Query 014745
Match_columns 419
No_of_seqs 253 out of 1518
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14655 mraY phospho-N-acetyl 100.0 1E-69 2.2E-74 537.8 26.8 291 97-414 2-299 (304)
2 PRK14654 mraY phospho-N-acetyl 100.0 2.9E-65 6.3E-70 506.4 31.9 295 97-414 3-297 (302)
3 TIGR00445 mraY phospho-N-acety 100.0 1.9E-60 4.1E-65 476.2 30.3 298 105-413 3-316 (321)
4 PRK00108 mraY phospho-N-acetyl 100.0 2.2E-59 4.7E-64 472.5 35.5 313 90-413 9-339 (344)
5 COG0472 Rfe UDP-N-acetylmuramy 100.0 1.1E-57 2.4E-62 455.7 30.1 293 95-414 8-312 (319)
6 cd06852 GT_MraY Phospho-N-acet 100.0 1.1E-52 2.4E-57 413.3 30.9 276 128-413 2-279 (280)
7 TIGR02380 ECA_wecA undecapreny 100.0 1.3E-51 2.9E-56 416.0 32.7 285 103-413 7-307 (346)
8 PRK15119 undecaprenyl-phosphat 100.0 1.9E-50 4.1E-55 410.1 32.5 284 104-413 14-311 (365)
9 cd06854 GT_WbpL_WbcO_like The 100.0 1.7E-49 3.7E-54 385.4 24.2 241 125-396 3-253 (253)
10 cd06853 GT_WecA_like This subf 100.0 1.2E-46 2.7E-51 364.5 24.4 236 130-391 1-249 (249)
11 cd06855 GT_GPT_euk UDP-GlcNAc: 100.0 1.7E-43 3.7E-48 348.2 26.3 238 129-383 18-279 (283)
12 cd06856 GT_GPT_archaea UDP-Glc 100.0 3E-42 6.6E-47 339.1 28.2 261 131-410 7-279 (280)
13 cd06851 GT_GPT_like This famil 100.0 6.8E-41 1.5E-45 319.7 23.0 207 130-354 6-222 (223)
14 cd06912 GT_MraY_like This subf 100.0 4.9E-40 1.1E-44 307.4 20.5 189 128-332 2-192 (193)
15 cd06499 GT_MraY-like Glycosylt 100.0 5.8E-39 1.3E-43 298.3 19.7 182 136-332 1-184 (185)
16 PF00953 Glycos_transf_4: Glyc 100.0 2E-32 4.4E-37 248.5 17.2 153 167-337 4-159 (159)
17 KOG2788 Glycosyltransferase [C 99.7 9.3E-18 2E-22 165.2 10.4 180 168-361 105-303 (418)
18 PF10555 MraY_sig1: Phospho-N- 96.7 0.00038 8.2E-09 37.4 -0.2 12 134-145 1-12 (13)
19 COG4589 Predicted CDP-diglycer 52.7 1.2E+02 0.0025 30.3 9.5 33 168-200 241-273 (303)
20 PRK12287 tqsA pheromone autoin 42.8 1.2E+02 0.0025 30.9 8.4 54 49-117 1-54 (344)
21 PF06072 Herpes_US9: Alphaherp 33.0 1.5E+02 0.0033 22.9 5.5 7 43-49 16-22 (60)
22 PF15259 GTSE1_N: G-2 and S-ph 30.6 29 0.00063 31.3 1.5 55 4-58 20-99 (141)
23 PRK10197 gamma-aminobutyrate t 27.9 7.1E+02 0.015 26.0 13.1 8 177-184 423-431 (446)
24 PRK10238 aromatic amino acid t 25.4 8E+02 0.017 25.7 12.6 17 61-77 335-351 (456)
25 PF06942 GlpM: GlpM protein; 25.0 4.5E+02 0.0098 22.7 8.7 46 34-79 33-80 (107)
26 PF02313 Fumarate_red_D: Fumar 24.0 97 0.0021 27.2 3.5 35 380-414 80-115 (118)
27 PF01769 MgtE: Divalent cation 21.9 5.2E+02 0.011 22.3 8.5 30 89-118 79-108 (135)
28 COG3104 PTR2 Dipeptide/tripept 20.9 4.7E+02 0.01 28.5 8.6 73 61-147 165-237 (498)
No 1
>PRK14655 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=1e-69 Score=537.78 Aligned_cols=291 Identities=29% Similarity=0.392 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCccccchhHHHHHHHHHHH---HhhcchhhHHHHHHHHHH
Q 014745 97 FISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIA---TVGFSSLQVSGASAATLA 173 (419)
Q Consensus 97 ~ls~lis~~~~~~~ip~l~~~~~~~~ir~~~~~r~~~k~~tP~mGGl~ii~~~i~~~~l---~~~~~~~~i~~ll~~~l~ 173 (419)
+.|+++|.++++.++++++|.+..|.+|+|+|++|.||++||||||+++++..++...+ +...++.+...++.+++.
T Consensus 2 ~~s~~ls~~~~p~~i~~l~~~~~~q~ir~dgP~~~~~k~~tPtmGGi~ii~~~li~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (304)
T PRK14655 2 VVAALLSWFLVGLFIRYSKARGWGQPVRQDGPQTHLAKEGTPTAGGVAFVLALALVFFPLYAFGHAGGERELLIMLAALA 81 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcccccCcccccCCCCCCCcChHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 35778888999999999999999999999999999999999999999998643333332 111222223344566778
Q ss_pred HHHHHHHhhhhhhhhcC----CCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHH
Q 014745 174 IALIGLIDDVICLVKNH----SSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTS 249 (419)
Q Consensus 174 ~~~iG~iDD~~~~~~~~----~~gLs~~~Kll~q~~~a~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i 249 (419)
++++|++||+.|+++|+ |+|++++.|+.+|++++..+..+... ......+|+ ..+++++++++
T Consensus 82 ~~~iG~~DD~~kl~~~~~~~~~~gL~~~~Kl~~Q~l~a~~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~ 148 (304)
T PRK14655 82 MGVVGGIDDFLKIRSRMRGHGKKELLAREKFPLQFLVALVFAGFAAP------LASHELLPS-------LGPVFDVLLIA 148 (304)
T ss_pred HHHHHHHhhhhhhhccccccccCCCCHHHHHHHHHHHHHHHHHHHhc------ccccccccc-------hhhHHHHHHHH
Confidence 89999999999999887 89999999999999998776433211 011111221 14578899999
Q ss_pred HHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHH
Q 014745 250 FTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAVLPICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGAL 329 (419)
Q Consensus 250 ~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l~i~~~~~~~~l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~~l 329 (419)
+++++++||+|+|||+||||+|++++++.+++. ...++++++|||+||||||+||||||||||||+++|+++
T Consensus 149 ~~iv~~~NAvNl~DGLDGLa~g~~~i~~~~l~~--------~~~~~~~l~Ga~lGFL~fN~~PAkIFMGDtGSl~LG~~l 220 (304)
T PRK14655 149 LVMVGSVNAFNFTDGLDGLLAGVAMIVLLPLLA--------VSPVSALLVAVLLGFLWFNAHPARVFMGDMGSHAIGAVA 220 (304)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhcCcccEEeeccchHHHHHHH
Confidence 999999999999999999999999998887653 345788999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCCCCCCCChhhHHHhhcCCChhHHHHHHHHHHHHHHH
Q 014745 330 ASMAACTGMFFPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFHHHLELCGLKEPMIVAGAYVISSVLAL 409 (419)
Q Consensus 330 a~~ai~~~~~~~l~i~~~if~ie~lsvilqv~~fk~~rr~~g~g~~if~~~plHh~l~~~G~se~~iv~~~~~i~~lla~ 409 (419)
|.+++..++|+.+++++++|++|++||++||.|||.+ |||+|+|+|+|||+|++||+|.|+|.+||+++.++++
T Consensus 221 a~~ai~~~~~~~l~i~g~ifv~e~lSviiQv~~fk~~------gkrif~maPiHhHfe~~Gw~e~~iv~~fwii~~~~~~ 294 (304)
T PRK14655 221 AGAYILYADVWLLPIAAIIPVVAVLSVVIQVASFRLR------GKRVFRMSPIQHHFELSGWPETHVTLRFWVVTAIATA 294 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhheeEEEEEEEEc------CeeeccCCchHHHHHhcCCCcceehhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999963 5899999999999999999999999999999999999
Q ss_pred HHHHH
Q 014745 410 FAGYV 414 (419)
Q Consensus 410 ~~~~~ 414 (419)
+++|+
T Consensus 295 ~~~~~ 299 (304)
T PRK14655 295 AVWWL 299 (304)
T ss_pred HHHHH
Confidence 99986
No 2
>PRK14654 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=2.9e-65 Score=506.39 Aligned_cols=295 Identities=33% Similarity=0.448 Sum_probs=242.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 014745 97 FISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIAL 176 (419)
Q Consensus 97 ~ls~lis~~~~~~~ip~l~~~~~~~~ir~~~~~r~~~k~~tP~mGGl~ii~~~i~~~~l~~~~~~~~i~~ll~~~l~~~~ 176 (419)
.+|+++|.+.++.++|+++|.+..|.+|+++|++|.+|++||||||+++++++++.+.+ . .+....+.+++.+++
T Consensus 3 ~~sf~~s~~~~p~~i~~~~k~~~~~~ir~~g~~~H~~k~~tP~mGGi~i~~~~~~~~~~-~----~~~~~~l~~~~~~~~ 77 (302)
T PRK14654 3 AANFLLNLFLYPILIKLFRRRRIGQYIRKEGPDLHGYKEGTPTMGGILFVLTGFLFGMI-S----KTNTMVLLGMFLFFL 77 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCcCCcHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999998888889999999999987644433222 1 111233446677889
Q ss_pred HHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHh
Q 014745 177 IGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMG 256 (419)
Q Consensus 177 iG~iDD~~~~~~~~~~gLs~~~Kll~q~~~a~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i~~iv~~~ 256 (419)
+|++||+.|+.+|+++|++++.|+++|++++.++..+... .. .+|+.. ..+++++++++++++++++++
T Consensus 78 iG~lDD~~~l~~~~~~gL~~~~Kl~~q~~~a~~~~~~~~~-~~--------~~~~~~--~~~~lg~~~~~~~~~~iv~~~ 146 (302)
T PRK14654 78 IGFLDDFLSVARKDSTGLKTYQKALLQTLAAFIMLLLIRP-ET--------NVDFFG--FTIEMGKWYYLFALLVIVGSS 146 (302)
T ss_pred HHHHhccHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHhh-cc--------cccccc--ccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876433211 11 122211 123456778899999999999
Q ss_pred hhhhcccCCCchhhHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhh
Q 014745 257 NGVNLTDGLDGLAGGTAALAFIGMSIAVLPICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACT 336 (419)
Q Consensus 257 Na~Nl~DGlDGLA~G~s~I~~~~l~i~~~~~~~~l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~~la~~ai~~ 336 (419)
||+|++||+||||+|++++....+.. +..++.+....+++++|||+|||+||+||||||||||||+++|+.+|++++..
T Consensus 147 NavNl~DGlDGLa~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~gallGFL~~N~~PAkIFMGDtGSl~LG~~la~~~i~~ 225 (302)
T PRK14654 147 NAMNLTDGLDGLAGWIYVSGSIPYWF-FLKERGVSEDILLILGAGVLAFLVFNSKPAKIFMGDTGSITLGGVLGTVSVLT 225 (302)
T ss_pred HHhHHhhccchHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHhhcCChhheeccchhhHHHHHHHHHHHHHH
Confidence 99999999999999987655433221 22334444556889999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCCCCCCCChhhHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 014745 337 GMFFPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFHHHLELCGLKEPMIVAGAYVISSVLALFAGYV 414 (419)
Q Consensus 337 ~~~~~l~i~~~if~ie~lsvilqv~~fk~~rr~~g~g~~if~~~plHh~l~~~G~se~~iv~~~~~i~~lla~~~~~~ 414 (419)
+.|+.+++++++|+.|++||++||.+||.+ |||+|+|+|+|||+|++||||+|+|.++|+++.+++++++-.
T Consensus 226 ~~~~~~~i~~~~~v~e~lsviiQv~~~~~~------~rrif~~~p~Hhh~e~~Gw~e~~iv~~f~~i~~~~~~~~~~~ 297 (302)
T PRK14654 226 KTEFYLVLFFLIPVIETLSVILQVGSFKIF------KRRIFRMSPLHHHFELIGWSEEKIVAVFTVFNLISSLVVLEI 297 (302)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CceeeecCccHHHHHHcCCCcceehHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999975 588999999999999999999999999999999999888643
No 3
>TIGR00445 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase. Involved in peptidoglycan biosynthesis, the enzyme catalyzes the first of the lipid cycle reactions. Also known as Muramoyl-Pentapeptide Transferase (murX).
Probab=100.00 E-value=1.9e-60 Score=476.25 Aligned_cols=298 Identities=41% Similarity=0.595 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhhhh
Q 014745 105 CAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIALIGLIDDVI 184 (419)
Q Consensus 105 ~~~~~~ip~l~~~~~~~~ir~~~~~r~~~k~~tP~mGGl~ii~~~i~~~~l~~~~~~~~i~~ll~~~l~~~~iG~iDD~~ 184 (419)
++++.++++.+|.+..+..|+++++||.||++|||+||++++...++...++....+.+...++.+++.++++|++||+.
T Consensus 3 ~~~p~~i~~~~r~~~~~~~~~~~~~~h~~~~~tP~~GGiai~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~DD~~ 82 (321)
T TIGR00445 3 LLGPKVIPMLKKLKAGQVIRSDGPKSHLKKKGTPTMGGIMIVFAIIVSTVLWAQLGNPYVLLVLFVLLGYGFIGFVDDYR 82 (321)
T ss_pred EeHHHHHHHHHHhCCCCCcccccchhccCCCCCCCcChHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhHH
Confidence 45788999999999888888888889999999999999998854333222222222333444455566678999999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccC
Q 014745 185 CLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDG 264 (419)
Q Consensus 185 ~~~~~~~~gLs~~~Kll~q~~~a~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i~~iv~~~Na~Nl~DG 264 (419)
|.++|+++|++++.|+++|+++++++..+....... .....|+.. ....++++++++++++++++++||+|++||
T Consensus 83 ~~~~~~~~gl~~~~rl~~q~~~a~~~~~~~~~~~~~----~~~~~p~~~-~~~~~lg~~~~~~~~~~iv~~~Na~N~~DG 157 (321)
T TIGR00445 83 KIKRKSNKGLTAKQKLFGQIIIALIFCTWLYYYGPD----TFIYIPFIK-DFMFDLGLFYILLAYFVLVGTSNAVNLTDG 157 (321)
T ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC----ceEeccccc-cccccccHHHHHHHHHHHHHHhhhhhhhcc
Confidence 999999999999999999999987764332111100 011122211 112356788899999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHhc-ccC---------------hHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHH
Q 014745 265 LDGLAGGTAALAFIGMSIAVL-PIC---------------SELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGA 328 (419)
Q Consensus 265 lDGLA~G~s~I~~~~l~i~~~-~~~---------------~~l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~~ 328 (419)
+||||+|++++++.++++... .++ .+...++++++|||+|||+||+|||||||||+||+++|+.
T Consensus 158 lDGLa~g~~~i~~~~l~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~l~ga~lgFL~fN~~pAkIFMGD~GS~~LG~~ 237 (321)
T TIGR00445 158 LDGLAIGPSAIAFGALAILAWATGNANFAKYLHIPYLKDSGELVIFCTALVGASLGFLWFNAYPAKVFMGDTGSLALGGA 237 (321)
T ss_pred cchHhHHHHHHHHHHHHHHHHHccchhHhhhhcccccCcchHHHHHHHHHHHHHHHHHHhhCChhheeccchHHHHHHHH
Confidence 999999999999988876532 222 2557788999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCCCCCCCChhhHHHhhcCCChhHHHHHHHHHHHHHH
Q 014745 329 LASMAACTGMFFPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFHHHLELCGLKEPMIVAGAYVISSVLA 408 (419)
Q Consensus 329 la~~ai~~~~~~~l~i~~~if~ie~lsvilqv~~fk~~rr~~g~g~~if~~~plHh~l~~~G~se~~iv~~~~~i~~lla 408 (419)
+|++++..+.++..++++++|++|++++++|+.+.| . +|||+|+++|+|||+++.||||+|++.++|.++.+++
T Consensus 238 la~~~i~~~~~~~~l~~~~~~i~D~~~vi~~v~~r~-----~-~g~~~f~~~~~Hh~l~~~G~s~~~v~~~~~~i~~~~~ 311 (321)
T TIGR00445 238 LGAVAILTKNEILLVIMGGVFVIETLSVILQVGSYK-----T-TKKRIFKMAPIHHHFELKGWSEPRVVVRFWIISLLLA 311 (321)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH-----h-cCCCCCCCCchHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence 999999988888888889999999999999876433 2 4799999999999999999999999999999999999
Q ss_pred HHHHH
Q 014745 409 LFAGY 413 (419)
Q Consensus 409 ~~~~~ 413 (419)
+++++
T Consensus 312 ~~~~~ 316 (321)
T TIGR00445 312 LVALA 316 (321)
T ss_pred HHHHH
Confidence 98876
No 4
>PRK00108 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=2.2e-59 Score=472.55 Aligned_cols=313 Identities=39% Similarity=0.610 Sum_probs=249.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCccccchhHHHHHHHHHHHH-hhcchhhHHHHH
Q 014745 90 FYLTRPFFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIAT-VGFSSLQVSGAS 168 (419)
Q Consensus 90 ~~~~~~~~ls~lis~~~~~~~ip~l~~~~~~~~ir~~~~~r~~~k~~tP~mGGl~ii~~~i~~~~l~-~~~~~~~i~~ll 168 (419)
+++..++++++++|.++++.++++.+|.+..+..++++|+.|+||++||++||++++.. +..+... ....+.+.+.++
T Consensus 9 ~~~~~~~~~af~is~~~~p~~i~~~~~~~~~~~~~~~~p~~h~h~~~tP~~GGi~i~~~-~~~~~~~~~~~~~~~~~~~l 87 (344)
T PRK00108 9 FRALLALLTALLISLILGPRFIRFLRKLKFGQPIREDGPQSHLKKAGTPTMGGILILLA-IVISTLLWADLSNPYVWLVL 87 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccCCCCCCCcccHHHHHH-HHHHHHHHHhccchHHHHHH
Confidence 56778888899999999999999998887655555666666678999999999998753 3333332 222233444445
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhh-hHHHHH
Q 014745 169 AATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLG-KFYLLL 247 (419)
Q Consensus 169 ~~~l~~~~iG~iDD~~~~~~~~~~gLs~~~Kll~q~~~a~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg-~l~~~l 247 (419)
.+++.++++|++||+.|.++|+++|++++.|++.|++++.++..+.....+.. .....|+.. ...+.++ ++++++
T Consensus 88 ~~~~~~~~vG~~DD~~~~~~~~~~~l~~~~kl~~q~~aa~~~~~~~~~~g~~~---~~~~~p~~~-~~~i~lg~~~~~~~ 163 (344)
T PRK00108 88 LVTLGFGLIGFLDDYLKVVKKNNLGLSARQKLLLQILIALIFALLLYLLGSTS---TSLTIPFFK-DLSLDLGVILYIPF 163 (344)
T ss_pred HHHHHHHHHHhHHhhHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCC---ceEEecCcc-ccccccchHHHHHH
Confidence 55566789999999999999999999999999999999987655431000100 001123211 1123456 678999
Q ss_pred HHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHhc-cc---------------ChHHHHHHHHHHHHHHHHhhcCcc
Q 014745 248 TSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAVL-PI---------------CSELSIFGASMAGACVGFLLHNRY 311 (419)
Q Consensus 248 ~i~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l~i~~~-~~---------------~~~l~i~~~~l~GallGFL~~N~~ 311 (419)
+++++++++||+|++||+||||+|++++++.++++... .+ +.+...++++++|||+|||+||+|
T Consensus 164 t~~~iv~~~Na~N~iDGiDGLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gallGFL~~N~~ 243 (344)
T PRK00108 164 AYFVIVGTSNAVNLTDGLDGLAIGPSVIVFAALGIIAYLQGNAVFANYLHIPYIPGAGELAIFCAALVGACLGFLWFNAY 243 (344)
T ss_pred HHHHHHHHhhhhhhccCchhHHHHHHHHHHHHHHHHHHHcCchhhhhhhcccccCCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999988876532 22 337788899999999999999999
Q ss_pred CCccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCCCCCCCChhhHHHhhcCC
Q 014745 312 RASVFMGDTGSLALGGALASMAACTGMFFPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFHHHLELCGL 391 (419)
Q Consensus 312 PAkIFMGDtGSl~LG~~la~~ai~~~~~~~l~i~~~if~ie~lsvilqv~~fk~~rr~~g~g~~if~~~plHh~l~~~G~ 391 (419)
||||||||+||+++|+.+|++++..+.++..++++++|++|++++++|+.++|. +||++|+++|+|||+++.|+
T Consensus 244 pAkIFMGD~GS~~LG~~la~~~i~~~~~~~~~~~~~~~l~d~~~~~l~~~~~R~------~g~~~f~~~hlHH~l~~~G~ 317 (344)
T PRK00108 244 PAQVFMGDTGSLALGGALAAIAVLLRQELLLLIIGGVFVIETLSVILQVGSFKL------TGKRIFRMAPIHHHFELKGW 317 (344)
T ss_pred cceEEeechHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCCCCHHHHHHHcCC
Confidence 999999999999999999999998877777778889999999999999876554 26999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH
Q 014745 392 KEPMIVAGAYVISSVLALFAGY 413 (419)
Q Consensus 392 se~~iv~~~~~i~~lla~~~~~ 413 (419)
||+|+|.++|.++.+++.+++.
T Consensus 318 s~~~vv~~~~~i~~~~~~~~~~ 339 (344)
T PRK00108 318 SETKVVVRFWIITLILALIGLA 339 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888765
No 5
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-57 Score=455.66 Aligned_cols=293 Identities=37% Similarity=0.524 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCccccchhHHHHHHHHHHHH-hhc-chhhHHHHHHHHH
Q 014745 95 PFFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIAT-VGF-SSLQVSGASAATL 172 (419)
Q Consensus 95 ~~~ls~lis~~~~~~~ip~l~~~~~~~~ir~~~~~r~~~k~~tP~mGGl~ii~~~i~~~~l~-~~~-~~~~i~~ll~~~l 172 (419)
.+++++++|+++++.++++++|.+..+ .|+|+| |.||++||||||++++.. +.++.+. ... .+.+.+..+.++.
T Consensus 8 ~~i~a~~~s~~~~p~~~~~~~~~~~~~-~~~~~~--k~H~~~tP~mGGl~I~~~-~~~~~~l~~~~~~~~~~~~~l~~~~ 83 (319)
T COG0472 8 ALIISFVISLILTPILIKFLRKLGLGD-IPEDGP--KSHKKGTPTMGGLAILLS-ILLASLLAANLLTNPYVWLVLLGLL 83 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc-CCCccc--cccCCCCCCcchHHHHHH-HHHHHHHHHHhccchHHHHHHHHHH
Confidence 778899999999999999999998877 555554 566779999999998864 4444333 332 4445566677778
Q ss_pred HHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHH-HHHHhh--cCCCCCCCccceeeecccccccchhh-hHHHHHH
Q 014745 173 AIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTW-FSFWLD--ATSIPSPYGMKMLVPLPAPLGLLFLG-KFYLLLT 248 (419)
Q Consensus 173 ~~~~iG~iDD~~~~~~~~~~gLs~~~Kll~q~~~a~~-~~~~~~--~~~i~~~~~~~~~i~~~~~~~~~~lg-~l~~~l~ 248 (419)
.++.+|++||+.| +++|.|.+.|...+.. +..... ......|+ ..|+ ....+ +++++++
T Consensus 84 ~~~~iG~lDD~~~--------l~~~~r~l~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~ 146 (319)
T COG0472 84 GFGLIGFLDDRLK--------LSPKIRGLIQKLKALLLIIALGELPIKFLDIPL----GIPF-----FKLPGPLLFILFA 146 (319)
T ss_pred HHHHHHHHHhHHH--------hhHHhhhHHHHHHHHHHHHHHHHHHHHhccCcc----cccH-----HHHHHHHHHHHHH
Confidence 8899999999997 5666666666665542 111110 11111111 1111 11223 6889999
Q ss_pred HHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHH-hcccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHH
Q 014745 249 SFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIA-VLPICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGG 327 (419)
Q Consensus 249 i~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l~i~-~~~~~~~l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~ 327 (419)
++++++++||+|++||+||||+|.+++++.++++. +..++.+.+++|++++|||+||||||+||||||||||||+++|+
T Consensus 147 ~~~ivg~sNAvNl~DGlDGLa~g~~~i~~~~~~~i~~~~~~~~~~~~~~al~ga~LGFL~~N~~PAkIFmGDtGSl~LG~ 226 (319)
T COG0472 147 VFAIVGASNAVNLTDGLDGLAAGLSAIALLALALIALLQGLGELALICAALAGACLGFLWFNFYPAKIFMGDTGSLALGA 226 (319)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcCChhhhcCCchhhHHHHH
Confidence 99999999999999999999999999999998865 33567889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHhhhheeeccCCCCCCCCCChhhHHHhhcC---CChhHHHHHHHH
Q 014745 328 ALASMAACTGMFFPLFVSSG--IFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFHHHLELCG---LKEPMIVAGAYV 402 (419)
Q Consensus 328 ~la~~ai~~~~~~~l~i~~~--if~ie~lsvilqv~~fk~~rr~~g~g~~if~~~plHh~l~~~G---~se~~iv~~~~~ 402 (419)
++|++++..++|.++.+..+ +|++|++++++|+.++|. |+. +++ ++.|+|||+++.| |+|+|+|.++|+
T Consensus 227 ~la~iail~~~~~~l~~~~~~~v~v~et~~vil~r~~~~~-~~~----~~~-~~~~~HH~~~~~g~~~~~e~~vv~~~w~ 300 (319)
T COG0472 227 ALAAIALLLKQEILLAIIGPLGVPVIETLSVILRRLSFKL-KPI----RLP-DMAHLHHHLELKGLSEWSERQVVLRFWL 300 (319)
T ss_pred HHHHHHHHHhCchhhhhhhhhhHHHHHHHHHHHHHHHhcc-CCC----CCc-CCCCchHHHHHcCCccCccceehHHHHH
Confidence 99999999999988766677 999999999999877664 221 122 8899999999999 999999999999
Q ss_pred HHHHHHHHHHHH
Q 014745 403 ISSVLALFAGYV 414 (419)
Q Consensus 403 i~~lla~~~~~~ 414 (419)
++.++++++++.
T Consensus 301 i~~i~~~i~l~~ 312 (319)
T COG0472 301 ISLILALIALLL 312 (319)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 6
>cd06852 GT_MraY Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.
Probab=100.00 E-value=1.1e-52 Score=413.29 Aligned_cols=276 Identities=41% Similarity=0.643 Sum_probs=218.5
Q ss_pred CCCCCCCCCCccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHH
Q 014745 128 PARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVG 207 (419)
Q Consensus 128 ~~r~~~k~~tP~mGGl~ii~~~i~~~~l~~~~~~~~i~~ll~~~l~~~~iG~iDD~~~~~~~~~~gLs~~~Kll~q~~~a 207 (419)
+.+|.||++||++||+++++..++...++....+.+...++.+.+.++++|++||+.++++|+++|+|++.|++.|++++
T Consensus 2 ~~~~~h~~~~P~~GGiai~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vG~~DD~~~l~~~~~~~l~~~~rL~~q~~~a 81 (280)
T cd06852 2 PKSHLKKAGTPTMGGILFILAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQFLIA 81 (280)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhHHHhhHHHhccCCCCCCHHHHHHHHHHHH
Confidence 35788999999999999875433322222222223333344555667799999999999999999999999999999998
Q ss_pred HHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHhc-c
Q 014745 208 TWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAVL-P 286 (419)
Q Consensus 208 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l~i~~~-~ 286 (419)
..+..+......... ....|++ ..+..++++++++++++++++++||+|++||+||+|+|++++++.++++... .
T Consensus 82 ~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~l~~~~~~l~v~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l~~~~~~~ 157 (280)
T cd06852 82 IVFALLLYYFNGSGT---LITLPFF-KNGLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAIIAYLA 157 (280)
T ss_pred HHHHHHHHHhccccc---ceecccc-ccccccchHHHHHHHHHHHHHHhhHhhhccCchhHHHHHHHHHHHHHHHHHHHh
Confidence 877655421111000 0001111 1234567888999999999999999999999999999999999888876543 3
Q ss_pred cChH-HHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014745 287 ICSE-LSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACTGMFFPLFVSSGIFVVEASSVIMQVLYFKI 365 (419)
Q Consensus 287 ~~~~-l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~~la~~ai~~~~~~~l~i~~~if~ie~lsvilqv~~fk~ 365 (419)
++.+ ...++++++||++|||+||+||||+||||+||+++|+++|++++..++++..+++.++|++|++.+++|+.+.
T Consensus 158 ~~~~~~~~~~~~l~ga~lgFL~~N~~pAkIFmGD~GS~~lG~~la~~~i~~~~~~~~~i~~~~~l~d~~~~~~~~~~~-- 235 (280)
T cd06852 158 GNAVFLAVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQELLLLIIGGVFVIEALSVILQVGSF-- 235 (280)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHhcCcceEEeechHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 5566 7778899999999999999999999999999999999999999988777777788889999999999875433
Q ss_pred eeeccCCCCCCCCCChhhHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 014745 366 TKHLLGGGRRLFRMAPFHHHLELCGLKEPMIVAGAYVISSVLALFAGY 413 (419)
Q Consensus 366 ~rr~~g~g~~if~~~plHh~l~~~G~se~~iv~~~~~i~~lla~~~~~ 413 (419)
|.+ ||++|+++|+||++++.|+||+|++..+|.++.++++++++
T Consensus 236 --r~~--g~~~f~~~h~hh~l~~~g~s~~~v~~~~~~i~~~~~~~~~~ 279 (280)
T cd06852 236 --KLT--GKRIFKMAPLHHHFELKGWSETKVVVRFWIISLILALIGLL 279 (280)
T ss_pred --HHc--CCCCCCCCCHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHh
Confidence 332 78999999999999999999999999999999999988876
No 7
>TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA (see ref ) is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA.
Probab=100.00 E-value=1.3e-51 Score=415.99 Aligned_cols=285 Identities=20% Similarity=0.264 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhh
Q 014745 103 VSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIALIGLIDD 182 (419)
Q Consensus 103 s~~~~~~~ip~l~~~~~~~~ir~~~~~r~~~k~~tP~mGGl~ii~~~i~~~~l~~~~~~~~i~~ll~~~l~~~~iG~iDD 182 (419)
+++.+...+|.+++...+...-|.+++||.|+++|||+||++++.. +..+.......+......+.+...+.++|++||
T Consensus 7 ~~~~s~~~~~~~~~~a~r~~lvD~P~~Rk~H~~~~P~~GGiai~~~-~~~~~~~~~~~~~~~~~~l~~~~li~~iG~~DD 85 (346)
T TIGR02380 7 IFLSSFAFLFLMRKVAKIVGLVDKPNARKRHQGFIPLVGGISIFLT-LCIYLFLHPALIPHYSLYLFCATILVVIGIIDD 85 (346)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCCcCcHHHHHH-HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhh
Confidence 3334445556666666555555666689999999999999998753 333333222122222233344455678999999
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcc
Q 014745 183 VICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLT 262 (419)
Q Consensus 183 ~~~~~~~~~~gLs~~~Kll~q~~~a~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i~~iv~~~Na~Nl~ 262 (419)
++ ++|++.|++.|++++.++..+.+. .+.+ .+ .++. .+.+.+++++++++++++++++||+|++
T Consensus 86 ~~--------~Ls~~~rl~~q~~aa~~~~~~~~~-~i~~-~~----~~~~--~~~l~l~~~~~~~t~~~iv~~~Na~N~i 149 (346)
T TIGR02380 86 RF--------DISVKIRLAIQAAVSIVMIQFGNI-YLHS-LG----NIFG--PKELTLGLFGYIITIFAVIGAINAFNMI 149 (346)
T ss_pred cc--------CCCHHHHHHHHHHHHHHHHHHccc-chhh-cc----cccc--cccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 97 699999999999999776544321 1111 00 0110 1233557888999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHHHHHhhcCcc-----CCccccCchhHHHHHHHHHHHHHhh
Q 014745 263 DGLDGLAGGTAALAFIGMSIAVL-PICSELSIFGASMAGACVGFLLHNRY-----RASVFMGDTGSLALGGALASMAACT 336 (419)
Q Consensus 263 DGlDGLA~G~s~I~~~~l~i~~~-~~~~~l~i~~~~l~GallGFL~~N~~-----PAkIFMGDtGSl~LG~~la~~ai~~ 336 (419)
||+||||+|++++++.++++... .++.+...++++++||++|||+||+| ||||||||+||+++|+.+|+.++..
T Consensus 150 DGiDGLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~~l~ga~lgFL~~N~~~~~~~pAkIFMGD~GS~~LGf~la~~~i~~ 229 (346)
T TIGR02380 150 DGIDGLLGGLSCVSFAALGYLFWLDGQVELAYWCFALIVAILPYLMLNLGIPLGRKFKVFMGDAGSTFIGFTVIWLLLLA 229 (346)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEeccchhhHHHHHHHHHHHHHH
Confidence 99999999999999988876543 45667778889999999999999997 8999999999999999999988865
Q ss_pred hhh--------HHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCCCCCCCC--hhhHHHhhcCCChhHHHHHHHHHHHH
Q 014745 337 GMF--------FPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMA--PFHHHLELCGLKEPMIVAGAYVISSV 406 (419)
Q Consensus 337 ~~~--------~~l~i~~~if~ie~lsvilqv~~fk~~rr~~g~g~~if~~~--plHh~l~~~G~se~~iv~~~~~i~~l 406 (419)
.++ +..+++.++|++|++++++ ||.. +||++|++| |+||++++.|+||+|++..+|.++++
T Consensus 230 ~~~~~~~~~~~~~~l~~l~~Pl~D~~~~i~--------rR~~-~g~~~f~adr~Hlhh~L~~~G~s~~~~~~~~~~~~~~ 300 (346)
T TIGR02380 230 TQGESSPSMRPVTALWLIALPLMDMAAIML--------RRIR-KGDSPFKPDRQHLHHILQRLGLTSRQSLFVICGFAAL 300 (346)
T ss_pred HccccccchhHHHHHHHHHHHHHHHHHHHH--------HHHH-CCCCCCCCCCccHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 321 1223567789999999997 5554 689999985 79999999999999999999999998
Q ss_pred HHHHHHH
Q 014745 407 LALFAGY 413 (419)
Q Consensus 407 la~~~~~ 413 (419)
++++++.
T Consensus 301 ~~~~~~~ 307 (346)
T TIGR02380 301 FAAIGIW 307 (346)
T ss_pred HHHHHHH
Confidence 8888765
No 8
>PRK15119 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Provisional
Probab=100.00 E-value=1.9e-50 Score=410.07 Aligned_cols=284 Identities=21% Similarity=0.277 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhhh
Q 014745 104 SCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIALIGLIDDV 183 (419)
Q Consensus 104 ~~~~~~~ip~l~~~~~~~~ir~~~~~r~~~k~~tP~mGGl~ii~~~i~~~~l~~~~~~~~i~~ll~~~l~~~~iG~iDD~ 183 (419)
++++...+|.+++...+....|.+++||.|+++||++||++++.. +..+..+......+....+.+...+.++|++||+
T Consensus 14 ~~~s~~l~~~~~~~a~r~gl~D~P~~Rk~H~~~~P~~GGiai~~~-~~~~~~~~~~~~~~~~~~l~~~~ll~~iG~~DD~ 92 (365)
T PRK15119 14 FLFSTLFLFFARKVAKKIGLVDKPNYRKRHQGLIPLVGGISVYAG-ICFTFGITDYYIPHASLYLACAGVLVFVGALDDR 92 (365)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCcCCCCCCCCcCcHHHHHH-HHHHHHHHHhcchhHHHHHHHHHHHHHHHhHhcc
Confidence 333444466666666655555665679999999999999998753 4444333221112222233333345689999999
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhccc
Q 014745 184 ICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTD 263 (419)
Q Consensus 184 ~~~~~~~~~gLs~~~Kll~q~~~a~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i~~iv~~~Na~Nl~D 263 (419)
+ ++|++.|++.|++++..+..+.+. .+.+. + .++. ...+.+++++++++++++++++||+|++|
T Consensus 93 ~--------~l~~~~RL~~Q~~aa~~l~~~~g~-~i~~~-~----~~~~--~~~i~~~~~~~~~tv~~iv~~iNA~N~iD 156 (365)
T PRK15119 93 F--------DISVKIRATIQAAVGIVMMVFAGL-YLSSL-G----YIFG--PWEMVLGPFGYFLTLFAVWAAINAFNMVD 156 (365)
T ss_pred c--------CCCHHHHHHHHHHHHHHHHHHhCc-chhcc-c----cccc--cccccchHHHHHHHHHHHHHHHhHHHhhc
Confidence 7 699999999999998776544321 11110 0 0110 11234567888999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHHhhcCc----cCCccccCchhHHHHHHHHHHHHHhhhh
Q 014745 264 GLDGLAGGTAALAFIGMSIAV-LPICSELSIFGASMAGACVGFLLHNR----YRASVFMGDTGSLALGGALASMAACTGM 338 (419)
Q Consensus 264 GlDGLA~G~s~I~~~~l~i~~-~~~~~~l~i~~~~l~GallGFL~~N~----~PAkIFMGDtGSl~LG~~la~~ai~~~~ 338 (419)
|+||||+|++++++.++++.. ..++.+...++++++|+++|||+||+ +|||+||||+||+++|+.+|+.++...+
T Consensus 157 GiDGLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~~l~ga~lgFL~fN~~~~~~pAkIFMGD~GS~~LGf~la~~~i~~~~ 236 (365)
T PRK15119 157 GIDGLLGGLSCVSFAAMGIILWFDGQTSLALWCFAMIAAILPYILLNLGILGRRYKVFMGDAGSTLIGFTVIWILLETTQ 236 (365)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEeccchhHHHHHHHHHHHHHHHhc
Confidence 999999999999999888754 34566677888999999999999999 5799999999999999999998876421
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCCCCCCCC--hhhHHHhhcCCChhHHHHHHHHHHHHHHH
Q 014745 339 -------FFPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMA--PFHHHLELCGLKEPMIVAGAYVISSVLAL 409 (419)
Q Consensus 339 -------~~~l~i~~~if~ie~lsvilqv~~fk~~rr~~g~g~~if~~~--plHh~l~~~G~se~~iv~~~~~i~~lla~ 409 (419)
.+..+++.++|++|++.+++ ||.+ +||++|++| |+||++.+.|+||+|++..+|.++++++.
T Consensus 237 ~~~~~~~~~~~l~~l~~Pl~D~~~~~~--------rR~~-~g~~~f~adr~Hlhh~L~~~G~s~~~~~~~i~~~~~~~~~ 307 (365)
T PRK15119 237 GKTHPISPVTALWIIAIPLMDMVAIMY--------RRLR-KGMSPFSPDRQHIHHLIMRAGFTSRQAFVLITLAAALLAS 307 (365)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHH--------HHHh-CCCCCCCCCCCcHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 11234567789999999997 6665 789999885 89999999999999999999999998887
Q ss_pred HHHH
Q 014745 410 FAGY 413 (419)
Q Consensus 410 ~~~~ 413 (419)
+++.
T Consensus 308 ~~~~ 311 (365)
T PRK15119 308 IGVL 311 (365)
T ss_pred HHHH
Confidence 7754
No 9
>cd06854 GT_WbpL_WbcO_like The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.
Probab=100.00 E-value=1.7e-49 Score=385.40 Aligned_cols=241 Identities=27% Similarity=0.364 Sum_probs=189.0
Q ss_pred hcCCCCCCCCCCCccccchhHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHH
Q 014745 125 KEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGF---SSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLI 201 (419)
Q Consensus 125 ~~~~~r~~~k~~tP~mGGl~ii~~~i~~~~l~~~~---~~~~i~~ll~~~l~~~~iG~iDD~~~~~~~~~~gLs~~~Kll 201 (419)
|.+++||.||++|||+||+++++..++...++... .+.+...++.+.+.++++|++||+. +++++.|+.
T Consensus 3 D~P~~Rk~H~~~~P~~GGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~DD~~--------~l~~~~kl~ 74 (253)
T cd06854 3 DIPNERSSHTKPTPRGGGIAFVLAFLLALLLAAAAGPLNDLSYLLLLIGLLLLAAVGFIDDLR--------SLSPKIRLL 74 (253)
T ss_pred CCCCCCCCCCCCcCCcChHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHhhcc--------CCCHHHHHH
Confidence 44457999999999999999886433322222211 1223334455666788999999997 699999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHH
Q 014745 202 LEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMS 281 (419)
Q Consensus 202 ~q~~~a~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l~ 281 (419)
.|++++.++....... .. .. .....++++++++++++++.+||+|++||+||||+|++++++.+++
T Consensus 75 ~q~~~a~~~~~~~~~~--~~-------~~-----~~~~~~~~~~~~~~~~iv~~~Na~Nl~DGldGLa~g~~~i~~~~l~ 140 (253)
T cd06854 75 VQLLAAALALYALGPL--TS-------LL-----LNFLPPWLIALLLLLAIVWIINLYNFMDGIDGLAGGEALVVFLALA 140 (253)
T ss_pred HHHHHHHHHHHHhhhH--hh-------hc-----chhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999887654332110 00 00 0124567889999999999999999999999999999999999887
Q ss_pred HHhc-ccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhhhh---h-HHHHHHHHHHHHHHHHH
Q 014745 282 IAVL-PICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACTGM---F-FPLFVSSGIFVVEASSV 356 (419)
Q Consensus 282 i~~~-~~~~~l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~~la~~ai~~~~---~-~~l~i~~~if~ie~lsv 356 (419)
+... .++.+...++.+++|+|+|||+||+||||+||||+||+++|+.+|++++.... + +..++++++|++|++++
T Consensus 141 ~~~~~~~~~~~~~~~~~l~ga~lgFL~~N~~pAkiFmGD~GS~~lG~~la~~~i~~~~~~~~~~~~l~~~~~p~~D~~~~ 220 (253)
T cd06854 141 LLGYLAGEPALALLALALAGALLGFLPFNWPPAKIFMGDVGSTFLGFLLAALLLLLALSGQSPWAWLLLLSPFLVDATVT 220 (253)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHHHhhCChhhcccccccHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 7543 45567788899999999999999999999999999999999999999987643 2 55567788999999999
Q ss_pred HHHHHhhhheeeccCCCCCCCCCC--hhhHHHhhcCCChhHH
Q 014745 357 IMQVLYFKITKHLLGGGRRLFRMA--PFHHHLELCGLKEPMI 396 (419)
Q Consensus 357 ilqv~~fk~~rr~~g~g~~if~~~--plHh~l~~~G~se~~i 396 (419)
++ ||.+ +||++|++| |+||++.+.|++|+|+
T Consensus 221 i~--------~R~~-~g~~~~~~dr~Hlhh~l~~~g~s~~~v 253 (253)
T cd06854 221 LL--------RRLL-RGENIFQAHRKHLYQRLARAGKSHRKV 253 (253)
T ss_pred HH--------HHHH-cCCCCCCCchhhHHHHHHHcCCCCCCC
Confidence 97 4444 689999985 7999999999999874
No 10
>cd06853 GT_WecA_like This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.
Probab=100.00 E-value=1.2e-46 Score=364.48 Aligned_cols=236 Identities=33% Similarity=0.443 Sum_probs=182.2
Q ss_pred CCCCCCCCccccchhHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHH
Q 014745 130 RHSRKGRTPTMGGLFFVPIGIAVTIATVGF---SSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAV 206 (419)
Q Consensus 130 r~~~k~~tP~mGGl~ii~~~i~~~~l~~~~---~~~~i~~ll~~~l~~~~iG~iDD~~~~~~~~~~gLs~~~Kll~q~~~ 206 (419)
||.||++||++||+++++..++...++... .+.+...++.+...++++|++||++ +++++.|+..|+++
T Consensus 1 Rk~H~~~~P~~GGi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~DD~~--------~l~~~~kl~~q~~~ 72 (249)
T cd06853 1 RKVHKGPIPRLGGLAIFLGFLLALLLALLFPFFLLPELLGLLAGATIIVLLGLLDDLF--------DLSPKVKLLGQILA 72 (249)
T ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHheehHHhcc--------CCCHHHHHHHHHHH
Confidence 688999999999999875433322222221 2233344455666778999999996 79999999999999
Q ss_pred HHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh-c
Q 014745 207 GTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV-L 285 (419)
Q Consensus 207 a~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l~i~~-~ 285 (419)
++++..+... ... ...|+ .......++++++++++++++++||+|++||+||||+|++++++.++++.. .
T Consensus 73 a~~~~~~~~~--~~~-----~~~~~--~~~~~~~~~~~~~~~~~~i~~~~Na~N~~DGidGLa~~~~~i~~~~l~~~~~~ 143 (249)
T cd06853 73 ALIVVFGGGV--ILS-----LLGPF--GGGIILLGWLSIPLTVLWIVGIINAINLIDGLDGLAGGVALIASLALAILALL 143 (249)
T ss_pred HHHHHHhcCe--eee-----ccccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 8876544321 100 01111 112345678889999999999999999999999999999999988877643 3
Q ss_pred ccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHH
Q 014745 286 PICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACTGMF-------FPLFVSSGIFVVEASSVIM 358 (419)
Q Consensus 286 ~~~~~l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~~la~~ai~~~~~-------~~l~i~~~if~ie~lsvil 358 (419)
.++.+...++++++|+++||++||+||||+||||+||+++|+.+|+.++....+ +..+++.++|++|++++++
T Consensus 144 ~~~~~~~~~~~~l~~a~lgFl~~N~~pakiFmGD~GS~~lG~~la~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~i~ 223 (249)
T cd06853 144 NGQVLVALLALALAGALLGFLPYNFHPARIFMGDAGSLFLGFLLAVLSILGTQKSSTAISPVVPLLILAVPLFDTLFVII 223 (249)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCcccEEeeCchHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999999999999999999999886543 3445678899999999998
Q ss_pred HHHhhhheeeccCCCCCCCCC--ChhhHHHhhcCC
Q 014745 359 QVLYFKITKHLLGGGRRLFRM--APFHHHLELCGL 391 (419)
Q Consensus 359 qv~~fk~~rr~~g~g~~if~~--~plHh~l~~~G~ 391 (419)
| |.+ +|||+|++ +|+|||+++.|+
T Consensus 224 r--------R~~-~g~~~f~~dr~Hlh~~l~~~g~ 249 (249)
T cd06853 224 R--------RLL-RGRSPFQADRDHLHHRLLRLGL 249 (249)
T ss_pred H--------HHH-cCCCCCCCCchhHHHHHHHccC
Confidence 4 443 68999996 589999998874
No 11
>cd06855 GT_GPT_euk UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. A series of six conserved motifs designated A through F, ranging in length from 5 to 13 amino acid residues, has been identified in this family. They have been determined to be important for stable expression, substrate binding, or catalytic activities.
Probab=100.00 E-value=1.7e-43 Score=348.24 Aligned_cols=238 Identities=18% Similarity=0.180 Sum_probs=175.4
Q ss_pred CCCCCCCCCccccchhHHHHHHHHHHHHh-hcc---------hhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHH
Q 014745 129 ARHSRKGRTPTMGGLFFVPIGIAVTIATV-GFS---------SLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWS 198 (419)
Q Consensus 129 ~r~~~k~~tP~mGGl~ii~~~i~~~~l~~-~~~---------~~~i~~ll~~~l~~~~iG~iDD~~~~~~~~~~gLs~~~ 198 (419)
.+|.||++|||+||++++.. +..+..+. ... ..+...++.+++.++++|++||+. +++++.
T Consensus 18 ~~k~~~~~vP~~GGlai~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~lDD~~--------~l~~~~ 88 (283)
T cd06855 18 LNKNGEEKIPESAGLVPGIV-FLIVLFLFIPFPFLKDFPHDKLVEYLSALLSICCMTFLGFADDVL--------DLRWRH 88 (283)
T ss_pred CCCCCCCCCCCcCcHHHHHH-HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHhhchh--------ccCchH
Confidence 46778899999999998753 33333221 110 122334556666788999999998 489999
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCCCCCccceeeeccc-ccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHH
Q 014745 199 RLILEVAVGTWFSFWLDAT-SIPSPYGMKMLVPLPA-PLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALA 276 (419)
Q Consensus 199 Kll~q~~~a~~~~~~~~~~-~i~~~~~~~~~i~~~~-~~~~~~lg~l~~~l~i~~iv~~~Na~Nl~DGlDGLA~G~s~I~ 276 (419)
|+++|++++.++.++.... ... ....|+.. .....++++++++++++++++++||+|++||+||||+|+++++
T Consensus 89 Kl~~q~~aa~~~~~~~~~~~~~~-----~~~~p~~~~~~~~i~l~~l~~~lt~~~iv~~~Na~N~~DGlDGLa~g~~~i~ 163 (283)
T cd06855 89 KLILPTFASLPLLMVYYGNTGIT-----LPIVPLRPLLGTLIDLGILYYVYMILLAVFCTNSINIYAGINGLEVGQSLVI 163 (283)
T ss_pred HHHHHHHHHHHHHHHHhcccccc-----eeecchhhcccccccccHHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHH
Confidence 9999999998654332211 111 01122110 0112456788999999999999999999999999999999999
Q ss_pred HHHHHHHh-c-----------ccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhhhhhHHHHH
Q 014745 277 FIGMSIAV-L-----------PICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACTGMFFPLFV 344 (419)
Q Consensus 277 ~~~l~i~~-~-----------~~~~~l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~~la~~ai~~~~~~~l~i 344 (419)
+.++++.. . .++.+...++++++|||+|||+||+|||||||||+||+++|+.+|++++..+++...++
T Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ga~lGFL~~N~~PAkIFMGD~GSl~LG~~la~~~i~~~~~~~~~~ 243 (283)
T cd06855 164 ALSILLYNLLELNGSSGSMTLDAHLFSLYLLLPFIAVSLALLYYNWYPSKVFVGDTFTYFAGMVFAVVGILGHFSKTLLL 243 (283)
T ss_pred HHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhcCCCccceeeechHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88887643 2 13456778899999999999999999999999999999999999999999988876666
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeccCCCCCCCCCChhh
Q 014745 345 SSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFH 383 (419)
Q Consensus 345 ~~~if~ie~lsvilqv~~fk~~rr~~g~g~~if~~~plH 383 (419)
...+.+++....+-| .++..||.+ +||++|++++-|
T Consensus 244 ~~~p~~~~~~l~~P~--~~~~~~r~~-~~~~~~~~d~~h 279 (283)
T cd06855 244 FFIPQIINFLYSLPQ--LFGIVPCPR-HRLPKFNPKTGL 279 (283)
T ss_pred HHHHHHHHHHHHHhH--hheeeeccc-cCCCCCCCCcCC
Confidence 555666665554444 345556665 789999998766
No 12
>cd06856 GT_GPT_archaea UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT)-like proteins in archaea. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaea gene, indicating that eukaryotic and archaeal enzymes may use the same substrates and are evolutionarily closer than the bacterial enzyme, which uses a different substrate.
Probab=100.00 E-value=3e-42 Score=339.11 Aligned_cols=261 Identities=21% Similarity=0.334 Sum_probs=191.7
Q ss_pred CCCCCCCccccchhHHHHHHHHHHHHh-hc-chhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHH
Q 014745 131 HSRKGRTPTMGGLFFVPIGIAVTIATV-GF-SSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGT 208 (419)
Q Consensus 131 ~~~k~~tP~mGGl~ii~~~i~~~~l~~-~~-~~~~i~~ll~~~l~~~~iG~iDD~~~~~~~~~~gLs~~~Kll~q~~~a~ 208 (419)
|.+|++||++||++++.. +.++..+. .. .+.+...++.++..++++|++||+. ++++|.|+++|+++++
T Consensus 7 k~~~~~vP~~GGi~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lG~~DD~~--------~l~~~~Kl~~~~~aa~ 77 (280)
T cd06856 7 KPGKPEVPEMGGIAVLLG-FSLGLLFLSALTHSVEALALLITSLLAGLIGLLDDIL--------GLSQSEKVLLTALPAI 77 (280)
T ss_pred ccCCCCCCCcchHHHHHH-HHHHHHHHHHccchHHHHHHHHHHHHHHHHHhhhccc--------cCCHHHHHHHHHHHHH
Confidence 344669999999998753 33333221 11 1223334456667788999999998 5999999999999998
Q ss_pred HHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh-ccc
Q 014745 209 WFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV-LPI 287 (419)
Q Consensus 209 ~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l~i~~-~~~ 287 (419)
++..+..... ...+|+ .+....++++++++++++++++||+|++||+|||++|++++++.++++.. ..+
T Consensus 78 ~l~~~~~~~~-------~~~~p~---~~~~~~~~~~~~~~~l~iv~~~Na~N~~DGinGL~~g~~~i~~~~l~~~~~~~~ 147 (280)
T cd06856 78 PLLVLKAGNP-------LTSLPI---GGRVLGILYYLLIVPLGITGASNAFNMLAGFNGLEAGMGIIILLALAIILLING 147 (280)
T ss_pred HHHHHHHhcc-------eeecCc---cchhhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHcC
Confidence 8755432110 011221 11112235677889999999999999999999999999999998887653 345
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhe-
Q 014745 288 CSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACTGMFFPLFVSSGIFVVEASSVIMQVLYFKIT- 366 (419)
Q Consensus 288 ~~~l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~~la~~ai~~~~~~~l~i~~~if~ie~lsvilqv~~fk~~- 366 (419)
+.+...++++++|+++||++||+||||+||||+||+++|+.+|++++..+.++..++++.|+++|.+..+.|..-.|-.
T Consensus 148 ~~~~~~l~~~l~~a~lgFL~~N~~PAkiF~GD~GS~~lG~~la~~~i~~~~~~~~~il~~P~~id~~l~l~~~~~~~~~~ 227 (280)
T cd06856 148 DYDALIIALILVAALLAFLLYNKYPAKVFPGDVGTLPIGALIGTIAVLGGLEIILLILLLPYVIDFLLKLRSKGGGKEHR 227 (280)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCccceeccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 6677788899999999999999999999999999999999999999999999988899999999999998875433211
Q ss_pred -ee--ccCCCCCCC--CCChhhH--HH-hhcCCChhHHHHHHHHHHHHHHHH
Q 014745 367 -KH--LLGGGRRLF--RMAPFHH--HL-ELCGLKEPMIVAGAYVISSVLALF 410 (419)
Q Consensus 367 -rr--~~g~g~~if--~~~plHh--~l-~~~G~se~~iv~~~~~i~~lla~~ 410 (419)
|+ .+++|+--- ..+.+|| .+ .++.++|+|+|...|.++.+++++
T Consensus 228 ~~~~~~~~~g~l~~~~~~~~~~~~~~l~~~g~~~E~~l~~~l~~i~~~~~~~ 279 (280)
T cd06856 228 EKPTKVLEDGTLYPPPDKSSLLTLRLLLRKGPMTEKEVVLVLWALEALLGIL 279 (280)
T ss_pred CCCCeECCCCcEecCCCcCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 11 112232111 1123444 23 357899999999999999999876
No 13
>cd06851 GT_GPT_like This family includes eukaryotic UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) and archaeal GPT-like glycosyltransferases. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaeal gene, indicating eukaryotic and archaeal enzymes may use the
Probab=100.00 E-value=6.8e-41 Score=319.71 Aligned_cols=207 Identities=21% Similarity=0.280 Sum_probs=159.5
Q ss_pred CCCCCCCCccccchhHHHHHHHHHHHH-hhc-----c---hhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHH
Q 014745 130 RHSRKGRTPTMGGLFFVPIGIAVTIAT-VGF-----S---SLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRL 200 (419)
Q Consensus 130 r~~~k~~tP~mGGl~ii~~~i~~~~l~-~~~-----~---~~~i~~ll~~~l~~~~iG~iDD~~~~~~~~~~gLs~~~Kl 200 (419)
+|.+|++|||+||++++.. +..+..+ ... . ..+.+.++.++..++++|++||+. ++|+|.|+
T Consensus 6 ~k~~~~~tP~~GGi~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~lDD~~--------~l~~~~Kl 76 (223)
T cd06851 6 NKKGNVMIPEPGGISILIG-FVASEITLIFFPFLSFPHFPISEILAALITSVLGFSVGIIDDRL--------TMGGWFKP 76 (223)
T ss_pred CCCCCCCCCCcchHHHHHH-HHHHHHHHHHccccccccchHHHHHHHHHHHHHHHHHHHHHhcc--------cCCHHHHH
Confidence 4567889999999998854 3333332 111 1 112333445556778999999998 59999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHH
Q 014745 201 ILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGM 280 (419)
Q Consensus 201 l~q~~~a~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l 280 (419)
+.|+.++.++....... .+ ...|+. ....++++++++++++++++++||+|++||+||||+|++++++.++
T Consensus 77 ~~q~~~a~~~~~~~~~~--~~-----~~~~~~--~~~~~~~~~~~~~~~~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l 147 (223)
T cd06851 77 VALAFAAAPILLLGAYD--SN-----LDFPLF--GGSVKIPSLYLVLVVFMIVITGNAFNSIAGLNGVEAGFTTIISFAL 147 (223)
T ss_pred HHHHHHHHHHHHHHHhc--cc-----eeeccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence 99999887664432211 00 112221 1234567888999999999999999999999999999999999888
Q ss_pred HHHh-cccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 014745 281 SIAV-LPICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACTGMFFPLFVSSGIFVVEAS 354 (419)
Q Consensus 281 ~i~~-~~~~~~l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~~la~~ai~~~~~~~l~i~~~if~ie~l 354 (419)
++.. ..++.+...++++++||++|||+||+|||||||||+||+++|+.+|++++..++|...+.+..|.++|..
T Consensus 148 ~~~~~~~~~~~~~~~~~~l~gallgFL~~N~~PAkIFMGD~GS~~lG~~la~~~i~~~~~~~~~~~~~P~~i~f~ 222 (223)
T cd06851 148 AISLLVQQNYEIGIACLCLAFASLAFLYYNKYPSRIFPGDTGAYMFGATYAVVAILGEVEKIAAVAFIPAIINFF 222 (223)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHhhcChhheeccchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 7653 3456778889999999999999999999999999999999999999999999998877777778888753
No 14
>cd06912 GT_MraY_like This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases, which catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate. This is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. The three bacterial members MraY, WecA, and WbpL/WbcO, utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-
Probab=100.00 E-value=4.9e-40 Score=307.45 Aligned_cols=189 Identities=26% Similarity=0.338 Sum_probs=144.5
Q ss_pred CCCCCCCCCCccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCc-hHHHHHHHHHH
Q 014745 128 PARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLS-AWSRLILEVAV 206 (419)
Q Consensus 128 ~~r~~~k~~tP~mGGl~ii~~~i~~~~l~~~~~~~~i~~ll~~~l~~~~iG~iDD~~~~~~~~~~gLs-~~~Kll~q~~~ 206 (419)
.+||.||++|||+||+++++..++...+.......+...+..++..++++|++||+++ ++ +|.|+++|+++
T Consensus 2 ~~rk~H~~~~P~~GGi~i~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~iG~~DD~~~--------l~~~~~kl~~q~~~ 73 (193)
T cd06912 2 GIQKFHTRPTPRIGGVAIFLGLLAGLLLLSLLSGSLLLLLLLAALPAFLAGLLEDITK--------RVSPRIRLLATFLS 73 (193)
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhhh--------cccHHHHHHHHHHH
Confidence 3689999999999999987643333333222222333344555667789999999985 78 99999999999
Q ss_pred HHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh-c
Q 014745 207 GTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV-L 285 (419)
Q Consensus 207 a~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l~i~~-~ 285 (419)
+.++..+.+. ...+ ...|+. ....++++++++++++++++.+||+|++||+|||++|++++++.++++.. .
T Consensus 74 a~~~~~~~~~-~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~iv~~~Na~N~~DGidGLa~g~~~i~~~~l~~~~~~ 145 (193)
T cd06912 74 ALLAVWLLGA-SITR-----LDLPGL--DLLLSFPPFAIIFTIFAVAGVANAFNIIDGFNGLASGVAIISLLSLALVAFQ 145 (193)
T ss_pred HHHHHHHhcC-ccce-----eecccc--ccchhhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 9876544321 1110 011221 11234577889999999999999999999999999999999998887653 3
Q ss_pred ccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHH
Q 014745 286 PICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASM 332 (419)
Q Consensus 286 ~~~~~l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~~la~~ 332 (419)
.++.+...++++++|+++|||+||+|||||||||+||+++|+.+|+.
T Consensus 146 ~g~~~~~~~~~~l~gallgFL~~N~~pAkiFmGD~GS~~lG~~la~l 192 (193)
T cd06912 146 VGDTDLAFLALLLAGALLGFLIFNFPFGKIFLGDGGAYLLGFLLAWL 192 (193)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCChhheeccchhhHHHHHHHHHh
Confidence 45667778899999999999999999999999999999999999875
No 15
>cd06499 GT_MraY-like Glycosyltransferase 4 (GT4) includes both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases. They catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate, which is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. One member, D-N-acetylhexosamine 1-phosphate transferase (GPT) is a eukaryotic enzyme, which is specific for UDP-GlcNAc as donor substrate and dolichol-phosphate as the membrane bound acceptor. The bacterial members MraY, WecA, and WbpL/WbcO utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of thei
Probab=100.00 E-value=5.8e-39 Score=298.35 Aligned_cols=182 Identities=34% Similarity=0.501 Sum_probs=140.4
Q ss_pred CCccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014745 136 RTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLD 215 (419)
Q Consensus 136 ~tP~mGGl~ii~~~i~~~~l~~~~~~~~i~~ll~~~l~~~~iG~iDD~~~~~~~~~~gLs~~~Kll~q~~~a~~~~~~~~ 215 (419)
+|||+||++++...++...++....+.+...++.+...++++|++||+++++| |+++|.|+..|++++.++.....
T Consensus 1 ~tP~~GGi~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~DD~~~l~~----gl~~~~kl~~q~~~a~~~~~~~~ 76 (185)
T cd06499 1 PTPTMGGLAILLGFLLGVLLYIPHSNTLILLALLSGLVAGIVGFIDDLLGLKV----ELSEREKLLLQILAALFLLLIGG 76 (185)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHhc----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 69999999987543332222222233344444556667789999999998644 89999999999999877654332
Q ss_pred cC-CCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh-cccChHHHH
Q 014745 216 AT-SIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV-LPICSELSI 293 (419)
Q Consensus 216 ~~-~i~~~~~~~~~i~~~~~~~~~~lg~l~~~l~i~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l~i~~-~~~~~~l~i 293 (419)
.. .. ..|+ ....++++++++++++++++.+||+|++||+||||+|++++++.++++.. ..++.+...
T Consensus 77 ~~~~~--------~~~~---~~~~~l~~~~~~~~~~~iv~~~Na~N~~DGlDGLa~g~~~i~~~~l~~~~~~~~~~~~~~ 145 (185)
T cd06499 77 GHTTV--------TTPL---GFVLDLGIFYIPFAIIAIVGATNAVNLIDGMDGLAAGISVIASIACALFALLSGQTTSAL 145 (185)
T ss_pred Hhcee--------ecCc---cchhhhhHHHHHHHHHHHHHHhhHhHHhhccchHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 11 11 1121 12346678899999999999999999999999999999999998887643 345667778
Q ss_pred HHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHH
Q 014745 294 FGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASM 332 (419)
Q Consensus 294 ~~~~l~GallGFL~~N~~PAkIFMGDtGSl~LG~~la~~ 332 (419)
++++++|+|+|||+||+||||+||||+||+++|+.+|++
T Consensus 146 ~~~~l~ga~lgFL~~N~~pAkiFmGD~GS~~lG~~la~~ 184 (185)
T cd06499 146 LFIILAGACLGFLYFNFYPAKIFMGDTGSYFLGAAYAAV 184 (185)
T ss_pred HHHHHHHHHHHHHHHhCCccceecccHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999975
No 16
>PF00953 Glycos_transf_4: Glycosyl transferase family 4; InterPro: IPR000715 This entry represents a family of UDP-GlcNAc/MurNAc: polyisoprenol-P GlcNAc/MurNAc-1-P transferases. Members of the family include eukaryotic N-acetylglucosamine-1-phosphate transferases, which catalyse the conversion of UDP-N-acteyl-D-glucosamine and dolichyl phosphate to UMP and N-acetyl-D-glucosaminyl-diphosphodolichol in the glycosylation pathway; and bacterial phospho-N-acetylmuramoyl-pentapeptide-transferases, which catalyse the first step of the lipid cycle reactions in the biosynthesis of cell wall peptidoglycan.; GO: 0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity, 0016021 integral to membrane
Probab=100.00 E-value=2e-32 Score=248.54 Aligned_cols=153 Identities=39% Similarity=0.552 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhh-cCCCCCCCccceeeecccccccchhh-hHH
Q 014745 167 ASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLD-ATSIPSPYGMKMLVPLPAPLGLLFLG-KFY 244 (419)
Q Consensus 167 ll~~~l~~~~iG~iDD~~~~~~~~~~gLs~~~Kll~q~~~a~~~~~~~~-~~~i~~~~~~~~~i~~~~~~~~~~lg-~l~ 244 (419)
++.++..++++|++||++ ++|+|.|+..|..++.++..... ...+ ++|...+..+++ +++
T Consensus 4 ~l~~~~~~~~iG~~DD~~--------~l~~~~rl~~q~~~a~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~ 65 (159)
T PF00953_consen 4 LLLALLLIGLIGLLDDLK--------GLSPRLRLLLQLLAALLLVFLGGGLTSL----------GIPFGGGIINLGPWLA 65 (159)
T ss_pred HHHHHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHHHHHHHHhccc----------ccccCcchHHHHHHHH
Confidence 345666788999999996 79999999999999988765432 1111 122122455666 678
Q ss_pred HHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHH
Q 014745 245 LLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV-LPICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSL 323 (419)
Q Consensus 245 ~~l~i~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l~i~~-~~~~~~l~i~~~~l~GallGFL~~N~~PAkIFMGDtGSl 323 (419)
++++++++++.+||+|++||+||+++|+++++...+++.. ..++.+...++.+++|+|+||++||+||||+||||+||+
T Consensus 66 ~~l~~~~i~~~~Na~N~~DG~dGla~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~a~lgfl~~N~~pakiFmGD~GS~ 145 (159)
T PF00953_consen 66 IILTVLWIVGFINAFNFMDGIDGLAAGVSIIALLALAVIAYLQGNYELAILCLALAGALLGFLIFNFPPAKIFMGDSGSL 145 (159)
T ss_pred HHHHHHHHHHHHhHHHhhccCcchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEeccHhHH
Confidence 8999999999999999999999999999999998888754 456778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 014745 324 ALGGALASMAACTG 337 (419)
Q Consensus 324 ~LG~~la~~ai~~~ 337 (419)
++|+.+|+.++..|
T Consensus 146 ~lG~~la~~~i~~~ 159 (159)
T PF00953_consen 146 FLGFLLAVLAILGH 159 (159)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987643
No 17
>KOG2788 consensus Glycosyltransferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=9.3e-18 Score=165.15 Aligned_cols=180 Identities=21% Similarity=0.262 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccc----c--ccchhh
Q 014745 168 SAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAP----L--GLLFLG 241 (419)
Q Consensus 168 l~~~l~~~~iG~iDD~~~~~~~~~~gLs~~~Kll~q~~~a~~~~~~~~~~~i~~~~~~~~~i~~~~~----~--~~~~lg 241 (419)
+.+.-.+.++|+.||.. ++++|.|+++..++++++.+.+..+ ++ .|++-.|++ . ...++|
T Consensus 105 llsi~~~ilLGfaDD~l--------dlrWRhKl~lPt~AtlPLLmVYyv~-----~g-~TtV~iP~~~r~~l~~~~~nlg 170 (418)
T KOG2788|consen 105 LLSICSMILLGFADDVL--------DLRWRHKLLLPTIATLPLLMVYYVS-----FG-VTTVVIPKPLRNILGLTSLNLG 170 (418)
T ss_pred HHHHhHHHHhcccchhc--------cchhhhheeccchhhCceEEEEEEc-----CC-ceEEEecHHHHhhhccceeccc
Confidence 34444567899999999 5999999999999998874322110 01 122223321 1 244678
Q ss_pred hHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHH---hc--ccCh--------HHHHHHHHHHHHHHHHhhc
Q 014745 242 KFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIA---VL--PICS--------ELSIFGASMAGACVGFLLH 308 (419)
Q Consensus 242 ~l~~~l~i~~iv~~~Na~Nl~DGlDGLA~G~s~I~~~~l~i~---~~--~~~~--------~l~i~~~~l~GallGFL~~ 308 (419)
.+|.+..-...+.++|++|+..|+||+..|+++++.....+- .. +.++ .-..+...+.+..++.+.|
T Consensus 171 ~lYy~yM~~lavFCtNsINIlAGiNGlEvGQslvia~~i~l~~l~~~~~~~~~~~~~~~h~fSlyl~~p~~~~sl~ll~~ 250 (418)
T KOG2788|consen 171 FLYYVYMGLLAVFCTNSINILAGINGLEVGQSLVIAASILLNNLVYLWRSVDPEATRFAHAFSLYLTIPLLATSLALLKY 250 (418)
T ss_pred chHHhhhceeeeeccCchhhhcccchheeccchhhhHHHHhhhHHHHhcccCccccchhhhHHHHHHhHHHHHHHHHHHh
Confidence 899999888899999999999999999999999877665531 11 1111 1235667899999999999
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 014745 309 NRYRASVFMGDTGSLALGGALASMAACTGMFFPLFVSSGIFVVEASSVIMQVL 361 (419)
Q Consensus 309 N~~PAkIFMGDtGSl~LG~~la~~ai~~~~~~~l~i~~~if~ie~lsvilqv~ 361 (419)
||||+|||.|||-.|+-|...|+..|.++..-.+++...+-+++.+..+-|..
T Consensus 251 n~yPsrVFVGDTfcyfaGMt~AVVgILGHFSKTllLFFiPQI~NFlyS~PQLf 303 (418)
T KOG2788|consen 251 NWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTLLLFFIPQILNFLYSLPQLF 303 (418)
T ss_pred ccCCceEEeccceeeeccchhhhhHHhhhhHHHHHHHHHHHHHHHHHhhHHHc
Confidence 99999999999999999999999999998766666777788999999999963
No 18
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=96.69 E-value=0.00038 Score=37.37 Aligned_cols=12 Identities=67% Similarity=1.182 Sum_probs=10.5
Q ss_pred CCCCccccchhH
Q 014745 134 KGRTPTMGGLFF 145 (419)
Q Consensus 134 k~~tP~mGGl~i 145 (419)
|++||+|||++|
T Consensus 1 K~gTPTMGGi~~ 12 (13)
T PF10555_consen 1 KSGTPTMGGIVF 12 (13)
T ss_pred CCCCccceeEEE
Confidence 679999999875
No 19
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=52.72 E-value=1.2e+02 Score=30.30 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHH
Q 014745 168 SAATLAIALIGLIDDVICLVKNHSSGLSAWSRL 200 (419)
Q Consensus 168 l~~~l~~~~iG~iDD~~~~~~~~~~gLs~~~Kl 200 (419)
+...+.+++.||.-|+.----|++-|++-+-|+
T Consensus 241 ~~~~~~I~l~GF~GdlvmSaiKRd~gvKD~G~l 273 (303)
T COG4589 241 LLAGLLIGLSGFCGDLVMSAIKRDVGVKDSGKL 273 (303)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcCCCccccc
Confidence 344556778999999864333444455544443
No 20
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=42.77 E-value=1.2e+02 Score=30.93 Aligned_cols=54 Identities=17% Similarity=0.328 Sum_probs=30.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014745 49 RRRHRIKLGLFINLGLITFLTVLLLFVDWCAWKIVRLPLAPFYLTRPFFISAVLVSCAGYICVPLLKSL 117 (419)
Q Consensus 49 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lis~~~~~~~ip~l~~~ 117 (419)
|+|+++.++..-.+.+...+..+++.+.+.. ...+|+++++++ .+.+-|..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~il~P~~~A~~i----a~ll~P~v~~L 54 (344)
T PRK12287 1 MAKPIITLNGLKIVIMLGMLVIILCGIRFAA-----------DIIVPFILALFI----AVVLNPLVQHM 54 (344)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4667766654444444555555555555533 256777666655 45555666554
No 21
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=32.97 E-value=1.5e+02 Score=22.95 Aligned_cols=7 Identities=29% Similarity=0.639 Sum_probs=3.0
Q ss_pred HHhhhhh
Q 014745 43 AMIGRAR 49 (419)
Q Consensus 43 ~~~~~~~ 49 (419)
-.+||.+
T Consensus 16 ~RvGr~q 22 (60)
T PF06072_consen 16 RRVGRQQ 22 (60)
T ss_pred HHHhHHH
Confidence 3444443
No 22
>PF15259 GTSE1_N: G-2 and S-phase expressed 1
Probab=30.63 E-value=29 Score=31.28 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=32.5
Q ss_pred CCCCCCCCCceeeeccccCCC---------Ccccc-------------c--ccchhhHHHHHHHH-hhhhhhhhhhhhhh
Q 014745 4 SSEGEESDGEIVLNSISDTDL---------PSVFV-------------S--NNDALTLTAHRLAM-IGRARRRHRIKLGL 58 (419)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~-------------~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 58 (419)
||++||.|+|++..||---|= |.... + .=+.+---|||||. |+.+-|+.|-+.+.
T Consensus 20 ss~e~eeddeVf~gPv~hkercis~~~~~~~~~~~~~~~~~~~swsPLsgek~~Ei~kEA~~LA~QlE~~~~~~~~~~~~ 99 (141)
T PF15259_consen 20 SSNEEEEDDEVFFGPVGHKERCISASLESQPEAPAPPPQGERFSWSPLSGEKFVEIFKEAHRLALQLEQCSLQERESAAE 99 (141)
T ss_pred ccCCcccCcceeecCCCcccceeecccccCccCCCCCcccCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 456668899999999854331 11110 0 11345567899874 66666666655443
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=27.95 E-value=7.1e+02 Score=25.96 Aligned_cols=8 Identities=13% Similarity=-0.143 Sum_probs=3.7
Q ss_pred HHH-Hhhhh
Q 014745 177 IGL-IDDVI 184 (419)
Q Consensus 177 iG~-iDD~~ 184 (419)
.++ +|-++
T Consensus 423 ~~~~~~~~~ 431 (446)
T PRK10197 423 CTVPIMARW 431 (446)
T ss_pred hhhHHHhhh
Confidence 444 55444
No 24
>PRK10238 aromatic amino acid transporter; Provisional
Probab=25.45 E-value=8e+02 Score=25.68 Aligned_cols=17 Identities=12% Similarity=0.424 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 014745 61 NLGLITFLTVLLLFVDW 77 (419)
Q Consensus 61 ~~~l~~~l~~~~~~~~~ 77 (419)
.+.+...+.++.++..+
T Consensus 335 Ail~~~~i~~l~~l~~~ 351 (456)
T PRK10238 335 TILVSALVTALCVLINY 351 (456)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444455544433
No 25
>PF06942 GlpM: GlpM protein; InterPro: IPR009707 This family consists of several bacterial GlpM membrane proteins. GlpM is a hydrophobic protein containing 109 amino acids. It is thought that GlpM may play a role in alginate biosynthesis in Pseudomonas aeruginosa [].
Probab=25.03 E-value=4.5e+02 Score=22.71 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHhhhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 014745 34 ALTLTAHRLAMIGRARR--RHRIKLGLFINLGLITFLTVLLLFVDWCA 79 (419)
Q Consensus 34 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 79 (419)
..++.||....-+|+.- |.-+.-|.+...-=.+|+..+||+.+++.
T Consensus 33 TFALIahyiVg~er~~~~lr~T~lFgi~siipy~~yL~svy~~~~~~~ 80 (107)
T PF06942_consen 33 TFALIAHYIVGSERGMEALRTTALFGIWSIIPYAAYLLSVYYFSDRMR 80 (107)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 35789999999999665 44456788888888999999999998866
No 26
>PF02313 Fumarate_red_D: Fumarate reductase subunit D; InterPro: IPR003418 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 13kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.; GO: 0006106 fumarate metabolic process, 0016020 membrane; PDB: 3P4R_P 1KF6_P 3P4Q_P 3P4S_D 3CIR_P 2B76_D 1L0V_P 3P4P_D 1KFY_P.
Probab=23.96 E-value=97 Score=27.20 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=23.9
Q ss_pred ChhhHHHhhcCCCh-hHHHHHHHHHHHHHHHHHHHH
Q 014745 380 APFHHHLELCGLKE-PMIVAGAYVISSVLALFAGYV 414 (419)
Q Consensus 380 ~plHh~l~~~G~se-~~iv~~~~~i~~lla~~~~~~ 414 (419)
|++||-+.+.+++. +..-..+|..+.+.++++++.
T Consensus 80 HRi~h~lHDl~ih~g~~~~~~~YG~A~l~svva~~~ 115 (118)
T PF02313_consen 80 HRIHHGLHDLKIHVGPAGKWVCYGLAALGSVVALIL 115 (118)
T ss_dssp HHHHHHHHHTT----TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 45888888888776 444456799999888888664
No 27
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=21.93 E-value=5.2e+02 Score=22.26 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014745 89 PFYLTRPFFISAVLVSCAGYICVPLLKSLK 118 (419)
Q Consensus 89 ~~~~~~~~~ls~lis~~~~~~~ip~l~~~~ 118 (419)
........+++.+++.+++....-.++|++
T Consensus 79 ~~~v~~~~~~~~~~~~~~~~~l~~~~~k~g 108 (135)
T PF01769_consen 79 AIIVALSIILSIILALLLGYLLPIILWKIG 108 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444555566666666666666666543
No 28
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=20.86 E-value=4.7e+02 Score=28.52 Aligned_cols=73 Identities=19% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCccc
Q 014745 61 NLGLITFLTVLLLFVDWCAWKIVRLPLAPFYLTRPFFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTM 140 (419)
Q Consensus 61 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lis~~~~~~~ip~l~~~~~~~~ir~~~~~r~~~k~~tP~m 140 (419)
|.+=.....+.-++-++..| -+.+.++.+ ....+.+.-...+|.-.+...+++... ...+...|..
T Consensus 165 NiGsl~~p~i~~~~~~~~g~------------~~gF~~aav-Gm~~gl~~f~~~~r~~~~~~~~~~~~~-~~~~~~~~~~ 230 (498)
T COG3104 165 NIGSLIAPIITGLLAINYGW------------HVGFGLAAV-GMIIGLVIFLLGRRHVKGIGGVPDPNP-LSFNFLLPVL 230 (498)
T ss_pred ehHHHHHHHHHHHHHHhhCH------------HHHHHHHHH-HHHHHHHHHHHccchhcCCCCCCCccc-hhhhhhhhhH
Confidence 45544444455555555443 233333322 334455555555554443332232222 2346688998
Q ss_pred cchhHHH
Q 014745 141 GGLFFVP 147 (419)
Q Consensus 141 GGl~ii~ 147 (419)
++++...
T Consensus 231 ~~~~~~~ 237 (498)
T COG3104 231 GGLVVMI 237 (498)
T ss_pred HHHHHHH
Confidence 8887654
Done!