Query 014745
Match_columns 419
No_of_seqs 253 out of 1518
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 17:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014745.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014745hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 27.9 24 0.0018 27.6 3.7 35 380-414 81-115 (119)
2 d1ycya1 b.38.1.4 (A:5-70) Hypo 8.3 41 0.003 23.2 0.3 15 8-22 30-45 (66)
3 d1e3ha5 d.101.1.1 (A:152-262) 6.8 52 0.0038 25.1 0.2 11 10-20 13-23 (111)
4 d1jyea_ c.93.1.1 (A:) Lac-repr 6.3 98 0.0071 25.7 1.9 30 20-51 91-120 (271)
5 d1twfc2 d.181.1.1 (C:42-172) R 5.9 78 0.0057 24.3 0.9 11 37-47 21-31 (131)
6 d2yvxa3 f.57.1.1 (A:276-448) M 5.7 6.2E+02 0.045 19.9 8.3 80 32-116 57-138 (173)
7 d1mvfd_ b.129.1.1 (D:) MazE {E 4.0 1E+02 0.0076 19.4 0.3 12 8-19 33-44 (44)
8 d1v54c_ f.25.1.1 (C:) Mitochon 3.9 9.5E+02 0.069 19.7 8.7 63 16-85 119-184 (259)
9 d1iv3a_ d.79.5.1 (A:) 2C-methy 3.9 56 0.0041 26.4 -1.6 13 9-21 33-45 (150)
10 d1ka8a_ a.4.5.20 (A:) P4 origi 3.8 49 0.0036 25.0 -1.8 20 43-62 68-87 (100)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=27.88 E-value=24 Score=27.62 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=26.9
Q ss_pred ChhhHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 014745 380 APFHHHLELCGLKEPMIVAGAYVISSVLALFAGYV 414 (419)
Q Consensus 380 ~plHh~l~~~G~se~~iv~~~~~i~~lla~~~~~~ 414 (419)
|++||-+.+.+.+-..--..+|..+.+.++++++.
T Consensus 81 HRihHglHDlkih~p~g~~~fYg~A~l~sv~~~~~ 115 (119)
T d1kf6d_ 81 HRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIG 115 (119)
T ss_dssp HHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHH
Confidence 46899898888876655567899998888877653
No 2
>d1ycya1 b.38.1.4 (A:5-70) Hypothetical protein PF1955 {Pyrococcus furiosus [TaxId: 2261]}
Probab=8.28 E-value=41 Score=23.17 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=12.2
Q ss_pred CCCCCce-eeeccccC
Q 014745 8 EESDGEI-VLNSISDT 22 (419)
Q Consensus 8 ~~~~~~~-~~~~~~~~ 22 (419)
||.|+|. .|.-|+|+
T Consensus 30 edFDeEviLL~dV~D~ 45 (66)
T d1ycya1 30 EDFDEEVILLKDVVDV 45 (66)
T ss_dssp EEECSSEEEEEEEEET
T ss_pred hhcCcceEeehhhHHH
Confidence 7899998 56778884
No 3
>d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]}
Probab=6.79 E-value=52 Score=25.05 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=9.5
Q ss_pred CCCceeeeccc
Q 014745 10 SDGEIVLNSIS 20 (419)
Q Consensus 10 ~~~~~~~~~~~ 20 (419)
-|||+++||..
T Consensus 13 idge~viNPt~ 23 (111)
T d1e3ha5 13 IRGQWVAFPTH 23 (111)
T ss_dssp ETTEEEESCCH
T ss_pred ECCEEEECCCH
Confidence 48999999985
No 4
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=6.28 E-value=98 Score=25.69 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=21.5
Q ss_pred ccCCCCcccccccchhhHHHHHHHHhhhhhhh
Q 014745 20 SDTDLPSVFVSNNDALTLTAHRLAMIGRARRR 51 (419)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (419)
.+.++|.....+.++...++++|. +|||||
T Consensus 91 ~~~~~~~V~~D~~~~~~~~~~~L~--~~G~~~ 120 (271)
T d1jyea_ 91 DQTPINSIIFSHEDGTRLGVEHLV--ALGHQQ 120 (271)
T ss_dssp TTSSSCEEEECHHHHHHHHHHHHH--HHTCCS
T ss_pred ccccCCccccchhhccccceeeee--cccccc
Confidence 344556656678888888999987 478774
No 5
>d1twfc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.91 E-value=78 Score=24.25 Aligned_cols=11 Identities=45% Similarity=0.667 Sum_probs=9.3
Q ss_pred HHHHHHHHhhh
Q 014745 37 LTAHRLAMIGR 47 (419)
Q Consensus 37 ~~~~~~~~~~~ 47 (419)
+.||||++|+=
T Consensus 21 ~iaHRLglIPi 31 (131)
T d1twfc2 21 FIAHRLGLIPL 31 (131)
T ss_dssp HHHHHHHTSCE
T ss_pred HHHHhhcCcee
Confidence 68999999874
No 6
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=5.74 E-value=6.2e+02 Score=19.89 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=32.3
Q ss_pred cchhhHHHHHHHH--hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHH
Q 014745 32 NDALTLTAHRLAM--IGRARRRHRIKLGLFINLGLITFLTVLLLFVDWCAWKIVRLPLAPFYLTRPFFISAVLVSCAGYI 109 (419)
Q Consensus 32 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lis~~~~~~ 109 (419)
+++.|++-..++. +.+...|+..++.....+.+...+..+....-| |. +-|.-..-...+..++.+++.++|-
T Consensus 57 ~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~~~~~~--~~--~~~~l~~vi~~sl~~~~~ia~~~G~- 131 (173)
T d2yvxa3 57 NQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVY--WD--GHPLLLPVVGVSLVLIVFFANLVGA- 131 (173)
T ss_dssp HHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HT--SCCSSCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc--cccHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4455555555543 333334444444433333333333333333222 22 1122222333444444444444443
Q ss_pred HHHHHHH
Q 014745 110 CVPLLKS 116 (419)
Q Consensus 110 ~ip~l~~ 116 (419)
.+|++-+
T Consensus 132 ~lPlll~ 138 (173)
T d2yvxa3 132 MLPFLLR 138 (173)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4566533
No 7
>d1mvfd_ b.129.1.1 (D:) MazE {Escherichia coli [TaxId: 562]}
Probab=4.04 E-value=1e+02 Score=19.44 Aligned_cols=12 Identities=17% Similarity=0.681 Sum_probs=9.2
Q ss_pred CCCCCceeeecc
Q 014745 8 EESDGEIVLNSI 19 (419)
Q Consensus 8 ~~~~~~~~~~~~ 19 (419)
|-.||++++.||
T Consensus 33 ~v~~g~ivi~Pv 44 (44)
T d1mvfd_ 33 DLVDGKLIIEPV 44 (44)
T ss_dssp EEETTEEEEEEC
T ss_pred EEECCEEEEEEC
Confidence 346888999886
No 8
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.93 E-value=9.5e+02 Score=19.68 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=30.1
Q ss_pred eeccccCCCCcccc--cccchhhHH-HHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhccC
Q 014745 16 LNSISDTDLPSVFV--SNNDALTLT-AHRLAMIGRARRRHRIKLGLFINLGLITFLTVLLLFVDWCAWKIVRL 85 (419)
Q Consensus 16 ~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 85 (419)
++|+.+.++|..+- ==.-+.|++ |||-.+ ||+||+ .+ ..+.+++.+..+....++.||.+-..
T Consensus 119 i~~~~~~~lpllnT~vLl~Ss~t~~~A~~~~~--~~~~~~-~~----~~l~~t~~lg~~Fl~~q~~Ey~~~~~ 184 (259)
T d1v54c_ 119 IHPLNPLEVPLLNTSVLLASGVSITWAHHSLM--EGDRKH-ML----QALFITITLGVYFTLLQASEYYEAPF 184 (259)
T ss_dssp CCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHH--TTBHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHH--hCCchh-HH----HHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 45556667776652 011122332 666553 222222 22 23445555556666667766654333
No 9
>d1iv3a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Thermus thermophilus [TaxId: 274]}
Probab=3.85 E-value=56 Score=26.37 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=11.9
Q ss_pred CCCCceeeecccc
Q 014745 9 ESDGEIVLNSISD 21 (419)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (419)
.||||+++-.++|
T Consensus 33 HSDgDv~~HAl~D 45 (150)
T d1iv3a_ 33 HSDGDAAMHALTD 45 (150)
T ss_dssp SSCCCHHHHHHHH
T ss_pred ccCccHHHHHHHH
Confidence 6999999999998
No 10
>d1ka8a_ a.4.5.20 (A:) P4 origin-binding domain {Bacteriophage P4 [TaxId: 10680]}
Probab=3.82 E-value=49 Score=25.03 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=15.5
Q ss_pred HHhhhhhhhhhhhhhhhHHH
Q 014745 43 AMIGRARRRHRIKLGLFINL 62 (419)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~ 62 (419)
..-|+..+|+|+++|...|+
T Consensus 68 keyG~~y~Krrtk~G~rtNv 87 (100)
T d1ka8a_ 68 KEYGLNYEKRHTKQGIQTNL 87 (100)
T ss_dssp HHTTCCCCEEEETTEEEESE
T ss_pred HHHHHHHhhhhhcCceEeee
Confidence 44677889999999976653
Done!