Query 014744
Match_columns 419
No_of_seqs 297 out of 978
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:06:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01571 A_thal_Cys_rich unch 100.0 1.3E-28 2.8E-33 207.8 7.3 103 296-398 1-104 (104)
2 PF04749 PLAC8: PLAC8 family; 99.9 2.7E-25 5.8E-30 187.0 5.9 99 298-396 1-106 (106)
3 PF05659 RPW8: Arabidopsis bro 98.5 5.7E-06 1.2E-10 74.2 14.3 122 21-143 15-137 (147)
4 COG0497 RecN ATPase involved i 82.1 72 0.0016 34.8 16.7 119 35-156 173-323 (557)
5 TIGR00634 recN DNA repair prot 68.3 1.8E+02 0.004 31.6 20.0 57 36-94 178-234 (563)
6 PRK10787 DNA-binding ATP-depen 62.2 1.7E+02 0.0036 33.5 14.3 109 84-201 166-280 (784)
7 TIGR00763 lon ATP-dependent pr 60.0 1.7E+02 0.0037 33.2 14.0 56 84-140 163-220 (775)
8 PF06760 DUF1221: Protein of u 52.8 1.1E+02 0.0024 28.9 8.9 64 35-98 4-73 (217)
9 KOG4713 Cyclin-dependent kinas 48.1 28 0.00061 32.1 4.2 44 49-92 137-180 (189)
10 COG0466 Lon ATP-dependent Lon 45.7 5E+02 0.011 29.5 14.6 116 95-227 179-301 (782)
11 TIGR00996 Mtu_fam_mce virulenc 44.5 3.1E+02 0.0067 26.7 12.3 60 67-127 229-288 (291)
12 KOG3156 Uncharacterized membra 42.7 75 0.0016 30.3 6.3 30 192-228 179-208 (220)
13 PHA02687 ORF061 late transcrip 38.8 1.1E+02 0.0023 28.7 6.5 46 39-90 168-213 (231)
14 PF12252 SidE: Dot/Icm substra 36.2 2.5E+02 0.0054 33.1 10.1 109 110-226 1042-1170(1439)
15 PF14949 ARF7EP_C: ARF7 effect 34.0 17 0.00037 30.8 0.6 21 300-323 60-80 (103)
16 PF06160 EzrA: Septation ring 33.2 6.7E+02 0.015 27.3 19.3 48 100-147 189-236 (560)
17 PF03286 Pox_Ag35: Pox virus A 31.1 1.2E+02 0.0027 28.6 5.9 44 39-88 139-182 (200)
18 KOG0994 Extracellular matrix g 30.7 1E+03 0.023 28.8 17.3 19 43-61 1587-1605(1758)
19 PF09806 CDK2AP: Cyclin-depend 28.8 46 0.001 31.3 2.6 43 50-92 142-184 (193)
20 PF05835 Synaphin: Synaphin pr 28.7 32 0.00069 30.7 1.4 16 359-374 63-78 (139)
21 cd08329 CARD_BIRC2_BIRC3 Caspa 27.5 2.5E+02 0.0053 23.1 6.5 57 35-92 8-64 (94)
22 PF07851 TMPIT: TMPIT-like pro 25.3 4E+02 0.0086 27.3 8.7 56 35-90 31-86 (330)
23 PHA03089 late transcription fa 25.0 2.2E+02 0.0049 26.6 6.2 67 10-89 109-175 (191)
24 KOG0994 Extracellular matrix g 24.9 1.3E+03 0.028 28.0 13.8 32 102-133 1505-1536(1758)
25 PF07165 DUF1397: Protein of u 24.8 6E+02 0.013 24.1 10.7 97 20-123 49-150 (213)
26 PRK14161 heat shock protein Gr 24.3 5.6E+02 0.012 23.7 8.9 47 101-147 66-112 (178)
27 PF10239 DUF2465: Protein of u 21.1 5.7E+02 0.012 25.9 8.9 46 105-150 152-205 (318)
28 cd08324 CARD_NOD1_CARD4 Caspas 21.0 4.3E+02 0.0094 21.6 6.4 74 39-121 4-77 (85)
29 PF12617 LdpA_C: Iron-Sulfur b 20.6 1.4E+02 0.003 28.0 4.0 36 50-89 146-181 (183)
No 1
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.95 E-value=1.3e-28 Score=207.82 Aligned_cols=103 Identities=39% Similarity=0.778 Sum_probs=86.8
Q ss_pred CCCccCcccccCCCccchhcccchhHhHHHHHHHhCCCCCCchhHHHHHHHHHHhhh-ccccccHhHHHHHHHhCCCCCC
Q 014744 296 EEWHTDLLGCCSEPLLCMKTFFYPCGTFSKIATVATSRHMSSAEACNELMAYSLILS-CCCYTCCIRRKLRKTLNIAGGF 374 (419)
Q Consensus 296 ~~W~~gL~~C~~d~~~C~~~~~cPC~~~g~~~~~l~~g~~~~~~~C~~~~~~~~~~~-cc~~~~~~R~~iR~rygI~g~~ 374 (419)
++|++|||||++|+++|++++||||+++|+|+++++.+..+|...+..+++++.+.+ .++|++.+|++||+||||+|++
T Consensus 1 ~~W~~gL~dC~~d~~~C~~~~~CPc~~~g~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~R~~~R~ry~i~gs~ 80 (104)
T TIGR01571 1 SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFAGECLCGGLTAIAMSALCGFCGCYTCFIRIKLREKYGIQGAP 80 (104)
T ss_pred CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 589999999999999999999999999999999999766655443322223332333 2468889999999999999999
Q ss_pred ccchhhhccCcchHHhHHHHHHHH
Q 014744 375 VDDFLSHFMCCCCALVQEWREVEI 398 (419)
Q Consensus 375 ~~Dc~~~~cC~~Cal~Q~~rEl~~ 398 (419)
++||++++||+||+++|++|||+.
T Consensus 81 ~~D~~~~~~C~~C~lcQ~~RElk~ 104 (104)
T TIGR01571 81 CDDCLTHLFCCFCALCQEHRELKM 104 (104)
T ss_pred cccchHHHHhhhHHHHHHHHHHhC
Confidence 999999999999999999999983
No 2
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.91 E-value=2.7e-25 Score=186.98 Aligned_cols=99 Identities=30% Similarity=0.604 Sum_probs=80.8
Q ss_pred CccCcccccCCCccchhcccchhHhHHHHHHHhCCCCCCch---hHHHH-HHHHHHhh--h-ccccccHhHHHHHHHhCC
Q 014744 298 WHTDLLGCCSEPLLCMKTFFYPCGTFSKIATVATSRHMSSA---EACNE-LMAYSLIL--S-CCCYTCCIRRKLRKTLNI 370 (419)
Q Consensus 298 W~~gL~~C~~d~~~C~~~~~cPC~~~g~~~~~l~~g~~~~~---~~C~~-~~~~~~~~--~-cc~~~~~~R~~iR~rygI 370 (419)
|++|||||++|+++|++++||||+++++++++++.+....+ ..|.. .+.+.+.. + .++|++.+|++||+||||
T Consensus 1 W~~gl~~C~~d~~~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~~~~~~~~R~~iR~ry~I 80 (106)
T PF04749_consen 1 WSTGLCDCFSDPGSCCLACFCPCCSFGQNAERLGDGPRSRGPAFGSCCLCFCCFGCAACLGLGWCYGCSLRQQIRERYGI 80 (106)
T ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCccHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHhCC
Confidence 99999999999999999999999999999999987653322 23321 12222110 1 234888999999999999
Q ss_pred CCCCccchhhhccCcchHHhHHHHHH
Q 014744 371 AGGFVDDFLSHFMCCCCALVQEWREV 396 (419)
Q Consensus 371 ~g~~~~Dc~~~~cC~~Cal~Q~~rEl 396 (419)
+|+.++||++++||+|||++|+.|||
T Consensus 81 ~g~~~~D~~~~~~C~~Cal~Q~~rEl 106 (106)
T PF04749_consen 81 QGSCCEDCCCSCCCPPCALCQEAREL 106 (106)
T ss_pred CCCChhhhHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999996
No 3
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=98.45 E-value=5.7e-06 Score=74.18 Aligned_cols=122 Identities=14% Similarity=0.258 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 014744 21 AVRLIGMIVKAATTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQDRSYLYLL 100 (419)
Q Consensus 21 ~~~la~~I~~aa~~a~~~kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~Sklyll 100 (419)
+-.+...|..+.+.+...|..+.+|..-++.|.|+++||+..+...+..-..-+++|...|++|+.||+.|...+ .|-+
T Consensus 15 ~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~ 93 (147)
T PF05659_consen 15 FGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNL 93 (147)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHH
Confidence 344557778888888999999999999999999999999876655454447889999999999999999999876 5667
Q ss_pred hhchhhhhhHHHHHHHHHHHhcc-cCcchhhhhhHHHHHHHHHH
Q 014744 101 AMGWNIVYQFRKAQTEIDRYLKI-VPLITLVDNARVRERLEDIE 143 (419)
Q Consensus 101 l~~~~i~~~F~~V~~~I~~~L~~-lPl~~l~is~ev~Eqvelv~ 143 (419)
+.-.....+..++..+|.+.++. +|+......-+++..+..+.
T Consensus 94 ~kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~ 137 (147)
T PF05659_consen 94 YKKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMN 137 (147)
T ss_pred HhhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999994 78777655555554444443
No 4
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=82.12 E-value=72 Score=34.81 Aligned_cols=119 Identities=25% Similarity=0.236 Sum_probs=66.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhccc--------------hHHHHH
Q 014744 35 ARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQDR--------------SYLYLL 100 (419)
Q Consensus 35 a~~~kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~--------------Sklyll 100 (419)
....+++-+++++++++|.-=++||...+ ..|.-...|.+-+.-|..+..|.+.+++. +.++..
T Consensus 173 l~~~~~~~~e~~~~~d~L~fq~~Ele~~~--l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a 250 (557)
T COG0497 173 LEDLQEKERERAQRADLLQFQLEELEELN--LQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRA 250 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Confidence 35567777899999999999999997543 23334445554444444444444443211 122221
Q ss_pred hhc------------------hhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHhhhhhcCChhhH
Q 014744 101 AMG------------------WNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLEDIEKDQREYTLDEEDQ 156 (419)
Q Consensus 101 l~~------------------~~i~~~F~~V~~~I~~~L~~lPl~~l~is~ev~Eqvelv~~q~r~~~~d~~d~ 156 (419)
++. +....+..++..+|.++++.++++...+ ++|-+++..++.=.|||..+++|.
T Consensus 251 ~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L-~~ve~Rl~~L~~l~RKY~~~~~~l 323 (557)
T COG0497 251 LEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRL-EEVEERLFALKSLARKYGVTIEDL 323 (557)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHHHHHhCCCHHHH
Confidence 111 1123345556666666666666665443 455566666655555777666554
No 5
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=68.29 E-value=1.8e+02 Score=31.56 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=39.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhccc
Q 014744 36 RMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQDR 94 (419)
Q Consensus 36 ~~~kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~ 94 (419)
...+++-.++.++++.+.--++||+..+ ..|.-...|+.-+..|..+..+.+.++..
T Consensus 178 ~~l~~~~~~~~~eld~L~~ql~ELe~~~--l~~~E~e~L~~e~~~L~n~e~i~~~~~~~ 234 (563)
T TIGR00634 178 KDRQQKEQELAQRLDFLQFQLEELEEAD--LQPGEDEALEAEQQRLSNLEKLRELSQNA 234 (563)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhCC--cCCCcHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4455566788899999999999998654 34555566777777776666666666544
No 6
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=62.17 E-value=1.7e+02 Score=33.45 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=60.1
Q ss_pred HHHHHHHhc-cchHHHHHhhchhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHhhhhhcCChhhHHHHHHH
Q 014744 84 SYLLVNSCQ-DRSYLYLLAMGWNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLEDIEKDQREYTLDEEDQKMQDAI 162 (419)
Q Consensus 84 Ak~Lv~~C~-~~Sklylll~~~~i~~~F~~V~~~I~~~L~~lPl~~l~is~ev~Eqvelv~~q~r~~~~d~~d~~l~~~i 162 (419)
|..+..... +-..-+.+++...+..+++.+..-|.+-+..+-+. ..|..+|+++++ +++|+|.+-..=..+++.+
T Consensus 166 ad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~-~~I~~~v~~~~~---k~q~e~~lreq~~~i~~el 241 (784)
T PRK10787 166 ADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVE-KRIRNRVKKQME---KSQREYYLNEQMKAIQKEL 241 (784)
T ss_pred HHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh---hhhhhhcchhhhhhhcccc
Confidence 444444444 33555788999999999999999998877766533 456677776664 4445555433323333322
Q ss_pred hhcCCCC-ccHHHHHHHhhcCCCCCccchH----HHHHHHHHHH
Q 014744 163 LRREPSK-HETMVLKKTLSTSYPKMGFNEV----LQKENEKLQL 201 (419)
Q Consensus 163 l~~e~~~-~d~~~l~~~~~~~~~~L~l~s~----l~~E~~~L~~ 201 (419)
=. +.+. .+...+++-+.. +++..- +.+|++.|+.
T Consensus 242 g~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~ 280 (784)
T PRK10787 242 GE-MDDAPDENEALKRKIDA----AKMPKEAKEKAEAELQKLKM 280 (784)
T ss_pred cC-CCcchhHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHh
Confidence 00 0011 222333333344 555553 6666666655
No 7
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=60.01 E-value=1.7e+02 Score=33.22 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=37.3
Q ss_pred HHHHHHHhc-c-chHHHHHhhchhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHH
Q 014744 84 SYLLVNSCQ-D-RSYLYLLAMGWNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLE 140 (419)
Q Consensus 84 Ak~Lv~~C~-~-~Sklylll~~~~i~~~F~~V~~~I~~~L~~lPl~~l~is~ev~Eqve 140 (419)
|..+..... . -..-+.+++...+..+++.+..-|.+-+..+-+. ..|...|+++++
T Consensus 163 ad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~-~~I~~~v~~~~~ 220 (775)
T TIGR00763 163 ADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLKKELELLKLQ-NKITKKVEEKME 220 (775)
T ss_pred HHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 444444444 3 4555788889999999999998888877665533 345666666654
No 8
>PF06760 DUF1221: Protein of unknown function (DUF1221); InterPro: IPR010632 This is a group of plant proteins, most of which are hypothetical and of unknown function. All members contain the IPR000719 from INTERPRO domain, suggesting that they may possess kinase activity.
Probab=52.79 E-value=1.1e+02 Score=28.87 Aligned_cols=64 Identities=19% Similarity=0.401 Sum_probs=45.0
Q ss_pred HHHhHHHHHHHHHHHHH-HHHHHHHHhhh-----ccCCChhhhhHHHHHHHHHHHHHHHHHHhccchHHH
Q 014744 35 ARMHKKNCRQFAQHLKL-IGNLLEQLKIS-----ELKKYPETREPLEQLEDALRRSYLLVNSCQDRSYLY 98 (419)
Q Consensus 35 a~~~kk~C~~Larrv~l-L~~lLeeL~~~-----~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~Skly 98 (419)
.+.|+++|.-|+.--.+ +..+-+|++.. .-..-.....+|.+|+.+++.+-..|..|=+..-+|
T Consensus 4 iqIN~RQC~LL~d~f~~A~~~va~eir~nLrfeEk~tKWr~LE~PLREl~rvfregE~YvR~CLd~k~WW 73 (217)
T PF06760_consen 4 IQINPRQCCLLADIFALAFDTVAEEIRQNLRFEEKNTKWRPLEQPLRELHRVFREGEGYVRHCLDPKDWW 73 (217)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhhchHhhcCcccccchhHHHHHHHHhhhHHHHHHccCchhHH
Confidence 46799999988865543 44556666532 011233667899999999999999999999653333
No 9
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=48.10 E-value=28 Score=32.11 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhc
Q 014744 49 LKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQ 92 (419)
Q Consensus 49 v~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~ 92 (419)
-.-|+.++||++..-.+-....+.+.++|+.-+..|+.||+.|.
T Consensus 137 Y~~LL~vieEmgkeirpTyagsks~~ERLKr~I~hAR~lVRecl 180 (189)
T KOG4713|consen 137 YADLLSVIEEMGKEIRPTYAGSKSAMERLKRDIIHARLLVRECL 180 (189)
T ss_pred HHHHHHHHHHHhcccCccccccccHHHHHHhhHHHHHHHHHHHH
Confidence 33456677888743333444567889999999999999999996
No 10
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=45.72 E-value=5e+02 Score=29.51 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=64.7
Q ss_pred hHHHHHhhchhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHhhhhhcCChhhHHHHHHHhhcCCCC---cc
Q 014744 95 SYLYLLAMGWNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLEDIEKDQREYTLDEEDQKMQDAILRREPSK---HE 171 (419)
Q Consensus 95 Sklylll~~~~i~~~F~~V~~~I~~~L~~lPl~~l~is~ev~Eqvelv~~q~r~~~~d~~d~~l~~~il~~e~~~---~d 171 (419)
.-.+-+++.-.+..++..+..-+..-++.+-+. -.|..+|++|++ +++|+|.+-..=..+++.| ..+. .+
T Consensus 179 ~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~e-k~I~~kVk~~me---K~QREyyL~EQlKaIqkEL---G~~~d~~~e 251 (782)
T COG0466 179 EEKQEILETLDVKERLEKLLDLLEKEIDLLQLE-KRIRKKVKEQME---KSQREYYLREQLKAIQKEL---GEDDDDKDE 251 (782)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh---CCCccchhH
Confidence 344556666666666666666555555433222 245666776664 4556666655555566655 2111 23
Q ss_pred HHHHHHHhhcCCCCCccchH----HHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHHh
Q 014744 172 TMVLKKTLSTSYPKMGFNEV----LQKENEKLQLELQRSQTQMDVSQCEVIQRLIDVTEA 227 (419)
Q Consensus 172 ~~~l~~~~~~~~~~L~l~s~----l~~E~~~L~~el~~~~~~~d~~~~~~i~~Li~ll~~ 227 (419)
-..++.-+++ .++..- ..+|+.+|+.+ .....+..++..-++.+-.
T Consensus 252 ~~~~~~kie~----~~~p~evk~k~~~El~kL~~m------~~~SaE~~ViRnYlDwll~ 301 (782)
T COG0466 252 VEELREKIEK----LKLPKEAKEKAEKELKKLETM------SPMSAEATVIRNYLDWLLD 301 (782)
T ss_pred HHHHHHHHhh----cCCCHHHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHHHHh
Confidence 3455555555 666664 66666666653 3344466677766666653
No 11
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=44.46 E-value=3.1e+02 Score=26.70 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=34.7
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHhccchHHHHHhhchhhhhhHHHHHHHHHHHhcccCcc
Q 014744 67 YPETREPLEQLEDALRRSYLLVNSCQDRSYLYLLAMGWNIVYQFRKAQTEIDRYLKIVPLI 127 (419)
Q Consensus 67 ~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~Sklylll~~~~i~~~F~~V~~~I~~~L~~lPl~ 127 (419)
.+.....+..+..++..+..++.+.++. --.++-.-..++..+...+.+|++.|..+|..
T Consensus 229 ~~~l~~~l~~l~~~~~~~~~~l~~~~~~-l~~~l~~l~~~~~~l~~~~~~l~~~l~~~p~~ 288 (291)
T TIGR00996 229 DDALDDALAALSGASAQVRDLLAENRPN-LPQALANLAPVLTLLVDYHPELEQLLHLLPTY 288 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhcchhHHHHHHhcchh
Confidence 3455566666666666666666655433 11123344555666666677777777776654
No 12
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=42.71 E-value=75 Score=30.33 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHHhh
Q 014744 192 LQKENEKLQLELQRSQTQMDVSQCEVIQRLIDVTEAF 228 (419)
Q Consensus 192 l~~E~~~L~~el~~~~~~~d~~~~~~i~~Li~ll~~~ 228 (419)
+..|+..|+.+++.. +-.+|+.+++++--.
T Consensus 179 Id~Ev~~lk~qi~s~-------K~qt~qw~~g~v~~~ 208 (220)
T KOG3156|consen 179 IDQEVTNLKTQIESV-------KTQTIQWLIGVVTGT 208 (220)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 999999999988643 344888888876544
No 13
>PHA02687 ORF061 late transcription factor VLTF-4; Provisional
Probab=38.81 E-value=1.1e+02 Score=28.75 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHH
Q 014744 39 KKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNS 90 (419)
Q Consensus 39 kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~ 90 (419)
=+....|-.||+-|+.+|+.+|.+ ++...|..|-.+|..++.++..
T Consensus 168 ikDlK~Ln~RVsAlSTVLeDVQAa------sIsRqFtsL~KaI~eLk~lA~~ 213 (231)
T PHA02687 168 LADFKDLTGRVKALSSVLTDVQAS------GVRRSFSGLGKALTEAAAIAAT 213 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhc
Confidence 356788999999999999999964 5678899999999999877654
No 14
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=36.25 E-value=2.5e+02 Score=33.15 Aligned_cols=109 Identities=19% Similarity=0.217 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcccCcchh--hhhhHHHHHHHHHHHhhh--h------hcCChhhHHHHHHHhh---------cCCCC-
Q 014744 110 FRKAQTEIDRYLKIVPLITL--VDNARVRERLEDIEKDQR--E------YTLDEEDQKMQDAILR---------REPSK- 169 (419)
Q Consensus 110 F~~V~~~I~~~L~~lPl~~l--~is~ev~Eqvelv~~q~r--~------~~~d~~d~~l~~~il~---------~e~~~- 169 (419)
++.+...| ++|..||-..- -||.+.||||..++.++. . .-.|+.-.+.+.+.|- .|+..
T Consensus 1042 KqnIa~AL-~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~ 1120 (1439)
T PF12252_consen 1042 KQNIAGAL-QALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKL 1120 (1439)
T ss_pred hhhHHHHH-HHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33343333 34566664421 188999999998887755 1 1123333333333322 35555
Q ss_pred ccHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHH
Q 014744 170 HETMVLKKTLSTSYPKMGFNEVLQKENEKLQLELQRSQTQMDVSQCEVIQRLIDVTE 226 (419)
Q Consensus 170 ~d~~~l~~~~~~~~~~L~l~s~l~~E~~~L~~el~~~~~~~d~~~~~~i~~Li~ll~ 226 (419)
+|.+..++.+.. -+.|++|+.-|+.|..+.....++-+.+-|+.|-.-|.
T Consensus 1121 ~~l~~ikK~ia~-------lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq 1170 (1439)
T PF12252_consen 1121 DNLDSIKKAIAN-------LNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQ 1170 (1439)
T ss_pred ccHHHHHHHHHH-------HHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHH
Confidence 677777765555 23399999999999877766555555555655544444
No 15
>PF14949 ARF7EP_C: ARF7 effector protein C-terminus
Probab=34.02 E-value=17 Score=30.76 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=16.1
Q ss_pred cCcccccCCCccchhcccchhHhH
Q 014744 300 TDLLGCCSEPLLCMKTFFYPCGTF 323 (419)
Q Consensus 300 ~gL~~C~~d~~~C~~~~~cPC~~~ 323 (419)
.+||||.+. -|.+||+||-..
T Consensus 60 ~DlCDCL~~---~C~GC~~PC~~C 80 (103)
T PF14949_consen 60 KDLCDCLDE---DCPGCHYPCPKC 80 (103)
T ss_pred CccccccCC---CCCCccccCCCC
Confidence 379999765 577889999655
No 16
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=33.21 E-value=6.7e+02 Score=27.33 Aligned_cols=48 Identities=13% Similarity=0.282 Sum_probs=42.5
Q ss_pred HhhchhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHhhh
Q 014744 100 LAMGWNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLEDIEKDQR 147 (419)
Q Consensus 100 ll~~~~i~~~F~~V~~~I~~~L~~lPl~~l~is~ev~Eqvelv~~q~r 147 (419)
.+++..+..+.+.-+..+...+..||-....+..++.+|++.|+.--+
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~ 236 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYR 236 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 558899999999999999999999999999999999999998885533
No 17
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=31.08 E-value=1.2e+02 Score=28.65 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHH
Q 014744 39 KKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLV 88 (419)
Q Consensus 39 kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv 88 (419)
-++...|-.||.-|..+|+.+|.+ ++...|..|-.++..++.|.
T Consensus 139 ~kdlK~l~~rVsavstVLeDvQAa------sv~R~fs~L~K~i~~l~~l~ 182 (200)
T PF03286_consen 139 IKDLKNLNARVSAVSTVLEDVQAA------SVSRQFSSLSKAIEELKDLA 182 (200)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh------ccchHHHHHHHHHHHHHHHH
Confidence 456788999999999999999965 44577888999999888873
No 18
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.69 E-value=1e+03 Score=28.77 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 014744 43 RQFAQHLKLIGNLLEQLKI 61 (419)
Q Consensus 43 ~~Larrv~lL~~lLeeL~~ 61 (419)
+...+-+.+...+|.++++
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~ 1605 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQE 1605 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3344444555555555543
No 19
>PF09806 CDK2AP: Cyclin-dependent kinase 2-associated protein; InterPro: IPR019187 Members of this family of proteins are cell-growth suppressors, associating with and influencing the biological activities of important cell cycle regulators in the S phase including monomeric non-phosphorylated cyclin-dependent kinase 2 (CDK2) and DNA polymerase alpha/primase. An association between mutations in the gene coding for this protein and oral cancer has been described. ; PDB: 2KW6_A.
Probab=28.77 E-value=46 Score=31.31 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhc
Q 014744 50 KLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQ 92 (419)
Q Consensus 50 ~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~ 92 (419)
.-|+.+++|+..--.|..-..+.+.++|+.-+..|+.||..|.
T Consensus 142 ~~LL~viee~g~~irpty~g~r~~~eRlkr~I~hAr~lvreCl 184 (193)
T PF09806_consen 142 AQLLAVIEEMGKDIRPTYAGSRSAMERLKRGIIHARILVRECL 184 (193)
T ss_dssp HHHHHHHHHHCCCHHHHHCT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCcccccCccHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777521112122447899999999999999999993
No 20
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=28.70 E-value=32 Score=30.69 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=10.1
Q ss_pred HhHHHHHHHhCCCCCC
Q 014744 359 CIRRKLRKTLNIAGGF 374 (419)
Q Consensus 359 ~~R~~iR~rygI~g~~ 374 (419)
.+|..||.||||+.+-
T Consensus 63 ~mRq~IRdKY~l~k~e 78 (139)
T PF05835_consen 63 KMRQHIRDKYGLKKKE 78 (139)
T ss_dssp HHHHHHHHHHT-----
T ss_pred HHHHHHHhhccccccc
Confidence 4799999999999763
No 21
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=27.47 E-value=2.5e+02 Score=23.11 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=42.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhc
Q 014744 35 ARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQ 92 (419)
Q Consensus 35 a~~~kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~ 92 (419)
...-|++=..|++++.-+.++|..|...+ ....+....+..-...-++|+.||..--
T Consensus 8 ~~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~-Vlt~ee~e~I~~~~t~~~qAr~Lld~l~ 64 (94)
T cd08329 8 LSLIRKNRMALFQHLTSVLPILDSLLSAN-VITEQEYDVIKQKTQTPLQARELIDTVL 64 (94)
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHcC-CCCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34567788899999988999999998654 4566555666555555688888887754
No 22
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=25.34 E-value=4e+02 Score=27.26 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=43.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHH
Q 014744 35 ARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNS 90 (419)
Q Consensus 35 a~~~kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~ 90 (419)
.+.+++-+..+.+..+.+..+...|+..+...+++....+++|+.-+.+++..+.+
T Consensus 31 ~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~D 86 (330)
T PF07851_consen 31 SKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFD 86 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHH
Confidence 35666666788888888888888888765556778889999999999998876544
No 23
>PHA03089 late transcription factor VLTF-4; Provisional
Probab=25.02 E-value=2.2e+02 Score=26.58 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=45.0
Q ss_pred HHHHHHHhhccHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHH
Q 014744 10 IANVAQLAGFDAVRLIGMIVKAATTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVN 89 (419)
Q Consensus 10 ~a~v~ql~g~d~~~la~~I~~aa~~a~~~kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~ 89 (419)
.+++.+.--.|-.+|-..+... =+....|..||..|..+|+.++.+. +...+..|-.++..++.|+.
T Consensus 109 ~~~~n~~d~id~SdLklat~~I-------~KdlK~i~~RVsAlsTVLeDvQAa~------i~Rqftsl~K~i~~Lk~l~~ 175 (191)
T PHA03089 109 AAEVNHEDVIDLSDLKLATENI-------IKDLKKINSRVSAVSTVLEDVQAAS------ISRQYTSLIKEIDKLKDLVN 175 (191)
T ss_pred ccccCcccccchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHH
Confidence 3444444444545544433322 3566789999999999999999654 44677888888888887544
No 24
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.91 E-value=1.3e+03 Score=28.01 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=23.9
Q ss_pred hchhhhhhHHHHHHHHHHHhcccCcchhhhhh
Q 014744 102 MGWNIVYQFRKAQTEIDRYLKIVPLITLVDNA 133 (419)
Q Consensus 102 ~~~~i~~~F~~V~~~I~~~L~~lPl~~l~is~ 133 (419)
.-.....+.+.++.+|...+..||-+...++.
T Consensus 1505 ~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~ 1536 (1758)
T KOG0994|consen 1505 ELPLTPEQIQQLTGEIQERVASLPNVDAILSR 1536 (1758)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence 33445678888899999888888877766654
No 25
>PF07165 DUF1397: Protein of unknown function (DUF1397); InterPro: IPR009832 This entry consists of several insect specific 27 kDa Haemolymph glycoprotein precursors. The function of this family is unknown [].
Probab=24.79 E-value=6e+02 Score=24.06 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHh---hHHHHhHHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHH-hcc-c
Q 014744 20 DAVRLIGMIVKAA---TTARMHKKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNS-CQD-R 94 (419)
Q Consensus 20 d~~~la~~I~~aa---~~a~~~kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~-C~~-~ 94 (419)
|+..+-.+|..+- +--.+.+|-|.++..-+.=+.++++.++.- ++++.+.-+.-+... ...||+. |.+ |
T Consensus 49 d~~~l~~eie~~~p~g~ld~vF~KyC~k~~~~~~C~~~f~~~v~~C---l~~ee~~~~~~~~~i---~~~ll~fvC~k~G 122 (213)
T PF07165_consen 49 DLTQLQQEIEEAKPTGDLDEVFNKYCPKRPQAKECFDPFTEKVKPC---LDEEEKEILDVMMNI---IPSLLDFVCYKDG 122 (213)
T ss_pred CHHHHHHHHHHcCccccHHHHHHHHhHhhHHHHHHHHHHHhhcccC---CCHHHHHHHHHHHHH---HHHHHHHHHcCCc
Confidence 7777778887766 333578999999999999999999988742 455555555444444 4455555 874 5
Q ss_pred hHHHHHhhchhhhhhHHHHHHHHHHHhcc
Q 014744 95 SYLYLLAMGWNIVYQFRKAQTEIDRYLKI 123 (419)
Q Consensus 95 Sklylll~~~~i~~~F~~V~~~I~~~L~~ 123 (419)
..+.+ +.+..-.+=|......|.++...
T Consensus 123 d~Ial-f~~~~g~eC~~~~~~~i~~C~~~ 150 (213)
T PF07165_consen 123 DRIAL-FIAEGGPECFESLKDNIQQCANK 150 (213)
T ss_pred hhhHh-hcccCcHHHHHHhhHHHHHHHHH
Confidence 56655 55556677788888888888754
No 26
>PRK14161 heat shock protein GrpE; Provisional
Probab=24.33 E-value=5.6e+02 Score=23.71 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=33.3
Q ss_pred hhchhhhhhHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHhhh
Q 014744 101 AMGWNIVYQFRKAQTEIDRYLKIVPLITLVDNARVRERLEDIEKDQR 147 (419)
Q Consensus 101 l~~~~i~~~F~~V~~~I~~~L~~lPl~~l~is~ev~Eqvelv~~q~r 147 (419)
....+++..|=.|.+.|+++|...|-..-.....+.+-|+++.+|+.
T Consensus 66 ~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi~k~l~ 112 (178)
T PRK14161 66 YAIATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKDELD 112 (178)
T ss_pred HHHHHHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHHHHHHH
Confidence 35566888888899999999988765432212446777888887765
No 27
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=21.06 E-value=5.7e+02 Score=25.91 Aligned_cols=46 Identities=26% Similarity=0.392 Sum_probs=37.9
Q ss_pred hhhhhHHHHHHHHHHHhccc-------CcchhhhhhHHHHHHHHHHHhhh-hhc
Q 014744 105 NIVYQFRKAQTEIDRYLKIV-------PLITLVDNARVRERLEDIEKDQR-EYT 150 (419)
Q Consensus 105 ~i~~~F~~V~~~I~~~L~~l-------Pl~~l~is~ev~Eqvelv~~q~r-~~~ 150 (419)
....-|..+..+|+..|..+ |+....++++-.++++.+++.+. +|.
T Consensus 152 ~~~~lf~~i~~ki~~~L~~lp~~~~~~PLl~~~L~~~Qw~~Le~i~~~L~~EY~ 205 (318)
T PF10239_consen 152 TASQLFSKIEAKIEELLSKLPPGHMGKPLLKKSLTDEQWEKLEKINQALSKEYE 205 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999885 66777889998999999998887 544
No 28
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=21.00 E-value=4.3e+02 Score=21.61 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHHHhccchHHHHHhhchhhhhhHHHHHHHHH
Q 014744 39 KKNCRQFAQHLKLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVNSCQDRSYLYLLAMGWNIVYQFRKAQTEID 118 (419)
Q Consensus 39 kk~C~~Larrv~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~~C~~~Sklylll~~~~i~~~F~~V~~~I~ 118 (419)
|.+=..|+.||..+.|+|..|...+ ..+.+-......-.-.-++++.|+..-+ ..|+.....|..+-.++.
T Consensus 4 ~~hRe~LV~rI~~v~plLD~Ll~n~-~it~E~y~~V~a~~T~qdkmRkLld~v~--------akG~~~k~~F~~iL~e~~ 74 (85)
T cd08324 4 KSNRELLVTHIRNTQCLVDNLLKND-YFSTEDAEIVCACPTQPDKVRKILDLVQ--------SKGEEVSEYFLYLLQQLA 74 (85)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhccC-CccHHHHHHHHhCCCCHHHHHHHHHHHH--------hcCchHHHHHHHHHHHHH
Confidence 4555689999999999999998643 2333322222222222233333322211 123445566777766665
Q ss_pred HHh
Q 014744 119 RYL 121 (419)
Q Consensus 119 ~~L 121 (419)
++-
T Consensus 75 ~~y 77 (85)
T cd08324 75 DAY 77 (85)
T ss_pred Hhh
Confidence 544
No 29
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=20.62 E-value=1.4e+02 Score=27.95 Aligned_cols=36 Identities=25% Similarity=0.160 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhccCCChhhhhHHHHHHHHHHHHHHHHH
Q 014744 50 KLIGNLLEQLKISELKKYPETREPLEQLEDALRRSYLLVN 89 (419)
Q Consensus 50 ~lL~~lLeeL~~~~~~~~~~~~~~L~~L~~aL~~Ak~Lv~ 89 (419)
++|.|+|++++..... ....-+.|..||..|+.||.
T Consensus 146 kll~p~L~~~~~~~~~----Led~Pe~l~~Av~~A~sLV~ 181 (183)
T PF12617_consen 146 KLLQPILEEAESRGGS----LEDWPELLWQAVSLAHSLVS 181 (183)
T ss_pred HHHHHHHHHHHHcCCc----hhhChHHHHHHHHHHHHHhc
Confidence 3689999999864422 34444579999999999984
Done!