=21% Similarity=0.226 Sum_probs=80.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch------------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL------------------------------------ 231 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l------------------------------------ 231 (419)
+.+.++..+.|.||+|||||||+|+||+.. ...-+.+++.++
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~ 103 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc
Confidence 456778889999999999999999999843 223344333211
Q ss_pred -----------------------hhhhhchhHHHHHHHH--HHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHH
Q 014743 232 -----------------------VQKYIGEGSRMVRELF--VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 286 (419)
Q Consensus 232 -----------------------~~~~~g~~~~~i~~lf--~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l 286 (419)
..+++.+.++..++.. ..|....|.||++|| |+++.|+..+..+
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE-----------Pts~LD~~~~~~l 172 (381)
T 3rlf_A 104 GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE-----------PLSNLDAALRVQM 172 (381)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES-----------TTTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CCcCCCHHHHHHH
Confidence 1112233333333333 344457899999999 7888999998888
Q ss_pred HHHHHHccccccCCCeEEEEEeCCcchhhH-----HhcCCCce
Q 014743 287 LELLNQLDGFEASNKIKVLMATNRIDILDQ-----ALLRPGRI 324 (419)
Q Consensus 287 ~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~-----allr~gRf 324 (419)
..+|..+. ...++.+|++||+.+.+-. .+++.||+
T Consensus 173 ~~~l~~l~---~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 173 RIEISRLH---KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp HHHHHHHH---HHHCCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHH---HhCCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 88887763 2336789999999876543 24455554
No 106
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.84 E-value=1.1e-08 Score=97.85 Aligned_cols=114 Identities=25% Similarity=0.267 Sum_probs=77.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~---------------------------------- 232 (419)
++.+.++..+.|.||+|+|||||+++|++.. ...-+.+++.++.
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGR 110 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGG
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhh
Confidence 3456778889999999999999999999743 2233444332110
Q ss_pred -------------------------hhhhchhHHHHHHH--HHHHHhh------CCceEEecccccccccccCCCCCCCC
Q 014743 233 -------------------------QKYIGEGSRMVREL--FVMAREH------APSIIFMDEIDSIGSARMESGSGNGD 279 (419)
Q Consensus 233 -------------------------~~~~g~~~~~i~~l--f~~a~~~------~psVl~iDEiD~l~~~r~~~~~~~~~ 279 (419)
.++++..+++.++. +..|... .|.||++|| |+++.|
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDE-----------Pts~LD 179 (266)
T 4g1u_C 111 APYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDE-----------PTSALD 179 (266)
T ss_dssp TTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECC-----------CCSSCC
T ss_pred hhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC-----------ccccCC
Confidence 01122222333333 3344456 899999999 788899
Q ss_pred HHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 280 ~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
+.....+.+++..+. ..++..||++||+.+.+..
T Consensus 180 ~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~~~~~ 213 (266)
T 4g1u_C 180 LYHQQHTLRLLRQLT---RQEPLAVCCVLHDLNLAAL 213 (266)
T ss_dssp HHHHHHHHHHHHHHH---HHSSEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HcCCCEEEEEEcCHHHHHH
Confidence 999999999988773 3356789999999876543
No 107
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.82 E-value=9.2e-09 Score=94.06 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhc--------cC-CceEEEeCcchhhhhh----------c---h--hHHHHHHHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHH--------TD-CTFIRVSGSELVQKYI----------G---E--GSRMVRELFVMA 250 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~--------~~-~~~i~v~~s~l~~~~~----------g---~--~~~~i~~lf~~a 250 (419)
+..+|++|+||||||++|..++.. .+ .+++..+..++.-.++ . + ....+..++..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 457899999999999999886433 23 5555555554432221 1 1 11222222211
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEc
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEF 330 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~ 330 (419)
....++||+|||++.+.+.+.+. .... .++..+.. ....+.-||++|+.++.++..++. |++..+++
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~---~e~~-------rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l 150 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAG---SKIP-------ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHI 150 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTT---CCCC-------HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEE
T ss_pred cccCceEEEEEChhhhccCcccc---chhH-------HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEE
Confidence 23447899999999997665321 1111 23333332 234567889999999999999988 99999999
Q ss_pred CCCCH
Q 014743 331 PNPNE 335 (419)
Q Consensus 331 ~~P~~ 335 (419)
++|..
T Consensus 151 ~~~~~ 155 (199)
T 2r2a_A 151 ASNKM 155 (199)
T ss_dssp EECSS
T ss_pred cCccc
Confidence 88643
No 108
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.80 E-value=1.6e-08 Score=97.03 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=75.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch-------------------------h---------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL-------------------------V--------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l-------------------------~--------- 232 (419)
++.+.++..+.|.||+|+|||||+++|++.. ...-+.+++.++ .
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~ 107 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVS 107 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHH
Confidence 3456778889999999999999999999754 222333333211 0
Q ss_pred ------------------------------hhhhchhHHHHH--HHHHHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 233 ------------------------------QKYIGEGSRMVR--ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 233 ------------------------------~~~~g~~~~~i~--~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.++++..+++.+ -.+..|....|.||++|| |+++.|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDE-----------Pts~LD~ 176 (275)
T 3gfo_A 108 FGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDE-----------PTAGLDP 176 (275)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEEC-----------TTTTCCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccCCH
Confidence 001111112222 223334457899999999 7888999
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.....+.+++..+. ...+..||++||+.+.+.
T Consensus 177 ~~~~~i~~~l~~l~---~~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 177 MGVSEIMKLLVEMQ---KELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHHHHHHHHH---HHHCCEEEEEESCCSSGG
T ss_pred HHHHHHHHHHHHHH---hhCCCEEEEEecCHHHHH
Confidence 99999999998773 122678999999988664
No 109
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.79 E-value=2.3e-08 Score=94.92 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=73.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh--------------------h------------h
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV--------------------Q------------K 234 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~--------------------~------------~ 234 (419)
++.+.++..+.|.||+|+|||||+++|++.. ...-+.+++.++. . .
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 114 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 114 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHH
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHH
Confidence 3456778889999999999999999999854 2233444332110 0 0
Q ss_pred ----------------------------hhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHH
Q 014743 235 ----------------------------YIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQR 284 (419)
Q Consensus 235 ----------------------------~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~ 284 (419)
+++..++.. +-.+..|....|.||++|| |+++.|+....
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE-----------Pts~LD~~~~~ 183 (256)
T 1vpl_A 115 FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE-----------PTSGLDVLNAR 183 (256)
T ss_dssp HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTCCHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CccccCHHHHH
Confidence 000111111 1222233446799999999 77889999999
Q ss_pred HHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 285 TMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 285 ~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.+.++|..+. ..+..||++||+++.+.
T Consensus 184 ~l~~~l~~l~----~~g~tiiivtHd~~~~~ 210 (256)
T 1vpl_A 184 EVRKILKQAS----QEGLTILVSSHNMLEVE 210 (256)
T ss_dssp HHHHHHHHHH----HTTCEEEEEECCHHHHT
T ss_pred HHHHHHHHHH----hCCCEEEEEcCCHHHHH
Confidence 9999998873 23677899999876543
No 110
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.78 E-value=2.1e-08 Score=99.84 Aligned_cols=114 Identities=24% Similarity=0.356 Sum_probs=78.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch-----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------------------- 231 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l----------------------------------- 231 (419)
++.+.++..+.|.||+|+|||||+|+|+... ...-+.+++.++
T Consensus 48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~ 127 (366)
T 3tui_C 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA 127 (366)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHH
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHH
Confidence 3456788889999999999999999999743 223344433211
Q ss_pred -----------------------------hhhhhchhHHHHHHHHH--HHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 232 -----------------------------VQKYIGEGSRMVRELFV--MAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 232 -----------------------------~~~~~g~~~~~i~~lf~--~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
..+|+++.++..++... .|....|.||++|| |+++.|+
T Consensus 128 ~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDE-----------PTs~LD~ 196 (366)
T 3tui_C 128 LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQ-----------ATSALDP 196 (366)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEES-----------TTTTSCH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCccCCH
Confidence 01122222233333333 33346799999999 7888999
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
.....+.++|..+. ...++.||++||+.+.+..
T Consensus 197 ~~~~~i~~lL~~l~---~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 197 ATTRSILELLKDIN---RRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHHHHHHHH---HHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHHH---HhCCCEEEEEecCHHHHHH
Confidence 99999999998873 2347889999999876543
No 111
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.77 E-value=2.5e-08 Score=116.84 Aligned_cols=124 Identities=21% Similarity=0.284 Sum_probs=84.5
Q ss_pred ChhHHhhcC---CCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh----hhhhc------------hhH
Q 014743 183 HPELFESLG---IAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV----QKYIG------------EGS 240 (419)
Q Consensus 183 ~~~~~~~~g---i~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~----~~~~g------------~~~ 240 (419)
.+++-..+| ++++.+++|+||||||||+||.+++.+. +.....++..+.+ .+..| ..+
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E 1491 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 1491 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHH
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHH
Confidence 455555566 8899999999999999999999998754 4445555544321 22222 345
Q ss_pred HHHHHHHHHHHhhCCceEEecccccccccc---cCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEE
Q 014743 241 RMVRELFVMAREHAPSIIFMDEIDSIGSAR---MESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 307 (419)
Q Consensus 241 ~~i~~lf~~a~~~~psVl~iDEiD~l~~~r---~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~t 307 (419)
..++.++..++..+|++|+||+++.+.+.+ ++.+++ ....-.+.+.++|.++.+.....+++||+|
T Consensus 1492 ~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~-~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1492 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDS-HMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCC-CTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcChhHhccccccccccccc-ccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 667778888899999999999999988753 211111 111134667777877777667777765554
No 112
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.77 E-value=2.5e-08 Score=99.15 Aligned_cols=113 Identities=23% Similarity=0.257 Sum_probs=74.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch-----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL----------------------------------- 231 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l----------------------------------- 231 (419)
++.+.++..+.|.||+|||||||+|+||+.. ...-+.+++.++
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~ 103 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAY 103 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHH
Confidence 3456778889999999999999999999843 222333332211
Q ss_pred ----------------------------hhhhhchhHHHHHHHH--HHHHhhCCceEEecccccccccccCCCCCCCCHH
Q 014743 232 ----------------------------VQKYIGEGSRMVRELF--VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 232 ----------------------------~~~~~g~~~~~i~~lf--~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
..+++++.++..++.. ..|....|.||++|| |.++.|+.
T Consensus 104 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE-----------Pts~LD~~ 172 (359)
T 3fvq_A 104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE-----------PFSALDEQ 172 (359)
T ss_dssp TSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTSCHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHH
Confidence 0112223233333333 334457899999999 77889998
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.+..+...+..+. ...++.||++||+.+.+-
T Consensus 173 ~r~~l~~~l~~~~---~~~g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 173 LRRQIREDMIAAL---RANGKSAVFVSHDREEAL 203 (359)
T ss_dssp HHHHHHHHHHHHH---HHTTCEEEEECCCHHHHH
T ss_pred HHHHHHHHHHHHH---HhCCCEEEEEeCCHHHHH
Confidence 8888876555442 234688999999987653
No 113
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.74 E-value=2.9e-08 Score=98.72 Aligned_cols=112 Identities=19% Similarity=0.162 Sum_probs=74.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch------------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL------------------------------------ 231 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l------------------------------------ 231 (419)
+.+.++..+.|.||+|||||||+|+||+.. ...-+.+++.++
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR 103 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 446777889999999999999999999753 223333333111
Q ss_pred -----------------------hhhhhchhHHHHHH--HHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHH
Q 014743 232 -----------------------VQKYIGEGSRMVRE--LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 286 (419)
Q Consensus 232 -----------------------~~~~~g~~~~~i~~--lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l 286 (419)
..+++++.++..++ .+..|....|.||++|| |.++.|+..+..+
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE-----------P~s~LD~~~r~~l 172 (359)
T 2yyz_A 104 RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE-----------PLSNLDANLRMIM 172 (359)
T ss_dssp CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-----------CcccCCHHHHHHH
Confidence 00111122222222 33334457899999999 7788999999989
Q ss_pred HHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 287 LELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 287 ~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.++|..+. ...+..+|++||+.+.+.
T Consensus 173 ~~~l~~l~---~~~g~tvi~vTHd~~~~~ 198 (359)
T 2yyz_A 173 RAEIKHLQ---QELGITSVYVTHDQAEAM 198 (359)
T ss_dssp HHHHHHHH---HHHCCEEEEEESCHHHHH
T ss_pred HHHHHHHH---HhcCCEEEEEcCCHHHHH
Confidence 88887763 223678999999977653
No 114
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.74 E-value=3.1e-08 Score=92.82 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=40.6
Q ss_pred HHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 248 VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 248 ~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
..|....|.||++|| |+++.|+.....+.+++..+. ...+..||++||+++
T Consensus 157 Aral~~~p~llllDE-----------Pts~LD~~~~~~i~~~l~~l~---~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 157 ARALANNPPIILADQ-----------PTWALDSKTGEKIMQLLKKLN---EEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHTTCCSEEEEES-----------TTTTSCHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHHHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEcCCHH
Confidence 334457799999999 788899999999999988773 223678999999976
No 115
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.74 E-value=2.5e-08 Score=92.73 Aligned_cols=47 Identities=21% Similarity=0.504 Sum_probs=38.5
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
...|.++++|| |+++.|+.....+.+++..+. .. +..||++||+.+.
T Consensus 156 ~~~p~lllLDE-----------Pt~~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 156 ANEPILLFADE-----------PTGNLDSANTKRVMDIFLKIN---EG-GTSIVMVTHEREL 202 (224)
T ss_dssp TTCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHH
T ss_pred HcCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHHH
Confidence 46799999999 778899999999999998773 23 6788999998654
No 116
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=98.73 E-value=3.1e-09 Score=83.59 Aligned_cols=76 Identities=26% Similarity=0.493 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCCccccccCCCCCeeeecCCceeEeecCCC
Q 014743 66 SRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLILPS 141 (419)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (419)
.+++.++++++.++.+|.++|++.+.++++.+++++.++++|++++.+.+|.+.++||++|+++.+++.+..++|.
T Consensus 2 ~ev~~lkeei~~L~~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 2 KENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 4688899999999999999999999999999999999999999999999999999999999999999999998875
No 117
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.73 E-value=2.8e-08 Score=98.69 Aligned_cols=113 Identities=20% Similarity=0.287 Sum_probs=74.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~---------------------------------- 232 (419)
++.+.++..+.|.||+|||||||+|+||+.. ...-+.+++.++.
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~ 114 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLRE 114 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 3446778889999999999999999999854 2233443332110
Q ss_pred -------------------------hhhhchhHHHHHH--HHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 233 -------------------------QKYIGEGSRMVRE--LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 233 -------------------------~~~~g~~~~~i~~--lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
.+++++.++..++ .+..|....|.||++|| |.++.|+..+..
T Consensus 115 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE-----------P~s~LD~~~r~~ 183 (355)
T 1z47_A 115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE-----------PFAAIDTQIRRE 183 (355)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------TTCCSSHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHHHHHH
Confidence 0011111122222 23334457799999999 778899999998
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+.++|..+. ...+..+|++||+.+.+.
T Consensus 184 l~~~l~~l~---~~~g~tvi~vTHd~~~a~ 210 (355)
T 1z47_A 184 LRTFVRQVH---DEMGVTSVFVTHDQEEAL 210 (355)
T ss_dssp HHHHHHHHH---HHHTCEEEEECSCHHHHH
T ss_pred HHHHHHHHH---HhcCCEEEEECCCHHHHH
Confidence 988887763 223678999999987653
No 118
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.71 E-value=5e-08 Score=93.00 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=41.3
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.||++|| |+++.|+.....+.+++..+. . .+..||++||+.+.+.
T Consensus 173 aL~~~p~lllLDE-----------Pts~LD~~~~~~~~~~l~~l~---~-~g~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 173 ALAMEPKIMLFDE-----------PTSALDPEMVGEVLSVMKQLA---N-EGMTMVVVTHEMGFAR 223 (263)
T ss_dssp HHTTCCSEEEEES-----------TTTTSCHHHHHHHHHHHHHHH---H-TTCEEEEECSCHHHHH
T ss_pred HHHCCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---h-CCCEEEEEcCCHHHHH
Confidence 3446799999999 788899999999999998873 2 2678999999987654
No 119
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.71 E-value=3.3e-08 Score=92.98 Aligned_cols=111 Identities=19% Similarity=0.280 Sum_probs=72.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.+.+ ..+.|.||+|+|||||+++|++.. ...-+.+++.++.
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 98 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV 98 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc
Confidence 44677 889999999999999999999854 2233444332110
Q ss_pred ----------------------hhhhchhHHHHH--HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHH
Q 014743 233 ----------------------QKYIGEGSRMVR--ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLE 288 (419)
Q Consensus 233 ----------------------~~~~g~~~~~i~--~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~ 288 (419)
.++++..+++.+ -.+..|....|.|+++|| |+++.|+.....+.+
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE-----------Pts~LD~~~~~~~~~ 167 (240)
T 2onk_A 99 ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE-----------PLSAVDLKTKGVLME 167 (240)
T ss_dssp CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES-----------TTSSCCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccCCHHHHHHHHH
Confidence 000111111112 223334457899999999 778899999999999
Q ss_pred HHHHccccccCCCeEEEEEeCCcchhh
Q 014743 289 LLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 289 lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
++.++. ...+..||++||+.+.+.
T Consensus 168 ~l~~l~---~~~g~tvi~vtHd~~~~~ 191 (240)
T 2onk_A 168 ELRFVQ---REFDVPILHVTHDLIEAA 191 (240)
T ss_dssp HHHHHH---HHHTCCEEEEESCHHHHH
T ss_pred HHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 988762 222567889999877653
No 120
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=98.70 E-value=9.2e-09 Score=95.41 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHhhcccchhhccCCCeeEEecCCcccc
Q 014743 38 QHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDI 117 (419)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (419)
+++++++.++..+..+.+.+...++.+++++..++++++.++.+|.++|++++.+++..++++ .++++|++.+.+.++.
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~ 132 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDA 132 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCH
Confidence 357788899999999999999999999999999999999999999999999999888888887 4778999999999999
Q ss_pred ccCCCCCeeeecCCceeEeecCCCCcc
Q 014743 118 TKITPSTRVALRNDSYVLHLILPSKVD 144 (419)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (419)
++|+||++|+++ .++.+..++|.+..
T Consensus 133 e~LkPG~rVaLN-eSlaVVevLp~E~~ 158 (251)
T 3m9b_A 133 ASLKKGQTVRLN-EALTVVEAGTFEAV 158 (251)
T ss_dssp TTSCSSCEEEEC-TTCCBCCCCCCCCC
T ss_pred HHCCCCCEEEeC-CccEEEEecCCCCc
Confidence 999999999995 79999988887643
No 121
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.70 E-value=4.5e-08 Score=96.98 Aligned_cols=121 Identities=25% Similarity=0.314 Sum_probs=78.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.+.++..+.|.||+|||||||+|+||+.. ...-+.+++.++.
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~ 100 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK 100 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 446777889999999999999999999854 2233444332210
Q ss_pred ---------------------hhhhchhHHHHHHHH--HHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHH
Q 014743 233 ---------------------QKYIGEGSRMVRELF--VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL 289 (419)
Q Consensus 233 ---------------------~~~~g~~~~~i~~lf--~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~l 289 (419)
.+++++.++..++.. ..|....|.||++|| |.++.|+..+..+.++
T Consensus 101 ~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE-----------P~s~LD~~~~~~l~~~ 169 (348)
T 3d31_A 101 KIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE-----------PLSALDPRTQENAREM 169 (348)
T ss_dssp CCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES-----------SSTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccCCHHHHHHHHHH
Confidence 001111122222222 223346799999999 7788999999999988
Q ss_pred HHHccccccCCCeEEEEEeCCcchhhH-----HhcCCCce
Q 014743 290 LNQLDGFEASNKIKVLMATNRIDILDQ-----ALLRPGRI 324 (419)
Q Consensus 290 L~~l~~~~~~~~v~VI~tTn~~~~ld~-----allr~gRf 324 (419)
|..+. ...+..+|++||+.+.+.. .+++.|++
T Consensus 170 l~~l~---~~~g~tii~vTHd~~~~~~~adri~vl~~G~i 206 (348)
T 3d31_A 170 LSVLH---KKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206 (348)
T ss_dssp HHHHH---HHTTCEEEEEESCHHHHHHHCSEEEEESSSCE
T ss_pred HHHHH---HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 88763 2346789999999775532 23455554
No 122
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.69 E-value=3.2e-08 Score=98.57 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=73.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~----------------------------------- 232 (419)
+.+.++..+.|.||+|||||||+|+||+.. ...-+.+++.++.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR 103 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 446777889999999999999999999854 2233444332110
Q ss_pred ------------------------hhhhchhHHHHHH--HHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHH
Q 014743 233 ------------------------QKYIGEGSRMVRE--LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM 286 (419)
Q Consensus 233 ------------------------~~~~g~~~~~i~~--lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l 286 (419)
.+++++.++..++ .+..|....|.||++|| |.++.|+..+..+
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE-----------P~s~LD~~~r~~l 172 (362)
T 2it1_A 104 KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE-----------PLSNLDALLRLEV 172 (362)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES-----------GGGGSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccCCHHHHHHH
Confidence 0011111122222 23334457899999999 6677899999888
Q ss_pred HHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 287 LELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 287 ~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.++|..+. ...+..+|++||+.+.+.
T Consensus 173 ~~~l~~l~---~~~g~tvi~vTHd~~~a~ 198 (362)
T 2it1_A 173 RAELKRLQ---KELGITTVYVTHDQAEAL 198 (362)
T ss_dssp HHHHHHHH---HHHTCEEEEEESCHHHHH
T ss_pred HHHHHHHH---HhCCCEEEEECCCHHHHH
Confidence 88887763 223577899999987653
No 123
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.66 E-value=3.4e-08 Score=98.67 Aligned_cols=113 Identities=23% Similarity=0.257 Sum_probs=73.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchh----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELV---------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~---------------------------------- 232 (419)
++.+.++..+.|.||+|||||||+|+||+.. ...-+.+++.++.
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 110 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI 110 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh
Confidence 3456778889999999999999999999853 2233444332110
Q ss_pred -------------------------hhhhchhHH--HHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHH
Q 014743 233 -------------------------QKYIGEGSR--MVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRT 285 (419)
Q Consensus 233 -------------------------~~~~g~~~~--~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~ 285 (419)
.+++++.++ ..|-.+..|....|.||++|| |.++.|+..+..
T Consensus 111 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE-----------P~s~LD~~~r~~ 179 (372)
T 1v43_A 111 KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE-----------PLSNLDAKLRVA 179 (372)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES-----------TTTTSCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-----------CCccCCHHHHHH
Confidence 000000000 012223334457799999999 778899999998
Q ss_pred HHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 286 MLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 286 l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+.++|..+. ...+..+|++||+.+.+.
T Consensus 180 l~~~l~~l~---~~~g~tvi~vTHd~~~a~ 206 (372)
T 1v43_A 180 MRAEIKKLQ---QKLKVTTIYVTHDQVEAM 206 (372)
T ss_dssp HHHHHHHHH---HHHTCEEEEEESCHHHHH
T ss_pred HHHHHHHHH---HhCCCEEEEEeCCHHHHH
Confidence 988887763 223678899999977653
No 124
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.66 E-value=6.9e-08 Score=91.29 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=74.2
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccCC-ceEEEeCcchhh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-TFIRVSGSELVQ----------------------------------- 233 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~-~~i~v~~s~l~~----------------------------------- 233 (419)
+.+.++..+.|.||+|+|||||+++|++.... .-+.+++.++..
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence 45677888999999999999999999985421 445554422100
Q ss_pred ---------------------hhhchhHHHHHH--HHHHHHhhCCc-------eEEecccccccccccCCCCCCCCHHHH
Q 014743 234 ---------------------KYIGEGSRMVRE--LFVMAREHAPS-------IIFMDEIDSIGSARMESGSGNGDSEVQ 283 (419)
Q Consensus 234 ---------------------~~~g~~~~~i~~--lf~~a~~~~ps-------Vl~iDEiD~l~~~r~~~~~~~~~~~~~ 283 (419)
++++...++.++ .+..|....|. +|++|| |+++.|+...
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE-----------Pts~LD~~~~ 169 (249)
T 2qi9_C 101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE-----------PMNSLDVAQQ 169 (249)
T ss_dssp TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS-----------TTTTCCHHHH
T ss_pred CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC-----------CcccCCHHHH
Confidence 000111111122 22233446688 999999 7788999999
Q ss_pred HHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 284 RTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 284 ~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
..+.++|..+. . .+..||++||+.+.+.
T Consensus 170 ~~l~~~l~~l~---~-~g~tviivtHd~~~~~ 197 (249)
T 2qi9_C 170 SALDKILSALS---Q-QGLAIVMSSHDLNHTL 197 (249)
T ss_dssp HHHHHHHHHHH---H-TTCEEEEECSCHHHHH
T ss_pred HHHHHHHHHHH---h-CCCEEEEEeCCHHHHH
Confidence 99999998773 2 2667899999987653
No 125
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.64 E-value=1.1e-07 Score=89.83 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=40.4
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.||++|| |+++.|+.....+.++|..+. ..+..||++||+.+.+.
T Consensus 157 aL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~l~~l~----~~g~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 157 LLVLEPTYAVLDE-----------TDSGLDIDALKVVARGVNAMR----GPNFGALVITHYQRILN 207 (250)
T ss_dssp HHHHCCSEEEEEC-----------GGGTTCHHHHHHHHHHHHHHC----STTCEEEEECSSSGGGG
T ss_pred HHHcCCCEEEEeC-----------CCcCCCHHHHHHHHHHHHHHH----hcCCEEEEEecCHHHHH
Confidence 3446799999999 667799999999999998873 23677899999877553
No 126
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.64 E-value=1.2e-07 Score=90.40 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=41.0
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.||++|| |+++.|+.....+.+++..+. .. +..||++||+++.+.
T Consensus 152 aL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~l~~l~---~~-g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 152 VIVHEPDILILDE-----------PLVGLDREGKTDLLRIVEKWK---TL-GKTVILISHDIETVI 202 (266)
T ss_dssp HHTTCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCTTTG
T ss_pred HHHcCCCEEEEcC-----------ccccCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 4456799999999 778899999999999998773 22 678899999987653
No 127
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.63 E-value=1e-07 Score=90.80 Aligned_cols=51 Identities=20% Similarity=0.368 Sum_probs=41.1
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.||++|| |+++.|+.....+.+++..+. . .+..||++||+.+.+.
T Consensus 167 aL~~~p~lllLDE-----------Pts~LD~~~~~~~~~~l~~l~---~-~g~tvi~vtHd~~~~~ 217 (262)
T 1b0u_A 167 ALAMEPDVLLFDE-----------PTSALDPELVGEVLRIMQQLA---E-EGKTMVVVTHEMGFAR 217 (262)
T ss_dssp HHHTCCSEEEEES-----------TTTTSCHHHHHHHHHHHHHHH---H-TTCCEEEECSCHHHHH
T ss_pred HHhcCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHHH
Confidence 3446799999999 788899999999999998873 2 2677899999987654
No 128
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.63 E-value=1.3e-07 Score=89.26 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=40.2
Q ss_pred HHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 249 MAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 249 ~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
.|....|.||++|| |+++.|+.....+.++|..+. .+..||++|++++.+
T Consensus 158 raL~~~p~lllLDE-----------Pts~LD~~~~~~i~~~l~~~~-----~g~tviivtH~~~~~ 207 (247)
T 2ff7_A 158 RALVNNPKILIFDE-----------ATSALDYESEHVIMRNMHKIC-----KGRTVIIIAHRLSTV 207 (247)
T ss_dssp HHHTTCCSEEEECC-----------CCSCCCHHHHHHHHHHHHHHH-----TTSEEEEECSSGGGG
T ss_pred HHHhcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHc-----CCCEEEEEeCCHHHH
Confidence 34456799999999 778899999999999998772 256789999987754
No 129
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.63 E-value=8.2e-08 Score=89.21 Aligned_cols=114 Identities=21% Similarity=0.258 Sum_probs=69.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHH--hc--cCCceEEEeCcchhhh------hhc-----------------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVA--HH--TDCTFIRVSGSELVQK------YIG----------------------- 237 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA--~~--~~~~~i~v~~s~l~~~------~~g----------------------- 237 (419)
|++++..++|.||+|+|||||++.++ .. .+...+.++....... .+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 67888999999999999999999998 32 2444455544321100 001
Q ss_pred -------------hhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEE
Q 014743 238 -------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 304 (419)
Q Consensus 238 -------------~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~V 304 (419)
........+...+....|.+|++||+-.+..... ........+..++..+. ..++.|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~------d~~~~~~~l~~l~~~l~----~~g~ti 175 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE------EERKIREVLLKLNTILL----EMGVTT 175 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS------SGGGHHHHHHHHHHHHH----HHCCEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC------CHHHHHHHHHHHHHHHH----HCCCeE
Confidence 0112233444445567899999999887653211 11334455677776662 336788
Q ss_pred EEEeCCcchh
Q 014743 305 LMATNRIDIL 314 (419)
Q Consensus 305 I~tTn~~~~l 314 (419)
|++||..+..
T Consensus 176 i~vtH~~~~~ 185 (251)
T 2ehv_A 176 ILTTEAPDPQ 185 (251)
T ss_dssp EEEECCC---
T ss_pred EEEECCCCCC
Confidence 9999987765
No 130
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.61 E-value=1.1e-07 Score=89.18 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=40.6
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.||++|| |+++.|+.....+.+++..+. . .+..||++||+.+.+.
T Consensus 153 aL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~l~~~~---~-~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 153 ALMSRPKLLMMDE-----------PSLGLAPILVSEVFEVIQKIN---Q-EGTTILLVEQNALGAL 203 (240)
T ss_dssp HHTTCCSEEEEEC-----------TTTTCCHHHHHHHHHHHHHHH---H-TTCCEEEEESCHHHHH
T ss_pred HHHcCCCEEEEcC-----------CcccCCHHHHHHHHHHHHHHH---H-CCCEEEEEecCHHHHH
Confidence 3446799999999 778899999999999998773 2 3567889999976553
No 131
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.61 E-value=2e-07 Score=85.32 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=65.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcch----hhh--hhc------------------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL----VQK--YIG------------------------ 237 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l----~~~--~~g------------------------ 237 (419)
|+.++..++|+||||+|||+|++.++... +..++.++.... ... ..|
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 57788889999999999999999999643 344444443211 000 000
Q ss_pred ------hhHHHHHHHHHHHHhhCCc--eEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 238 ------EGSRMVRELFVMAREHAPS--IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 238 ------~~~~~i~~lf~~a~~~~ps--Vl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
........+...+..+.|. +|+|||+..+... ++.....+...|..+ ....++.||++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~---------d~~~~~~~~~~l~~~---~~~~~~~vi~~~h 166 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD---------KPAMARKISYYLKRV---LNKWNFTIYATSQ 166 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS---------CGGGHHHHHHHHHHH---HHHTTEEEEEEEC
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC---------CHHHHHHHHHHHHHH---HHhCCCeEEEEec
Confidence 1122234445555667899 9999999886421 222233344444433 1234688999998
Q ss_pred Cc
Q 014743 310 RI 311 (419)
Q Consensus 310 ~~ 311 (419)
..
T Consensus 167 ~~ 168 (235)
T 2w0m_A 167 YA 168 (235)
T ss_dssp --
T ss_pred cC
Confidence 87
No 132
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.61 E-value=1.1e-07 Score=92.71 Aligned_cols=111 Identities=21% Similarity=0.338 Sum_probs=74.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchh----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELV---------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~---------------------------------- 232 (419)
++.++++..+.|.||+|+|||||+++|++.+. ..-+.+++.++.
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~ 153 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV 153 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc
Confidence 34567888999999999999999999998542 233444432110
Q ss_pred --------------------hhhh-----------chhHHHHHH--HHHHHHhhCCceEEecccccccccccCCCCCCCC
Q 014743 233 --------------------QKYI-----------GEGSRMVRE--LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 279 (419)
Q Consensus 233 --------------------~~~~-----------g~~~~~i~~--lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~ 279 (419)
..++ ....+..++ .+..|....|.||++|| ++++.|
T Consensus 154 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDE-----------Pts~LD 222 (306)
T 3nh6_A 154 TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDE-----------ATSALD 222 (306)
T ss_dssp TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC-----------CSSCCC
T ss_pred cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CcccCC
Confidence 0000 011222233 34445567899999999 777899
Q ss_pred HHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 280 ~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+.....+.++|..+. . +..+|++||+.+.+.
T Consensus 223 ~~~~~~i~~~l~~l~----~-~~Tvi~itH~l~~~~ 253 (306)
T 3nh6_A 223 TSNERAIQASLAKVC----A-NRTTIVVAHRLSTVV 253 (306)
T ss_dssp HHHHHHHHHHHHHHH----T-TSEEEEECCSHHHHH
T ss_pred HHHHHHHHHHHHHHc----C-CCEEEEEEcChHHHH
Confidence 999988888887763 2 356788999987653
No 133
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.60 E-value=9e-08 Score=95.67 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=41.3
Q ss_pred HHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 249 MAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 249 ~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.|....|.||++|| |.++.|+..+..+..+|..+. ...+..+|++||+.+.+.
T Consensus 152 rAL~~~P~lLLLDE-----------P~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~~a~ 204 (372)
T 1g29_1 152 RAIVRKPQVFLMDE-----------PLSNLDAKLRVRMRAELKKLQ---RQLGVTTIYVTHDQVEAM 204 (372)
T ss_dssp HHHHTCCSEEEEEC-----------TTTTSCHHHHHHHHHHHHHHH---HHHTCEEEEEESCHHHHH
T ss_pred HHHhcCCCEEEECC-----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEECCCHHHHH
Confidence 34457899999999 778899999998888887763 223678899999977653
No 134
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.59 E-value=2.3e-07 Score=88.72 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=41.4
Q ss_pred HHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 248 VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 248 ~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
..|....|.||++|| |+++.|+.....+.++|..+. ...+..||++|++.+.+
T Consensus 168 AraL~~~p~lllLDE-----------Pts~LD~~~~~~i~~~l~~~~---~~~g~tviivtHd~~~~ 220 (271)
T 2ixe_A 168 ARALIRKPRLLILDN-----------ATSALDAGNQLRVQRLLYESP---EWASRTVLLITQQLSLA 220 (271)
T ss_dssp HHHHTTCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHCT---TTTTSEEEEECSCHHHH
T ss_pred HHHHhcCCCEEEEEC-----------CccCCCHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHHHH
Confidence 344457799999999 778899999999999998762 22367789999987654
No 135
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.59 E-value=2e-07 Score=88.23 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=42.2
Q ss_pred HHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 248 VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 248 ~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
..|....|.||++|| |+++.|+.....+.+++..+. ...+..||++||+.+.+.
T Consensus 140 AraL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~~~ 193 (253)
T 2nq2_C 140 ARAIASECKLILLDE-----------PTSALDLANQDIVLSLLIDLA---QSQNMTVVFTTHQPNQVV 193 (253)
T ss_dssp HHHHHTTCSEEEESS-----------SSTTSCHHHHHHHHHHHHHHH---HTSCCEEEEEESCHHHHH
T ss_pred HHHHHcCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHH
Confidence 334457899999999 778899999999999988763 222677899999987654
No 136
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.56 E-value=2e-07 Score=87.30 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=72.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeC-------c-ch--------h------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSG-------S-EL--------V------------------ 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~-------s-~l--------~------------------ 232 (419)
++.+.++..+.|.||+|+|||||+++|++... ..-+.+++ . .+ +
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 104 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC 104 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHH
Confidence 34567888899999999999999999998541 12222211 0 00 0
Q ss_pred -----------------hhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHc
Q 014743 233 -----------------QKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 293 (419)
Q Consensus 233 -----------------~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l 293 (419)
.+.+....+.. |-.+..|....|.||++|| |+++.|+.....+.+++...
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE-----------Pts~LD~~~~~~i~~~l~~~ 173 (237)
T 2cbz_A 105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD-----------PLSAVDAHVGKHIFENVIGP 173 (237)
T ss_dssp TCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES-----------TTTTSCHHHHHHHHHHTTST
T ss_pred hhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC-----------cccccCHHHHHHHHHHHHHH
Confidence 00011222222 2344455567899999999 77889998888888877422
Q ss_pred cccccCCCeEEEEEeCCcchh
Q 014743 294 DGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 294 ~~~~~~~~v~VI~tTn~~~~l 314 (419)
... . .+..||++||+.+.+
T Consensus 174 ~~~-~-~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 174 KGM-L-KNKTRILVTHSMSYL 192 (237)
T ss_dssp TST-T-TTSEEEEECSCSTTG
T ss_pred Hhh-c-CCCEEEEEecChHHH
Confidence 222 1 357789999988765
No 137
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.56 E-value=3e-07 Score=87.15 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=41.4
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|....|.||++|| |+++.|+.....+.+++..+. ..+..||++||+.+.+.
T Consensus 167 aL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~l~~l~----~~g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 167 ALMTNPKMIVMDE-----------PIAGVAPGLAHDIFNHVLELK----AKGITFLIIEHRLDIVL 217 (257)
T ss_dssp HHHTCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECSCCSTTG
T ss_pred HHHcCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH----HCCCEEEEEecCHHHHH
Confidence 3447799999999 788899999999999998773 23678899999987654
No 138
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.55 E-value=7.6e-08 Score=95.54 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 249 MAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 249 ~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.|....|.||++|| |.++.|+..+..+.++|..+. ...+..+|++||+.+.+.
T Consensus 153 raL~~~P~lLLLDE-----------P~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~~~~ 205 (353)
T 1oxx_K 153 RALVKDPSLLLLDE-----------PFSNLDARMRDSARALVKEVQ---SRLGVTLLVVSHDPADIF 205 (353)
T ss_dssp HHHTTCCSEEEEES-----------TTTTSCGGGHHHHHHHHHHHH---HHHCCEEEEEESCHHHHH
T ss_pred HHHHhCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 34457899999999 778899988888888887763 223678999999987653
No 139
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.55 E-value=2.9e-07 Score=85.15 Aligned_cols=121 Identities=15% Similarity=0.215 Sum_probs=66.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhc--c-------CCceEEEeCcchh--h------hhhch---------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHH--T-------DCTFIRVSGSELV--Q------KYIGE--------------- 238 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~--~-------~~~~i~v~~s~l~--~------~~~g~--------------- 238 (419)
|++++..++|+||||+|||+|++.++.. . +...+.+++.+.. . ..+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 6788889999999999999999999984 2 4567777765410 0 00111
Q ss_pred -hH---HHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCC-HHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 239 -GS---RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGD-SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 239 -~~---~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~-~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
.. ..+..+.+.+....|.+|+|||+..+.....+. ..+ .+-++.+.+++..+..+....++.||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~ 176 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSG---RGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ 176 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC----------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-----
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec
Confidence 01 112334444556789999999998875432110 011 1112123333333332223346788888886554
Q ss_pred h
Q 014743 314 L 314 (419)
Q Consensus 314 l 314 (419)
.
T Consensus 177 ~ 177 (243)
T 1n0w_A 177 V 177 (243)
T ss_dssp -
T ss_pred C
Confidence 4
No 140
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.54 E-value=1.1e-07 Score=87.80 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=70.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcch----------------hh------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSEL----------------VQ------------------ 233 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l----------------~~------------------ 233 (419)
+.+.++..+.|.||+|+|||||+++|++... ..-+.+++.++ ..
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 109 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK 109 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCc
Confidence 4456778899999999999999999998542 22333332110 00
Q ss_pred -------------------hhhchhHHHHHHHH--HHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHH
Q 014743 234 -------------------KYIGEGSRMVRELF--VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ 292 (419)
Q Consensus 234 -------------------~~~g~~~~~i~~lf--~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~ 292 (419)
+.+....+..++.+ ..|....|.|+++|| |+++.|+.....+.+++..
T Consensus 110 ~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~l~~ 178 (214)
T 1sgw_A 110 VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDD-----------PVVAIDEDSKHKVLKSILE 178 (214)
T ss_dssp CCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES-----------TTTTSCTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CCcCCCHHHHHHHHHHHHH
Confidence 00001111222222 223346799999999 6777888888888888877
Q ss_pred ccccccCCCeEEEEEeCCcchh
Q 014743 293 LDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 293 l~~~~~~~~v~VI~tTn~~~~l 314 (419)
+. . .+..||++|++++.+
T Consensus 179 ~~---~-~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 179 IL---K-EKGIVIISSREELSY 196 (214)
T ss_dssp HH---H-HHSEEEEEESSCCTT
T ss_pred HH---h-CCCEEEEEeCCHHHH
Confidence 63 1 246788899987754
No 141
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.54 E-value=2.6e-07 Score=112.14 Aligned_cols=139 Identities=22% Similarity=0.291 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHH-hccCCceEEEeCcchhhhhhchhHHHHHHHHHHH----H------------hhCCc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVA-HHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA----R------------EHAPS 256 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA-~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a----~------------~~~ps 256 (419)
.++.+||+||||||||.+++... ...+..++.++++.-.+ ...+...++.- + .....
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 45789999999999998776544 44466678888875432 12232333221 0 01124
Q ss_pred eEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccC-------CCeEEEEEeCCc-----chhhHHhcCCCce
Q 014743 257 IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS-------NKIKVLMATNRI-----DILDQALLRPGRI 324 (419)
Q Consensus 257 Vl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~-------~~v~VI~tTn~~-----~~ld~allr~gRf 324 (419)
|+|+||++.-.. +..+.......+.|+++...-++.. .++.+|+|+|.+ ..+++.|+| ||
T Consensus 1377 VlFiDDiNmp~~------D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F 1448 (3245)
T 3vkg_A 1377 VVFCDEINLPST------DKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA 1448 (3245)
T ss_dssp EEEETTTTCCCC------CTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC
T ss_pred EEEecccCCCCc------cccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc
Confidence 999999986211 1223345677888888764333322 368899999987 468999999 99
Q ss_pred eEEEEcCCCCHHHHHHHHHHHHh
Q 014743 325 DRKIEFPNPNEESRLDILKIHSR 347 (419)
Q Consensus 325 d~~I~~~~P~~~~r~~Il~~~~~ 347 (419)
- .+.++.|+.+....|+..++.
T Consensus 1449 ~-vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 P-ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp C-EEECCCCCHHHHHHHHHHHHH
T ss_pred e-EEEeCCCCHHHHHHHHHHHHH
Confidence 7 599999999999999876554
No 142
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.53 E-value=4.9e-07 Score=86.25 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=40.3
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
....|.||++|| |+++.|+.....+.+++..+. ..+..||++||+.+.+.
T Consensus 179 L~~~p~lLlLDE-----------Pts~LD~~~~~~l~~~l~~l~----~~g~tviivtHd~~~~~ 228 (267)
T 2zu0_C 179 AVLEPELCILDE-----------SDSGLDIDALKVVADGVNSLR----DGKRSFIIVTHYQRILD 228 (267)
T ss_dssp HHHCCSEEEEES-----------TTTTCCHHHHHHHHHHHHTTC----CSSCEEEEECSSGGGGG
T ss_pred HHhCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH----hcCCEEEEEeeCHHHHH
Confidence 346799999999 778899999999999998763 23677899999887653
No 143
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.52 E-value=7.2e-08 Score=88.22 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=27.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhccCCce
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF 223 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~ 223 (419)
+++..+++|||||||||||++|.++|+.+...+
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 345557899999999999999999999875443
No 144
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.50 E-value=6.4e-07 Score=85.10 Aligned_cols=110 Identities=19% Similarity=0.271 Sum_probs=73.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhccC-CceEEEeCcchhh-------h---------------------h----
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSELVQ-------K---------------------Y---- 235 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~-~~~i~v~~s~l~~-------~---------------------~---- 235 (419)
++.+.++..+.|.||+|+|||||+++|++... ..-+.+++.++.. . +
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~ 119 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCC
Confidence 34567888899999999999999999997542 1233333321100 0 0
Q ss_pred ---------------------------------hchhHHHHH--HHHHHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 236 ---------------------------------IGEGSRMVR--ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 236 ---------------------------------~g~~~~~i~--~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
+....+..+ -.+..|....|.||++|| |+++.|+
T Consensus 120 ~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE-----------Pts~LD~ 188 (260)
T 2ghi_A 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDE-----------ATSSLDS 188 (260)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEEC-----------CCCTTCH
T ss_pred CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccCCH
Confidence 001111122 223344457899999999 7788999
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
.....+.+++..+. . +..||++||+++.+
T Consensus 189 ~~~~~i~~~l~~l~----~-~~tviivtH~~~~~ 217 (260)
T 2ghi_A 189 KTEYLFQKAVEDLR----K-NRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHHHHHHHHHT----T-TSEEEEECSSGGGS
T ss_pred HHHHHHHHHHHHhc----C-CCEEEEEcCCHHHH
Confidence 99999999998873 2 46789999987754
No 145
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.50 E-value=2.4e-07 Score=89.05 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=39.2
Q ss_pred HHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEE--EEEeCCcchh
Q 014743 250 AREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV--LMATNRIDIL 314 (419)
Q Consensus 250 a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~V--I~tTn~~~~l 314 (419)
|....|.||++|| |+++.|+.....+.++|..+. .. +..| |++||+.+.+
T Consensus 175 aL~~~p~lLlLDE-----------Pts~LD~~~~~~l~~~l~~l~---~~-g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 175 ALMGQPQVLILDE-----------PAAGLDFIARESLLSILDSLS---DS-YPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHTCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHH---HH-CTTCEEEEEESCGGGC
T ss_pred HHhCCCCEEEEeC-----------CccccCHHHHHHHHHHHHHHH---HC-CCEEEEEEEecCHHHH
Confidence 3447799999999 788899999999999988773 22 4456 8899987765
No 146
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.50 E-value=1.7e-07 Score=94.26 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=73.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhccC-CceEEEeCcch------------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-CTFIRVSGSEL------------------------------------ 231 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~-~~~i~v~~s~l------------------------------------ 231 (419)
++.+.++..+.|.||+|||||||+++|++... ..-+.+++.++
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~ 120 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCS
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcccc
Confidence 34567888999999999999999999997431 12233332111
Q ss_pred -----------------hhhhhch-----------hHHHHHH--HHHHHHhhCCceEEecccccccccccCCCCCCCCHH
Q 014743 232 -----------------VQKYIGE-----------GSRMVRE--LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSE 281 (419)
Q Consensus 232 -----------------~~~~~g~-----------~~~~i~~--lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~ 281 (419)
..+++.. .++..++ .+..|....|.||++|| |+++.|+.
T Consensus 121 ~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDE-----------Pts~LD~~ 189 (390)
T 3gd7_A 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE-----------PSAHLDPV 189 (390)
T ss_dssp CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEES-----------HHHHSCHH
T ss_pred CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeC-----------CccCCCHH
Confidence 1112222 3333333 34445567899999999 55678888
Q ss_pred HHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 282 VQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 282 ~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
.+..+..+|..+. .+..+|++||+.+.+
T Consensus 190 ~~~~l~~~l~~~~-----~~~tvi~vtHd~e~~ 217 (390)
T 3gd7_A 190 TYQIIRRTLKQAF-----ADCTVILCEARIEAM 217 (390)
T ss_dssp HHHHHHHHHHTTT-----TTSCEEEECSSSGGG
T ss_pred HHHHHHHHHHHHh-----CCCEEEEEEcCHHHH
Confidence 8888888887642 246788999987644
No 147
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.47 E-value=1.9e-07 Score=87.79 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=39.1
Q ss_pred HHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 246 LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 246 lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
.+..|....|.+|++|| |+++.|+.....+.+++..+. .+..||++||+.+.+
T Consensus 149 ~lAral~~~p~lllLDE-----------Pts~LD~~~~~~i~~~l~~~~-----~~~tvi~vtH~~~~~ 201 (243)
T 1mv5_A 149 AIARAFLRNPKILMLDE-----------ATASLDSESESMVQKALDSLM-----KGRTTLVIAHRLSTI 201 (243)
T ss_dssp HHHHHHHHCCSEEEEEC-----------CSCSSCSSSCCHHHHHHHHHH-----TTSEEEEECCSHHHH
T ss_pred HHHHHHhcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHhc-----CCCEEEEEeCChHHH
Confidence 33445567899999999 666777777777788877662 256789999987654
No 148
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.46 E-value=1.2e-06 Score=83.49 Aligned_cols=106 Identities=24% Similarity=0.322 Sum_probs=70.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc-CCceEEEeCcch------------h------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSEL------------V------------------------ 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~-~~~~i~v~~s~l------------~------------------------ 232 (419)
+.+. +..+.|.||+|+|||||+|+|++.. ...-+.+++.++ +
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~ 104 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLD 104 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCC
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchH
Confidence 4567 7789999999999999999999864 112333333110 0
Q ss_pred ------------------hhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHH
Q 014743 233 ------------------QKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQ 292 (419)
Q Consensus 233 ------------------~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~ 292 (419)
.++++...+.. +-.+..|....|.++++|| |+++.|+.....+.++|..
T Consensus 105 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE-----------Pts~LD~~~~~~l~~~L~~ 173 (263)
T 2pjz_A 105 RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE-----------PFENVDAARRHVISRYIKE 173 (263)
T ss_dssp HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC-----------TTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CccccCHHHHHHHHHHHHH
Confidence 00011111111 2223334457899999999 7788999999999999987
Q ss_pred ccccccCCCeEEEEEeCCcchh
Q 014743 293 LDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 293 l~~~~~~~~v~VI~tTn~~~~l 314 (419)
+.. .||++||+.+.+
T Consensus 174 ~~~-------tviivtHd~~~~ 188 (263)
T 2pjz_A 174 YGK-------EGILVTHELDML 188 (263)
T ss_dssp SCS-------EEEEEESCGGGG
T ss_pred hcC-------cEEEEEcCHHHH
Confidence 731 788999987754
No 149
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.45 E-value=4.9e-08 Score=86.56 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=21.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHH
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAV 215 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~Lakal 215 (419)
+.+.++.-+.|.||+|||||||++++
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 34567788999999999999999953
No 150
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.45 E-value=3.2e-07 Score=84.07 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=66.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---------CCceEEEeCcchhh--------hhhc----------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGSELVQ--------KYIG---------------- 237 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---------~~~~i~v~~s~l~~--------~~~g---------------- 237 (419)
|++++..+.|.||||+|||||++.++... +...+.+++..... ...+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 67788889999999999999999999732 33366666543210 0000
Q ss_pred ---hhHHHHHHHHHHHH-----hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 238 ---EGSRMVRELFVMAR-----EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 238 ---~~~~~i~~lf~~a~-----~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
.....+..+...+. ...|.+|++||+-.........+ +...+-.+.+.+++..+..+....++.||++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~--~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH 178 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR--GALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 178 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCST--THHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCC--cchhHHHHHHHHHHHHHHHHHHHCCCeEEEEee
Confidence 00111233344444 56899999999877543321110 000111111223333322222334788999999
Q ss_pred Ccch
Q 014743 310 RIDI 313 (419)
Q Consensus 310 ~~~~ 313 (419)
..+.
T Consensus 179 ~~~~ 182 (231)
T 4a74_A 179 VQAN 182 (231)
T ss_dssp CC--
T ss_pred cccC
Confidence 6555
No 151
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.44 E-value=3.6e-07 Score=83.17 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
|++++..++|+||||+|||++++.+|...+...+.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5788889999999999999999999984455677776543
No 152
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.43 E-value=4.8e-07 Score=84.26 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=69.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCc--------ch---------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGS--------EL--------------------------- 231 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s--------~l--------------------------- 231 (419)
++.+.++..+.|.||+|+|||||+++|++... ..-+.+++. .+
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 107 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKAC 107 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHh
Confidence 34567788899999999999999999998542 122222110 00
Q ss_pred -----hhhh-----------hchhHHHHH--HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHH-HHH
Q 014743 232 -----VQKY-----------IGEGSRMVR--ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLEL-LNQ 292 (419)
Q Consensus 232 -----~~~~-----------~g~~~~~i~--~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~l-L~~ 292 (419)
...+ .+...+..+ -.+..|....|.++++|| |+++.|+.....+.++ +..
T Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDE-----------Pts~LD~~~~~~i~~~l~~~ 176 (229)
T 2pze_A 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS-----------PFGYLDVLTEKEIFESCVCK 176 (229)
T ss_dssp TCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES-----------TTTTSCHHHHHHHHHHCCCC
T ss_pred CcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC-----------cccCCCHHHHHHHHHHHHHH
Confidence 0000 012222222 334455567899999999 7778999888877775 333
Q ss_pred ccccccCCCeEEEEEeCCcchh
Q 014743 293 LDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 293 l~~~~~~~~v~VI~tTn~~~~l 314 (419)
+ . .+..||++||+.+.+
T Consensus 177 ~----~-~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 177 L----M-ANKTRILVTSKMEHL 193 (229)
T ss_dssp C----T-TTSEEEEECCCHHHH
T ss_pred h----h-CCCEEEEEcCChHHH
Confidence 3 1 256789999987654
No 153
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.39 E-value=9.7e-07 Score=87.59 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=73.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh----hhhc------------hhHHHHHHHHHHHH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ----KYIG------------EGSRMVRELFVMAR 251 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~----~~~g------------~~~~~i~~lf~~a~ 251 (419)
|++++..++|+||||||||+|+..++..+ +..+++++..+... ..+| ..+..+..+...++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56778889999999999999999999764 45667777654221 1111 11222222223344
Q ss_pred hhCCceEEecccccccc-cccCCCCCCCC-HHHHHHHHHHHHHccccccCCCeEEEEEeCC
Q 014743 252 EHAPSIIFMDEIDSIGS-ARMESGSGNGD-SEVQRTMLELLNQLDGFEASNKIKVLMATNR 310 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~-~r~~~~~~~~~-~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~ 310 (419)
...|.+++||.+-.+.+ ...+...+..+ ....+.+.+++..+..+....++.||++.+-
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 57899999999999876 22221111111 1234556666666655555667877776554
No 154
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.38 E-value=8.5e-07 Score=104.06 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=89.0
Q ss_pred ccCChhHHhhc---CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhhh----hc--------hhHH
Q 014743 180 PIKHPELFESL---GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKY----IG--------EGSR 241 (419)
Q Consensus 180 ~l~~~~~~~~~---gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~~----~g--------~~~~ 241 (419)
|...+++..-+ |+.++..++|+|+||+|||+|+..+|..+ +.+++++++.+..... +| ..+.
T Consensus 714 ~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~ 793 (2050)
T 3cmu_A 714 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 793 (2050)
T ss_dssp CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCS
T ss_pred ecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCC
Confidence 44456677776 58899999999999999999999999865 4468888876554433 22 1122
Q ss_pred HHHHHHHHHHh----hCCceEEecccccccc-cccCC-CCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 242 MVRELFVMARE----HAPSIIFMDEIDSIGS-ARMES-GSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 242 ~i~~lf~~a~~----~~psVl~iDEiD~l~~-~r~~~-~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
.+.++++.++. ..|++|+||.+..+.+ .+.+. +.+....-..+.+.+++..+..+....++.||++++-..
T Consensus 794 ~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r 870 (2050)
T 3cmu_A 794 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 870 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEE
T ss_pred CHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccc
Confidence 34555555554 7899999999999976 32111 111111112344677777777766777899988877544
No 155
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.36 E-value=1e-06 Score=92.12 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=74.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeC----------------c------------------------
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSG----------------S------------------------ 229 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~----------------s------------------------ 229 (419)
+.++..+.|.||+|||||||+++|++... ..-+.++. +
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 45777899999999999999999997431 11111100 0
Q ss_pred ------chhhhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCC
Q 014743 230 ------ELVQKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK 301 (419)
Q Consensus 230 ------~l~~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 301 (419)
++..++++..++.. +-.+..|....|.||++|| |+++.|...+..+.++|..+. ...+
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE-----------PT~gLD~~~~~~i~~~l~~l~---~~~g 436 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ-----------PSSYLDVEERYIVAKAIKRVT---RERK 436 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHH---HHTT
T ss_pred HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH---HhCC
Confidence 00111233333333 4445556678899999999 888899999988998888763 2346
Q ss_pred eEEEEEeCCcchhh
Q 014743 302 IKVLMATNRIDILD 315 (419)
Q Consensus 302 v~VI~tTn~~~~ld 315 (419)
..||++||+.+.+.
T Consensus 437 ~tvi~vsHdl~~~~ 450 (538)
T 3ozx_A 437 AVTFIIDHDLSIHD 450 (538)
T ss_dssp CEEEEECSCHHHHH
T ss_pred CEEEEEeCCHHHHH
Confidence 78899999987654
No 156
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.36 E-value=7.3e-06 Score=80.34 Aligned_cols=176 Identities=12% Similarity=0.120 Sum_probs=109.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc---CC-c--eEEEeCcchhhhhhchhHHHHHHHHHHHHh----hCCceEEecc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT---DC-T--FIRVSGSELVQKYIGEGSRMVRELFVMARE----HAPSIIFMDE 262 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~---~~-~--~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~----~~psVl~iDE 262 (419)
+.+..+|||||+|.||++.++.++..+ +. + .+.+++ ...++++++.+.. ....||+|||
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~ 84 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLL 84 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEEC
Confidence 345689999999999999999998754 21 1 222221 1234555555543 3467999999
Q ss_pred ccc-ccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc------chhhHHhcCCCceeEEEEcCCCCH
Q 014743 263 IDS-IGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI------DILDQALLRPGRIDRKIEFPNPNE 335 (419)
Q Consensus 263 iD~-l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~------~~ld~allr~gRfd~~I~~~~P~~ 335 (419)
++. +. ....+.+...+.+ ...++++|++|+.+ ..+.+.+.+ |. ..+.|.+++.
T Consensus 85 ~~~kl~------------~~~~~aLl~~le~-----p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~ 144 (343)
T 1jr3_D 85 PENGPN------------AAINEQLLTLTGL-----LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQ 144 (343)
T ss_dssp CSSCCC------------TTHHHHHHHHHTT-----CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCT
T ss_pred CCCCCC------------hHHHHHHHHHHhc-----CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCH
Confidence 887 52 1234555555543 23466666666653 457778877 44 4788999999
Q ss_pred HHHHHHHHHHHhhcccCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 014743 336 ESRLDILKIHSRRMNLMR-GIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 403 (419)
Q Consensus 336 ~~r~~Il~~~~~~~~~~~-~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~Al~~v 403 (419)
.+....++..++..++.- ...+..|+..+.| +.+++.+.+......+ ....||.+|+...+...
T Consensus 145 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 145 AQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp THHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 998888887776654321 1225566666655 4555555554443332 23468888877665543
No 157
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.35 E-value=1.1e-06 Score=92.84 Aligned_cols=109 Identities=22% Similarity=0.326 Sum_probs=74.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchhh----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQ---------------------------------- 233 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~~---------------------------------- 233 (419)
+.++++..+.+.||+|+|||||++.+++... .+-+.+++.++..
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~ 441 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT 441 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCC
Confidence 4567888899999999999999999998652 2345554422100
Q ss_pred --------------------hhh-------c----hhHHHHHHH--HHHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 234 --------------------KYI-------G----EGSRMVREL--FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 234 --------------------~~~-------g----~~~~~i~~l--f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.++ | ...++.++. +.+|.-..|.|+++|| ++++.|+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDE-----------pts~LD~ 510 (578)
T 4a82_A 442 ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE-----------ATSALDL 510 (578)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEES-----------TTTTCCH
T ss_pred CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccCCH
Confidence 000 0 112223333 3344457899999999 7778999
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
.....+.+.+..+. .+..+|++||+++.+
T Consensus 511 ~~~~~i~~~l~~~~-----~~~t~i~itH~l~~~ 539 (578)
T 4a82_A 511 ESESIIQEALDVLS-----KDRTTLIVAHRLSTI 539 (578)
T ss_dssp HHHHHHHHHHHHHT-----TTSEEEEECSSGGGT
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEEecCHHHH
Confidence 98888888887762 235678899998865
No 158
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.35 E-value=1.3e-06 Score=92.66 Aligned_cols=111 Identities=23% Similarity=0.355 Sum_probs=76.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchh----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELV---------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~---------------------------------- 232 (419)
++.++++..+.+.||+|+|||||++.+++... .+-+.+++.++.
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~ 454 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP 454 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC
Confidence 34577888999999999999999999998542 234444442210
Q ss_pred --------------------hhhh-----------chhHHHHHHH--HHHHHhhCCceEEecccccccccccCCCCCCCC
Q 014743 233 --------------------QKYI-----------GEGSRMVREL--FVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 279 (419)
Q Consensus 233 --------------------~~~~-----------g~~~~~i~~l--f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~ 279 (419)
..++ ....++.++. +.+|.-..|.|+++|| ++++.|
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDE-----------pts~LD 523 (598)
T 3qf4_B 455 GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDE-----------ATSNVD 523 (598)
T ss_dssp TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECC-----------CCTTCC
T ss_pred CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CccCCC
Confidence 0000 0112333333 3445567899999999 777899
Q ss_pred HHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 280 ~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+.....+.+.+.++. .+..+|++||+++.+.
T Consensus 524 ~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~~~ 554 (598)
T 3qf4_B 524 TKTEKSIQAAMWKLM-----EGKTSIIIAHRLNTIK 554 (598)
T ss_dssp HHHHHHHHHHHHHHH-----TTSEEEEESCCTTHHH
T ss_pred HHHHHHHHHHHHHHc-----CCCEEEEEecCHHHHH
Confidence 999888888887762 2567899999988764
No 159
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.35 E-value=8.6e-07 Score=84.34 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
+.++++||||||||||+++++||+.+.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 356899999999999999999999754
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.34 E-value=1.6e-06 Score=82.41 Aligned_cols=99 Identities=20% Similarity=0.283 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccC---CceEEEeCcch--h---------hhhhchhHHHHHHHHHHHHhhCCce
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSEL--V---------QKYIGEGSRMVRELFVMAREHAPSI 257 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~---~~~i~v~~s~l--~---------~~~~g~~~~~i~~lf~~a~~~~psV 257 (419)
+.++..++|.||+|+||||+++++++... ..-+.+.+..+ + ...+|.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 46677799999999999999999998642 33344433221 1 0011111123466777777789999
Q ss_pred EEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 258 IFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 258 l~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
|++||.- +.+... .++... ..+..|+++||..+
T Consensus 102 lllDEp~--------------D~~~~~---~~l~~~-----~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 102 IFVGEMR--------------DLETVE---TALRAA-----ETGHLVFGTLHTNT 134 (261)
T ss_dssp EEESCCC--------------SHHHHH---HHHHHH-----HTTCEEEEEECCSS
T ss_pred EEeCCCC--------------CHHHHH---HHHHHH-----ccCCEEEEEeCcch
Confidence 9999941 333322 223322 13456889999866
No 161
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.33 E-value=7.8e-07 Score=88.15 Aligned_cols=121 Identities=20% Similarity=0.311 Sum_probs=67.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh----hhhc------------hhHHHHHHHHHHHH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ----KYIG------------EGSRMVRELFVMAR 251 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~----~~~g------------~~~~~i~~lf~~a~ 251 (419)
|++++..++|+||||+|||+|+..++... +...+.++...-.. ...| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 67788889999999999999999998643 45566666543211 1112 11222222222334
Q ss_pred hhCCceEEecccccccccccCCCCCCCCH---HHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDS---EVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~---~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
...|.+|+||++..+.+...-.+ ..++. .-.+.+.+++..+.......++.||++++...
T Consensus 137 ~~~~~lIVIDsl~~l~~~~e~~~-~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVPRAEIEG-EMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp TTCCSEEEEECGGGCCCHHHHTT-C----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred cCCCCEEEEcChHhhcchhhhcc-ccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 56799999999999874211000 00111 11123444444443322344677888876543
No 162
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.32 E-value=3.2e-06 Score=102.87 Aligned_cols=125 Identities=16% Similarity=0.250 Sum_probs=92.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHhhCCceEEecccccccccccCCCC
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 275 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~ 275 (419)
.+..+.||+|||||.++|.+|+.++.+++.++|++-+.- ..+..+|.-+... .+...|||++.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNr---------- 667 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNR---------- 667 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTS----------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhc----------
Confidence 456799999999999999999999999999999874432 2345566555443 46889999988
Q ss_pred CCCCHHHHHHHHHHHHHcc--------------c--cccCCCeEEEEEeCCc----chhhHHhcCCCceeEEEEcCCCCH
Q 014743 276 GNGDSEVQRTMLELLNQLD--------------G--FEASNKIKVLMATNRI----DILDQALLRPGRIDRKIEFPNPNE 335 (419)
Q Consensus 276 ~~~~~~~~~~l~~lL~~l~--------------~--~~~~~~v~VI~tTn~~----~~ld~allr~gRfd~~I~~~~P~~ 335 (419)
.+.++...+.+.+..+. | +.-..++.|++|.|.. ..+++++.. ||- .|.++.||.
T Consensus 668 --l~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr-~v~m~~Pd~ 742 (3245)
T 3vkg_A 668 --LEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFR-SMAMIKPDR 742 (3245)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEE-EEECCSCCH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcE-EEEEeCCCH
Confidence 45666666666554211 1 2223467788898843 478999998 884 599999999
Q ss_pred HHHHHHH
Q 014743 336 ESRLDIL 342 (419)
Q Consensus 336 ~~r~~Il 342 (419)
+...+|+
T Consensus 743 ~~i~ei~ 749 (3245)
T 3vkg_A 743 EMIAQVM 749 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888886
No 163
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.32 E-value=2.3e-06 Score=90.33 Aligned_cols=109 Identities=24% Similarity=0.343 Sum_probs=72.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhh----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ---------------------------------- 233 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~---------------------------------- 233 (419)
+.++++..+.+.||+|+|||||++.+++.. ..+-+.+++.++..
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 443 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG 443 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC
Confidence 456788889999999999999999999754 23344444322100
Q ss_pred ---------------------hhh-----------chhHHHHHHH--HHHHHhhCCceEEecccccccccccCCCCCCCC
Q 014743 234 ---------------------KYI-----------GEGSRMVREL--FVMAREHAPSIIFMDEIDSIGSARMESGSGNGD 279 (419)
Q Consensus 234 ---------------------~~~-----------g~~~~~i~~l--f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~ 279 (419)
+++ ....++.++. +..|.-..|.|+++|| ++++.|
T Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDE-----------pts~LD 512 (582)
T 3b5x_A 444 EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDE-----------ATSALD 512 (582)
T ss_pred CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccccCC
Confidence 000 0111122222 2334446799999999 677899
Q ss_pred HHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 280 ~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
+.....+.+.+..+. . +..+|++||+++.+
T Consensus 513 ~~~~~~i~~~l~~~~----~-~~tvi~itH~~~~~ 542 (582)
T 3b5x_A 513 TESERAIQAALDELQ----K-NKTVLVIAHRLSTI 542 (582)
T ss_pred HHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 999988888888762 2 56788899998755
No 164
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.9e-06 Score=91.43 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=42.3
Q ss_pred HHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 249 MAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 249 ~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
.|....|.||++|| |+++.|+.....+.+++..+. ..+..||++||+.+.+..
T Consensus 234 raL~~~p~llllDE-----------Pts~LD~~~~~~l~~~l~~l~----~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 234 MSCVQEADVYMFDE-----------PSSYLDVKQRLNAAQIIRSLL----APTKYVICVEHDLSVLDY 286 (608)
T ss_dssp HHHHSCCSEEEEEC-----------TTTTCCHHHHHHHHHHHHGGG----TTTCEEEEECSCHHHHHH
T ss_pred HHHHhCCCEEEEEC-----------cccCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHH
Confidence 34457899999999 788899998888999998873 235678999999876653
No 165
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.30 E-value=2.4e-06 Score=85.08 Aligned_cols=120 Identities=21% Similarity=0.326 Sum_probs=69.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhhh----hhc------------hhHHHHHHHHHHHH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK----YIG------------EGSRMVRELFVMAR 251 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~~----~~g------------~~~~~i~~lf~~a~ 251 (419)
|++++..++|+||||+|||+|+..+|... +..++.++...-... ..| ..+..+..+-..++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56788889999999999999999998653 456666665432211 111 11222222222334
Q ss_pred hhCCceEEecccccccccccCCCCCCCCH---HHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDS---EVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~---~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
...+.+|+||.+..+.+...-.+ ...+. .-.+.+.+++..+..+....++.||++.+..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g-~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEG-DMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC---------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred cCCCCEEEEeChHHhcccccccc-ccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 46799999999999875321100 00110 1124456666666554456678888776543
No 166
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.28 E-value=2.5e-06 Score=90.25 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=75.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchhh----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQ---------------------------------- 233 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~~---------------------------------- 233 (419)
+.++++..+.+.||+|+|||||+++|++... ..-+.+++.++..
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~ 443 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED 443 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCC
Confidence 4567888999999999999999999998653 2345554432210
Q ss_pred ----------------hhh---------------chhHHHHHHH--HHHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 234 ----------------KYI---------------GEGSRMVREL--FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 234 ----------------~~~---------------g~~~~~i~~l--f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.++ ....++.++. +.+|.-..|.|+++|| ++++.|+
T Consensus 444 ~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDE-----------pts~LD~ 512 (587)
T 3qf4_A 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDD-----------CTSSVDP 512 (587)
T ss_dssp CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEES-----------CCTTSCH
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEC-----------CcccCCH
Confidence 000 0112223333 3444557899999999 7778999
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
.....+.+.+..+. .+..+|++||+++.+
T Consensus 513 ~~~~~i~~~l~~~~-----~~~tvi~itH~l~~~ 541 (587)
T 3qf4_A 513 ITEKRILDGLKRYT-----KGCTTFIITQKIPTA 541 (587)
T ss_dssp HHHHHHHHHHHHHS-----TTCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHhC-----CCCEEEEEecChHHH
Confidence 99999988887762 357789999998765
No 167
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.28 E-value=2.4e-06 Score=90.22 Aligned_cols=110 Identities=25% Similarity=0.327 Sum_probs=74.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchhh---------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQ--------------------------------- 233 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~~--------------------------------- 233 (419)
++.++++..+.+.||+|+|||||++.+++... .+-+.+++.++..
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 442 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART 442 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC
Confidence 34567888899999999999999999998542 2344444322100
Q ss_pred ----------------------hhh-----------chhHHHHHHH--HHHHHhhCCceEEecccccccccccCCCCCCC
Q 014743 234 ----------------------KYI-----------GEGSRMVREL--FVMAREHAPSIIFMDEIDSIGSARMESGSGNG 278 (419)
Q Consensus 234 ----------------------~~~-----------g~~~~~i~~l--f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~ 278 (419)
+++ ....++.++. +..|.-..|.|+++|| ++++.
T Consensus 443 ~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDE-----------pts~L 511 (582)
T 3b60_A 443 EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE-----------ATSAL 511 (582)
T ss_dssp SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEET-----------TTSSC
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC-----------ccccC
Confidence 000 0111222222 3344457899999999 77789
Q ss_pred CHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 279 ~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
|+.....+.+.+.++. . +..+|++||+++.+
T Consensus 512 D~~~~~~i~~~l~~~~----~-~~tvi~itH~~~~~ 542 (582)
T 3b60_A 512 DTESERAIQAALDELQ----K-NRTSLVIAHRLSTI 542 (582)
T ss_dssp CHHHHHHHHHHHHHHH----T-TSEEEEECSCGGGT
T ss_pred CHHHHHHHHHHHHHHh----C-CCEEEEEeccHHHH
Confidence 9999998988888763 2 56788999998754
No 168
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.27 E-value=3.4e-06 Score=86.31 Aligned_cols=129 Identities=20% Similarity=0.216 Sum_probs=96.6
Q ss_pred CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC-------------cchhhHHhcCC
Q 014743 255 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR-------------IDILDQALLRP 321 (419)
Q Consensus 255 psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~-------------~~~ld~allr~ 321 (419)
|.|+||||+|.+ +.+.++.|+..+.+ ...++ +|++||. +..++|.+++
T Consensus 296 ~~VliIDEa~~l------------~~~a~~aLlk~lEe-----~~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~s- 356 (456)
T 2c9o_A 296 PGVLFVDEVHML------------DIECFTYLHRALES-----SIAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLD- 356 (456)
T ss_dssp ECEEEEESGGGC------------BHHHHHHHHHHTTS-----TTCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHT-
T ss_pred ceEEEEechhhc------------CHHHHHHHHHHhhc-----cCCCE-EEEecCCccccccccccccccccCChhHHh-
Confidence 469999999995 34556666555432 23344 5555533 7789999999
Q ss_pred CceeEEEEcCCCCHHHHHHHHHHHHhhcccC-CCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 014743 322 GRIDRKIEFPNPNEESRLDILKIHSRRMNLM-RGIDLKKIAEKM-NGASGAELKAVCTEAGMFALRERRIHVTQEDFEMA 399 (419)
Q Consensus 322 gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t-~G~sgadi~~l~~~A~~~a~~~~~~~vt~eD~~~A 399 (419)
||.. +.|++|+.++..+||+......... ++..+..++..+ .| +++....+++.|...|..+++..|+.+|+..|
T Consensus 357 -R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~ 433 (456)
T 2c9o_A 357 -RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEI 433 (456)
T ss_dssp -TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred -hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHH
Confidence 9986 6999999999999998776533321 222356677777 56 88899999999999998888999999999999
Q ss_pred HHHHHh
Q 014743 400 VAKVMK 405 (419)
Q Consensus 400 l~~v~~ 405 (419)
+.-++-
T Consensus 434 ~~~~~d 439 (456)
T 2c9o_A 434 SELFYD 439 (456)
T ss_dssp HHHSCC
T ss_pred HHHhcC
Confidence 987653
No 169
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.27 E-value=1.9e-06 Score=85.64 Aligned_cols=99 Identities=22% Similarity=0.242 Sum_probs=62.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc----CCceEEEeC-cchh---------hhhhchhHHHHHHHHHHHHhhCCceEE
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSG-SELV---------QKYIGEGSRMVRELFVMAREHAPSIIF 259 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~-s~l~---------~~~~g~~~~~i~~lf~~a~~~~psVl~ 259 (419)
++..+++.||+||||||+++++++.+ +..++.+.. .++. ...++.....+...+..|....|.||+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 45578999999999999999999864 223333321 1111 111122122345677788889999999
Q ss_pred ecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 260 MDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 260 iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
+||+- +.+....+.++. ..+..||+|+|..+.+
T Consensus 202 lDEp~--------------d~e~~~~~~~~~--------~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 202 VGEMR--------------DLETIRLALTAA--------ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp ESCCC--------------SHHHHHHHHHHH--------HTTCEEEEEESCSSHH
T ss_pred cCCCC--------------CHHHHHHHHHHH--------hcCCEEEEEEccChHH
Confidence 99941 344444444432 1245689999998765
No 170
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.26 E-value=2.2e-06 Score=89.72 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=44.3
Q ss_pred HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 245 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 245 ~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
-.+..|....|.||++|| |+++.|+.....+.++|..+. ..+..||++||+.+.+..
T Consensus 167 v~iAraL~~~P~lLlLDE-----------PTs~LD~~~~~~l~~~L~~l~----~~g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 167 VAIAAALLRNATFYFFDE-----------PSSYLDIRQRLNAARAIRRLS----EEGKSVLVVEHDLAVLDY 223 (538)
T ss_dssp HHHHHHHHSCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHH
Confidence 334445567899999999 888899999888999988873 236789999998776543
No 171
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.25 E-value=2.1e-06 Score=86.57 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=69.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---------CCceEEEeCcchhh--------hhhch---------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGSELVQ--------KYIGE--------------- 238 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---------~~~~i~v~~s~l~~--------~~~g~--------------- 238 (419)
|+.++..++|+||||||||+|++.++-.. +...++++..+... ..+|.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 68888889999999999999999776321 23477777654210 11110
Q ss_pred ----hHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 239 ----GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 239 ----~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
....+..+...+....|.+|+||++-.++...... .+.-.+.++.+.+++..+..+....++.||++++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg--~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG--RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 01122333344455789999999998876543211 011122333444555554444445578899998874
No 172
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.25 E-value=2e-06 Score=85.09 Aligned_cols=123 Identities=19% Similarity=0.197 Sum_probs=69.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc---------CCceEEEeCcchh---------hhh------------hch-
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGSELV---------QKY------------IGE- 238 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~---------~~~~i~v~~s~l~---------~~~------------~g~- 238 (419)
.|++++..+.|+||||+|||+|++.++... +...++++..+.. ..+ +..
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 477888889999999999999999999865 1345777765421 000 000
Q ss_pred -hHHHHHHHHH----HHHh-----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEe
Q 014743 239 -GSRMVRELFV----MARE-----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMAT 308 (419)
Q Consensus 239 -~~~~i~~lf~----~a~~-----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tT 308 (419)
......++++ .+.. ..|.+|+|||+-+++....+. .+.-.+-...+.+++..+..+....++.||+++
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~--~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~ 283 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG--RGALAERQQKLAKHLADLHRLANLYDIAVFVTN 283 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCS--TTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcc--cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 0111222232 2333 579999999988866332110 000011112244444444333344578889998
Q ss_pred CCcchh
Q 014743 309 NRIDIL 314 (419)
Q Consensus 309 n~~~~l 314 (419)
+.....
T Consensus 284 h~~~~~ 289 (349)
T 1pzn_A 284 QVQARP 289 (349)
T ss_dssp ECC---
T ss_pred cccccc
Confidence 876544
No 173
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.25 E-value=1.8e-06 Score=83.39 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=68.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeC--------cch--------h-------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSG--------SEL--------V------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~--------s~l--------~------------------- 232 (419)
+.+.++..+.|.||+|+|||||+++|++... ..-+.+++ ..+ +
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l 138 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQL 138 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhCh
Confidence 4567788899999999999999999997531 11111111 000 0
Q ss_pred ----hhh-----------hchhHHHHHH--HHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHH-HHcc
Q 014743 233 ----QKY-----------IGEGSRMVRE--LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL-NQLD 294 (419)
Q Consensus 233 ----~~~-----------~g~~~~~i~~--lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL-~~l~ 294 (419)
..+ .+...++.++ .+..|....|.++++|| |+++.|+.....+.+++ ..+
T Consensus 139 ~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE-----------Pts~LD~~~~~~i~~~ll~~~- 206 (290)
T 2bbs_A 139 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS-----------PFGYLDVLTEKEIFESCVCKL- 206 (290)
T ss_dssp HHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEES-----------TTTTCCHHHHHHHHHHCCCCC-
T ss_pred HHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHh-
Confidence 000 0122222222 33445567899999999 77789998888777753 332
Q ss_pred ccccCCCeEEEEEeCCcchh
Q 014743 295 GFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 295 ~~~~~~~v~VI~tTn~~~~l 314 (419)
. .+..||++||+.+.+
T Consensus 207 ---~-~~~tviivtHd~~~~ 222 (290)
T 2bbs_A 207 ---M-ANKTRILVTSKMEHL 222 (290)
T ss_dssp ---T-TTSEEEEECCCHHHH
T ss_pred ---h-CCCEEEEEecCHHHH
Confidence 1 256789999998765
No 174
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.24 E-value=2e-06 Score=84.12 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=71.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---------CCceEEEeCcchh--h------hhhch---------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGSELV--Q------KYIGE--------------- 238 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---------~~~~i~v~~s~l~--~------~~~g~--------------- 238 (419)
|++++..++|+||||+|||+++..+|... +...++++...-+ . ...|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 67888889999999999999999998753 4566777665421 0 00110
Q ss_pred -hH---HHHHHHHHHHHh-hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 239 -GS---RMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 239 -~~---~~i~~lf~~a~~-~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
.+ ..+..+...++. ..|.+|+||.+..+.....+. .+...+.+..+.+++..+..+....++.||++.+....
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG--RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT--TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 11 123344445555 778999999999987532211 01111222345555555554444557778887654433
No 175
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.23 E-value=3.6e-05 Score=80.78 Aligned_cols=168 Identities=16% Similarity=0.190 Sum_probs=94.8
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc-------CCceEEEeCcch--
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSEL-- 231 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~-------~~~~i~v~~s~l-- 231 (419)
..++|.+..++.|.+.+... -..++.++++||+|+|||+||+.+++.. ....+.++.+..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~ 192 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK 192 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH
T ss_pred CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch
Confidence 57899999999999988642 0235678999999999999999997532 223333333221
Q ss_pred ---hhhh------hc----------hh-HHHHHHHHHHHHh-hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHH
Q 014743 232 ---VQKY------IG----------EG-SRMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 290 (419)
Q Consensus 232 ---~~~~------~g----------~~-~~~i~~lf~~a~~-~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL 290 (419)
.... .+ .. ......+...... ..|.+|+||+++.. . .+
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--------------~-------~l 251 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--------------W-------VL 251 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--------------H-------HH
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--------------H-------HH
Confidence 1111 11 01 1111222222222 26899999998651 1 12
Q ss_pred HHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCC
Q 014743 291 NQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGAS 368 (419)
Q Consensus 291 ~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~s 368 (419)
..+ ..+..||+||........ . .+..-.+....+.+.++-.++|......-..........|+..+.|.-
T Consensus 252 ~~l-----~~~~~ilvTsR~~~~~~~-~--~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 252 KAF-----DSQCQILLTTRDKSVTDS-V--MGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp HTT-----CSSCEEEEEESCGGGGTT-C--CSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred HHh-----cCCCeEEEECCCcHHHHh-c--CCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 222 235678888876543221 1 122211112246788888888887664311111233678888998854
No 176
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.22 E-value=6.5e-06 Score=90.89 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=65.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhc-----cCC----c----------eEEEeCcchhhhhhchhHHHHHHHHHHHH-
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHH-----TDC----T----------FIRVSGSELVQKYIGEGSRMVRELFVMAR- 251 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~-----~~~----~----------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~- 251 (419)
+.++..++|.||+|+||||+.|.++.. .+. . +-++...+......+......+++...++
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh
Confidence 445667899999999999999998741 111 1 11122222222222222233333333333
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHH-HHHHHHccccccCCCeEEEEEeCCcchhhHHhcCC
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGFEASNKIKVLMATNRIDILDQALLRP 321 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l-~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~ 321 (419)
...|++|++|| ++.+.++.....+ ..++..+. ...+..+|++||..+...-+-..+
T Consensus 750 a~~p~LlLLDE-----------P~~GlD~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~~l~~~~~ 806 (918)
T 3thx_B 750 ATSQSLVILDE-----------LGRGTSTHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVCELEKNYS 806 (918)
T ss_dssp CCTTCEEEEES-----------TTTTSCHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGGHHHHTT
T ss_pred ccCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHHHHHhhcc
Confidence 46799999999 4556777554444 46776652 224678999999987665433333
No 177
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.22 E-value=2.8e-06 Score=84.31 Aligned_cols=121 Identities=20% Similarity=0.291 Sum_probs=67.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh----hhhch-----------hHHHHHHHHH-HHH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ----KYIGE-----------GSRMVRELFV-MAR 251 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~----~~~g~-----------~~~~i~~lf~-~a~ 251 (419)
|++++..++|+||||+|||+||..+|... +..++.++...-.. ...|. ....+..++. .++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56788889999999999999999998753 55677777632211 11111 1122223332 334
Q ss_pred hhCCceEEeccccccccccc-CCCCCCCCH-HHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 252 EHAPSIIFMDEIDSIGSARM-ESGSGNGDS-EVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~-~~~~~~~~~-~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
...+.+|+||.+..+.+... +...+..+. .-.+.+.+++..+..+....++.||++.+..
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 57899999999999875321 100000000 1113344555554433344567788776543
No 178
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.22 E-value=3.4e-06 Score=88.27 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=43.1
Q ss_pred HHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 247 FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 247 f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
+..|....|.||++|| |+++.|+.....+.+++..+. . +..||++||+.+.+..
T Consensus 149 iA~aL~~~p~illlDE-----------Pts~LD~~~~~~l~~~l~~l~----~-g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 149 VAASLLREADVYIFDQ-----------PSSYLDVRERMNMAKAIRELL----K-NKYVIVVDHDLIVLDY 202 (538)
T ss_dssp HHHHHHSCCSEEEEES-----------TTTTCCHHHHHHHHHHHHHHC----T-TSEEEEECSCHHHHHH
T ss_pred HHHHHHcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHh----C-CCEEEEEEeChHHHHh
Confidence 3445567899999999 788899998888999998873 2 5779999999876543
No 179
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.20 E-value=4.2e-06 Score=82.58 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=70.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---------CCceEEEeCcchhh--------hhhch---------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGSELVQ--------KYIGE--------------- 238 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---------~~~~i~v~~s~l~~--------~~~g~--------------- 238 (419)
|++++..++|+||||+|||+++..+|... +...++++...-+. ...|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 67777889999999999999999998752 44567776644210 00110
Q ss_pred -hH---HHHHHHHHHHHh--hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc
Q 014743 239 -GS---RMVRELFVMARE--HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID 312 (419)
Q Consensus 239 -~~---~~i~~lf~~a~~--~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~ 312 (419)
.+ ..+..+...++. ..+.+|+||.+..+.....+. .+...+-+..+.+++..+..+....++.||++++...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG--GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 11 122233344555 678999999999987542110 0011111223455555554444555788888776544
Q ss_pred h
Q 014743 313 I 313 (419)
Q Consensus 313 ~ 313 (419)
.
T Consensus 276 ~ 276 (343)
T 1v5w_A 276 D 276 (343)
T ss_dssp -
T ss_pred c
Confidence 3
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.19 E-value=8.7e-06 Score=75.15 Aligned_cols=110 Identities=22% Similarity=0.242 Sum_probs=64.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh----hh-------------------------hh--
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV----QK-------------------------YI-- 236 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~----~~-------------------------~~-- 236 (419)
|++++..++|+||||+|||+++..++... +...+.++...-. .. .+
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 98 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGK 98 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhccc
Confidence 67888899999999999999998887532 4455555443210 00 00
Q ss_pred ------------chhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEE
Q 014743 237 ------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 304 (419)
Q Consensus 237 ------------g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~V 304 (419)
.........+.+.+....|.+|++|++..+... ......+.+..+...+ ...++.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~--------~~~~~~~~l~~l~~~~----~~~~~~v 166 (247)
T 2dr3_A 99 SKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYIN--------KPAMARSIILQLKRVL----AGTGCTS 166 (247)
T ss_dssp --CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTT--------CGGGHHHHHHHHHHHH----HHTTCEE
T ss_pred ccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcC--------CHHHHHHHHHHHHHHH----HHCCCeE
Confidence 011112333444445678999999999987521 1112334444444433 2346778
Q ss_pred EEEeCCcc
Q 014743 305 LMATNRID 312 (419)
Q Consensus 305 I~tTn~~~ 312 (419)
|++++...
T Consensus 167 i~~~h~~~ 174 (247)
T 2dr3_A 167 IFVSQVSV 174 (247)
T ss_dssp EEEEECC-
T ss_pred EEEecCCC
Confidence 88887654
No 181
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.18 E-value=3.8e-06 Score=89.10 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=44.0
Q ss_pred HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 245 ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 245 ~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
-.+..|....|.||++|| |+++.|+.....+.++|..+. ..+..||++||+.+.+.
T Consensus 237 vaIAraL~~~P~lLlLDE-----------PTs~LD~~~~~~l~~~L~~l~----~~g~tvIivsHdl~~~~ 292 (607)
T 3bk7_A 237 VAIAAALLRKAHFYFFDE-----------PSSYLDIRQRLKVARVIRRLA----NEGKAVLVVEHDLAVLD 292 (607)
T ss_dssp HHHHHHHHSCCSEEEEEC-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECSCHHHHH
T ss_pred HHHHHHHhcCCCEEEEEC-----------CcccCCHHHHHHHHHHHHHHH----hcCCEEEEEecChHHHH
Confidence 334445567899999999 788899999999999998873 23678999999877654
No 182
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.18 E-value=3.5e-06 Score=89.24 Aligned_cols=111 Identities=24% Similarity=0.312 Sum_probs=74.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchhh--------------------------------h
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELVQ--------------------------------K 234 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~~--------------------------------~ 234 (419)
++.++++..+.|.||+|+|||||++.|++... .+-+.+++.++.. .
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 443 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 443 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCC
Confidence 34567888999999999999999999998542 2334444321100 0
Q ss_pred h--------------------------------h----chhHHHHHHH--HHHHHhhCCceEEecccccccccccCCCCC
Q 014743 235 Y--------------------------------I----GEGSRMVREL--FVMAREHAPSIIFMDEIDSIGSARMESGSG 276 (419)
Q Consensus 235 ~--------------------------------~----g~~~~~i~~l--f~~a~~~~psVl~iDEiD~l~~~r~~~~~~ 276 (419)
. + ....++.++. +..|.-..|.|+++|| +++
T Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDE-----------pts 512 (595)
T 2yl4_A 444 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDE-----------ATS 512 (595)
T ss_dssp STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEEC-----------CCS
T ss_pred CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC-----------ccc
Confidence 0 0 0111222222 3344457899999999 777
Q ss_pred CCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 277 NGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 277 ~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+.|+.....+.+.+.++. . +..+|++||+++.+.
T Consensus 513 ~LD~~~~~~i~~~l~~~~----~-~~tvi~itH~~~~~~ 546 (595)
T 2yl4_A 513 ALDAENEYLVQEALDRLM----D-GRTVLVIAHRLSTIK 546 (595)
T ss_dssp SCCHHHHHHHHHHHHHHH----T-TSEEEEECCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh----c-CCEEEEEecCHHHHH
Confidence 899999999998888763 2 467889999987653
No 183
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.18 E-value=1.4e-06 Score=85.68 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=65.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhh-----h---hhchhHHHHHHHHHHHHhhCCceEEec
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ-----K---YIGEGSRMVRELFVMAREHAPSIIFMD 261 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~-----~---~~g~~~~~i~~lf~~a~~~~psVl~iD 261 (419)
+.++..+++.||+|+|||||+++|++.. ....+.+++..... . ++..+....+..+..|....|.+|++|
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEc
Confidence 3567789999999999999999999975 34567776543211 1 110022345567777888899999999
Q ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 262 EIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 262 EiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
|.-. .++ .+++..+. .++..+|+|||+.+.
T Consensus 248 E~~~--------------~e~----~~~l~~~~----~g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 248 ELRS--------------SEA----YDFYNVLC----SGHKGTLTTLHAGSS 277 (330)
T ss_dssp CCCS--------------THH----HHHHHHHH----TTCCCEEEEEECSSH
T ss_pred CCCh--------------HHH----HHHHHHHh----cCCCEEEEEEcccHH
Confidence 9422 122 33444442 234457889998763
No 184
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.16 E-value=3.9e-06 Score=79.94 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
|+.++..++|+||||+|||||++.++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5677888999999999999999999863
No 185
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.14 E-value=5.1e-06 Score=88.12 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=71.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccC---------CceEEEeCc----------chhh-------------------
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGS----------ELVQ------------------- 233 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~---------~~~i~v~~s----------~l~~------------------- 233 (419)
+.++..+.|.||+|+|||||+|+|++... ..+-.+... +++.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 45677899999999999999999998531 111111100 0000
Q ss_pred --------hhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeE
Q 014743 234 --------KYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 303 (419)
Q Consensus 234 --------~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 303 (419)
+.++..+++- +-.+..|....|.||++|| |+++.|...+..+.++|..+. ...+..
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDE-----------Pt~~LD~~~~~~l~~~l~~l~---~~~g~t 524 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDE-----------PSAYLDVEQRLAVSRAIRHLM---EKNEKT 524 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC-----------TTTTCCHHHHHHHHHHHHHHH---HHTTCE
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC-----------CccCCCHHHHHHHHHHHHHHH---HhCCCE
Confidence 0111111222 2333344557899999999 788899999999999988762 234567
Q ss_pred EEEEeCCcchhhH
Q 014743 304 VLMATNRIDILDQ 316 (419)
Q Consensus 304 VI~tTn~~~~ld~ 316 (419)
||++||+.+.+..
T Consensus 525 vi~vsHd~~~~~~ 537 (607)
T 3bk7_A 525 ALVVEHDVLMIDY 537 (607)
T ss_dssp EEEECSCHHHHHH
T ss_pred EEEEeCCHHHHHH
Confidence 8999999876643
No 186
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.14 E-value=4.7e-06 Score=95.85 Aligned_cols=110 Identities=21% Similarity=0.361 Sum_probs=76.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhh----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ---------------------------------- 233 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~---------------------------------- 233 (419)
+.++++..+.++||+|+|||||+++|.+.. ..+-+.+|+-++..
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~ 1179 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP 1179 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC
Confidence 457888999999999999999999999865 34566666533210
Q ss_pred ----------------------h-------hhch----hHHHHHHHHHHHH--hhCCceEEecccccccccccCCCCCCC
Q 014743 234 ----------------------K-------YIGE----GSRMVRELFVMAR--EHAPSIIFMDEIDSIGSARMESGSGNG 278 (419)
Q Consensus 234 ----------------------~-------~~g~----~~~~i~~lf~~a~--~~~psVl~iDEiD~l~~~r~~~~~~~~ 278 (419)
. .+|+ ..++-++.+..|| -..|.||+||| ++++.
T Consensus 1180 ~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDE-----------aTSaL 1248 (1321)
T 4f4c_A 1180 SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE-----------ATSAL 1248 (1321)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEES-----------CCCST
T ss_pred CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeC-----------ccccC
Confidence 0 0111 1233345555444 46899999999 55668
Q ss_pred CHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 279 ~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|++....+.+.|+.. ..+.++|+.|||.+.+.
T Consensus 1249 D~~tE~~Iq~~l~~~-----~~~~TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A 1249 DTESEKVVQEALDRA-----REGRTCIVIAHRLNTVM 1280 (1321)
T ss_dssp TSHHHHHHHHHHTTT-----SSSSEEEEECSSSSTTT
T ss_pred CHHHHHHHHHHHHHH-----cCCCEEEEeccCHHHHH
Confidence 888888888877654 24567888999988764
No 187
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.12 E-value=1e-05 Score=84.37 Aligned_cols=114 Identities=23% Similarity=0.276 Sum_probs=75.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHH--HHhcc--CCceEEEeCcchhh------hhhch----------------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARA--VAHHT--DCTFIRVSGSELVQ------KYIGE---------------------- 238 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~Laka--lA~~~--~~~~i~v~~s~l~~------~~~g~---------------------- 238 (419)
+++++..++|.||||||||||++. ++... +...+.+++.+... ..+|.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence 567889999999999999999999 44432 45667776643210 00110
Q ss_pred --------hHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC
Q 014743 239 --------GSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR 310 (419)
Q Consensus 239 --------~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~ 310 (419)
.......+........|.+|+|||+-.+.+. .+.++..++.+.+++..+. ..++.||++|++
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~------~~lD~~~~~~l~~ll~~l~----~~g~tvl~itH~ 184 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ------YDASSVVRRELFRLVARLK----QIGATTVMTTER 184 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT------TCCHHHHHHHHHHHHHHHH----HHTCEEEEEEEC
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh------cCCHHHHHHHHHHHHHHHH----HCCCEEEEEecC
Confidence 1122334444555678999999998775432 2245677778888888773 236789999999
Q ss_pred cchh
Q 014743 311 IDIL 314 (419)
Q Consensus 311 ~~~l 314 (419)
.+.+
T Consensus 185 ~~~~ 188 (525)
T 1tf7_A 185 IEEY 188 (525)
T ss_dssp SSSS
T ss_pred CCCc
Confidence 8764
No 188
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.11 E-value=4.9e-06 Score=89.29 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=47.3
Q ss_pred hhchhHHHHHHHHHHHHhh--C---CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeC
Q 014743 235 YIGEGSRMVRELFVMAREH--A---PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATN 309 (419)
Q Consensus 235 ~~g~~~~~i~~lf~~a~~~--~---psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn 309 (419)
+++..++..++....|+.. . |.||++|| |+++.|+.....+.+++..+. ..+..||++||
T Consensus 540 ~~~~LSgG~~qrv~iAraL~~~p~~p~llllDE-----------Pt~~LD~~~~~~i~~~l~~l~----~~g~tvi~vtH 604 (670)
T 3ux8_A 540 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDE-----------PTTGLHVDDIARLLDVLHRLV----DNGDTVLVIEH 604 (670)
T ss_dssp CGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEES-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECC
T ss_pred CchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeC-----------CCCCCCHHHHHHHHHHHHHHH----HCCCEEEEEeC
Confidence 3445555555555555543 3 46999999 788899999999999998873 23678999999
Q ss_pred Ccchh
Q 014743 310 RIDIL 314 (419)
Q Consensus 310 ~~~~l 314 (419)
+.+.+
T Consensus 605 d~~~~ 609 (670)
T 3ux8_A 605 NLDVI 609 (670)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87643
No 189
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.09 E-value=1.2e-05 Score=85.09 Aligned_cols=107 Identities=20% Similarity=0.190 Sum_probs=69.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHhcc----CC-----ceEEEeC--------c--ch-------------------------
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHT----DC-----TFIRVSG--------S--EL------------------------- 231 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~----~~-----~~i~v~~--------s--~l------------------------- 231 (419)
..+.|.||+|+|||||+++|++.. +. .+-.+.. + ++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 348899999999999999999753 11 1111100 0 00
Q ss_pred --hhhhhchhHHHHHHH--HHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEE
Q 014743 232 --VQKYIGEGSRMVREL--FVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMA 307 (419)
Q Consensus 232 --~~~~~g~~~~~i~~l--f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~t 307 (419)
..++++..+++-++- +..|....|.||++|| |+++.|......+.+++.++. ...+..||++
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE-----------PT~gLD~~~~~~i~~ll~~l~---~~~g~tviiv 524 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE-----------PSAYLDSEQRIICSKVIRRFI---LHNKKTAFIV 524 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC-----------TTTTCCHHHHHHHHHHHHHHH---HHHTCEEEEE
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH---HhCCCEEEEE
Confidence 011222333333333 3444457899999999 788899998888888887762 1235778999
Q ss_pred eCCcchhhH
Q 014743 308 TNRIDILDQ 316 (419)
Q Consensus 308 Tn~~~~ld~ 316 (419)
||+.+.+..
T Consensus 525 tHdl~~~~~ 533 (608)
T 3j16_B 525 EHDFIMATY 533 (608)
T ss_dssp CSCHHHHHH
T ss_pred eCCHHHHHH
Confidence 999876543
No 190
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.08 E-value=1.4e-05 Score=83.71 Aligned_cols=111 Identities=22% Similarity=0.242 Sum_probs=72.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccC---------CceEEEeCc----------chh--------------------
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGS----------ELV-------------------- 232 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~---------~~~i~v~~s----------~l~-------------------- 232 (419)
+.++..+.|.||+|+|||||+++|++... ..+-.+... +++
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 35677899999999999999999998531 111111110 000
Q ss_pred -------hhhhchhHHHH--HHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeE
Q 014743 233 -------QKYIGEGSRMV--RELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 303 (419)
Q Consensus 233 -------~~~~g~~~~~i--~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 303 (419)
.+.++..++.- +-.+..|....|.||++|| |+++.|...+..+.++|..+. ...+..
T Consensus 389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE-----------Pt~~LD~~~~~~i~~~l~~l~---~~~g~t 454 (538)
T 1yqt_A 389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE-----------PSAYLDVEQRLAVSRAIRHLM---EKNEKT 454 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC-----------TTTTCCHHHHHHHHHHHHHHH---HHHTCE
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC-----------CcccCCHHHHHHHHHHHHHHH---HhCCCE
Confidence 00111212222 3344445567899999999 888899999999999988762 123567
Q ss_pred EEEEeCCcchhhH
Q 014743 304 VLMATNRIDILDQ 316 (419)
Q Consensus 304 VI~tTn~~~~ld~ 316 (419)
||++||+.+.+..
T Consensus 455 vi~vsHd~~~~~~ 467 (538)
T 1yqt_A 455 ALVVEHDVLMIDY 467 (538)
T ss_dssp EEEECSCHHHHHH
T ss_pred EEEEeCCHHHHHH
Confidence 8999999876643
No 191
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.05 E-value=6.6e-05 Score=84.81 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=98.2
Q ss_pred ccccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhc-------cCCceEEEeCcchhh
Q 014743 161 DMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSELVQ 233 (419)
Q Consensus 161 ~~I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~-------~~~~~i~v~~s~l~~ 233 (419)
..++|.++.+++|.+.+... -..++-+.|+|+.|+|||+||+.+++. ....++.++.+....
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred ceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 57899999999999988542 123566889999999999999999875 223344454333100
Q ss_pred -----h------hhc----------hhHHHHHHHHHHHHh--hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHH
Q 014743 234 -----K------YIG----------EGSRMVRELFVMARE--HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELL 290 (419)
Q Consensus 234 -----~------~~g----------~~~~~i~~lf~~a~~--~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL 290 (419)
. ..+ .....+...+..... ..+.+|+||+++.. . .+
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--------------~-------~~ 251 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--------------W-------VL 251 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--------------H-------HH
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--------------H-------HH
Confidence 0 000 111112222222222 33789999998752 1 11
Q ss_pred HHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCC-CCHHHHHHHHHHHHhhcccCCCCCHHHHHHHcCCCC
Q 014743 291 NQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPN-PNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGAS 368 (419)
Q Consensus 291 ~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~-P~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~G~s 368 (419)
..+ ..+..||+||......... . .....+.+++ ++.++-.++|..+.....-........|++.+.|.-
T Consensus 252 ~~~-----~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 252 KAF-----DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp TTT-----CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred Hhh-----cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 111 2356788888866543211 1 2345677775 888888888887653322111223567888888853
No 192
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.04 E-value=7.8e-06 Score=90.56 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=71.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHh-cc-C------CceEEEeCc-----------c--------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAH-HT-D------CTFIRVSGS-----------E-------------------- 230 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~-~~-~------~~~i~v~~s-----------~-------------------- 230 (419)
+.+.++..+.|.||+|+|||||+|+|++ .. + .....+... +
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~l 535 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF 535 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHc
Confidence 3456778899999999999999999994 11 0 111111100 0
Q ss_pred -----hhhhhhchhHHHHH--HHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeE
Q 014743 231 -----LVQKYIGEGSRMVR--ELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 303 (419)
Q Consensus 231 -----l~~~~~g~~~~~i~--~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 303 (419)
+..++++..+++.+ -.+..|....|.||++|| |+++.|......+.++|.. .+..
T Consensus 536 gL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE-----------PTs~LD~~~~~~l~~~L~~-------~g~t 597 (986)
T 2iw3_A 536 GFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE-----------PTNHLDTVNVAWLVNYLNT-------CGIT 597 (986)
T ss_dssp TCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES-----------TTTTCCHHHHHHHHHHHHH-------SCSE
T ss_pred CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC-----------CccCCCHHHHHHHHHHHHh-------CCCE
Confidence 00111222222223 333445567899999999 7888999998888888875 2567
Q ss_pred EEEEeCCcchhhH
Q 014743 304 VLMATNRIDILDQ 316 (419)
Q Consensus 304 VI~tTn~~~~ld~ 316 (419)
||++||+.+.+..
T Consensus 598 vIivSHdl~~l~~ 610 (986)
T 2iw3_A 598 SITISHDSVFLDN 610 (986)
T ss_dssp EEEECSCHHHHHH
T ss_pred EEEEECCHHHHHH
Confidence 8899999876654
No 193
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.04 E-value=6.8e-06 Score=78.84 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=27.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
+|+.++.-++|.||||+|||||++.+|...
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578888999999999999999999999754
No 194
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.03 E-value=2.8e-05 Score=86.04 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=59.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhc-----cCCc--------------eEEEeCcchhhhhhchhHHHHHHHHHHHH-h
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHH-----TDCT--------------FIRVSGSELVQKYIGEGSRMVRELFVMAR-E 252 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~-----~~~~--------------~i~v~~s~l~~~~~g~~~~~i~~lf~~a~-~ 252 (419)
..+..++|.||+|+||||+.|.++.. .+.. +-++...+..............++...++ .
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a 739 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSA 739 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhc
Confidence 34456899999999999999999531 1110 11122222222222222222223222221 4
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHH-HHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l-~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
..|++|+||| ++.+.++.....+ ..++..+. ...+..+|++||..+..
T Consensus 740 ~~~sLlLLDE-----------p~~GlD~~~~~~i~~~il~~l~---~~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 740 TKDSLIIIDE-----------LGRGTSTYDGFGLAWAISEYIA---TKIGAFCMFATHFHELT 788 (934)
T ss_dssp CTTCEEEEES-----------CSCSSCHHHHHHHHHHHHHHHH---HTTCCEEEEEESCGGGG
T ss_pred cCCcEEEEeC-----------CCCCCCHHHHHHHHHHHHHHHH---hcCCCEEEEEcCcHHHH
Confidence 6799999999 4455666544333 66666653 22467889999997644
No 195
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.02 E-value=1.8e-05 Score=90.87 Aligned_cols=111 Identities=19% Similarity=0.321 Sum_probs=75.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchh----------------------------------
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELV---------------------------------- 232 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~---------------------------------- 232 (419)
++.++++..+.|.||+|+|||||+++|++... .+-+.+++.++.
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~ 489 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE 489 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC
Confidence 34567888999999999999999999998653 345555543210
Q ss_pred --------------------hhh-------hc----hhHHHHHHHHH--HHHhhCCceEEecccccccccccCCCCCCCC
Q 014743 233 --------------------QKY-------IG----EGSRMVRELFV--MAREHAPSIIFMDEIDSIGSARMESGSGNGD 279 (419)
Q Consensus 233 --------------------~~~-------~g----~~~~~i~~lf~--~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~ 279 (419)
..+ +| ...++.++... +|.-..|.|+++|| ++++.|
T Consensus 490 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDE-----------pts~LD 558 (1284)
T 3g5u_A 490 DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDE-----------ATSALD 558 (1284)
T ss_dssp SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEES-----------TTCSSC
T ss_pred CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEEC-----------CCCCCC
Confidence 000 01 11223333333 44457899999999 677789
Q ss_pred HHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 280 SEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 280 ~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
++....+.+.+.... .+..+|+.||+.+.+.
T Consensus 559 ~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 559 TESEAVVQAALDKAR-----EGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp HHHHHHHHHHHHHHH-----TTSEEEEECSCHHHHT
T ss_pred HHHHHHHHHHHHHHc-----CCCEEEEEecCHHHHH
Confidence 888888888887652 3567889999987664
No 196
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.02 E-value=1.2e-05 Score=86.32 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=46.6
Q ss_pred hchhHHHHHHHHHHHH--hhCCc--eEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 236 IGEGSRMVRELFVMAR--EHAPS--IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 236 ~g~~~~~i~~lf~~a~--~~~ps--Vl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
++..++..++....|+ ...|. ||++|| |+++.|+.....+.++|..+. ..+..||++||+.
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~p~~~lLlLDE-----------PtsgLD~~~~~~l~~~l~~l~----~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDE-----------PSIGLHQRDNDRLIATLKSMR----DLGNTLIVVEHDE 264 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCCSCEEEEEC-----------TTTTCCGGGHHHHHHHHHHHH----HTTCEEEEECCCH
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEEC-----------CccCCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCH
Confidence 4444445555555554 45677 999999 788899988888999998873 2367899999997
Q ss_pred chh
Q 014743 312 DIL 314 (419)
Q Consensus 312 ~~l 314 (419)
+.+
T Consensus 265 ~~~ 267 (670)
T 3ux8_A 265 DTM 267 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 197
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.02 E-value=1.1e-05 Score=70.88 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
|..|+|.|||||||||+++.|+..++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4678999999999999999999999988888766544
No 198
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=98.01 E-value=1.1e-05 Score=78.52 Aligned_cols=120 Identities=13% Similarity=0.227 Sum_probs=67.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEeCcchhh----hhhchh--------HHHHHHH-H---HH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQ----KYIGEG--------SRMVREL-F---VM 249 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~~s~l~~----~~~g~~--------~~~i~~l-f---~~ 249 (419)
|++++ .++++||||+|||+|+-.++... +...++++..+-.. ..+|.. +....++ + +.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56666 78999999999999988776533 45677777653221 111110 0011222 2 22
Q ss_pred ---HHhhCCceEEecccccccccc-cCCCCCCCCH---HHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 250 ---AREHAPSIIFMDEIDSIGSAR-MESGSGNGDS---EVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 250 ---a~~~~psVl~iDEiD~l~~~r-~~~~~~~~~~---~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
++...|.+|++|-|-++.+.. .+...+..+. .-.+.+.+.|..+..+....++.||++-+-.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 245689999999999997532 1111000000 1235566666665555566788888876543
No 199
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.01 E-value=9.7e-06 Score=73.19 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=21.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHhcc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
..+.|.||+|+||||+++.|++.+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 357899999999999999999854
No 200
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.96 E-value=1.2e-05 Score=92.50 Aligned_cols=111 Identities=19% Similarity=0.315 Sum_probs=72.5
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcchh-----------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSELV----------------------------------- 232 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l~----------------------------------- 232 (419)
+.++++..+.+.||+|||||||+++|.+.++ .+-+.+++.++.
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~ 518 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG 518 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTT
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhccc
Confidence 4567888999999999999999999998763 345566553210
Q ss_pred -------------------hh-------hhch----hHHHHHHHH--HHHHhhCCceEEecccccccccccCCCCCCCCH
Q 014743 233 -------------------QK-------YIGE----GSRMVRELF--VMAREHAPSIIFMDEIDSIGSARMESGSGNGDS 280 (419)
Q Consensus 233 -------------------~~-------~~g~----~~~~i~~lf--~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~ 280 (419)
.. .+|+ ..++.++.. .+|.-..|.|++||| ++++.|+
T Consensus 519 ~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE-----------~tSaLD~ 587 (1321)
T 4f4c_A 519 ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE-----------ATSALDA 587 (1321)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEES-----------TTTTSCT
T ss_pred chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEec-----------ccccCCH
Confidence 00 1121 122333333 444457899999999 4455666
Q ss_pred HHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhH
Q 014743 281 EVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQ 316 (419)
Q Consensus 281 ~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~ 316 (419)
.....+.+.+..+. .+.++|+.||+++.+..
T Consensus 588 ~te~~i~~~l~~~~-----~~~T~iiiaHrls~i~~ 618 (1321)
T 4f4c_A 588 ESEGIVQQALDKAA-----KGRTTIIIAHRLSTIRN 618 (1321)
T ss_dssp TTHHHHHHHHHHHH-----TTSEEEEECSCTTTTTT
T ss_pred HHHHHHHHHHHHHh-----CCCEEEEEcccHHHHHh
Confidence 66666777776542 34567888999887643
No 201
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.96 E-value=9.8e-06 Score=78.87 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=69.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---------------C----CceEEEeCcchh--h------hhhch-----
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---------------D----CTFIRVSGSELV--Q------KYIGE----- 238 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---------------~----~~~i~v~~s~l~--~------~~~g~----- 238 (419)
|++++.-++|+||||+|||+++..+|... + ..+++++...-+ . ...|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 67778889999999999999999998642 2 456666654321 1 00110
Q ss_pred -----------hH---HHHHHHHHHHHh-hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeE
Q 014743 239 -----------GS---RMVRELFVMARE-HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 303 (419)
Q Consensus 239 -----------~~---~~i~~lf~~a~~-~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 303 (419)
.+ ..+..+...++. ..+.+|+||.+..+.....+. .+...+-+..+.+++..+..+....++.
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~--~~~~~~r~~~~~~~~~~L~~la~~~~~~ 251 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG--RGKLAERQQKLGRHMATLNKLADLFNCV 251 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC--TTSHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 01 122334444555 678999999999987532211 0111122234556665555544556777
Q ss_pred EEEEeCC
Q 014743 304 VLMATNR 310 (419)
Q Consensus 304 VI~tTn~ 310 (419)
||++.+.
T Consensus 252 vi~~nq~ 258 (322)
T 2i1q_A 252 VLVTNQV 258 (322)
T ss_dssp EEEEECE
T ss_pred EEEECce
Confidence 7777543
No 202
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.94 E-value=0.00038 Score=70.77 Aligned_cols=195 Identities=14% Similarity=0.149 Sum_probs=103.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh-------------------hhh-chhHHHHHHHHHHH
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ-------------------KYI-GEGSRMVRELFVMA 250 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~-------------------~~~-g~~~~~i~~lf~~a 250 (419)
+|..+++.||+|+||||++..||..+ +..+..+++..+.. .+. ......++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999754 44555555543210 011 12334456777888
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc-chhh--HHhcCCCceeEE
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI-DILD--QALLRPGRIDRK 327 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~-~~ld--~allr~gRfd~~ 327 (419)
+...+.+|++|..-.+ ..+......+..+.... ....+++|+-+... +.++ ..|.....++-
T Consensus 179 ~~~~~DvVIIDTaGrl----------~~d~~lm~el~~i~~~~----~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~g- 243 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH----------KEDKALIEEMKQISNVI----HPHEVILVIDGTIGQQAYNQALAFKEATPIGS- 243 (443)
T ss_dssp HHTTCSEEEEECCCCS----------SCCHHHHHHHHHHHHHH----CCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEE-
T ss_pred HhCCCCEEEEECCCcc----------cchHHHHHHHHHHHHhh----cCceEEEEEeCCCchhHHHHHHHHHhhCCCeE-
Confidence 8888999999975321 12334434444443333 22345555543333 2222 12322122332
Q ss_pred EEcCCCCHHHHHH-HHHHHH-hhccc-----------CCCCCHHHHHHHcCCCCHHHHHHHHHHHHH----------HHH
Q 014743 328 IEFPNPNEESRLD-ILKIHS-RRMNL-----------MRGIDLKKIAEKMNGASGAELKAVCTEAGM----------FAL 384 (419)
Q Consensus 328 I~~~~P~~~~r~~-Il~~~~-~~~~~-----------~~~~dl~~la~~t~G~sgadi~~l~~~A~~----------~a~ 384 (419)
+.+.-.|...+.. ++.... ...++ ....+...++.+.-|+- |+..|+..|.. .+-
T Consensus 244 VIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~g--d~~~l~e~~~~~~~~~~~~~~~~~ 321 (443)
T 3dm5_A 244 IIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLG--DIQGLLEKFKELEKEVEIKEEDIE 321 (443)
T ss_dssp EEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTT--CHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCCC--cHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3333333322222 222111 11111 12244677887776654 88888855422 121
Q ss_pred HhcCCCCCHHHHHHHHHHHHh
Q 014743 385 RERRIHVTQEDFEMAVAKVMK 405 (419)
Q Consensus 385 ~~~~~~vt~eD~~~Al~~v~~ 405 (419)
+-..-..|.+||..-++.+.+
T Consensus 322 k~~~~~f~l~d~~~q~~~~~k 342 (443)
T 3dm5_A 322 RFLRGKFTLKDMYAQLEAMRK 342 (443)
T ss_dssp HHHTTCCCHHHHHHHHHHHHT
T ss_pred HHhhCCcCHHHHHHHHHHHHh
Confidence 112446899999999888764
No 203
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.94 E-value=1.5e-05 Score=81.65 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=37.7
Q ss_pred ccccccccCCCCCccccc-CcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 147 VNLMKVEKVPDSTYDMIG-GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 147 ~~~~~~~~~p~~~~~~I~-G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
.+..++.++.+.+|+++- +|.+++..+...+... ...++|.||||||||+++.+++..+
T Consensus 10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~--------------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEK--------------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -----------CCSSCCCHHHHHHHHHHHHHHHSS--------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCccccCCCccccCCHHHHHHHHHHHHHHhcC--------------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344566778888888885 6777777776666441 2389999999999999999999865
No 204
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.93 E-value=1.2e-05 Score=80.17 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=49.5
Q ss_pred hHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccC---Cc-eEEEeCc-ch--------h-hhhhchhHHHHHHHHHHH
Q 014743 185 ELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---CT-FIRVSGS-EL--------V-QKYIGEGSRMVRELFVMA 250 (419)
Q Consensus 185 ~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~---~~-~i~v~~s-~l--------~-~~~~g~~~~~i~~lf~~a 250 (419)
..+..+.+.++..++|.||+|+||||+++++++.+. .. ++.+... ++ + ...+|.....++..+..+
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHH
Confidence 345555567777899999999999999999998642 22 3233221 11 0 000111122334566666
Q ss_pred HhhCCceEEeccc
Q 014743 251 REHAPSIIFMDEI 263 (419)
Q Consensus 251 ~~~~psVl~iDEi 263 (419)
....|.+|++||+
T Consensus 206 L~~~pd~illdE~ 218 (372)
T 2ewv_A 206 LREDPDVIFVGEM 218 (372)
T ss_dssp TTSCCSEEEESCC
T ss_pred hhhCcCEEEECCC
Confidence 6779999999994
No 205
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.90 E-value=8.2e-06 Score=72.62 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=35.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
++.++..+.|.||||+||||+++.|++.++.+.+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 45677889999999999999999999998888888887665
No 206
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.89 E-value=0.00015 Score=73.68 Aligned_cols=195 Identities=14% Similarity=0.173 Sum_probs=99.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh----------hhhhc----------hhHHHHHHHHHHH
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV----------QKYIG----------EGSRMVRELFVMA 250 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~----------~~~~g----------~~~~~i~~lf~~a 250 (419)
+|..+++.||+|+||||++..||..+ +..+..+++.-+. ....| .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678899999999999999999754 4444444433211 01111 1122234555566
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh-h--HHhcCCCceeEE
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL-D--QALLRPGRIDRK 327 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l-d--~allr~gRfd~~ 327 (419)
....+.+|++|..-.+. ...+......+..++..+ ....+++++.+...... . ..|...-.++ .
T Consensus 176 ~~~~~DvvIIDTaGr~~--------~~~d~~lm~el~~i~~~~----~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~-g 242 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHG--------YGEETKLLEEMKEMYDVL----KPDDVILVIDASIGQKAYDLASRFHQASPIG-S 242 (433)
T ss_dssp TTTTCSEEEEEECCCSS--------SCCTTHHHHHHHHHHHHH----CCSEEEEEEEGGGGGGGHHHHHHHHHHCSSE-E
T ss_pred HhcCCCEEEEECCCCcc--------ccCCHHHHHHHHHHHHhh----CCcceEEEEeCccchHHHHHHHHHhcccCCc-E
Confidence 66789999999853311 002334444444444444 23456666655443322 1 1222111122 3
Q ss_pred EEcCCCCHHH----HHHHHHHHHhhcc-----cC------CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Q 014743 328 IEFPNPNEES----RLDILKIHSRRMN-----LM------RGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE------ 386 (419)
Q Consensus 328 I~~~~P~~~~----r~~Il~~~~~~~~-----~~------~~~dl~~la~~t~G~sgadi~~l~~~A~~~a~~~------ 386 (419)
+.+.-.|... ...+.... ..+ .. ...+...++.+.-|+- |+..|+..|......+
T Consensus 243 VIlTKlD~~a~~G~als~~~~~--g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~g--d~~~l~e~~~~~~~~~~~~~~~ 318 (433)
T 3kl4_A 243 VIITKMDGTAKGGGALSAVVAT--GATIKFIGTGEKIDELETFNAKRFVSRILGMG--DIESILEKVKGLEEYDKIQKKM 318 (433)
T ss_dssp EEEECGGGCSCHHHHHHHHHHH--TCEEEEEECCSSSSCEEECCHHHHHHHHHCSS--HHHHHHHHHHHC----------
T ss_pred EEEecccccccchHHHHHHHHH--CCCEEEEECCCChHhCccCCHHHHHHHhcCCc--hHHHHHHHHHHhhhHHHHHHHH
Confidence 3444444322 22232221 122 11 2234566777655554 8888887664321111
Q ss_pred ---cCC--CCCHHHHHHHHHHHHh
Q 014743 387 ---RRI--HVTQEDFEMAVAKVMK 405 (419)
Q Consensus 387 ---~~~--~vt~eD~~~Al~~v~~ 405 (419)
..- ..|.+||...++.+.+
T Consensus 319 ~k~~~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 319 EDVMEGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp ---------CCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHh
Confidence 122 6899999999998865
No 207
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.87 E-value=3.3e-05 Score=88.66 Aligned_cols=110 Identities=19% Similarity=0.367 Sum_probs=73.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCcch------------------------------------
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGSEL------------------------------------ 231 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s~l------------------------------------ 231 (419)
+.++++..+.|.||+|+|||||+++|++... .+-+.+++.++
T Consensus 1054 l~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~ 1133 (1284)
T 3g5u_A 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS 1133 (1284)
T ss_dssp EEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCC
Confidence 4567888899999999999999999997432 22333332111
Q ss_pred --------------------hhhh-------hc----hhHHHHHHH--HHHHHhhCCceEEecccccccccccCCCCCCC
Q 014743 232 --------------------VQKY-------IG----EGSRMVREL--FVMAREHAPSIIFMDEIDSIGSARMESGSGNG 278 (419)
Q Consensus 232 --------------------~~~~-------~g----~~~~~i~~l--f~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~ 278 (419)
.... +| ...++-++. +.+|....|.||++|| ++++.
T Consensus 1134 ~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDE-----------pTs~l 1202 (1284)
T 3g5u_A 1134 RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE-----------ATSAL 1202 (1284)
T ss_dssp CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEES-----------CSSSC
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeC-----------CcccC
Confidence 0000 11 112233333 3444457899999999 77789
Q ss_pred CHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 279 ~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
|......+.+.+.... .+..||+.||+.+.+.
T Consensus 1203 D~~~~~~i~~~l~~~~-----~~~tvi~isH~l~~i~ 1234 (1284)
T 3g5u_A 1203 DTESEKVVQEALDKAR-----EGRTCIVIAHRLSTIQ 1234 (1284)
T ss_dssp CHHHHHHHHHHHHHHS-----SSSCEEEECSCTTGGG
T ss_pred CHHHHHHHHHHHHHhC-----CCCEEEEEecCHHHHH
Confidence 9999888888887652 3567888999988753
No 208
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.87 E-value=5.9e-05 Score=75.66 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=37.9
Q ss_pred HHhhCC--ceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 250 AREHAP--SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 250 a~~~~p--sVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
+....| .||+||| ++++.|+.....+.++|..+. .+..||++||+++.+
T Consensus 309 ~l~~~~~~~~LlLDE-----------pt~~LD~~~~~~l~~~L~~l~-----~~~~vi~itH~~~~~ 359 (415)
T 4aby_A 309 STVLGADTPSVVFDE-----------VDAGIGGAAAIAVAEQLSRLA-----DTRQVLVVTHLAQIA 359 (415)
T ss_dssp HHHHCCSSSEEEESS-----------TTTTCCHHHHHHHHHHHHHHT-----TTSEEEEECSCHHHH
T ss_pred HHHhCCCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHh-----CCCEEEEEeCcHHHH
Confidence 344678 9999999 455789999999999998873 256788899987543
No 209
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=8.1e-06 Score=73.67 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=29.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
.+.++..++|.|||||||||+++.||..++..++..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 445677899999999999999999999998887644
No 210
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.83 E-value=4.1e-05 Score=78.24 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc----CCceEEEeC
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSG 228 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~ 228 (419)
|+.++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 78888899999999999999999998743 445655553
No 211
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.83 E-value=0.00012 Score=74.39 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCH---HHHHHHHHHHHHcccc-----ccCCCeEEEEEe----
Q 014743 241 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDS---EVQRTMLELLNQLDGF-----EASNKIKVLMAT---- 308 (419)
Q Consensus 241 ~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~---~~~~~l~~lL~~l~~~-----~~~~~v~VI~tT---- 308 (419)
...+..++.|..+ .|+|+||||+++....+ .+.|. .+++.|+++++.-... -..+++++|+|.
T Consensus 239 ~~~~~ai~~ae~~--~il~~DEidki~~~~~~---~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~ 313 (444)
T 1g41_A 239 ELKQKAIDAVEQN--GIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 313 (444)
T ss_dssp HHHHHHHHHHHHH--CEEEEETGGGGSCCSSC---SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred HHHHHHHHHhccC--CeeeHHHHHHHhhccCC---CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc
Confidence 3445555555333 49999999999865421 22332 2567788887642100 134578899887
Q ss_pred CCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHH--------HHhhcccC------CCCCHHHHHH-------HcCCC
Q 014743 309 NRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKI--------HSRRMNLM------RGIDLKKIAE-------KMNGA 367 (419)
Q Consensus 309 n~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~--------~~~~~~~~------~~~dl~~la~-------~t~G~ 367 (419)
+.+.++.|.|+. ||+.+|.|+.++.++..+|+.. +...+... .+--+..|+. .|...
T Consensus 314 ~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~ 391 (444)
T 1g41_A 314 ARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENI 391 (444)
T ss_dssp CCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCC
T ss_pred CChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccC
Confidence 245556688988 9999999999999999999941 11111110 1112445555 34666
Q ss_pred CHHHHHHHHHHHHHHHHHh------cCCCCCHHHHHHHHHHHH
Q 014743 368 SGAELKAVCTEAGMFALRE------RRIHVTQEDFEMAVAKVM 404 (419)
Q Consensus 368 sgadi~~l~~~A~~~a~~~------~~~~vt~eD~~~Al~~v~ 404 (419)
.++-|+.++......+..+ ....||.+++...+..+.
T Consensus 392 GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 392 GARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp GGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTT
T ss_pred CchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccc
Confidence 6677666665554443332 234688888887765443
No 212
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.82 E-value=5.1e-05 Score=71.24 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
...|..++|.|||||||||+++.|+..++.+++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3556789999999999999999999998877777887765
No 213
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.81 E-value=6.7e-05 Score=69.15 Aligned_cols=111 Identities=22% Similarity=0.288 Sum_probs=63.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhc----cCCceEEEeCcc----hhhh----------h-----------------
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHH----TDCTFIRVSGSE----LVQK----------Y----------------- 235 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~----~~~~~i~v~~s~----l~~~----------~----------------- 235 (419)
|++++.-++++|+||+|||+++-.+|.. .+.+++.++... +... +
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence 6788889999999999999999887643 244555554321 1000 0
Q ss_pred -------h----chhHHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEE
Q 014743 236 -------I----GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKV 304 (419)
Q Consensus 236 -------~----g~~~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~V 304 (419)
. ......+..+...+....+.++++|.+..+..... ......+.+..+.... ...++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~------~~~~~~~~~~~L~~~a----~~~~i~v 175 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE------EERKIREVLLKLNTIL----LEMGVTT 175 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS------SGGGHHHHHHHHHHHH----HHHCCEE
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhcc------ChHHHHHHHHHHHHHH----HHcCCCe
Confidence 0 00112334555566778899999999988754321 1122223332222222 2346777
Q ss_pred EEEeCCc
Q 014743 305 LMATNRI 311 (419)
Q Consensus 305 I~tTn~~ 311 (419)
++++...
T Consensus 176 i~~~q~~ 182 (251)
T 2zts_A 176 ILTTEAP 182 (251)
T ss_dssp EEEECCC
T ss_pred EEEEEEe
Confidence 7777643
No 214
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.81 E-value=1.8e-05 Score=71.05 Aligned_cols=114 Identities=18% Similarity=0.118 Sum_probs=59.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCc--------chhhhhhch-----hHHHHHHHHHHHHhhCCceE
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS--------ELVQKYIGE-----GSRMVRELFVMAREHAPSII 258 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s--------~l~~~~~g~-----~~~~i~~lf~~a~~~~psVl 258 (419)
+.-++++||+|+||||++..++..+ +...+.+... .+.+ ..|. ......++++.+. ..+.+|
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s-~~g~~~~~~~~~~~~~~~~~~~-~~~dvv 80 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVS-HSGNGVEAHVIERPEEMRKYIE-EDTRGV 80 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC-----CEECEEESSGGGGGGGCC-TTEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEe-cCCCceeeEEECCHHHHHHHhc-CCCCEE
Confidence 4567899999999999986666532 3333332211 0000 0010 0001122332222 346799
Q ss_pred EecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCC------cchhhHHhcCCCceeEEEEcCC
Q 014743 259 FMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNR------IDILDQALLRPGRIDRKIEFPN 332 (419)
Q Consensus 259 ~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~------~~~ld~allr~gRfd~~I~~~~ 332 (419)
+|||+..+. ++....+..+.+ . ++.||++... +-...+.++. +.|.+..+..
T Consensus 81 iIDE~Q~~~------------~~~~~~l~~l~~-------~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~--~ad~v~~l~~ 138 (184)
T 2orw_A 81 FIDEVQFFN------------PSLFEVVKDLLD-------R-GIDVFCAGLDLTHKQNPFETTALLLS--LADTVIKKKA 138 (184)
T ss_dssp EECCGGGSC------------TTHHHHHHHHHH-------T-TCEEEEEEESBCTTSCBCHHHHHHHH--HCSEEEECCB
T ss_pred EEECcccCC------------HHHHHHHHHHHH-------C-CCCEEEEeeccccccCCccchHHHHH--HhhheEEeee
Confidence 999998741 223333333332 1 4456655543 3366677776 7777766653
No 215
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.81 E-value=0.00013 Score=76.37 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=57.4
Q ss_pred ceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc--hhhHHhcCCCceeEEEEcCCC
Q 014743 256 SIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID--ILDQALLRPGRIDRKIEFPNP 333 (419)
Q Consensus 256 sVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~--~ld~allr~gRfd~~I~~~~P 333 (419)
-+|+|||+..++... ..++...+.++.... ..-++.+|++|.+|+ .++..++. -|...|.|...
T Consensus 345 ivvVIDE~~~L~~~~--------~~~~~~~L~~Iar~G----Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIV--------GKKVEELIARIAQKA----RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEESCCTTHHHHT--------CHHHHHHHHHHHHHC----TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred EEEEEeCHHHHhhhh--------hHHHHHHHHHHHHHH----hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 589999999876421 235566667777665 345899999999998 78888876 68888999999
Q ss_pred CHHHHHHHHH
Q 014743 334 NEESRLDILK 343 (419)
Q Consensus 334 ~~~~r~~Il~ 343 (419)
+..+...||.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9988888874
No 216
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.80 E-value=5.2e-05 Score=69.96 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
++++.-+.|.||+|+|||||+++|++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46677899999999999999999998653
No 217
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.78 E-value=5.7e-05 Score=72.51 Aligned_cols=39 Identities=33% Similarity=0.534 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
..|..++|.|||||||||+++.|+..++..++.|++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 456779999999999999999999988666778877544
No 218
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.78 E-value=0.00027 Score=73.77 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=92.2
Q ss_pred cCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHh----ccCCc---eEEEeCcch-----
Q 014743 164 GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH----HTDCT---FIRVSGSEL----- 231 (419)
Q Consensus 164 ~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~----~~~~~---~i~v~~s~l----- 231 (419)
.|.+..+++|.+.+... +-...+.+.++|+.|+|||+||+.+++ ..... .+.++.+..
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999988431 112356788999999999999999996 23222 223333321
Q ss_pred ---hhh---hhchh-------------HHHHHHHHHHHHhh-CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHH
Q 014743 232 ---VQK---YIGEG-------------SRMVRELFVMAREH-APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLN 291 (419)
Q Consensus 232 ---~~~---~~g~~-------------~~~i~~lf~~a~~~-~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~ 291 (419)
... .++.. ...+...+...... .+.+|+||+++.. ... . +.
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-------------~~~-----~-~~ 261 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-------------ETI-----R-WA 261 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-------------HHH-----H-HH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-------------hhh-----c-cc
Confidence 000 01110 11122233333334 3789999998662 011 1 11
Q ss_pred HccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcCCCCHHHHHHHHHHHHhhcccCCCC--CHHHHHHHcCCC
Q 014743 292 QLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI--DLKKIAEKMNGA 367 (419)
Q Consensus 292 ~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~~P~~~~r~~Il~~~~~~~~~~~~~--dl~~la~~t~G~ 367 (419)
. ..+..||+||....... . . +..+..+.+++.+.++-.++|..+.......... ....|++.+.|.
T Consensus 262 ~------~~gs~ilvTTR~~~v~~-~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 262 Q------ELRLRCLVTTRDVEISN-A-A--SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp H------HTTCEEEEEESBGGGGG-G-C--CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred c------cCCCEEEEEcCCHHHHH-H-c--CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 1 14567888888654322 1 1 1234678999999999888888763211110000 134566667664
No 219
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.77 E-value=3.9e-05 Score=84.97 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=38.6
Q ss_pred HHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 246 LFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 246 lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
.+..|....|.||++|| |+++.|......+.++|.++ +..||++||+.+.+
T Consensus 911 aLArAL~~~P~LLLLDE-----------PT~gLD~~s~~~L~~~L~~~-------g~tVIiISHD~e~v 961 (986)
T 2iw3_A 911 VLAAGTWQRPHLIVLDE-----------PTNYLDRDSLGALSKALKEF-------EGGVIIITHSAEFT 961 (986)
T ss_dssp HHHHHHTTCCSEEEEEC-----------GGGTCCHHHHHHHHHHHHSC-------SSEEEEECSCHHHH
T ss_pred HHHHHHHhCCCEEEEEC-----------CccCCCHHHHHHHHHHHHHh-------CCEEEEEECCHHHH
Confidence 34455667899999999 67789988888788777654 23688999986654
No 220
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.77 E-value=0.00014 Score=81.45 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=60.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHh-----ccCCc--------------eEEEeCcchhhhhhchhHHHHHH-HHHHHHhhC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAH-----HTDCT--------------FIRVSGSELVQKYIGEGSRMVRE-LFVMAREHA 254 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~-----~~~~~--------------~i~v~~s~l~~~~~g~~~~~i~~-lf~~a~~~~ 254 (419)
+..++|.||+|+||||++|.++- +.++. +.++...+............+.+ ....+....
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~ 868 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATA 868 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCC
Confidence 46789999999999999999942 12211 11111111111111111111222 222334567
Q ss_pred CceEEecccccccccccCCCCCCCCHHH-HHHHHHHHHHccccccCCCeEEEEEeCCcchhhHH
Q 014743 255 PSIIFMDEIDSIGSARMESGSGNGDSEV-QRTMLELLNQLDGFEASNKIKVLMATNRIDILDQA 317 (419)
Q Consensus 255 psVl~iDEiD~l~~~r~~~~~~~~~~~~-~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~a 317 (419)
|++|+|||+- .+.++.. ...++.++..+. ...+..+|++||..+.....
T Consensus 869 ~sLlLLDEp~-----------~Gtd~~dg~~~~~~il~~L~---~~~g~~vl~~TH~~el~~~~ 918 (1022)
T 2o8b_B 869 HSLVLVDELG-----------RGTATFDGTAIANAVVKELA---ETIKCRTLFSTHYHSLVEDY 918 (1022)
T ss_dssp TCEEEEECTT-----------TTSCHHHHHHHHHHHHHHHH---HTSCCEEEEECCCHHHHHHT
T ss_pred CcEEEEECCC-----------CCCChHHHHHHHHHHHHHHH---hcCCCEEEEEeCCHHHHHHh
Confidence 9999999943 3455443 455667777663 22367899999998876543
No 221
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.73 E-value=1.5e-05 Score=70.79 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=30.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEE
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 225 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~ 225 (419)
|+..|..++|.|+|||||||+++.|+..++..++.
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34567789999999999999999999998877655
No 222
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.72 E-value=4.9e-05 Score=88.40 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=85.9
Q ss_pred ChhHHhhcCC---CCCCeEEEEcCCCChHHHHHHHHHhc---cCCceEEEeCc----------------chhhhhhchhH
Q 014743 183 HPELFESLGI---AQPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGS----------------ELVQKYIGEGS 240 (419)
Q Consensus 183 ~~~~~~~~gi---~~p~~iLL~GPpGtGKT~LakalA~~---~~~~~i~v~~s----------------~l~~~~~g~~~ 240 (419)
.+.+-..+|+ +.++.+++|||+||||||||-.++.+ .+.....++.. ++.-.++...+
T Consensus 1416 ~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e 1495 (1706)
T 3cmw_A 1416 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 1495 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHH
T ss_pred CHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHH
Confidence 3455555654 44556999999999999998777643 35555566553 22222555667
Q ss_pred HHHHHHHHHHHhhCCceEEecccccccccccCCCC-CCCCH-HHHHHHHHHHHHccccccCCCeEEEEEeCC
Q 014743 241 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS-GNGDS-EVQRTMLELLNQLDGFEASNKIKVLMATNR 310 (419)
Q Consensus 241 ~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~-~~~~~-~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~ 310 (419)
..+.-+...++..+|++|++|-+.++.++..-.+. +..+. --.+.|.|.|..+.+.-+..++++|++...
T Consensus 1496 ~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~ 1567 (1706)
T 3cmw_A 1496 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1567 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECB
T ss_pred HHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeecc
Confidence 78888888899999999999999999886532211 01111 134667788888777667778888887554
No 223
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.72 E-value=7.3e-05 Score=77.80 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=70.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcch----hh----------------------hhhc--hh
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL----VQ----------------------KYIG--EG 239 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l----~~----------------------~~~g--~~ 239 (419)
|+.++..++|.||||+|||||++.++... +...+.+...+- .. .++. ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 67888899999999999999999999743 333445443221 00 0011 12
Q ss_pred HHHHHHHHHHHHhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 240 SRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 240 ~~~i~~lf~~a~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
....+.++..+....|.+|+||=+-.+-.. ....+....+.+++..+. ..++.||++|+..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~-------~~~~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG-------VSNNAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS-------SCHHHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh-------CChHHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 334566777777889999999954444221 011335666777777663 3467888888876
No 224
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.71 E-value=0.00022 Score=77.81 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhc-----cCCc--------------eEEEeCcchhhhhhchhHHHHHHHHHH-HHhh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHH-----TDCT--------------FIRVSGSELVQKYIGEGSRMVRELFVM-AREH 253 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~-----~~~~--------------~i~v~~s~l~~~~~g~~~~~i~~lf~~-a~~~ 253 (419)
++..++|.||+|+||||+.|.++.. .+.. +-++...+.+..........+.++... ....
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~ 685 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNAT 685 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhcc
Confidence 4456889999999999999999863 1211 011111111111011111111222211 1246
Q ss_pred CCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 254 APSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 254 ~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
.|++|++||.-+ +++.. +....+..++..+. ...+..+|++||..+...
T Consensus 686 ~psLlLLDEp~~--------Gtd~~--d~~~i~~~ll~~l~---~~~g~~vl~~TH~~el~~ 734 (800)
T 1wb9_A 686 EYSLVLMDEIGR--------GTSTY--DGLSLAWACAENLA---NKIKALTLFATHYFELTQ 734 (800)
T ss_dssp TTEEEEEESCCC--------CSSSS--HHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGG
T ss_pred CCCEEEEECCCC--------CCChh--HHHHHHHHHHHHHH---hccCCeEEEEeCCHHHHH
Confidence 799999999533 12222 22333456666552 223678999999987554
No 225
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.68 E-value=2e-05 Score=69.82 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
+..++|.|||||||||+++.||..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999998887654
No 226
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.68 E-value=0.00014 Score=70.61 Aligned_cols=37 Identities=30% Similarity=0.258 Sum_probs=29.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEe
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVS 227 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~ 227 (419)
|+.++.-+++.|+||+|||+++..+|... +.+++.++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 68888899999999999999999998643 34455554
No 227
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.67 E-value=0.0001 Score=76.43 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=52.6
Q ss_pred eEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcc--hhhHHhcCCCceeEEEEcCCCC
Q 014743 257 IIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRID--ILDQALLRPGRIDRKIEFPNPN 334 (419)
Q Consensus 257 Vl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~--~ld~allr~gRfd~~I~~~~P~ 334 (419)
+|+|||...++... ...+...+..+.... ..-++.+|++|++++ .++..++. -|...|.|...+
T Consensus 300 vlvIDE~~~ll~~~--------~~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s 365 (512)
T 2ius_A 300 VVLVDEFADLMMTV--------GKKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 365 (512)
T ss_dssp EEEEETHHHHHHHH--------HHHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSS
T ss_pred EEEEeCHHHHHhhh--------hHHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCC
Confidence 89999997765311 123344444444443 234788999999987 57777776 788889999999
Q ss_pred HHHHHHHHHH
Q 014743 335 EESRLDILKI 344 (419)
Q Consensus 335 ~~~r~~Il~~ 344 (419)
..+...|+..
T Consensus 366 ~~dsr~ilg~ 375 (512)
T 2ius_A 366 KIDSRTILDQ 375 (512)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHhcCC
Confidence 9999888753
No 228
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=0.00024 Score=62.79 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
|..|+|.|+|||||||+++.|+..++.++ ++..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~--i~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeE--EeHHHHH
Confidence 56789999999999999999999887655 4444444
No 229
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.63 E-value=0.0002 Score=66.29 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=42.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcc-------hhhhhhchh-----HHHHHHHHHHHHh----hCC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE-------LVQKYIGEG-----SRMVRELFVMARE----HAP 255 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~-------l~~~~~g~~-----~~~i~~lf~~a~~----~~p 255 (419)
+.-++++||+|+||||++..++..+ +..++.+.... +.++ .|.. -....++++.++. ..|
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 4457788999999999998888654 33444442211 1111 1210 0112356666655 358
Q ss_pred ceEEecccccc
Q 014743 256 SIIFMDEIDSI 266 (419)
Q Consensus 256 sVl~iDEiD~l 266 (419)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 99999998764
No 230
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.63 E-value=0.00014 Score=73.95 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc----CCceEEEeC
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSG 228 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~ 228 (419)
|+.++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 68888889999999999999999998643 445655544
No 231
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.61 E-value=0.00046 Score=64.96 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhc---cCCceEEEeCcchh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHH---TDCTFIRVSGSELV 232 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~---~~~~~i~v~~s~l~ 232 (419)
.+..|+|.|+|||||||+++.|+.. .+..++.++...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 3567899999999999999999987 67777766766554
No 232
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.59 E-value=0.00063 Score=65.92 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=45.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh-------hhh-------------hchhHHHHHHHHH
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV-------QKY-------------IGEGSRMVRELFV 248 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~-------~~~-------------~g~~~~~i~~lf~ 248 (419)
..+|..++|.||+|+||||++..||..+ +..+..+++..+. ..| .+.........+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3567789999999999999999999854 3344444433211 011 0111222234455
Q ss_pred HHHhhCCceEEeccc
Q 014743 249 MAREHAPSIIFMDEI 263 (419)
Q Consensus 249 ~a~~~~psVl~iDEi 263 (419)
.+....|.+|++|+.
T Consensus 181 ~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 181 HALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHTTCSEEEEEEC
T ss_pred HHHhcCCCEEEEECC
Confidence 667788999999984
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.55 E-value=3.7e-05 Score=68.41 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=27.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhc-cCCceEE
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHH-TDCTFIR 225 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~-~~~~~i~ 225 (419)
..+..++|+|+|||||||+++.|+.. ++.+++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 44667999999999999999999998 6655543
No 234
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.54 E-value=0.00055 Score=66.51 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=40.5
Q ss_pred HHHHHHHHHHh------hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchh
Q 014743 242 MVRELFVMARE------HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL 314 (419)
Q Consensus 242 ~i~~lf~~a~~------~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~l 314 (419)
..++.+..|+. .+|.|++||| ++++.|+.....+.+++..+. .+..||++|++++.+
T Consensus 223 Gq~q~v~ia~~l~~~~~~~~~~lllDE-----------p~~~LD~~~~~~l~~~l~~~~-----~~~~vi~~tH~~~~~ 285 (322)
T 1e69_A 223 GEKALVGLALLFALMEIKPSPFYVLDE-----------VDSPLDDYNAERFKRLLKENS-----KHTQFIVITHNKIVM 285 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSCCSEEEEES-----------CCSSCCHHHHHHHHHHHHHHT-----TTSEEEEECCCTTGG
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeC-----------CCCCCCHHHHHHHHHHHHHhc-----CCCeEEEEECCHHHH
Confidence 34455555553 3578999999 556788888888888888762 246688899986543
No 235
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.52 E-value=0.00021 Score=78.90 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhh--C---CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhh
Q 014743 241 RMVRELFVMAREH--A---PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILD 315 (419)
Q Consensus 241 ~~i~~lf~~a~~~--~---psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld 315 (419)
+.-++-...|+.. . |.|+++|| |+++.|......+.++|..+. ..+..||++||+.+.+
T Consensus 808 GGErQRV~LAraL~~~p~~p~LLILDE-----------PTsGLD~~~~~~L~~lL~~L~----~~G~TVIvI~HdL~~i- 871 (916)
T 3pih_A 808 GGEAQRIKLASELRKRDTGRTLYILDE-----------PTVGLHFEDVRKLVEVLHRLV----DRGNTVIVIEHNLDVI- 871 (916)
T ss_dssp HHHHHHHHHHHHHTSCCCSSEEEEEES-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHH-
T ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHH-
Confidence 3444445555543 2 57999999 788899999999999988773 2355688899987643
Q ss_pred HHhcCCCceeEEEEcC
Q 014743 316 QALLRPGRIDRKIEFP 331 (419)
Q Consensus 316 ~allr~gRfd~~I~~~ 331 (419)
. ..|+++.+.
T Consensus 872 ----~--~ADrIivLg 881 (916)
T 3pih_A 872 ----K--NADHIIDLG 881 (916)
T ss_dssp ----T--TCSEEEEEE
T ss_pred ----H--hCCEEEEec
Confidence 2 356777663
No 236
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.51 E-value=0.00043 Score=67.84 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=40.9
Q ss_pred hhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcC
Q 014743 252 EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331 (419)
Q Consensus 252 ~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~ 331 (419)
...|.++++|| |+++.|+.....+.++|..+. .. +..||++||..+. .. .+|+++.+.
T Consensus 270 ~~~p~~lllDE-----------p~~~LD~~~~~~l~~~l~~~~---~~-~~~vi~~sH~~~~-----~~--~~d~~~~l~ 327 (339)
T 3qkt_A 270 AGEISLLILDE-----------PTPYLDEERRRKLITIMERYL---KK-IPQVILVSHDEEL-----KD--AADHVIRIS 327 (339)
T ss_dssp TTTTCEEEEEC-----------CCTTCCHHHHHHHHHHHHHTG---GG-SSEEEEEESCGGG-----GG--GCSEEEEEE
T ss_pred cCCCCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH---hc-CCEEEEEEChHHH-----HH--hCCEEEEEE
Confidence 34789999999 677899999888988888763 22 3467888998542 22 345555553
No 237
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.50 E-value=4.6e-05 Score=67.24 Aligned_cols=34 Identities=35% Similarity=0.599 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
..+..++|+|||||||||+++.|+..++..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3456799999999999999999999988776543
No 238
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.50 E-value=0.00078 Score=62.36 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=24.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeC
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 228 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~ 228 (419)
..+++.|+|||||||++-.+|..+ +..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 358899999999999999998754 445444433
No 239
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.50 E-value=6.3e-05 Score=65.65 Aligned_cols=36 Identities=25% Similarity=0.585 Sum_probs=28.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
+..+.|.|||||||||+++.||..++..+ +++..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~--id~d~~~ 39 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF--YDSDQEI 39 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEE--EEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE--EeccHHH
Confidence 45689999999999999999999887654 4444443
No 240
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.49 E-value=0.00021 Score=77.52 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHh
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~ 217 (419)
+..++|.||+|+||||+.|.++.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 56688999999999999999986
No 241
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.49 E-value=0.00025 Score=70.43 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=37.9
Q ss_pred hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcch
Q 014743 253 HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDI 313 (419)
Q Consensus 253 ~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ 313 (419)
..|.++++|| |+++.|+.....+..++..+. ..+..||++||..+.
T Consensus 302 ~~p~~lllDE-----------pt~~LD~~~~~~~~~~l~~l~----~~g~tvi~itH~~~~ 347 (365)
T 3qf7_A 302 GRLDAFFIDE-----------GFSSLDTENKEKIASVLKELE----RLNKVIVFITHDREF 347 (365)
T ss_dssp TTCCEEEEES-----------CCTTSCHHHHHHHHHHHHGGG----GSSSEEEEEESCHHH
T ss_pred CCCCEEEEeC-----------CCccCCHHHHHHHHHHHHHHH----hCCCEEEEEecchHH
Confidence 4799999999 778899999999999998873 236778899998754
No 242
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.48 E-value=5.8e-05 Score=65.54 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEEe
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 227 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v~ 227 (419)
.|+|.|||||||||+++.|+..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5789999999999999999999987775543
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.47 E-value=0.00035 Score=67.33 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc----CCceEEEeCc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGS 229 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~s 229 (419)
++..++|.||+|+||||++..||..+ +..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 56789999999999999999999754 3345555543
No 244
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.42 E-value=6.1e-05 Score=66.59 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=27.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
..|+|.|+|||||||+++.|+..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3589999999999999999999998886643
No 245
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.42 E-value=7.6e-05 Score=67.08 Aligned_cols=34 Identities=35% Similarity=0.468 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
..|..|+|.|||||||||+++.|+..++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3456799999999999999999999988776543
No 246
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.39 E-value=7.4e-05 Score=68.65 Aligned_cols=39 Identities=21% Similarity=0.487 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
..+..|+|.|||||||||+++.||..++..++. ..+++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~~~~ 43 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS--SGDLLR 43 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE--HHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe--chHHHH
Confidence 456789999999999999999999988766554 344443
No 247
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.39 E-value=6.4e-05 Score=66.03 Aligned_cols=29 Identities=38% Similarity=0.635 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEE
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIR 225 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~ 225 (419)
.++|.|||||||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58899999999999999999999877654
No 248
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.38 E-value=8e-05 Score=68.02 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
++..|+|.|||||||||+++.||..++..++. ..+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~~~~ 40 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA--TGDMLR 40 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe--hhHHHH
Confidence 46779999999999999999999998866544 444443
No 249
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.38 E-value=8e-05 Score=66.18 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
..+..++|.|||||||||+++.||..++.+++. ..++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~--~d~~~~ 45 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS--TGDLLR 45 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc--HHHHHH
Confidence 356789999999999999999999998876554 344443
No 250
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.37 E-value=0.00013 Score=65.67 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
.++..+.|.||+||||||+++.|++.++ .+.+++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETG--LEFAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHC--CEEEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC--CeEEccccc
Confidence 4567899999999999999999999885 455666554
No 251
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.35 E-value=9.6e-05 Score=69.52 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEEeCc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s 229 (419)
.++|.|||||||||+++.||..++..++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999888776653
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.34 E-value=0.00011 Score=66.13 Aligned_cols=31 Identities=29% Similarity=0.610 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEE
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 225 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~ 225 (419)
+..++|.||||+||||+++.|+..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5679999999999999999999998766554
No 253
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.33 E-value=0.0005 Score=70.99 Aligned_cols=38 Identities=11% Similarity=-0.038 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc----CCceEEEeC
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSG 228 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~ 228 (419)
|+.++.-++|.|+||+|||+++-.+|... +.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 68888889999999999999999998643 445665554
No 254
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.33 E-value=0.00036 Score=77.00 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=42.2
Q ss_pred CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcC
Q 014743 255 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331 (419)
Q Consensus 255 psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~ 331 (419)
|.|++||| |+++.|......+.++|..+. ..+..||++||+.+.+ . ..|+++.+.
T Consensus 867 p~lLILDE-----------PTsGLD~~~~~~l~~lL~~L~----~~G~TVIvisHdl~~i-----~--~aDrIivL~ 921 (972)
T 2r6f_A 867 RTLYILDE-----------PTTGLHVDDIARLLDVLHRLV----DNGDTVLVIEHNLDVI-----K--TADYIIDLG 921 (972)
T ss_dssp CEEEEEEC-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHH-----T--TCSEEEEEC
T ss_pred CCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHHHH-----H--hCCEEEEEc
Confidence 58999999 788899999999999988773 2356788899987643 2 356777764
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.33 E-value=9.5e-05 Score=65.29 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
.+..++|.|||||||||+++.|+..++..+ ++..++.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~--i~~d~~~ 39 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKK--LSTGDIL 39 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEE--ECHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHH
Confidence 345689999999999999999999887554 4444443
No 256
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.33 E-value=0.0001 Score=64.17 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=27.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
..++|.|+|||||||+++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4689999999999999999999999887653
No 257
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.33 E-value=8.7e-05 Score=67.81 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
.+..|+|.|+|||||||+++.||..++..++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 346789999999999999999999998665543
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.33 E-value=8.5e-05 Score=65.61 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
+..++|.|||||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.33 E-value=0.00011 Score=64.32 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHh-ccCCceEEEeCc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGS 229 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~-~~~~~~i~v~~s 229 (419)
|..++|.|||||||||+++.|+. .++ +..++..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d 35 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRD 35 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHH
Confidence 45689999999999999999998 454 4444443
No 260
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.32 E-value=0.00011 Score=64.99 Aligned_cols=38 Identities=24% Similarity=0.499 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
.+..|+|.|+|||||||+++.|+..++..++ +..++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i--~~d~~~~ 42 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHL--SAGDLLR 42 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--eHHHHHH
Confidence 3567899999999999999999998876554 4444443
No 261
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.32 E-value=0.00039 Score=68.32 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=29.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEe
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVS 227 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~ 227 (419)
|+.++.-++|.|+||+|||+++..+|... +.++..++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 68888889999999999999999998753 44544443
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.31 E-value=9.3e-05 Score=63.95 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=24.7
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
.++|.|||||||||+++.| ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 7777776553
No 263
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.31 E-value=0.00014 Score=64.09 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcch
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL 231 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l 231 (419)
.++..+.|.|++||||||+++.|+..+ +.+++.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 356678899999999999999999987 788888875443
No 264
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.31 E-value=0.00022 Score=70.74 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=49.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCc-chh----hh---hhc-h-------hHHHHHHHHHHHH
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGS-ELV----QK---YIG-E-------GSRMVRELFVMAR 251 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s-~l~----~~---~~g-~-------~~~~i~~lf~~a~ 251 (419)
+.+.++..++|.||+|+|||||+++|++... ...+.+++. ++. .. ++. . ....++..+..+.
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l 249 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL 249 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHT
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHH
Confidence 3456788899999999999999999998763 456666542 211 00 111 0 1123556677777
Q ss_pred hhCCceEEeccc
Q 014743 252 EHAPSIIFMDEI 263 (419)
Q Consensus 252 ~~~psVl~iDEi 263 (419)
...|.+++++|+
T Consensus 250 ~~~pd~~l~~e~ 261 (361)
T 2gza_A 250 RMKPTRILLAEL 261 (361)
T ss_dssp TSCCSEEEESCC
T ss_pred hcCCCEEEEcCc
Confidence 788999999995
No 265
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.30 E-value=0.0014 Score=66.08 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
..|.-++|.|||||||||+++.|+..++.. .++...+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~--~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYV--HVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCE--ECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcE--EEccchH
Confidence 456778999999999999999999988654 4444443
No 266
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.30 E-value=0.00022 Score=78.00 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=42.2
Q ss_pred CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEcC
Q 014743 255 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP 331 (419)
Q Consensus 255 psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~~ 331 (419)
|.|++||| |+++.|......+.++|..+. ..+..||++||+.+.+ . ..|+++.+.
T Consensus 752 p~lLILDE-----------PTsGLD~~~~~~l~~lL~~L~----~~G~tVIvisHdl~~i-----~--~aDrii~L~ 806 (842)
T 2vf7_A 752 GTVYVLDE-----------PTTGLHPADVERLQRQLVKLV----DAGNTVIAVEHKMQVV-----A--ASDWVLDIG 806 (842)
T ss_dssp CEEEEEEC-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHH-----T--TCSEEEEEC
T ss_pred CCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHHHH-----H--hCCEEEEEC
Confidence 68999999 788899999999999988773 2356788899987654 2 346666663
No 267
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.30 E-value=0.00012 Score=75.96 Aligned_cols=71 Identities=20% Similarity=0.381 Sum_probs=48.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcc-hhh---hh--------hchhHHHHHHHHHHHHhhCCceE
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE-LVQ---KY--------IGEGSRMVRELFVMAREHAPSII 258 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~-l~~---~~--------~g~~~~~i~~lf~~a~~~~psVl 258 (419)
..+..+++.||+|+||||+++++++.+ +...+.+.... +.- .+ ++.....+..++..+.+..|.++
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~i 337 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYI 337 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeE
Confidence 456779999999999999999999876 34566665543 211 00 11111234456666777899999
Q ss_pred Eeccc
Q 014743 259 FMDEI 263 (419)
Q Consensus 259 ~iDEi 263 (419)
+++|+
T Consensus 338 ivgEi 342 (511)
T 2oap_1 338 IVGEV 342 (511)
T ss_dssp EESCC
T ss_pred EeCCc
Confidence 99996
No 268
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.29 E-value=0.00059 Score=75.49 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=40.9
Q ss_pred CceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCCceeEEEEc
Q 014743 255 PSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEF 330 (419)
Q Consensus 255 psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~I~~ 330 (419)
|.|++||| |+++.|......+.++|..+. ..+..||++||+.+.+ . ..|+++.+
T Consensus 885 p~lLILDE-----------PTsGLD~~~~~~l~~lL~~L~----~~G~TVIvisHdl~~i-----~--~aDrIivL 938 (993)
T 2ygr_A 885 RTVYILDE-----------PTTGLHFDDIRKLLNVINGLV----DKGNTVIVIEHNLDVI-----K--TSDWIIDL 938 (993)
T ss_dssp SEEEEEES-----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHHHH-----T--TCSEEEEE
T ss_pred CCEEEEEC-----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHHHH-----H--hCCEEEEE
Confidence 58999999 788899999999999988773 2356788899987654 2 24555555
No 269
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.29 E-value=0.00011 Score=65.51 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~ 234 (419)
.+..|+|.|||||||||+++.|+..++..+ ++..++...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~--i~~d~~~~~ 49 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTH--LSTGELLRE 49 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEE--EEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeE--EcHHHHHHH
Confidence 456799999999999999999999987554 444455433
No 270
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.29 E-value=0.00011 Score=64.55 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceE
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 224 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i 224 (419)
.|..++|.|+|||||||+++.|+..++.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3567899999999999999999999988876
No 271
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.28 E-value=0.00016 Score=65.07 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcch
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL 231 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l 231 (419)
.++..+.|.||+||||||++++|+..+ +...+.+++..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 567788999999999999999999977 433346665544
No 272
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.27 E-value=0.00016 Score=63.32 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
++..++|.||||+||||+++.|+..++. +.+++.++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~--~~i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHA--AFLDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTC--EEEEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCc--EEEeCccc
Confidence 3557889999999999999999998754 45555544
No 273
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.26 E-value=0.00013 Score=68.18 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
.+|..|+|.|||||||||+++.|+..++..++ +.+++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r 65 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLR 65 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHH
Confidence 46788999999999999999999998865544 4444443
No 274
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.25 E-value=0.0019 Score=71.95 Aligned_cols=43 Identities=26% Similarity=0.216 Sum_probs=35.8
Q ss_pred ccCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHh
Q 014743 163 IGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 163 I~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~ 217 (419)
.+|.+..+++|.+.+... ...+-+.++||.|+|||+||+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 389999999999987531 2356788999999999999999985
No 275
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.25 E-value=0.00043 Score=73.39 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHhcc
Q 014743 198 VLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 198 iLL~GPpGtGKT~LakalA~~~ 219 (419)
+.|.||+|+|||||+++|++..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8899999999999999999864
No 276
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.25 E-value=0.00012 Score=63.77 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=26.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEE
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIR 225 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~ 225 (419)
..|+|.|+|||||||+++.|+..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999998876554
No 277
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.24 E-value=0.00015 Score=65.82 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
.|+|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999887765543
No 278
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.24 E-value=0.00015 Score=65.17 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
.+..|+|.|||||||||+++.|+..++..++. ..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~--~d~~~~ 51 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS--AGDLLR 51 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEE--HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe--HHHHHH
Confidence 44568999999999999999999988765544 444443
No 279
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.24 E-value=0.0012 Score=59.82 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=66.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHhcc---CCceEEE---eCc------chhhhhh-------------c----hhHHHHHHH
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHT---DCTFIRV---SGS------ELVQKYI-------------G----EGSRMVREL 246 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v---~~s------~l~~~~~-------------g----~~~~~i~~l 246 (419)
..+++|+++|.||||+|-.+|-.. +..+..+ .+. .++..+. . ......+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 458899999999999999998643 4444444 221 2333320 0 012334455
Q ss_pred HHHHHh----hCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCcchhhHHhcCCC
Q 014743 247 FVMARE----HAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPG 322 (419)
Q Consensus 247 f~~a~~----~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~~~ld~allr~g 322 (419)
+..++. ..+++|+|||+-....-+ ..+ ...+.++|.. ...++-||+|+|.+ +++|+.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g------~l~---~~ev~~~l~~-----Rp~~~~vIlTGr~a---p~~l~e-- 169 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYD------YLP---LEEVISALNA-----RPGHQTVIITGRGC---HRDILD-- 169 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTT------SSC---HHHHHHHHHT-----SCTTCEEEEECSSC---CHHHHH--
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCC------CCC---HHHHHHHHHh-----CcCCCEEEEECCCC---cHHHHH--
Confidence 555554 458999999985532211 111 1234455542 34567899999874 455554
Q ss_pred ceeEEEEc
Q 014743 323 RIDRKIEF 330 (419)
Q Consensus 323 Rfd~~I~~ 330 (419)
.-|.+-++
T Consensus 170 ~AD~VTem 177 (196)
T 1g5t_A 170 LADTVSEL 177 (196)
T ss_dssp HCSEEEEC
T ss_pred hCcceeee
Confidence 44554444
No 280
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.24 E-value=0.00015 Score=66.96 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
.+..|+|.|+|||||||+++.||..++..++. ..+++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 52 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA--TGDMLR 52 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec--HHHHHH
Confidence 45679999999999999999999999866554 344443
No 281
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.24 E-value=0.00018 Score=66.38 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~ 234 (419)
+..++.|+|.||||+||+|.|+.||..++.+ .++..+++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR~ 66 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLRA 66 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHHH
Confidence 3567788999999999999999999988654 5565665544
No 282
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.23 E-value=0.0017 Score=66.71 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=45.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhh--------hh-----hc--------hhHHHHHHHH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ--------KY-----IG--------EGSRMVRELF 247 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~--------~~-----~g--------~~~~~i~~lf 247 (419)
.+..+..++|.||+|+|||||++.||+.+ ...-+.+.+.+... .| ++ .....+.+.+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l 368 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 368 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHH
Confidence 34567779999999999999999999865 23344454332211 11 11 1123344555
Q ss_pred HHHHhhCCceEEecccc
Q 014743 248 VMAREHAPSIIFMDEID 264 (419)
Q Consensus 248 ~~a~~~~psVl~iDEiD 264 (419)
..++.....+|++|=.-
T Consensus 369 ~~a~~~~~DvVLIDTaG 385 (503)
T 2yhs_A 369 QAAKARNIDVLIADTAG 385 (503)
T ss_dssp HHHHHTTCSEEEECCCC
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 55666667888887643
No 283
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.22 E-value=0.00082 Score=68.46 Aligned_cols=38 Identities=29% Similarity=0.213 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeC
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 228 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~ 228 (419)
|+.++.-+++.|+||+|||+++-.+|... +.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 68888889999999999999999988643 445555543
No 284
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.22 E-value=0.00016 Score=62.65 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEE
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIR 225 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~ 225 (419)
.|+|.|+|||||||+++.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 57899999999999999999998877654
No 285
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.20 E-value=0.00016 Score=65.54 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
.|+|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999887765543
No 286
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.20 E-value=9.8e-05 Score=67.50 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
.+..|+|.|||||||||+++.||..++..+ ++.++++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~~ 40 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDLL 40 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHHH
Confidence 456799999999999999999999987644 4444443
No 287
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.20 E-value=0.0031 Score=60.63 Aligned_cols=90 Identities=21% Similarity=0.181 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh-------hhh---h---------c-hhHHHHHHHHHHH
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV-------QKY---I---------G-EGSRMVRELFVMA 250 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~-------~~~---~---------g-~~~~~i~~lf~~a 250 (419)
++..+.+.||+|+||||++..+|..+ +..+..+++.-.. ..+ . + ......+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 56678889999999999999999754 3444444432110 000 0 0 1112235566666
Q ss_pred HhhCCceEEecccccccccccCCCCCCCCHHHHHHHHHHHHHc
Q 014743 251 REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL 293 (419)
Q Consensus 251 ~~~~psVl~iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l 293 (419)
....|.+|+||+-- ..+.+....+.+..+...+
T Consensus 177 ~~~~~D~viiDtpp----------~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 177 RLEARDLILVDTAG----------RLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHTCCEEEEECCC----------CSSCCHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEeCCC----------CccccHHHHHHHHHHhhhc
Confidence 66788999999931 2334555555555555444
No 288
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.20 E-value=0.00012 Score=72.33 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=36.2
Q ss_pred cCcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEE
Q 014743 164 GGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 225 (419)
Q Consensus 164 ~G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~ 225 (419)
++++..++.+.+.+...+.. .....++|+||||+||||++++||..++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 34555666666655432111 122358999999999999999999988776644
No 289
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.19 E-value=0.00064 Score=61.62 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccC----CceEEEeCcch
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTD----CTFIRVSGSEL 231 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~----~~~i~v~~s~l 231 (419)
+.++..++|.|++|+||||+++.|+..++ .+++.+++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 35667789999999999999999998764 44777775544
No 290
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.18 E-value=0.00031 Score=62.76 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc-CCceEEEe
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT-DCTFIRVS 227 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~-~~~~i~v~ 227 (419)
.+..|.|.||+||||||+++.|+..+ +.+++.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 46779999999999999999999988 56666654
No 291
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.13 E-value=0.00026 Score=63.38 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
+.++..+.|.||+||||||+++.|+..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567789999999999999999999876
No 292
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.11 E-value=0.00031 Score=63.63 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
.++..+.|.||+|+|||||++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567788999999999999999998764
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.10 E-value=0.00024 Score=62.66 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHhccC---CceEEEeCcc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSE 230 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~---~~~i~v~~s~ 230 (419)
.|+|.|||||||||+++.|+..++ ..+..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 478999999999999999999775 2355554333
No 294
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.10 E-value=0.00031 Score=65.33 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceE
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 224 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i 224 (419)
.|..+.|.||||+||||+++.|+..++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4678999999999999999999988765543
No 295
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.10 E-value=0.00035 Score=73.49 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS 229 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s 229 (419)
...+++.||||||||+++++++..+ +..++.+..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 3578999999999999999998754 4455544443
No 296
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.09 E-value=0.00034 Score=63.73 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceE
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFI 224 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i 224 (419)
+..+.|.||+||||||+++.|++.++.+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 456899999999999999999998876554
No 297
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.09 E-value=0.0003 Score=62.98 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=27.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeC
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~ 228 (419)
+.++.-+.|.||+|+||||+++.|++... .+.+.+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~ 38 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA--EIKISI 38 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECC
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEec
Confidence 34667789999999999999999998753 344444
No 298
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.08 E-value=0.0019 Score=63.11 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=43.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcchhh-----------hhhc----------hhHHHHHHHHHH
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQ-----------KYIG----------EGSRMVRELFVM 249 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l~~-----------~~~g----------~~~~~i~~lf~~ 249 (419)
.+|..+.|.||+|+||||+++.||..+ ...-+.+.+.++.. ..+| .....+.+.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 567789999999999999999999864 22223333333210 1111 122334455555
Q ss_pred HHhhCCceEEeccc
Q 014743 250 AREHAPSIIFMDEI 263 (419)
Q Consensus 250 a~~~~psVl~iDEi 263 (419)
++...+.++++|-.
T Consensus 207 ~~~~~~d~vliDta 220 (328)
T 3e70_C 207 AKARGIDVVLIDTA 220 (328)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhccchhhHHhhc
Confidence 66667788888864
No 299
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.08 E-value=0.00029 Score=68.78 Aligned_cols=35 Identities=40% Similarity=0.682 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s 229 (419)
+..++|.||+|||||++++.||..++..++.+|.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 35789999999999999999999998888887654
No 300
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.07 E-value=0.00032 Score=64.03 Aligned_cols=35 Identities=26% Similarity=0.563 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
.++|.||||+||+|.|+.||..++.+ .++..+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~--~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV--HISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE--EEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe--EEcHHHHHH
Confidence 47899999999999999999998665 455556554
No 301
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.06 E-value=0.0011 Score=66.99 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=41.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCC--ceEEEeCcch--hh-----hhhch-hHHHHHHHHHHHHhhCCceEEeccc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDC--TFIRVSGSEL--VQ-----KYIGE-GSRMVRELFVMAREHAPSIIFMDEI 263 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~--~~i~v~~s~l--~~-----~~~g~-~~~~i~~lf~~a~~~~psVl~iDEi 263 (419)
++..+++.||+|+||||+++++++.+.. .-+.+....+ .- ..+.. ..-.....+..+....|.++++.|+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 4456889999999999999999986532 2233322221 10 00111 1111234445556678999999884
No 302
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.05 E-value=0.00027 Score=64.20 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
.|+|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999887666543
No 303
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.03 E-value=0.00036 Score=61.72 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
.+.-+.|.||+|+|||||++.|+....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999998653
No 304
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.03 E-value=0.00036 Score=60.98 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=26.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
++.+.++..+.|.||+|+|||||+|+|++.+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3456777789999999999999999999876
No 305
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00023 Score=66.99 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
+..+.|.||+||||||+++.||..++..++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 67899999999999999999999998776653
No 306
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.011 Score=59.25 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHH
Q 014743 165 GLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVR 244 (419)
Q Consensus 165 G~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~ 244 (419)
.++++.+.+...|...+ . .....|+-||.+|+|||+..- + + -.|-.+..++
T Consensus 121 ~Q~~Vf~~v~~lv~~~l------~----G~N~tifAYGqTGSGKTyTM~------g--------~-----~~Giipr~~~ 171 (403)
T 4etp_A 121 TNVDVFKEVGQLVQSSL------D----GYNVAIFAYGQTGSGKTFTML------N--------P-----GDGIIPSTIS 171 (403)
T ss_dssp CHHHHHHHHHHHHHHHH------T----TCCEEEEEESCTTSSHHHHHH------C--------T-----TTSHHHHHHH
T ss_pred chHHHHHHHHHHHHHHh------C----CcceEEEEECCCCCCCceEeC------C--------C-----CCccchhHHH
Confidence 45566655555443321 1 234567789999999999873 1 1 1266677788
Q ss_pred HHHHHHHh
Q 014743 245 ELFVMARE 252 (419)
Q Consensus 245 ~lf~~a~~ 252 (419)
.+|..+..
T Consensus 172 ~lF~~i~~ 179 (403)
T 4etp_A 172 HIFNWINK 179 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877654
No 307
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.01 E-value=0.00033 Score=62.84 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~ 234 (419)
.+.|.||+||||||+++.|++ ++.+++ +..++...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i--~~d~~~~~ 37 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVL--DADKLIHS 37 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEE--EHHHHHHG
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEE--EccHHHHH
Confidence 578999999999999999999 765544 44454433
No 308
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.00 E-value=0.00022 Score=64.23 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=25.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCT 222 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~ 222 (419)
..|..|+|.|+|||||||+++.|+..++..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 356779999999999999999999876543
No 309
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.99 E-value=0.00052 Score=60.57 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhcc---CCceEEEe
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVS 227 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~ 227 (419)
.+.|.|+|||||||+++.|+..+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999987 77777665
No 310
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.99 E-value=0.0017 Score=70.65 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=37.0
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCCh--hHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHh
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHP--ELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i~~~l~~~--~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~ 217 (419)
|...|++.+-.....+.+.+.-..|.... .+... +..+..+++.||+|+|||+++..++.
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHH
Confidence 44567777655555555555444443321 11111 23456799999999999998877754
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.97 E-value=0.00042 Score=61.73 Aligned_cols=29 Identities=14% Similarity=0.488 Sum_probs=25.4
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEE
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIR 225 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~ 225 (419)
.+.|.|++||||||+++.|+..++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999998876553
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.97 E-value=0.00052 Score=61.69 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
.+.|.||+||||||+++.|++ ++.+++ +...+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 578999999999999999998 666554 544443
No 313
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.96 E-value=0.00038 Score=63.78 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=24.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
+.+.++..+.|.||+|+|||||++.|++..
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345677789999999999999999999876
No 314
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.96 E-value=0.00061 Score=61.78 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
+++.-+.|.||+|+||||+++.|+..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567789999999999999999998764
No 315
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.95 E-value=0.0017 Score=60.28 Aligned_cols=37 Identities=27% Similarity=0.273 Sum_probs=29.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEEeCc-chh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS-ELV 232 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s-~l~ 232 (419)
..++++||+|+|||.++-+++...+...+.+... .+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 3589999999999999999988876666666554 443
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.95 E-value=0.00044 Score=62.36 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=25.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
+.++.-++|.||||+||||+++.|+..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45678899999999999999999998774
No 317
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.94 E-value=0.0004 Score=62.61 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=25.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc-CCceE
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT-DCTFI 224 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~-~~~~i 224 (419)
.++..+.+.||||+||||+++.|++.+ +..++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 445668899999999999999999977 44433
No 318
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.92 E-value=0.00027 Score=63.68 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=24.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
..|..|+|.|+|||||||+++.|+..++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998764
No 319
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.91 E-value=0.0005 Score=67.44 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
.++-++|.||+|||||+|+..||..++..++..|.-.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 3456889999999999999999999988888776654
No 320
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.90 E-value=0.00047 Score=61.78 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDC 221 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~ 221 (419)
+..|+|.|||||||||+++.|+..++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 457899999999999999999998765
No 321
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.89 E-value=0.00054 Score=61.07 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~ 234 (419)
.+..+.|.|++||||||+++.|+.. +.++ ++..++...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~--id~d~~~~~ 44 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPV--LDLDALAAR 44 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCE--EEHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEE--EcccHHHHH
Confidence 3567889999999999999999998 5554 455555433
No 322
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.89 E-value=0.0017 Score=58.34 Aligned_cols=53 Identities=17% Similarity=0.076 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCc
Q 014743 167 DQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS 229 (419)
Q Consensus 167 ~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s 229 (419)
++.++.|.+.+..- ...++..+.|.||+|+||||+++.|+..+ +..++.++..
T Consensus 4 ~~~~~~l~~~~~~~----------~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 4 RDRIDFLCKTILAI----------KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp HHHHHHHHHHHHTS----------CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred HHHHHHHHHHHHHh----------ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 34556666665431 12456678899999999999999999865 4445555433
No 323
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.88 E-value=0.0053 Score=54.61 Aligned_cols=18 Identities=39% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCChHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~La 212 (419)
++.+++.+|+|+|||..+
T Consensus 38 ~~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAF 55 (207)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 467999999999999863
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.87 E-value=0.00052 Score=60.81 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=26.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
..++|.||||+||||+++.|+...+ ..+.+++.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~-g~~~i~~d~~ 37 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD-NSAYIEGDII 37 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS-SEEEEEHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC-CeEEEcccch
Confidence 3578999999999999999998543 3355665544
No 325
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.87 E-value=0.00085 Score=59.32 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccC---CceEEEeCcch
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSEL 231 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~---~~~i~v~~s~l 231 (419)
.++..++|.|+||+||||+++.|+..+. ..+..+++..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4566789999999999999999998763 33555554433
No 326
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.87 E-value=0.00067 Score=60.14 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHhcc---CCceEEEe
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVS 227 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~ 227 (419)
-|.|.||+||||||+++.|+..+ +.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 37899999999999999999988 77777554
No 327
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.87 E-value=0.00061 Score=62.46 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
.++|.|||||||||+++.|+..++..+ ++..+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE--EchHHHH
Confidence 478999999999999999999887544 4444444
No 328
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.86 E-value=0.00048 Score=62.07 Aligned_cols=27 Identities=37% Similarity=0.680 Sum_probs=22.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
++++.+.|.||+|+|||||++.|++..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356779999999999999999999865
No 329
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.86 E-value=0.00065 Score=63.24 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
.|..+.|.|||||||||+++.||..++..+ ++...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~--~d~g~~ 43 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARY--LDTGAM 43 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCc--ccCCcH
Confidence 356789999999999999999999987654 444444
No 330
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.83 E-value=0.00062 Score=65.98 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
.|.-+++.||+|||||+|+..||..++..++..|.-.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 3567889999999999999999999887777766543
No 331
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.83 E-value=0.00063 Score=61.52 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
+.++..+.|.||+|+|||||+++|++..
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5677889999999999999999999865
No 332
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.82 E-value=0.0012 Score=63.83 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=30.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcc
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE 230 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~ 230 (419)
+.+.+|..++|.||+|+||||+++.||..+ ...-+.+.+.+
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d 137 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 137 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 345677789999999999999999999864 23344454443
No 333
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.82 E-value=0.00055 Score=61.70 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
.++..+.|.||+||||||+++.|++.++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566788999999999999999999876
No 334
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.80 E-value=0.0028 Score=61.65 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=28.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeC
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 228 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~ 228 (419)
..++..+++.||+|+||||++..||..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4567789999999999999999999754 444454544
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.79 E-value=0.0009 Score=62.65 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=26.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceE
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 224 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i 224 (419)
++..+.|.||+||||||+++.||..++..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4567889999999999999999998876544
No 336
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.78 E-value=0.00075 Score=65.36 Aligned_cols=31 Identities=32% Similarity=0.630 Sum_probs=27.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
++.++++..+.|+||+|+|||||+++|++.+
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3467888899999999999999999999877
No 337
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.77 E-value=0.00072 Score=61.39 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
.+..+.|.|++||||||+++.|+. ++.++ ++...+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~--id~D~~~ 38 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINV--IDADIIA 38 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEE--EEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEE--EEccHHH
Confidence 356788999999999999999998 66544 4444443
No 338
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.76 E-value=0.001 Score=62.10 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCc--------eEEEeCcchhh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCT--------FIRVSGSELVQ 233 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~--------~i~v~~s~l~~ 233 (419)
.+..|.|.||+||||||+++.|+..++.+ +..+++.++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 45678899999999999999999988765 34667766654
No 339
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.75 E-value=0.001 Score=59.53 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCceEEE
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCTFIRV 226 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~~i~v 226 (419)
.+.|.|++||||||+++.||..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999998776643
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.74 E-value=0.00069 Score=60.16 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=21.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccC
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
.-+.|.||+|+||||+++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998653
No 341
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.72 E-value=0.0005 Score=63.18 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=20.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHH-hcc
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVA-HHT 219 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA-~~~ 219 (419)
+.+.++.-+.|.||+||||||+++.|+ +..
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445677889999999999999999999 764
No 342
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.71 E-value=0.0033 Score=60.70 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE 230 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~ 230 (419)
+|..+.|.||+||||||+++.||..+ ...-+.+.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 46778999999999999999999854 22334444433
No 343
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.68 E-value=0.00081 Score=62.49 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=25.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhccCC
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDC 221 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~~~ 221 (419)
.+.++.-+.|.||+|+||||+++.|++.++.
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 3456667889999999999999999997653
No 344
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.67 E-value=0.00095 Score=64.81 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=28.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEEeCc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s 229 (419)
.-+++.||+|||||+|+..||..++..++..|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4578899999999999999999988776666544
No 345
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.67 E-value=0.0016 Score=64.44 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=30.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcc
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSE 230 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~ 230 (419)
+.+.+|..++|.||+|+||||+++.||..+ ...-+.+.+.+
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D 194 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 194 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc
Confidence 345677889999999999999999999865 23344555444
No 346
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.67 E-value=0.00074 Score=60.87 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=29.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 235 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~ 235 (419)
..+.|.|++||||||+++.++..++.+++ ++.++....
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~~ 50 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHEV 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHHH
Confidence 34789999999999999999998776654 455554443
No 347
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.66 E-value=0.004 Score=60.93 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=23.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
+..+..+.|.||||+|||||+++|++.+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4566678899999999999999999754
No 348
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.64 E-value=0.011 Score=59.09 Aligned_cols=138 Identities=19% Similarity=0.288 Sum_probs=75.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHhcc-----CCceEEEeCc-------chhhhh--------hchh-HHHHH---HH
Q 014743 191 GIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGS-------ELVQKY--------IGEG-SRMVR---EL 246 (419)
Q Consensus 191 gi~~p~~iLL~GPpGtGKT~LakalA~~~-----~~~~i~v~~s-------~l~~~~--------~g~~-~~~i~---~l 246 (419)
-+..+..+++.||+|||||+|++.|++.. ++.++.+-+. ++.... ..+. ...++ ..
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~a 249 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMV 249 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35677889999999999999999998753 3334443222 111110 0111 11111 11
Q ss_pred HHHH----HhhCCceEEeccccccccc-------ccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc--ch
Q 014743 247 FVMA----REHAPSIIFMDEIDSIGSA-------RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI--DI 313 (419)
Q Consensus 247 f~~a----~~~~psVl~iDEiD~l~~~-------r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~--~~ 313 (419)
+..| ......+|++|++.+++.. .+..++.+.++.+...+..++..-..+...+.++.|.|.--+ +.
T Consensus 250 lt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ps~Gyp~~~~~~~~rl~erA~~~~~~GSIT~i~tvlv~tgdd 329 (422)
T 3ice_A 250 IEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSK 329 (422)
T ss_dssp HHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCSSSCBHHHHHHHHHHHTTCEEESSSCEEEEEEEECCSSSCH
T ss_pred HHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCCCCcCHHHHhhhHHHHHhccccCCCcceeEEEEEEecCCCc
Confidence 1111 2344567889999877632 223344556667666666666554333445677777776654 34
Q ss_pred hhH----HhcCCCceeEEEEc
Q 014743 314 LDQ----ALLRPGRIDRKIEF 330 (419)
Q Consensus 314 ld~----allr~gRfd~~I~~ 330 (419)
++. .+.. -.|-+|.+
T Consensus 330 ~~dpI~d~~~~--i~dg~ivL 348 (422)
T 3ice_A 330 MDEVIYEEFKG--TGNMELHL 348 (422)
T ss_dssp HHHHHHHHHHH--HCSEEEEB
T ss_pred ccchHHHHhcc--cCCceEEE
Confidence 432 2322 34556665
No 349
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.59 E-value=0.0014 Score=60.36 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=27.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCCceEE
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 225 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~ 225 (419)
..+..+.|.|++||||||+++.|+..++.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 455678999999999999999999988866543
No 350
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.58 E-value=0.01 Score=52.82 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHhc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~ 218 (419)
..+++.+|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999988877653
No 351
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.58 E-value=0.056 Score=48.51 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=32.3
Q ss_pred CCCCcccccCcHHHHHHHHHHh-hcccCCh-hHHhhcCCCCCCeEEEEcCCCChHHHHHHHHH
Q 014743 156 PDSTYDMIGGLDQQIKEIKEVI-ELPIKHP-ELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 216 (419)
Q Consensus 156 p~~~~~~I~G~~~~~~~l~~~i-~~~l~~~-~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA 216 (419)
...+|++++=.+...+.+.+.= ..|..++ +.+.. +-.++.+++.+|+|+|||..+-..+
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCchhhhhhHHH
Confidence 3356778765666666665521 1111111 11111 1124679999999999998665444
No 352
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.57 E-value=0.0018 Score=58.72 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
-.++-+.|.||+|+|||||+++|+....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3566789999999999999999998754
No 353
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.55 E-value=0.0043 Score=59.68 Aligned_cols=68 Identities=21% Similarity=0.146 Sum_probs=44.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchhh-------hh---------hc----hhHHHHHHHHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ-------KY---------IG----EGSRMVRELFVMAR 251 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~~-------~~---------~g----~~~~~i~~lf~~a~ 251 (419)
+..+++.||+|+||||++..+|..+ +..+..+++.-... .+ .+ .....+...++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6678899999999999999999755 44555555431100 00 01 12223356666676
Q ss_pred hhCCceEEecc
Q 014743 252 EHAPSIIFMDE 262 (419)
Q Consensus 252 ~~~psVl~iDE 262 (419)
+..+.+|+||=
T Consensus 178 ~~~~D~ViIDT 188 (297)
T 1j8m_F 178 SEKMEIIIVDT 188 (297)
T ss_dssp HTTCSEEEEEC
T ss_pred hCCCCEEEEeC
Confidence 67889999997
No 354
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.54 E-value=0.0012 Score=59.88 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEE
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 225 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~ 225 (419)
|..+.|.|++||||||+++.|+..++.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 4568999999999999999999998876544
No 355
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.53 E-value=0.011 Score=53.28 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=29.0
Q ss_pred CCcccccCcHHHHHHHHHHhh-cccCCh-hHHhhcCCCCCCeEEEEcCCCChHHHH
Q 014743 158 STYDMIGGLDQQIKEIKEVIE-LPIKHP-ELFESLGIAQPKGVLLYGPPGTGKTLL 211 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i~-~~l~~~-~~~~~~gi~~p~~iLL~GPpGtGKT~L 211 (419)
.+|++++-.+..++.+.+.=- .|..++ +.+.. +..++.+++.+|+|+|||..
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHH--HhcCCCEEEECCCCCcHHHH
Confidence 457777655555566654311 111111 11111 12346799999999999986
No 356
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.53 E-value=0.0011 Score=60.07 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCceEEEeC
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~ 228 (419)
.+.+++|.||||+|||+||..|+.... .++..|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 357899999999999999999998765 5554443
No 357
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.53 E-value=0.00079 Score=64.21 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcch
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 231 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l 231 (419)
|..++|.|||||||||+++.|+..+ ..+..++...+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~-~~~~~i~~D~~ 37 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN-PGFYNINRDDY 37 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS-TTEEEECHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC-CCcEEecccHH
Confidence 3568999999999999999999853 13344444443
No 358
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.53 E-value=0.0048 Score=55.68 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=41.2
Q ss_pred CCCeEEEEcCCCChHH-HHHHHHHhcc--CCceEEEeCc---ch----hhhhhch-----hHHHHHHHHHHHHhhCCceE
Q 014743 194 QPKGVLLYGPPGTGKT-LLARAVAHHT--DCTFIRVSGS---EL----VQKYIGE-----GSRMVRELFVMAREHAPSII 258 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT-~LakalA~~~--~~~~i~v~~s---~l----~~~~~g~-----~~~~i~~lf~~a~~~~psVl 258 (419)
.+.-.++|||.|+||| .|.+++.+.. +..++.+... .+ .+. .|. .-....++++. .....+|
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~-~g~~~~A~~~~~~~d~~~~--~~~~DvI 95 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQE--ALGVAVI 95 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHH-HHHHSEEEEESSGGGGHHH--HHTCSEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhc-cCCcccceecCCHHHHHHh--ccCCCEE
Confidence 3455778999999999 8999987743 4556666532 11 111 110 00111233332 2346899
Q ss_pred Eecccccc
Q 014743 259 FMDEIDSI 266 (419)
Q Consensus 259 ~iDEiD~l 266 (419)
+|||+--+
T Consensus 96 lIDEaQFf 103 (195)
T 1w4r_A 96 GIDEGQFF 103 (195)
T ss_dssp EESSGGGC
T ss_pred EEEchhhh
Confidence 99998775
No 359
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.52 E-value=0.0085 Score=60.59 Aligned_cols=70 Identities=23% Similarity=0.188 Sum_probs=44.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh-------hhh---h-------c--h-hHHHHHHHHHH
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV-------QKY---I-------G--E-GSRMVRELFVM 249 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~-------~~~---~-------g--~-~~~~i~~lf~~ 249 (419)
.+|..+++.||+|+||||++..||..+ +..+..+++.-.. ..+ . + . .....+..++.
T Consensus 96 ~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~ 175 (425)
T 2ffh_A 96 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (425)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHH
Confidence 356678899999999999999999755 3445555443111 000 0 0 1 12223566666
Q ss_pred HHhhCCceEEecc
Q 014743 250 AREHAPSIIFMDE 262 (419)
Q Consensus 250 a~~~~psVl~iDE 262 (419)
++...+.+|++|=
T Consensus 176 ~~~~~~DvVIIDT 188 (425)
T 2ffh_A 176 ARLEARDLILVDT 188 (425)
T ss_dssp HHHTTCSEEEEEC
T ss_pred HHHCCCCEEEEcC
Confidence 6667788999985
No 360
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.51 E-value=0.01 Score=61.53 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccC---CceEEEeCcchh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSELV 232 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~---~~~i~v~~s~l~ 232 (419)
.+.-|+|.|+||+||||+++.||..++ .....++..++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 455688999999999999999998873 344455555543
No 361
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.48 E-value=0.015 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHH
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVA 216 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA 216 (419)
.+..+++.||+|||||++...+.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 35789999999999998776654
No 362
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.46 E-value=0.0046 Score=63.91 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=43.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcchh-------hh---------hh---c-hhHHHHHHHHHH
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV-------QK---------YI---G-EGSRMVRELFVM 249 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l~-------~~---------~~---g-~~~~~i~~lf~~ 249 (419)
..+..|+|.|+||+||||++..||..+ +..+..+++..+. .. +. + .....+...+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346679999999999999999999654 4455555542110 00 00 0 111223445556
Q ss_pred HHhhCCceEEeccc
Q 014743 250 AREHAPSIIFMDEI 263 (419)
Q Consensus 250 a~~~~psVl~iDEi 263 (419)
+.+..+.++|||=.
T Consensus 179 ~~~~~~DvvIIDTp 192 (504)
T 2j37_W 179 FKNENFEIIIVDTS 192 (504)
T ss_dssp HHHTTCCEEEEEEC
T ss_pred HHHCCCcEEEEeCC
Confidence 66677889999873
No 363
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.46 E-value=0.0078 Score=55.74 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=29.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhh
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~ 234 (419)
...+.|.||||+||||+++.|+..++.+.+ +..+++..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR~ 45 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLRA 45 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHHH
Confidence 356789999999999999999999977654 44455443
No 364
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.46 E-value=0.0013 Score=64.55 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=27.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEEeC
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~ 228 (419)
.-+++.||+|||||++++.||..++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999998866665544
No 365
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.44 E-value=0.0013 Score=62.71 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchh
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 232 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~ 232 (419)
+..|.|.|++||||||+++.|+ .++.++ +++..+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~ 109 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLG 109 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHH
Confidence 4568899999999999999999 566554 5555543
No 366
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.42 E-value=0.0059 Score=64.67 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCcch
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL 231 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s~l 231 (419)
.+..|+|.|+|||||||++++|+..+ +.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45678999999999999999999988 888988875443
No 367
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.42 E-value=0.0014 Score=65.67 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~ 228 (419)
+.-+++.||+|+|||+|+..||..++..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3467899999999999999999988776666554
No 368
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=96.41 E-value=0.021 Score=57.42 Aligned_cols=41 Identities=29% Similarity=0.398 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhhhhhchhHHHHHHHHHHHHh
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMARE 252 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~~~~g~~~~~i~~lf~~a~~ 252 (419)
...|+-||.+|+|||+..-- . ....|-.+..+..+|..+..
T Consensus 139 n~tifAYGqTGSGKTyTM~G------~-----------~~~~Giipr~~~~lF~~i~~ 179 (412)
T 3u06_A 139 NICIFAYGQTGSGKTYTMDG------V-----------PESVGVIPRTVDLLFDSIRG 179 (412)
T ss_dssp CEEEEEESSTTSSHHHHHTE------E-----------TTEECHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCCCeeEecC------C-----------CCCCccHHHHHHHHHHhhhh
Confidence 45677899999999988621 0 11245566667777776653
No 369
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.39 E-value=0.002 Score=57.84 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhccCCc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTDCT 222 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~~~ 222 (419)
-++|.||+|+|||||++.|.......
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 38899999999999999998765433
No 370
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.36 E-value=0.014 Score=51.80 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.8
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLAR 213 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~Lak 213 (419)
++.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 4679999999999997544
No 371
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.34 E-value=0.0079 Score=60.96 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=46.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc----CCceEEEeCcchhhh-------h---------h---c-hhHHHHHHHHH
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGSELVQK-------Y---------I---G-EGSRMVRELFV 248 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~s~l~~~-------~---------~---g-~~~~~i~~lf~ 248 (419)
.+|..+++.|++|+||||++-.||..+ +..+.-+++.-+... + . + .....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356788999999999999999998654 556666666532110 0 0 0 11223356677
Q ss_pred HHHhhCCceEEecc
Q 014743 249 MAREHAPSIIFMDE 262 (419)
Q Consensus 249 ~a~~~~psVl~iDE 262 (419)
.++...+.+|+||=
T Consensus 178 ~~~~~~~D~VIIDT 191 (433)
T 2xxa_A 178 EAKLKFYDVLLVDT 191 (433)
T ss_dssp HHHHTTCSEEEEEC
T ss_pred HHHhCCCCEEEEEC
Confidence 77766789999986
No 372
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.28 E-value=0.0045 Score=62.73 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS 229 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s 229 (419)
+|..++|.||+|+||||++..||..+ +..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45679999999999999999999865 3455555543
No 373
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.20 E-value=0.026 Score=51.37 Aligned_cols=18 Identities=44% Similarity=0.434 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCChHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~La 212 (419)
++.+++.+|+|+|||+.+
T Consensus 62 ~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEeCCCCcHHHHH
Confidence 467999999999999853
No 374
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.19 E-value=0.018 Score=52.13 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=16.3
Q ss_pred CCCeEEEEcCCCChHHHHHH
Q 014743 194 QPKGVLLYGPPGTGKTLLAR 213 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~Lak 213 (419)
.++.+++.+|+|+|||..+-
T Consensus 56 ~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHH
Confidence 35679999999999998543
No 375
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.18 E-value=0.001 Score=60.71 Aligned_cols=26 Identities=42% Similarity=0.479 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
.++..+.|.||+|+|||||+++|+..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35677899999999999999999974
No 376
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.18 E-value=0.02 Score=51.57 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCChHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~La 212 (419)
++.+++.+|+|+|||..+
T Consensus 41 ~~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 41 GESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp TCCEEEECCSSHHHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 367899999999999863
No 377
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.16 E-value=0.019 Score=61.02 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHhhcccCChhHHhhcCCCCCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCc
Q 014743 166 LDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS 229 (419)
Q Consensus 166 ~~~~~~~l~~~i~~~l~~~~~~~~~gi~~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s 229 (419)
.++|++++..++.. +.-.|+.||||||||+++-.+..++ +..++-+..+
T Consensus 191 N~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 56677777776532 2356899999999998655544332 4444444443
No 378
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.16 E-value=0.0029 Score=61.35 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
+.++..+.|.||+|+|||||++.|++.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4566678899999999999999999865
No 379
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.13 E-value=0.0031 Score=58.24 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
..+.-+.|.||||+||||+++.|+..++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3566788999999999999999999875
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.07 E-value=0.0041 Score=59.63 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
..|..+.+.||+||||||+++.|+..+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4566788999999999999999998764
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.02 E-value=0.0028 Score=61.18 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
..+..+.|.||+|+|||||++.|++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556688999999999999999998654
No 382
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.01 E-value=0.012 Score=52.93 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=39.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCc--------chhhhhhchh-----HHHHHHHHHHHHhhCCce
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS--------ELVQKYIGEG-----SRMVRELFVMAREHAPSI 257 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s--------~l~~~~~g~~-----~~~i~~lf~~a~~~~psV 257 (419)
.+.-.+++||.|+||||.+-.++..+ +..++.+... .+.+ ..|.. -....++++.+. ..+.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~~~~i~~~~~-~~~dv 84 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKNSREILKYFE-EDTEV 84 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEEC-TTSCEEECEEESSSTHHHHHCC-TTCSE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCCHHHHHHHHh-ccCCE
Confidence 34567889999999999888887654 3343333211 1111 11210 000124444433 24689
Q ss_pred EEecccccc
Q 014743 258 IFMDEIDSI 266 (419)
Q Consensus 258 l~iDEiD~l 266 (419)
|+|||+.-+
T Consensus 85 ViIDEaqfl 93 (191)
T 1xx6_A 85 IAIDEVQFF 93 (191)
T ss_dssp EEECSGGGS
T ss_pred EEEECCCCC
Confidence 999997764
No 383
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.00 E-value=0.004 Score=56.28 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=26.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceE
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFI 224 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i 224 (419)
..|.|.||+|||||++++.||..++.+|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 35889999999999999999999999977
No 384
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.97 E-value=0.0017 Score=58.34 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHhccC
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
-|.|.||+||||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 385
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.95 E-value=0.037 Score=53.14 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLARAVA 216 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA 216 (419)
.+.+++.+|+|+|||+.+-..+
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~ 65 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPL 65 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHH
Confidence 3689999999999998765444
No 386
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.92 E-value=0.022 Score=47.91 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHhc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~ 218 (419)
-.+++.|++|+|||+|++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999863
No 387
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.92 E-value=0.01 Score=50.37 Aligned_cols=21 Identities=52% Similarity=0.809 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHh
Q 014743 197 GVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~ 217 (419)
.+++.|++|+|||+|++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999975
No 388
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.90 E-value=0.004 Score=54.54 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccC
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
.-.+|+||+|+|||+++++|+..+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3678999999999999999987654
No 389
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.85 E-value=0.054 Score=49.19 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=29.0
Q ss_pred CCCcccccCcHHHHHHHHHHh-hcccCCh-hHHhhcCCCCCCeEEEEcCCCChHHHHH
Q 014743 157 DSTYDMIGGLDQQIKEIKEVI-ELPIKHP-ELFESLGIAQPKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i-~~~l~~~-~~~~~~gi~~p~~iLL~GPpGtGKT~La 212 (419)
..+|++++-.+..++.+.+.= ..|..++ +.+.. +..++.+++.+|+|+|||...
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPL--GRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHH
Confidence 356777755555555554421 0111111 11111 123567999999999999863
No 390
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.85 E-value=0.0038 Score=60.78 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
.|.-+.|.||+||||||+++.|+..+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344688999999999999999998764
No 391
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.84 E-value=0.019 Score=56.31 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
.+..+.|.|+||+||||++..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998754
No 392
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.0038 Score=63.85 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=26.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 189 SLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 189 ~~gi~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
++.+.++..++|.||+|||||||+|.|++..
T Consensus 132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred ceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4456788889999999999999999999854
No 393
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.79 E-value=0.0038 Score=59.78 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccC---CceEEEeCcchh
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSELV 232 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~---~~~i~v~~s~l~ 232 (419)
+.-|.|.||+||||||+++.|+..++ ..+..+++.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 44688999999999999999998765 335556655554
No 394
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.79 E-value=0.01 Score=50.79 Aligned_cols=23 Identities=48% Similarity=0.625 Sum_probs=20.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHhc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~ 218 (419)
-.+++.|++|+|||+|++.+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999999863
No 395
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.78 E-value=0.0099 Score=57.53 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHhcc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
.-++|.||+|+||||+++.|++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 357899999999999999999754
No 396
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.77 E-value=0.0048 Score=60.82 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=25.8
Q ss_pred CCCC--CCeEEEEcCCCChHHHHHHHHHhccCC
Q 014743 191 GIAQ--PKGVLLYGPPGTGKTLLARAVAHHTDC 221 (419)
Q Consensus 191 gi~~--p~~iLL~GPpGtGKT~LakalA~~~~~ 221 (419)
.+.+ +..+.|.||+|||||||++.|++.+..
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445 678999999999999999999987644
No 397
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.74 E-value=0.059 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
-.|+|.|++|+|||+|++.+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4589999999999999999986
No 398
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.72 E-value=0.0057 Score=54.11 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
.....+.|.||+|+||||+++.|+..+
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 345678899999999999999998764
No 399
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.71 E-value=0.023 Score=52.03 Aligned_cols=54 Identities=19% Similarity=0.142 Sum_probs=28.8
Q ss_pred CCCcccccCcHHHHHHHHHHh-hcccCCh-hHHhhcCCCCCCeEEEEcCCCChHHHHH
Q 014743 157 DSTYDMIGGLDQQIKEIKEVI-ELPIKHP-ELFESLGIAQPKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i-~~~l~~~-~~~~~~gi~~p~~iLL~GPpGtGKT~La 212 (419)
..+|++++=.+..++.+.+.= ..|...+ +.+.. +-.++.+++.+|+|+|||..+
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~~~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIP--CIKGYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEECCCSSHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHH
Confidence 345777754555555554321 1111111 11111 123467999999999999764
No 400
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.70 E-value=0.0042 Score=64.93 Aligned_cols=41 Identities=29% Similarity=0.287 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccC----CceEEEeCcchh
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTD----CTFIRVSGSELV 232 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~----~~~i~v~~s~l~ 232 (419)
+.++..+.|.||+|||||||+++|++.+. ..+..+++..+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 35667789999999999999999999774 234457776653
No 401
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.70 E-value=0.045 Score=55.77 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
.+..|+|.|.||+||||+++.|+..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456789999999999999999998764
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.029 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
+.-.+++.|++|+|||+|++.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999999863
No 403
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.66 E-value=0.053 Score=53.10 Aligned_cols=56 Identities=21% Similarity=0.132 Sum_probs=29.7
Q ss_pred CCCcccccCcHHHHHHHHHHh-hcccCCh-hHHhhcCCCCCCeEEEEcCCCChHHHHHHH
Q 014743 157 DSTYDMIGGLDQQIKEIKEVI-ELPIKHP-ELFESLGIAQPKGVLLYGPPGTGKTLLARA 214 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i-~~~l~~~-~~~~~~gi~~p~~iLL~GPpGtGKT~Laka 214 (419)
..+|++++=.+..++.+.+.= ..|..++ +.+.. +..++.+++.+|+|+|||+.+-.
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~~~~~li~a~TGsGKT~~~~~ 77 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPV--AITGRDILARAKNGTGKTAAFVI 77 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH--HHHTCCEEEECCTTSCHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhcCCCEEEECCCCcHHHHHHHH
Confidence 346777765555666665421 1111111 11111 11235699999999999986543
No 404
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.61 E-value=0.02 Score=58.50 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
.+..++|+||||+|||+|++.++...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45679999999999999999998643
No 405
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.61 E-value=0.0099 Score=60.34 Aligned_cols=121 Identities=15% Similarity=0.166 Sum_probs=67.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccC--CceEEEeCc---chhh------------h---hhchh---H-H--HHHH
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTD--CTFIRVSGS---ELVQ------------K---YIGEG---S-R--MVRE 245 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~--~~~i~v~~s---~l~~------------~---~~g~~---~-~--~i~~ 245 (419)
+..+..+.|.||+|||||||++.|++... ...+.+.+. ++.. + |+... . . .+..
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~ 233 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAA 233 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHH
Confidence 56777899999999999999999999764 345556554 2211 1 11110 0 0 0111
Q ss_pred -H---HHHHHh-hCCceEEecccccccccc-------cC-CCCCCCCHHHHHHHHHHHHHccccccCCC-----eEEEEE
Q 014743 246 -L---FVMARE-HAPSIIFMDEIDSIGSAR-------ME-SGSGNGDSEVQRTMLELLNQLDGFEASNK-----IKVLMA 307 (419)
Q Consensus 246 -l---f~~a~~-~~psVl~iDEiD~l~~~r-------~~-~~~~~~~~~~~~~l~~lL~~l~~~~~~~~-----v~VI~t 307 (419)
+ .+..+. ..-...++|.+..+.... .+ ..+.+.++.....+.+++..+.......+ ..|+++
T Consensus 234 ~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~ 313 (438)
T 2dpy_A 234 YATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTE 313 (438)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECS
T ss_pred HHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEe
Confidence 0 011111 122356778776554211 11 11456788888888888877632100224 268888
Q ss_pred eCCcc
Q 014743 308 TNRID 312 (419)
Q Consensus 308 Tn~~~ 312 (419)
||+.+
T Consensus 314 tHdl~ 318 (438)
T 2dpy_A 314 GDDQQ 318 (438)
T ss_dssp SSCSC
T ss_pred CCCcc
Confidence 88875
No 406
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.60 E-value=0.0085 Score=58.93 Aligned_cols=119 Identities=16% Similarity=0.309 Sum_probs=66.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhccCCc--eEEEeCcch--hhhhhc------------------h-hHHHHHHH--
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--FIRVSGSEL--VQKYIG------------------E-GSRMVREL-- 246 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~~~~--~i~v~~s~l--~~~~~g------------------~-~~~~i~~l-- 246 (419)
+..+..+.|.||+|+|||||++.|++..... .+.+.+... +..+++ . ....+...
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~ 147 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFT 147 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHH
Confidence 4677889999999999999999999976433 344433210 001110 0 01111111
Q ss_pred -HHHH---HhhCC-ceEEeccccccccc-------ccCCC-CCCCCHHHHHHHHHHHHHccccccCCCe-----EEEEEe
Q 014743 247 -FVMA---REHAP-SIIFMDEIDSIGSA-------RMESG-SGNGDSEVQRTMLELLNQLDGFEASNKI-----KVLMAT 308 (419)
Q Consensus 247 -f~~a---~~~~p-sVl~iDEiD~l~~~-------r~~~~-~~~~~~~~~~~l~~lL~~l~~~~~~~~v-----~VI~tT 308 (419)
+..+ +.... .++++|.+..+... -.+.+ +.+.++.....+.+++..+.. ...+. .|+++|
T Consensus 148 ~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~--~~~GsiT~~~tVl~~t 225 (347)
T 2obl_A 148 ATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGP--APKGSITAIYTVLLES 225 (347)
T ss_dssp HHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEE--CSSSEEEEEEEEECCS
T ss_pred HHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhC--CCCCCeeeEEEEEEeC
Confidence 1112 12222 34556766654421 11112 357889999999998877632 13344 677888
Q ss_pred CCcc
Q 014743 309 NRID 312 (419)
Q Consensus 309 n~~~ 312 (419)
++.+
T Consensus 226 hdl~ 229 (347)
T 2obl_A 226 DNVN 229 (347)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8765
No 407
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.58 E-value=0.023 Score=55.44 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
...+..+.|.|+||+||||+++.|+..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456678899999999999999998653
No 408
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.57 E-value=0.0091 Score=53.20 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHHHhccCCceEEEeCcc
Q 014743 198 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 230 (419)
Q Consensus 198 iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~ 230 (419)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 77788877654
No 409
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.014 Score=51.05 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
.....+++.|++|+|||+|+.++.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999874
No 410
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.55 E-value=0.036 Score=48.23 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
....+++.|++|+|||+|++.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999864
No 411
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.52 E-value=0.017 Score=53.03 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLAR 213 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~Lak 213 (419)
++.+++.+|+|+|||...-
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 4679999999999998643
No 412
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.51 E-value=0.0039 Score=55.57 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=24.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
+.+.++..+.|.|++|+|||||++++++.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 55667777999999999999999999864
No 413
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.51 E-value=0.0043 Score=58.08 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
..+..|.|.|++||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4566788999999999999999999883
No 414
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.50 E-value=0.0064 Score=57.61 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~ 218 (419)
.+.|.||+|+|||||+++|++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999974
No 415
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.49 E-value=0.047 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
.+..+++.|+||+|||+|++++++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999863
No 416
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.48 E-value=0.079 Score=48.98 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=47.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEeCc-------chhhhhhchh-----HHHHHHHHHHHHhhCCceEE
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGS-------ELVQKYIGEG-----SRMVRELFVMAREHAPSIIF 259 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~~s-------~l~~~~~g~~-----~~~i~~lf~~a~~~~psVl~ 259 (419)
+.-.+++||.|+||||.+-..+... +..++.+... .+.++. |.. -....++++.+ ..+.+|+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvVi 95 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIG 95 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEE
Confidence 4456788999999997665555432 3333333211 111111 100 00012344444 4578999
Q ss_pred ecccccccccccCCCCCCCCHHHHHHHHHHHHHccccccCCCeEEEEEeCCc
Q 014743 260 MDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRI 311 (419)
Q Consensus 260 iDEiD~l~~~r~~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~VI~tTn~~ 311 (419)
|||+--+ .+ +.++++.++ ..++.||++..+.
T Consensus 96 IDEaQF~-----------~~------v~el~~~l~----~~gi~VI~~GL~~ 126 (234)
T 2orv_A 96 IDEGQFF-----------PD------IVEFCEAMA----NAGKTVIVAALDG 126 (234)
T ss_dssp ESSGGGC-----------TT------HHHHHHHHH----HTTCEEEEECCSB
T ss_pred EEchhhh-----------hh------HHHHHHHHH----hCCCEEEEEeccc
Confidence 9998764 11 334444442 1456788887763
No 417
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.44 E-value=0.035 Score=51.42 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.0
Q ss_pred CCCeEEEEcCCCChHHHHH
Q 014743 194 QPKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~La 212 (419)
.++.+++.+|+|+|||..+
T Consensus 79 ~~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 79 QGRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp TTCCEEEECCTTSCHHHHH
T ss_pred CCCCEEEEcCCCCCchhHh
Confidence 3477999999999999864
No 418
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.44 E-value=0.007 Score=61.16 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=24.0
Q ss_pred cCCCCCCe--EEEEcCCCChHHHHHHHHHhc
Q 014743 190 LGIAQPKG--VLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 190 ~gi~~p~~--iLL~GPpGtGKT~LakalA~~ 218 (419)
+.+.++.. +.|.||+|+|||||+++|++.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34566777 899999999999999999975
No 419
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.43 E-value=0.008 Score=55.39 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
|..+.|.|++|+||||+++.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46688999999999999999999883
No 420
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.077 Score=46.28 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHhc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~ 218 (419)
-.|+|.|++|+|||+|++.+.+.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35899999999999999999863
No 421
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.39 E-value=0.036 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
..+++.|++|+|||+|++.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4699999999999999999986
No 422
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.38 E-value=0.0083 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
.+.++||.|+||+||||+|.++...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4678999999999999999999874
No 423
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.38 E-value=0.0081 Score=63.10 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccC----CceEEEeCcc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTD----CTFIRVSGSE 230 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~----~~~i~v~~s~ 230 (419)
.+..|+|.|+||+||||++++|+..++ .+++.+++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345688999999999999999999875 6777777544
No 424
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.29 E-value=0.34 Score=46.90 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLARAVA 216 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA 216 (419)
++.+++.+|+|+|||..+-..+
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHH
Confidence 4679999999999998654333
No 425
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.29 E-value=0.025 Score=53.81 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccCCceEEEeC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 228 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~ 228 (419)
++.+++.+|+|+|||..+-..+-..+...+.+.+
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 3579999999999998776655444444444443
No 426
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.29 E-value=0.0073 Score=55.41 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
.++..+.|.||+|+||||+++.|++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45566889999999999999999987
No 427
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.29 E-value=0.0087 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHhc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~ 218 (419)
-.++|.||+|+|||+|++.+++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999999975
No 428
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.28 E-value=0.0091 Score=54.98 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=26.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEE
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIR 225 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~ 225 (419)
..|.+.|++|||||++++.||..++.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457889999999999999999999988754
No 429
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.27 E-value=0.052 Score=58.13 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=19.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHH
Q 014743 192 IAQPKGVLLYGPPGTGKTLLARA 214 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~Laka 214 (419)
+..+..+++.||+|+|||+.+-.
T Consensus 43 ~~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 43 LLEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TTTTCCEEEECCTTSCHHHHHHH
T ss_pred hcCCCcEEEEcCCCCcHHHHHHH
Confidence 45578899999999999998743
No 430
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.27 E-value=0.0087 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHhc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~ 218 (419)
.+.|.||+|+|||||++.+++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999974
No 431
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.24 E-value=0.03 Score=49.03 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHhc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~ 218 (419)
.++|.|++|+|||+|++.+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888763
No 432
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.22 E-value=0.051 Score=53.66 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~ 218 (419)
.+.|.|+||+|||||.+++++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4889999999999999999864
No 433
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.15 E-value=0.011 Score=52.01 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
...+.|.|++|+||||++..|+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468899999999999999999865
No 434
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.14 E-value=0.019 Score=59.32 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCC
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDC 221 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~ 221 (419)
.+..+.|.|++||||||++++||..++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4456889999999999999999998874
No 435
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.14 E-value=0.0064 Score=53.61 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=25.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccC-----CceEEEeCcch
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSEL 231 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~-----~~~i~v~~s~l 231 (419)
..+.|.||+|||||||++.|+..+. ...+.+++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence 4578999999999999999998653 45667766553
No 436
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.10 E-value=0.053 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
-.+++.|++|+|||+|++.+.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999999986
No 437
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.08 E-value=0.012 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
+.-.+|+||+|+|||++..||.--+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999998533
No 438
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.06 E-value=0.025 Score=55.44 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
+..+.|.|+||+|||||.+++++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 456889999999999999999974
No 439
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.04 E-value=0.021 Score=52.31 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=25.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccCCc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTDCT 222 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~~~ 222 (419)
.+.-|.|.||+|+||||+++.|+..++..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 46678999999999999999999988754
No 440
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.02 E-value=0.081 Score=51.98 Aligned_cols=55 Identities=24% Similarity=0.299 Sum_probs=29.7
Q ss_pred CCcccccCcHHHHHHHHHHh-hcccCCh-hHHhhcCCCCCCeEEEEcCCCChHHHHHHH
Q 014743 158 STYDMIGGLDQQIKEIKEVI-ELPIKHP-ELFESLGIAQPKGVLLYGPPGTGKTLLARA 214 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i-~~~l~~~-~~~~~~gi~~p~~iLL~GPpGtGKT~Laka 214 (419)
.+|++++=.+..++.+...= ..|..++ +.+.. +-.++.+++.+|+|+|||..+-.
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~~~~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQ--IIKGRDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCCchHHHHH
Confidence 35677654555555555421 1111111 11111 12346799999999999976543
No 441
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.01 E-value=0.2 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=17.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
+.+++.+|+|+|||..+-..+-
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~ 41 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICE 41 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHH
Confidence 5789999999999987655553
No 442
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.99 E-value=0.07 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHh
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~ 217 (419)
+-.|+|.|+||+|||+|+.+|.+
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 45699999999999999999986
No 443
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.97 E-value=0.081 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
-.|+|.|++|+|||+|+..+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 444
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.94 E-value=0.016 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
....++|.|++|+|||+|+.++++..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44679999999999999999999743
No 445
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.92 E-value=0.012 Score=54.38 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
.+.-|.|.||+|+||||+++.|+..+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 446
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.91 E-value=0.014 Score=58.82 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHh
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~ 217 (419)
.+..+.|.||+|+|||||+++|++
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 344688999999999999999998
No 447
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.89 E-value=0.013 Score=53.40 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
.+.-|.|.||+|+||||+++.|+..+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 355688999999999999999998763
No 448
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.86 E-value=0.2 Score=48.45 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.2
Q ss_pred CCCeEEEEcCCCChHHHHHHH
Q 014743 194 QPKGVLLYGPPGTGKTLLARA 214 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~Laka 214 (419)
.++.+++.+|+|+|||+.+-.
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~ 63 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSL 63 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 347899999999999986543
No 449
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.85 E-value=0.15 Score=46.47 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCChHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~La 212 (419)
++.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 467999999999999863
No 450
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.83 E-value=0.046 Score=55.41 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
.+-.++.|+||||||+++..++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 345788999999999999988753
No 451
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.83 E-value=0.013 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
..+.|.|++|+|||+|++.+++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999986
No 452
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.81 E-value=0.07 Score=57.22 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=18.1
Q ss_pred CCCCCeEEEEcCCCChHHHHH
Q 014743 192 IAQPKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 192 i~~p~~iLL~GPpGtGKT~La 212 (419)
+..+..+++.||+|+|||+.+
T Consensus 36 ~~~~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGKNALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTCEEEEECCGGGCHHHHH
T ss_pred hcCCCcEEEEcCCccHHHHHH
Confidence 345788999999999999887
No 453
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.81 E-value=0.012 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~ 218 (419)
.++|.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 454
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.79 E-value=0.014 Score=59.98 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=29.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHhcc--CCceEEEeCcch
Q 014743 190 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSEL 231 (419)
Q Consensus 190 ~gi~~p~~iLL~GPpGtGKT~LakalA~~~--~~~~i~v~~s~l 231 (419)
+.+.+ ..+.|.||+|+|||||+++|+... ...-+.+++..+
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 34566 788999999999999999999854 333445554443
No 455
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.79 E-value=0.016 Score=51.30 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
...-.+++.|++|+|||+|++.+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 44567999999999999999999863
No 456
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.76 E-value=0.017 Score=48.52 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~ 218 (419)
.+++.|++|+|||+|++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 457
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.73 E-value=0.015 Score=49.19 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
.-.+++.|++|+|||+|++++.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
No 458
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.064 Score=60.58 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLARAVA 216 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA 216 (419)
+..+|+.||+|+|||+.+-..+
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHH
Confidence 4679999999999998765443
No 459
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.72 E-value=0.016 Score=50.28 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
++..++|.|+||+|||+|++++++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999874
No 460
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.69 E-value=0.022 Score=48.84 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHh
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~ 217 (419)
..+..+++.|++|+|||+|++.+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456799999999999999999986
No 461
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.69 E-value=0.061 Score=47.51 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
-.++|.|++|+|||+|++.+++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999964
No 462
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.68 E-value=0.019 Score=51.59 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
....++|.|++|+|||||+..++..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999864
No 463
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.64 E-value=0.1 Score=50.69 Aligned_cols=18 Identities=39% Similarity=0.329 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCChHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~La 212 (419)
++.+++.+|+|+|||..+
T Consensus 58 ~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 58 GHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp TCCEEECCCSSHHHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 367999999999999864
No 464
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.63 E-value=0.059 Score=50.24 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.3
Q ss_pred CeEEEEcCCCChHHHHHH
Q 014743 196 KGVLLYGPPGTGKTLLAR 213 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~Lak 213 (419)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 568999999999998643
No 465
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.61 E-value=0.036 Score=50.62 Aligned_cols=33 Identities=15% Similarity=-0.053 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEe
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVS 227 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~ 227 (419)
+.-.+++||.|+||||.+-.++... +..++.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3445689999999999888877643 44444443
No 466
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.60 E-value=0.02 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHhc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~ 218 (419)
-.+++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 467
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.59 E-value=0.018 Score=53.45 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
.+.-|.|.||+|+||||+++.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999866
No 468
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.58 E-value=0.019 Score=48.17 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHhc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~ 218 (419)
.+++.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 469
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.57 E-value=0.017 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=20.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
..++|.|++|+|||+|++.+++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999987
No 470
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.56 E-value=0.019 Score=56.61 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
.+..+.|.||||+|||||+++|+....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 456789999999999999999997654
No 471
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.55 E-value=0.023 Score=48.28 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHh
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~ 217 (419)
.....+++.|++|+|||+|++.+..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999975
No 472
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.55 E-value=0.098 Score=48.72 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
.-.+++.|++|+|||+|+.++.+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999864
No 473
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.52 E-value=0.16 Score=50.12 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=24.6
Q ss_pred eEEEEcCCCChHHHHHHHHHhcc----CCceEEEeCc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGS 229 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~~----~~~~i~v~~s 229 (419)
++++.+|+|+|||..+-+++... +...+.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 78999999999999888776543 4455555553
No 474
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.51 E-value=0.092 Score=51.37 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHh
Q 014743 197 GVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~ 217 (419)
.|.+.|++|+|||+|+.++.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 789999999999999999997
No 475
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.47 E-value=0.022 Score=48.19 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHhc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~ 218 (419)
-.+++.|++|+|||+|++++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 476
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.46 E-value=0.022 Score=48.21 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHhc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~ 218 (419)
-.+++.|++|+|||+|++++.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 477
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.46 E-value=0.11 Score=47.80 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
+..+++.|.+|+||||++..+|..+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4557889999999999999999654
No 478
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.45 E-value=0.03 Score=59.25 Aligned_cols=22 Identities=41% Similarity=0.680 Sum_probs=18.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
..+++.||||||||+++..++.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~ 217 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVY 217 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 3578999999999998777654
No 479
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.41 E-value=0.19 Score=49.16 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 014743 195 PKGVLLYGPPGTGKTLLAR 213 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~Lak 213 (419)
++.+++.+|+|+|||+.+-
T Consensus 77 ~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp TCCEEECCCSCSSSHHHHH
T ss_pred CCCEEEECCCCCcccHHHH
Confidence 4669999999999998743
No 480
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.40 E-value=0.023 Score=48.60 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
-.+++.|++|+|||+|++.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999986
No 481
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.023 Score=48.18 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
-.+++.|++|+|||+|++++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 482
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.38 E-value=0.022 Score=52.48 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHhccCC
Q 014743 193 AQPKGVLLYGPPGTGKTLLARAVAHHTDC 221 (419)
Q Consensus 193 ~~p~~iLL~GPpGtGKT~LakalA~~~~~ 221 (419)
..+.-|.|.|++|+||||+++.|+..+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34566888999999999999999987644
No 483
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.37 E-value=0.035 Score=50.56 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=27.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEEeCcchhh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 233 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s~l~~ 233 (419)
-.+.|+|..||||||+++.++. ++.+++ ++..+..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~ 44 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAH 44 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHH
Confidence 3588999999999999999998 776655 4444443
No 484
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.36 E-value=0.029 Score=48.99 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
....+++.|++|+|||+|++.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999864
No 485
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.36 E-value=0.024 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHhc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~ 218 (419)
-.+++.|++|+|||+|++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 486
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.35 E-value=0.04 Score=49.55 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
....++|.|++|+|||+|+..++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999764
No 487
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.34 E-value=0.024 Score=48.56 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~ 218 (419)
.-.+++.|++|+|||+|++.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999863
No 488
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.34 E-value=0.16 Score=49.64 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=29.7
Q ss_pred CCcccccCcHHHHHHHHHHh-hcccCCh-hHHhhcCCCCCCeEEEEcCCCChHHHHH
Q 014743 158 STYDMIGGLDQQIKEIKEVI-ELPIKHP-ELFESLGIAQPKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 158 ~~~~~I~G~~~~~~~l~~~i-~~~l~~~-~~~~~~gi~~p~~iLL~GPpGtGKT~La 212 (419)
.+|++++=....++.+.+.= ..|...+ +.+..+--..++.+++.+|+|+|||..+
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 45666655555566665421 1111111 1111111123578999999999999874
No 489
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.33 E-value=0.023 Score=48.10 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHhc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~ 218 (419)
-.+++.|++|+|||+|++++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 490
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.32 E-value=0.053 Score=54.72 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=27.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHhccCCceEEEeCc
Q 014743 196 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 229 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~~~~~~~i~v~~s 229 (419)
..+++.+|+|+|||..+-.++...+...+.+.+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 4589999999999999888877776666666555
No 491
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.31 E-value=0.096 Score=48.87 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhc
Q 014743 197 GVLLYGPPGTGKTLLARAVAHH 218 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~~ 218 (419)
.++|.|+||||||+|..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999863
No 492
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.25 E-value=0.025 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhcc
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHT 219 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~ 219 (419)
+.-|.|.|++|+||||.++.|+..+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999876
No 493
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.25 E-value=0.022 Score=48.39 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHh
Q 014743 197 GVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 197 ~iLL~GPpGtGKT~LakalA~ 217 (419)
.+++.|++|+|||+|++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999974
No 494
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.25 E-value=0.067 Score=55.76 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhccC---CceEEEeCcch
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSEL 231 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~~---~~~i~v~~s~l 231 (419)
.+..++|.|++|+||||+++.|+..++ .++..+++..+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 356688999999999999999998763 45666665544
No 495
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.22 E-value=0.026 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
-.+++.|++|+|||+|++++.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 496
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.21 E-value=0.11 Score=49.66 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=30.1
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCChh-----HHhhcCCCCCCeEEEEcCCCChHHHHH
Q 014743 157 DSTYDMIGGLDQQIKEIKEVIELPIKHPE-----LFESLGIAQPKGVLLYGPPGTGKTLLA 212 (419)
Q Consensus 157 ~~~~~~I~G~~~~~~~l~~~i~~~l~~~~-----~~~~~gi~~p~~iLL~GPpGtGKT~La 212 (419)
..+|++++-....++.|... .+..|. .+..+--.+++.+++.+|+|+|||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 34677776555556655542 122111 111111124578999999999999753
No 497
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.20 E-value=0.027 Score=47.59 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
-.+++.|++|+|||+|++++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999999986
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.18 E-value=0.026 Score=50.83 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHhccC
Q 014743 195 PKGVLLYGPPGTGKTLLARAVAHHTD 220 (419)
Q Consensus 195 p~~iLL~GPpGtGKT~LakalA~~~~ 220 (419)
+.-.+|+||+|+|||++..||.-.+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35678999999999999999986553
No 499
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.17 E-value=0.041 Score=54.53 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=26.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHhcc---CCceEEEe
Q 014743 194 QPKGVLLYGPPGTGKTLLARAVAHHT---DCTFIRVS 227 (419)
Q Consensus 194 ~p~~iLL~GPpGtGKT~LakalA~~~---~~~~i~v~ 227 (419)
...++++.||+|+|||++++.++... +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999999999999998643 44444444
No 500
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.14 E-value=0.027 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHh
Q 014743 196 KGVLLYGPPGTGKTLLARAVAH 217 (419)
Q Consensus 196 ~~iLL~GPpGtGKT~LakalA~ 217 (419)
-.++|.|++|+|||+|++.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999986
Done!