Query 014745
Match_columns 419
No_of_seqs 253 out of 1518
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 29.3 53 0.0018 20.6 3.0 29 51-79 2-30 (32)
2 1kf6_D Fumarate reductase 13 k 23.5 70 0.0024 26.9 3.7 34 380-413 81-114 (119)
3 3mp7_A Preprotein translocase 15.4 2.1E+02 0.0073 29.3 6.1 22 364-385 460-481 (482)
4 2nrr_A Uvrabc system protein C 15.2 47 0.0016 29.3 1.0 17 37-55 142-158 (159)
5 2ls4_A High affinity copper up 19.4 35 0.0012 21.1 0.0 20 294-313 6-25 (26)
6 2l42_A DNA-binding protein RAP 12.8 95 0.0033 25.4 2.0 22 8-29 53-74 (106)
7 3aqp_A Probable secdf protein- 9.7 8E+02 0.027 26.2 8.7 25 92-116 697-721 (741)
8 2aff_B MKI67 FHA domain intera 9.6 93 0.0032 21.6 0.8 12 7-18 29-40 (44)
9 2nrt_A Uvrabc system protein C 9.5 1.2E+02 0.004 28.1 1.8 17 38-56 148-164 (220)
10 3ukx_C Bimax2 peptide; arm rep 7.9 1.2E+02 0.0041 18.5 0.7 7 7-13 12-18 (28)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=29.33 E-value=53 Score=20.64 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=14.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 014745 51 RHRIKLGLFINLGLITFLTVLLLFVDWCA 79 (419)
Q Consensus 51 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 79 (419)
||.|-.=..-...|..++..-+++|.|++
T Consensus 2 khtiweviaglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443333333445555555666666654
No 2
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=23.50 E-value=70 Score=26.85 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=26.4
Q ss_pred ChhhHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 014745 380 APFHHHLELCGLKEPMIVAGAYVISSVLALFAGY 413 (419)
Q Consensus 380 ~plHh~l~~~G~se~~iv~~~~~i~~lla~~~~~ 413 (419)
|++||-+.+.+.+...--..+|..+.+..++++.
T Consensus 81 HRihh~lHDlkih~~~~~~~~Yg~A~l~sv~~~~ 114 (119)
T 1kf6_D 81 HRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLI 114 (119)
T ss_dssp HHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhheeecCcchhhHHHHHHHHHHHHHH
Confidence 4589988888887776667889988887777643
No 3
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=15.40 E-value=2.1e+02 Score=29.35 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=7.6
Q ss_pred hheeeccCCCCCCCCCChhhHH
Q 014745 364 KITKHLLGGGRRLFRMAPFHHH 385 (419)
Q Consensus 364 k~~rr~~g~g~~if~~~plHh~ 385 (419)
+..||..|+|.-.-+.+|-|||
T Consensus 460 ~~l~~~~g~~~~~~~~~~~~~~ 481 (482)
T 3mp7_A 460 PALRKLFGAGTLVPRGSHHHHH 481 (482)
T ss_dssp HHHHHTTSSCC-----------
T ss_pred HHHHHHhcCCccccCCcccccC
Confidence 3456777888777776655544
No 4
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=15.16 E-value=47 Score=29.29 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhhhhhhhhh
Q 014745 37 LTAHRLAMIGRARRRHRIK 55 (419)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~ 55 (419)
--|||+|. ..|||.|.|
T Consensus 142 DEaHRFAI--t~HR~~R~k 158 (159)
T 2nrr_A 142 DETHRFAV--SYHRKRREK 158 (159)
T ss_dssp HHHHHHHH--TC-------
T ss_pred HHHHHHHH--HHHHHHhcc
Confidence 34899998 567776654
No 5
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=19.37 E-value=35 Score=21.13 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcCccCC
Q 014745 294 FGASMAGACVGFLLHNRYRA 313 (419)
Q Consensus 294 ~~~~l~GallGFL~~N~~PA 313 (419)
+.+..+||.+|++.|.+.++
T Consensus 6 ~iavvlGa~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 6 CIAVAAGAGTGYFLFSWKKX 25 (26)
Confidence 44567899999999887654
No 6
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=12.76 E-value=95 Score=25.43 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.1
Q ss_pred CCCCCceeeeccccCCCCcccc
Q 014745 8 EESDGEIVLNSISDTDLPSVFV 29 (419)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ 29 (419)
|.+++.||..|.-|.+||+++-
T Consensus 53 ~s~~~~yVVSpyN~t~LpTVtp 74 (106)
T 2l42_A 53 ESKENVFIVSPYNHTNLPTVTP 74 (106)
T ss_dssp CCSSCCCCBCTTCCCSSSBCCT
T ss_pred cccCCeEEEeCCCCCCCccccH
Confidence 4467899999999999999884
No 7
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=9.68 E-value=8e+02 Score=26.20 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 014745 92 LTRPFFISAVLVSCAGYICVPLLKS 116 (419)
Q Consensus 92 ~~~~~~ls~lis~~~~~~~ip~l~~ 116 (419)
.....++..+++++.+..+.|-+-.
T Consensus 697 ~g~~~~~Gl~~~~~~sl~l~Pal~~ 721 (741)
T 3aqp_A 697 FALAIFVGIFVGTYSSIYVVSALVV 721 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566667777777776644
No 8
>2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens}
Probab=9.64 E-value=93 Score=21.56 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=9.3
Q ss_pred CCCCCCceeeec
Q 014745 7 GEESDGEIVLNS 18 (419)
Q Consensus 7 ~~~~~~~~~~~~ 18 (419)
++|+|+|+|+..
T Consensus 29 dDd~D~EIvfK~ 40 (44)
T 2aff_B 29 DDDKDDEIVFKQ 40 (44)
T ss_dssp GGGGSCSEEESS
T ss_pred CCCccceEEeec
Confidence 578899998753
No 9
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=9.46 E-value=1.2e+02 Score=28.06 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=11.5
Q ss_pred HHHHHHHhhhhhhhhhhhh
Q 014745 38 TAHRLAMIGRARRRHRIKL 56 (419)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~ 56 (419)
-|||+|. ..|||+|.++
T Consensus 148 EaHRFAI--t~hr~~R~k~ 164 (220)
T 2nrt_A 148 ETHRFAV--SYHRKRREKE 164 (220)
T ss_dssp HHHHHHH--GGGHHHHHHH
T ss_pred hhhhccc--cccccccccc
Confidence 5899987 4556666554
No 10
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=7.95 E-value=1.2e+02 Score=18.50 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=4.3
Q ss_pred CCCCCCc
Q 014745 7 GEESDGE 13 (419)
Q Consensus 7 ~~~~~~~ 13 (419)
-||+|+|
T Consensus 12 rewdddd 18 (28)
T 3ukx_C 12 REWDDDD 18 (28)
T ss_dssp CCCCCSS
T ss_pred cccccCC
Confidence 4676665
Done!