Query 014746
Match_columns 419
No_of_seqs 245 out of 1541
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:07:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02762 pyruvate kinase compl 100.0 2E-113 5E-118 892.5 47.2 381 27-418 24-509 (509)
2 PTZ00066 pyruvate kinase; Prov 100.0 3E-113 6E-118 891.3 46.7 397 10-418 19-513 (513)
3 PLN02461 Probable pyruvate kin 100.0 1E-112 2E-117 887.9 47.2 398 12-418 4-511 (511)
4 PLN02765 pyruvate kinase 100.0 2E-112 4E-117 885.9 48.3 409 1-419 1-526 (526)
5 COG0469 PykF Pyruvate kinase [ 100.0 3E-112 7E-117 874.6 44.8 381 26-417 3-477 (477)
6 PRK09206 pyruvate kinase; Prov 100.0 7E-111 2E-115 869.3 46.1 380 27-417 1-470 (470)
7 PRK06247 pyruvate kinase; Prov 100.0 2E-110 4E-115 865.3 45.6 378 26-419 3-472 (476)
8 cd00288 Pyruvate_Kinase Pyruva 100.0 1E-108 3E-113 857.2 46.1 379 27-417 1-480 (480)
9 PRK06354 pyruvate kinase; Prov 100.0 3E-108 5E-113 871.8 45.9 382 26-418 6-479 (590)
10 PRK05826 pyruvate kinase; Prov 100.0 1E-105 2E-110 832.2 44.8 369 26-406 2-458 (465)
11 PRK06739 pyruvate kinase; Vali 100.0 1E-105 3E-110 804.1 40.2 343 29-387 2-345 (352)
12 PF00224 PK: Pyruvate kinase, 100.0 4E-106 8E-111 813.3 33.4 336 27-374 1-342 (348)
13 PLN02623 pyruvate kinase 100.0 3E-103 6E-108 822.9 46.1 378 26-417 108-579 (581)
14 PTZ00300 pyruvate kinase; Prov 100.0 5E-100 1E-104 786.0 43.3 352 54-417 1-453 (454)
15 TIGR01064 pyruv_kin pyruvate k 100.0 2.8E-99 6E-104 789.1 43.7 376 28-414 1-473 (473)
16 KOG2323 Pyruvate kinase [Carbo 100.0 7.6E-97 2E-101 756.8 36.6 382 24-417 17-501 (501)
17 PRK14725 pyruvate kinase; Prov 100.0 5.2E-95 1.1E-99 760.5 40.2 337 16-373 130-596 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 3.3E-93 7.1E-98 741.4 38.8 338 16-373 124-479 (493)
19 TIGR03239 GarL 2-dehydro-3-deo 99.7 2.3E-16 5.1E-21 153.0 13.2 131 204-351 69-234 (249)
20 PRK10558 alpha-dehydro-beta-de 99.7 2.9E-16 6.3E-21 153.0 12.8 133 203-352 75-242 (256)
21 PRK10128 2-keto-3-deoxy-L-rham 99.6 1.4E-15 3.1E-20 148.8 13.1 132 205-351 76-241 (267)
22 COG3836 HpcH 2,4-dihydroxyhept 99.6 6E-15 1.3E-19 139.5 12.5 131 203-350 73-239 (255)
23 TIGR02311 HpaI 2,4-dihydroxyhe 99.6 9E-15 2E-19 142.0 12.0 131 206-351 71-235 (249)
24 PF03328 HpcH_HpaI: HpcH/HpaI 99.5 4.7E-15 1E-19 141.0 5.5 132 208-346 74-218 (221)
25 TIGR01588 citE citrate lyase, 99.4 2.1E-12 4.5E-17 128.0 10.2 134 205-346 71-220 (288)
26 TIGR01418 PEP_synth phosphoeno 99.3 7.7E-12 1.7E-16 138.9 13.2 151 202-372 609-782 (782)
27 PRK06464 phosphoenolpyruvate s 99.3 1.5E-11 3.3E-16 136.6 13.8 149 204-372 618-789 (795)
28 TIGR01417 PTS_I_fam phosphoeno 99.2 1.5E-10 3.3E-15 124.4 13.7 135 201-347 365-525 (565)
29 PRK11177 phosphoenolpyruvate-p 99.1 2.1E-09 4.6E-14 115.7 16.9 135 201-347 366-526 (575)
30 COG2301 CitE Citrate lyase bet 99.0 1.4E-09 3.1E-14 107.0 8.4 162 205-372 66-244 (283)
31 TIGR01344 malate_syn_A malate 98.8 1.1E-07 2.3E-12 100.5 15.1 248 20-347 59-346 (511)
32 cd00727 malate_synt_A Malate s 98.8 1.5E-07 3.2E-12 99.5 15.0 245 20-347 59-345 (511)
33 PRK09255 malate synthase; Vali 98.7 7E-07 1.5E-11 94.8 16.9 246 20-347 80-366 (531)
34 cd00480 malate_synt Malate syn 98.6 2.3E-06 4.9E-11 91.1 18.5 128 220-347 184-345 (511)
35 PF02896 PEP-utilizers_C: PEP- 98.4 3E-06 6.5E-11 84.4 12.7 134 202-347 119-278 (293)
36 PLN02626 malate synthase 97.9 3.8E-05 8.3E-10 81.5 9.9 125 222-347 213-372 (551)
37 PF02887 PK_C: Pyruvate kinase 97.7 9.6E-05 2.1E-09 63.5 6.4 41 376-416 72-117 (117)
38 PRK11061 fused phosphoenolpyru 97.5 0.00043 9.3E-09 77.3 9.8 118 219-347 549-692 (748)
39 TIGR01828 pyru_phos_dikin pyru 97.2 0.0026 5.6E-08 72.0 12.1 136 201-347 669-850 (856)
40 TIGR02751 PEPCase_arch phospho 97.0 0.0036 7.8E-08 66.5 9.7 110 220-329 122-266 (506)
41 COG1080 PtsA Phosphoenolpyruva 96.9 0.0043 9.4E-08 66.5 9.6 129 207-347 373-527 (574)
42 PRK09279 pyruvate phosphate di 96.9 0.0062 1.3E-07 69.0 11.1 143 194-347 666-856 (879)
43 PRK08649 inosine 5-monophospha 96.9 0.016 3.5E-07 59.7 13.1 116 214-347 148-285 (368)
44 COG3605 PtsP Signal transducti 96.2 0.052 1.1E-06 58.4 11.8 158 219-393 557-748 (756)
45 PRK13655 phosphoenolpyruvate c 96.1 0.023 4.9E-07 60.4 9.0 95 218-312 119-239 (494)
46 TIGR01304 IMP_DH_rel_2 IMP deh 96.1 0.06 1.3E-06 55.6 11.5 121 208-347 143-284 (369)
47 PF00478 IMPDH: IMP dehydrogen 95.8 0.16 3.5E-06 52.0 13.4 123 207-347 108-240 (352)
48 PRK00009 phosphoenolpyruvate c 95.8 0.045 9.8E-07 62.4 10.1 108 220-327 486-620 (911)
49 cd00381 IMPDH IMPDH: The catal 95.8 0.21 4.6E-06 50.6 13.8 123 206-346 93-225 (325)
50 TIGR01305 GMP_reduct_1 guanosi 95.3 0.26 5.7E-06 50.1 12.3 125 205-347 105-241 (343)
51 TIGR01302 IMP_dehydrog inosine 94.8 0.4 8.6E-06 50.8 12.9 124 205-347 222-356 (450)
52 PTZ00398 phosphoenolpyruvate c 94.7 0.2 4.3E-06 57.8 10.8 107 222-328 547-678 (974)
53 PTZ00314 inosine-5'-monophosph 94.4 0.75 1.6E-05 49.4 13.7 123 206-347 240-373 (495)
54 PLN02274 inosine-5'-monophosph 94.1 0.91 2E-05 48.9 13.7 124 205-347 246-380 (505)
55 TIGR01306 GMP_reduct_2 guanosi 93.8 0.59 1.3E-05 47.4 11.0 125 204-347 91-227 (321)
56 PRK05096 guanosine 5'-monophos 93.6 1.1 2.4E-05 45.7 12.3 125 205-347 106-242 (346)
57 PRK08883 ribulose-phosphate 3- 93.6 2.3 4.9E-05 40.8 14.1 151 196-369 58-217 (220)
58 COG0574 PpsA Phosphoenolpyruva 93.4 0.47 1E-05 53.3 10.5 113 222-347 596-723 (740)
59 TIGR00612 ispG_gcpE 1-hydroxy- 93.3 11 0.00023 38.6 18.8 175 217-409 44-268 (346)
60 PRK07107 inosine 5-monophospha 93.1 1.1 2.4E-05 48.2 12.3 119 209-347 244-381 (502)
61 PRK07807 inosine 5-monophospha 92.8 1.9 4.1E-05 46.2 13.4 126 204-346 224-358 (479)
62 PRK06843 inosine 5-monophospha 92.7 2.1 4.7E-05 44.8 13.3 123 206-347 152-285 (404)
63 PTZ00170 D-ribulose-5-phosphat 92.5 2.9 6.3E-05 40.2 13.1 154 195-369 64-223 (228)
64 cd00958 DhnA Class I fructose- 92.4 6 0.00013 37.7 15.2 147 202-370 16-178 (235)
65 PRK13125 trpA tryptophan synth 92.3 5.5 0.00012 38.5 14.9 113 212-347 94-214 (244)
66 TIGR03151 enACPred_II putative 92.1 3.8 8.3E-05 41.2 14.0 112 208-347 76-190 (307)
67 cd00429 RPE Ribulose-5-phospha 92.1 3.7 8E-05 37.9 13.1 133 211-363 72-210 (211)
68 PRK08745 ribulose-phosphate 3- 92.1 8.3 0.00018 37.1 15.7 150 199-370 65-222 (223)
69 PRK09722 allulose-6-phosphate 92.0 9.3 0.0002 37.0 15.9 154 197-370 60-222 (229)
70 PF04551 GcpE: GcpE protein; 92.0 3.9 8.5E-05 42.0 13.7 186 215-409 39-277 (359)
71 PLN02591 tryptophan synthase 91.9 6.2 0.00014 38.7 14.8 113 215-347 101-218 (250)
72 cd02940 DHPD_FMN Dihydropyrimi 91.8 2.9 6.2E-05 41.7 12.7 126 207-349 113-283 (299)
73 cd04740 DHOD_1B_like Dihydroor 91.6 8 0.00017 38.2 15.5 129 207-352 102-265 (296)
74 PRK08318 dihydropyrimidine deh 91.6 3.5 7.5E-05 43.1 13.5 124 207-347 113-282 (420)
75 COG0821 gcpE 1-hydroxy-2-methy 91.3 19 0.00041 36.8 18.0 177 217-409 46-270 (361)
76 PRK07565 dihydroorotate dehydr 91.1 6 0.00013 40.1 14.3 126 210-349 117-270 (334)
77 PRK05458 guanosine 5'-monophos 90.9 5.9 0.00013 40.4 13.9 129 205-351 95-234 (326)
78 cd04726 KGPDC_HPS 3-Keto-L-gul 90.9 10 0.00023 34.9 14.7 128 211-361 69-200 (202)
79 PF00311 PEPcase: Phosphoenolp 90.8 0.63 1.4E-05 52.7 7.5 106 221-326 364-496 (794)
80 PRK05581 ribulose-phosphate 3- 90.8 14 0.00031 34.4 16.0 145 204-367 69-218 (220)
81 cd07939 DRE_TIM_NifV Streptomy 90.7 17 0.00038 35.3 16.9 155 203-370 16-181 (259)
82 PRK05567 inosine 5'-monophosph 90.6 5.7 0.00012 42.5 14.2 122 208-347 229-360 (486)
83 COG2352 Ppc Phosphoenolpyruvat 90.4 0.64 1.4E-05 52.1 6.9 87 224-310 489-599 (910)
84 cd04730 NPD_like 2-Nitropropan 90.2 7.6 0.00016 36.7 13.4 113 209-347 70-185 (236)
85 PF14010 PEPcase_2: Phosphoeno 90.2 0.52 1.1E-05 50.2 5.7 146 219-372 119-303 (491)
86 CHL00200 trpA tryptophan synth 89.9 11 0.00024 37.2 14.5 115 215-347 114-231 (263)
87 PLN02334 ribulose-phosphate 3- 89.9 14 0.00031 35.2 15.0 154 195-370 64-225 (229)
88 PF00290 Trp_syntA: Tryptophan 89.8 15 0.00033 36.2 15.4 114 215-347 110-226 (259)
89 PRK13813 orotidine 5'-phosphat 89.7 7.3 0.00016 36.6 12.7 130 215-369 75-214 (215)
90 PRK13307 bifunctional formalde 88.8 8.4 0.00018 40.2 13.4 128 215-367 245-378 (391)
91 TIGR01163 rpe ribulose-phospha 88.5 16 0.00036 33.6 14.0 131 212-362 72-208 (210)
92 PRK00915 2-isopropylmalate syn 88.2 41 0.00089 36.3 18.6 156 204-371 23-192 (513)
93 PRK15452 putative protease; Pr 87.8 5.5 0.00012 42.2 11.5 113 206-349 10-143 (443)
94 PRK01130 N-acetylmannosamine-6 87.5 14 0.00031 34.8 13.2 135 208-367 77-219 (221)
95 PRK07695 transcriptional regul 87.4 15 0.00032 34.2 13.0 132 206-368 62-198 (201)
96 cd02810 DHOD_DHPD_FMN Dihydroo 87.3 13 0.00029 36.4 13.3 126 208-348 112-273 (289)
97 TIGR00262 trpA tryptophan synt 87.2 31 0.00068 33.7 16.7 113 215-347 110-227 (256)
98 cd04722 TIM_phosphate_binding 87.2 12 0.00026 33.2 11.9 113 215-347 79-199 (200)
99 cd07945 DRE_TIM_CMS Leptospira 86.9 20 0.00042 35.7 14.2 169 189-370 6-189 (280)
100 TIGR02660 nifV_homocitr homoci 86.9 20 0.00044 36.8 14.8 154 204-370 20-184 (365)
101 PRK07226 fructose-bisphosphate 86.8 18 0.00039 35.4 13.8 146 202-369 34-194 (267)
102 PRK07028 bifunctional hexulose 86.6 25 0.00055 36.8 15.6 137 211-369 73-212 (430)
103 cd03174 DRE_TIM_metallolyase D 86.1 32 0.0007 32.8 16.9 160 203-371 15-189 (265)
104 PRK04302 triosephosphate isome 86.0 32 0.00069 32.7 14.8 131 215-364 80-219 (223)
105 TIGR02090 LEU1_arch isopropylm 85.9 36 0.00079 35.0 16.1 154 204-370 19-183 (363)
106 TIGR00973 leuA_bact 2-isopropy 85.7 31 0.00068 37.1 16.0 157 204-370 20-188 (494)
107 PRK11858 aksA trans-homoaconit 85.7 45 0.00098 34.5 16.7 156 204-370 23-187 (378)
108 TIGR01303 IMP_DH_rel_1 IMP deh 85.5 11 0.00024 40.4 12.3 124 205-347 223-357 (475)
109 cd07944 DRE_TIM_HOA_like 4-hyd 85.4 39 0.00085 33.2 16.4 158 193-371 11-181 (266)
110 PRK00278 trpC indole-3-glycero 85.1 35 0.00075 33.5 14.8 130 211-364 125-257 (260)
111 PRK02290 3-dehydroquinate synt 84.8 21 0.00046 36.6 13.2 135 205-369 12-160 (344)
112 PF00478 IMPDH: IMP dehydrogen 84.5 2.1 4.6E-05 44.0 6.1 52 28-79 95-146 (352)
113 PRK00278 trpC indole-3-glycero 84.5 34 0.00074 33.5 14.4 113 207-349 70-189 (260)
114 cd04739 DHOD_like Dihydroorota 84.4 26 0.00057 35.4 14.0 121 209-347 114-266 (325)
115 PF00682 HMGL-like: HMGL-like 84.1 39 0.00084 32.0 14.8 159 204-372 11-181 (237)
116 cd00945 Aldolase_Class_I Class 83.6 33 0.00071 30.8 14.7 124 209-347 15-149 (201)
117 PRK02048 4-hydroxy-3-methylbut 83.6 29 0.00063 38.2 14.4 147 215-368 49-224 (611)
118 PRK09389 (R)-citramalate synth 83.4 51 0.0011 35.5 16.3 154 204-369 21-184 (488)
119 PRK00366 ispG 4-hydroxy-3-meth 83.2 60 0.0013 33.6 20.3 173 217-406 52-274 (360)
120 cd00958 DhnA Class I fructose- 83.1 5.7 0.00012 37.8 8.2 75 204-286 140-221 (235)
121 PRK06015 keto-hydroxyglutarate 83.0 9.3 0.0002 36.3 9.4 105 228-348 11-125 (201)
122 cd00331 IGPS Indole-3-glycerol 82.9 42 0.00091 31.5 14.8 125 211-361 86-215 (217)
123 PRK08005 epimerase; Validated 82.7 46 0.00099 31.8 14.0 143 198-363 60-207 (210)
124 cd04732 HisA HisA. Phosphorib 82.5 44 0.00095 31.5 14.0 129 208-358 84-230 (234)
125 PRK08091 ribulose-phosphate 3- 82.3 50 0.0011 32.0 15.0 145 199-366 71-226 (228)
126 cd00381 IMPDH IMPDH: The catal 82.2 2.8 6E-05 42.5 5.9 48 32-79 85-132 (325)
127 TIGR03128 RuMP_HxlA 3-hexulose 82.2 42 0.00091 31.0 15.8 135 211-366 68-205 (206)
128 PRK06512 thiamine-phosphate py 81.3 36 0.00079 32.6 13.0 129 215-369 82-214 (221)
129 TIGR00977 LeuA_rel 2-isopropyl 81.1 47 0.001 36.1 15.1 161 204-371 20-197 (526)
130 PLN02495 oxidoreductase, actin 81.1 46 0.00099 34.8 14.4 149 205-372 125-323 (385)
131 COG0826 Collagenase and relate 80.9 30 0.00065 35.6 12.9 129 205-370 12-159 (347)
132 PLN02746 hydroxymethylglutaryl 80.4 46 0.00099 34.3 14.0 168 189-370 55-239 (347)
133 PF01959 DHQS: 3-dehydroquinat 80.4 11 0.00024 38.8 9.3 133 209-369 15-169 (354)
134 PRK08227 autoinducer 2 aldolas 79.7 7.4 0.00016 38.5 7.8 138 215-368 102-247 (264)
135 PRK07259 dihydroorotate dehydr 79.4 59 0.0013 32.2 14.3 129 207-352 104-268 (301)
136 PRK13397 3-deoxy-7-phosphohept 79.4 46 0.001 32.7 13.1 90 233-348 66-157 (250)
137 PRK13210 putative L-xylulose 5 79.2 63 0.0014 31.2 15.6 144 210-362 20-199 (284)
138 PRK00694 4-hydroxy-3-methylbut 79.0 18 0.00038 39.6 10.8 148 215-371 53-228 (606)
139 TIGR01037 pyrD_sub1_fam dihydr 78.8 71 0.0015 31.6 16.1 113 220-349 118-265 (300)
140 PF01274 Malate_synthase: Mala 78.5 4.2 9.2E-05 44.0 6.1 126 220-347 203-364 (526)
141 TIGR01182 eda Entner-Doudoroff 78.1 16 0.00034 34.8 9.2 39 296-347 90-128 (204)
142 PRK15447 putative protease; Pr 78.1 39 0.00085 33.8 12.5 116 206-350 14-141 (301)
143 PRK13209 L-xylulose 5-phosphat 77.7 59 0.0013 31.4 13.5 128 210-349 25-187 (283)
144 cd00959 DeoC 2-deoxyribose-5-p 77.6 16 0.00036 34.2 9.2 143 202-368 12-172 (203)
145 TIGR03586 PseI pseudaminic aci 77.5 41 0.0009 34.3 12.6 60 267-346 104-166 (327)
146 PRK05718 keto-hydroxyglutarate 77.3 14 0.00031 35.2 8.7 107 224-346 18-134 (212)
147 PRK13111 trpA tryptophan synth 76.7 29 0.00063 34.1 10.9 113 214-347 111-228 (258)
148 PRK00043 thiE thiamine-phospha 76.7 39 0.00085 31.1 11.4 127 215-370 76-211 (212)
149 PF01791 DeoC: DeoC/LacD famil 76.7 13 0.00029 35.5 8.5 154 202-372 13-190 (236)
150 PF03437 BtpA: BtpA family; I 76.6 15 0.00033 36.1 8.8 72 217-297 169-250 (254)
151 TIGR01361 DAHP_synth_Bsub phos 76.3 49 0.0011 32.5 12.4 90 232-347 75-166 (260)
152 PRK05692 hydroxymethylglutaryl 75.9 88 0.0019 31.1 15.9 167 189-370 13-197 (287)
153 PLN02321 2-isopropylmalate syn 75.9 61 0.0013 36.1 14.2 160 204-370 105-282 (632)
154 TIGR03569 NeuB_NnaB N-acetylne 75.4 45 0.00097 34.1 12.2 50 273-342 110-161 (329)
155 PRK00507 deoxyribose-phosphate 75.4 59 0.0013 31.2 12.4 148 202-367 17-176 (221)
156 PF00834 Ribul_P_3_epim: Ribul 75.3 15 0.00032 34.8 8.1 77 196-278 57-133 (201)
157 TIGR01302 IMP_dehydrog inosine 75.2 7.7 0.00017 41.1 6.9 50 29-78 212-261 (450)
158 TIGR01949 AroFGH_arch predicte 75.0 59 0.0013 31.5 12.6 149 202-371 31-192 (258)
159 PF01645 Glu_synthase: Conserv 74.9 51 0.0011 34.2 12.5 150 173-347 136-303 (368)
160 PRK05096 guanosine 5'-monophos 74.8 6.5 0.00014 40.2 5.9 49 31-79 98-148 (346)
161 PF03102 NeuB: NeuB family; I 74.8 34 0.00073 33.4 10.7 99 231-357 54-154 (241)
162 cd04728 ThiG Thiazole synthase 74.7 80 0.0017 31.0 13.1 67 287-369 159-226 (248)
163 cd07940 DRE_TIM_IPMS 2-isoprop 74.6 88 0.0019 30.5 17.2 159 204-371 17-186 (268)
164 PRK13398 3-deoxy-7-phosphohept 74.5 59 0.0013 32.1 12.5 107 232-364 77-187 (266)
165 cd04726 KGPDC_HPS 3-Keto-L-gul 74.3 44 0.00096 30.6 11.1 116 205-347 11-133 (202)
166 TIGR01305 GMP_reduct_1 guanosi 74.3 6.8 0.00015 40.1 5.9 49 31-79 97-147 (343)
167 cd04729 NanE N-acetylmannosami 74.2 48 0.001 31.2 11.5 117 209-347 82-206 (219)
168 TIGR00007 phosphoribosylformim 73.4 45 0.00097 31.5 11.1 127 207-357 82-228 (230)
169 cd07948 DRE_TIM_HCS Saccharomy 73.1 98 0.0021 30.4 16.5 164 189-369 9-182 (262)
170 PRK12595 bifunctional 3-deoxy- 72.8 62 0.0014 33.4 12.6 89 233-347 169-259 (360)
171 PRK00208 thiG thiazole synthas 72.8 95 0.0021 30.6 13.1 52 306-369 174-226 (250)
172 PRK08227 autoinducer 2 aldolas 72.7 34 0.00073 33.9 10.2 110 266-393 48-172 (264)
173 PRK05286 dihydroorotate dehydr 72.6 52 0.0011 33.6 12.0 118 219-350 168-321 (344)
174 PRK06843 inosine 5-monophospha 72.5 6 0.00013 41.5 5.2 51 29-79 141-191 (404)
175 PF03060 NMO: Nitronate monoox 72.1 64 0.0014 32.6 12.4 113 209-347 103-219 (330)
176 cd00452 KDPG_aldolase KDPG and 71.7 84 0.0018 29.0 14.4 100 214-347 23-124 (190)
177 cd04724 Tryptophan_synthase_al 71.1 1E+02 0.0022 29.7 13.7 101 200-312 9-134 (242)
178 TIGR00126 deoC deoxyribose-pho 71.0 57 0.0012 31.1 11.1 143 202-369 13-174 (211)
179 PRK11840 bifunctional sulfur c 70.3 65 0.0014 32.9 11.8 78 275-368 221-299 (326)
180 COG0036 Rpe Pentose-5-phosphat 70.3 84 0.0018 30.4 11.9 133 209-367 74-217 (220)
181 cd02811 IDI-2_FMN Isopentenyl- 70.0 1.3E+02 0.0028 30.5 14.5 52 307-371 255-310 (326)
182 cd00331 IGPS Indole-3-glycerol 69.8 97 0.0021 29.0 14.8 130 205-369 29-168 (217)
183 PRK14057 epimerase; Provisiona 69.6 1.2E+02 0.0026 29.9 15.4 148 204-369 83-243 (254)
184 KOG3111 D-ribulose-5-phosphate 69.5 1.1E+02 0.0023 29.3 13.6 138 210-370 78-220 (224)
185 PLN02925 4-hydroxy-3-methylbut 69.2 38 0.00082 38.0 10.5 148 215-371 118-293 (733)
186 PTZ00314 inosine-5'-monophosph 69.0 11 0.00025 40.4 6.5 48 32-79 232-279 (495)
187 cd07941 DRE_TIM_LeuA3 Desulfob 68.9 1.2E+02 0.0026 29.7 15.8 161 204-370 17-193 (273)
188 PRK07998 gatY putative fructos 68.4 84 0.0018 31.5 12.0 113 251-370 75-198 (283)
189 PRK04452 acetyl-CoA decarbonyl 68.0 1.5E+02 0.0031 30.3 13.8 147 206-369 136-311 (319)
190 PRK05458 guanosine 5'-monophos 67.9 9.4 0.0002 38.9 5.3 46 34-79 90-137 (326)
191 cd00954 NAL N-Acetylneuraminic 67.8 59 0.0013 32.1 10.9 93 214-312 28-133 (288)
192 cd00377 ICL_PEPM Members of th 67.6 41 0.00089 32.6 9.5 108 215-347 92-226 (243)
193 TIGR01306 GMP_reduct_2 guanosi 67.2 11 0.00025 38.2 5.7 49 31-79 84-134 (321)
194 TIGR01037 pyrD_sub1_fam dihydr 66.9 1.4E+02 0.0029 29.5 15.7 145 190-347 6-189 (300)
195 TIGR00736 nifR3_rel_arch TIM-b 66.6 1.1E+02 0.0023 29.7 12.1 121 205-348 78-221 (231)
196 PRK06552 keto-hydroxyglutarate 66.6 93 0.002 29.7 11.6 106 224-346 16-135 (213)
197 PRK03620 5-dehydro-4-deoxygluc 66.4 68 0.0015 32.0 11.1 93 214-312 35-137 (303)
198 PRK08195 4-hyroxy-2-oxovalerat 66.0 1.6E+02 0.0035 30.0 16.2 146 205-370 23-186 (337)
199 TIGR00674 dapA dihydrodipicoli 65.8 66 0.0014 31.7 10.8 93 214-312 26-129 (285)
200 PRK07114 keto-hydroxyglutarate 65.3 52 0.0011 31.7 9.6 109 223-347 17-139 (222)
201 COG2225 AceB Malate synthase [ 65.0 13 0.00029 40.0 5.9 98 222-319 220-345 (545)
202 cd04738 DHOD_2_like Dihydrooro 64.9 1E+02 0.0022 31.1 12.2 119 220-350 160-312 (327)
203 PLN02274 inosine-5'-monophosph 64.7 16 0.00035 39.4 6.7 51 29-79 236-286 (505)
204 cd00405 PRAI Phosphoribosylant 64.4 1E+02 0.0022 28.6 11.3 119 207-351 7-131 (203)
205 cd03316 MR_like Mandelate race 64.0 44 0.00096 33.7 9.4 75 12-93 113-196 (357)
206 cd02809 alpha_hydroxyacid_oxid 64.0 1E+02 0.0022 30.6 11.8 107 215-348 137-257 (299)
207 PRK09250 fructose-bisphosphate 63.9 1.8E+02 0.004 30.0 13.6 95 205-312 89-197 (348)
208 PRK05567 inosine 5'-monophosph 63.6 22 0.00047 38.1 7.4 51 28-78 215-265 (486)
209 cd00408 DHDPS-like Dihydrodipi 63.0 80 0.0017 30.8 10.7 90 273-372 32-124 (281)
210 KOG2550 IMP dehydrogenase/GMP 62.9 48 0.001 35.0 9.2 174 205-406 249-437 (503)
211 cd04737 LOX_like_FMN L-Lactate 62.8 42 0.0009 34.6 8.9 91 231-347 209-305 (351)
212 PRK08417 dihydroorotase; Provi 62.8 1.9E+02 0.0041 29.8 14.5 106 199-314 39-151 (386)
213 cd00564 TMP_TenI Thiamine mono 62.7 1.1E+02 0.0025 27.2 12.0 119 215-363 67-194 (196)
214 PRK07028 bifunctional hexulose 62.7 1.5E+02 0.0033 31.0 13.4 130 195-347 4-138 (430)
215 cd04742 NPD_FabD 2-Nitropropan 62.5 1.7E+02 0.0036 31.0 13.4 120 210-347 86-248 (418)
216 PRK08385 nicotinate-nucleotide 62.0 39 0.00085 33.7 8.3 67 208-280 191-260 (278)
217 cd00954 NAL N-Acetylneuraminic 61.8 79 0.0017 31.2 10.5 37 334-370 90-126 (288)
218 PLN02495 oxidoreductase, actin 61.4 98 0.0021 32.4 11.4 55 283-348 159-215 (385)
219 PRK00865 glutamate racemase; P 61.1 88 0.0019 30.5 10.6 161 215-405 62-241 (261)
220 PF01081 Aldolase: KDPG and KH 61.1 22 0.00047 33.6 6.0 46 294-353 88-134 (196)
221 PRK04180 pyridoxal biosynthesi 61.0 1.6E+02 0.0034 29.7 12.3 113 226-372 57-172 (293)
222 TIGR00259 thylakoid_BtpA membr 60.9 62 0.0013 31.9 9.4 90 204-298 154-251 (257)
223 COG1465 Predicted alternative 60.9 2E+02 0.0042 29.3 13.2 135 206-372 15-194 (376)
224 cd00408 DHDPS-like Dihydrodipi 60.6 1E+02 0.0023 29.9 11.1 93 214-312 25-128 (281)
225 PF01136 Peptidase_U32: Peptid 60.0 20 0.00043 34.0 5.7 42 41-82 157-198 (233)
226 PF00899 ThiF: ThiF family; I 59.8 65 0.0014 27.7 8.5 65 235-312 58-122 (135)
227 PRK09140 2-dehydro-3-deoxy-6-p 59.5 1.6E+02 0.0035 27.8 13.0 125 206-366 21-147 (206)
228 cd00950 DHDPS Dihydrodipicolin 59.5 99 0.0022 30.2 10.7 94 214-312 28-131 (284)
229 TIGR00343 pyridoxal 5'-phospha 59.2 2E+02 0.0044 28.9 12.6 112 227-372 51-165 (287)
230 cd04740 DHOD_1B_like Dihydroor 59.0 1.9E+02 0.0041 28.4 14.1 86 250-347 89-186 (296)
231 COG0119 LeuA Isopropylmalate/h 58.9 1.6E+02 0.0035 31.0 12.6 158 204-371 21-189 (409)
232 PF05690 ThiG: Thiazole biosyn 58.8 22 0.00048 34.7 5.7 78 275-368 147-225 (247)
233 TIGR00695 uxuA mannonate dehyd 58.8 89 0.0019 32.8 10.6 84 207-312 11-101 (394)
234 KOG2550 IMP dehydrogenase/GMP 58.4 35 0.00075 36.0 7.3 46 34-79 244-289 (503)
235 PRK09250 fructose-bisphosphate 57.9 2.2E+02 0.0047 29.5 13.0 85 307-393 125-231 (348)
236 cd02808 GltS_FMN Glutamate syn 57.3 1.7E+02 0.0036 30.5 12.4 117 216-347 179-314 (392)
237 PRK04147 N-acetylneuraminate l 57.0 1.5E+02 0.0033 29.3 11.6 93 214-312 31-135 (293)
238 PRK13396 3-deoxy-7-phosphohept 56.9 2E+02 0.0044 29.7 12.7 99 233-357 152-255 (352)
239 cd08556 GDPD Glycerophosphodie 56.7 1.1E+02 0.0025 27.1 9.9 39 295-346 148-187 (189)
240 cd07938 DRE_TIM_HMGL 3-hydroxy 56.3 2.1E+02 0.0046 28.2 15.1 159 204-370 17-191 (274)
241 TIGR00736 nifR3_rel_arch TIM-b 56.1 44 0.00096 32.4 7.4 75 208-288 149-229 (231)
242 TIGR01163 rpe ribulose-phospha 56.1 1.6E+02 0.0035 26.9 14.1 135 210-371 15-160 (210)
243 PF04055 Radical_SAM: Radical 55.8 1E+02 0.0023 26.0 9.2 57 29-86 76-142 (166)
244 PF09370 TIM-br_sig_trns: TIM- 55.7 38 0.00083 33.6 6.9 62 33-96 151-223 (268)
245 PRK00311 panB 3-methyl-2-oxobu 55.6 2.2E+02 0.0047 28.2 13.8 144 204-371 20-196 (264)
246 TIGR02708 L_lactate_ox L-lacta 55.1 97 0.0021 32.2 10.1 92 231-349 216-314 (367)
247 cd08567 GDPD_SpGDE_like Glycer 54.9 98 0.0021 29.5 9.7 41 293-346 217-258 (263)
248 PLN02417 dihydrodipicolinate s 54.8 1.2E+02 0.0027 29.8 10.5 91 214-312 29-130 (280)
249 TIGR02814 pfaD_fam PfaD family 54.6 3E+02 0.0064 29.5 13.8 124 209-347 90-253 (444)
250 PF01079 Hint: Hint module; I 54.6 79 0.0017 30.4 8.8 43 108-150 69-114 (217)
251 PRK07428 nicotinate-nucleotide 54.3 69 0.0015 32.1 8.6 66 207-280 204-272 (288)
252 PRK05283 deoxyribose-phosphate 53.7 1.4E+02 0.0031 29.4 10.5 148 202-369 21-189 (257)
253 cd00952 CHBPH_aldolase Trans-o 53.7 1.5E+02 0.0032 29.7 11.0 37 335-371 98-134 (309)
254 PRK07107 inosine 5-monophospha 53.5 22 0.00047 38.4 5.3 53 26-79 228-280 (502)
255 PRK10558 alpha-dehydro-beta-de 53.4 1.1E+02 0.0024 29.9 9.8 87 238-347 10-98 (256)
256 cd08205 RuBisCO_IV_RLP Ribulos 53.1 1.9E+02 0.0041 30.0 11.9 149 205-369 144-307 (367)
257 TIGR00693 thiE thiamine-phosph 53.1 1.8E+02 0.0039 26.5 11.3 119 215-362 68-195 (196)
258 PRK06852 aldolase; Validated 53.0 72 0.0016 32.3 8.5 86 306-393 91-202 (304)
259 PRK08185 hypothetical protein; 52.9 2.5E+02 0.0054 28.1 14.0 119 249-371 67-198 (283)
260 TIGR00674 dapA dihydrodipicoli 52.6 1.2E+02 0.0025 29.9 10.0 91 273-372 33-125 (285)
261 TIGR00067 glut_race glutamate 52.5 2.3E+02 0.005 27.5 12.1 159 209-396 50-223 (251)
262 PRK09856 fructoselysine 3-epim 52.3 2.2E+02 0.0048 27.2 15.5 179 210-399 17-244 (275)
263 PRK02615 thiamine-phosphate py 52.2 2.7E+02 0.0058 28.8 12.7 131 207-369 207-344 (347)
264 cd00951 KDGDH 5-dehydro-4-deox 52.2 1.6E+02 0.0035 29.1 10.9 91 214-312 28-130 (289)
265 PF01729 QRPTase_C: Quinolinat 52.2 37 0.0008 31.3 5.9 64 209-280 90-156 (169)
266 TIGR01949 AroFGH_arch predicte 51.7 63 0.0014 31.4 7.8 62 28-89 69-141 (258)
267 cd04501 SGNH_hydrolase_like_4 50.8 46 0.001 29.6 6.3 52 261-312 46-101 (183)
268 TIGR00739 yajC preprotein tran 50.8 29 0.00063 28.2 4.4 41 136-185 32-72 (84)
269 COG2945 Predicted hydrolase of 50.5 12 0.00026 35.6 2.4 35 45-79 52-98 (210)
270 COG0800 Eda 2-keto-3-deoxy-6-p 50.4 1.9E+02 0.0042 27.7 10.5 110 223-351 15-138 (211)
271 PRK10812 putative DNAse; Provi 50.3 2.5E+02 0.0054 27.5 11.8 104 207-313 20-131 (265)
272 PRK04147 N-acetylneuraminate l 50.3 2.1E+02 0.0046 28.2 11.4 90 273-372 39-131 (293)
273 PF03932 CutC: CutC family; I 49.9 71 0.0015 30.3 7.6 90 304-406 47-149 (201)
274 PRK03170 dihydrodipicolinate s 49.8 1.6E+02 0.0034 29.0 10.4 93 214-312 29-132 (292)
275 PF00701 DHDPS: Dihydrodipicol 49.7 2.2E+02 0.0048 27.9 11.4 97 266-372 28-128 (289)
276 cd00950 DHDPS Dihydrodipicolin 49.6 1.6E+02 0.0035 28.7 10.4 90 273-372 35-127 (284)
277 cd04727 pdxS PdxS is a subunit 49.4 2.9E+02 0.0063 27.8 13.0 124 216-373 24-164 (283)
278 cd08210 RLP_RrRLP Ribulose bis 49.2 3.2E+02 0.007 28.3 13.1 150 203-369 137-303 (364)
279 PRK14024 phosphoribosyl isomer 49.0 2.5E+02 0.0054 26.9 13.9 134 207-360 85-235 (241)
280 cd04723 HisA_HisF Phosphoribos 49.0 2.5E+02 0.0054 26.9 12.0 129 208-360 89-231 (233)
281 TIGR00737 nifR3_yhdG putative 48.9 2.9E+02 0.0063 27.6 12.6 116 215-348 83-223 (319)
282 TIGR03239 GarL 2-dehydro-3-deo 48.5 1.4E+02 0.0031 29.0 9.7 87 238-347 3-91 (249)
283 PLN02826 dihydroorotate dehydr 48.5 3.5E+02 0.0076 28.5 17.7 86 250-347 262-370 (409)
284 cd04724 Tryptophan_synthase_al 48.1 2.5E+02 0.0055 27.0 11.3 113 215-347 99-215 (242)
285 TIGR02311 HpaI 2,4-dihydroxyhe 48.1 1.4E+02 0.0029 29.1 9.4 87 238-347 3-91 (249)
286 TIGR01859 fruc_bis_ald_ fructo 48.0 2.9E+02 0.0064 27.4 14.3 118 251-372 75-201 (282)
287 TIGR01303 IMP_DH_rel_1 IMP deh 47.5 29 0.00063 37.2 5.0 51 29-79 213-263 (475)
288 TIGR02313 HpaI-NOT-DapA 2,4-di 47.5 2.1E+02 0.0045 28.4 10.9 90 273-372 35-128 (294)
289 TIGR00875 fsa_talC_mipB fructo 47.5 37 0.0008 32.5 5.3 38 215-255 117-162 (213)
290 TIGR00683 nanA N-acetylneurami 47.4 2.9E+02 0.0064 27.3 12.2 93 214-312 28-133 (290)
291 PRK06806 fructose-bisphosphate 47.1 58 0.0013 32.4 6.8 55 31-86 76-130 (281)
292 COG0826 Collagenase and relate 46.7 82 0.0018 32.4 8.0 83 261-347 14-99 (347)
293 PRK05848 nicotinate-nucleotide 46.7 94 0.002 30.9 8.2 65 208-280 191-258 (273)
294 PRK12344 putative alpha-isopro 46.6 4.2E+02 0.0091 28.8 17.5 160 204-370 24-200 (524)
295 TIGR02320 PEP_mutase phosphoen 46.5 94 0.002 31.1 8.2 64 215-279 100-189 (285)
296 PRK05742 nicotinate-nucleotide 46.5 90 0.0019 31.1 8.0 72 195-280 188-262 (277)
297 PLN02979 glycolate oxidase 46.3 1.4E+02 0.0029 31.2 9.4 94 230-348 210-308 (366)
298 cd03332 LMO_FMN L-Lactate 2-mo 45.9 1.5E+02 0.0031 31.1 9.7 89 231-347 241-337 (383)
299 PF07521 RMMBL: RNA-metabolisi 45.7 13 0.00029 26.2 1.5 24 53-76 6-30 (43)
300 KOG3974 Predicted sugar kinase 45.6 1.6E+02 0.0034 29.5 9.2 85 216-312 53-137 (306)
301 cd02911 arch_FMN Archeal FMN-b 45.4 2.6E+02 0.0056 26.9 10.8 32 306-348 190-221 (233)
302 cd02922 FCB2_FMN Flavocytochro 45.4 2.4E+02 0.0051 29.0 11.1 94 229-347 199-300 (344)
303 cd00952 CHBPH_aldolase Trans-o 45.3 3.3E+02 0.0071 27.2 12.3 93 214-312 36-140 (309)
304 cd00945 Aldolase_Class_I Class 45.1 2.2E+02 0.0049 25.3 12.3 89 307-405 48-151 (201)
305 TIGR03249 KdgD 5-dehydro-4-deo 45.1 2.2E+02 0.0047 28.2 10.6 91 214-312 33-135 (296)
306 cd01485 E1-1_like Ubiquitin ac 45.0 1.4E+02 0.0031 27.8 8.8 65 236-312 78-143 (198)
307 COG0167 PyrD Dihydroorotate de 45.0 3.5E+02 0.0076 27.5 15.8 159 205-382 107-305 (310)
308 PF07679 I-set: Immunoglobulin 44.8 66 0.0014 24.8 5.6 71 106-183 8-79 (90)
309 cd02932 OYE_YqiM_FMN Old yello 44.3 3.2E+02 0.007 27.5 11.9 128 203-348 143-321 (336)
310 KOG4175 Tryptophan synthase al 44.0 1.5E+02 0.0032 28.6 8.5 125 201-347 105-235 (268)
311 TIGR02356 adenyl_thiF thiazole 43.7 1.3E+02 0.0029 28.0 8.4 64 236-312 78-141 (202)
312 COG1892 Phosphoenolpyruvate ca 43.6 56 0.0012 34.7 6.2 92 219-310 123-245 (488)
313 PF02662 FlpD: Methyl-viologen 43.1 1.1E+02 0.0025 26.5 7.3 30 321-350 33-62 (124)
314 TIGR00742 yjbN tRNA dihydrouri 43.0 56 0.0012 33.1 6.1 64 214-284 148-228 (318)
315 COG1646 Predicted phosphate-bi 42.7 67 0.0015 31.3 6.2 88 254-367 19-119 (240)
316 cd02801 DUS_like_FMN Dihydrour 42.7 2.8E+02 0.0061 25.7 13.4 115 215-348 75-214 (231)
317 PRK03170 dihydrodipicolinate s 42.5 2E+02 0.0044 28.2 9.9 38 335-372 91-128 (292)
318 TIGR01108 oadA oxaloacetate de 42.1 3.5E+02 0.0076 29.9 12.4 150 203-370 17-191 (582)
319 TIGR03217 4OH_2_O_val_ald 4-hy 41.9 3.9E+02 0.0085 27.2 14.6 148 204-371 21-186 (333)
320 cd02808 GltS_FMN Glutamate syn 41.8 77 0.0017 33.0 7.0 93 208-314 226-341 (392)
321 PRK07455 keto-hydroxyglutarate 41.6 2.9E+02 0.0063 25.6 10.8 123 206-370 23-150 (187)
322 COG0352 ThiE Thiamine monophos 41.4 3.2E+02 0.007 26.1 11.4 128 211-369 73-208 (211)
323 COG0274 DeoC Deoxyribose-phosp 41.4 1.9E+02 0.0042 28.0 9.1 150 201-367 18-180 (228)
324 PRK06512 thiamine-phosphate py 41.3 2.1E+02 0.0046 27.3 9.5 44 43-86 29-73 (221)
325 PF04028 DUF374: Domain of unk 41.1 1.2E+02 0.0026 24.1 6.5 54 38-96 17-72 (74)
326 PF01261 AP_endonuc_2: Xylose 40.9 98 0.0021 27.7 6.9 115 215-337 3-154 (213)
327 COG2022 ThiG Uncharacterized e 40.9 71 0.0015 31.3 6.0 50 305-366 180-230 (262)
328 PRK07807 inosine 5-monophospha 40.9 42 0.0009 36.1 5.0 47 33-79 219-265 (479)
329 PRK12290 thiE thiamine-phospha 40.7 4.1E+02 0.0089 28.4 12.1 138 207-369 267-414 (437)
330 TIGR02355 moeB molybdopterin s 40.7 1.6E+02 0.0035 28.4 8.7 64 236-312 81-144 (240)
331 TIGR00259 thylakoid_BtpA membr 40.4 3.1E+02 0.0067 27.1 10.6 94 209-314 92-208 (257)
332 COG0042 tRNA-dihydrouridine sy 40.3 64 0.0014 32.8 6.0 68 214-286 159-235 (323)
333 cd07943 DRE_TIM_HOA 4-hydroxy- 40.3 3.5E+02 0.0076 26.2 13.6 148 205-371 20-184 (263)
334 PRK07709 fructose-bisphosphate 40.3 3.9E+02 0.0085 26.7 14.3 116 251-371 78-203 (285)
335 cd03320 OSBS o-Succinylbenzoat 40.2 1E+02 0.0023 29.8 7.3 62 29-93 72-134 (263)
336 COG1879 RbsB ABC-type sugar tr 40.1 50 0.0011 32.5 5.2 40 263-312 81-121 (322)
337 PF01487 DHquinase_I: Type I 3 40.0 1.4E+02 0.0031 28.0 8.1 73 28-100 112-191 (224)
338 TIGR00381 cdhD CO dehydrogenas 40.0 4.7E+02 0.01 27.5 13.9 151 206-370 200-373 (389)
339 cd06557 KPHMT-like Ketopantoat 40.0 3.7E+02 0.0081 26.4 14.1 144 204-371 17-193 (254)
340 PRK07315 fructose-bisphosphate 39.4 4.1E+02 0.0088 26.6 11.9 116 250-371 77-201 (293)
341 PRK07695 transcriptional regul 39.4 1.1E+02 0.0024 28.3 7.1 34 45-78 19-52 (201)
342 PF00701 DHDPS: Dihydrodipicol 39.2 3.8E+02 0.0081 26.2 11.2 93 214-312 29-132 (289)
343 TIGR01093 aroD 3-dehydroquinat 39.1 1.1E+02 0.0025 29.0 7.3 73 28-100 117-196 (228)
344 TIGR00693 thiE thiamine-phosph 39.1 1.1E+02 0.0024 27.9 7.0 45 43-87 16-60 (196)
345 COG0159 TrpA Tryptophan syntha 38.9 4.1E+02 0.0088 26.5 15.4 112 215-347 117-233 (265)
346 cd00564 TMP_TenI Thiamine mono 38.9 1.1E+02 0.0025 27.2 7.0 44 43-86 15-58 (196)
347 PRK12656 fructose-6-phosphate 38.9 80 0.0017 30.5 6.1 74 215-327 121-204 (222)
348 cd01573 modD_like ModD; Quinol 38.7 1.6E+02 0.0035 29.1 8.4 65 208-280 192-259 (272)
349 PRK10128 2-keto-3-deoxy-L-rham 38.7 2.7E+02 0.0058 27.6 9.9 87 238-347 9-97 (267)
350 PRK07315 fructose-bisphosphate 38.5 90 0.002 31.3 6.7 55 31-87 79-133 (293)
351 cd00757 ThiF_MoeB_HesA_family 38.4 1.9E+02 0.004 27.5 8.6 78 235-325 77-156 (228)
352 PRK05198 2-dehydro-3-deoxyphos 38.2 3.4E+02 0.0075 27.0 10.4 131 198-346 79-228 (264)
353 cd02803 OYE_like_FMN_family Ol 38.0 4.1E+02 0.0089 26.3 13.3 130 202-348 129-312 (327)
354 PLN03228 methylthioalkylmalate 38.0 5.6E+02 0.012 27.8 15.1 167 189-370 93-281 (503)
355 cd01492 Aos1_SUMO Ubiquitin ac 37.9 2.1E+02 0.0045 26.7 8.7 64 235-312 77-140 (197)
356 COG0329 DapA Dihydrodipicolina 37.9 4.3E+02 0.0092 26.4 11.4 93 214-312 32-135 (299)
357 PF00677 Lum_binding: Lumazine 37.7 1E+02 0.0023 24.8 5.8 41 130-180 21-62 (85)
358 smart00729 Elp3 Elongator prot 37.5 2.6E+02 0.0057 24.6 9.1 44 38-81 95-147 (216)
359 PRK12331 oxaloacetate decarbox 37.4 5.4E+02 0.012 27.5 12.6 153 203-371 22-197 (448)
360 PRK02261 methylaspartate mutas 37.3 1.1E+02 0.0024 26.9 6.4 35 212-246 46-82 (137)
361 PRK09195 gatY tagatose-bisphos 37.3 4.4E+02 0.0095 26.4 13.8 146 235-388 63-225 (284)
362 PRK06801 hypothetical protein; 37.2 4.4E+02 0.0095 26.4 14.7 118 250-371 74-203 (286)
363 PRK05437 isopentenyl pyrophosp 37.2 4.8E+02 0.01 26.8 14.0 161 197-372 125-318 (352)
364 CHL00162 thiG thiamin biosynth 37.2 61 0.0013 32.1 5.0 49 306-366 188-237 (267)
365 PRK00043 thiE thiamine-phospha 37.1 1.2E+02 0.0026 27.8 7.0 44 43-86 24-67 (212)
366 PRK05886 yajC preprotein trans 37.1 60 0.0013 27.9 4.4 41 136-185 33-73 (109)
367 PRK11750 gltB glutamate syntha 36.9 84 0.0018 38.3 7.0 149 173-346 929-1095(1485)
368 PLN02535 glycolate oxidase 36.8 74 0.0016 33.0 5.9 90 210-309 235-343 (364)
369 PRK02714 O-succinylbenzoate sy 36.7 1E+02 0.0022 31.0 6.8 62 29-93 109-170 (320)
370 PRK08649 inosine 5-monophospha 36.7 3.5E+02 0.0077 28.0 10.9 85 251-349 132-217 (368)
371 PF09664 DUF2399: Protein of u 36.6 16 0.00034 33.1 0.9 58 5-70 21-79 (152)
372 PRK05690 molybdopterin biosynt 36.3 1.9E+02 0.0042 27.9 8.4 64 236-312 89-152 (245)
373 COG2870 RfaE ADP-heptose synth 36.3 4.2E+02 0.009 28.3 11.1 89 217-312 61-176 (467)
374 cd04736 MDH_FMN Mandelate dehy 36.2 2.8E+02 0.006 28.8 9.9 35 304-350 286-321 (361)
375 PRK05581 ribulose-phosphate 3- 36.2 3.5E+02 0.0076 24.9 12.9 131 210-370 20-164 (220)
376 cd01822 Lysophospholipase_L1_l 36.1 1.2E+02 0.0025 26.6 6.5 52 261-312 51-106 (177)
377 cd08563 GDPD_TtGDE_like Glycer 36.1 2.3E+02 0.0049 26.6 8.8 39 295-346 188-227 (230)
378 PRK15447 putative protease; Pr 35.9 2.1E+02 0.0046 28.5 8.9 66 273-347 29-95 (301)
379 cd08579 GDPD_memb_like Glycero 35.9 3E+02 0.0064 25.6 9.5 41 293-346 176-217 (220)
380 cd01572 QPRTase Quinolinate ph 35.9 1.2E+02 0.0025 30.0 6.9 63 207-280 190-255 (268)
381 cd08564 GDPD_GsGDE_like Glycer 35.9 4.1E+02 0.0089 25.6 11.5 54 294-363 210-264 (265)
382 PRK02083 imidazole glycerol ph 35.8 4E+02 0.0087 25.5 14.5 129 208-360 85-240 (253)
383 PRK07226 fructose-bisphosphate 35.6 1.2E+02 0.0025 29.7 6.9 49 43-91 96-146 (267)
384 cd02069 methionine_synthase_B1 35.6 1.1E+02 0.0024 29.0 6.5 43 210-254 129-173 (213)
385 cd01487 E1_ThiF_like E1_ThiF_l 35.4 2.2E+02 0.0047 26.0 8.2 65 235-312 54-119 (174)
386 PRK07535 methyltetrahydrofolat 35.4 82 0.0018 31.0 5.7 54 43-98 28-81 (261)
387 cd00953 KDG_aldolase KDG (2-ke 35.4 4.4E+02 0.0095 25.8 11.5 90 214-312 27-126 (279)
388 cd00019 AP2Ec AP endonuclease 35.2 2.1E+02 0.0046 27.5 8.7 118 211-337 15-165 (279)
389 cd02809 alpha_hydroxyacid_oxid 35.2 94 0.002 30.9 6.2 64 210-283 184-260 (299)
390 COG0084 TatD Mg-dependent DNas 35.0 3.2E+02 0.0069 26.9 9.8 105 206-313 16-132 (256)
391 PRK15108 biotin synthase; Prov 35.0 1E+02 0.0022 31.4 6.6 30 30-61 125-154 (345)
392 TIGR01768 GGGP-family geranylg 34.9 1.1E+02 0.0024 29.6 6.3 63 261-347 15-78 (223)
393 TIGR02708 L_lactate_ox L-lacta 34.5 1.3E+02 0.0028 31.3 7.2 96 209-311 239-350 (367)
394 PRK09140 2-dehydro-3-deoxy-6-p 34.5 4E+02 0.0087 25.1 12.3 108 209-349 73-181 (206)
395 TIGR02679 conserved hypothetic 34.5 21 0.00045 37.3 1.4 66 5-78 253-320 (385)
396 PF01180 DHO_dh: Dihydroorotat 34.3 2.7E+02 0.0058 27.4 9.3 117 217-348 121-274 (295)
397 COG0069 GltB Glutamate synthas 34.2 1.9E+02 0.0041 31.3 8.5 151 172-347 235-403 (485)
398 cd00957 Transaldolase_TalAB Tr 34.2 1.2E+02 0.0025 30.9 6.7 21 305-325 234-256 (313)
399 PRK07896 nicotinate-nucleotide 34.2 1E+02 0.0022 30.9 6.3 64 209-280 209-275 (289)
400 PRK00230 orotidine 5'-phosphat 34.0 4.2E+02 0.0092 25.2 13.7 39 330-368 190-228 (230)
401 PF11965 DUF3479: Domain of un 34.0 93 0.002 28.6 5.5 96 193-301 27-125 (164)
402 COG0646 MetH Methionine syntha 33.7 1.9E+02 0.0041 29.3 7.9 63 28-91 113-193 (311)
403 PRK00139 murE UDP-N-acetylmura 33.7 4.5E+02 0.0098 27.6 11.4 67 338-414 374-440 (460)
404 TIGR01036 pyrD_sub2 dihydrooro 33.6 4.8E+02 0.01 26.5 11.2 118 220-349 166-319 (335)
405 PRK08673 3-deoxy-7-phosphohept 33.5 5.1E+02 0.011 26.6 11.3 107 232-364 143-253 (335)
406 cd07947 DRE_TIM_Re_CS Clostrid 33.3 4.9E+02 0.011 25.8 14.3 149 205-369 19-198 (279)
407 PRK15452 putative protease; Pr 33.3 81 0.0017 33.6 5.6 41 42-82 270-310 (443)
408 cd02911 arch_FMN Archeal FMN-b 33.1 1.7E+02 0.0037 28.1 7.4 65 208-281 153-222 (233)
409 COG1862 YajC Preprotein transl 33.0 71 0.0015 26.9 4.2 42 135-185 37-78 (97)
410 PRK08185 hypothetical protein; 32.9 1.4E+02 0.003 29.9 7.0 57 30-87 69-125 (283)
411 cd05845 Ig2_L1-CAM_like Second 32.7 2.1E+02 0.0045 23.7 7.0 70 106-183 11-82 (95)
412 PF03644 Glyco_hydro_85: Glyco 32.6 77 0.0017 32.0 5.1 73 298-372 46-133 (311)
413 PRK01362 putative translaldola 32.6 82 0.0018 30.2 5.1 19 215-234 117-135 (214)
414 PRK12346 transaldolase A; Prov 32.4 1.3E+02 0.0027 30.7 6.6 19 215-234 165-183 (316)
415 cd03327 MR_like_2 Mandelate ra 32.3 2.4E+02 0.0051 28.6 8.7 79 12-94 95-179 (341)
416 PF00150 Cellulase: Cellulase 32.2 1E+02 0.0022 29.3 5.7 54 41-96 22-85 (281)
417 PF06953 ArsD: Arsenical resis 32.2 1.4E+02 0.003 26.2 6.0 25 45-69 32-56 (123)
418 TIGR03609 S_layer_CsaB polysac 32.1 2.6E+02 0.0057 27.2 8.8 71 270-346 62-133 (298)
419 PRK10425 DNase TatD; Provision 32.0 4.9E+02 0.011 25.3 11.7 103 207-313 15-128 (258)
420 COG1648 CysG Siroheme synthase 31.9 4.5E+02 0.0098 24.9 10.5 114 217-368 32-145 (210)
421 PF04551 GcpE: GcpE protein; 31.8 63 0.0014 33.4 4.3 50 42-94 33-82 (359)
422 PRK08072 nicotinate-nucleotide 31.7 1.8E+02 0.0039 28.9 7.5 65 205-280 194-261 (277)
423 TIGR01859 fruc_bis_ald_ fructo 31.7 1.5E+02 0.0033 29.5 7.0 55 30-85 75-129 (282)
424 TIGR02313 HpaI-NOT-DapA 2,4-di 31.7 5.2E+02 0.011 25.6 11.9 93 214-312 28-132 (294)
425 PRK08195 4-hyroxy-2-oxovalerat 31.6 1.5E+02 0.0033 30.2 7.1 47 28-74 76-122 (337)
426 COG0051 RpsJ Ribosomal protein 31.4 85 0.0018 26.8 4.4 38 54-97 3-40 (104)
427 TIGR00683 nanA N-acetylneurami 31.4 5E+02 0.011 25.6 10.7 89 273-370 36-126 (290)
428 COG4043 Preprotein translocase 31.4 67 0.0015 27.3 3.7 26 133-163 26-51 (111)
429 PF02581 TMP-TENI: Thiamine mo 31.2 1.7E+02 0.0036 26.7 6.8 45 42-86 14-58 (180)
430 cd00959 DeoC 2-deoxyribose-5-p 31.1 2.1E+02 0.0046 26.6 7.6 78 324-406 66-154 (203)
431 PRK10017 colanic acid biosynth 31.0 2.3E+02 0.005 29.9 8.6 72 263-346 108-182 (426)
432 PRK10737 FKBP-type peptidyl-pr 30.9 1.2E+02 0.0026 28.7 5.8 83 109-201 51-139 (196)
433 PRK02048 4-hydroxy-3-methylbut 30.9 67 0.0015 35.5 4.6 50 42-94 43-92 (611)
434 PRK13585 1-(5-phosphoribosyl)- 30.9 4.6E+02 0.01 24.7 14.2 128 207-358 86-233 (241)
435 PLN02493 probable peroxisomal 30.8 3.4E+02 0.0073 28.3 9.5 86 231-347 212-308 (367)
436 PLN03033 2-dehydro-3-deoxyphos 30.8 1.4E+02 0.0031 30.0 6.5 119 199-346 110-239 (290)
437 cd02922 FCB2_FMN Flavocytochro 30.7 2E+02 0.0043 29.6 7.8 94 209-309 224-336 (344)
438 PRK04165 acetyl-CoA decarbonyl 30.5 5.1E+02 0.011 27.8 11.0 139 206-359 162-309 (450)
439 cd02071 MM_CoA_mut_B12_BD meth 30.3 1.4E+02 0.0031 25.4 5.8 41 214-255 44-86 (122)
440 cd02812 PcrB_like PcrB_like pr 30.2 1.2E+02 0.0025 29.3 5.6 61 264-347 15-77 (219)
441 PRK12857 fructose-1,6-bisphosp 30.2 5.7E+02 0.012 25.5 13.5 146 235-388 63-225 (284)
442 PRK14040 oxaloacetate decarbox 29.8 8E+02 0.017 27.2 13.1 149 203-371 23-198 (593)
443 PRK07565 dihydroorotate dehydr 29.8 1.5E+02 0.0032 30.0 6.7 34 30-63 102-137 (334)
444 TIGR02317 prpB methylisocitrat 29.8 5.8E+02 0.013 25.5 10.8 108 209-332 91-220 (285)
445 cd04737 LOX_like_FMN L-Lactate 29.7 2.2E+02 0.0048 29.3 8.0 93 210-309 233-341 (351)
446 PRK08610 fructose-bisphosphate 29.6 5.9E+02 0.013 25.5 14.1 148 235-388 64-226 (286)
447 PRK08644 thiamine biosynthesis 29.5 3.3E+02 0.0071 25.7 8.7 63 237-312 85-148 (212)
448 PLN02417 dihydrodipicolinate s 29.3 5.6E+02 0.012 25.1 10.9 37 334-370 90-126 (280)
449 cd02070 corrinoid_protein_B12- 29.2 1.7E+02 0.0037 27.2 6.6 44 211-254 124-169 (201)
450 PF00205 TPP_enzyme_M: Thiamin 29.1 96 0.0021 26.6 4.6 55 294-348 26-85 (137)
451 PRK07259 dihydroorotate dehydr 29.1 5.6E+02 0.012 25.2 11.1 83 251-347 92-189 (301)
452 TIGR01858 tag_bisphos_ald clas 29.0 6E+02 0.013 25.4 13.9 144 235-388 61-223 (282)
453 TIGR00196 yjeF_cterm yjeF C-te 28.7 83 0.0018 30.6 4.5 83 209-312 42-124 (272)
454 cd02067 B12-binding B12 bindin 28.6 1.8E+02 0.0038 24.3 6.0 33 214-246 44-78 (119)
455 cd05565 PTS_IIB_lactose PTS_II 28.6 1.9E+02 0.0041 24.3 6.0 67 229-312 11-77 (99)
456 cd00429 RPE Ribulose-5-phospha 28.5 4.5E+02 0.0097 23.8 15.1 129 214-371 19-161 (211)
457 PF07905 PucR: Purine cataboli 28.5 2.1E+02 0.0046 24.4 6.6 47 273-338 73-119 (123)
458 PRK13982 bifunctional SbtC-lik 28.5 7.8E+02 0.017 26.6 12.5 153 250-416 181-439 (475)
459 COG0167 PyrD Dihydroorotate de 28.4 5.5E+02 0.012 26.1 10.4 120 220-371 96-239 (310)
460 PLN02898 HMP-P kinase/thiamin- 28.4 7.3E+02 0.016 26.5 12.0 138 211-372 359-500 (502)
461 PRK05585 yajC preprotein trans 28.3 1.1E+02 0.0024 26.0 4.7 41 136-185 47-87 (106)
462 COG1167 ARO8 Transcriptional r 28.3 1.8E+02 0.0038 30.9 7.2 53 30-82 387-455 (459)
463 PRK10528 multifunctional acyl- 28.2 1.9E+02 0.0042 26.3 6.7 52 261-312 58-113 (191)
464 PRK12475 thiamine/molybdopteri 28.1 3E+02 0.0065 28.1 8.6 64 236-312 83-146 (338)
465 TIGR02370 pyl_corrinoid methyl 28.1 1.8E+02 0.0038 27.2 6.5 41 214-254 129-171 (197)
466 PRK08328 hypothetical protein; 28.1 3.3E+02 0.0072 26.0 8.5 74 239-325 88-163 (231)
467 PF01645 Glu_synthase: Conserv 28.0 33 0.00071 35.6 1.6 107 195-314 202-330 (368)
468 cd03318 MLE Muconate Lactonizi 28.0 2.1E+02 0.0045 29.1 7.5 75 13-94 119-196 (365)
469 PRK02412 aroD 3-dehydroquinate 28.0 2.2E+02 0.0047 27.7 7.3 63 28-90 134-203 (253)
470 PRK02901 O-succinylbenzoate sy 27.9 3.9E+02 0.0084 27.2 9.3 61 29-94 78-142 (327)
471 TIGR03128 RuMP_HxlA 3-hexulose 27.9 4.7E+02 0.01 23.9 11.7 139 205-366 10-155 (206)
472 PF08541 ACP_syn_III_C: 3-Oxoa 27.8 65 0.0014 25.6 3.0 30 380-409 52-82 (90)
473 PRK12457 2-dehydro-3-deoxyphos 27.8 6.4E+02 0.014 25.3 11.8 137 198-346 85-236 (281)
474 PRK09517 multifunctional thiam 27.6 8.2E+02 0.018 27.8 12.8 135 207-369 69-216 (755)
475 PRK12738 kbaY tagatose-bisphos 27.5 6.4E+02 0.014 25.3 13.8 146 235-388 63-225 (286)
476 cd01311 PDC_hydrolase 2-pyrone 27.4 2.7E+02 0.0059 26.7 7.9 60 31-91 71-130 (263)
477 PRK03512 thiamine-phosphate py 27.1 2.2E+02 0.0047 27.0 7.0 44 43-86 22-65 (211)
478 PRK06806 fructose-bisphosphate 27.0 3.1E+02 0.0068 27.3 8.3 115 215-369 12-126 (281)
479 PRK12677 xylose isomerase; Pro 27.0 7.3E+02 0.016 25.8 15.5 156 204-363 28-232 (384)
480 COG1105 FruK Fructose-1-phosph 27.0 1.5E+02 0.0033 30.1 6.1 58 273-335 130-194 (310)
481 PLN02826 dihydroorotate dehydr 26.9 2.3E+02 0.0049 29.9 7.6 27 202-228 271-297 (409)
482 PRK05597 molybdopterin biosynt 26.8 3.2E+02 0.007 27.9 8.7 63 237-312 86-148 (355)
483 PF01026 TatD_DNase: TatD rela 26.8 5.7E+02 0.012 24.5 10.2 96 210-313 18-131 (255)
484 cd07943 DRE_TIM_HOA 4-hydroxy- 26.8 2E+02 0.0043 27.9 6.8 40 29-68 74-113 (263)
485 cd06523 GH25_PlyB-like PlyB is 26.7 1.7E+02 0.0036 26.7 6.0 89 273-372 23-112 (177)
486 cd03328 MR_like_3 Mandelate ra 26.7 3E+02 0.0065 28.0 8.4 74 12-94 113-190 (352)
487 TIGR00167 cbbA ketose-bisphosp 26.4 6.6E+02 0.014 25.1 14.2 168 209-388 32-229 (288)
488 PRK02999 malate synthase G; Pr 26.3 1.1E+02 0.0025 34.2 5.4 126 219-352 388-546 (726)
489 TIGR01345 malate_syn_G malate 26.2 1.2E+02 0.0025 34.1 5.4 132 219-361 385-549 (721)
490 cd06305 PBP1_methylthioribose_ 26.2 5.2E+02 0.011 23.9 9.5 43 357-401 166-213 (273)
491 cd08562 GDPD_EcUgpQ_like Glyce 26.1 4.9E+02 0.011 24.1 9.2 39 295-346 187-226 (229)
492 cd02072 Glm_B12_BD B12 binding 26.1 2.3E+02 0.0049 25.0 6.3 33 214-246 44-78 (128)
493 TIGR03217 4OH_2_O_val_ald 4-hy 26.1 2.2E+02 0.0047 29.0 7.2 40 28-67 75-114 (333)
494 PLN02389 biotin synthase 26.0 1.8E+02 0.0038 30.3 6.6 61 30-93 167-237 (379)
495 TIGR01496 DHPS dihydropteroate 25.9 1.5E+02 0.0033 28.9 5.8 54 43-98 26-87 (257)
496 cd06556 ICL_KPHMT Members of t 25.8 6.2E+02 0.013 24.6 12.3 129 204-347 17-176 (240)
497 PF10930 DUF2737: Protein of u 25.8 24 0.00051 26.3 0.1 23 309-331 8-31 (54)
498 PRK05269 transaldolase B; Prov 25.8 1.8E+02 0.0039 29.6 6.5 20 215-235 166-185 (318)
499 cd00728 malate_synt_G Malate s 25.8 1.2E+02 0.0026 34.0 5.3 126 219-352 380-538 (712)
500 PRK00694 4-hydroxy-3-methylbut 25.7 93 0.002 34.2 4.5 50 42-94 47-96 (606)
No 1
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=2.2e-113 Score=892.51 Aligned_cols=381 Identities=27% Similarity=0.449 Sum_probs=360.8
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEEEeecCC-
Q 014746 27 PAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELLVVTKTE- 105 (419)
Q Consensus 27 ~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR~~~~~~- 105 (419)
+|+|||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++.|++++||+|||||||||+...+
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~ 103 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKGFAVAVMMDTEGSEIHMGDLGGA 103 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCceEEEecCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CcEEeeCCCEEEEeeCCCCCC--CcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCc
Q 014746 106 HPISLLADESVVLTPDQDKEA--TSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSA 183 (419)
Q Consensus 106 ~~i~l~~G~~v~lt~~~~~~~--~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG 183 (419)
+++.|++||.|+|+.+. ..+ +.+.++++|++|++.+++||.||+| ||+|.|+| .+++++.++|+|.+||
T Consensus 104 ~~i~l~~G~~v~lt~~~-~~g~~~~~~i~v~y~~l~~~v~~Gd~Ilid----DG~i~l~V----~~~~~~~v~~~v~~~G 174 (509)
T PLN02762 104 SSAKAEDGEEWTFTVRK-FDGSRPEFTIQVNYDGFAEDVKVGDELVVD----GGMVRFEV----IEKIGPDVKCKCTDPG 174 (509)
T ss_pred ccEEecCCCEEEEeCCc-cCCCCCCcEEeechHHHHHhcCCCCEEEEe----CCEEEEEE----EEEECCEEEEEEEeCc
Confidence 57999999999999863 344 3578999999999999999999999 99999999 5557899999999999
Q ss_pred EEecCCcceee-------cCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEE
Q 014746 184 ILARQLYTLHV-------SQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAK 256 (419)
Q Consensus 184 ~l~~~~Kgvnl-------p~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaK 256 (419)
.| +++||||+ ||+.+++|+|||+|++||. |++++++|||++|||++++||+++|++|.+.+...+++||||
T Consensus 175 ~l-~~~KgvNl~~~g~~~p~~~~~lp~ltekD~~di~-f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAK 252 (509)
T PLN02762 175 LL-LPRANLTFWRDGSLVRERNAMLPTISSKDWLDID-FGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAK 252 (509)
T ss_pred EE-cCCCceeeccccCCCCCCccCCCCCCHHHHHHHH-HHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEE
Confidence 99 99999999 9999999999999999996 999999999999999999999999999998763237899999
Q ss_pred ecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHH
Q 014746 257 IENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN 335 (419)
Q Consensus 257 IEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~n 335 (419)
||+++|++|++||+++||||||||||||+|+|++++|.+||+|++.|+.+|||||+ |||||||++||+|||||++||||
T Consensus 253 IE~~~av~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaN 332 (509)
T PLN02762 253 IESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE 332 (509)
T ss_pred eCCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHhc-------------------------------------------
Q 014746 336 AVLDGSDAILLGAETLRGLYPVETISIVGKICAEAKT------------------------------------------- 372 (419)
Q Consensus 336 av~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~------------------------------------------- 372 (419)
||+||+||+|||+|||+|+||+|||++|++||+++|+
T Consensus 333 AVlDGtDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~a 412 (509)
T PLN02762 333 AVRQRADALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDA 412 (509)
T ss_pred HHHhCCCEEEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCE
Confidence 9999999999999999999999999999999997773
Q ss_pred ------------------------------------------------CCcChHHHHHHHHHHHHHCCCCCCCCEEEEEe
Q 014746 373 ------------------------------------------------TNATSESALKVALDYGKAHGVIKSHDRVVICQ 404 (419)
Q Consensus 373 ------------------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~ 404 (419)
...+.+++++.+.++++++|++++||.||+++
T Consensus 413 Iv~~T~sG~tA~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~GD~VVv~~ 492 (509)
T PLN02762 413 IFVYTKHGHMASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRLDFSDDMESNLNKTFSLLKARGMIKSGDLVIAVS 492 (509)
T ss_pred EEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 01367899999999999999999999999999
Q ss_pred ec---CCccEEEEEEcC
Q 014746 405 KV---GDSAVVKIMELE 418 (419)
Q Consensus 405 g~---g~tn~~~i~~~~ 418 (419)
|+ |+||+|||.++|
T Consensus 493 g~~~~g~tn~i~v~~v~ 509 (509)
T PLN02762 493 DLTPSSMLQSIQVRNVP 509 (509)
T ss_pred CCCCCCCceEEEEEEcC
Confidence 97 999999999885
No 2
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=2.8e-113 Score=891.26 Aligned_cols=397 Identities=38% Similarity=0.657 Sum_probs=373.2
Q ss_pred cccccccccCC-CCCCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhc-CCce
Q 014746 10 EPIRMASILEP-SKPTFFPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKST-KKLC 87 (419)
Q Consensus 10 ~~~~~~~~~~~-~~~~~~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~-~~~i 87 (419)
+++.+.+++.+ ......+|+||||||+||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++. ++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~i 98 (513)
T PTZ00066 19 TNISLDKILEPISDNDLRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANL 98 (513)
T ss_pred cccchhhhccccccCcccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCce
Confidence 44667777776 222347899999999999999999999999999999999999999999999999999999995 8999
Q ss_pred EEEEecCCCeEEEeecCC-CcEEeeCCCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEE
Q 014746 88 AVMLDTIGPELLVVTKTE-HPISLLADESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLE 166 (419)
Q Consensus 88 ~Il~Dl~GPkIR~~~~~~-~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~ 166 (419)
+||+||+|||||++...+ +++.|++|+.|+|+.+....++++.++++|++|++.+++||+||+| ||+|.|+|
T Consensus 99 aIl~Dl~GPkiR~g~~~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~Ilid----DG~i~l~V--- 171 (513)
T PTZ00066 99 GILLDTKGPEIRTGFLKNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIA----DGSLSCKV--- 171 (513)
T ss_pred EEEeeCCCCceeecccCCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEe----CCEEEEEE---
Confidence 999999999999987765 4799999999999987556678889999999999999999999999 99999999
Q ss_pred EEeecCCeEEEEEEeCcEEecCCcceeecCceecCCCCCccCHHHH-HHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhc
Q 014746 167 VTDVDGEDVVCQIKNSAILARQLYTLHVSQIRIDLPTLTDKDKEVI-STWGARNNIDFLSLSHTRGAEDVRHARDFLSQL 245 (419)
Q Consensus 167 v~~v~~~~i~~~v~~gG~l~~~~Kgvnlp~~~~~lp~lte~D~~di-~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~ 245 (419)
.+++++.++|+|++||.| +++||+|+||+.+++|+||++|++|| + |++++|+|||++|||++++||+++|++|.+.
T Consensus 172 -~~~~~~~v~~~v~~gG~l-~~~Kgvnlpg~~~~lp~ltekD~~dI~~-f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~ 248 (513)
T PTZ00066 172 -LEVHDDYIITKVLNNATI-GERKNMNLPGVKVELPVIGEKDKNDILN-FAIPMGCDFIALSFVQSADDVRLCRQLLGER 248 (513)
T ss_pred -EEEECCEEEEEEEeCcEE-cCCcccccCCCccCCCCCCHHHHHHHHH-HHHhcCCCEEEECCCCCHHHHHHHHHHHHhC
Confidence 556789999999999999 99999999999999999999999997 6 9999999999999999999999999999988
Q ss_pred CCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCC
Q 014746 246 GDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLR 324 (419)
Q Consensus 246 ~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~ 324 (419)
+ .+++|||||||++|++|++||++++|||||||||||+|+|+|++|.+||+|+++|+++|||||+ |||||||++||+
T Consensus 249 g--~~~~IiAKIE~~~av~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~ 326 (513)
T PTZ00066 249 G--RHIKIIPKIENIEGLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPR 326 (513)
T ss_pred C--CCceEEEEECCHHHHHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCC
Confidence 7 7899999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHhc--------------------------------
Q 014746 325 PTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAKT-------------------------------- 372 (419)
Q Consensus 325 PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~-------------------------------- 372 (419)
|||||++||||||+||+||+|||+|||.|+||+|||++|++||++||+
T Consensus 327 PTRAEvsDVaNAV~DG~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~ 406 (513)
T PTZ00066 327 PTRAESTDVANAVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVET 406 (513)
T ss_pred CchHHHHHHHHHHHhCCcEEEecchhcCCcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998884
Q ss_pred --------------------------------------------------------CCcChHHHHHHHHHHHHHCCCCCC
Q 014746 373 --------------------------------------------------------TNATSESALKVALDYGKAHGVIKS 396 (419)
Q Consensus 373 --------------------------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~ 396 (419)
...+.+++++.|.+++++.|++++
T Consensus 407 A~~l~a~aIv~~T~SG~TAr~iSk~RP~~pIia~t~~~~~~R~L~L~wGV~p~~~~~~~~~~~~i~~a~~~~~~~g~~~~ 486 (513)
T PTZ00066 407 AEDINAKLIIALTETGNTARLISKYRPSCTILALSASPSVVKSLSVARGVTTYVVNSFQGTDVVIRNAIALAKERGLVES 486 (513)
T ss_pred HHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 013578999999999999999999
Q ss_pred CCEEEEEeec-----CCccEEEEEEcC
Q 014746 397 HDRVVICQKV-----GDSAVVKIMELE 418 (419)
Q Consensus 397 gd~vv~~~g~-----g~tn~~~i~~~~ 418 (419)
||.||+++|+ |+||++||+.+|
T Consensus 487 GD~vVv~~g~~~~~~g~tn~irv~~v~ 513 (513)
T PTZ00066 487 GDSAIAVHGVKEEVAGSSNLMKVVKIP 513 (513)
T ss_pred CCEEEEEeCCCCCCCCCCeEEEEEEcC
Confidence 9999999997 789999999886
No 3
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=9.9e-113 Score=887.95 Aligned_cols=398 Identities=42% Similarity=0.698 Sum_probs=375.5
Q ss_pred cccccccCCCC-CCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEE
Q 014746 12 IRMASILEPSK-PTFFPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVM 90 (419)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il 90 (419)
++|.++|.|.. +..++|+|||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++++++|++++||
T Consensus 4 ~~~~~~~~~~~~~~~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g~~i~Il 83 (511)
T PLN02461 4 IDIEGILKGLPADGLRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTGILCAVM 83 (511)
T ss_pred cchhhhcccccCccccCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 78999999888 66699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCeEEEeecCC-CcEEeeCCCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEe
Q 014746 91 LDTIGPELLVVTKTE-HPISLLADESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTD 169 (419)
Q Consensus 91 ~Dl~GPkIR~~~~~~-~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~ 169 (419)
+||+|||||++...+ +++.|++||.++|+.+....++++.++++|++|++.+++||+||+| ||+|.|+| +++..
T Consensus 84 ~Dl~GPkIR~g~~~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~Ilid----DG~i~l~V-~~~~~ 158 (511)
T PLN02461 84 LDTKGPEIRTGFLKDGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCA----DGTITLTV-LSCDV 158 (511)
T ss_pred eeCCCCceeccccCCCCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEe----CCEEEEEE-EEEec
Confidence 999999999976654 3699999999999987555678889999999999999999999999 99999999 55432
Q ss_pred ecCCeEEEEEEeCcEEecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCC
Q 014746 170 VDGEDVVCQIKNSAILARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLG 249 (419)
Q Consensus 170 v~~~~i~~~v~~gG~l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~ 249 (419)
+++.++|+|.+||.| +++||||+||+.+++|+|||+|++||.+|++++++|||++|||++++||+++|++|.+.+ .
T Consensus 159 -~~~~i~~~v~~gG~l-~s~Kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~--~ 234 (511)
T PLN02461 159 -EAGTVRCRCENSAML-GERKNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHA--K 234 (511)
T ss_pred -CCCEEEEEEecCcEe-cCCceeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCC--C
Confidence 468999999999999 999999999999999999999999982399999999999999999999999999998777 7
Q ss_pred CceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchh
Q 014746 250 QTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRA 328 (419)
Q Consensus 250 ~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~Ptra 328 (419)
++.|||||||++|++||+||++++|||||||||||+|+|+|++|.+||+|++.|+++|||||+ |||||||++||+||||
T Consensus 235 ~~~IiAKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRA 314 (511)
T PLN02461 235 SILLISKVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRA 314 (511)
T ss_pred CCCEEEEECCHHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchH
Confidence 899999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHhc------------------------------------
Q 014746 329 EATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAKT------------------------------------ 372 (419)
Q Consensus 329 Ev~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~------------------------------------ 372 (419)
|++||||||.||+||+|||+|||+|+||+|||++|++||+++|+
T Consensus 315 EvsDVanAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l 394 (511)
T PLN02461 315 EATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKV 394 (511)
T ss_pred HHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999998883
Q ss_pred --------------------------------C---------------------------------------CcChHHHH
Q 014746 373 --------------------------------T---------------------------------------NATSESAL 381 (419)
Q Consensus 373 --------------------------------~---------------------------------------~~~~~~~~ 381 (419)
. ..+.+.++
T Consensus 395 ~a~aIiv~T~sG~tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i 474 (511)
T PLN02461 395 KASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEIL 474 (511)
T ss_pred CCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCHHHHH
Confidence 0 01467899
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEeecCCccEEEEEEcC
Q 014746 382 KVALDYGKAHGVIKSHDRVVICQKVGDSAVVKIMELE 418 (419)
Q Consensus 382 ~~a~~~~~~~~~~~~gd~vv~~~g~g~tn~~~i~~~~ 418 (419)
+.|++++++.|++++||.||+++|+|+||++||++++
T Consensus 475 ~~a~~~~~~~g~~~~Gd~vvvv~~~g~tn~i~v~~v~ 511 (511)
T PLN02461 475 EAAIEHAKKKGLCKPGDSVVALHRIGGASVIKILTVK 511 (511)
T ss_pred HHHHHHHHHcCCCCCcCEEEEEecCCCCcEEEEEEeC
Confidence 9999999999999999999999999999999999874
No 4
>PLN02765 pyruvate kinase
Probab=100.00 E-value=2.1e-112 Score=885.89 Aligned_cols=409 Identities=79% Similarity=1.183 Sum_probs=381.2
Q ss_pred CCCCccccccccccccccCCCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHH
Q 014746 1 MPSNNLLLEEPIRMASILEPSKPTFFPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAI 80 (419)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~ 80 (419)
||+..+++-.++.+.++|.+.+.....++|||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~ 80 (526)
T PLN02765 1 MQSSHLLLEEPIRLASILEPSKPSFFPALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAV 80 (526)
T ss_pred CCCcceEEecccchhhhcccccccccCCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 78887888888999999997776534445999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEEecCCCeEEEeecCCCcEEeeCCCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCC---
Q 014746 81 KSTKKLCAVMLDTIGPELLVVTKTEHPISLLADESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTG--- 157 (419)
Q Consensus 81 ~~~~~~i~Il~Dl~GPkIR~~~~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG--- 157 (419)
+++++|++||+||||||||++..+++++.|++||+|+|+.+....++.+.++++|++|++.+++||+||+| ||
T Consensus 81 ~~~~~~vaIl~Dl~GPkIR~g~~~~~~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~Ilid----DG~~~ 156 (526)
T PLN02765 81 KNTKKLCAVMLDTVGPELQVINKTEKPISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVG----QYLFT 156 (526)
T ss_pred HHhCCCeEEEecCCCCceeeeecCCCcEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEEC----Ccccc
Confidence 99999999999999999999888777899999999999987545678889999999999999999999999 87
Q ss_pred -----ceEEEEEEEEEeecCCeEEEEEEeCcEEecC-CcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCC
Q 014746 158 -----NETTSVMLEVTDVDGEDVVCQIKNSAILARQ-LYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRG 231 (419)
Q Consensus 158 -----~i~l~V~l~v~~v~~~~i~~~v~~gG~l~~~-~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~s 231 (419)
++.|+| .+++++.+.|+|.+||.| ++ +||+|+||+.+++|+||++|++||..|++++++|||++|||++
T Consensus 157 g~~dg~i~l~V----~~~~~~~v~~~v~~gG~L-~s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~ 231 (526)
T PLN02765 157 GSETTSVWLEV----DEVKGDDVVCTVKNSATL-AGSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRH 231 (526)
T ss_pred cccCceEEEEE----EEEECCEEEEEEEeCcEE-CCCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCC
Confidence 899888 556789999999999999 99 5899999999999999999999983499999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 014746 232 AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAV 311 (419)
Q Consensus 232 aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi 311 (419)
++||.++|++|.+.+. .++.|||||||++|++||++|++++|||||||||||+|+|++++|.+||+|++.|+++|||||
T Consensus 232 a~DI~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI 310 (526)
T PLN02765 232 AEDVREAREFLSSLGL-SQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV 310 (526)
T ss_pred HHHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeE
Confidence 9999999999988762 378999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHhc-------------------
Q 014746 312 VTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAKT------------------- 372 (419)
Q Consensus 312 ~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~------------------- 372 (419)
+|||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||+++|+
T Consensus 311 ~TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 390 (526)
T PLN02765 311 VTRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPM 390 (526)
T ss_pred EehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCC
Confidence 8999999999999999999999999999999999999999999999999999999998883
Q ss_pred -----------------------------------------------C---------------C----------------
Q 014746 373 -----------------------------------------------T---------------N---------------- 374 (419)
Q Consensus 373 -----------------------------------------------~---------------~---------------- 374 (419)
. +
T Consensus 391 ~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~ 470 (526)
T PLN02765 391 SHLESIASSAVRAAIKVKASVIIVFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPML 470 (526)
T ss_pred CHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEE
Confidence 1 0
Q ss_pred ----cC-------hHHHHHHHHHHHHHCCCCCCCCEEEEEeecCCccEEEEEEcCC
Q 014746 375 ----AT-------SESALKVALDYGKAHGVIKSHDRVVICQKVGDSAVVKIMELED 419 (419)
Q Consensus 375 ----~~-------~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~g~tn~~~i~~~~~ 419 (419)
.+ .+.+++.|+++++++|++++||.||+++++|+||++||+.++|
T Consensus 471 ~~~~~~~e~~~~~~~~~~~~a~~~~~~~g~~~~GD~vvv~~~~g~tn~i~v~~v~~ 526 (526)
T PLN02765 471 ADPRHSAESTSATNESVLKVALDHGKAAGVIKSHDRVVVCQKVGDSSVVKIIELDD 526 (526)
T ss_pred eccccccccccccHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCceEEEEEcCC
Confidence 02 3667999999999999999999999999999999999999875
No 5
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-112 Score=874.60 Aligned_cols=381 Identities=37% Similarity=0.626 Sum_probs=364.4
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEEEeecCC
Q 014746 26 FPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELLVVTKTE 105 (419)
Q Consensus 26 ~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR~~~~~~ 105 (419)
++|+|||||||||++++++.|++|+++||||||||||||++++|.+.++++|++++++|+|++||+||||||||++.+.+
T Consensus 3 ~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR~g~~~~ 82 (477)
T COG0469 3 MMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLGRPVAILLDLKGPKIRTGKFKG 82 (477)
T ss_pred CCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhCCceEEEEcCCCCcceeEecCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CcEEeeCCCEEEEeeCCCC-CCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcE
Q 014746 106 HPISLLADESVVLTPDQDK-EATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAI 184 (419)
Q Consensus 106 ~~i~l~~G~~v~lt~~~~~-~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~ 184 (419)
+.+.|++|++|+|+++... .++.+.++++|++|+++|++|++||+| ||++.|+| .+++++.+.|+|.|||.
T Consensus 83 ~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlD----DG~i~l~V----~~v~~~~v~~~v~n~G~ 154 (477)
T COG0469 83 GAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLD----DGKIELRV----VEVDGDAVITRVLNGGV 154 (477)
T ss_pred CcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEe----CCeeEEEE----EEeeCCEEEEEEEeCCC
Confidence 8899999999999988652 445789999999999999999999999 99999999 56677889999999999
Q ss_pred EecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHh
Q 014746 185 LARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLT 264 (419)
Q Consensus 185 l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~ 264 (419)
| +++||||+||+.+++|+|||+|++||. |+++.|+|||++|||++++|+.++|+++.+.+. .+.+||||||+++||+
T Consensus 155 l-~~~KgvN~pg~~l~~palteKD~~dl~-f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~-~~~~iiaKIE~~eav~ 231 (477)
T COG0469 155 L-SSNKGVNLPGVDLSLPALTEKDKEDLK-FGLEQGVDFVALSFVRNAEDVEEVREILAETGG-RDVKIIAKIENQEAVD 231 (477)
T ss_pred c-cCCCceecCCCCCCCCCCCccCHHHHH-HHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCC-CCceEEEeecCHHHHh
Confidence 9 999999999999999999999999997 999999999999999999999999999988763 5599999999999999
Q ss_pred hHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCce
Q 014746 265 HFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDA 343 (419)
Q Consensus 265 nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~ 343 (419)
|+++|+++|||||+||||||+|+|.+++|.+||+|++.||.+|||||+ |||||||++||+|||||++||||||.||+||
T Consensus 232 NldeIi~~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDA 311 (477)
T COG0469 232 NLDEIIEASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDA 311 (477)
T ss_pred HHHHHHHhcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCce
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHHHHhc---------------------------------------------------
Q 014746 344 ILLGAETLRGLYPVETISIVGKICAEAKT--------------------------------------------------- 372 (419)
Q Consensus 344 vmLs~ETa~G~yP~eaV~~~~~I~~~aE~--------------------------------------------------- 372 (419)
+|||+|||.|+||+|||++|++||.++|+
T Consensus 312 vMLS~ETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~ 391 (477)
T COG0469 312 VMLSGETAAGKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARL 391 (477)
T ss_pred eeechhhhcCCCHHHHHHHHHHHHHHHhcccchhhhhhhccccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHH
Confidence 99999999999999999999999999998
Q ss_pred ----------------------------------C--CcChHHHHHHHHHHHHHCCCCCCCCEEEEEeec-----CCccE
Q 014746 373 ----------------------------------T--NATSESALKVALDYGKAHGVIKSHDRVVICQKV-----GDSAV 411 (419)
Q Consensus 373 ----------------------------------~--~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~-----g~tn~ 411 (419)
. +.+.+.+++.+++++.+.|+++.||.||+++|. |+||+
T Consensus 392 isk~Rp~~pIia~t~~~~v~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gD~vvit~G~~~~~~G~tn~ 471 (477)
T COG0469 392 LSKYRPEAPIIALTPNERVARRLALVWGVYPLLVEEKPTSTDEMVEEAVEKLLESGLVKKGDLVVITAGVPMGTVGTTNT 471 (477)
T ss_pred HhcCCCCCcEEEECCCHHHHhhhceeecceeEEecCCCCcHHHHHHHHHHHHHhcCcccCCCEEEEecCcccccCCCcee
Confidence 1 246789999999999999999999999999995 89999
Q ss_pred EEEEEc
Q 014746 412 VKIMEL 417 (419)
Q Consensus 412 ~~i~~~ 417 (419)
+||+++
T Consensus 472 ikv~~v 477 (477)
T COG0469 472 IKVLTV 477 (477)
T ss_pred EEEEeC
Confidence 999875
No 6
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=7.3e-111 Score=869.33 Aligned_cols=380 Identities=36% Similarity=0.615 Sum_probs=361.2
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEEEeecCCC
Q 014746 27 PAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELLVVTKTEH 106 (419)
Q Consensus 27 ~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR~~~~~~~ 106 (419)
+|+|||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++++++|++++||+||+|||||++..+++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~~~i~Il~Dl~GPkiR~g~~~~~ 80 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKKAAILLDTKGPEIRTMKLEGG 80 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCceeccccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999877544
Q ss_pred -cEEeeCCCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcEE
Q 014746 107 -PISLLADESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAIL 185 (419)
Q Consensus 107 -~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~l 185 (419)
++.|++||.++|+.+....++.+.++++|++|++.+++||.||+| ||+|.|+| .+++++.++|+|++||.|
T Consensus 81 ~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~id----DG~i~l~V----~~~~~~~v~~~v~~~G~l 152 (470)
T PRK09206 81 NDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVD----DGLIGMEV----TAITGNEVICKVLNNGDL 152 (470)
T ss_pred CeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEe----CCEEEEEE----EEEeCCEEEEEEEECCEe
Confidence 699999999999987655677889999999999999999999999 99999999 555789999999999999
Q ss_pred ecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhh
Q 014746 186 ARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTH 265 (419)
Q Consensus 186 ~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~n 265 (419)
+++||||+||+.+++|+|||+|++||+ |++++|+|||++|||++++||+++++++.+.+. .++.|||||||++|++|
T Consensus 153 -~s~Kgvn~p~~~~~lp~ltekD~~di~-f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~-~~~~iiaKIEt~eav~n 229 (470)
T PRK09206 153 -GENKGVNLPGVSIALPALAEKDKQDLI-FGCEQGVDFVAASFIRKRSDVLEIREHLKAHGG-ENIQIISKIENQEGLNN 229 (470)
T ss_pred -cCCCceeccCcccCCCCCCHHHHHHHH-HHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCC-CCceEEEEECCHHHHHh
Confidence 999999999999999999999999996 999999999999999999999999999988752 47999999999999999
Q ss_pred HHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceE
Q 014746 266 FDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAI 344 (419)
Q Consensus 266 l~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~v 344 (419)
+++|++++|||||||||||+|+|++++|.+|++|+++|+++|||+|+ |||||||++||+|||||++||||||.||+||+
T Consensus 230 ldeIl~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~Dav 309 (470)
T PRK09206 230 FDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAV 309 (470)
T ss_pred HHHHHHhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEE
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EecccccCCCCHHHHHHHHHHHHHHHhc----------------------------------------------------
Q 014746 345 LLGAETLRGLYPVETISIVGKICAEAKT---------------------------------------------------- 372 (419)
Q Consensus 345 mLs~ETa~G~yP~eaV~~~~~I~~~aE~---------------------------------------------------- 372 (419)
|||+|||+|+||+|||++|++||+++|+
T Consensus 310 MLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~is~ 389 (470)
T PRK09206 310 MLSGESAKGKYPLEAVSIMATICERTDRVMNSRLESNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRK 389 (470)
T ss_pred EEechhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhccccCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHh
Confidence 9999999999999999999999999984
Q ss_pred --------------------------------CCcChHHHHHHHHHHHHHCCCCCCCCEEEEEeec----CCccEEEEEE
Q 014746 373 --------------------------------TNATSESALKVALDYGKAHGVIKSHDRVVICQKV----GDSAVVKIME 416 (419)
Q Consensus 373 --------------------------------~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~----g~tn~~~i~~ 416 (419)
...+.+++++.|++++++.|++++||.||+++|+ |+||++||++
T Consensus 390 ~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~~~~g~tn~i~v~~ 469 (470)
T PRK09206 390 YFPDATILALTTNEKTARQLVLSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQKGDVVVMVSGALVPSGTTNTASVHV 469 (470)
T ss_pred hCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCeEEEEEE
Confidence 0135789999999999999999999999999996 8999999986
Q ss_pred c
Q 014746 417 L 417 (419)
Q Consensus 417 ~ 417 (419)
.
T Consensus 470 ~ 470 (470)
T PRK09206 470 L 470 (470)
T ss_pred C
Confidence 3
No 7
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=2.1e-110 Score=865.28 Aligned_cols=378 Identities=31% Similarity=0.523 Sum_probs=361.3
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEEEeecCC
Q 014746 26 FPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELLVVTKTE 105 (419)
Q Consensus 26 ~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR~~~~~~ 105 (419)
++|+|||||||||+|+++++|++|+++|||+||||||||++++|+++++++|+++++++++++||+||||||||++...+
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~~~i~Il~Dl~GpkiR~g~~~~ 82 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETGRPIGILADLQGPKLRLGRFAD 82 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeeEEEeCCCCceeccccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CcEEeeCCCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcEE
Q 014746 106 HPISLLADESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAIL 185 (419)
Q Consensus 106 ~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~l 185 (419)
+++.|++||+|+|+.+. ..++++.++++|++|++.+++||+||+| ||+|.|+| .+++++.++|+|.+||.|
T Consensus 83 ~~i~l~~G~~~~l~~~~-~~~~~~~i~v~~~~l~~~v~~G~~I~id----DG~i~l~V----~~~~~~~i~~~v~~~G~l 153 (476)
T PRK06247 83 GKVQLANGQTFRLDVDD-APGDHDRVSLPHPEIAAALKPGDRLLVD----DGKVRLVV----EACDGDDVVCRVVEGGPV 153 (476)
T ss_pred CcEeccCCCEEEEEecc-cCCCCCEeecChhHhHhhcCCCCEEEEe----CCeEEEEE----EEEECCEEEEEEEeCcEE
Confidence 78999999999999873 5678889999999999999999999999 99999999 556789999999999999
Q ss_pred ecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhh
Q 014746 186 ARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTH 265 (419)
Q Consensus 186 ~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~n 265 (419)
+++||+|+||..+++|+||++|++||. |++++|+|||++|||++++||+++|+++. .++.|||||||++|++|
T Consensus 154 -~~~Kgvn~p~~~~~~p~ltekD~~di~-f~~~~~vD~ia~SFVr~a~Di~~~r~~l~-----~~~~iiaKIEt~eav~n 226 (476)
T PRK06247 154 -SDRKGVSLPGTVLSVSALTEKDRADLE-FALELGVDWVALSFVQRPEDVEEVRKIIG-----GRVPVMAKIEKPQAIDR 226 (476)
T ss_pred -cCCCccccCCcccCCCCCCHHHHHHHH-HHHHcCCCEEEECCCCCHHHHHHHHHHhh-----hcCeEEEEECCHHHHHh
Confidence 999999999999999999999999996 99999999999999999999999999994 46889999999999999
Q ss_pred HHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceE
Q 014746 266 FDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAI 344 (419)
Q Consensus 266 l~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~v 344 (419)
+++|++++|||||||||||+++|+++++.+|++|+++|+++|||+|+ |||||||++||+|||||++||||||+||+||+
T Consensus 227 ldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~Dav 306 (476)
T PRK06247 227 LEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAV 306 (476)
T ss_pred HHHHHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEE
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EecccccCCCCHHHHHHHHHHHHHHHhc----------------------------------------------------
Q 014746 345 LLGAETLRGLYPVETISIVGKICAEAKT---------------------------------------------------- 372 (419)
Q Consensus 345 mLs~ETa~G~yP~eaV~~~~~I~~~aE~---------------------------------------------------- 372 (419)
|||+|||+|+||+|||++|++||+++|+
T Consensus 307 MLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~~i 386 (476)
T PRK06247 307 MLSAETASGKYPVEAVRTMARIIRQVERDPTYPPLIHAQRPQPEATKRDAISYAARDIAERLDLAALVAYTSSGDTALRA 386 (476)
T ss_pred EEcchhcCCCCHHHHHHHHHHHHHHHhhccchhhhhhhcccccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHHHH
Confidence 9999999999999999999999999994
Q ss_pred ----------------------------------CCcChHHHHHHHHHHHHHCCCCCCCCEEEEEeec-----CCccEEE
Q 014746 373 ----------------------------------TNATSESALKVALDYGKAHGVIKSHDRVVICQKV-----GDSAVVK 413 (419)
Q Consensus 373 ----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~-----g~tn~~~ 413 (419)
...+.++++..|++++++.|++++||.||+++|+ |+||++|
T Consensus 387 sk~RP~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~~~~~g~tn~i~ 466 (476)
T PRK06247 387 ARERPPLPILALTPNPETARRLALTWGVHCVVVDDARDTDDMVRRADRIALAEGFYKRGDRVVIVAGVPPGTPGSTNMLR 466 (476)
T ss_pred HhhCCCCCEEEECCCHHHHHHhhcccCCeeEecCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCeEEE
Confidence 0136789999999999999999999999999997 7999999
Q ss_pred EEEcCC
Q 014746 414 IMELED 419 (419)
Q Consensus 414 i~~~~~ 419 (419)
|+++++
T Consensus 467 v~~v~~ 472 (476)
T PRK06247 467 IAYIGE 472 (476)
T ss_pred EEEeCC
Confidence 999853
No 8
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=1.2e-108 Score=857.15 Aligned_cols=379 Identities=40% Similarity=0.657 Sum_probs=361.3
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEEEeecCCC
Q 014746 27 PAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELLVVTKTEH 106 (419)
Q Consensus 27 ~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR~~~~~~~ 106 (419)
+|+|||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++++++||+||||||||++..+++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~~~i~il~Dl~GpkiR~g~~~~~ 80 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGPVAIALDTKGPEIRTGLFKGG 80 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeecccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999877654
Q ss_pred -cEEeeCCCEEEEeeCCC-CCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCC-eEEEEEEeCc
Q 014746 107 -PISLLADESVVLTPDQD-KEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGE-DVVCQIKNSA 183 (419)
Q Consensus 107 -~i~l~~G~~v~lt~~~~-~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~-~i~~~v~~gG 183 (419)
++.|++||+|+|+++.. ..++.+.++++|++|++.+++||.||+| ||++.|+| .+++++ .++|+|.+||
T Consensus 81 ~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~id----DG~i~l~V----~~~~~~~~i~~~v~~~G 152 (480)
T cd00288 81 KDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVD----DGLLSLKV----LSKDDDKTLVCEVLNGG 152 (480)
T ss_pred CceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEe----CCEEEEEE----EEEcCCceEEEEEEeCe
Confidence 79999999999998753 4677889999999999999999999999 99999998 555777 8999999999
Q ss_pred EEecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhH
Q 014746 184 ILARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGL 263 (419)
Q Consensus 184 ~l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv 263 (419)
.| +++||||+||..+++|+||++|++||+ |++++|+|||++|||++++||+++|+++.+.+ .++.+||||||++|+
T Consensus 153 ~l-~~~kgin~p~~~~~~p~ltekD~~di~-f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~--~~~~iiakIEt~~av 228 (480)
T cd00288 153 VL-GSRKGVNLPGTDVDLPALSEKDKADLR-FGVEQGVDMIFASFVRKASDVLEIREVLGEKG--KDIKIIAKIENQEGV 228 (480)
T ss_pred EE-cCCCceEeeCcccCCCCCCHHHHHHHH-HHHHcCCCEEEECCCCCHHHHHHHHHHHHhcC--CCceEEEEECCHHHH
Confidence 99 999999999999999999999999997 99999999999999999999999999999877 789999999999999
Q ss_pred hhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCc
Q 014746 264 THFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSD 342 (419)
Q Consensus 264 ~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D 342 (419)
+|+++|++++|||||||||||+++|.++++.+|++|+++|+++|||+|+ |||||||++||+|||||++||||||+||+|
T Consensus 229 ~nldeI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D 308 (480)
T cd00288 229 NNFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTD 308 (480)
T ss_pred HhHHHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred eEEecccccCCCCHHHHHHHHHHHHHHHhc--------------------------------------------------
Q 014746 343 AILLGAETLRGLYPVETISIVGKICAEAKT-------------------------------------------------- 372 (419)
Q Consensus 343 ~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~-------------------------------------------------- 372 (419)
|+|||+|||+|+||+|||++|++||+++|+
T Consensus 309 ~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~T 388 (480)
T cd00288 309 CVMLSGETAKGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRT 388 (480)
T ss_pred EEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHH
Confidence 999999999999999999999999998883
Q ss_pred --------------------------------------CC-----cChHHHHHHHHHHHHHCCCCCCCCEEEEEeec---
Q 014746 373 --------------------------------------TN-----ATSESALKVALDYGKAHGVIKSHDRVVICQKV--- 406 (419)
Q Consensus 373 --------------------------------------~~-----~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~--- 406 (419)
.. .+.+++++.|.++++++|++++||.||+++|+
T Consensus 389 A~~lS~~RP~~pIiavT~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~~~~ 468 (480)
T cd00288 389 ARLVSKYRPNAPIIAVTRNEQTARQLHLYRGVYPVLFEEPKPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQGWPVG 468 (480)
T ss_pred HHHHHhhCCCCCEEEEcCCHHHhhheeeccCcEEEEecccccccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCC
Confidence 11 35688999999999999999999999999998
Q ss_pred -CCccEEEEEEc
Q 014746 407 -GDSAVVKIMEL 417 (419)
Q Consensus 407 -g~tn~~~i~~~ 417 (419)
|+||++||+++
T Consensus 469 ~~~tn~i~v~~~ 480 (480)
T cd00288 469 SGSTNTMRILTV 480 (480)
T ss_pred CCCCeEEEEEEC
Confidence 79999999875
No 9
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=2.5e-108 Score=871.80 Aligned_cols=382 Identities=33% Similarity=0.564 Sum_probs=362.5
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEEEeecCC
Q 014746 26 FPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELLVVTKTE 105 (419)
Q Consensus 26 ~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR~~~~~~ 105 (419)
.+|+|||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++++++++|++||+||||||||++...+
T Consensus 6 ~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 85 (590)
T PRK06354 6 LMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLGKTVGILQDLQGPKIRLGRFED 85 (590)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCceeccccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CcEEeeCCCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcEE
Q 014746 106 HPISLLADESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAIL 185 (419)
Q Consensus 106 ~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~l 185 (419)
+++.|++||+|+|+.+. ..++++.++++|++|++.+++||.||+| ||+|.|+| ++++ .+++.++|+|.+||.|
T Consensus 86 ~~i~l~~G~~~~l~~~~-~~~~~~~i~v~~~~l~~~v~~Gd~i~id----DG~i~l~V-~~~~-~~~~~v~~~v~~~g~l 158 (590)
T PRK06354 86 GPIELKTGDEFILTSRE-VLGTQEKFSVTYDGLADEVPVGSRILLD----DGLIELEV-EEVD-KADGELHCKVLVGGVL 158 (590)
T ss_pred CcEEecCCCEEEEEecc-cCCCCCEEeechHHHHhhcCCCCEEEEe----CCeEEEEE-EEEE-cCCCEEEEEEEeCeEE
Confidence 78999999999999873 5678889999999999999999999999 99999999 5432 1378999999999999
Q ss_pred ecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHh-cCCCCCceEEEEecCHHhHh
Q 014746 186 ARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQ-LGDLGQTQIFAKIENTEGLT 264 (419)
Q Consensus 186 ~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~-~~~~~~~~IiaKIEt~~gv~ 264 (419)
+++||||+||+.+++|+|||+|++||+ |++++++|||++|||++++||+++++++.+ .+ .++.|||||||++|++
T Consensus 159 -~~~Kgvn~p~~~~~~p~ltekD~~di~-f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~--~~~~iiaKIEt~eav~ 234 (590)
T PRK06354 159 -SNKKGVNFPGVSLSLPAITEKDREDLI-FGLEQGVDWIALSFVRNPSDVLEIRELIEEHNG--KHIPIIAKIEKQEAID 234 (590)
T ss_pred -CCCCcccccCCccCCCCCCHHHHHHHH-HHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcC--CCceEEEEECCHHHHH
Confidence 999999999999999999999999996 999999999999999999999999999955 35 7899999999999999
Q ss_pred hHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCce
Q 014746 265 HFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDA 343 (419)
Q Consensus 265 nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~ 343 (419)
|++||++++|||||||||||+|+|.++++.+|++|+++|+++|||+|+ |||||||++||+|||||++||||||+||+||
T Consensus 235 nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~Da 314 (590)
T PRK06354 235 NIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDA 314 (590)
T ss_pred hHHHHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcE
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHHHHhc---------------------------------------------------
Q 014746 344 ILLGAETLRGLYPVETISIVGKICAEAKT--------------------------------------------------- 372 (419)
Q Consensus 344 vmLs~ETa~G~yP~eaV~~~~~I~~~aE~--------------------------------------------------- 372 (419)
+|||+|||+|+||+|||++|++||+++|+
T Consensus 315 vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~v 394 (590)
T PRK06354 315 VMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPEFTTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNV 394 (590)
T ss_pred EEecccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhhccccCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHH
Confidence 99999999999999999999999999994
Q ss_pred ----------------------------------CCcChHHHHHHHHHHHHHCCCCCCCCEEEEEeec-----CCccEEE
Q 014746 373 ----------------------------------TNATSESALKVALDYGKAHGVIKSHDRVVICQKV-----GDSAVVK 413 (419)
Q Consensus 373 ----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~-----g~tn~~~ 413 (419)
...+.+.+++.+++++++.|++++||.||+++|+ |+||++|
T Consensus 395 sk~Rp~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~~~~~~g~tn~~~ 474 (590)
T PRK06354 395 SKYRPKTPILAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDAAINVAQESGLLKQGDLVVITAGTLVGESGSTDLMK 474 (590)
T ss_pred HhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCcCCCceeEE
Confidence 0135789999999999999999999999999996 7999999
Q ss_pred EEEcC
Q 014746 414 IMELE 418 (419)
Q Consensus 414 i~~~~ 418 (419)
|++++
T Consensus 475 v~~v~ 479 (590)
T PRK06354 475 VHVVG 479 (590)
T ss_pred EEEec
Confidence 99874
No 10
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=1.1e-105 Score=832.15 Aligned_cols=369 Identities=37% Similarity=0.591 Sum_probs=354.5
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEEEeecCC
Q 014746 26 FPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELLVVTKTE 105 (419)
Q Consensus 26 ~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR~~~~~~ 105 (419)
.+|+||||||+||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|+|++|++||+|||||++...+
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 81 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKE 81 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CcEEeeCCCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcEE
Q 014746 106 HPISLLADESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAIL 185 (419)
Q Consensus 106 ~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~l 185 (419)
+++.|++||+|+|+.+....++++.|+++|++|++.+++||.||+| ||+|.|+| .+++++.++|+|++||.|
T Consensus 82 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilid----DG~i~l~V----~~~~~~~v~~~v~~~g~l 153 (465)
T PRK05826 82 GKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLD----DGKLQLKV----VEVDGDEVETEVKNGGPL 153 (465)
T ss_pred CcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEe----CCeEEEEE----EEEeCCEEEEEEEeCcEe
Confidence 7899999999999988555688889999999999999999999999 99999998 556789999999999999
Q ss_pred ecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCC-CceEEEEecCHHhHh
Q 014746 186 ARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLG-QTQIFAKIENTEGLT 264 (419)
Q Consensus 186 ~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~-~~~IiaKIEt~~gv~ 264 (419)
+++||||+||+.+++|+||++|.++|+ |++++|+|+|++|||+|++|++++++++.+++ . ++.|||||||++|++
T Consensus 154 -~s~kgvnlp~~~~~lp~lte~D~~~i~-~ald~g~d~I~~sfV~saedv~~l~~~l~~~~--~~~~~iiakIEt~eav~ 229 (465)
T PRK05826 154 -SNNKGINIPGGGLSLPALTEKDKADIK-FAAEQGVDYIAVSFVRSAEDVEEARRLLREAG--CPHAKIIAKIERAEAVD 229 (465)
T ss_pred -cCCceeeccCcccCCCCCChhhHHHHH-HHHHCCCCEEEECCCCCHHHHHHHHHHHHHcC--CcCceEEEEEcCHHHHH
Confidence 999999999999999999999999996 99999999999999999999999999999888 6 899999999999999
Q ss_pred hHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCce
Q 014746 265 HFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDA 343 (419)
Q Consensus 265 nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~ 343 (419)
|+++|++++|||||||||||+++|.++++.+|++|+++|+++|||+|+ |||||||++||+|||||++||+|||.||+||
T Consensus 230 nldeI~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~ 309 (465)
T PRK05826 230 NIDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDA 309 (465)
T ss_pred hHHHHHHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcE
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHHHHhc---------------------------------------------------
Q 014746 344 ILLGAETLRGLYPVETISIVGKICAEAKT--------------------------------------------------- 372 (419)
Q Consensus 344 vmLs~ETa~G~yP~eaV~~~~~I~~~aE~--------------------------------------------------- 372 (419)
+|||+|||.|+||+|||+||++||+++|+
T Consensus 310 vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~ 389 (465)
T PRK05826 310 VMLSGETAAGKYPVEAVEAMARICKGAEKEFSINLSKHRLDRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARL 389 (465)
T ss_pred EEeccccccCcCHHHHHHHHHHHHHHHHhccchhhhhhhccccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHH
Confidence 99999999999999999999999999984
Q ss_pred -----------------------------------CCcChHHHHHHHHHHHHHCCCCCCCCEEEEEeec
Q 014746 373 -----------------------------------TNATSESALKVALDYGKAHGVIKSHDRVVICQKV 406 (419)
Q Consensus 373 -----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~ 406 (419)
...+.+.+++.|+++++++|++++||.||+++|+
T Consensus 390 isk~RP~~pI~~~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvvv~g~ 458 (465)
T PRK05826 390 ISRFRPGAPIFAVTRDEKTQRRLALYRGVYPVLFDSAADTDDAAEEALRLLLEKGLVESGDLVVVTSGD 458 (465)
T ss_pred HHhhCCCCCEEEEcCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC
Confidence 0135788999999999999999999999999998
No 11
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=1.3e-105 Score=804.12 Aligned_cols=343 Identities=29% Similarity=0.493 Sum_probs=321.1
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEEEeecCCCcE
Q 014746 29 MTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELLVVTKTEHPI 108 (419)
Q Consensus 29 ~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR~~~~~~~~i 108 (419)
+++|||||||+|+++++|++|+++|||+||||||||++++|.++++++|++.+ +++||+||+||||||+...++++
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~----~vaIl~Dl~GPkIR~G~~~~~~i 77 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD----SIKILGDVQGPKIRLGEIKGEQI 77 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh----hcceeecCCCCcceecccCCCcE
Confidence 68999999999999999999999999999999999999999999999999865 48999999999999988776689
Q ss_pred EeeCCCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcEEecC
Q 014746 109 SLLADESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAILARQ 188 (419)
Q Consensus 109 ~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~l~~~ 188 (419)
.|++|+.++|+++. ..++.+.++++|++|++.+++||.||+| ||+|.|+| .+++++.+.|+|++||.| ++
T Consensus 78 ~l~~G~~v~lt~~~-~~g~~~~i~v~~~~l~~~v~~Gd~Ilid----DG~i~l~V----~~v~~~~v~~~v~~gG~L-~s 147 (352)
T PRK06739 78 TLQAGDSFILHTQP-VTGSSTEASVDYEGIANDVKVGSRILMN----DGEVELIV----EKVSTDKIETKVKTGGNI-SS 147 (352)
T ss_pred EecCCCEEEEecCc-cCCCCCEEecchHHHHhhcCCCCEEEEe----CCEEEEEE----EEEeCCEEEEEEeeCcEE-cC
Confidence 99999999999873 5677889999999999999999999999 99999999 556789999999999999 99
Q ss_pred CcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHH
Q 014746 189 LYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDE 268 (419)
Q Consensus 189 ~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~e 268 (419)
+||||+||+.+++|+||++|++||. |++++++|||++|||++++||+++|++|.+.+. .+++|||||||++|++||++
T Consensus 148 ~Kgvn~pg~~~~lp~ltekD~~di~-f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~e 225 (352)
T PRK06739 148 HKGVNLPGAIVRLPAITEKDKKDIQ-FLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKE-TSPNLIAKIETMEAIENFQD 225 (352)
T ss_pred CCCeecccccCCCCCCCHHHHHHHH-HHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHH
Confidence 9999999999999999999999996 999999999999999999999999999998752 57899999999999999999
Q ss_pred HHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 269 ILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 269 I~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
|+.++|||||||||||+|+|++++|.+||+|++.|+++|||||+ |||||||++||+|||||++||||||.||+||+|||
T Consensus 226 I~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS 305 (352)
T PRK06739 226 ICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLS 305 (352)
T ss_pred HHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEc
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhcCCcChHHHHHHHHHH
Q 014746 348 AETLRGLYPVETISIVGKICAEAKTTNATSESALKVALDY 387 (419)
Q Consensus 348 ~ETa~G~yP~eaV~~~~~I~~~aE~~~~~~~~~~~~a~~~ 387 (419)
+|||+|+||+|||+||++||++||+...+.-...+.++++
T Consensus 306 ~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~ 345 (352)
T PRK06739 306 AESASGEHPIESVSTLRLVSEFAEHVKKDGPFVMKDVLEL 345 (352)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHhhhccCchhHHHHHHH
Confidence 9999999999999999999999998543333333334333
No 12
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=3.8e-106 Score=813.27 Aligned_cols=336 Identities=43% Similarity=0.685 Sum_probs=303.3
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEEEeecCC-
Q 014746 27 PAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELLVVTKTE- 105 (419)
Q Consensus 27 ~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR~~~~~~- 105 (419)
||+|||||||||+|++++.|++|+++|||+||||||||++++|+++++++|+++++++++++||+||+||||||+...+
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~~~i~IllDl~GPkIRtg~l~~g 80 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELGKPIAILLDLKGPKIRTGRLKDG 80 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTTTS-EEEEEE-TS-EBB-BBTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccCCceEEEeccCCCcceeeeeccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999977765
Q ss_pred -CcEEeeCCCEEEEeeCCCC--CCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCe-EEEEEEe
Q 014746 106 -HPISLLADESVVLTPDQDK--EATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGED-VVCQIKN 181 (419)
Q Consensus 106 -~~i~l~~G~~v~lt~~~~~--~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~-i~~~v~~ 181 (419)
.++.|++||+|+|+.+... .++.+.|++||++|++.|++||+||+| ||++.|+| .+++++. ++|+|.+
T Consensus 81 ~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~Ilid----DG~i~l~V----~~v~~~~~i~~~v~~ 152 (348)
T PF00224_consen 81 KKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILID----DGKIELEV----TEVDGDSSIKCEVLN 152 (348)
T ss_dssp SSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEET----TTTEEEEE----EEEESTEEEEEEESS
T ss_pred cccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEc----CCCcEEEE----EEEcCCcceeEEeCC
Confidence 4699999999999998653 467889999999999999999999999 99999999 5557777 9999999
Q ss_pred CcEEecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHH
Q 014746 182 SAILARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTE 261 (419)
Q Consensus 182 gG~l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~ 261 (419)
||.| +++||||+|+.++++|+||++|++||. |++++|+|||++|||++++||.++|++|.+.+ .+++|||||||++
T Consensus 153 ~G~L-~~~KgVnlp~~~~~lp~LtekD~~di~-fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~--~~~~iiaKIE~~~ 228 (348)
T PF00224_consen 153 GGKL-KSRKGVNLPGVDLDLPALTEKDKEDIK-FAVENGVDFIALSFVRSAEDVKELRKILGEKG--KDIKIIAKIETKE 228 (348)
T ss_dssp -EEE-ESSEBEEETTS---S-SS-HHHHHHHH-HHHHTT-SEEEETTE-SHHHHHHHHHHHTCTT--TTSEEEEEE-SHH
T ss_pred CCCc-cCCccceecccccccccCCHHHHHHHH-HHHHcCCCEEEecCCCchHHHHHHHHHhhhcC--cccceeeccccHH
Confidence 9999 999999999999999999999999996 99999999999999999999999999999887 8899999999999
Q ss_pred hHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcC
Q 014746 262 GLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDG 340 (419)
Q Consensus 262 gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G 340 (419)
|++||++|+.+||||||||||||+|+|++++|.+||+|++.|+++|||||+ |||||||+++|+|||||++||+|||.||
T Consensus 229 ~v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg 308 (348)
T PF00224_consen 229 AVENLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDG 308 (348)
T ss_dssp HHHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT
T ss_pred HHhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CceEEecccccCCCCHHHHHHHHHHHHHHHhcCC
Q 014746 341 SDAILLGAETLRGLYPVETISIVGKICAEAKTTN 374 (419)
Q Consensus 341 ~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~~~ 374 (419)
+||+|||+|||+|+||+|||++|++||++||+.-
T Consensus 309 ~d~vmLs~ETa~G~~p~~~v~~~~~i~~~~E~~~ 342 (348)
T PF00224_consen 309 ADAVMLSGETAIGKYPVEAVKTMARIIREAEKYL 342 (348)
T ss_dssp -SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHTS
T ss_pred CCEEEecCCcCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999743
No 13
>PLN02623 pyruvate kinase
Probab=100.00 E-value=3e-103 Score=822.85 Aligned_cols=378 Identities=29% Similarity=0.515 Sum_probs=360.1
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhc-CCceEEEEecCCCeEEEeecC
Q 014746 26 FPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKST-KKLCAVMLDTIGPELLVVTKT 104 (419)
Q Consensus 26 ~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~-~~~i~Il~Dl~GPkIR~~~~~ 104 (419)
.+|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++. +++++||+||+|||||++..+
T Consensus 108 ~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~~ 187 (581)
T PLN02623 108 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 187 (581)
T ss_pred CCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccCC
Confidence 5689999999999999999999999999999999999999999999999999999986 599999999999999998776
Q ss_pred CCcEEeeCCCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcE
Q 014746 105 EHPISLLADESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAI 184 (419)
Q Consensus 105 ~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~ 184 (419)
+ ++.|++||+|+|+.+. ..++++.++++|++|++.+++||+||+| ||+|.|+| .+++++.++|+|++||.
T Consensus 188 ~-~i~l~~G~~v~lt~~~-~~g~~~~i~v~y~~l~~~v~~Gd~Ilid----DG~i~l~V----~~~~~~~v~~~V~~gG~ 257 (581)
T PLN02623 188 Q-PIMLEEGQEFTFTIKR-GVSTEDCVSVNYDDFVNDVEVGDMLLVD----GGMMSLAV----KSKTSDSVKCEVVDGGE 257 (581)
T ss_pred C-CEEecCCCEEEEecCc-cCCCCCEEeechHHHHhhCCCCCEEEEe----CCeEEEEE----EEEECCEEEEEEEeceE
Confidence 4 7999999999999874 4577889999999999999999999999 99999998 55678999999999999
Q ss_pred EecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHh
Q 014746 185 LARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLT 264 (419)
Q Consensus 185 l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~ 264 (419)
| +++||||+||+.+++|+|||+|++||+ |++++++|||++|||++++||+++++++.+.+ .++.||+||||++||+
T Consensus 258 L-~s~KgvNlpg~~~~lp~lTekD~~di~-f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~--~~~~iiakIEt~eaVe 333 (581)
T PLN02623 258 L-KSRRHLNVRGKSATLPSITEKDWEDIK-FGVENKVDFYAVSFVKDAQVVHELKDYLKSCN--ADIHVIVKIESADSIP 333 (581)
T ss_pred e-cCCCCCCCCCCcCCCCCCCHHHHHHHH-HHHHcCCCEEEECCCCCHHHHHHHHHHHHHcC--CcceEEEEECCHHHHH
Confidence 9 999999999999999999999999996 99999999999999999999999999999887 7899999999999999
Q ss_pred hHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCce
Q 014746 265 HFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDA 343 (419)
Q Consensus 265 nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~ 343 (419)
|+++|++.+|||||||||||+++|+++++.+|++|+++|+++|||+|+ |||||||+.+|.|||||++|++|++.+|+|+
T Consensus 334 NldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~ 413 (581)
T PLN02623 334 NLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADA 413 (581)
T ss_pred hHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCE
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHHHHhc---------------------------------------------------
Q 014746 344 ILLGAETLRGLYPVETISIVGKICAEAKT--------------------------------------------------- 372 (419)
Q Consensus 344 vmLs~ETa~G~yP~eaV~~~~~I~~~aE~--------------------------------------------------- 372 (419)
+|||+||+.|+||+|||++|++||+++|+
T Consensus 414 vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A~~l~a~Ivv~T~sG~tA~~l 493 (581)
T PLN02623 414 VMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMANTLGTSIIVFTRTGFMAILL 493 (581)
T ss_pred EEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHHHhcCCcEEEECCCcHHHHHH
Confidence 99999999999999999999999999993
Q ss_pred ----------------------------------CCcChHHHHHHHHHHHHHCCCCCCCCEEEEEee-----c--CCccE
Q 014746 373 ----------------------------------TNATSESALKVALDYGKAHGVIKSHDRVVICQK-----V--GDSAV 411 (419)
Q Consensus 373 ----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g-----~--g~tn~ 411 (419)
...+.+++++.|+++++++|++++||.||+++| + |+||+
T Consensus 494 Sr~RP~~pI~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~vviv~g~~~p~~~~g~tn~ 573 (581)
T PLN02623 494 SHYRPSGTIFAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMVKEGEEVALVQSGRQPIWRSESTHH 573 (581)
T ss_pred HhhCCCCCEEEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeccCCCCCCCCCCeE
Confidence 013678999999999999999999999999987 2 79999
Q ss_pred EEEEEc
Q 014746 412 VKIMEL 417 (419)
Q Consensus 412 ~~i~~~ 417 (419)
+||+++
T Consensus 574 i~V~~v 579 (581)
T PLN02623 574 IQVRKV 579 (581)
T ss_pred EEEEEe
Confidence 999886
No 14
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=4.6e-100 Score=785.98 Aligned_cols=352 Identities=34% Similarity=0.584 Sum_probs=333.5
Q ss_pred CCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEEEeecCCCcEEeeCCCEEEEeeCC--CCCCCcCeE
Q 014746 54 MSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELLVVTKTEHPISLLADESVVLTPDQ--DKEATSNLL 131 (419)
Q Consensus 54 m~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR~~~~~~~~i~l~~G~~v~lt~~~--~~~~~~~~i 131 (419)
|||||||||||++++|+++++++|++++++|++++||+|||||||||+..+++++.|++||+++|+.+. ...++.+.+
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~~~i~il~Dl~GPkiR~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~~~i 80 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGLFVGGEAVMERGATCYVTTDPAFADKGTKDKF 80 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeccccCCCcEEecCCCEEEEEeccccccCCCCCEE
Confidence 899999999999999999999999999999999999999999999998877667999999999999874 245777899
Q ss_pred eccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecC-CeEEEEEEeCcEEecCCcceeecCceecCCCCCccCHH
Q 014746 132 PINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDG-EDVVCQIKNSAILARQLYTLHVSQIRIDLPTLTDKDKE 210 (419)
Q Consensus 132 ~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~-~~i~~~v~~gG~l~~~~Kgvnlp~~~~~lp~lte~D~~ 210 (419)
+++|++|++.+++||.||+| ||+|.|+| .++++ +.++|+|++||.| +++||||+||+.+++|.+|++|.+
T Consensus 81 ~v~~~~l~~~v~~G~~ilid----DG~i~l~V----~~~~~~~~v~~~v~~gG~l-~~~kgvnlp~~~~~l~~ltekD~~ 151 (454)
T PTZ00300 81 YIDYQNLSKVVRPGGYIYID----DGILILHV----QSHEDEQTLKCTVTNAHTI-SDRRGVNLPGCDVDLPAVSAKDCA 151 (454)
T ss_pred EecCcccccccCCCCEEEEe----CCeEEEEE----EEEcCCceEEEEEecCcEe-cCCCccccCCCccCCCCCChhhHH
Confidence 99999999999999999999 99999999 44454 6899999999999 999999999999999999999999
Q ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCch
Q 014746 211 VISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPE 290 (419)
Q Consensus 211 di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e 290 (419)
+|+ |++++|+|||++|||++++|++++++++++.+ .++.|||||||++||+|+++|+..+|||||||||||+|+|.+
T Consensus 152 dI~-~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~--~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e 228 (454)
T PTZ00300 152 DLQ-FGVEQGVDMIFASFIRSAEQVGEVRKALGAKG--GDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAE 228 (454)
T ss_pred HHH-HHHHCCCCEEEECCCCCHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChH
Confidence 996 99999999999999999999999999998877 789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHH
Q 014746 291 KVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 291 ~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~ 369 (419)
+++.+|++|+++|+++|||+|+ |||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||++
T Consensus 229 ~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~ 308 (454)
T PTZ00300 229 KVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLE 308 (454)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhc-----------------------------------------------------------------------------
Q 014746 370 AKT----------------------------------------------------------------------------- 372 (419)
Q Consensus 370 aE~----------------------------------------------------------------------------- 372 (419)
||+
T Consensus 309 aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~t~~~~~ar~l~ 388 (454)
T PTZ00300 309 AQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLN 388 (454)
T ss_pred HHhhhchhhhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhh
Confidence 883
Q ss_pred -----------C-----CcChHHHHHHHHHHHHHCCCCCCCCEEEEEeec----CCccEEEEEEc
Q 014746 373 -----------T-----NATSESALKVALDYGKAHGVIKSHDRVVICQKV----GDSAVVKIMEL 417 (419)
Q Consensus 373 -----------~-----~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~----g~tn~~~i~~~ 417 (419)
. ..+.+.++..|+++++++|++++||.||+++|+ |+||++||+.+
T Consensus 389 l~~GV~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~~~~~g~tn~i~v~~~ 453 (454)
T PTZ00300 389 ITQGVESVFFDAERLGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYANQTRIILV 453 (454)
T ss_pred cccCcEEEEeccccccccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEe
Confidence 0 123568999999999999999999999999997 89999999976
No 15
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=2.8e-99 Score=789.10 Aligned_cols=376 Identities=39% Similarity=0.664 Sum_probs=355.7
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEEEeecCCCc
Q 014746 28 AMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELLVVTKTEHP 107 (419)
Q Consensus 28 ~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR~~~~~~~~ 107 (419)
|+||||||+||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|++++||+||+|||||++...+++
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~~~~~i~~Dl~GpkiR~g~~~~~~ 80 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGRPVAILLDTKGPEIRTGEIKGGP 80 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeccccCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998877668
Q ss_pred EEeeCCCEEEEeeCC-CCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcEEe
Q 014746 108 ISLLADESVVLTPDQ-DKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAILA 186 (419)
Q Consensus 108 i~l~~G~~v~lt~~~-~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~l~ 186 (419)
+.|++||.|+|+.+. ...++.+.|+++|++|++.+++||.||+| ||+|.|+| .+++++.++|+|++||.|
T Consensus 81 ~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~id----dG~i~l~V----~~~~~~~~~~~v~~~g~l- 151 (473)
T TIGR01064 81 VKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVD----DGKISLVV----VSVEGDKVICEVLNGGTL- 151 (473)
T ss_pred eecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEe----CCeEEEEE----EEEECCEEEEEEEeCcEE-
Confidence 999999999999874 24577889999999999999999999999 99999998 556789999999999999
Q ss_pred cCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhH
Q 014746 187 RQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHF 266 (419)
Q Consensus 187 ~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl 266 (419)
+++||||+||+.+++|+||++|.+||. |+++.|+|+|++|||++++||+.+++++.+.+. .++.|||||||++|++|+
T Consensus 152 ~~~kgvn~p~~~~~~~~ltekD~~Dl~-~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~-~~~~Iia~IEt~~av~nl 229 (473)
T TIGR01064 152 KSKKGVNLPGADVDLPALSEKDKKDLK-FGVEQGVDMVAASFVRTAEDVLEVREVLGEKGA-KDVKIIAKIENQEGVDNI 229 (473)
T ss_pred cCCceeecCCCccCCCCCCHHHHHHHH-HHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCC-CCceEEEEECCHHHHHhH
Confidence 999999999999999999999999996 999999999999999999999999999987652 368999999999999999
Q ss_pred HHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEE
Q 014746 267 DEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAIL 345 (419)
Q Consensus 267 ~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vm 345 (419)
++|++++||+|+|||||++++|.++++.+|++|+.+|+++|||+|+ |||||||+.||+|||||++|++|++.+|+|++|
T Consensus 230 ~eI~~~~dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ 309 (473)
T TIGR01064 230 DEIAEASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVM 309 (473)
T ss_pred HHHHhhCCcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEE
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHHHHhc-----------------------------------------------------
Q 014746 346 LGAETLRGLYPVETISIVGKICAEAKT----------------------------------------------------- 372 (419)
Q Consensus 346 Ls~ETa~G~yP~eaV~~~~~I~~~aE~----------------------------------------------------- 372 (419)
||+||+.|+||+|||++|++||+++|+
T Consensus 310 ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~ 389 (473)
T TIGR01064 310 LSGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARL 389 (473)
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHH
Confidence 999999999999999999999998873
Q ss_pred ----------------------------------C--CcChHHHHHHHHHHHHHCCCCCCCCEEEEEeec------CCcc
Q 014746 373 ----------------------------------T--NATSESALKVALDYGKAHGVIKSHDRVVICQKV------GDSA 410 (419)
Q Consensus 373 ----------------------------------~--~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~------g~tn 410 (419)
. ..+.++++..|++++++.|++++||.||+++|| |+||
T Consensus 390 vSr~rp~~PIiAvT~~~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~~~gl~~~GD~VVvv~g~~~~~~~~~~n 469 (473)
T TIGR01064 390 LSKYRPNAPIIAVTPNERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLKEKGILKKGDLVVVIQGGAPIGGVGGTN 469 (473)
T ss_pred HHhhCCCCCEEEEcCCHHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCe
Confidence 0 125688899999999999999999999999994 7899
Q ss_pred EEEE
Q 014746 411 VVKI 414 (419)
Q Consensus 411 ~~~i 414 (419)
.+||
T Consensus 470 ~i~v 473 (473)
T TIGR01064 470 TIRV 473 (473)
T ss_pred EEeC
Confidence 9875
No 16
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-97 Score=756.77 Aligned_cols=382 Identities=43% Similarity=0.721 Sum_probs=361.0
Q ss_pred CCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCc-eEEEEecCCCeEEEee
Q 014746 24 TFFPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKL-CAVMLDTIGPELLVVT 102 (419)
Q Consensus 24 ~~~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~-i~Il~Dl~GPkIR~~~ 102 (419)
+...|+|||+||+||++++.|+|++|+++|||++|+|||||++++|++.++|+|++.+.++.+ ++|++|++||++||+.
T Consensus 17 ~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~~ai~LDtkGpEirtg~ 96 (501)
T KOG2323|consen 17 PKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALPCAIMLDTKGPEIRTGD 96 (501)
T ss_pred cccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhcCCcchhhhhccCCCeEeecc
Confidence 346789999999999999999999999999999999999999999999999999999988765 9999999999999976
Q ss_pred cCC-CcEEeeCCCEEEEeeCCCCCCC-cCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEE
Q 014746 103 KTE-HPISLLADESVVLTPDQDKEAT-SNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIK 180 (419)
Q Consensus 103 ~~~-~~i~l~~G~~v~lt~~~~~~~~-~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~ 180 (419)
.++ .++.|++|+.++||++.+...+ .+.+++||+++.++|++||.||+| ||.+.+.| . ++..+.+.|+|.
T Consensus 97 ~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vd----dgi~s~~V-~---~~~~~~~~c~v~ 168 (501)
T KOG2323|consen 97 LKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVD----DGLISLIV-K---SVSKDEVTCRVE 168 (501)
T ss_pred cCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEEC----CceeeeEE-E---EeecCceEEEEe
Confidence 654 4899999999999999764333 789999999999999999999999 99999999 4 445569999999
Q ss_pred eCcEEecCCcc-eeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecC
Q 014746 181 NSAILARQLYT-LHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIEN 259 (419)
Q Consensus 181 ~gG~l~~~~Kg-vnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt 259 (419)
|+|.+ +|+|+ +|+||+..++|+|||+|.+||+ |++++++|+|++||||.++|+.++|+.|++.+ .+++||+|||+
T Consensus 169 n~g~l-~s~k~~vnlpg~~vdlp~ltekd~~dl~-fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g--~~ikiisKIEn 244 (501)
T KOG2323|consen 169 NGGML-GSRKGNVNLPGTHVDLPALTEKDEKDLK-FGVENKVDMIFASFIRKASDVREVRKVLGESG--KNIKLISKIEN 244 (501)
T ss_pred cCccc-ccccCcccCCCccccCCccChhhHHHHh-cCCCCCCCEEEeeeeeehHHHHHHHHHhCccC--CcceEEEEech
Confidence 99999 99999 9999999999999999999996 99999999999999999999999999999877 89999999999
Q ss_pred HHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHH
Q 014746 260 TEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL 338 (419)
Q Consensus 260 ~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~ 338 (419)
.+|+.|+|+|+.++||+|++|||||+|+|.|+++.+||.+|.+|+.+|||||+ |||||||+.+|+|||||.+||+|||+
T Consensus 245 ~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAVL 324 (501)
T KOG2323|consen 245 QEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAVL 324 (501)
T ss_pred hhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCceEEecccccCCCCHHHHHHHHHHHHHHHhc----------------------------------------------
Q 014746 339 DGSDAILLGAETLRGLYPVETISIVGKICAEAKT---------------------------------------------- 372 (419)
Q Consensus 339 ~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~---------------------------------------------- 372 (419)
||+||+|||+|||.|+||++||++|+.||.+||.
T Consensus 325 dg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~a~aIvv~T~ 404 (501)
T KOG2323|consen 325 DGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKCLASAIVVLTK 404 (501)
T ss_pred ccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHhhcceEEEEEec
Confidence 9999999999999999999999999999999998
Q ss_pred ------------------------------------------------CCcChHHHHHHHHHHHHHCCCCCCCCEEEEEe
Q 014746 373 ------------------------------------------------TNATSESALKVALDYGKAHGVIKSHDRVVICQ 404 (419)
Q Consensus 373 ------------------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~ 404 (419)
..++.|+.++++++.+++.|+++.||.+|+++
T Consensus 405 sg~~a~lvskyrP~~PIi~vt~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k~~g~~k~gd~~vvv~ 484 (501)
T KOG2323|consen 405 SGYTAILVSKYRPSVPIISVTRPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGKKKGILKKGDVVVVVN 484 (501)
T ss_pred CcccHHHHhccCCCCCEEEEeccHHHHHHHHhhccceeeeecccchhhhhhhHHHHHHHHHHHHHhcchhhcCCEEEEEe
Confidence 11478999999999999999999999888899
Q ss_pred ec----CCccEEEEEEc
Q 014746 405 KV----GDSAVVKIMEL 417 (419)
Q Consensus 405 g~----g~tn~~~i~~~ 417 (419)
+| |.+|++++.++
T Consensus 485 ~~~~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 485 KGKGGASVTNTIRVEKV 501 (501)
T ss_pred cccCCccceeeEEEeeC
Confidence 99 89999998764
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=5.2e-95 Score=760.49 Aligned_cols=337 Identities=26% Similarity=0.434 Sum_probs=315.0
Q ss_pred cccCCCCCCCCCCCeEEEEecC-CCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecC
Q 014746 16 SILEPSKPTFFPAMTKIVGTLG-PRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTI 94 (419)
Q Consensus 16 ~~~~~~~~~~~~~~tkIi~TiG-p~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~ 94 (419)
.+|+|.++ .|+|||||||| |++++++.|++|+++||||||||||||++++|+++++++|++++++|++|+|++||+
T Consensus 130 ~l~G~~~~---~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~gr~~~I~mDL~ 206 (608)
T PRK14725 130 ALLGPPPS---GRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELGRRCRIAMDLA 206 (608)
T ss_pred HhcCCCCC---CCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35666554 58999999999 699999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeecCCC--------------------------------------------------------------------
Q 014746 95 GPELLVVTKTEH-------------------------------------------------------------------- 106 (419)
Q Consensus 95 GPkIR~~~~~~~-------------------------------------------------------------------- 106 (419)
||||||+...++
T Consensus 207 GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~~R~ 286 (608)
T PRK14725 207 GPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGDELRFTDARGKKRK 286 (608)
T ss_pred CCcceEEecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCceeeeeecccccee
Confidence 999999766433
Q ss_pred ---------------------------------------------cEEeeCCCEEEEeeCCCC----CCCcC--eEeccC
Q 014746 107 ---------------------------------------------PISLLADESVVLTPDQDK----EATSN--LLPINF 135 (419)
Q Consensus 107 ---------------------------------------------~i~l~~G~~v~lt~~~~~----~~~~~--~i~v~~ 135 (419)
++.|++||+++|+.+... .++.. .|+|+|
T Consensus 287 l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~~~~~~~i~~t~ 366 (608)
T PRK14725 287 LTVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQGDAPPARISCTL 366 (608)
T ss_pred eeEEeecCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccccCCCCccEEEech
Confidence 589999999999987421 12344 899999
Q ss_pred cccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEe----CcEEecCCcceeecCceecCCCCCccCHHH
Q 014746 136 SGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKN----SAILARQLYTLHVSQIRIDLPTLTDKDKEV 211 (419)
Q Consensus 136 ~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~----gG~l~~~~Kgvnlp~~~~~lp~lte~D~~d 211 (419)
+++++.+++||.||+| ||+|.++| .+++++.++|+|.+ ||.| +++||||+||+.+++|+||++|++|
T Consensus 367 p~l~~~v~~G~~Vlid----DG~I~l~V----~~~~~~~v~~~V~~a~~~gg~L-~s~KGiNlP~~~l~lp~LTekD~~d 437 (608)
T PRK14725 367 PEAFRAARVGERVWFD----DGKIGAVV----VKVEADEVELRITHARPGGSKL-KAGKGINLPDSHLPLPALTDKDLED 437 (608)
T ss_pred HHHHHhcCCCCEEEEe----CCeEEEEE----EEEECCEEEEEEEEecCCCCEe-cCCCceecCCCCCCCCCCCHHHHHH
Confidence 9999999999999999 99999999 55678999999999 9999 9999999999999999999999999
Q ss_pred HHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhC-----cEEEEeCCCccCC
Q 014746 212 ISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEA-----DGIILARGNLGVD 286 (419)
Q Consensus 212 i~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~s-----DgImIargDLg~e 286 (419)
|. |++++ +|||++|||++++||+.++++|.+.+. .++.|||||||++|++||++|+.++ |||||||||||+|
T Consensus 438 l~-f~~~~-vD~ValSFVrs~~DV~~lr~~L~~~g~-~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvE 514 (608)
T PRK14725 438 LA-FVAKH-ADIVALSFVRSPEDVRLLLDALEKLGA-DDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVE 514 (608)
T ss_pred HH-HHHHh-CCEEEECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccc
Confidence 96 99999 999999999999999999999988763 4799999999999999999999986 9999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHH
Q 014746 287 LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGK 365 (419)
Q Consensus 287 lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~ 365 (419)
+|++++|.+||+|++.|+++|||||| |||||||++||.|||||++|||||+ |+||+||| +|+||+|||++|++
T Consensus 515 i~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~ 588 (608)
T PRK14725 515 VGFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDD 588 (608)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999 99999999 99999999999999
Q ss_pred HHHHHhcC
Q 014746 366 ICAEAKTT 373 (419)
Q Consensus 366 I~~~aE~~ 373 (419)
||+++|+.
T Consensus 589 I~~r~e~~ 596 (608)
T PRK14725 589 ILRRMEEH 596 (608)
T ss_pred HHHHHHHh
Confidence 99999973
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=3.3e-93 Score=741.36 Aligned_cols=338 Identities=22% Similarity=0.384 Sum_probs=313.6
Q ss_pred cccCCCCCCCCCCCeEEEEec-CCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecC
Q 014746 16 SILEPSKPTFFPAMTKIVGTL-GPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTI 94 (419)
Q Consensus 16 ~~~~~~~~~~~~~~tkIi~Ti-Gp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~ 94 (419)
.+|+|.++ +|+||||||| ||+++++++|++|+++||||||||||||++++|+++++++|++++++|++|+||+||+
T Consensus 124 ~l~g~~~~---~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g~~i~Il~DL~ 200 (493)
T PRK08187 124 ELFGPRPA---ARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERATGRRCKILMDLA 200 (493)
T ss_pred HHcCCCcC---CCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35565554 5899999999 5999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeecCC--CcEEeeCCCEEEEeeCCCCC---CCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEe
Q 014746 95 GPELLVVTKTE--HPISLLADESVVLTPDQDKE---ATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTD 169 (419)
Q Consensus 95 GPkIR~~~~~~--~~i~l~~G~~v~lt~~~~~~---~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~ 169 (419)
||||||+...+ +++.|++||.|+|+.+.... ++...|+++|++|++.+++||.||+| ||+|.++| .+
T Consensus 201 GPKIRtG~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~Ilid----DG~I~l~V----~~ 272 (493)
T PRK08187 201 GPKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWID----DGKLGARV----ER 272 (493)
T ss_pred CCceeecccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEe----CCeEEEEE----EE
Confidence 99999977653 35899999999999874322 24568999999999999999999999 99999999 55
Q ss_pred ecCCeEEEEEE----eCcEEecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhc
Q 014746 170 VDGEDVVCQIK----NSAILARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQL 245 (419)
Q Consensus 170 v~~~~i~~~v~----~gG~l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~ 245 (419)
++++.+.|+|. +||+| +++|||||||+.+++|++|++|.+||. |+++ ++|+|++|||+|++||..++++|.+.
T Consensus 273 v~~~~v~~~V~~~~~~gg~L-~~~KgiNlP~~~vrin~LtekD~~DL~-f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~ 349 (493)
T PRK08187 273 VGPGGALLEVTHARPKGLKL-KPEKGLNFPDTALDLPALTEKDRADLD-FVAR-HADLVGYSFVQSPGDVEALQAALAAR 349 (493)
T ss_pred EeCCEEEEEEEEecCCCeEe-cCCCcccccCceecCCCCCHhHHHHHH-HHHh-cCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 67899999998 99999 999999999999999999999999996 8888 69999999999999999999999775
Q ss_pred CC--CCCceEEEEecCHHhHhhHHHHHhhCc-----EEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-Ecccc
Q 014746 246 GD--LGQTQIFAKIENTEGLTHFDEILHEAD-----GIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVD 317 (419)
Q Consensus 246 ~~--~~~~~IiaKIEt~~gv~nl~eI~~~sD-----gImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLe 317 (419)
+. ..++.|||||||++|++|+++|+.++| |||||||||++|+|++++|.+|++|+++|+++|||+|| |||||
T Consensus 350 ~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLE 429 (493)
T PRK08187 350 RPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLE 429 (493)
T ss_pred CCCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhH
Confidence 41 147899999999999999999998887 99999999999999999999999999999999999999 99999
Q ss_pred ccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHhcC
Q 014746 318 SMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAKTT 373 (419)
Q Consensus 318 SM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~~ 373 (419)
||++||.|||||++||||| ||+||+||| +|+||+|||++|++|+.++|+.
T Consensus 430 SM~~~p~PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~ 479 (493)
T PRK08187 430 GLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGH 479 (493)
T ss_pred hhccCCCCchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998 999999999 9999999999999999999973
No 19
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.69 E-value=2.3e-16 Score=153.03 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=110.0
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHH--------------------------HhcCCCCCceEEEEe
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFL--------------------------SQLGDLGQTQIFAKI 257 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l--------------------------~~~~~~~~~~IiaKI 257 (419)
+...|...++ .++|.|+++|++|+|+|++|++++.+.. +..+ .++.++++|
T Consensus 69 vp~~~~~~i~-r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n--~~~~vi~~I 145 (249)
T TIGR03239 69 PPWNEPVIIK-RLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATIN--DNITVLVQI 145 (249)
T ss_pred CCCCCHHHHH-HHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhc--cccEEEEEE
Confidence 3456788886 7899999999999999999999998543 2333 678999999
Q ss_pred cCHHhHhhHHHHHhh--CcEEEEeCCCccCCCCc------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchh
Q 014746 258 ENTEGLTHFDEILHE--ADGIILARGNLGVDLPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRA 328 (419)
Q Consensus 258 Et~~gv~nl~eI~~~--sDgImIargDLg~elg~------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~Ptra 328 (419)
||++|++|+++|+++ .|++++|++||+.++|. +++..+.++++.+|+++|||+++ .. .|
T Consensus 146 Et~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~~---------~~--- 213 (249)
T TIGR03239 146 ESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILAP---------VE--- 213 (249)
T ss_pred CCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcCC---------CH---
Confidence 999999999999987 69999999999999987 36777778999999999999986 21 22
Q ss_pred hHhHHHHHHHcCCceEEeccccc
Q 014746 329 EATDVANAVLDGSDAILLGAETL 351 (419)
Q Consensus 329 Ev~Dv~nav~~G~D~vmLs~ETa 351 (419)
.+...++..|++.++++.++.
T Consensus 214 --~~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 214 --ADARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred --HHHHHHHHcCCCEEEEhHHHH
Confidence 355777889999999987754
No 20
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.68 E-value=2.9e-16 Score=152.97 Aligned_cols=133 Identities=18% Similarity=0.252 Sum_probs=110.6
Q ss_pred CCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHH--------------------------HhcCCCCCceEEEE
Q 014746 203 TLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFL--------------------------SQLGDLGQTQIFAK 256 (419)
Q Consensus 203 ~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l--------------------------~~~~~~~~~~IiaK 256 (419)
.++..|...++ .++|.|+++|++|+|+|++|++++.+.+ +..+ .++.++++
T Consensus 75 Rvp~~~~~~i~-r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an--~~~~vi~~ 151 (256)
T PRK10558 75 RVPTNEPVIIK-RLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSN--KNITVLVQ 151 (256)
T ss_pred ECCCCCHHHHH-HHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhc--cccEEEEE
Confidence 34566888896 7899999999999999999999987644 3333 67889999
Q ss_pred ecCHHhHhhHHHHHhh--CcEEEEeCCCccCCCCc------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcch
Q 014746 257 IENTEGLTHFDEILHE--ADGIILARGNLGVDLPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTR 327 (419)
Q Consensus 257 IEt~~gv~nl~eI~~~--sDgImIargDLg~elg~------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~Ptr 327 (419)
|||++|++|+++|+++ .|++++|++||+.++|. +++..+.++++.+|+++|||+++ . ++-
T Consensus 152 IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~~-----------~~~ 220 (256)
T PRK10558 152 IESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGILA-----------PVE 220 (256)
T ss_pred ECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEcC-----------CCH
Confidence 9999999999999987 59999999999999986 36777788999999999999986 2 221
Q ss_pred hhHhHHHHHHHcCCceEEecccccC
Q 014746 328 AEATDVANAVLDGSDAILLGAETLR 352 (419)
Q Consensus 328 aEv~Dv~nav~~G~D~vmLs~ETa~ 352 (419)
.+...++..|++.++++.++..
T Consensus 221 ---~~~~~~~~~G~~~v~~~~D~~~ 242 (256)
T PRK10558 221 ---ADARRYLEWGATFVAVGSDLGV 242 (256)
T ss_pred ---HHHHHHHHcCCCEEEEchHHHH
Confidence 3356778889999999877543
No 21
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.64 E-value=1.4e-15 Score=148.84 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=108.9
Q ss_pred CccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHH-----hcC--------------------CCCCceEEEEecC
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLS-----QLG--------------------DLGQTQIFAKIEN 259 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~-----~~~--------------------~~~~~~IiaKIEt 259 (419)
...|...++ .++|.|+++|++|+|+|+++++++.+..+ .++ .+.++.+++||||
T Consensus 76 p~~~~~~i~-r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt 154 (267)
T PRK10128 76 VEGSKPLIK-QVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVES 154 (267)
T ss_pred CCCCHHHHH-HHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECC
Confidence 345677886 78999999999999999999999998762 111 1257889999999
Q ss_pred HHhHhhHHHHHhh--CcEEEEeCCCccCCCCc------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhH
Q 014746 260 TEGLTHFDEILHE--ADGIILARGNLGVDLPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEA 330 (419)
Q Consensus 260 ~~gv~nl~eI~~~--sDgImIargDLg~elg~------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv 330 (419)
++|++|+++|+++ .|++++|++||+.++|+ +++..+.++++++|+++|||+++ .. .|
T Consensus 155 ~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~~---------~~----- 220 (267)
T PRK10128 155 KTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAV---------DP----- 220 (267)
T ss_pred HHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcCC---------CH-----
Confidence 9999999999998 59999999999999996 46667779999999999999986 22 12
Q ss_pred hHHHHHHHcCCceEEeccccc
Q 014746 331 TDVANAVLDGSDAILLGAETL 351 (419)
Q Consensus 331 ~Dv~nav~~G~D~vmLs~ETa 351 (419)
.+...++..|++.+.++.++.
T Consensus 221 ~~a~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 221 DMAQKCLAWGANFVAVGVDTM 241 (267)
T ss_pred HHHHHHHHcCCcEEEEChHHH
Confidence 445677888999999987753
No 22
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=6e-15 Score=139.47 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=106.6
Q ss_pred CCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHH---------------------------HhcCCCCCceEEE
Q 014746 203 TLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFL---------------------------SQLGDLGQTQIFA 255 (419)
Q Consensus 203 ~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l---------------------------~~~~~~~~~~Iia 255 (419)
.++..+...|+ .++|.|+..+.+|+|+|+|+.+.+.+.. ..++ +++.+++
T Consensus 73 R~p~g~~~~Ik-q~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An--~~~~~lv 149 (255)
T COG3836 73 RPPVGDPVMIK-QLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQAN--DEICLLV 149 (255)
T ss_pred eCCCCCHHHHH-HHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcc--cceEEEE
Confidence 34567788887 6799999999999999999999998654 3344 8899999
Q ss_pred EecCHHhHhhHHHHHhh--CcEEEEeCCCccCCCCc------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcc
Q 014746 256 KIENTEGLTHFDEILHE--ADGIILARGNLGVDLPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPT 326 (419)
Q Consensus 256 KIEt~~gv~nl~eI~~~--sDgImIargDLg~elg~------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~Pt 326 (419)
||||++|++|||+|+++ .|||||||+||+.++|+ +++..+.+.++.+.+++||..++ +- .|
T Consensus 150 qiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~~---------~p- 219 (255)
T COG3836 150 QIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILAA---------DP- 219 (255)
T ss_pred EEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCccccccC---------CH-
Confidence 99999999999999998 59999999999999998 35555557889999999999987 42 23
Q ss_pred hhhHhHHHHHHHcCCceEEecccc
Q 014746 327 RAEATDVANAVLDGSDAILLGAET 350 (419)
Q Consensus 327 raEv~Dv~nav~~G~D~vmLs~ET 350 (419)
.+...+...|+..+-+..+|
T Consensus 220 ----~~a~~yl~lGa~fvavG~D~ 239 (255)
T COG3836 220 ----ADARRYLALGATFVAVGSDT 239 (255)
T ss_pred ----HHHHHHHHhCCeEEEEeccH
Confidence 33466666777777766554
No 23
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.59 E-value=9e-15 Score=142.00 Aligned_cols=131 Identities=20% Similarity=0.190 Sum_probs=106.9
Q ss_pred ccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhc-----CC--------------------CCCceEEEEecCH
Q 014746 206 DKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQL-----GD--------------------LGQTQIFAKIENT 260 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~-----~~--------------------~~~~~IiaKIEt~ 260 (419)
..|..+|. .+++.|+|+|++|+|+|++|++++.+.++.. +. +.++.++++|||+
T Consensus 71 ~~~~~~i~-~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~ 149 (249)
T TIGR02311 71 IGDPVLIK-QLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETR 149 (249)
T ss_pred CCCHHHHH-HHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCH
Confidence 34556886 7899999999999999999999999988521 10 1257799999999
Q ss_pred HhHhhHHHHHhh--CcEEEEeCCCccCCCCc------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHh
Q 014746 261 EGLTHFDEILHE--ADGIILARGNLGVDLPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEAT 331 (419)
Q Consensus 261 ~gv~nl~eI~~~--sDgImIargDLg~elg~------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~ 331 (419)
+|++|+++|+++ .|++++|++||+.++|. +++..+.+++..+|+.+||+.++ .. .| .
T Consensus 150 ~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~~---------~~-----~ 215 (249)
T TIGR02311 150 EALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILTA---------DP-----K 215 (249)
T ss_pred HHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecCC---------CH-----H
Confidence 999999999987 49999999999999997 34556667899999999999986 32 12 3
Q ss_pred HHHHHHHcCCceEEeccccc
Q 014746 332 DVANAVLDGSDAILLGAETL 351 (419)
Q Consensus 332 Dv~nav~~G~D~vmLs~ETa 351 (419)
+...++..|++.++++.|+.
T Consensus 216 ~~~~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 216 LARQYLKLGALFVAVGVDTT 235 (249)
T ss_pred HHHHHHHcCCCEEEEchHHH
Confidence 45677889999999987754
No 24
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.54 E-value=4.7e-15 Score=140.99 Aligned_cols=132 Identities=23% Similarity=0.272 Sum_probs=99.1
Q ss_pred CHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCC-----CCCceEEEEecCHHhHhhHHHHHhhC--cEEEEeC
Q 014746 208 DKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGD-----LGQTQIFAKIENTEGLTHFDEILHEA--DGIILAR 280 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~-----~~~~~IiaKIEt~~gv~nl~eI~~~s--DgImIar 280 (419)
-.+||. +++.|+|+|++|+|+|++|++.+.+++..... +.++.++++|||++||+|+++|++.. |++++|+
T Consensus 74 ~~~Dl~--~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~ 151 (221)
T PF03328_consen 74 IERDLE--ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGP 151 (221)
T ss_dssp HHHHHH--HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-H
T ss_pred hhhhhh--hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCc
Confidence 345674 69999999999999999999999999875421 14588999999999999999999553 8999999
Q ss_pred CCccCCCCc------hhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 281 GNLGVDLPP------EKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 281 gDLg~elg~------e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
+||+.++|. +.+..+.++++.+|+++|+|++.+- ..+..-...-..++++++..|.|+-++
T Consensus 152 ~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~~-----~~~~~d~~~~~~~~~~~~~~G~dg~~~ 218 (221)
T PF03328_consen 152 ADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDGV-----FPDFEDAEGLEAEGFRARALGFDGKLC 218 (221)
T ss_dssp HHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEEE-----ESSSSHHHHHHHHHHHCCEEEEHHCCC
T ss_pred HHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEEe-----eCCHHHHHHHHHHHHHHHHHccccccc
Confidence 999999998 3578888999999999999776521 112222233346677777777776543
No 25
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.37 E-value=2.1e-12 Score=128.04 Aligned_cols=134 Identities=23% Similarity=0.259 Sum_probs=104.3
Q ss_pred CccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcC-----CCCCceEEEEecCHHhHhhHHHHHhhC---cEE
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLG-----DLGQTQIFAKIENTEGLTHFDEILHEA---DGI 276 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~-----~~~~~~IiaKIEt~~gv~nl~eI~~~s---DgI 276 (419)
|++...||. ..++.|+++|++|+|++++|++.+.+++...+ .+.++.++++|||++|+.|+++|++++ |++
T Consensus 71 ~~~~~~di~-~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l 149 (288)
T TIGR01588 71 TPFGLADIK-AVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGI 149 (288)
T ss_pred ChhHHHHHH-HHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEE
Confidence 446678886 77999999999999999999999998886421 113578999999999999999999653 799
Q ss_pred EEeCCCccCCCCch------hHHHHHHHHHHHHHHcCCcEEE--EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 277 ILARGNLGVDLPPE------KVFLFQKAALYKCNMAGKPAVV--TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 277 mIargDLg~elg~e------~v~~~qk~Ii~a~~~~gkpvi~--TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
++|+.||+.++|.. .+..+..+++.+|+++|+++|. ++=+ ++. -.=..+..++-..|.++-+.
T Consensus 150 ~~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id~v~~~~----~d~---~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 150 ALGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFDTVYSDV----NNE---EGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred EeCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcccCCccCc----CCH---HHHHHHHHHHHHcCCCceec
Confidence 99999999999872 5778889999999999999975 2211 111 11124455677788877665
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.33 E-value=7.7e-12 Score=138.89 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=117.4
Q ss_pred CCCCccCHHHHHHHhh-hcCCcE--EEEecCCCHHHHHHHHHHHHhcCC---CCCceEEEEecCHHhHhhHHHHHhhCcE
Q 014746 202 PTLTDKDKEVISTWGA-RNNIDF--LSLSHTRGAEDVRHARDFLSQLGD---LGQTQIFAKIENTEGLTHFDEILHEADG 275 (419)
Q Consensus 202 p~lte~D~~di~~~~l-~~g~d~--I~lsfV~saedv~~v~~~l~~~~~---~~~~~IiaKIEt~~gv~nl~eI~~~sDg 275 (419)
|.+-....+.|. .++ +.|+.. |++|||+|+++++++++.+...+. +.++.+++||||+.|+.|+++|+++.|+
T Consensus 609 ~~lf~~qlraI~-ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDf 687 (782)
T TIGR01418 609 EEAFRLECRAIK-RVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDG 687 (782)
T ss_pred HHHHHHHHHHHH-HHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCE
Confidence 334445566675 556 889988 999999999999999999876542 2348999999999999999999999999
Q ss_pred EEEeCCCccC-CCCc---------------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHH
Q 014746 276 IILARGNLGV-DLPP---------------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL 338 (419)
Q Consensus 276 ImIargDLg~-elg~---------------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~ 338 (419)
++||++||+. .++. +.+..+.++++++|+++|||+.+ .+|. . ..| ..+...+.
T Consensus 688 isIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~----~-~~p-----~~~~~l~~ 757 (782)
T TIGR01418 688 FSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAP----S-DYP-----EVVEFLVE 757 (782)
T ss_pred EEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC----C-CCH-----HHHHHHHH
Confidence 9999999997 4443 46777779999999999999997 5422 0 012 23457778
Q ss_pred cCCceEEecccccCCCCHHHHHHHHHHHHHHHhc
Q 014746 339 DGSDAILLGAETLRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 339 ~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~ 372 (419)
.|.+.+..+.+ ++-.++..++++|+
T Consensus 758 ~G~~~ls~~~d---------~~~~~k~~i~~~e~ 782 (782)
T TIGR01418 758 EGIDSISLNPD---------AVLRTRLQVAEVEK 782 (782)
T ss_pred cCCCEEEECcc---------hHHHHHHHHHHhcC
Confidence 89999998844 55566777777774
No 27
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.31 E-value=1.5e-11 Score=136.60 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=116.0
Q ss_pred CCccCHHHHHHHhhh-cCCcE--EEEecCCCHHHHHHHHHHHHhcCC---CCCceEEEEecCHHhHhhHHHHHhhCcEEE
Q 014746 204 LTDKDKEVISTWGAR-NNIDF--LSLSHTRGAEDVRHARDFLSQLGD---LGQTQIFAKIENTEGLTHFDEILHEADGII 277 (419)
Q Consensus 204 lte~D~~di~~~~l~-~g~d~--I~lsfV~saedv~~v~~~l~~~~~---~~~~~IiaKIEt~~gv~nl~eI~~~sDgIm 277 (419)
+-....+.|. .+++ .|++. |++|||+|+++++++++.++..+. +.++.+++||||+.|+.|+++|+++.|+++
T Consensus 618 lf~~qlraI~-rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~ 696 (795)
T PRK06464 618 AFALECEAIK-RVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFS 696 (795)
T ss_pred HHHHHHHHHH-HHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEE
Confidence 3345667776 6688 79988 999999999999999999876542 236899999999999999999999999999
Q ss_pred EeCCCccCC-CCc---------------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcC
Q 014746 278 LARGNLGVD-LPP---------------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDG 340 (419)
Q Consensus 278 IargDLg~e-lg~---------------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G 340 (419)
||++||+.. +|. +.+..+.++++++|+++|||+.+ .+|.. + .| ..+...+..|
T Consensus 697 IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~----~-~p-----~~~~~l~~~G 766 (795)
T PRK06464 697 IGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPS----D-HP-----DFAEWLVEEG 766 (795)
T ss_pred ECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCC----C-cH-----HHHHHHHHCC
Confidence 999999973 442 46777779999999999999998 66331 1 02 2235667789
Q ss_pred CceEEecccccCCCCHHHHHHHHHHHHHHHhc
Q 014746 341 SDAILLGAETLRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 341 ~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~ 372 (419)
.+.+..+.+ ++-.++..++++|+
T Consensus 767 ~~~ls~~~d---------~~~~~k~~i~~~~~ 789 (795)
T PRK06464 767 IDSISLNPD---------AVVDTWLAVAEVEK 789 (795)
T ss_pred CCEEEEcch---------hHHHHHHHHHHhHH
Confidence 999988743 45555666666654
No 28
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.20 E-value=1.5e-10 Score=124.45 Aligned_cols=135 Identities=11% Similarity=0.040 Sum_probs=107.7
Q ss_pred CCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhc-------C--CCCCceEEEEecCHHhHhhHHHHHh
Q 014746 201 LPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQL-------G--DLGQTQIFAKIENTEGLTHFDEILH 271 (419)
Q Consensus 201 lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~-------~--~~~~~~IiaKIEt~~gv~nl~eI~~ 271 (419)
-|.+-....+.|. .+++.|...|++|||+++++++++++.+... + .+.++.+.++||||.|+.++++|++
T Consensus 365 ~~~lf~~QlrAI~-ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~ 443 (565)
T TIGR01417 365 REEILRTQLRAIL-RASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAK 443 (565)
T ss_pred CHHHHHHHHHHHH-HHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHh
Confidence 3444455566775 6789999999999999999999999988641 1 1256899999999999999999999
Q ss_pred hCcEEEEeCCCccCC----------CCc------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHH
Q 014746 272 EADGIILARGNLGVD----------LPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVA 334 (419)
Q Consensus 272 ~sDgImIargDLg~e----------lg~------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~ 334 (419)
.+|+++||+.||+.. ++. +.+..+.++++++|+++|||+.+ .+|- ..| ..+.
T Consensus 444 ~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a------~~p-----~~~~ 512 (565)
T TIGR01417 444 EVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA------GDE-----RAIP 512 (565)
T ss_pred hCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC------CCH-----HHHH
Confidence 999999999999883 442 56777789999999999999987 4422 122 3456
Q ss_pred HHHHcCCceEEec
Q 014746 335 NAVLDGSDAILLG 347 (419)
Q Consensus 335 nav~~G~D~vmLs 347 (419)
.++..|.+.+..+
T Consensus 513 ~l~~~G~~~lsv~ 525 (565)
T TIGR01417 513 LLLGLGLRELSMS 525 (565)
T ss_pred HHHHCCCCEEEEC
Confidence 7788999998776
No 29
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=99.10 E-value=2.1e-09 Score=115.67 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=106.5
Q ss_pred CCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhc-------C--CCCCceEEEEecCHHhHhhHHHHHh
Q 014746 201 LPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQL-------G--DLGQTQIFAKIENTEGLTHFDEILH 271 (419)
Q Consensus 201 lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~-------~--~~~~~~IiaKIEt~~gv~nl~eI~~ 271 (419)
-|.+-....+.|. .+.+.|...|++|||.|+++++++++.+.+. + .+.++.+.+|||||.|+.|+++|++
T Consensus 366 ~~~~f~~QlrAil-ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~ 444 (575)
T PRK11177 366 RKEILHDQLRAIL-RASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAK 444 (575)
T ss_pred CHHHHHHHHHHHH-HHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHh
Confidence 3444455666675 6688999999999999999999999887531 1 1256899999999999999999999
Q ss_pred hCcEEEEeCCCccCCC-----C-----------chhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHH
Q 014746 272 EADGIILARGNLGVDL-----P-----------PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVA 334 (419)
Q Consensus 272 ~sDgImIargDLg~el-----g-----------~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~ 334 (419)
..|+++||++||+..+ + .+.+..+.++++++|+++|||+.+ .+|- .+ |.. +.
T Consensus 445 ~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A----~d--p~~-----~~ 513 (575)
T PRK11177 445 EVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELA----GD--ERA-----TL 513 (575)
T ss_pred hCCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC----CC--HHH-----HH
Confidence 9999999999999833 2 156777779999999999999998 7733 33 322 35
Q ss_pred HHHHcCCceEEec
Q 014746 335 NAVLDGSDAILLG 347 (419)
Q Consensus 335 nav~~G~D~vmLs 347 (419)
-.+..|.|-+=.|
T Consensus 514 lLlglGi~~lSm~ 526 (575)
T PRK11177 514 LLLGMGLDEFSMS 526 (575)
T ss_pred HHHHCCCCeEEEC
Confidence 6678899886665
No 30
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1.4e-09 Score=107.03 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=123.4
Q ss_pred CccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCce-EEEEecCHHhHhhHHHHHhhC---cEEEEeC
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQ-IFAKIENTEGLTHFDEILHEA---DGIILAR 280 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~-IiaKIEt~~gv~nl~eI~~~s---DgImIar 280 (419)
|++..+||. ..+..++|+|.+|+|+++.|+..+...+.+.....++. +++.|||++|+.|..+|+..+ .|+.+|.
T Consensus 66 t~~g~~Dl~-av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga 144 (283)
T COG2301 66 TPWGADDLA-AVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGA 144 (283)
T ss_pred ChhhHHHHH-HHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecH
Confidence 557888996 77899999999999999999999999998665222333 999999999999999999987 7999999
Q ss_pred CCccCCCCch-------hHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEecccc---
Q 014746 281 GNLGVDLPPE-------KVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET--- 350 (419)
Q Consensus 281 gDLg~elg~e-------~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ET--- 350 (419)
.||..++|.. .+..+..+|+.+|+++|++.+.+= -+=+++|.--+ .+..++...|.|+-++-.=.
T Consensus 145 ~Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~V--~~d~~d~~g~~---~e~~~a~~~Gf~GK~~IHP~QI~ 219 (283)
T COG2301 145 NDLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDGV--YTDINDPEGFA---REAAQAAALGFDGKTCIHPSQIE 219 (283)
T ss_pred HHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCccccc--ccccCCHHHHH---HHHHHHHHcCCCcccccChhHHH
Confidence 9999999872 566788999999999999997510 01122332222 55667788899887763100
Q ss_pred ---cCCCCHHHHHHHHHHHHHHHhc
Q 014746 351 ---LRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 351 ---a~G~yP~eaV~~~~~I~~~aE~ 372 (419)
..-..+-+-|.+-++|+..++.
T Consensus 220 ~vn~af~Ps~~ev~~Ar~Il~a~~~ 244 (283)
T COG2301 220 VVNRAFSPSEEEVAWARRVLEAAAA 244 (283)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 0223345678888888888885
No 31
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.79 E-value=1.1e-07 Score=100.46 Aligned_cols=248 Identities=18% Similarity=0.216 Sum_probs=151.0
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEE
Q 014746 20 PSKPTFFPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELL 99 (419)
Q Consensus 20 ~~~~~~~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR 99 (419)
|.+|..+.|++-| | ||. +..++.+.+.+|++++=+.|--+..-.|+.+++--....+..... +|-..|+
T Consensus 59 ~~p~~l~~RRvei--t-gP~--d~km~inAlnsgad~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~----i~~~~~~-- 127 (511)
T TIGR01344 59 PIPPDLQDRRVEI--T-GPV--DRKMVINALNAGAKVFMADFEDSSSPTWENVIYGQINLRDAIRGQ----IDFTDPT-- 127 (511)
T ss_pred CCChhhcCCeeEE--e-CCC--CHHHHHHHhcCCCCEEEeCcccCCCCCchhHHHHHHHHHHHHhCc----CCCcCCC--
Confidence 6666557788776 4 897 689999999999999999999999777776654333332222111 1111110
Q ss_pred EeecCCCcEEeeCCCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEE
Q 014746 100 VVTKTEHPISLLADESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQI 179 (419)
Q Consensus 100 ~~~~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v 179 (419)
.++.+.|+.+-.+.+..-. -+..+++ .|.+| |.
T Consensus 128 ----~gk~y~l~~~~~~liVRpr-------G~hl~e~----------hv~~d-----g~--------------------- 160 (511)
T TIGR01344 128 ----SGKEYALNARLAVLIVRPR-------GWHLPER----------HLTID-----GE--------------------- 160 (511)
T ss_pred ----CCceeecCCCceEEEEecC-------CCCCCcc----------hhccC-----CC---------------------
Confidence 0122333222222221110 0111111 11112 21
Q ss_pred EeCcEEecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhc----CCC-CCceEE
Q 014746 180 KNSAILARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQL----GDL-GQTQIF 254 (419)
Q Consensus 180 ~~gG~l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~----~~~-~~~~Ii 254 (419)
. +|+.-+++-...-.|.+.+. ....|+ +|.+|++++++|++.+.+.+... +.. ..++++
T Consensus 161 ----~---------~~~~l~Dfgl~~~hd~~~l~--~~g~Gp-~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~ 224 (511)
T TIGR01344 161 ----A---------IPGSLFDFGLYFFHNARALL--KKGKGP-YFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKAT 224 (511)
T ss_pred ----c---------CchHHHHHHHHHHhhHHHHH--hCCCCC-EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEE
Confidence 1 13444454434445554442 122364 99999999999999999888643 221 357899
Q ss_pred EEecCHHhHhhHHHHHhhC----cEEEEeCCCccCCCC----c----------------hhHHHHHHHHHHHHHHcCCcE
Q 014746 255 AKIENTEGLTHFDEILHEA----DGIILARGNLGVDLP----P----------------EKVFLFQKAALYKCNMAGKPA 310 (419)
Q Consensus 255 aKIEt~~gv~nl~eI~~~s----DgImIargDLg~elg----~----------------e~v~~~qk~Ii~a~~~~gkpv 310 (419)
++|||+.|+-|++||+.++ .|+..||.|+..++. . +-+...++.++.+|+++|+.+
T Consensus 225 vlIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~A 304 (511)
T TIGR01344 225 VLIETLPAAFEMDEILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHA 304 (511)
T ss_pred EEecCHHHHHhHHHHHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999863 699999999995444 1 233444678889999999999
Q ss_pred EEEccccccccCCCcch--------hh---HhHHHHHHHcCCceEEec
Q 014746 311 VVTRVVDSMTDNLRPTR--------AE---ATDVANAVLDGSDAILLG 347 (419)
Q Consensus 311 i~TqmLeSM~~~~~Ptr--------aE---v~Dv~nav~~G~D~vmLs 347 (419)
|. . |-- -.|.+ |- ..|-.....+|.|+-++-
T Consensus 305 Id-G----m~a-~ip~k~D~~~n~~al~~vr~dk~re~~lGfDGkwvi 346 (511)
T TIGR01344 305 MG-G----MAA-FIPIKGDPAANEAAMNKVRADKIREAKNGHDGTWVA 346 (511)
T ss_pred cC-c----hhc-cCCcccChhhHHHHHHHHHHHHHHHHhCCCCccccC
Confidence 85 1 100 01222 11 355667788899887774
No 32
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.75 E-value=1.5e-07 Score=99.52 Aligned_cols=245 Identities=17% Similarity=0.215 Sum_probs=150.8
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEE
Q 014746 20 PSKPTFFPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELL 99 (419)
Q Consensus 20 ~~~~~~~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR 99 (419)
|.+|..+.|++-| | ||.. ..++.+.+.+|++++=+.|--+..-.|+..++--....+.....+.. -+-.|
T Consensus 59 ~~p~~l~~RRvei--t-gP~~--~km~~nAlnsgAd~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~i~~-~~~~g---- 128 (511)
T cd00727 59 PVPPDLQDRRVEI--T-GPVD--RKMVINALNSGAKVFMADFEDANAPTWENQVEGQINLRDAVRGTISF-TSPEG---- 128 (511)
T ss_pred CCChhhcCceeEE--e-CCCC--HHHHHHHhcCCCCEEEeCcccCCCCChHHHHHHHHHHHHHhcCCCCc-cCCCC----
Confidence 6666557777765 3 8975 88999999999999999999999888887755433333322211100 01112
Q ss_pred EeecCCCcEEeeCCCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEE
Q 014746 100 VVTKTEHPISLLADESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQI 179 (419)
Q Consensus 100 ~~~~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v 179 (419)
+.+.|+++..+.+..-.. +..++. .|++| |+
T Consensus 129 ------k~y~l~~~~~~l~VRprG-------~hl~e~----------hv~~d-----g~--------------------- 159 (511)
T cd00727 129 ------KEYKLNDTPATLIVRPRG-------WHLPEK----------HVLVD-----GE--------------------- 159 (511)
T ss_pred ------ceeeeCCCCcEEEEecCC-------CCCCcc----------hhhcC-----Cc---------------------
Confidence 223332222222221110 111111 11112 21
Q ss_pred EeCcEEecCCcceeecCceecCCCCCccCHHHHHHHhhhc--CCcEEEEecCCCHHHHHHHHHHHHhc----CCC-CCce
Q 014746 180 KNSAILARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARN--NIDFLSLSHTRGAEDVRHARDFLSQL----GDL-GQTQ 252 (419)
Q Consensus 180 ~~gG~l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~--g~d~I~lsfV~saedv~~v~~~l~~~----~~~-~~~~ 252 (419)
. +|+.-+++-.+-=.|...+ ++. |+ ||.+|++++++|++.+.+.+... |.. ..++
T Consensus 160 ----~---------~~~~l~Dfgl~~fhd~~~l----~~~g~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIk 221 (511)
T cd00727 160 ----P---------VSGSLFDFGLYFFHNAKAL----LARGSGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIK 221 (511)
T ss_pred ----c---------CcchhhhHHHHHHhhHHHH----HhcCCCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Confidence 1 1334344322222343333 343 58 99999999999999999988643 221 4588
Q ss_pred EEEEecCHHhHhhHHHHHhhC----cEEEEeCCCccCCCCc-----------h--------hHHH-HHHHHHHHHHHcCC
Q 014746 253 IFAKIENTEGLTHFDEILHEA----DGIILARGNLGVDLPP-----------E--------KVFL-FQKAALYKCNMAGK 308 (419)
Q Consensus 253 IiaKIEt~~gv~nl~eI~~~s----DgImIargDLg~elg~-----------e--------~v~~-~qk~Ii~a~~~~gk 308 (419)
++++|||+.|+-|++||+.++ .|+..||.|+..+++. + .+.. .++.++.+|+++|+
T Consensus 222 i~vLIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~ 301 (511)
T cd00727 222 ATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGA 301 (511)
T ss_pred EEEEecCHHHHHHHHHHHHhccCceEEEEcChHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999874 5999999999998821 1 2333 35679999999999
Q ss_pred cEEEEccccccccCCCcch-hh----------HhHHHHHHHcCCceEEec
Q 014746 309 PAVVTRVVDSMTDNLRPTR-AE----------ATDVANAVLDGSDAILLG 347 (419)
Q Consensus 309 pvi~TqmLeSM~~~~~Ptr-aE----------v~Dv~nav~~G~D~vmLs 347 (419)
.+|. . |-- -.|.+ .+ ..|-.....+|.|+-++-
T Consensus 302 ~AId-G----m~a-~ip~kdd~~~n~~~l~~~r~dk~~~~~lGfDGkwvi 345 (511)
T cd00727 302 HAMG-G----MAA-QIPIKDDPAANEAALAKVRADKLREATAGHDGTWVA 345 (511)
T ss_pred Cccc-c----hhh-cCCcccchhhHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 9875 1 111 12222 11 356667888899987774
No 33
>PRK09255 malate synthase; Validated
Probab=98.67 E-value=7e-07 Score=94.83 Aligned_cols=246 Identities=16% Similarity=0.203 Sum_probs=149.7
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeEE
Q 014746 20 PSKPTFFPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPELL 99 (419)
Q Consensus 20 ~~~~~~~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkIR 99 (419)
|.+|..+.|+.-| | ||.+ ..++.+.+.+|++++=+.|--+..-.|+.+++--....+.....+.. -+-.|
T Consensus 80 ~~p~~l~~RRvei--t-gP~~--~km~~nAlnsgad~~m~D~EDa~aP~wkn~i~gq~nl~~al~~~i~~-~~~~G---- 149 (531)
T PRK09255 80 PIPADLQDRRVEI--T-GPVD--RKMVINALNSGAKVFMADFEDSNAPTWDNVIDGQINLRDAVRGTISY-TNEAG---- 149 (531)
T ss_pred CCChhhcCCeeEE--e-CCCC--HHHHHHHhcCCCCEEEeccccCCCCCchHHHHHHHHHHHHHcCCCCc-cCCCC----
Confidence 6666667787775 3 8976 78999999999999999999999777777654433332222211110 00001
Q ss_pred EeecCCCcEEeeC-CCEEEEeeCCCCCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEE
Q 014746 100 VVTKTEHPISLLA-DESVVLTPDQDKEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQ 178 (419)
Q Consensus 100 ~~~~~~~~i~l~~-G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~ 178 (419)
+.+.|+. ...+.+.... +..+++ .|++| |+-
T Consensus 150 ------k~y~l~~~~~~l~VRprG--------~hl~e~----------hv~vd-----G~~------------------- 181 (531)
T PRK09255 150 ------KEYRLNPKPAVLIVRPRG--------WHLPEK----------HVTVD-----GEP------------------- 181 (531)
T ss_pred ------CeeecCCCCceEEEecCC--------CCCCcc----------hhhcC-----Ccc-------------------
Confidence 1222211 1111111110 111111 11122 311
Q ss_pred EEeCcEEecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhc----CCC-CCceE
Q 014746 179 IKNSAILARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQL----GDL-GQTQI 253 (419)
Q Consensus 179 v~~gG~l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~----~~~-~~~~I 253 (419)
+|+.-+++-...=.|.+.+. - ...|+ +|.+|++++++|++.+.+.+... |.. ..+++
T Consensus 182 ---------------v~~~l~Dfgl~~fhd~~~l~-~-~g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki 243 (531)
T PRK09255 182 ---------------ISGSLFDFALYFFHNAKELL-A-KGSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKA 243 (531)
T ss_pred ---------------cchhHHHHHHHHHhhHHHHH-h-CCCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 13333343222334444443 2 25677 99999999999999999988643 221 45889
Q ss_pred EEEecCHHhHhhHHHHHhhC----cEEEEeCCCccCCC----Cc----------------hhHHHHHHHHHHHHHHcCCc
Q 014746 254 FAKIENTEGLTHFDEILHEA----DGIILARGNLGVDL----PP----------------EKVFLFQKAALYKCNMAGKP 309 (419)
Q Consensus 254 iaKIEt~~gv~nl~eI~~~s----DgImIargDLg~el----g~----------------e~v~~~qk~Ii~a~~~~gkp 309 (419)
+++|||+.|+-|++||+.++ .|+..||.|+..++ +. +-+...++.++.+|+++|+.
T Consensus 244 ~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~ 323 (531)
T PRK09255 244 TVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAH 323 (531)
T ss_pred EEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999874 59999999999662 21 22333467788999999999
Q ss_pred EEEEccccccccCCCcch-----------hhHhHHHHHHHcCCceEEec
Q 014746 310 AVVTRVVDSMTDNLRPTR-----------AEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 310 vi~TqmLeSM~~~~~Ptr-----------aEv~Dv~nav~~G~D~vmLs 347 (419)
+|. . |- .-.|.+ .=..|-.....+|.|+-++-
T Consensus 324 AId-G----m~-a~ip~k~D~~~n~~a~~g~r~dk~r~~~lGfDGkwvi 366 (531)
T PRK09255 324 AMG-G----MA-AFIPIKNDPEANEAALAKVRADKEREANDGHDGTWVA 366 (531)
T ss_pred ccC-c----hh-hcCCcccChhhhHHHHHHHHHHHHHHHhCCCCcceec
Confidence 875 1 11 112322 11255667888899998875
No 34
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.60 E-value=2.3e-06 Score=91.08 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=92.1
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhcC----CC-CCceEEEEecCHHhHhhHHHHHhhC----cEEEEeCCCccCCCCch
Q 014746 220 NIDFLSLSHTRGAEDVRHARDFLSQLG----DL-GQTQIFAKIENTEGLTHFDEILHEA----DGIILARGNLGVDLPPE 290 (419)
Q Consensus 220 g~d~I~lsfV~saedv~~v~~~l~~~~----~~-~~~~IiaKIEt~~gv~nl~eI~~~s----DgImIargDLg~elg~e 290 (419)
+-=||.+|++++++|++.+.+.+...+ .. ..+++++.|||+.|+.|++||+.+. .|+..|+.|+..+++..
T Consensus 184 ~gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~ 263 (511)
T cd00480 184 SGPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKT 263 (511)
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccc
Confidence 345899999999999999998886432 11 3578999999999999999999873 49999999999998531
Q ss_pred -------------------h-HHHHHHHHHHHHHHcCCcEEE---Eccc-cccccCCCcch-hhHhHHHHHHHcCCceEE
Q 014746 291 -------------------K-VFLFQKAALYKCNMAGKPAVV---TRVV-DSMTDNLRPTR-AEATDVANAVLDGSDAIL 345 (419)
Q Consensus 291 -------------------~-v~~~qk~Ii~a~~~~gkpvi~---TqmL-eSM~~~~~Ptr-aEv~Dv~nav~~G~D~vm 345 (419)
. +...+++++.+|+++|.++|. .++- ..|-..+...- .=..|...+...|.|+-+
T Consensus 264 ~~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkw 343 (511)
T cd00480 264 FRNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTW 343 (511)
T ss_pred cccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCccc
Confidence 1 445567899999999999864 2321 01111111011 112566688889999877
Q ss_pred ec
Q 014746 346 LG 347 (419)
Q Consensus 346 Ls 347 (419)
.-
T Consensus 344 vi 345 (511)
T cd00480 344 VA 345 (511)
T ss_pred cc
Confidence 64
No 35
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.41 E-value=3e-06 Score=84.40 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=96.1
Q ss_pred CCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhc-------C--CCCCceEEEEecCHHhHhhHHHHHhh
Q 014746 202 PTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQL-------G--DLGQTQIFAKIENTEGLTHFDEILHE 272 (419)
Q Consensus 202 p~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~-------~--~~~~~~IiaKIEt~~gv~nl~eI~~~ 272 (419)
|.+-....+.|. .+...|-=.|++|||++.+++.++++++.+. + ....+.+-++||+|.++-.++++++.
T Consensus 119 p~~f~~QlrAil-ra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~ 197 (293)
T PF02896_consen 119 PELFRTQLRAIL-RAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKE 197 (293)
T ss_dssp HHHHHHHHHHHH-HHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTT
T ss_pred hhhHHHHHHHHH-HHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHH
Confidence 444445566665 4455665679999999999999999988654 1 23568999999999999999999999
Q ss_pred CcEEEEeCCCccCCC-C---------------chhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHH
Q 014746 273 ADGIILARGNLGVDL-P---------------PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN 335 (419)
Q Consensus 273 sDgImIargDLg~el-g---------------~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~n 335 (419)
+|.+-||-.||..=+ + .+.+....++++.+|+++||||.+ .+|- . .| .-+.-
T Consensus 198 ~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a----~--~p-----~~~~~ 266 (293)
T PF02896_consen 198 VDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMA----S--DP-----EAIPL 266 (293)
T ss_dssp SSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGG----G--SH-----HHHHH
T ss_pred CCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCC----C--CH-----HHHHH
Confidence 999999988873210 1 145667779999999999999998 7744 2 22 23456
Q ss_pred HHHcCCceEEec
Q 014746 336 AVLDGSDAILLG 347 (419)
Q Consensus 336 av~~G~D~vmLs 347 (419)
.+..|.|.+-.+
T Consensus 267 Ll~lGi~~lSv~ 278 (293)
T PF02896_consen 267 LLGLGIRSLSVS 278 (293)
T ss_dssp HHHHT-SEEEE-
T ss_pred HHHcCCCEEEEC
Confidence 788899998887
No 36
>PLN02626 malate synthase
Probab=97.95 E-value=3.8e-05 Score=81.53 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=91.7
Q ss_pred cEEEEecCCCHHHHHHHHHHHHhc----CC-CCCceEEEEecCHHhHhhHHHHHhhC----cEEEEeCCCc----cCCCC
Q 014746 222 DFLSLSHTRGAEDVRHARDFLSQL----GD-LGQTQIFAKIENTEGLTHFDEILHEA----DGIILARGNL----GVDLP 288 (419)
Q Consensus 222 d~I~lsfV~saedv~~v~~~l~~~----~~-~~~~~IiaKIEt~~gv~nl~eI~~~s----DgImIargDL----g~elg 288 (419)
-||.+|+++++++++...+.+... |. ...+++++.|||..|+-|++||+.++ -|+..||-|+ ...++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 589999999999999999988633 21 24689999999999999999999875 5999999999 33332
Q ss_pred c---------hh----HHHHHH---HHHHHHHHcCCcEEEEcccccc--ccCCCcchhhH----hHHHHHHHcCCceEEe
Q 014746 289 P---------EK----VFLFQK---AALYKCNMAGKPAVVTRVVDSM--TDNLRPTRAEA----TDVANAVLDGSDAILL 346 (419)
Q Consensus 289 ~---------e~----v~~~qk---~Ii~a~~~~gkpvi~TqmLeSM--~~~~~PtraEv----~Dv~nav~~G~D~vmL 346 (419)
. .. .+.++. .++.+|+++|...|- .|---+ .+.|.++.+.. .|-.....+|.|+-+.
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIg-GM~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~wV 371 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMG-GMAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTWA 371 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCcccc-cccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCceee
Confidence 1 12 555554 899999999999875 222112 22344433322 5666888999999888
Q ss_pred c
Q 014746 347 G 347 (419)
Q Consensus 347 s 347 (419)
-
T Consensus 372 i 372 (551)
T PLN02626 372 A 372 (551)
T ss_pred c
Confidence 5
No 37
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=97.68 E-value=9.6e-05 Score=63.52 Aligned_cols=41 Identities=27% Similarity=0.615 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHHCCCCCCCCEEEEEeec-----CCccEEEEEE
Q 014746 376 TSESALKVALDYGKAHGVIKSHDRVVICQKV-----GDSAVVKIME 416 (419)
Q Consensus 376 ~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~-----g~tn~~~i~~ 416 (419)
+.+++++.++++++++|++++||.||+++|+ |.||++||++
T Consensus 72 ~~~~~~~~a~~~~~~~g~~~~gd~vVv~~g~~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 72 DTEELIAEALEYAKERGLLKPGDKVVVVAGMPFGTPGGTNTIRVVR 117 (117)
T ss_dssp SHHHHHHHHHHHHHHTTSS-TTSEEEEEEESSTTTTSSEEEEEEEE
T ss_pred cHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEC
Confidence 6899999999999999999999999999995 8999999984
No 38
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.48 E-value=0.00043 Score=77.34 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=90.9
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhc--------CC-CCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCC-C
Q 014746 219 NNIDFLSLSHTRGAEDVRHARDFLSQL--------GD-LGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDL-P 288 (419)
Q Consensus 219 ~g~d~I~lsfV~saedv~~v~~~l~~~--------~~-~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~el-g 288 (419)
.|-=.|++|||.+.+++.++++.+.+. +. ...+.+-+|||+|.++--++++++.+|.+-||-.||.-=+ .
T Consensus 549 ~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGtNDL~Qy~la 628 (748)
T PRK11061 549 TGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLA 628 (748)
T ss_pred CCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHHH
Confidence 455679999999999999999988631 21 1236799999999999999999999999999999985321 1
Q ss_pred ---------------chhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 289 ---------------PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 289 ---------------~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.+.+..+.++++.+|+++||||.+ .+|- .+ |... .-.+..|.+.+=.+
T Consensus 629 ~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a----~d--p~~~-----~~L~glGi~~lS~~ 692 (748)
T PRK11061 629 VDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMA----GD--PMGA-----LLLIGLGYRHLSMN 692 (748)
T ss_pred hcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCcc----cC--HHHH-----HHHHHCCCcEEccC
Confidence 145666778999999999999998 7743 33 3332 46677898885444
No 39
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=97.22 E-value=0.0026 Score=72.05 Aligned_cols=136 Identities=15% Similarity=0.080 Sum_probs=97.4
Q ss_pred CCCCCccCHHHHHHHhhh---cCC---cEEEEecCCCHHHHHHHHHHHHhc--------CCCCCceEEEEecCHHhHhhH
Q 014746 201 LPTLTDKDKEVISTWGAR---NNI---DFLSLSHTRGAEDVRHARDFLSQL--------GDLGQTQIFAKIENTEGLTHF 266 (419)
Q Consensus 201 lp~lte~D~~di~~~~l~---~g~---d~I~lsfV~saedv~~v~~~l~~~--------~~~~~~~IiaKIEt~~gv~nl 266 (419)
-|.+-+-..+.|..++.. .|. =-|++|||.+.++++.+++.+.+. |...++.|-++||+|.|.-.+
T Consensus 669 ~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~a 748 (856)
T TIGR01828 669 YPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTA 748 (856)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHH
Confidence 344445555566433333 253 269999999999999999887632 211247899999999999999
Q ss_pred HHHHhhCcEEEEeCCCccCCC-Cc----------------------------hhHHHHHHHHHHHHHH--cCCcEEE-Ec
Q 014746 267 DEILHEADGIILARGNLGVDL-PP----------------------------EKVFLFQKAALYKCNM--AGKPAVV-TR 314 (419)
Q Consensus 267 ~eI~~~sDgImIargDLg~el-g~----------------------------e~v~~~qk~Ii~a~~~--~gkpvi~-Tq 314 (419)
++|++.+|.+-||-.||..-+ ++ +.+..+.++++.+|++ +|+|+.+ .+
T Consensus 749 d~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE 828 (856)
T TIGR01828 749 DKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGE 828 (856)
T ss_pred HHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCC
Confidence 999999999999988875321 21 2355566889999998 8999998 76
Q ss_pred cccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 315 VVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 315 mLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+- ..|.- +...+..|.|.+-.|
T Consensus 829 ~a------~dp~~-----i~~l~~~Gi~~~S~s 850 (856)
T TIGR01828 829 HG------GDPSS-----IEFCHKIGLNYVSCS 850 (856)
T ss_pred Cc------CCHHH-----HHHHHHCCCCEEEEC
Confidence 32 23332 356677799988776
No 40
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.98 E-value=0.0036 Score=66.47 Aligned_cols=110 Identities=16% Similarity=0.125 Sum_probs=86.6
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhcCC---------------------CCCceEEEEecCHHhHhhHHHHHhh---C--
Q 014746 220 NIDFLSLSHTRGAEDVRHARDFLSQLGD---------------------LGQTQIFAKIENTEGLTHFDEILHE---A-- 273 (419)
Q Consensus 220 g~d~I~lsfV~saedv~~v~~~l~~~~~---------------------~~~~~IiaKIEt~~gv~nl~eI~~~---s-- 273 (419)
.+-.|++||.++++|+.++..+..+.+. ...+.||..+||..++.|.++|+.. .
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 5567999999999999999998877641 1245799999999999999999986 1
Q ss_pred ---cEEEEeCCCccCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCC-cchhh
Q 014746 274 ---DGIILARGNLGVDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLR-PTRAE 329 (419)
Q Consensus 274 ---DgImIargDLg~elg~----e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~-PtraE 329 (419)
--||+||-|=+.+.|+ ..+..+|+++.+.|+++|+++.. -.+=.+-=.... |...+
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pfhGrGgspfRGGg~P~n~a 266 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPIIGAGSLPFRGHLSPENIE 266 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeecCCCCcCCCCChhhHH
Confidence 2789999999999997 57889999999999999999865 332222223333 65554
No 41
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.0043 Score=66.46 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=95.9
Q ss_pred cCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHh-------cCC--CCCceEEEEecCHHhHhhHHHHHhhCcEEE
Q 014746 207 KDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQ-------LGD--LGQTQIFAKIENTEGLTHFDEILHEADGII 277 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~-------~~~--~~~~~IiaKIEt~~gv~nl~eI~~~sDgIm 277 (419)
...+.|. .|-..|-=.|++|+|-+.++++.+++.+.+ .+. .+++.+=.|||+|.|.-.++.+++.+|-+=
T Consensus 373 tQLRAil-RAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFfS 451 (574)
T COG1080 373 TQLRAIL-RASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFFS 451 (574)
T ss_pred HHHHHHH-HhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhCCEee
Confidence 3444454 456678888999999999999999988852 221 236788899999999999999999999999
Q ss_pred EeCCCccC-----CCCc-----------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcC
Q 014746 278 LARGNLGV-----DLPP-----------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDG 340 (419)
Q Consensus 278 IargDLg~-----elg~-----------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G 340 (419)
||-.||.- +=+- +.+..+.++++.+++++||||++ .+|- - .|+- +--.+..|
T Consensus 452 IGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGElA----g--D~~a-----~plLlGlG 520 (574)
T COG1080 452 IGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGELA----G--DPAA-----TPLLLGLG 520 (574)
T ss_pred ecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhhc----c--Chhh-----HHHHHhcC
Confidence 99999752 2111 46777779999999999999998 6532 2 2221 23456778
Q ss_pred CceEEec
Q 014746 341 SDAILLG 347 (419)
Q Consensus 341 ~D~vmLs 347 (419)
.|-+-.|
T Consensus 521 ldElSms 527 (574)
T COG1080 521 LDELSMS 527 (574)
T ss_pred cchhccC
Confidence 7765444
No 42
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=96.88 E-value=0.0062 Score=69.03 Aligned_cols=143 Identities=14% Similarity=0.104 Sum_probs=101.7
Q ss_pred ecCcee--cCCCCCccCHHHHHHHhhh---cCCc---EEEEecCCCHHHHHHHHHHHH--------hcCCCCCceEEEEe
Q 014746 194 VSQIRI--DLPTLTDKDKEVISTWGAR---NNID---FLSLSHTRGAEDVRHARDFLS--------QLGDLGQTQIFAKI 257 (419)
Q Consensus 194 lp~~~~--~lp~lte~D~~di~~~~l~---~g~d---~I~lsfV~saedv~~v~~~l~--------~~~~~~~~~IiaKI 257 (419)
+.|..+ ..|.+.+-..+.|..++.+ .|.+ -|++|+|.+.++++.+++.+. +.|...+..|-.+|
T Consensus 666 ~RG~Rl~l~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MI 745 (879)
T PRK09279 666 HRGCRLGITYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMI 745 (879)
T ss_pred cchhhcccCChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEE
Confidence 344443 3455556666666544443 3532 499999999999999998763 22322357899999
Q ss_pred cCHHhHhhHHHHHhhCcEEEEeCCCccCC-CCc----------------------------hhHHHHHHHHHHHHHH--c
Q 014746 258 ENTEGLTHFDEILHEADGIILARGNLGVD-LPP----------------------------EKVFLFQKAALYKCNM--A 306 (419)
Q Consensus 258 Et~~gv~nl~eI~~~sDgImIargDLg~e-lg~----------------------------e~v~~~qk~Ii~a~~~--~ 306 (419)
|+|.|.--+++|++.+|.+-||-.||..- +|+ +.+..+.+..+.+|++ .
T Consensus 746 EvP~Aal~ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~ 825 (879)
T PRK09279 746 ELPRAALTADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRP 825 (879)
T ss_pred ehHHHHHhHHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999987532 122 2355556788889998 7
Q ss_pred CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 307 GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 307 gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
|+|+.+ .++ ...|. -+.-+...|.|-+-.|
T Consensus 826 ~~~vgICGE~------ggdp~-----~i~~l~~lGld~vS~s 856 (879)
T PRK09279 826 DLKLGICGEH------GGDPA-----SIEFCHKVGLDYVSCS 856 (879)
T ss_pred CCEEEECCCC------ccCHH-----HHHHHHHCCCCEEEEC
Confidence 999998 663 22343 3456777899998777
No 43
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.87 E-value=0.016 Score=59.75 Aligned_cols=116 Identities=14% Similarity=0.162 Sum_probs=73.0
Q ss_pred HHhhhcCCcEEEEec-------CCCHHHHHHHHHHHHhcCCCCCceEEE-EecCHHhHhhHHHHHhhCcEEEEeCCCccC
Q 014746 214 TWGARNNIDFLSLSH-------TRGAEDVRHARDFLSQLGDLGQTQIFA-KIENTEGLTHFDEILHEADGIILARGNLGV 285 (419)
Q Consensus 214 ~~~l~~g~d~I~lsf-------V~saedv~~v~~~l~~~~~~~~~~Iia-KIEt~~gv~nl~eI~~~sDgImIargDLg~ 285 (419)
+.+.+.|+|+|.+.. ..+..+...+.+++++. ++.||+ .|=|++....+.+ .-+|+||+|+|-=+.
T Consensus 148 ~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~----~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~Gs~ 221 (368)
T PRK08649 148 PTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL----DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGPGAA 221 (368)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC----CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCcC
Confidence 466899999999853 22222445556666553 367887 8999888776665 458999999885211
Q ss_pred CCCc--h--hHHHHH--HHHHHHHHHc-------CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 286 DLPP--E--KVFLFQ--KAALYKCNMA-------GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 286 elg~--e--~v~~~q--k~Ii~a~~~~-------gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.... . .+|.+. .....+++++ ++|+|. ..+- .-.|++.|+..|+|++|+.
T Consensus 222 ~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~------------~~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 222 CTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIG------------TSGDIAKAIACGADAVMLG 285 (368)
T ss_pred CCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC------------CHHHHHHHHHcCCCeeccc
Confidence 1110 0 122221 2222233332 689998 5532 3479999999999999984
No 44
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=96.17 E-value=0.052 Score=58.40 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=112.2
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhcC---------CCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCcc-----
Q 014746 219 NNIDFLSLSHTRGAEDVRHARDFLSQLG---------DLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLG----- 284 (419)
Q Consensus 219 ~g~d~I~lsfV~saedv~~v~~~l~~~~---------~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg----- 284 (419)
.|-=-|++|+|.+.+++++.++++.+.. ....+.|=+++|-|..+-.+++++...|-|-+|-.||.
T Consensus 557 ~g~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllA 636 (756)
T COG3605 557 TGNLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLA 636 (756)
T ss_pred CcCceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHH
Confidence 3344699999999999999999886431 12346788999999999999999999999999999974
Q ss_pred CCCCc-----------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccC
Q 014746 285 VDLPP-----------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLR 352 (419)
Q Consensus 285 ~elg~-----------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~ 352 (419)
++=+- +.+..+-|+|+.+|..+|+||-+ .+|- ..|--| .-.+..|.+.+-.| -|++
T Consensus 637 vDR~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA------g~Pl~A-----~~LigLGfrslSMn-~~~v 704 (756)
T COG3605 637 VDRNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA------GDPLSA-----MALIGLGFRSLSMN-PRSV 704 (756)
T ss_pred HhcCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhc------CChHHH-----HHHHhcCcCccccC-cccc
Confidence 33232 34556679999999999999988 6643 355444 55677899987776 4566
Q ss_pred CCCHHHHHHHHHHHHHHHhc--------CCcChHHHHHHHHHHHHHCCC
Q 014746 353 GLYPVETISIVGKICAEAKT--------TNATSESALKVALDYGKAHGV 393 (419)
Q Consensus 353 G~yP~eaV~~~~~I~~~aE~--------~~~~~~~~~~~a~~~~~~~~~ 393 (419)
|+ ||+|-.=+..++. ......+.-+.-..++..+|+
T Consensus 705 ~~-----VK~ml~~ld~~~~~~l~~~~L~~~~~~~ir~~l~~f~~~~gi 748 (756)
T COG3605 705 GP-----VKYLLRHLDLAEARALAERALTAQSGTSIRHLLAAFAERRGI 748 (756)
T ss_pred cc-----HHHHHHhccHHHHHHHHHHHhhcCCchhHHHHHHHHHHhcCC
Confidence 64 5666554443332 113444444555555666654
No 45
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=96.14 E-value=0.023 Score=60.42 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=81.8
Q ss_pred hcCCcEEEEecCCCHHHHHHHHHHHHhcC--C----------CCCceEEEEecCHHhHhhHHHHHhhC----------cE
Q 014746 218 RNNIDFLSLSHTRGAEDVRHARDFLSQLG--D----------LGQTQIFAKIENTEGLTHFDEILHEA----------DG 275 (419)
Q Consensus 218 ~~g~d~I~lsfV~saedv~~v~~~l~~~~--~----------~~~~~IiaKIEt~~gv~nl~eI~~~s----------Dg 275 (419)
...+-.+++||+++++|+.++..++.+.+ . ...+.|+..+||.+.+.|.++|++.- --
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 45567799999999999999998887665 1 12578999999999999999999751 38
Q ss_pred EEEeCCCccCCCCc----hhHHHHHHHHHHHHHHcCCcEEE
Q 014746 276 IILARGNLGVDLPP----EKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 276 ImIargDLg~elg~----e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
||+|+.|=+.+-|+ ..+..+|.++.+.|+++|+++..
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999998 57889999999999999999865
No 46
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.06 E-value=0.06 Score=55.58 Aligned_cols=121 Identities=19% Similarity=0.314 Sum_probs=70.1
Q ss_pred CHHHHHHHhhhcCCcEEEEe-------cCCCHHHHHHHHHHHHhcCCCCCceEEE-EecCHHhHhhHHHHHhhCcEEEEe
Q 014746 208 DKEVISTWGARNNIDFLSLS-------HTRGAEDVRHARDFLSQLGDLGQTQIFA-KIENTEGLTHFDEILHEADGIILA 279 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~ls-------fV~saedv~~v~~~l~~~~~~~~~~Iia-KIEt~~gv~nl~eI~~~sDgImIa 279 (419)
+...+.+.+.+.|+|.|.+. |+....+-..+.+++.+. +++||+ .|-|.+...++-+ .-+|+||+|
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~----~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G 216 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL----DVPVIAGGVNDYTTALHLMR--TGAAGVIVG 216 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC----CCCEEEeCCCCHHHHHHHHH--cCCCEEEEC
Confidence 33333346689999999975 222222344455555443 367776 7777776655554 358999998
Q ss_pred CCCccCC---CCchhHHH--HHHHHHHHHH----HcC---CcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 280 RGNLGVD---LPPEKVFL--FQKAALYKCN----MAG---KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 280 rgDLg~e---lg~e~v~~--~qk~Ii~a~~----~~g---kpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
||--... +++ .+|. +-..+..+++ +.| +|+|. ..+- + -.|++.|+..|+|++|+
T Consensus 217 ~gg~~~~~~~lg~-~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~---------t---g~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 217 PGGANTTRLVLGI-EVPMATAIADVAAARRDYLDETGGRYVHVIADGGIE---------T---SGDLVKAIACGADAVVL 283 (369)
T ss_pred CCCCcccccccCC-CCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCC---------C---HHHHHHHHHcCCCEeee
Confidence 8642111 110 1221 1122222222 223 89987 5532 2 37899999999999999
Q ss_pred c
Q 014746 347 G 347 (419)
Q Consensus 347 s 347 (419)
.
T Consensus 284 G 284 (369)
T TIGR01304 284 G 284 (369)
T ss_pred H
Confidence 4
No 47
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.85 E-value=0.16 Score=52.04 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=81.2
Q ss_pred cCHHHHHHHhhhcCCcEEEE--ecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCcc
Q 014746 207 KDKEVISTWGARNNIDFLSL--SHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLG 284 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~l--sfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg 284 (419)
.+.+... ..++.|+|+|.+ +...+...+..++++-.... +-..|.-.|-|.++.++|-+ .-+|+|-+|=|==+
T Consensus 108 ~~~er~~-~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~--~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGs 182 (352)
T PF00478_consen 108 DDFERAE-ALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFP--DVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGS 182 (352)
T ss_dssp CHHHHHH-HHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHST--TSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSST
T ss_pred HHHHHHH-HHHHcCCCEEEccccCccHHHHHHHHHHHHHhCC--CceEEecccCCHHHHHHHHH--cCCCEEEEeccCCc
Confidence 4566665 457899999988 68888877777765433332 23445668999999988644 23899999755322
Q ss_pred CCC-------CchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 285 VDL-------PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 285 ~el-------g~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+-+ |.+ ...+-..+..+|+.+++|+|- ..+ ..--|++.|+..|+|+||+.
T Consensus 183 iCtTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~iIADGGi------------~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 183 ICTTREVTGVGVP-QLTAVYECAEAARDYGVPIIADGGI------------RTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp TBHHHHHHSBSCT-HHHHHHHHHHHHHCTTSEEEEESS-------------SSHHHHHHHHHTT-SEEEES
T ss_pred ccccccccccCCc-HHHHHHHHHHHhhhccCceeecCCc------------Ccccceeeeeeecccceeec
Confidence 211 222 334445677888889999997 542 24589999999999999993
No 48
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=95.81 E-value=0.045 Score=62.44 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=87.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhcCCC------CCceEEEEecCHHhHhhHHHHHhh--C--------------cEEE
Q 014746 220 NIDFLSLSHTRGAEDVRHARDFLSQLGDL------GQTQIFAKIENTEGLTHFDEILHE--A--------------DGII 277 (419)
Q Consensus 220 g~d~I~lsfV~saedv~~v~~~l~~~~~~------~~~~IiaKIEt~~gv~nl~eI~~~--s--------------DgIm 277 (419)
.+..+++|+.++++|+.++-.++.+.|.. ..+.|+.-.||.+.++|.++|++. + --||
T Consensus 486 ~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeVM 565 (911)
T PRK00009 486 AIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEVM 565 (911)
T ss_pred hhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEEE
Confidence 56678999999999999999998887631 257899999999999999999986 1 2799
Q ss_pred EeCCCccCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcch
Q 014746 278 LARGNLGVDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTR 327 (419)
Q Consensus 278 IargDLg~elg~----e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~Ptr 327 (419)
+|.-|=+.+-|+ ..+..+|+++...|+++|+++.. -..=-|.-..+-|+-
T Consensus 566 lGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhGrGGsv~RGGgp~~ 620 (911)
T PRK00009 566 LGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHGRGGTVGRGGGPAY 620 (911)
T ss_pred eecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCChHH
Confidence 999999999998 58899999999999999999876 433333334444443
No 49
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.75 E-value=0.21 Score=50.63 Aligned_cols=123 Identities=16% Similarity=0.237 Sum_probs=76.5
Q ss_pred ccCHHHHHHHhhhcCCcEEEEecCC-CHHHHHHHHHHHHhcCCCCCceEEE-EecCHHhHhhHHHHHhhCcEEEEe--CC
Q 014746 206 DKDKEVISTWGARNNIDFLSLSHTR-GAEDVRHARDFLSQLGDLGQTQIFA-KIENTEGLTHFDEILHEADGIILA--RG 281 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d~I~lsfV~-saedv~~v~~~l~~~~~~~~~~Iia-KIEt~~gv~nl~eI~~~sDgImIa--rg 281 (419)
+.+.+.+. ..++.|+|+|.+++-. +.+.+.+..+.+.+.. .++.|++ .+.|++...++.+ .=+|+|.++ +|
T Consensus 93 ~~~~~~~~-~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~--p~v~Vi~G~v~t~~~A~~l~~--aGaD~I~vg~g~G 167 (325)
T cd00381 93 EDDKERAE-ALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKY--PNVDVIAGNVVTAEAARDLID--AGADGVKVGIGPG 167 (325)
T ss_pred hhHHHHHH-HHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHC--CCceEEECCCCCHHHHHHHHh--cCCCEEEECCCCC
Confidence 44566665 6689999999887642 2244445555555544 4567775 7777766655543 237999984 33
Q ss_pred Cc--cCC---CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 282 NL--GVD---LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 282 DL--g~e---lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
-- +.. .+.+.+ .+-..+.++++..++|+|- ..+ . .-.|++.|+..|+|++|+
T Consensus 168 ~~~~t~~~~g~g~p~~-~~i~~v~~~~~~~~vpVIA~GGI---------~---~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 168 SICTTRIVTGVGVPQA-TAVADVAAAARDYGVPVIADGGI---------R---TSGDIVKALAAGADAVML 225 (325)
T ss_pred cCcccceeCCCCCCHH-HHHHHHHHHHhhcCCcEEecCCC---------C---CHHHHHHHHHcCCCEEEe
Confidence 21 110 111222 2334566777788999986 442 2 346889999999999999
No 50
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.27 E-value=0.26 Score=50.13 Aligned_cols=125 Identities=18% Similarity=0.114 Sum_probs=79.0
Q ss_pred CccCHHHHHHHhhhc--CCcEEEEe--cCCCHHHHHHHHHHHHhcCCCCCceEEEE-ecCHHhHhhHHHHHhhCcEEEEe
Q 014746 205 TDKDKEVISTWGARN--NIDFLSLS--HTRGAEDVRHARDFLSQLGDLGQTQIFAK-IENTEGLTHFDEILHEADGIILA 279 (419)
Q Consensus 205 te~D~~di~~~~l~~--g~d~I~ls--fV~saedv~~v~~~l~~~~~~~~~~IiaK-IEt~~gv~nl~eI~~~sDgImIa 279 (419)
++.|.+-+. ..+++ ++|+|.+- .=.|...++.++ .+++.- .++.||+= |-|+++.+++-+ .-+|+|.+|
T Consensus 105 ~~~d~er~~-~L~~a~~~~d~iviD~AhGhs~~~i~~ik-~ir~~~--p~~~viaGNV~T~e~a~~Li~--aGAD~ikVg 178 (343)
T TIGR01305 105 SDNDLEKMT-SILEAVPQLKFICLDVANGYSEHFVEFVK-LVREAF--PEHTIMAGNVVTGEMVEELIL--SGADIVKVG 178 (343)
T ss_pred CHHHHHHHH-HHHhcCCCCCEEEEECCCCcHHHHHHHHH-HHHhhC--CCCeEEEecccCHHHHHHHHH--cCCCEEEEc
Confidence 566777775 44666 59998864 333444444433 333332 46778888 999999986654 458999986
Q ss_pred CCCccCCCCc--hhHH----HHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 280 RGNLGVDLPP--EKVF----LFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 280 rgDLg~elg~--e~v~----~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
=|==++..+- ..++ .+-..+..+++..++|+|. ..+= .-.|++-|+..|+|++|+.
T Consensus 179 iGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr------------~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 179 IGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCT------------CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred ccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcC------------chhHHHHHHHcCCCEEEEC
Confidence 3221222221 1122 2224566666777889998 5522 3489999999999999996
No 51
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.85 E-value=0.4 Score=50.78 Aligned_cols=124 Identities=17% Similarity=0.229 Sum_probs=78.9
Q ss_pred CccCHHHHHHHhhhcCCcEEEEecC--CCHHHHHHHHHHHHhcCCCCCceEEE-EecCHHhHhhHHHHHhhCcEEEEe--
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSHT--RGAEDVRHARDFLSQLGDLGQTQIFA-KIENTEGLTHFDEILHEADGIILA-- 279 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsfV--~saedv~~v~~~l~~~~~~~~~~Iia-KIEt~~gv~nl~eI~~~sDgImIa-- 279 (419)
.+.+.+... ..++.|+|+|.+-.. ++.. +.+..+.+.+.- .+..|++ -+-|+++..++-+ .-+|+|-+|
T Consensus 222 ~~~~~~r~~-~L~~aG~d~I~vd~a~g~~~~-~~~~i~~i~~~~--~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g 295 (450)
T TIGR01302 222 REFDKERAE-ALVKAGVDVIVIDSSHGHSIY-VIDSIKEIKKTY--PDLDIIAGNVATAEQAKALID--AGADGLRVGIG 295 (450)
T ss_pred chhHHHHHH-HHHHhCCCEEEEECCCCcHhH-HHHHHHHHHHhC--CCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCC
Confidence 455666665 568999999998654 3332 333223333322 3566666 7888888877655 247999865
Q ss_pred CCC--ccC---CCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 280 RGN--LGV---DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 280 rgD--Lg~---elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+|= .+- ..|.+.+ .+...+..+|++.++|+|. ..+- --.|++.|+..|+|++|+.
T Consensus 296 ~G~~~~t~~~~~~g~p~~-~~i~~~~~~~~~~~vpviadGGi~------------~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQI-TAVYDVAEYAAQSGIPVIADGGIR------------YSGDIVKALAAGADAVMLG 356 (450)
T ss_pred CCcCCccceecCCCccHH-HHHHHHHHHHhhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 551 111 1222222 3445677788889999987 5422 2468899999999999995
No 52
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=94.70 E-value=0.2 Score=57.78 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=88.0
Q ss_pred cEEEEecCCCHHHHHHHHHHHHhcCC---CCCceEEEEecCHHhHhhHHHHHhh--C---------------cEEEEeCC
Q 014746 222 DFLSLSHTRGAEDVRHARDFLSQLGD---LGQTQIFAKIENTEGLTHFDEILHE--A---------------DGIILARG 281 (419)
Q Consensus 222 d~I~lsfV~saedv~~v~~~l~~~~~---~~~~~IiaKIEt~~gv~nl~eI~~~--s---------------DgImIarg 281 (419)
...++|+.+++.||.++.-++++.|. ...+.|+.-.||.+.++|.++|++. + --||+|.-
T Consensus 547 g~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYS 626 (974)
T PTZ00398 547 GAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYS 626 (974)
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEecc
Confidence 35788999999999999998887542 2357899999999999999999985 1 27999999
Q ss_pred CccCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchh
Q 014746 282 NLGVDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRA 328 (419)
Q Consensus 282 DLg~elg~----e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~Ptra 328 (419)
|=+.+-|+ ..+..+|.++.+.|+++|+.+.. -..=.|+-...-|+..
T Consensus 627 DS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~~ 678 (974)
T PTZ00398 627 DSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQHL 678 (974)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChHH
Confidence 99999998 58899999999999999999876 5444555566666543
No 53
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.36 E-value=0.75 Score=49.37 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=77.7
Q ss_pred ccCHHHHHHHhhhcCCcEEEEecC--CCHHHHHHHHHHHHhcCCCCCceEEE-EecCHHhHhhHHHHHhhCcEEEEe--C
Q 014746 206 DKDKEVISTWGARNNIDFLSLSHT--RGAEDVRHARDFLSQLGDLGQTQIFA-KIENTEGLTHFDEILHEADGIILA--R 280 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d~I~lsfV--~saedv~~v~~~l~~~~~~~~~~Iia-KIEt~~gv~nl~eI~~~sDgImIa--r 280 (419)
+.+.+.+. ..++.|+|.|.+... ++...+..+++ +.+.- .+..|+| -+-|++....+.+ .=+|+|.+| +
T Consensus 240 ~~~~~~~~-~l~~ag~d~i~id~a~G~s~~~~~~i~~-ik~~~--~~~~v~aG~V~t~~~a~~~~~--aGad~I~vg~g~ 313 (495)
T PTZ00314 240 PEDIERAA-ALIEAGVDVLVVDSSQGNSIYQIDMIKK-LKSNY--PHVDIIAGNVVTADQAKNLID--AGADGLRIGMGS 313 (495)
T ss_pred HHHHHHHH-HHHHCCCCEEEEecCCCCchHHHHHHHH-HHhhC--CCceEEECCcCCHHHHHHHHH--cCCCEEEECCcC
Confidence 34566665 668999999998764 44443333333 22222 3577888 6777766654433 237999864 5
Q ss_pred CC-----ccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 281 GN-----LGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 281 gD-----Lg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
|= .-...|.+.+ .+-..+...|++.|+|+|. ..+. --.|++.|+..|+|++|+.
T Consensus 314 Gs~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~vIadGGi~------------~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 314 GSICITQEVCAVGRPQA-SAVYHVARYARERGVPCIADGGIK------------NSGDICKALALGADCVMLG 373 (495)
T ss_pred CcccccchhccCCCChH-HHHHHHHHHHhhcCCeEEecCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 52 1122333322 2334677788999999997 5532 2378999999999999994
No 54
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.11 E-value=0.91 Score=48.89 Aligned_cols=124 Identities=10% Similarity=0.215 Sum_probs=76.3
Q ss_pred CccCHHHHHHHhhhcCCcEEEEecC--CCHHHHHHHHHHHHhcCCCCCceEEEE-ecCHHhHhhHHHHHhhCcEEEEe--
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSHT--RGAEDVRHARDFLSQLGDLGQTQIFAK-IENTEGLTHFDEILHEADGIILA-- 279 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsfV--~saedv~~v~~~l~~~~~~~~~~IiaK-IEt~~gv~nl~eI~~~sDgImIa-- 279 (419)
.+.+.+... ..+++|+|.|++--- .+...+..+ +.+++.- .+..||++ |-|++.-.++.+ .-+|+|.++
T Consensus 246 ~~~~~~r~~-~l~~ag~d~i~iD~~~g~~~~~~~~i-~~ik~~~--p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g 319 (505)
T PLN02274 246 RESDKERLE-HLVKAGVDVVVLDSSQGDSIYQLEMI-KYIKKTY--PELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMG 319 (505)
T ss_pred CccHHHHHH-HHHHcCCCEEEEeCCCCCcHHHHHHH-HHHHHhC--CCCcEEEecCCCHHHHHHHHH--cCcCEEEECCC
Confidence 345566675 568999999987543 333322222 2333322 45777764 999998777665 347999885
Q ss_pred CCCccC-----CCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 280 RGNLGV-----DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 280 rgDLg~-----elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+|=-.. ..|.+.+. .-..+...+++.++|+|. ..+- .-.|+..|+..|+|++|+.
T Consensus 320 ~G~~~~t~~~~~~g~~~~~-~i~~~~~~~~~~~vpVIadGGI~------------~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 320 SGSICTTQEVCAVGRGQAT-AVYKVASIAAQHGVPVIADGGIS------------NSGHIVKALTLGASTVMMG 380 (505)
T ss_pred CCccccCccccccCCCccc-HHHHHHHHHHhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 441111 11222211 222355566778999998 5522 2378999999999999994
No 55
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=93.80 E-value=0.59 Score=47.43 Aligned_cols=125 Identities=13% Similarity=0.214 Sum_probs=77.2
Q ss_pred CCccCHHHHHHHhhhcC--CcEEEEec--CCCHHHHHHHHHHHHhcCCCCCceEEEE-ecCHHhHhhHHHHHhhCcEEEE
Q 014746 204 LTDKDKEVISTWGARNN--IDFLSLSH--TRGAEDVRHARDFLSQLGDLGQTQIFAK-IENTEGLTHFDEILHEADGIIL 278 (419)
Q Consensus 204 lte~D~~di~~~~l~~g--~d~I~lsf--V~saedv~~v~~~l~~~~~~~~~~IiaK-IEt~~gv~nl~eI~~~sDgImI 278 (419)
.++.|.+.+. ..++.| +|+|.+-- =.|...+..++. +.+.- +.+.+|++ +-|++....+.+ .-+|+|.+
T Consensus 91 ~t~e~~~r~~-~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~--p~~~vi~GnV~t~e~a~~l~~--aGad~I~V 164 (321)
T TIGR01306 91 VKACEYEFVT-QLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHL--PDSFVIAGNVGTPEAVRELEN--AGADATKV 164 (321)
T ss_pred CCHHHHHHHH-HHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhC--CCCEEEEecCCCHHHHHHHHH--cCcCEEEE
Confidence 4777888886 558888 79887643 333444444444 33222 45668888 999888877664 24799998
Q ss_pred e--CCCc---cCCCCchhHHHHH-HHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 279 A--RGNL---GVDLPPEKVFLFQ-KAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 279 a--rgDL---g~elg~e~v~~~q-k~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+ +|=- ..+.|.. .+..| ..|...+.+..+|+|. ..+- --.|++.|+..|+|++|+.
T Consensus 165 ~~G~G~~~~tr~~~g~g-~~~~~l~ai~ev~~a~~~pVIadGGIr------------~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 165 GIGPGKVCITKIKTGFG-TGGWQLAALRWCAKAARKPIIADGGIR------------THGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCCCCccccceeeeccC-CCchHHHHHHHHHHhcCCeEEEECCcC------------cHHHHHHHHHcCCCEEeec
Confidence 6 3321 0111111 11112 3344445556899887 5522 2479999999999999995
No 56
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.57 E-value=1.1 Score=45.75 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=77.8
Q ss_pred CccCHHHHHHHhhh--cCCcEEEE--ecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEe-
Q 014746 205 TDKDKEVISTWGAR--NNIDFLSL--SHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILA- 279 (419)
Q Consensus 205 te~D~~di~~~~l~--~g~d~I~l--sfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIa- 279 (419)
++.|.+-+. ..++ .|+|+|.+ ++=.|...+..++. +++.- +....|--.+-|+++.++|.+ +-+|++-||
T Consensus 106 ~~~d~er~~-~L~~~~~g~D~iviD~AhGhs~~~i~~ik~-ik~~~-P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGI 180 (346)
T PRK05096 106 SDADFEKTK-QILALSPALNFICIDVANGYSEHFVQFVAK-AREAW-PDKTICAGNVVTGEMVEELIL--SGADIVKVGI 180 (346)
T ss_pred CHHHHHHHH-HHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHHhC-CCCcEEEecccCHHHHHHHHH--cCCCEEEEcc
Confidence 566677775 4455 59999876 34444444444443 33332 123345567999999887644 447998864
Q ss_pred -CCCccC-----CCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 280 -RGNLGV-----DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 280 -rgDLg~-----elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+|=.-. -.|.+. ..+-.....+|+..|+|+|- ..+ ...-|++-|+..|+|++||.
T Consensus 181 GpGSiCtTr~vtGvG~PQ-ltAV~~~a~~a~~~gvpiIADGGi------------~~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 181 GPGSVCTTRVKTGVGYPQ-LSAVIECADAAHGLGGQIVSDGGC------------TVPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred cCCccccCccccccChhH-HHHHHHHHHHHHHcCCCEEecCCc------------ccccHHHHHHHcCCCEEEeC
Confidence 443211 112221 22225577778889999997 442 13479999999999999994
No 57
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=93.57 E-value=2.3 Score=40.83 Aligned_cols=151 Identities=14% Similarity=0.143 Sum_probs=95.4
Q ss_pred CceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcE
Q 014746 196 QIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADG 275 (419)
Q Consensus 196 ~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDg 275 (419)
+.+++.--+.+.=...+. .-.++|+|+|.+- +++..++.++-+.+++.| ....+..+=.| -++.++.++...|.
T Consensus 58 ~~~~dvHLMv~~p~~~i~-~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g--~k~GlalnP~T--p~~~i~~~l~~~D~ 131 (220)
T PRK08883 58 TAPIDVHLMVKPVDRIIP-DFAKAGASMITFH-VEASEHVDRTLQLIKEHG--CQAGVVLNPAT--PLHHLEYIMDKVDL 131 (220)
T ss_pred CCCEEEEeccCCHHHHHH-HHHHhCCCEEEEc-ccCcccHHHHHHHHHHcC--CcEEEEeCCCC--CHHHHHHHHHhCCe
Confidence 334555555554445565 3378999988865 677778888888888888 67778888888 56779999999999
Q ss_pred EEEeCCCccCCCCc---hhHHHHHHHHHH---HHHHcC--CcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 276 IILARGNLGVDLPP---EKVFLFQKAALY---KCNMAG--KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 276 ImIargDLg~elg~---e~v~~~qk~Ii~---a~~~~g--kpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
|++ ++++-|+ .-++...++|-+ ...++| +|+.+ .. -+.. .+...+..|+|++..
T Consensus 132 vlv----MtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGG----------I~~e---ni~~l~~aGAd~vVv 194 (220)
T PRK08883 132 ILL----MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGG----------VKVD---NIREIAEAGADMFVA 194 (220)
T ss_pred EEE----EEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECC----------CCHH---HHHHHHHcCCCEEEE
Confidence 988 2333333 122222222222 222233 66644 32 1222 345556679999988
Q ss_pred cccccCCCCHHHHHHHHHHHHHH
Q 014746 347 GAETLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 347 s~ETa~G~yP~eaV~~~~~I~~~ 369 (419)
.+.--....|.++++.+++.+.+
T Consensus 195 GSaIf~~~d~~~~i~~l~~~~~~ 217 (220)
T PRK08883 195 GSAIFGQPDYKAVIDEMRAELAK 217 (220)
T ss_pred eHHHhCCCCHHHHHHHHHHHHHh
Confidence 75543345689999988876543
No 58
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=93.42 E-value=0.47 Score=53.33 Aligned_cols=113 Identities=19% Similarity=0.106 Sum_probs=88.3
Q ss_pred cEEEEecCCCHHHHHHHHHHHHhcCC--CCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCC-Cc---------
Q 014746 222 DFLSLSHTRGAEDVRHARDFLSQLGD--LGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDL-PP--------- 289 (419)
Q Consensus 222 d~I~lsfV~saedv~~v~~~l~~~~~--~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~el-g~--------- 289 (419)
-.+++||+++..+...+. .+. .+. ....++..+||.|.++-..++|++..|++=+|.+||..-. |+
T Consensus 596 ~~~mip~~~~~~e~~~~~-~~~-~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~ 673 (740)
T COG0574 596 VEIMIPFVRTEEEREKVI-ILE-EGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDE 673 (740)
T ss_pred cEEEccccccHHHHHHHH-HHh-hhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccc
Confidence 358999999999998888 444 121 0228899999999999999999999999999999986432 32
Q ss_pred --hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 290 --EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 290 --e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+.+-.+-+..+..|+.+++.+.+ .|.-+ .|.-| .-++..|.|+|.+|
T Consensus 674 ~~~~v~~li~~a~~~~~~~~~~~~icG~~~~------~p~~a-----~~~~e~Gi~~Vs~n 723 (740)
T COG0574 674 RDPAVLKLIIIAIKAADSGGLLVGICGQAPS------DPHGA-----IFLVELGIDSVSLN 723 (740)
T ss_pred ccccHHHHHHHHHhcccccCcEEEEeccCCC------CcHHH-----HHHHHcCCCeEecC
Confidence 46777778899999999999988 87332 13333 46688999999977
No 59
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=93.30 E-value=11 Score=38.60 Aligned_cols=175 Identities=14% Similarity=0.144 Sum_probs=121.9
Q ss_pred hhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEec--CHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHH
Q 014746 217 ARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIE--NTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFL 294 (419)
Q Consensus 217 l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIE--t~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~ 294 (419)
.+.|+|.|-+. |.+.++.+.+++.-+ + .+++++|-|- -+.| +.++..-.|.+=|-||.+|- ..
T Consensus 44 ~~aGceiVRva-vp~~~~A~al~~I~~--~--~~iPlVADIHFd~~lA---l~a~~~g~dkiRINPGNig~-------~e 108 (346)
T TIGR00612 44 EEAGCDIVRVT-VPDRESAAAFEAIKE--G--TNVPLVADIHFDYRLA---ALAMAKGVAKVRINPGNIGF-------RE 108 (346)
T ss_pred HHcCCCEEEEc-CCCHHHHHhHHHHHh--C--CCCCEEEeeCCCcHHH---HHHHHhccCeEEECCCCCCC-------HH
Confidence 56899999988 788888888887665 3 5689999884 3343 44555568999999999887 34
Q ss_pred HHHHHHHHHHHcCCcE--EE-Eccccccc--cCCCcchhhH-----hHHHHHHHcCCceEEecccccCCCCHHHHHHHHH
Q 014746 295 FQKAALYKCNMAGKPA--VV-TRVVDSMT--DNLRPTRAEA-----TDVANAVLDGSDAILLGAETLRGLYPVETISIVG 364 (419)
Q Consensus 295 ~qk~Ii~a~~~~gkpv--i~-TqmLeSM~--~~~~PtraEv-----~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~ 364 (419)
--+.++.+|+++|+|+ ++ ..=|+.-+ +...||..-+ ..+.-+-..|.+=+.+|- +...+..+++.-+
T Consensus 109 ~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~---KsSdv~~~i~ayr 185 (346)
T TIGR00612 109 RVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSM---KASDVAETVAAYR 185 (346)
T ss_pred HHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE---EcCCHHHHHHHHH
Confidence 5578999999999997 44 54444322 2334654322 233344556888888874 4445666666555
Q ss_pred HHHHHHhc--------------------------------------CCcChHHHHHHHHHHHHHCCCCCCCCEEEEEeec
Q 014746 365 KICAEAKT--------------------------------------TNATSESALKVALDYGKAHGVIKSHDRVVICQKV 406 (419)
Q Consensus 365 ~I~~~aE~--------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~ 406 (419)
.+.++.+- -..++..-+..|.++++..|+-+.|-.+|-..+-
T Consensus 186 ~la~~~dyPLHlGVTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~dP~~EV~va~~IL~slglr~~g~~iiSCPtC 265 (346)
T TIGR00612 186 LLAERSDYPLHLGVTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDDPTHEVPVAFEILQSLGLRARGVEIVACPSC 265 (346)
T ss_pred HHHhhCCCCceeccccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCCcHHHHHHHHHHHHHcCCCcCCCeEEECCCC
Confidence 55555443 1147788899999999999999999888766555
Q ss_pred CCc
Q 014746 407 GDS 409 (419)
Q Consensus 407 g~t 409 (419)
|.|
T Consensus 266 GR~ 268 (346)
T TIGR00612 266 GRT 268 (346)
T ss_pred CCc
Confidence 554
No 60
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.13 E-value=1.1 Score=48.23 Aligned_cols=119 Identities=17% Similarity=0.150 Sum_probs=68.1
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCHHH----HHHHHHHHHhcCCCCCceEEE-EecCHHhHhhHHHHHhhCcEEEEeCCCc
Q 014746 209 KEVISTWGARNNIDFLSLSHTRGAED----VRHARDFLSQLGDLGQTQIFA-KIENTEGLTHFDEILHEADGIILARGNL 283 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV~saed----v~~v~~~l~~~~~~~~~~Iia-KIEt~~gv~nl~eI~~~sDgImIargDL 283 (419)
.+... ..++.|+|+|.+. .+... +..++.+-...+ ..+.|+| .|.|+++.+.+-+ .-+|+|.+|.|==
T Consensus 244 ~~ra~-~Lv~aGvd~i~vd--~a~g~~~~~~~~i~~ir~~~~--~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~G 316 (502)
T PRK07107 244 AERVP-ALVEAGADVLCID--SSEGYSEWQKRTLDWIREKYG--DSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGG 316 (502)
T ss_pred HHHHH-HHHHhCCCeEeec--CcccccHHHHHHHHHHHHhCC--CCceEEeccccCHHHHHHHHH--cCCCEEEECCCCC
Confidence 44454 5578999999987 22222 333332222222 2355555 6899988876654 3479999954432
Q ss_pred c-------CCCCchhHHHHHHHHHHHHH----HcC--CcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 284 G-------VDLPPEKVFLFQKAALYKCN----MAG--KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 284 g-------~elg~e~v~~~qk~Ii~a~~----~~g--kpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+ ...|.+.+..+ ..+..+++ +.| +|+|. .. . ..-.|++-|+..|||++|+.
T Consensus 317 s~c~tr~~~~~g~~~~~ai-~~~~~a~~~~~~~~g~~~~viadgG---------i---r~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 317 SICITREQKGIGRGQATAL-IEVAKARDEYFEETGVYIPICSDGG---------I---VYDYHMTLALAMGADFIMLG 381 (502)
T ss_pred cCcccccccCCCccHHHHH-HHHHHHHHHHHhhcCCcceEEEcCC---------C---CchhHHHHHHHcCCCeeeeC
Confidence 1 11122221111 22333333 347 89987 44 1 13489999999999999994
No 61
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.82 E-value=1.9 Score=46.19 Aligned_cols=126 Identities=16% Similarity=0.116 Sum_probs=80.7
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEecCCC-HHHHHHHHHHHHhcCCCCCceEEE-EecCHHhHhhHHHHHhhCcEEEEe--
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSHTRG-AEDVRHARDFLSQLGDLGQTQIFA-KIENTEGLTHFDEILHEADGIILA-- 279 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsfV~s-aedv~~v~~~l~~~~~~~~~~Iia-KIEt~~gv~nl~eI~~~sDgImIa-- 279 (419)
+++.+.+.+. ..++.|+|.|++--.+- ...+.+..+.+++.- .+..||| -|-|.++..++.+ .-+|+|-+|
T Consensus 224 ~~~~~~~~a~-~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~--p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig 298 (479)
T PRK07807 224 INGDVAAKAR-ALLEAGVDVLVVDTAHGHQEKMLEALRAVRALD--PGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVG 298 (479)
T ss_pred cChhHHHHHH-HHHHhCCCEEEEeccCCccHHHHHHHHHHHHHC--CCCeEEeeccCCHHHHHHHHH--cCCCEEEECcc
Confidence 3555666665 55889999988742221 233334344455443 5688999 9999999988876 347988754
Q ss_pred CCCccCCCCch--hHHH--HHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 280 RGNLGVDLPPE--KVFL--FQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 280 rgDLg~elg~e--~v~~--~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
+|=.-.--+.. ..|. +-.++..+|+..|+|+|- .. ..+ -.|++.|+..|+|++|+
T Consensus 299 ~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~gg---------i~~---~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 299 PGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGG---------VRH---PRDVALALAAGASNVMI 358 (479)
T ss_pred CCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCC---------CCC---HHHHHHHHHcCCCeeec
Confidence 43222221211 1232 225566777788999997 54 222 26889999999999998
No 62
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.71 E-value=2.1 Score=44.77 Aligned_cols=123 Identities=13% Similarity=0.136 Sum_probs=74.9
Q ss_pred ccCHHHHHHHhhhcCCcEEE--EecCCCHHHHHHHHHHHHhcCCCCCceE-EEEecCHHhHhhHHHHHhhCcEEEEeCCC
Q 014746 206 DKDKEVISTWGARNNIDFLS--LSHTRGAEDVRHARDFLSQLGDLGQTQI-FAKIENTEGLTHFDEILHEADGIILARGN 282 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d~I~--lsfV~saedv~~v~~~l~~~~~~~~~~I-iaKIEt~~gv~nl~eI~~~sDgImIargD 282 (419)
+.+.+.+. ..++.|+|+|+ .+.=. .+.+.+..+.+++.- .+..| ..-|-|.++..++.+. -+|+|.+|-|-
T Consensus 152 ~~~~~~v~-~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~--p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~ 225 (404)
T PRK06843 152 IDTIERVE-ELVKAHVDILVIDSAHGH-STRIIELVKKIKTKY--PNLDLIAGNIVTKEAALDLISV--GADCLKVGIGP 225 (404)
T ss_pred HHHHHHHH-HHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhC--CCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCC
Confidence 34456664 56899999999 44422 234444444444432 34545 4489999988777663 47999886433
Q ss_pred ccC-------CCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 283 LGV-------DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 283 Lg~-------elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
=+. ..|.+.+. +-..+...++..+.|+|. .. .- .-.|++.|+..|+|+||+.
T Consensus 226 Gs~c~tr~~~g~g~p~lt-ai~~v~~~~~~~~vpVIAdGG---------I~---~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 226 GSICTTRIVAGVGVPQIT-AICDVYEVCKNTNICIIADGG---------IR---FSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred CcCCcceeecCCCCChHH-HHHHHHHHHhhcCCeEEEeCC---------CC---CHHHHHHHHHcCCCEEEEc
Confidence 111 11222222 112334566677999997 44 22 3468999999999999984
No 63
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=92.49 E-value=2.9 Score=40.19 Aligned_cols=154 Identities=8% Similarity=0.038 Sum_probs=90.2
Q ss_pred cCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHH--hh
Q 014746 195 SQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEIL--HE 272 (419)
Q Consensus 195 p~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~--~~ 272 (419)
|+..+++-.++..=...+. ...+.|+|+|.+-+--+.+.+.+..+.+.+.| ..+.|-..-+| .++.+.+++ ..
T Consensus 64 ~~~~lDvHLm~~~p~~~i~-~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G--~~~gval~p~t--~~e~l~~~l~~~~ 138 (228)
T PTZ00170 64 PNTFLDCHLMVSNPEKWVD-DFAKAGASQFTFHIEATEDDPKAVARKIREAG--MKVGVAIKPKT--PVEVLFPLIDTDL 138 (228)
T ss_pred CCCCEEEEECCCCHHHHHH-HHHHcCCCEEEEeccCCchHHHHHHHHHHHCC--CeEEEEECCCC--CHHHHHHHHccch
Confidence 3444454444433334454 55789999998865444333777777787777 44444444444 788999998 56
Q ss_pred CcEEEEeCCCccCCCCchhHH---HHHHHHHHHHHHcC-CcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEecc
Q 014746 273 ADGIILARGNLGVDLPPEKVF---LFQKAALYKCNMAG-KPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (419)
Q Consensus 273 sDgImIargDLg~elg~e~v~---~~qk~Ii~a~~~~g-kpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ 348 (419)
.|.|++ ++++-|...-. ..-.++-+..+..+ ..+.++. --+.. .+..++..|+|.+++.+
T Consensus 139 vD~Vl~----m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdG---------GI~~~---ti~~~~~aGad~iVvGs 202 (228)
T PTZ00170 139 VDMVLV----MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDG---------GINLE---TIDIAADAGANVIVAGS 202 (228)
T ss_pred hhhHHh----hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECC---------CCCHH---HHHHHHHcCCCEEEEch
Confidence 788875 66776653221 11223322222222 2222221 11112 34566777999999875
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q 014746 349 ETLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 349 ETa~G~yP~eaV~~~~~I~~~ 369 (419)
--.....|.++++.+++.+++
T Consensus 203 aI~~a~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 203 SIFKAKDRKQAIELLRESVQK 223 (228)
T ss_pred HHhCCCCHHHHHHHHHHHHHH
Confidence 544456799999888877653
No 64
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=92.40 E-value=6 Score=37.68 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=85.2
Q ss_pred CCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEe-----------cCHHhHhhHHHHH
Q 014746 202 PTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKI-----------ENTEGLTHFDEIL 270 (419)
Q Consensus 202 p~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKI-----------Et~~gv~nl~eI~ 270 (419)
|..+..|.+.+.+.+.+.|+|.++++ +-.+...+..+. + +..++.++ -+..=+..+++.+
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~--~---~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~ 86 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA--G---DIPLIVKLNGSTSLSPKDDNDKVLVASVEDAV 86 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC--C---CCcEEEEECCCCCCCCCCCCchhhhcCHHHHH
Confidence 55688888876668788999999988 334444333331 1 12233222 1222233455655
Q ss_pred hh-CcEE--EEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhH-HHHHHHcCCceEE
Q 014746 271 HE-ADGI--ILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATD-VANAVLDGSDAIL 345 (419)
Q Consensus 271 ~~-sDgI--mIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~D-v~nav~~G~D~vm 345 (419)
+. +|++ ++-.+++. ...+...-+++...|+++|.|+|+ ...-.-...+ .-+..++.. ...+...|+|.+-
T Consensus 87 ~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~-~~~~~~i~~~~~~a~~~GaD~Ik 161 (235)
T cd00958 87 RLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKN-EKDPDLIAYAARIGAELGADIVK 161 (235)
T ss_pred HCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccC-ccCHHHHHHHHHHHHHHCCCEEE
Confidence 55 5777 55545442 345555668899999999999998 5321000000 012345554 4557788999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHHHH
Q 014746 346 LGAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 346 Ls~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
.+..+ -++.++++++..
T Consensus 162 ~~~~~--------~~~~~~~i~~~~ 178 (235)
T cd00958 162 TKYTG--------DAESFKEVVEGC 178 (235)
T ss_pred ecCCC--------CHHHHHHHHhcC
Confidence 86321 355566666544
No 65
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.28 E-value=5.5 Score=38.51 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=73.5
Q ss_pred HHHHhhhcCCcEEEEec--CCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEE---eCCCccCC
Q 014746 212 ISTWGARNNIDFLSLSH--TRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIIL---ARGNLGVD 286 (419)
Q Consensus 212 i~~~~l~~g~d~I~lsf--V~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImI---argDLg~e 286 (419)
+. .+.+.|+|+|.++. +++.++..++.+.+.+.| -...+...=+| -++.++.+++.+|++++ -+|..+ .
T Consensus 94 i~-~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~G--l~~~~~v~p~T--~~e~l~~~~~~~~~~l~msv~~~~g~-~ 167 (244)
T PRK13125 94 LN-MARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKG--LKPVFFTSPKF--PDLLIHRLSKLSPLFIYYGLRPATGV-P 167 (244)
T ss_pred HH-HHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcC--CCEEEEECCCC--CHHHHHHHHHhCCCEEEEEeCCCCCC-C
Confidence 54 56899999999985 577788999999998877 45555555555 36788999999998874 334422 2
Q ss_pred CCchhHHHHHHHHHHHHHHc--CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 287 LPPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 287 lg~e~v~~~qk~Ii~a~~~~--gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
++.-...-++..|+. .+|+.+ .. .=+. .++..+...|+|+++..
T Consensus 168 -----~~~~~~~~i~~lr~~~~~~~i~v~gG---------I~~~---e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 168 -----LPVSVERNIKRVRNLVGNKYLVVGFG---------LDSP---EDARDALSAGADGVVVG 214 (244)
T ss_pred -----chHHHHHHHHHHHHhcCCCCEEEeCC---------cCCH---HHHHHHHHcCCCEEEEC
Confidence 222233334444443 467665 33 2233 34556667799998875
No 66
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=92.13 E-value=3.8 Score=41.21 Aligned_cols=112 Identities=10% Similarity=0.197 Sum_probs=65.8
Q ss_pred CHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEE-eCCCccC
Q 014746 208 DKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIIL-ARGNLGV 285 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImI-argDLg~ 285 (419)
..+.++ .+++.++++|.++|-...+.++.+ ++ .++.+++.+=|.+-. ....+. +|+|.+ |+ +-+-
T Consensus 76 ~~~~~~-~~~~~~v~~v~~~~g~p~~~i~~l----k~----~g~~v~~~v~s~~~a---~~a~~~GaD~Ivv~g~-eagG 142 (307)
T TIGR03151 76 VDELVD-LVIEEKVPVVTTGAGNPGKYIPRL----KE----NGVKVIPVVASVALA---KRMEKAGADAVIAEGM-ESGG 142 (307)
T ss_pred HHHHHH-HHHhCCCCEEEEcCCCcHHHHHHH----HH----cCCEEEEEcCCHHHH---HHHHHcCCCEEEEECc-ccCC
Confidence 344554 668999999999886554444443 33 347888888665433 333333 799987 33 3332
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 286 DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 286 elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
..+........+++. ++.++|+|. ..+- .-.|+..++..|+|++++.
T Consensus 143 h~g~~~~~~ll~~v~---~~~~iPviaaGGI~------------~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 143 HIGELTTMALVPQVV---DAVSIPVIAAGGIA------------DGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred CCCCCcHHHHHHHHH---HHhCCCEEEECCCC------------CHHHHHHHHHcCCCEeecc
Confidence 222211122222332 344799988 5532 2456778888899999873
No 67
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=92.13 E-value=3.7 Score=37.94 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=76.4
Q ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccC---CC
Q 014746 211 VISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGV---DL 287 (419)
Q Consensus 211 di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~---el 287 (419)
.+. .+.+.|+|+|.++--.+.+ ..+..+.+...+ ..+..-+.+....+.+.++...+|.+.++.-+-|. ..
T Consensus 72 ~~~-~~~~~g~dgv~vh~~~~~~-~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~ 145 (211)
T cd00429 72 YIE-AFAKAGADIITFHAEATDH-LHRTIQLIKELG----MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKF 145 (211)
T ss_pred HHH-HHHHcCCCEEEECccchhh-HHHHHHHHHHCC----CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCccc
Confidence 354 5579999999988776633 334444444433 44444554323466677777778988776543322 11
Q ss_pred CchhHHHHHHHHHHHHH--HcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHH
Q 014746 288 PPEKVFLFQKAALYKCN--MAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (419)
Q Consensus 288 g~e~v~~~qk~Ii~a~~--~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~ 363 (419)
+...+..+ +++.+... ...+|+++ ..+ . . .++..+...|+|++...+....-..|.++++.+
T Consensus 146 ~~~~~~~i-~~~~~~~~~~~~~~pi~v~GGI--------~----~-env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 146 IPEVLEKI-RKLRELIPENNLNLLIEVDGGI--------N----L-ETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred CHHHHHHH-HHHHHHHHhcCCCeEEEEECCC--------C----H-HHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 11111111 11111111 22478866 331 1 1 446777778999999998877778888887754
No 68
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=92.09 E-value=8.3 Score=37.13 Aligned_cols=150 Identities=14% Similarity=0.196 Sum_probs=91.8
Q ss_pred ecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEE
Q 014746 199 IDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIIL 278 (419)
Q Consensus 199 ~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImI 278 (419)
++.--+.+.=...+..+ .+.|+|.|.+- +++..++.++-+++++.| ....|..+=+| -++.+..++...|.|++
T Consensus 65 ~dvHLMv~~P~~~i~~~-~~~gad~I~~H-~Ea~~~~~~~l~~Ir~~g--~k~GlalnP~T--~~~~i~~~l~~vD~Vlv 138 (223)
T PRK08745 65 IDVHLMVEPVDRIVPDF-ADAGATTISFH-PEASRHVHRTIQLIKSHG--CQAGLVLNPAT--PVDILDWVLPELDLVLV 138 (223)
T ss_pred EEEEeccCCHHHHHHHH-HHhCCCEEEEc-ccCcccHHHHHHHHHHCC--CceeEEeCCCC--CHHHHHHHHhhcCEEEE
Confidence 44444444434456534 78999988876 565567877778888888 67778888888 56778999999999988
Q ss_pred eCCCccCCCCc---hhHHHHHHHHH---HHHHHcCCcEEE--EccccccccCCCcchhhHhHHHHHHHcCCceEEecccc
Q 014746 279 ARGNLGVDLPP---EKVFLFQKAAL---YKCNMAGKPAVV--TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (419)
Q Consensus 279 argDLg~elg~---e~v~~~qk~Ii---~a~~~~gkpvi~--TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ET 350 (419)
++++-|+ .-.+..-++|- +...+++..+-+ .. --+.. -+......|+|.++..+--
T Consensus 139 ----MtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDG---------GI~~e---ti~~l~~aGaDi~V~GSai 202 (223)
T PRK08745 139 ----MSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDG---------GVKAD---NIGAIAAAGADTFVAGSAI 202 (223)
T ss_pred ----EEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEEC---------CCCHH---HHHHHHHcCCCEEEEChhh
Confidence 3444443 12222222222 222334544322 11 11222 2345566699999886443
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 014746 351 LRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 351 a~G~yP~eaV~~~~~I~~~a 370 (419)
-....|.++++.+++.+.++
T Consensus 203 F~~~d~~~~~~~lr~~~~~~ 222 (223)
T PRK08745 203 FNAPDYAQVIAQMRAAVAAV 222 (223)
T ss_pred hCCCCHHHHHHHHHHHHHhc
Confidence 22346999999998876543
No 69
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=92.02 E-value=9.3 Score=36.99 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=94.0
Q ss_pred ceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCC-HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcE
Q 014746 197 IRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRG-AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADG 275 (419)
Q Consensus 197 ~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~s-aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDg 275 (419)
.+++.--+.+.=...+..+ .++|+|+|.+-+ +. ..++..+-+.+++.| ....|..+-.|+ ++.++.++...|.
T Consensus 60 ~~~DvHLMv~~P~~~i~~~-~~aGad~it~H~-Ea~~~~~~~~i~~Ik~~G--~kaGlalnP~T~--~~~l~~~l~~vD~ 133 (229)
T PRK09722 60 KPLDVHLMVTDPQDYIDQL-ADAGADFITLHP-ETINGQAFRLIDEIRRAG--MKVGLVLNPETP--VESIKYYIHLLDK 133 (229)
T ss_pred CCeEEEEEecCHHHHHHHH-HHcCCCEEEECc-cCCcchHHHHHHHHHHcC--CCEEEEeCCCCC--HHHHHHHHHhcCE
Confidence 3345444554444556534 789999888764 64 357777778888888 677888888885 5789999999999
Q ss_pred EEEeCCCccCCCCc---hhHHHHHHHHHH---HHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEeccc
Q 014746 276 IILARGNLGVDLPP---EKVFLFQKAALY---KCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 276 ImIargDLg~elg~---e~v~~~qk~Ii~---a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~E 349 (419)
|++ ++++-|+ .-.+..-++|-+ ....+|..+.+ .+. +--+.+- +......|+|.+++.+-
T Consensus 134 VLv----MsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~I------eVD-GGI~~~~---i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 134 ITV----MTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLI------EVD-GSCNQKT---YEKLMEAGADVFIVGTS 199 (229)
T ss_pred EEE----EEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEE------EEE-CCCCHHH---HHHHHHcCCCEEEEChH
Confidence 988 3344443 122333333322 22345544422 001 1112222 33456669999988643
Q ss_pred ccCC--CCHHHHHHHHHHHHHHH
Q 014746 350 TLRG--LYPVETISIVGKICAEA 370 (419)
Q Consensus 350 Ta~G--~yP~eaV~~~~~I~~~a 370 (419)
--.| .-|.++++.|++...++
T Consensus 200 ~iF~~~~d~~~~i~~l~~~~~~~ 222 (229)
T PRK09722 200 GLFNLDEDIDEAWDIMTAQIEAA 222 (229)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHh
Confidence 2334 35899999998876654
No 70
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=91.96 E-value=3.9 Score=42.00 Aligned_cols=186 Identities=18% Similarity=0.226 Sum_probs=102.8
Q ss_pred HhhhcCCcEEEEe--cCCCHHHHHHHHHHHHhcCCCCCceEEEEe--cCHHhHhhHHHHHhhCcEEEEeCCCccCCC--C
Q 014746 215 WGARNNIDFLSLS--HTRGAEDVRHARDFLSQLGDLGQTQIFAKI--ENTEGLTHFDEILHEADGIILARGNLGVDL--P 288 (419)
Q Consensus 215 ~~l~~g~d~I~ls--fV~saedv~~v~~~l~~~~~~~~~~IiaKI--Et~~gv~nl~eI~~~sDgImIargDLg~el--g 288 (419)
...++|+|.|-++ -.+.++.+.++++.|.+.| .+++++|-| .-..|+..++ ..|.|=|-||.++-++ +
T Consensus 39 ~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g--~~iPlVADIHFd~~lAl~a~~----~v~kiRINPGNi~~~~~~~ 112 (359)
T PF04551_consen 39 RLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALG--SPIPLVADIHFDYRLALEAIE----AVDKIRINPGNIVDEFQEE 112 (359)
T ss_dssp HHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT---SS-EEEEESTTCHHHHHHHH----C-SEEEE-TTTSS----SS
T ss_pred HHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCC--CCCCeeeecCCCHHHHHHHHH----HhCeEEECCCccccccccc
Confidence 3367899987655 4444555555556666667 779999999 5666665533 3899999999996332 2
Q ss_pred chhHHHHHHHHHHHHHHcCCcE--EE-Eccccc-cccCCCcchhhH-----hHHHHHHHcCCceEEecccccCCCCHHHH
Q 014746 289 PEKVFLFQKAALYKCNMAGKPA--VV-TRVVDS-MTDNLRPTRAEA-----TDVANAVLDGSDAILLGAETLRGLYPVET 359 (419)
Q Consensus 289 ~e~v~~~qk~Ii~a~~~~gkpv--i~-TqmLeS-M~~~~~PtraEv-----~Dv~nav~~G~D~vmLs~ETa~G~yP~ea 359 (419)
...+..--+.++.+|+++|+|+ ++ ..=|+. |.+.--||..-+ ..+.-+-..|.|=+.+|-= ...+..+
T Consensus 113 ~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlK---sSdv~~~ 189 (359)
T PF04551_consen 113 LGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISLK---SSDVPET 189 (359)
T ss_dssp -SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEE---BSSHHHH
T ss_pred ccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEE---eCChHHH
Confidence 2345677788999999999997 44 333322 111112332211 2233444578888998844 3445556
Q ss_pred HHHHHHHHHHHhc--------------------------------------CCcChHHHHHHHHHHHHHCCCCCCCCEEE
Q 014746 360 ISIVGKICAEAKT--------------------------------------TNATSESALKVALDYGKAHGVIKSHDRVV 401 (419)
Q Consensus 360 V~~~~~I~~~aE~--------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~gd~vv 401 (419)
++.-+.+.++..- -..++..-+..|.++++..|+=+.|-.+|
T Consensus 190 i~ayr~la~~~dyPLHLGvTEAG~~~~g~IkSsigiG~LL~~GIGDTIRVSLt~~p~~EV~va~~IL~al~lR~~g~~~I 269 (359)
T PF04551_consen 190 IEAYRLLAERMDYPLHLGVTEAGTGEDGTIKSSIGIGALLLDGIGDTIRVSLTGDPVEEVKVAFEILQALGLRKRGPEII 269 (359)
T ss_dssp HHHHHHHHHH--S-EEEEBSSEESCHHHHHHHHHHHHHHHHTT--SEEEE-ECSSCCCHHHHHHHHHHHTTSS-SS-EEE
T ss_pred HHHHHHHHHhcCCCeEEeecCCCCcccchhHHHHHHHHHHHcCCCCEEEEECCCCchHHHHHHHHHHHHhCcCcCCceee
Confidence 6655555555543 01345556778888888888877777676
Q ss_pred EEeecCCc
Q 014746 402 ICQKVGDS 409 (419)
Q Consensus 402 ~~~g~g~t 409 (419)
-+.+-|.|
T Consensus 270 SCPtCGRt 277 (359)
T PF04551_consen 270 SCPTCGRT 277 (359)
T ss_dssp E----TT-
T ss_pred eCCCCCCc
Confidence 65554544
No 71
>PLN02591 tryptophan synthase
Probab=91.94 E-value=6.2 Score=38.66 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=74.6
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEE--EeCCCccCCCCc-hh
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGII--LARGNLGVDLPP-EK 291 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgIm--IargDLg~elg~-e~ 291 (419)
.+.+.|+|++++|-.- .++..++++.+.+.| +..|.-+=---.-+.+..|++.+.|.+ |++ .|+. |. ..
T Consensus 101 ~~~~aGv~GviipDLP-~ee~~~~~~~~~~~g----l~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvT-G~~~~ 172 (250)
T PLN02591 101 TIKEAGVHGLVVPDLP-LEETEALRAEAAKNG----IELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVT-GARAS 172 (250)
T ss_pred HHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcC----CeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCc-CCCcC
Confidence 5678999999999764 588888888887755 556665522222457899999987664 343 2221 21 23
Q ss_pred HHHHHHHHHHHHHHc-CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 292 VFLFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 292 v~~~qk~Ii~a~~~~-gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
++.-.+..++.++++ ++|+++ .. .=|+ .|+......|+|++...
T Consensus 173 ~~~~~~~~i~~vk~~~~~Pv~vGFG---------I~~~---e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 173 VSGRVESLLQELKEVTDKPVAVGFG---------ISKP---EHAKQIAGWGADGVIVG 218 (250)
T ss_pred CchhHHHHHHHHHhcCCCceEEeCC---------CCCH---HHHHHHHhcCCCEEEEC
Confidence 445556666667664 999988 55 2233 35566677799999986
No 72
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.81 E-value=2.9 Score=41.74 Aligned_cols=126 Identities=19% Similarity=0.223 Sum_probs=75.8
Q ss_pred cCHHHHHHHhhhcCCcEEEE----ecC-----------CCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHh
Q 014746 207 KDKEVISTWGARNNIDFLSL----SHT-----------RGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILH 271 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~l----sfV-----------~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~ 271 (419)
.|..+..+.+.+.|+|+|-+ |.+ ++++.+.++.+.+.+. .+++|++||= + .+.++.++++
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~~~Pv~vKl~-~-~~~~~~~~a~ 187 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA---VKIPVIAKLT-P-NITDIREIAR 187 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh---cCCCeEEECC-C-CchhHHHHHH
Confidence 34444433434468888765 222 4566666666666543 3578999994 2 4456666666
Q ss_pred h-----CcEEEE-----eCCCccCC-------------C----CchhHHHHHHHHHHHHHHc--CCcEEE-Ecccccccc
Q 014746 272 E-----ADGIIL-----ARGNLGVD-------------L----PPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTD 321 (419)
Q Consensus 272 ~-----sDgImI-----argDLg~e-------------l----g~e~v~~~qk~Ii~a~~~~--gkpvi~-TqmLeSM~~ 321 (419)
. +|||.+ +|-++-.+ . |....|...+.|-+..++. .+|+|- ..+-
T Consensus 188 ~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~----- 262 (299)
T cd02940 188 AAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE----- 262 (299)
T ss_pred HHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC-----
Confidence 3 488874 22111101 1 1123455666666666666 688887 5533
Q ss_pred CCCcchhhHhHHHHHHHcCCceEEeccc
Q 014746 322 NLRPTRAEATDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 322 ~~~PtraEv~Dv~nav~~G~D~vmLs~E 349 (419)
-..|+..++..|+|+||+..-
T Consensus 263 -------~~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 263 -------SWEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred -------CHHHHHHHHHcCCChheEcee
Confidence 356888999999999999843
No 73
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.60 E-value=8 Score=38.21 Aligned_cols=129 Identities=15% Similarity=0.200 Sum_probs=73.1
Q ss_pred cCHHHHHHHhhhcCCcEEEEe------------cCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh--
Q 014746 207 KDKEVISTWGARNNIDFLSLS------------HTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-- 272 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~ls------------fV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-- 272 (419)
.|..+..+.+.+.|+|+|-+. +-.+++.+.++.+.+.+. .+..|++|| ++ ..++..++++.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~---~~~Pv~vKl-~~-~~~~~~~~a~~~~ 176 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA---TDVPVIVKL-TP-NVTDIVEIARAAE 176 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc---cCCCEEEEe-CC-CchhHHHHHHHHH
Confidence 344444345567799999773 345666666666666543 257899998 22 23344455442
Q ss_pred ---CcEEEE-----eCC-CccC-------CC----CchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHh
Q 014746 273 ---ADGIIL-----ARG-NLGV-------DL----PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEAT 331 (419)
Q Consensus 273 ---sDgImI-----arg-DLg~-------el----g~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~ 331 (419)
+|+|.+ ++. |+.. +. |....+...+.+-...++.++|+|. ..+- ...
T Consensus 177 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~------------~~~ 244 (296)
T cd04740 177 EAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA------------SGE 244 (296)
T ss_pred HcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC------------CHH
Confidence 488765 211 2210 11 1111222333343444456899987 5422 235
Q ss_pred HHHHHHHcCCceEEecccccC
Q 014746 332 DVANAVLDGSDAILLGAETLR 352 (419)
Q Consensus 332 Dv~nav~~G~D~vmLs~ETa~ 352 (419)
|+..++..|+|+|++..---.
T Consensus 245 da~~~l~~GAd~V~igra~l~ 265 (296)
T cd04740 245 DALEFLMAGASAVQVGTANFV 265 (296)
T ss_pred HHHHHHHcCCCEEEEchhhhc
Confidence 778888899999999854333
No 74
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=91.57 E-value=3.5 Score=43.11 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=74.8
Q ss_pred cCHHHHHHHhhhcCCcEEEEec-----C----------CCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHh
Q 014746 207 KDKEVISTWGARNNIDFLSLSH-----T----------RGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILH 271 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsf-----V----------~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~ 271 (419)
.+..+....+-+.|+|+|-+.+ + +.++.+.++.+.+.+. .+++|++||= + .+.++.+|++
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~---~~~Pv~vKl~-p-~~~~~~~~a~ 187 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG---SRLPVIVKLT-P-NITDIREPAR 187 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc---cCCcEEEEcC-C-CcccHHHHHH
Confidence 3344443344567888877642 2 3455566655555443 3578999993 3 4556677766
Q ss_pred h-----CcEEEE-----eCCC-----------cc--CCC----CchhHHHHHHHHHHHHHHc---CCcEEE-Eccccccc
Q 014746 272 E-----ADGIIL-----ARGN-----------LG--VDL----PPEKVFLFQKAALYKCNMA---GKPAVV-TRVVDSMT 320 (419)
Q Consensus 272 ~-----sDgImI-----argD-----------Lg--~el----g~e~v~~~qk~Ii~a~~~~---gkpvi~-TqmLeSM~ 320 (419)
+ +|||.+ +|-. |. ... |....|...+.|-...++. ..|+|- ..+.
T Consensus 188 ~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~---- 263 (420)
T PRK08318 188 AAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE---- 263 (420)
T ss_pred HHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC----
Confidence 4 488873 3221 10 011 2233455566666666655 678887 5533
Q ss_pred cCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 321 DNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 321 ~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
...|+..++..|||+||+.
T Consensus 264 --------s~~da~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 264 --------TWRDAAEFILLGAGTVQVC 282 (420)
T ss_pred --------CHHHHHHHHHhCCChheee
Confidence 3568889999999999998
No 75
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=91.30 E-value=19 Score=36.85 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=120.3
Q ss_pred hhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHH
Q 014746 217 ARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQ 296 (419)
Q Consensus 217 l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~q 296 (419)
-+.|+|.|-++ |.+.++..++.++-++ .+++++|-|-=---+ -++.+-...|.+=|-||..|..= --
T Consensus 46 ~~aG~dIVRvt-v~~~e~A~A~~~Ik~~----~~vPLVaDiHf~~rl-a~~~~~~g~~k~RINPGNig~~~-------~v 112 (361)
T COG0821 46 ERAGCDIVRVT-VPDMEAAEALKEIKQR----LNVPLVADIHFDYRL-ALEAAECGVDKVRINPGNIGFKD-------RV 112 (361)
T ss_pred HHcCCCEEEEe-cCCHHHHHHHHHHHHh----CCCCEEEEeeccHHH-HHHhhhcCcceEEECCcccCcHH-------HH
Confidence 45799999888 7888888888776554 358889887532111 11222222699999999877653 34
Q ss_pred HHHHHHHHHcCCcE--EE-Ecccccccc--CCCcchhhH-----hHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHH
Q 014746 297 KAALYKCNMAGKPA--VV-TRVVDSMTD--NLRPTRAEA-----TDVANAVLDGSDAILLGAETLRGLYPVETISIVGKI 366 (419)
Q Consensus 297 k~Ii~a~~~~gkpv--i~-TqmLeSM~~--~~~PtraEv-----~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I 366 (419)
+.++++|+++|||+ ++ +.=||-... -..||+.-+ ..+.-+-..|.+=+.+|- +..-|.++|+.-+.+
T Consensus 113 ~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~---K~Sdv~~~v~aYr~l 189 (361)
T COG0821 113 REVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSV---KASDVQLMVAAYRLL 189 (361)
T ss_pred HHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE---EcCCHHHHHHHHHHH
Confidence 78999999999997 44 555544332 226766543 223345567888888884 455577777777766
Q ss_pred HHHHhc--------------------------------------CCcChHHHHHHHHHHHHHCCCCCCCCEEEEEeecCC
Q 014746 367 CAEAKT--------------------------------------TNATSESALKVALDYGKAHGVIKSHDRVVICQKVGD 408 (419)
Q Consensus 367 ~~~aE~--------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~g~ 408 (419)
+++.+. -..++..-+.-|.++++..|+-+.|-.++-+.+-|.
T Consensus 190 A~~~dyPLHLGvTEAG~~~~G~VkSa~alg~LL~eGIGDTIRVSLt~~P~~EV~V~~eILqslglR~~~v~~iaCP~CGR 269 (361)
T COG0821 190 AKRCDYPLHLGVTEAGMGFKGIVKSAAALGALLSEGIGDTIRVSLTADPVEEVKVAQEILQSLGLRSRGVEVIACPTCGR 269 (361)
T ss_pred HHhcCCCcccceecccCcccceehHHHHHHHHHHhcCCceEEEecCCCchhhhHHHHHHHHHhCccccCceEEECCCCCc
Confidence 666654 114677889999999999999888888887666654
Q ss_pred c
Q 014746 409 S 409 (419)
Q Consensus 409 t 409 (419)
|
T Consensus 270 ~ 270 (361)
T COG0821 270 T 270 (361)
T ss_pred e
Confidence 4
No 76
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.07 E-value=6 Score=40.07 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=67.6
Q ss_pred HHHHHHhhhcCCcEEEEecCC--C-----HHHH-HHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-----CcEE
Q 014746 210 EVISTWGARNNIDFLSLSHTR--G-----AEDV-RHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-----ADGI 276 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~lsfV~--s-----aedv-~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-----sDgI 276 (419)
.++.+.+.+.|+|+|-+.+-. . ..+. +.+.+.+.......+++|++|+ ++ .+.++.++++. +|||
T Consensus 117 ~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~dgI 194 (334)
T PRK07565 117 VDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL-SP-YFSNLANMAKRLDAAGADGL 194 (334)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe-CC-CchhHHHHHHHHHHcCCCeE
Confidence 333335466799999884321 1 1111 1233333322111357899997 33 33345555443 4888
Q ss_pred EEeCCCccCCCCc--------------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCC
Q 014746 277 ILARGNLGVDLPP--------------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGS 341 (419)
Q Consensus 277 mIargDLg~elg~--------------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~ 341 (419)
.+.-.=.+..+.+ .-.+...+.+-...++.+.|+|- ..+- -..|+..++..||
T Consensus 195 ~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~------------s~~Da~e~l~aGA 262 (334)
T PRK07565 195 VLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVH------------DAEDVIKMLLAGA 262 (334)
T ss_pred EEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCC------------CHHHHHHHHHcCC
Confidence 6632212221111 12344445454455556899886 5422 3468888999999
Q ss_pred ceEEeccc
Q 014746 342 DAILLGAE 349 (419)
Q Consensus 342 D~vmLs~E 349 (419)
|+|++...
T Consensus 263 ~~V~v~t~ 270 (334)
T PRK07565 263 DVVMIASA 270 (334)
T ss_pred CceeeehH
Confidence 99999844
No 77
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.92 E-value=5.9 Score=40.39 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=73.1
Q ss_pred CccCHHHHHHHhhhcCC--cEEEEecCC-CHHHHHHHHHHHHhcCCCCCceEEEE-ecCHHhHhhHHHHHhhCcEEEEeC
Q 014746 205 TDKDKEVISTWGARNNI--DFLSLSHTR-GAEDVRHARDFLSQLGDLGQTQIFAK-IENTEGLTHFDEILHEADGIILAR 280 (419)
Q Consensus 205 te~D~~di~~~~l~~g~--d~I~lsfV~-saedv~~v~~~l~~~~~~~~~~IiaK-IEt~~gv~nl~eI~~~sDgImIar 280 (419)
++++.+-+. ..+++|+ |+|.+--.. ..+.+.++.+.+.+.- ++..||++ +-|++...++.+ .-+|++.+|=
T Consensus 95 ~~~~~~~~~-~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~--p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~ 169 (326)
T PRK05458 95 KDDEYDFVD-QLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHL--PETFVIAGNVGTPEAVRELEN--AGADATKVGI 169 (326)
T ss_pred CHHHHHHHH-HHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhC--CCCeEEEEecCCHHHHHHHHH--cCcCEEEECC
Confidence 445555554 4478855 999982111 1233333334444433 45789996 999998877765 2379988762
Q ss_pred CCccC--C---CCchhHHHHHH-HHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEeccccc
Q 014746 281 GNLGV--D---LPPEKVFLFQK-AALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETL 351 (419)
Q Consensus 281 gDLg~--e---lg~e~v~~~qk-~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa 351 (419)
|-=+. + .+. ..+.+|- .+...+++..+|+|- .. .-+ -.|++.|+..|+|++|+.+--+
T Consensus 170 ~~G~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIAdGG---------I~~---~~Di~KaLa~GA~aV~vG~~~~ 234 (326)
T PRK05458 170 GPGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGG---------IRT---HGDIAKSIRFGATMVMIGSLFA 234 (326)
T ss_pred CCCcccccccccCC-CCCccHHHHHHHHHHHcCCCEEEeCC---------CCC---HHHHHHHHHhCCCEEEechhhc
Confidence 21111 1 111 1222222 122223345799887 44 222 4688999999999999964433
No 78
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=90.86 E-value=10 Score=34.87 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=74.4
Q ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEE---EEecCHHhHhhHHHHHh-hCcEEEEeCCCccCC
Q 014746 211 VISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIF---AKIENTEGLTHFDEILH-EADGIILARGNLGVD 286 (419)
Q Consensus 211 di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~Ii---aKIEt~~gv~nl~eI~~-~sDgImIargDLg~e 286 (419)
.++ .+.++|+|++.++.-...+.+.++.+++++.| ..++ ..-.|+.-+.+ +.. -+|.+.+.++--+..
T Consensus 69 ~~~-~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g----~~~~v~~~~~~t~~e~~~---~~~~~~d~v~~~~~~~~~~ 140 (202)
T cd04726 69 EAE-MAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG----KEVQVDLIGVEDPEKRAK---LLKLGVDIVILHRGIDAQA 140 (202)
T ss_pred HHH-HHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC----CeEEEEEeCCCCHHHHHH---HHHCCCCEEEEcCcccccc
Confidence 344 55899999999998776777778888877655 3333 45566554432 444 569888865421222
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHH
Q 014746 287 LPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETIS 361 (419)
Q Consensus 287 lg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~ 361 (419)
.|.+... +.+-...+..+.|+.++. --+ ...+..+...|+|++.+.+--..-..|.++++
T Consensus 141 ~~~~~~~---~~i~~~~~~~~~~i~~~G---------GI~---~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 141 AGGWWPE---DDLKKVKKLLGVKVAVAG---------GIT---PDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred cCCCCCH---HHHHHHHhhcCCCEEEEC---------CcC---HHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 2111111 222222222578887722 111 13467778889999998755444445666654
No 79
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=90.83 E-value=0.63 Score=52.69 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=77.7
Q ss_pred CcEEEEecCCCHHHHHHHHHHHHhcCCC------CCceEEEEecCHHhHhhHHHHHhhC----------------cEEEE
Q 014746 221 IDFLSLSHTRGAEDVRHARDFLSQLGDL------GQTQIFAKIENTEGLTHFDEILHEA----------------DGIIL 278 (419)
Q Consensus 221 ~d~I~lsfV~saedv~~v~~~l~~~~~~------~~~~IiaKIEt~~gv~nl~eI~~~s----------------DgImI 278 (419)
+.-.++|+.+++.||.++--+.++.|.. ..+.|+...||.+.++|..+|++.- --||+
T Consensus 364 ~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMl 443 (794)
T PF00311_consen 364 IGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVML 443 (794)
T ss_dssp EEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEE
T ss_pred HHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEe
Confidence 3457899999999999999888776631 2478999999999999999999851 27999
Q ss_pred eCCCccCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcc
Q 014746 279 ARGNLGVDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPT 326 (419)
Q Consensus 279 argDLg~elg~----e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~Pt 326 (419)
|--|=+-+-|+ ..+..+|+++...|+++|+.+.+ -.-=.|+-..+-|+
T Consensus 444 GYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGGGp~ 496 (794)
T PF00311_consen 444 GYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFFHGRGGSVGRGGGPT 496 (794)
T ss_dssp ECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEEEESSTCGGCTHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCcccCCCChH
Confidence 99998888887 58999999999999999999877 43333444444444
No 80
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=90.75 E-value=14 Score=34.45 Aligned_cols=145 Identities=12% Similarity=0.136 Sum_probs=79.2
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCc
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNL 283 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDL 283 (419)
++....+.+. .+.+.|+|+|.++.-.+. +.....+.+...+ ..+..-+......+.+.++...+|.+.++.-+-
T Consensus 69 ~v~d~~~~i~-~~~~~g~d~v~vh~~~~~-~~~~~~~~~~~~~----~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~ 142 (220)
T PRK05581 69 MVENPDRYVP-DFAKAGADIITFHVEASE-HIHRLLQLIKSAG----IKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNP 142 (220)
T ss_pred eeCCHHHHHH-HHHHcCCCEEEEeeccch-hHHHHHHHHHHcC----CEEEEEECCCCCHHHHHHHHhhCCEEEEEEECC
Confidence 3433333454 456999999999987664 3334444444433 444445532234667788888889887764332
Q ss_pred cCCCC-c-hhHHHHHHHHHHHHHHcCC-cEE-E-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHH
Q 014746 284 GVDLP-P-EKVFLFQKAALYKCNMAGK-PAV-V-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVE 358 (419)
Q Consensus 284 g~elg-~-e~v~~~qk~Ii~a~~~~gk-pvi-~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~e 358 (419)
|..-. + +......+++...+..++. |.+ + .. + .| + ++..+...|+|++...+.-..-..|.+
T Consensus 143 g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG-I-------~~--~---nv~~l~~~GaD~vvvgSai~~~~d~~~ 209 (220)
T PRK05581 143 GFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGG-I-------NA--D---NIKECAEAGADVFVAGSAVFGAPDYKE 209 (220)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC-C-------CH--H---HHHHHHHcCCCEEEEChhhhCCCCHHH
Confidence 22211 1 1111111223333333333 333 3 22 1 11 2 445555579999999877665567988
Q ss_pred HHHHHHHHH
Q 014746 359 TISIVGKIC 367 (419)
Q Consensus 359 aV~~~~~I~ 367 (419)
+++.+++++
T Consensus 210 ~~~~~~~~~ 218 (220)
T PRK05581 210 AIDSLRAEL 218 (220)
T ss_pred HHHHHHHHh
Confidence 888777653
No 81
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=90.66 E-value=17 Score=35.29 Aligned_cols=155 Identities=14% Similarity=0.145 Sum_probs=93.3
Q ss_pred CCCccCHHHHHHHhhhcCCcEEEEecCCCHH-HHHHHHHHHHhcCCCCCceEEEEe-cCHHhHhhHHHHHhh-CcEEEE-
Q 014746 203 TLTDKDKEVISTWGARNNIDFLSLSHTRGAE-DVRHARDFLSQLGDLGQTQIFAKI-ENTEGLTHFDEILHE-ADGIIL- 278 (419)
Q Consensus 203 ~lte~D~~di~~~~l~~g~d~I~lsfV~sae-dv~~v~~~l~~~~~~~~~~IiaKI-Et~~gv~nl~eI~~~-sDgImI- 278 (419)
.+|..++..+.....+.|++.|=+.|....+ +.+.++.+ .+.+ .+..+.+-. =+.++++. ..+. .|.|-+
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l-~~~~--~~~~~~~~~r~~~~~v~~---a~~~g~~~i~i~ 89 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAI-VALG--LPARLIVWCRAVKEDIEA---ALRCGVTAVHIS 89 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHH-HhcC--CCCEEEEeccCCHHHHHH---HHhCCcCEEEEE
Confidence 3466666666556677999999886654433 33444443 3333 345555543 34445433 3332 354433
Q ss_pred -eCCCcc--CC--CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHH-HHcCCceEEeccccc
Q 014746 279 -ARGNLG--VD--LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANA-VLDGSDAILLGAETL 351 (419)
Q Consensus 279 -argDLg--~e--lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~na-v~~G~D~vmLs~ETa 351 (419)
.-.|.- .. ...++.....+..++.|+++|..+.+ .. ..++-+.+++.+++.. ...|+|.+.|. +|.
T Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~------~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~ 162 (259)
T cd07939 90 IPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE------DASRADPDFLIEFAEVAQEAGADRLRFA-DTV 162 (259)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec------cCCCCCHHHHHHHHHHHHHCCCCEEEeC-CCC
Confidence 222221 01 11233344456789999999998765 31 3345566777777755 45699999997 888
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 014746 352 RGLYPVETISIVGKICAEA 370 (419)
Q Consensus 352 ~G~yP~eaV~~~~~I~~~a 370 (419)
=.-+|.+.-+.+..+.+..
T Consensus 163 G~~~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 163 GILDPFTTYELIRRLRAAT 181 (259)
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 8899999888888777654
No 82
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=90.56 E-value=5.7 Score=42.48 Aligned_cols=122 Identities=19% Similarity=0.189 Sum_probs=73.7
Q ss_pred CHHHHHHHhhhcCCcEEEEe--cCCCHHHHHHHHHHHHhcCCCCC-ceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCcc
Q 014746 208 DKEVISTWGARNNIDFLSLS--HTRGAEDVRHARDFLSQLGDLGQ-TQIFAKIENTEGLTHFDEILHEADGIILARGNLG 284 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~ls--fV~saedv~~v~~~l~~~~~~~~-~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg 284 (419)
+.+.+. ..++.|+|.+.+- +-++ +.+....+.+.... .+ +.++.-+-|++...++.+. -+|+|-+|=|--+
T Consensus 229 ~~e~a~-~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~--p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs 302 (486)
T PRK05567 229 NEERAE-ALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKY--PDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGS 302 (486)
T ss_pred hHHHHH-HHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhC--CCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCc
Confidence 355664 5588999987653 2222 33444444444332 23 4466888998888777652 4688877533222
Q ss_pred CCCCc--h--hHH--HHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 285 VDLPP--E--KVF--LFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 285 ~elg~--e--~v~--~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
...+- . ..| .+-..+..+|++.++|+|. ..+ .+ -.|++.|+..|||++|+.
T Consensus 303 ~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi---------~~---~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 303 ICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGI---------RY---SGDIAKALAAGASAVMLG 360 (486)
T ss_pred cccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCC---------CC---HHHHHHHHHhCCCEEEEC
Confidence 21111 0 122 2224456677778999997 442 22 378999999999999994
No 83
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=90.41 E-value=0.64 Score=52.10 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=74.6
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCC----CCceEEEEecCHHhHhhHHHHHhhC----------------cEEEEeCCCc
Q 014746 224 LSLSHTRGAEDVRHARDFLSQLGDL----GQTQIFAKIENTEGLTHFDEILHEA----------------DGIILARGNL 283 (419)
Q Consensus 224 I~lsfV~saedv~~v~~~l~~~~~~----~~~~IiaKIEt~~gv~nl~eI~~~s----------------DgImIargDL 283 (419)
.++|+.+|+.||.++-=++++.|.. ..+.|+..-||.+.++|.+.|...- --||+|-.|=
T Consensus 489 yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDS 568 (910)
T COG2352 489 YIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDS 568 (910)
T ss_pred hhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEeccccc
Confidence 5679999999999999999998854 4588999999999999999998851 2588888887
Q ss_pred cCCCCc----hhHHHHHHHHHHHHHHcCCcE
Q 014746 284 GVDLPP----EKVFLFQKAALYKCNMAGKPA 310 (419)
Q Consensus 284 g~elg~----e~v~~~qk~Ii~a~~~~gkpv 310 (419)
.-+=|+ ..+..+|+.++..|+++|+-.
T Consensus 569 nKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~L 599 (910)
T COG2352 569 NKDGGYLAANWALYKAQLALVELCEKAGVEL 599 (910)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhCceE
Confidence 777776 578899999999999999865
No 84
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.24 E-value=7.6 Score=36.73 Aligned_cols=113 Identities=14% Similarity=0.189 Sum_probs=65.2
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCC
Q 014746 209 KEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDL 287 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~el 287 (419)
.+.++ .+.+.|+|+|.++.-.+.+.++.++ + .++.++.++.+.+ .+..+.+. +|++.+....-+-..
T Consensus 70 ~~~~~-~~~~~g~d~v~l~~~~~~~~~~~~~----~----~~i~~i~~v~~~~---~~~~~~~~gad~i~~~~~~~~G~~ 137 (236)
T cd04730 70 EALLE-VALEEGVPVVSFSFGPPAEVVERLK----A----AGIKVIPTVTSVE---EARKAEAAGADALVAQGAEAGGHR 137 (236)
T ss_pred HHHHH-HHHhCCCCEEEEcCCCCHHHHHHHH----H----cCCEEEEeCCCHH---HHHHHHHcCCCEEEEeCcCCCCCC
Confidence 44554 6688999999999876654444433 2 3467888887753 34444443 588876332211111
Q ss_pred CchhHHHHHHHHHHHHH-HcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 288 PPEKVFLFQKAALYKCN-MAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 288 g~e~v~~~qk~Ii~a~~-~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+... ......+..++ ..++|++. .. .-+ ..|+..++..|+|+++++
T Consensus 138 ~~~~--~~~~~~i~~i~~~~~~Pvi~~GG---------I~~---~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 138 GTFD--IGTFALVPEVRDAVDIPVIAAGG---------IAD---GRGIAAALALGADGVQMG 185 (236)
T ss_pred Cccc--cCHHHHHHHHHHHhCCCEEEECC---------CCC---HHHHHHHHHcCCcEEEEc
Confidence 1100 01122333333 33799987 44 222 356777788999999997
No 85
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=90.16 E-value=0.52 Score=50.21 Aligned_cols=146 Identities=21% Similarity=0.182 Sum_probs=86.7
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHh----------------cC---CCCCceEEEEecCHHhHhhHHHHHhhC------
Q 014746 219 NNIDFLSLSHTRGAEDVRHARDFLSQ----------------LG---DLGQTQIFAKIENTEGLTHFDEILHEA------ 273 (419)
Q Consensus 219 ~g~d~I~lsfV~saedv~~v~~~l~~----------------~~---~~~~~~IiaKIEt~~gv~nl~eI~~~s------ 273 (419)
..+-.|++||++|++++..+.+++.. .+ .++.+.||..||+..++-|+++|+..-
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 45678999999999999998876532 11 135789999999999999999999851
Q ss_pred ----cEEEEeCCCccCCCCch----hHHHHHHHHHHHHHHcCCcEE--E-Ecccccccc--CCCcchhhHhHHHHHHHcC
Q 014746 274 ----DGIILARGNLGVDLPPE----KVFLFQKAALYKCNMAGKPAV--V-TRVVDSMTD--NLRPTRAEATDVANAVLDG 340 (419)
Q Consensus 274 ----DgImIargDLg~elg~e----~v~~~qk~Ii~a~~~~gkpvi--~-TqmLeSM~~--~~~PtraEv~Dv~nav~~G 340 (419)
=-||+||.|=++..|+- ..-.+-.++-+...+.|+|+. + .. |.-. +-.|...+ .+.+ -.-|
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIiG~G---S~PFRG~l~p~~~~--~~~~-EY~g 272 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPIIGVG---SPPFRGGLSPPNVE--RVLE-EYPG 272 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-B---SSGGGT---TTGHH--HHHH-HTTT
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeeeccC---CCCcCCCCChHhHH--HHHH-hcCC
Confidence 27999999999999973 233344556666688899983 3 32 1111 11333332 2211 1235
Q ss_pred CceEEeccccc-CCCCHHHHHHHHHHHHHHHhc
Q 014746 341 SDAILLGAETL-RGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 341 ~D~vmLs~ETa-~G~yP~eaV~~~~~I~~~aE~ 372 (419)
+..+-+= +| .=.||.+-|+-..+.+.+...
T Consensus 273 v~T~TIQ--SAfrYD~p~~~v~~ai~~l~~~~~ 303 (491)
T PF14010_consen 273 VYTFTIQ--SAFRYDYPYEEVIKAIEKLNEAPR 303 (491)
T ss_dssp -SEEEE---HHHHHTTHHHHHHHHHHHHHHGGG
T ss_pred eeEEEee--ehhhcCCCHHHHHHHHHHHHhccc
Confidence 5444331 11 235788777766666666543
No 86
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.90 E-value=11 Score=37.15 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=73.5
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCc-hhHH
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPP-EKVF 293 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~-e~v~ 293 (419)
.+.+.|+|+|.+|.. ..++..++.+.+.+.| +..+.-|=-.--.+.+..|++.++|.+-.=.-.|+ .|. ..++
T Consensus 114 ~~~~aGvdgviipDL-P~ee~~~~~~~~~~~g----i~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~Gv-TG~~~~~~ 187 (263)
T CHL00200 114 KISQAGVKGLIIPDL-PYEESDYLISVCNLYN----IELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGV-TGLKTELD 187 (263)
T ss_pred HHHHcCCeEEEecCC-CHHHHHHHHHHHHHcC----CCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCC-CCCCcccc
Confidence 568999999999986 4588888888888776 33333332233467899999999866543111111 122 2444
Q ss_pred HHHHHHHHHHHHc-CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 294 LFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 294 ~~qk~Ii~a~~~~-gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.-.+..+...|++ ++|+.+ -. .=++ .++......|+|++...
T Consensus 188 ~~~~~~i~~ir~~t~~Pi~vGFG---------I~~~---e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 188 KKLKKLIETIKKMTNKPIILGFG---------ISTS---EQIKQIKGWNINGIVIG 231 (263)
T ss_pred HHHHHHHHHHHHhcCCCEEEECC---------cCCH---HHHHHHHhcCCCEEEEC
Confidence 4445666666654 889887 43 2233 34555666799999886
No 87
>PLN02334 ribulose-phosphate 3-epimerase
Probab=89.88 E-value=14 Score=35.20 Aligned_cols=154 Identities=10% Similarity=0.078 Sum_probs=83.0
Q ss_pred cCceecCCCCCc--cCHHHHHHHhhhcCCcEEEEecCC-CHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHh
Q 014746 195 SQIRIDLPTLTD--KDKEVISTWGARNNIDFLSLSHTR-GAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILH 271 (419)
Q Consensus 195 p~~~~~lp~lte--~D~~di~~~~l~~g~d~I~lsfV~-saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~ 271 (419)
++..++.+.+.. .|..+ .+.+.|+|+|.+..-+ ..+...+..+.+...+ ..+.+...=.| -++.+.+++.
T Consensus 64 ~~~~~~vhlmv~~p~d~~~---~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g--~~iGls~~~~t--~~~~~~~~~~ 136 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVP---DFAKAGASIFTFHIEQASTIHLHRLIQQIKSAG--MKAGVVLNPGT--PVEAVEPVVE 136 (229)
T ss_pred CCCcEEEEeccCCHHHHHH---HHHHcCCCEEEEeeccccchhHHHHHHHHHHCC--CeEEEEECCCC--CHHHHHHHHh
Confidence 344444555553 33333 4478999999777653 2233333333344444 33333332123 3456777888
Q ss_pred h--CcEEEEeCCCccCCCCchhH-HHHHHHHHHHHHH-cCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 272 E--ADGIILARGNLGVDLPPEKV-FLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 272 ~--sDgImIargDLg~elg~e~v-~~~qk~Ii~a~~~-~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
. .|.+.+++-.=+..- +.. +....++-+..+. .++|+.+ ..+ |.+ .+......|+|++..
T Consensus 137 ~~~~Dyi~~~~v~pg~~~--~~~~~~~~~~i~~~~~~~~~~~I~a~GGI----------~~e---~i~~l~~aGad~vvv 201 (229)
T PLN02334 137 KGLVDMVLVMSVEPGFGG--QSFIPSMMDKVRALRKKYPELDIEVDGGV----------GPS---TIDKAAEAGANVIVA 201 (229)
T ss_pred ccCCCEEEEEEEecCCCc--cccCHHHHHHHHHHHHhCCCCcEEEeCCC----------CHH---HHHHHHHcCCCEEEE
Confidence 8 898877543321111 111 1222222222222 2567655 332 223 445666679999999
Q ss_pred cccccCCCCHHHHHHHHHHHHHHH
Q 014746 347 GAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 347 s~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
.+.-..-..|.++++.+.+.++++
T Consensus 202 gsai~~~~d~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 202 GSAVFGAPDYAEVISGLRASVEKA 225 (229)
T ss_pred ChHHhCCCCHHHHHHHHHHHHHHh
Confidence 866554567999999888876654
No 88
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=89.82 E-value=15 Score=36.16 Aligned_cols=114 Identities=17% Similarity=0.222 Sum_probs=71.8
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCc-hhHH
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPP-EKVF 293 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~-e~v~ 293 (419)
.+.+.|+|++++|-.- .|+-..+++.+.+.| +.+|.-|=-.-.-+.+..|++.++|.+=.-.=.|+ +|. ..++
T Consensus 110 ~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g----l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~~ 183 (259)
T PF00290_consen 110 EAKEAGVDGLIIPDLP-PEESEELREAAKKHG----LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTELP 183 (259)
T ss_dssp HHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT-----EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSCH
T ss_pred HHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC----CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccch
Confidence 5568899999998765 356677777777655 56666665556778899999998776543222333 233 2445
Q ss_pred HHHHHHHHHHHHc-CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 294 LFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 294 ~~qk~Ii~a~~~~-gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.-.+..++..|++ ++|+.+ -. +=+++. +.... .|+|++...
T Consensus 184 ~~l~~~i~~ik~~~~~Pv~vGFG---------I~~~e~---~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 184 DELKEFIKRIKKHTDLPVAVGFG---------ISTPEQ---AKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHHTTSS-EEEESS---------S-SHHH---HHHHH-TTSSEEEES
T ss_pred HHHHHHHHHHHhhcCcceEEecC---------CCCHHH---HHHHH-ccCCEEEEC
Confidence 5556677777766 599887 43 333433 33333 899999987
No 89
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=89.68 E-value=7.3 Score=36.60 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=74.9
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhh----HHHHHhh-----CcEEEEeCCCccC
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTH----FDEILHE-----ADGIILARGNLGV 285 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~n----l~eI~~~-----sDgImIargDLg~ 285 (419)
.+.+.|+|+|.+..--..+.+.++.+.+++.| ..+.+..+-+++.+++. ++.++.. .||..+.+..
T Consensus 75 ~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g--~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~--- 149 (215)
T PRK13813 75 AVFEAGAWGIIVHGFTGRDSLKAVVEAAAESG--GKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPATR--- 149 (215)
T ss_pred HHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcC--CeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECCCc---
Confidence 34689999999998765666888888887766 55556666666655553 4444432 2444432211
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCc-EEEEccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHH
Q 014746 286 DLPPEKVFLFQKAALYKCNMAGKP-AVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVG 364 (419)
Q Consensus 286 elg~e~v~~~qk~Ii~a~~~~gkp-vi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~ 364 (419)
.+++..+. +..+.+ .+++--+ +++-..+..++..|+|.+++..---...-|.++++.|+
T Consensus 150 ---~~~i~~l~-------~~~~~~~~ivdgGI----------~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~ 209 (215)
T PRK13813 150 ---PERVRYIR-------SRLGDELKIISPGI----------GAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAIN 209 (215)
T ss_pred ---chhHHHHH-------HhcCCCcEEEeCCc----------CCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHH
Confidence 12222221 122222 2231100 11111255667779999998755444556999999998
Q ss_pred HHHHH
Q 014746 365 KICAE 369 (419)
Q Consensus 365 ~I~~~ 369 (419)
+.+++
T Consensus 210 ~~~~~ 214 (215)
T PRK13813 210 EEIRG 214 (215)
T ss_pred HHHhc
Confidence 87754
No 90
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=88.83 E-value=8.4 Score=40.24 Aligned_cols=128 Identities=11% Similarity=0.057 Sum_probs=82.0
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEE-EecCHHhHhhHHHHHhhCcEEEEeC-CCcc-CCCCchh
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFA-KIENTEGLTHFDEILHEADGIILAR-GNLG-VDLPPEK 291 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~Iia-KIEt~~gv~nl~eI~~~sDgImIar-gDLg-~elg~e~ 291 (419)
.+.++|+|++.+..--+.+.+.++.+.+++.| ..+.. .+.....++.++++....|.+.+.+ -|=+ ..-++++
T Consensus 245 ~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~G----ikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~~k 320 (391)
T PRK13307 245 MAADATADAVVISGLAPISTIEKAIHEAQKTG----IYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGN 320 (391)
T ss_pred HHHhcCCCEEEEeccCCHHHHHHHHHHHHHcC----CEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCCcccchHHH
Confidence 45799999999998777778888888888766 34444 4444445667777766679888876 2322 1112222
Q ss_pred HHHHHHHHHHHHHH--cCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHH
Q 014746 292 VFLFQKAALYKCNM--AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKIC 367 (419)
Q Consensus 292 v~~~qk~Ii~a~~~--~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~ 367 (419)
++..++ .+.++.+ .. -+ ..++..++..|+|.+...+--..-+.|.++++.+.+.+
T Consensus 321 --------I~~ikk~~~~~~I~VdGG----------I~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 321 --------IKEIKKAGGKILVAVAGG----------VR---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred --------HHHHHHhCCCCcEEEECC----------cC---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 222333 2455555 22 11 23466777889999988755444567999998887765
No 91
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=88.45 E-value=16 Score=33.64 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=75.0
Q ss_pred HHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccC---CCC
Q 014746 212 ISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGV---DLP 288 (419)
Q Consensus 212 i~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~---elg 288 (419)
++ .+.+.|+|+|.++--.+ ++.....+.+...+ ....+ -++.....+.+.++...+|.+.+..-+-|. ...
T Consensus 72 ~~-~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g--~~~~~--~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~ 145 (210)
T TIGR01163 72 IE-DFAEAGADIITVHPEAS-EHIHRLLQLIKDLG--AKAGI--VLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFI 145 (210)
T ss_pred HH-HHHHcCCCEEEEccCCc-hhHHHHHHHHHHcC--CcEEE--EECCCCCHHHHHHHHhhCCEEEEEEEcCCCCccccc
Confidence 43 55699999999876444 44555555665555 33333 355444577888888788998875433222 111
Q ss_pred chhHHHHHHHHHHHHHHc--CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHH
Q 014746 289 PEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISI 362 (419)
Q Consensus 289 ~e~v~~~qk~Ii~a~~~~--gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~ 362 (419)
...+. .-+++.+..+.. ++|+.+ .. . + ...+..++..|+|++...+....-.-|.++++.
T Consensus 146 ~~~~~-~i~~i~~~~~~~~~~~~i~v~GG---------I-~---~env~~l~~~gad~iivgsai~~~~d~~~~~~~ 208 (210)
T TIGR01163 146 PDTLE-KIREVRKMIDENGLSILIEVDGG---------V-N---DDNARELAEAGADILVAGSAIFGADDYKEVIRS 208 (210)
T ss_pred HHHHH-HHHHHHHHHHhcCCCceEEEECC---------c-C---HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHH
Confidence 22221 112233333333 357655 32 1 1 144677778899999998665544557776654
No 92
>PRK00915 2-isopropylmalate synthase; Validated
Probab=88.20 E-value=41 Score=36.34 Aligned_cols=156 Identities=14% Similarity=0.130 Sum_probs=102.7
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEec-CCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHh---hC--c--E
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSH-TRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILH---EA--D--G 275 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsf-V~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~---~s--D--g 275 (419)
+|..++..|.+...+.|+|.|=+-| .-++.|...++.+.. .. .+..+.+..-+. .+.++..++ .+ + .
T Consensus 23 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~-~~--~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~ 97 (513)
T PRK00915 23 LTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIAR-TV--KNSTVCGLARAV--KKDIDAAAEALKPAEAPRIH 97 (513)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHh-hC--CCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEE
Confidence 5777777776566778999998876 567888888876654 33 445666655332 223333332 22 2 4
Q ss_pred EEEeCCCccCC----CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHH-HHcCCceEEeccc
Q 014746 276 IILARGNLGVD----LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANA-VLDGSDAILLGAE 349 (419)
Q Consensus 276 ImIargDLg~e----lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~na-v~~G~D~vmLs~E 349 (419)
++++-.|+-.+ ...++........++.|+.+|.-+.+ .. ...+-+...+.+++.+ ...|+|.+-|. +
T Consensus 98 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~~~~~~Ga~~i~l~-D 170 (513)
T PRK00915 98 TFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVEAAIDAGATTINIP-D 170 (513)
T ss_pred EEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHHHHHHcCCCEEEEc-c
Confidence 55666666432 22355556667899999999998876 43 2223344556666654 45599999997 8
Q ss_pred ccCCCCHHHHHHHHHHHHHHHh
Q 014746 350 TLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 350 Ta~G~yP~eaV~~~~~I~~~aE 371 (419)
|.=+-.|.+.-+++..+.+...
T Consensus 171 TvG~~~P~~~~~~i~~l~~~~~ 192 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRERVP 192 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999988877643
No 93
>PRK15452 putative protease; Provisional
Probab=87.81 E-value=5.5 Score=42.24 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=66.0
Q ss_pred ccCHHHHHHHhhhcCCcEEEEec----------CCCHHHHHHHHHHHHhcCCCCCceEEEE---ecCHHhHhhHHHHHh-
Q 014746 206 DKDKEVISTWGARNNIDFLSLSH----------TRGAEDVRHARDFLSQLGDLGQTQIFAK---IENTEGLTHFDEILH- 271 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d~I~lsf----------V~saedv~~v~~~l~~~~~~~~~~IiaK---IEt~~gv~nl~eI~~- 271 (419)
..+.+.++ .|+++|||.|-+.. -=+.+|++++.++..++| .. +... |=...-++.+.+.++
T Consensus 10 ag~~e~l~-aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g--~k--vyvt~n~i~~e~el~~~~~~l~~ 84 (443)
T PRK15452 10 AGTLKNMR-YAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALG--KK--FYVVVNIAPHNAKLKTFIRDLEP 84 (443)
T ss_pred CCCHHHHH-HHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcC--CE--EEEEecCcCCHHHHHHHHHHHHH
Confidence 35678886 88999999999932 124588998888887766 33 3333 222333444444443
Q ss_pred ---h-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHc--CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceE
Q 014746 272 ---E-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAI 344 (419)
Q Consensus 272 ---~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~--gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~v 344 (419)
. .|||+++ |+|+ +..+++. +.|+.. ||+- +.| .+. +-.+-..|++.+
T Consensus 85 l~~~gvDgvIV~--d~G~--------------l~~~ke~~p~l~ih~stqln---i~N-----~~a--~~f~~~lG~~rv 138 (443)
T PRK15452 85 VIAMKPDALIMS--DPGL--------------IMMVREHFPEMPIHLSVQAN---AVN-----WAT--VKFWQQMGLTRV 138 (443)
T ss_pred HHhCCCCEEEEc--CHHH--------------HHHHHHhCCCCeEEEEeccc---CCC-----HHH--HHHHHHCCCcEE
Confidence 3 5999994 3321 2334443 778888 8842 111 111 112233477777
Q ss_pred Eeccc
Q 014746 345 LLGAE 349 (419)
Q Consensus 345 mLs~E 349 (419)
.||.|
T Consensus 139 vLSrE 143 (443)
T PRK15452 139 ILSRE 143 (443)
T ss_pred EECCc
Confidence 77765
No 94
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=87.49 E-value=14 Score=34.77 Aligned_cols=135 Identities=17% Similarity=0.123 Sum_probs=71.3
Q ss_pred CHHHHHHHhhhcCCcEEEEe--cCCCH--HHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCC
Q 014746 208 DKEVISTWGARNNIDFLSLS--HTRGA--EDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGN 282 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~ls--fV~sa--edv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargD 282 (419)
+.+.+. .+.+.|+|+|.+- ...++ +++.++.+.+.+. ..+.+++-.-|.+-+ ...... +|.+.+..++
T Consensus 77 ~~~~v~-~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~---~~i~vi~~v~t~ee~---~~a~~~G~d~i~~~~~g 149 (221)
T PRK01130 77 TLKEVD-ALAAAGADIIALDATLRPRPDGETLAELVKRIKEY---PGQLLMADCSTLEEG---LAAQKLGFDFIGTTLSG 149 (221)
T ss_pred CHHHHH-HHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---CCCeEEEeCCCHHHH---HHHHHcCCCEEEcCCce
Confidence 445565 6689999977653 33233 6666666666551 235666655443322 222222 5887775444
Q ss_pred ccCCC--CchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHH
Q 014746 283 LGVDL--PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVET 359 (419)
Q Consensus 283 Lg~el--g~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~ea 359 (419)
+...- ........-+++. ...++|++. .. .-|. .|+..+...|+|++++.+.-. + |.+.
T Consensus 150 ~t~~~~~~~~~~~~~i~~i~---~~~~iPvia~GG---------I~t~---~~~~~~l~~GadgV~iGsai~--~-~~~~ 211 (221)
T PRK01130 150 YTEETKKPEEPDFALLKELL---KAVGCPVIAEGR---------INTP---EQAKKALELGAHAVVVGGAIT--R-PEEI 211 (221)
T ss_pred eecCCCCCCCcCHHHHHHHH---HhCCCCEEEECC---------CCCH---HHHHHHHHCCCCEEEEchHhc--C-CHHH
Confidence 32211 0111111222222 223899987 43 2222 456667778999999984433 2 4455
Q ss_pred HHHHHHHH
Q 014746 360 ISIVGKIC 367 (419)
Q Consensus 360 V~~~~~I~ 367 (419)
.+.+.+..
T Consensus 212 ~~~~~~~~ 219 (221)
T PRK01130 212 TKWFVDAL 219 (221)
T ss_pred HHHHHHHh
Confidence 55555443
No 95
>PRK07695 transcriptional regulator TenI; Provisional
Probab=87.38 E-value=15 Score=34.23 Aligned_cols=132 Identities=13% Similarity=0.050 Sum_probs=77.5
Q ss_pred ccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHh-hCcEEEEeCCCcc
Q 014746 206 DKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILH-EADGIILARGNLG 284 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~-~sDgImIargDLg 284 (419)
-.|.-++ +...++|+|.++.-. ..+..+++.+ .+..|-+.+.|.+- +.+..+ -+|.+++++---+
T Consensus 62 in~~~~l---a~~~~~~gvHl~~~~--~~~~~~r~~~------~~~~ig~s~~s~e~---a~~a~~~Gadyi~~g~v~~t 127 (201)
T PRK07695 62 INDRVDI---ALLLNIHRVQLGYRS--FSVRSVREKF------PYLHVGYSVHSLEE---AIQAEKNGADYVVYGHVFPT 127 (201)
T ss_pred EECHHHH---HHHcCCCEEEeCccc--CCHHHHHHhC------CCCEEEEeCCCHHH---HHHHHHcCCCEEEECCCCCC
Confidence 3444444 378899999998632 2244555433 23455555555443 233322 2699988774333
Q ss_pred CCC---CchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHH
Q 014746 285 VDL---PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETI 360 (419)
Q Consensus 285 ~el---g~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV 360 (419)
..- +...+ +.+-+.+...++|++. .. . +. .++..+...|+|++.+.+.-.....|.+++
T Consensus 128 ~~k~~~~~~g~----~~l~~~~~~~~ipvia~GG---------I-~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~ 190 (201)
T PRK07695 128 DCKKGVPARGL----EELSDIARALSIPVIAIGG---------I-TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKA 190 (201)
T ss_pred CCCCCCCCCCH----HHHHHHHHhCCCCEEEEcC---------C-CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHH
Confidence 211 11111 2222223445899988 44 2 22 345666678999999887766667899999
Q ss_pred HHHHHHHH
Q 014746 361 SIVGKICA 368 (419)
Q Consensus 361 ~~~~~I~~ 368 (419)
+.+.+++.
T Consensus 191 ~~~~~~~~ 198 (201)
T PRK07695 191 KRYAESIK 198 (201)
T ss_pred HHHHHHHh
Confidence 98887764
No 96
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.33 E-value=13 Score=36.41 Aligned_cols=126 Identities=16% Similarity=0.121 Sum_probs=72.2
Q ss_pred CHHHHHHHhhhcCCcEEEEecC-----------CCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh----
Q 014746 208 DKEVISTWGARNNIDFLSLSHT-----------RGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE---- 272 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~lsfV-----------~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~---- 272 (419)
|..+..+.+.+.|+|+|-+.+- ++++.+.++.+.+.+. -+..|++|+-.-...++..++++.
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl~~~~~~~~~~~~a~~l~~~ 188 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA---VDIPLLVKLSPYFDLEDIVELAKAAERA 188 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 4333334556789999987542 2455666666555542 257799998765544455555543
Q ss_pred -CcEEEEeCCCccC--C------------CCc---hhHHHHHHHHHHHHHHc--CCcEEE-EccccccccCCCcchhhHh
Q 014746 273 -ADGIILARGNLGV--D------------LPP---EKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEAT 331 (419)
Q Consensus 273 -sDgImIargDLg~--e------------lg~---e~v~~~qk~Ii~a~~~~--gkpvi~-TqmLeSM~~~~~PtraEv~ 331 (419)
+|+|.+.-+-.+. . -++ ...+...+.+-..++.. ++|+|. ..+ -| ..
T Consensus 189 Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI---------~~---~~ 256 (289)
T cd02810 189 GADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGI---------DS---GE 256 (289)
T ss_pred CCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCC---------CC---HH
Confidence 4888874221110 0 011 11222334444444555 789887 442 22 35
Q ss_pred HHHHHHHcCCceEEecc
Q 014746 332 DVANAVLDGSDAILLGA 348 (419)
Q Consensus 332 Dv~nav~~G~D~vmLs~ 348 (419)
|+..++..|+|++|+..
T Consensus 257 da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 257 DVLEMLMAGASAVQVAT 273 (289)
T ss_pred HHHHHHHcCccHheEcH
Confidence 67788889999999983
No 97
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=87.20 E-value=31 Score=33.75 Aligned_cols=113 Identities=13% Similarity=0.193 Sum_probs=67.6
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcE-EEE-eCCCccCCCCch-h
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADG-IIL-ARGNLGVDLPPE-K 291 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDg-ImI-argDLg~elg~e-~ 291 (419)
.+.+.|+|+|.+|.. ..++..++.+.+++.| -....+..=.| ..+.+..|++.++| |.+ ++...+ |.. .
T Consensus 110 ~~~~aGvdgviipDl-p~ee~~~~~~~~~~~g--l~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~T---G~~~~ 181 (256)
T TIGR00262 110 KCKEVGVDGVLVADL-PLEESGDLVEAAKKHG--VKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVT---GARNR 181 (256)
T ss_pred HHHHcCCCEEEECCC-ChHHHHHHHHHHHHCC--CcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCC---CCccc
Confidence 557899999999975 4578888888888766 33222222233 46789999999883 333 432111 110 1
Q ss_pred HHHHHHHHHHHHHH-cCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 292 VFLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 292 v~~~qk~Ii~a~~~-~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+..-....++..|+ .++|+++ .. .=|.+ ++..+...|+|+++..
T Consensus 182 ~~~~~~~~i~~lr~~~~~pi~vgfG---------I~~~e---~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 182 AASALNELVKRLKAYSAKPVLVGFG---------ISKPE---QVKQAIDAGADGVIVG 227 (256)
T ss_pred CChhHHHHHHHHHhhcCCCEEEeCC---------CCCHH---HHHHHHHcCCCEEEEC
Confidence 11112333344443 4788877 44 22333 4566677799999886
No 98
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=87.18 E-value=12 Score=33.23 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=65.7
Q ss_pred HhhhcCCcEEEEecCCC------HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCC
Q 014746 215 WGARNNIDFLSLSHTRG------AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDL 287 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~s------aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~el 287 (419)
++.+.|+|+|.++.-.. .+.++++++.+ .+..++.++.+........ +.+. .|.+.+..+.-+-..
T Consensus 79 ~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~ 151 (200)
T cd04722 79 AARAAGADGVEIHGAVGYLAREDLELIRELREAV------PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGG 151 (200)
T ss_pred HHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc------CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCC
Confidence 56789999999998773 33344444332 2578888887655443221 2222 599998776554332
Q ss_pred CchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 288 PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 288 g~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.... +.....+....+..++|++. ..+ -+ -.++..++..|+|+++++
T Consensus 152 ~~~~-~~~~~~~~~~~~~~~~pi~~~GGi---------~~---~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 152 RDAV-PIADLLLILAKRGSKVPVIAGGGI---------ND---PEDAAEALALGADGVIVG 199 (200)
T ss_pred ccCc-hhHHHHHHHHHhcCCCCEEEECCC---------CC---HHHHHHHHHhCCCEEEec
Confidence 2211 11112222334566899987 542 22 245567777799999985
No 99
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=86.93 E-value=20 Score=35.66 Aligned_cols=169 Identities=13% Similarity=0.110 Sum_probs=102.7
Q ss_pred CcceeecCceecCCCCCccCHHHHHHHhhhc-CCcEEEEe-cCCCHHHHHHHHHHHHhc---CCCCCceEEEEecCHHhH
Q 014746 189 LYTLHVSQIRIDLPTLTDKDKEVISTWGARN-NIDFLSLS-HTRGAEDVRHARDFLSQL---GDLGQTQIFAKIENTEGL 263 (419)
Q Consensus 189 ~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~-g~d~I~ls-fV~saedv~~v~~~l~~~---~~~~~~~IiaKIEt~~gv 263 (419)
|-|..-|+.. +|.+++..|.+..++. |++.|=+. |.-|++|-+.+++..... +......+++.+....++
T Consensus 6 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 80 (280)
T cd07945 6 RDGEQTSGVS-----FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSV 80 (280)
T ss_pred CCcCcCCCCc-----cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHH
Confidence 3444445544 3566677775332354 99999885 558998877777766422 100135676666665554
Q ss_pred hhHHHHHhh-CcEEEE--eCCCccCC----CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCC-CcchhhHhHHH
Q 014746 264 THFDEILHE-ADGIIL--ARGNLGVD----LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNL-RPTRAEATDVA 334 (419)
Q Consensus 264 ~nl~eI~~~-sDgImI--argDLg~e----lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~-~PtraEv~Dv~ 334 (419)
+.+ +++ .+.|-+ .-.|.-.. ...++.....+.++..|+.+|..+.+ -.. ..+| +-+.+.+.+++
T Consensus 81 ~~A---~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d----~~~~~r~~~~~~~~~~ 153 (280)
T cd07945 81 DWI---KSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED----WSNGMRDSPDYVFQLV 153 (280)
T ss_pred HHH---HHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe----CCCCCcCCHHHHHHHH
Confidence 443 322 354433 22332222 12245555567789999999988766 321 2222 22345556655
Q ss_pred H-HHHcCCceEEecccccCCCCHHHHHHHHHHHHHHH
Q 014746 335 N-AVLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 335 n-av~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
. +...|+|.+-|. +|.=.-.|.+.-++++.+.+..
T Consensus 154 ~~~~~~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~~ 189 (280)
T cd07945 154 DFLSDLPIKRIMLP-DTLGILSPFETYTYISDMVKRY 189 (280)
T ss_pred HHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHHHhhC
Confidence 4 455699999997 8888889999999998887654
No 100
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=86.87 E-value=20 Score=36.80 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=94.1
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEecCCCHH-HHHHHHHHHHhcCCCCCceEEEEe-cCHHhHhhHHHHHhh-CcEE--EE
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSHTRGAE-DVRHARDFLSQLGDLGQTQIFAKI-ENTEGLTHFDEILHE-ADGI--IL 278 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsfV~sae-dv~~v~~~l~~~~~~~~~~IiaKI-Et~~gv~nl~eI~~~-sDgI--mI 278 (419)
+|..++..+.+...+.|++.|=+.|....+ +.+.++.+ .+.+ ....+.+-. -+.+.+ +..++. .|.| ++
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i-~~~~--~~~~i~~~~r~~~~di---~~a~~~g~~~i~i~~ 93 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAI-VALG--LPARLMAWCRARDADI---EAAARCGVDAVHISI 93 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH-HHcC--CCcEEEEEcCCCHHHH---HHHHcCCcCEEEEEE
Confidence 566777776656677899999886655443 33444444 3333 334555544 333433 333333 3543 33
Q ss_pred eCCCccCC--CC--chhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHH-HHHcCCceEEecccccC
Q 014746 279 ARGNLGVD--LP--PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGAETLR 352 (419)
Q Consensus 279 argDLg~e--lg--~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~n-av~~G~D~vmLs~ETa~ 352 (419)
.-.|+-.+ ++ .++........++.++++|..+-+ .. ..++-+...+.+++. +...|+|.+-|. +|.=
T Consensus 94 ~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e------d~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DT~G 166 (365)
T TIGR02660 94 PVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE------DASRADPDFLVELAEVAAEAGADRFRFA-DTVG 166 (365)
T ss_pred ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec------CCCCCCHHHHHHHHHHHHHcCcCEEEEc-ccCC
Confidence 44443222 11 233344446788899999988765 22 344555666666664 445699999987 8888
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 014746 353 GLYPVETISIVGKICAEA 370 (419)
Q Consensus 353 G~yP~eaV~~~~~I~~~a 370 (419)
.-.|.+.-+++..+.+..
T Consensus 167 ~~~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 167 ILDPFSTYELVRALRQAV 184 (365)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999998887765
No 101
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=86.83 E-value=18 Score=35.43 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=82.9
Q ss_pred CCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhH----------hhHHHHHh
Q 014746 202 PTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGL----------THFDEILH 271 (419)
Q Consensus 202 p~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv----------~nl~eI~~ 271 (419)
|.-+..|.+.+-..+++.|+|.|+++. --+...+..+ + .++.++.+|++.-++ ..+++.++
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~--~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~ 104 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---G--RDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIK 104 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---C--CCCcEEEEEcCCCCCCCCCCcceeeecHHHHHH
Confidence 445777877665688899999999983 3333333323 2 346688888843333 22455555
Q ss_pred h-CcEEEEe--CCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhH-HHHHHHcCCceEEe
Q 014746 272 E-ADGIILA--RGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATD-VANAVLDGSDAILL 346 (419)
Q Consensus 272 ~-sDgImIa--rgDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~D-v~nav~~G~D~vmL 346 (419)
. +|++.+- -|++. ...+...-+++...|+++|+|+++ ..-.---+... -+..++.. ..-+...|+|.+=.
T Consensus 105 ~Gad~v~~~~~~g~~~----~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~-~~~~~i~~a~~~a~e~GAD~vKt 179 (267)
T PRK07226 105 LGADAVSVHVNVGSET----EAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNE-YDPEVVAHAARVAAELGADIVKT 179 (267)
T ss_pred cCCCEEEEEEecCChh----HHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCC-ccHHHHHHHHHHHHHHCCCEEee
Confidence 4 5655442 12211 334555557899999999999987 42100001111 12233333 23456689999955
Q ss_pred cccccCCCCHHHHHHHHHHHHHH
Q 014746 347 GAETLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 347 s~ETa~G~yP~eaV~~~~~I~~~ 369 (419)
+ |+- -++.|++++..
T Consensus 180 ~-------~~~-~~~~l~~~~~~ 194 (267)
T PRK07226 180 N-------YTG-DPESFREVVEG 194 (267)
T ss_pred C-------CCC-CHHHHHHHHHh
Confidence 5 321 25667777654
No 102
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=86.63 E-value=25 Score=36.83 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=81.2
Q ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEE-EecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCC
Q 014746 211 VISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFA-KIENTEGLTHFDEILHE-ADGIILARGNLGVDLP 288 (419)
Q Consensus 211 di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~Iia-KIEt~~gv~nl~eI~~~-sDgImIargDLg~elg 288 (419)
++. .+.++|+|+|.++--.+...+.++.+.+.+.| ..++. .+=....++.+.+..+. +|.|.+++|--+...+
T Consensus 73 ~v~-~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G----~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~ 147 (430)
T PRK07028 73 EVE-MAAKAGADIVCILGLADDSTIEDAVRAARKYG----VRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLG 147 (430)
T ss_pred HHH-HHHHcCCCEEEEecCCChHHHHHHHHHHHHcC----CEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcC
Confidence 564 56899999999864444345666666666655 33333 12112234556666665 7999888764222222
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHH
Q 014746 289 PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKIC 367 (419)
Q Consensus 289 ~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~ 367 (419)
...+ ...+++. ...+.|+.+ .. . +. ..+..++..|+|++.+.+.-..-.-|.++++.+++.+
T Consensus 148 ~~~~-~~l~~l~---~~~~iPI~a~GG---------I-~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i 210 (430)
T PRK07028 148 KDPL-ELLKEVS---EEVSIPIAVAGG---------L-DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAI 210 (430)
T ss_pred CChH-HHHHHHH---hhCCCcEEEECC---------C-CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHH
Confidence 2111 1222222 234688877 43 1 22 3356677889999998877666667888888887766
Q ss_pred HH
Q 014746 368 AE 369 (419)
Q Consensus 368 ~~ 369 (419)
.+
T Consensus 211 ~~ 212 (430)
T PRK07028 211 DS 212 (430)
T ss_pred hc
Confidence 43
No 103
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=86.09 E-value=32 Score=32.84 Aligned_cols=160 Identities=16% Similarity=0.113 Sum_probs=98.6
Q ss_pred CCCccCHHHHHHHhhhcCCcEEEEecCCCH------HHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcE
Q 014746 203 TLTDKDKEVISTWGARNNIDFLSLSHTRGA------EDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADG 275 (419)
Q Consensus 203 ~lte~D~~di~~~~l~~g~d~I~lsfV~sa------edv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDg 275 (419)
.+|..++..+.....+.|+|.|-+.+-.+. ++..++-+.+.+.+ .+..+.+..=+ +.+.++...+. .|.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~--~~~~~~~l~~~--~~~~i~~a~~~g~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLV--PNVKLQALVRN--REKGIERALEAGVDE 90 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhcc--CCcEEEEEccC--chhhHHHHHhCCcCE
Confidence 345555555444556789999999998887 77766666666655 34555555533 23444444444 365
Q ss_pred EEEe--CCCccCC----CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHH-HHHcCCceEEec
Q 014746 276 IILA--RGNLGVD----LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLG 347 (419)
Q Consensus 276 ImIa--rgDLg~e----lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~n-av~~G~D~vmLs 347 (419)
|.+. -.|.-.. .+.+....--...++.++++|+++.+ ... +..+.-+..++.+++. +...|+|.+.|.
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~----~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED----AFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe----ecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 5442 1110000 12223444446788889999999877 421 1122345566666664 566799999987
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHh
Q 014746 348 AETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 348 ~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
+|.=.-+|.+.-++++.+.+...
T Consensus 167 -Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 167 -DTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred -hhcCCcCHHHHHHHHHHHHHhCC
Confidence 77677889888888877776655
No 104
>PRK04302 triosephosphate isomerase; Provisional
Probab=86.03 E-value=32 Score=32.68 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=76.6
Q ss_pred HhhhcCCcEEEEecC---CCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhC-cEEEEeCCC-ccCCCCc
Q 014746 215 WGARNNIDFLSLSHT---RGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEA-DGIILARGN-LGVDLPP 289 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV---~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~s-DgImIargD-Lg~elg~ 289 (419)
.+.+.|+|+|+++.- ...+++.+..+...+.| +..|.-+-+ .+.+..+.... |.|-+.+-+ .|...+.
T Consensus 80 ~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~G----l~~I~~v~~---~~~~~~~~~~~~~~I~~~p~~~igt~~~~ 152 (223)
T PRK04302 80 AVKDAGAVGTLINHSERRLTLADIEAVVERAKKLG----LESVVCVNN---PETSAAAAALGPDYVAVEPPELIGTGIPV 152 (223)
T ss_pred HHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCC----CeEEEEcCC---HHHHHHHhcCCCCEEEEeCccccccCCCC
Confidence 456899999999986 44455555555554433 555544444 34555554443 555554433 3333232
Q ss_pred h-hHHHHHHHHHHHHHHc--CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHH
Q 014746 290 E-KVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVG 364 (419)
Q Consensus 290 e-~v~~~qk~Ii~a~~~~--gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~ 364 (419)
. ..+..-+++++..++. ++|++. .. .= .-.++..+...|+|+++..+....-..|.+.++-+.
T Consensus 153 ~~~~~~~i~~~~~~ir~~~~~~pvi~Ggg---------I~---~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~ 219 (223)
T PRK04302 153 SKAKPEVVEDAVEAVKKVNPDVKVLCGAG---------IS---TGEDVKAALELGADGVLLASGVVKAKDPEAALRDLV 219 (223)
T ss_pred CcCCHHHHHHHHHHHHhccCCCEEEEECC---------CC---CHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHH
Confidence 1 2344445566666653 578876 32 21 234456666789999999877777777777766544
No 105
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=85.93 E-value=36 Score=34.98 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=97.2
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEec-CCCHHHHHHHHHHHHhcCCCCCceEEEEec-CHHhHhhHHHHHhh-CcEEEE--
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSH-TRGAEDVRHARDFLSQLGDLGQTQIFAKIE-NTEGLTHFDEILHE-ADGIIL-- 278 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsf-V~saedv~~v~~~l~~~~~~~~~~IiaKIE-t~~gv~nl~eI~~~-sDgImI-- 278 (419)
+|..++..|.....+.|++.|=+.| +.+.++.+.++.+.. .+ ....+.+.+- +.+. ++..++. .|.|.+
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~--~~~~v~~~~r~~~~d---i~~a~~~g~~~i~i~~ 92 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EG--LNAEICSLARALKKD---IDKAIDCGVDSIHTFI 92 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cC--CCcEEEEEcccCHHH---HHHHHHcCcCEEEEEE
Confidence 4667777776566778999998755 566677666665543 34 4456666553 2333 3333333 354433
Q ss_pred eCCCccCC----CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHH-HHHcCCceEEecccccC
Q 014746 279 ARGNLGVD----LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGAETLR 352 (419)
Q Consensus 279 argDLg~e----lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~n-av~~G~D~vmLs~ETa~ 352 (419)
+-.|+-.+ .+.++........++.|+++|..+.+ .. ...+-+.+++.+++. +...|+|.+.|. +|.=
T Consensus 93 ~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~~g~~~i~l~-DT~G 165 (363)
T TIGR02090 93 ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRAEEAGADRINIA-DTVG 165 (363)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHHHhCCCCEEEEe-CCCC
Confidence 44444221 22344455557788999999998766 32 234445666666654 456799999997 7888
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 014746 353 GLYPVETISIVGKICAEA 370 (419)
Q Consensus 353 G~yP~eaV~~~~~I~~~a 370 (419)
.-+|.+.-+.++.+....
T Consensus 166 ~~~P~~v~~li~~l~~~~ 183 (363)
T TIGR02090 166 VLTPQKMEELIKKLKENV 183 (363)
T ss_pred ccCHHHHHHHHHHHhccc
Confidence 889999888888876544
No 106
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=85.72 E-value=31 Score=37.10 Aligned_cols=157 Identities=12% Similarity=0.097 Sum_probs=100.4
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEec-CCCHHHHHHHHHHHHhcCCCCCceEEEEec-CHHhHhhHHHHHhh--Cc--EEE
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSH-TRGAEDVRHARDFLSQLGDLGQTQIFAKIE-NTEGLTHFDEILHE--AD--GII 277 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsf-V~saedv~~v~~~l~~~~~~~~~~IiaKIE-t~~gv~nl~eI~~~--sD--gIm 277 (419)
+|..++..|.+...+.|+|.|=+-| +.++.|...++.+... . .+..+.+..- ....++..-+-+.. .+ .++
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~-~--~~~~i~al~r~~~~did~a~~al~~~~~~~v~i~ 96 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIART-V--KNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTF 96 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHh-C--CCCEEEEEcCCCHHhHHHHHHhccccCCCEEEEE
Confidence 4777777776565678999998866 5668888888766543 3 3455666554 34444433222221 23 344
Q ss_pred EeCCCccCCC----CchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHH-HHHcCCceEEeccccc
Q 014746 278 LARGNLGVDL----PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGAETL 351 (419)
Q Consensus 278 IargDLg~el----g~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~n-av~~G~D~vmLs~ETa 351 (419)
+.-.|+-.+. ..+++.......+..|+.+|..+.+ .+ ...+-....+.+++. +...|+|.+.|. +|.
T Consensus 97 ~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E------d~~r~d~~~l~~~~~~~~~~Ga~~i~l~-DTv 169 (494)
T TIGR00973 97 IATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE------DAGRTEIPFLARIVEAAINAGATTINIP-DTV 169 (494)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC------CCCCCCHHHHHHHHHHHHHcCCCEEEeC-CCC
Confidence 4444544432 2255556667899999999998776 33 111222344455554 455699999997 899
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 014746 352 RGLYPVETISIVGKICAEA 370 (419)
Q Consensus 352 ~G~yP~eaV~~~~~I~~~a 370 (419)
=+-.|-+.-+.+..+.+..
T Consensus 170 G~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 170 GYALPAEYGNLIKGLRENV 188 (494)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999988888887765
No 107
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=85.69 E-value=45 Score=34.49 Aligned_cols=156 Identities=17% Similarity=0.187 Sum_probs=95.9
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEecCCCHH-HHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEE--EEe
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSHTRGAE-DVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGI--ILA 279 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsfV~sae-dv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgI--mIa 279 (419)
+|..++..|.....+.|+|.|=+.|....+ +.+.++.+ .+.+ ....+++-.-. -.+.++..++. .|.| ++.
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i-~~~~--~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAI-AKLG--LNASILALNRA--VKSDIDASIDCGVDAVHIFIA 97 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHH-HhcC--CCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEc
Confidence 466667666556567899999876654443 33444444 3344 34455554322 12234443433 3543 444
Q ss_pred CCCccCC----CCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHH-HHcCCceEEecccccCCC
Q 014746 280 RGNLGVD----LPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANA-VLDGSDAILLGAETLRGL 354 (419)
Q Consensus 280 rgDLg~e----lg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~na-v~~G~D~vmLs~ETa~G~ 354 (419)
-.|+-.+ ...++........++.|++.|..+.++ .....+-+...+.+++.+ ...|+|.+.|. +|.=.-
T Consensus 98 ~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~-----~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~~ 171 (378)
T PRK11858 98 TSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS-----AEDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGIL 171 (378)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE-----eccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCCC
Confidence 4453221 223445555577888999999887762 113445556677666644 45699999997 888889
Q ss_pred CHHHHHHHHHHHHHHH
Q 014746 355 YPVETISIVGKICAEA 370 (419)
Q Consensus 355 yP~eaV~~~~~I~~~a 370 (419)
+|.+.-++++.+.+..
T Consensus 172 ~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 172 DPFTMYELVKELVEAV 187 (378)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999888887765
No 108
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=85.48 E-value=11 Score=40.40 Aligned_cols=124 Identities=16% Similarity=0.099 Sum_probs=77.3
Q ss_pred CccCHHHHHHHhhhcCCcEEEE--ecCCCHHHHHHHHHHHHhcCCCCCceEEEE-ecCHHhHhhHHHHHhhCcEEEEeCC
Q 014746 205 TDKDKEVISTWGARNNIDFLSL--SHTRGAEDVRHARDFLSQLGDLGQTQIFAK-IENTEGLTHFDEILHEADGIILARG 281 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~l--sfV~saedv~~v~~~l~~~~~~~~~~IiaK-IEt~~gv~nl~eI~~~sDgImIarg 281 (419)
.+.+.+-+. ..++.|+|.|++ +.-++ +.+.++.+.+++.. .++.||+= +-|+++..++.+ .-+|+|=||=|
T Consensus 223 ~~~~~~ra~-~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~--~~~~vi~g~~~t~~~~~~l~~--~G~d~i~vg~g 296 (475)
T TIGR01303 223 NGDVGGKAK-ALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALD--LGVPIVAGNVVSAEGVRDLLE--AGANIIKVGVG 296 (475)
T ss_pred CccHHHHHH-HHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHC--CCCeEEEeccCCHHHHHHHHH--hCCCEEEECCc
Confidence 445556665 558899999886 44333 44444444555443 46788886 888888877765 23688875432
Q ss_pred --Cc---cCCCCchhHHH--HHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 282 --NL---GVDLPPEKVFL--FQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 282 --DL---g~elg~e~v~~--~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
=- ..-.++ .+|. .-.....+|+.+|+|+|- .. .. .-.|++.|+..|+|++|+.
T Consensus 297 ~Gs~~ttr~~~~~-g~~~~~a~~~~~~~~~~~~~~viadGg---------i~---~~~di~kala~GA~~vm~g 357 (475)
T TIGR01303 297 PGAMCTTRMMTGV-GRPQFSAVLECAAEARKLGGHVWADGG---------VR---HPRDVALALAAGASNVMVG 357 (475)
T ss_pred CCccccCccccCC-CCchHHHHHHHHHHHHHcCCcEEEeCC---------CC---CHHHHHHHHHcCCCEEeec
Confidence 11 111111 1222 224566667888999997 44 22 2379999999999999995
No 109
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=85.38 E-value=39 Score=33.16 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=98.9
Q ss_pred eecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHH----------HHHHHHHHHhcCCCCCceEEEEecCHHh
Q 014746 193 HVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAED----------VRHARDFLSQLGDLGQTQIFAKIENTEG 262 (419)
Q Consensus 193 nlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saed----------v~~v~~~l~~~~~~~~~~IiaKIEt~~g 262 (419)
..|+..+ |..++..|.+..-+.|+|+|=+.|..+.++ .+.++++..... .+.++.+..-....
T Consensus 11 q~~~~~f-----~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~ 83 (266)
T cd07944 11 YVNNWDF-----GDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK--GNTKIAVMVDYGND 83 (266)
T ss_pred cccCccC-----CHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc--cCCEEEEEECCCCC
Confidence 4556554 777788876565668999998888765321 344444443322 25677777666542
Q ss_pred -HhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHH-HHHHc
Q 014746 263 -LTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVA-NAVLD 339 (419)
Q Consensus 263 -v~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~-nav~~ 339 (419)
++.++..... .|.|-++ .+...+.. ....++.++++|..+.+ ++.. ..+-+..++.+.+ .+...
T Consensus 84 ~~~~l~~a~~~gv~~iri~-------~~~~~~~~-~~~~i~~ak~~G~~v~~-~~~~----a~~~~~~~~~~~~~~~~~~ 150 (266)
T cd07944 84 DIDLLEPASGSVVDMIRVA-------FHKHEFDE-ALPLIKAIKEKGYEVFF-NLMA----ISGYSDEELLELLELVNEI 150 (266)
T ss_pred CHHHHHHHhcCCcCEEEEe-------cccccHHH-HHHHHHHHHHCCCeEEE-EEEe----ecCCCHHHHHHHHHHHHhC
Confidence 2223332222 3666553 22233333 35678888999987765 1111 2234567777776 44556
Q ss_pred CCceEEecccccCCCCHHHHHHHHHHHHHHHh
Q 014746 340 GSDAILLGAETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 340 G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
|+|.+.|. +|.=.-+|.+.-+++..+.+...
T Consensus 151 g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 151 KPDVFYIV-DSFGSMYPEDIKRIISLLRSNLD 181 (266)
T ss_pred CCCEEEEe-cCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999997 88888999999888888876554
No 110
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=85.11 E-value=35 Score=33.46 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=77.8
Q ss_pred HHHHHhhhcCCcEEEEecCC-CHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCC-CC
Q 014746 211 VISTWGARNNIDFLSLSHTR-GAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVD-LP 288 (419)
Q Consensus 211 di~~~~l~~g~d~I~lsfV~-saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~e-lg 288 (419)
.+. .+..+|+|+|.+---- +.+++.++.+...+.| ..+++-+-|.+-++...+. -+|-|.+..-||... ..
T Consensus 125 qi~-~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG----l~~lvevh~~~E~~~A~~~--gadiIgin~rdl~~~~~d 197 (260)
T PRK00278 125 QIY-EARAAGADAILLIVAALDDEQLKELLDYAHSLG----LDVLVEVHDEEELERALKL--GAPLIGINNRNLKTFEVD 197 (260)
T ss_pred HHH-HHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC----CeEEEEeCCHHHHHHHHHc--CCCEEEECCCCcccccCC
Confidence 353 5589999998876433 5677888777776655 4555555566644332211 368887876676433 12
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHH
Q 014746 289 PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVG 364 (419)
Q Consensus 289 ~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~ 364 (419)
++.. .+++.... ...|+|. .. .=|.. |+..+...|+|+++....-..-..|.++++-+.
T Consensus 198 ~~~~----~~l~~~~p-~~~~vIaegG---------I~t~e---d~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~ 257 (260)
T PRK00278 198 LETT----ERLAPLIP-SDRLVVSESG---------IFTPE---DLKRLAKAGADAVLVGESLMRADDPGAALRELL 257 (260)
T ss_pred HHHH----HHHHHhCC-CCCEEEEEeC---------CCCHH---HHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHh
Confidence 2212 22322211 1346665 44 33333 455666679999999877777788988887553
No 111
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=84.75 E-value=21 Score=36.59 Aligned_cols=135 Identities=20% Similarity=0.289 Sum_probs=86.8
Q ss_pred CccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHH-----h---------cCCCCCceEEEEecCHHhHhhHHHHH
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLS-----Q---------LGDLGQTQIFAKIENTEGLTHFDEIL 270 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~-----~---------~~~~~~~~IiaKIEt~~gv~nl~eI~ 270 (419)
.+++++.+. .|++.|+|+|.++- +++..++++-+ . ...........+|.+++-.+.+.+.+
T Consensus 12 ~~~~k~~vt-~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~ 86 (344)
T PRK02290 12 WEERKEVVT-TALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELA 86 (344)
T ss_pred chhHHHHHH-HHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhh
Confidence 367777785 88999999998764 56665554311 0 00013567888999999999999999
Q ss_pred hhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEecccc
Q 014746 271 HEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (419)
Q Consensus 271 ~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ET 350 (419)
...|-+++--.|- --+|+| .+|.+. ....-++. . .-+-+|..-.+.....|+|+|+|..+
T Consensus 87 ~~~~~viv~~~dW-~iIPlE-------nlIA~~-~~~~~l~a-~---------v~~~~eA~~a~~~LE~G~dGVvl~~~- 146 (344)
T PRK02290 87 KEVDYVIVEGRDW-TIIPLE-------NLIADL-GQSGKIIA-G---------VADAEEAKLALEILEKGVDGVLLDPD- 146 (344)
T ss_pred ccCCEEEEECCCC-cEecHH-------HHHhhh-cCCceEEE-E---------eCCHHHHHHHHHHhccCCCeEEECCC-
Confidence 8888888744442 223433 455555 33333333 1 22346777778999999999999855
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 014746 351 LRGLYPVETISIVGKICAE 369 (419)
Q Consensus 351 a~G~yP~eaV~~~~~I~~~ 369 (419)
-| ..++-+...+.+
T Consensus 147 ----d~-~ei~~~~~~~~~ 160 (344)
T PRK02290 147 ----DP-NEIKAIVALIEE 160 (344)
T ss_pred ----CH-HHHHHHHHHHhc
Confidence 23 445555555554
No 112
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=84.50 E-value=2.1 Score=44.03 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=44.2
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 28 AMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 28 ~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
.+..+-+.+||..++.+..+.|+++|+|++=|.-+||..+...++++++|+.
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~ 146 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKK 146 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHh
Confidence 4567888899999999999999999999999999999999888888777764
No 113
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=84.46 E-value=34 Score=33.52 Aligned_cols=113 Identities=19% Similarity=0.105 Sum_probs=74.7
Q ss_pred cCHHHHHHHhhhcCCcEEEE-----ecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeC
Q 014746 207 KDKEVISTWGARNNIDFLSL-----SHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILAR 280 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~l-----sfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIar 280 (419)
.|..++.+...+.|+++|.+ -|-.+.++++.+++.. +++|+.|==-..-. .+++...+ +|+|.+.-
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-------~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-------SLPVLRKDFIIDPY-QIYEARAAGADAILLIV 141 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-------CCCEEeeeecCCHH-HHHHHHHcCCCEEEEEe
Confidence 35566655557789999987 5778999999998753 35555421000111 23433333 69998876
Q ss_pred CCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEeccc
Q 014746 281 GNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 281 gDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~E 349 (419)
.+|. +.--++++..|+..|..+++ ++ +.+ ++..|...|+|.+.+++.
T Consensus 142 ~~l~--------~~~l~~li~~a~~lGl~~lvevh-----------~~~---E~~~A~~~gadiIgin~r 189 (260)
T PRK00278 142 AALD--------DEQLKELLDYAHSLGLDVLVEVH-----------DEE---ELERALKLGAPLIGINNR 189 (260)
T ss_pred ccCC--------HHHHHHHHHHHHHcCCeEEEEeC-----------CHH---HHHHHHHcCCCEEEECCC
Confidence 6654 23457789999999999988 65 233 445567779999998753
No 114
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=84.38 E-value=26 Score=35.42 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=68.6
Q ss_pred HHHHHHHhhhcCCcEEEEecC--C-CH--------HHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-----
Q 014746 209 KEVISTWGARNNIDFLSLSHT--R-GA--------EDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE----- 272 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV--~-sa--------edv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~----- 272 (419)
..++.+.+.+.|+|+|-+.+- . ++ +.+.++.+.+.+. .+++|++|+- + .+.++.++++.
T Consensus 114 ~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~---~~iPv~vKl~-p-~~~~~~~~a~~l~~~G 188 (325)
T cd04739 114 WVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA---VTIPVAVKLS-P-FFSALAHMAKQLDAAG 188 (325)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc---cCCCEEEEcC-C-CccCHHHHHHHHHHcC
Confidence 344434556678999876552 1 11 1122333333222 3578999984 3 24456666654
Q ss_pred CcEEEE-eCCCccCCCC--------------chhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHH
Q 014746 273 ADGIIL-ARGNLGVDLP--------------PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANA 336 (419)
Q Consensus 273 sDgImI-argDLg~elg--------------~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~na 336 (419)
+|||.+ .|. .+..+. ....+...+.+-..++...+|+|- ..+. -..|+..+
T Consensus 189 adgi~~~nt~-~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~------------s~~Da~e~ 255 (325)
T cd04739 189 ADGLVLFNRF-YQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVH------------DAEDVVKY 255 (325)
T ss_pred CCeEEEEcCc-CCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCC------------CHHHHHHH
Confidence 488866 332 111111 112334444444555556899887 5533 35688999
Q ss_pred HHcCCceEEec
Q 014746 337 VLDGSDAILLG 347 (419)
Q Consensus 337 v~~G~D~vmLs 347 (419)
+..|||+|++.
T Consensus 256 l~aGA~~Vqv~ 266 (325)
T cd04739 256 LLAGADVVMTT 266 (325)
T ss_pred HHcCCCeeEEe
Confidence 99999999998
No 115
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=84.05 E-value=39 Score=32.01 Aligned_cols=159 Identities=17% Similarity=0.236 Sum_probs=96.5
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEe-cCCCHHHHHHHHHHHHhcCCCCCceEEEEec-CHHhHhh-HHHHHhh-CcEE--E
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLS-HTRGAEDVRHARDFLSQLGDLGQTQIFAKIE-NTEGLTH-FDEILHE-ADGI--I 277 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~ls-fV~saedv~~v~~~l~~~~~~~~~~IiaKIE-t~~gv~n-l~eI~~~-sDgI--m 277 (419)
++..++..+.+...+.|+|.|=+. ..-+.++...++.+..... . ..+.+..- ....++. ++.+... .|.+ +
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~--~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALP--N-ARLQALCRANEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHH--S-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhc--c-cccceeeeehHHHHHHHHHhhHhccCCEEEec
Confidence 466666666556677899999988 4566777777776655433 2 33333222 2233333 2323223 3544 4
Q ss_pred EeCCCccCCC--C--chhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHH-cCCceEEeccccc
Q 014746 278 LARGNLGVDL--P--PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILLGAETL 351 (419)
Q Consensus 278 IargDLg~el--g--~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~-~G~D~vmLs~ETa 351 (419)
+.-.|+-... + .+.......+++..+++.|..+.+ .. ...+.+.+++.+++..+. .|+|.+.|. +|.
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~ 160 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAGADIIYLA-DTV 160 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETT
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcCCeEEEee-Ccc
Confidence 4555532221 1 234455557789999999999977 43 334666788888886665 499999997 888
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q 014746 352 RGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 352 ~G~yP~eaV~~~~~I~~~aE~ 372 (419)
=.-.|.+.-+.++.+.+..-.
T Consensus 161 G~~~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 161 GIMTPEDVAELVRALREALPD 181 (237)
T ss_dssp S-S-HHHHHHHHHHHHHHSTT
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 888898887777777766553
No 116
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=83.63 E-value=33 Score=30.82 Aligned_cols=124 Identities=19% Similarity=0.116 Sum_probs=69.3
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCC-CceEEEEecC-------HHhHhhHHHHHhh-CcEEEEe
Q 014746 209 KEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLG-QTQIFAKIEN-------TEGLTHFDEILHE-ADGIILA 279 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~-~~~IiaKIEt-------~~gv~nl~eI~~~-sDgImIa 279 (419)
.+.+.++.++.|+|+|.+.- +-++.+++.. . . ++.+++++=. .+.++.++.-.+. +|++++.
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g----~~i~~~~~~~---~--~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~ 85 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP----GYVRLAADAL---A--GSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVV 85 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH----HHHHHHHHHh---C--CCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 44444577889999999885 4444444433 2 3 6889999855 4466666666665 6999984
Q ss_pred CC-CccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHH-HHHcCCceEEec
Q 014746 280 RG-NLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLG 347 (419)
Q Consensus 280 rg-DLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~n-av~~G~D~vmLs 347 (419)
.. ....+-..+.+...-+++..+| ..++|+++...-..+ .+-.++...++ +...|+|++=.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~-----~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 86 INIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILETRGL-----KTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred ccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEECCCC-----CCHHHHHHHHHHHHHhCCCEEEeC
Confidence 32 1111101233444445555555 569999872211111 12334443332 235699998655
No 117
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=83.57 E-value=29 Score=38.18 Aligned_cols=147 Identities=11% Similarity=0.059 Sum_probs=91.6
Q ss_pred HhhhcCCcEEEEecCCCHHHHH---HHHHHHHhcCCCCCceEEEEec--CHHhHhhHHHHHhhCcEEEEeCCCccCC---
Q 014746 215 WGARNNIDFLSLSHTRGAEDVR---HARDFLSQLGDLGQTQIFAKIE--NTEGLTHFDEILHEADGIILARGNLGVD--- 286 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~---~v~~~l~~~~~~~~~~IiaKIE--t~~gv~nl~eI~~~sDgImIargDLg~e--- 286 (419)
...+.|+|.|-+. |.+.++++ .+++.+.+.| ..++++|-|- -..|+..+ +.+|.|=|-||.++-.
T Consensus 49 ~l~~aGceiVRvt-v~~~~~a~~l~~I~~~l~~~G--~~iPLVADIHF~~~~A~~a~----~~v~kiRINPGN~~~~~k~ 121 (611)
T PRK02048 49 RIIDAGGEYVRLT-TQGVREAENLMNINIGLRSQG--YMVPLVADVHFNPKVADVAA----QYAEKVRINPGNYVDPGRT 121 (611)
T ss_pred HHHHcCCCEEEEc-CCCHHHHHhHHHHHHHHhhcC--CCCCEEEecCCCcHHHHHHH----HhhCCEEECCCcCCCcccc
Confidence 3467899997765 45555554 5555555556 6799999883 33343322 2389999999999774
Q ss_pred C------------CchhHHHHHHHHHHHHHHcCCcEEE-E--cccccccc-CCCcchh-hH----hHHHHHHHcCCceEE
Q 014746 287 L------------PPEKVFLFQKAALYKCNMAGKPAVV-T--RVVDSMTD-NLRPTRA-EA----TDVANAVLDGSDAIL 345 (419)
Q Consensus 287 l------------g~e~v~~~qk~Ii~a~~~~gkpvi~-T--qmLeSM~~-~~~Ptra-Ev----~Dv~nav~~G~D~vm 345 (419)
. .++++..--+.++.+|+++|+|+=+ + .=|+.=+. .--+|.. -+ .-+--+-..|.+=+.
T Consensus 122 f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~f~div 201 (611)
T PRK02048 122 FKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYGDTPEGMVESCMEFLRICVEEHFTDVV 201 (611)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEE
Confidence 1 1134445556799999999999844 3 32322111 1112322 11 222244567889999
Q ss_pred ecccccCCCCHHHHHHHHHHHHH
Q 014746 346 LGAETLRGLYPVETISIVGKICA 368 (419)
Q Consensus 346 Ls~ETa~G~yP~eaV~~~~~I~~ 368 (419)
+|-=++.-..+++|.+.+..-+.
T Consensus 202 iS~KsS~~~~~V~AyRlLa~~l~ 224 (611)
T PRK02048 202 ISIKASNTVVMVRTVRLLVAVME 224 (611)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHH
Confidence 99888887777777777766554
No 118
>PRK09389 (R)-citramalate synthase; Provisional
Probab=83.37 E-value=51 Score=35.45 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=99.4
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEec-CCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcE--EEEe
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSH-TRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADG--IILA 279 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsf-V~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDg--ImIa 279 (419)
+|..++..|.+...+.|+|.|=+.| +.++.|.+.++.+.. .+ .+..|.+..-+. .+.++..+++ .|. ++++
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~-~~--~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~ 95 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTD-EG--LNAEICSFARAV--KVDIDAALECDVDSVHLVVP 95 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHh-cC--CCcEEEeecccC--HHHHHHHHhCCcCEEEEEEc
Confidence 4666666666566789999997754 567888888776654 34 346666666553 2234444443 354 4444
Q ss_pred CCCccCCC----CchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHH-HcCCceEEecccccCC
Q 014746 280 RGNLGVDL----PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAV-LDGSDAILLGAETLRG 353 (419)
Q Consensus 280 rgDLg~el----g~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav-~~G~D~vmLs~ETa~G 353 (419)
-.|+-.+. ..++....-...++.|+.+|..+.+ .+ ...+.+.+.+.+++.++ ..|+|.+.|. +|.=.
T Consensus 96 ~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e------d~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DTvG~ 168 (488)
T PRK09389 96 TSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE------DASRADLDFLKELYKAGIEAGADRICFC-DTVGI 168 (488)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe------eCCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCC
Confidence 55553322 2244444556678899999988776 32 34455566666666554 5599999997 88889
Q ss_pred CCHHHHHHHHHHHHHH
Q 014746 354 LYPVETISIVGKICAE 369 (419)
Q Consensus 354 ~yP~eaV~~~~~I~~~ 369 (419)
-.|.+.-++.+.+.+.
T Consensus 169 ~~P~~~~~lv~~l~~~ 184 (488)
T PRK09389 169 LTPEKTYELFKRLSEL 184 (488)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999998887777554
No 119
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=83.24 E-value=60 Score=33.55 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=118.6
Q ss_pred hhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEe--cCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHH
Q 014746 217 ARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKI--ENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFL 294 (419)
Q Consensus 217 l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKI--Et~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~ 294 (419)
.+.|+|.|-+. |.+.++++.++.+-+. ..++++|-| .-..|++. +-.-+|++=|-||.++ ....
T Consensus 52 ~~aGceiVRva-v~~~~~a~al~~I~~~----~~iPlvADIHFd~~lAl~a---~~~G~~~iRINPGNig------~~~~ 117 (360)
T PRK00366 52 ARAGCEIVRVA-VPDMEAAAALPEIKKQ----LPVPLVADIHFDYRLALAA---AEAGADALRINPGNIG------KRDE 117 (360)
T ss_pred HHcCCCEEEEc-cCCHHHHHhHHHHHHc----CCCCEEEecCCCHHHHHHH---HHhCCCEEEECCCCCC------chHH
Confidence 56899999988 7888888888877654 358899988 34444433 3334799999999983 3456
Q ss_pred HHHHHHHHHHHcCCcE--EE-EccccccccC--CCcchh-hH----hHHHHHHHcCCceEEecccccCCCCHHHHHHHHH
Q 014746 295 FQKAALYKCNMAGKPA--VV-TRVVDSMTDN--LRPTRA-EA----TDVANAVLDGSDAILLGAETLRGLYPVETISIVG 364 (419)
Q Consensus 295 ~qk~Ii~a~~~~gkpv--i~-TqmLeSM~~~--~~Ptra-Ev----~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~ 364 (419)
--+.++.+|+++|+|. ++ ..=|+.-+.. ..||.. -+ ..+.-+-..|.+=+.+|- +-..|.++|+.-+
T Consensus 118 ~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~---KsS~v~~~i~ayr 194 (360)
T PRK00366 118 RVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISV---KASDVQDLIAAYR 194 (360)
T ss_pred HHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE---EcCCHHHHHHHHH
Confidence 6688999999999997 44 5444433332 234432 22 223344557888899984 4445666666655
Q ss_pred HHHHHHhc--------------------------------------CCcChHHHHHHHHHHHHHCCCCCCCCEEEEEeec
Q 014746 365 KICAEAKT--------------------------------------TNATSESALKVALDYGKAHGVIKSHDRVVICQKV 406 (419)
Q Consensus 365 ~I~~~aE~--------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~ 406 (419)
.+.+...- -..++..-+..|.++++..|+-+.|-.|+...|-
T Consensus 195 lla~~~dyPLHlGvTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~P~~EV~va~~IL~slglr~~g~~IisCPgC 274 (360)
T PRK00366 195 LLAKRCDYPLHLGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTADPVEEVKVGQEILQSLGLRSRGPEVISCPTC 274 (360)
T ss_pred HHHhcCCCCceecccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHHHcCCccCCCeEEECCCC
Confidence 55544433 1147788899999999999999899888876665
No 120
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=83.15 E-value=5.7 Score=37.84 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=47.7
Q ss_pred CCccCHHH-HHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEE----EecCHH-hHhhHHHHHhh-CcEE
Q 014746 204 LTDKDKEV-ISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFA----KIENTE-GLTHFDEILHE-ADGI 276 (419)
Q Consensus 204 lte~D~~d-i~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~Iia----KIEt~~-gv~nl~eI~~~-sDgI 276 (419)
+++...+. .+ .+.+.|+|||.++|..+.+.++++.+ . ..+++++ ++.|.+ .++|+.+..+. ++|+
T Consensus 140 ~~~~~i~~~~~-~a~~~GaD~Ik~~~~~~~~~~~~i~~---~----~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 140 KDPDLIAYAAR-IGAELGADIVKTKYTGDAESFKEVVE---G----CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred cCHHHHHHHHH-HHHHHCCCEEEecCCCCHHHHHHHHh---c----CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 45444444 33 57889999999998765555444443 2 1233433 223332 67888998887 7999
Q ss_pred EEeCCCccCC
Q 014746 277 ILARGNLGVD 286 (419)
Q Consensus 277 mIargDLg~e 286 (419)
.+||.=+..+
T Consensus 212 ~vg~~i~~~~ 221 (235)
T cd00958 212 AVGRNIFQRP 221 (235)
T ss_pred EechhhhcCC
Confidence 9998766444
No 121
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.98 E-value=9.3 Score=36.29 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=62.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCC--------ccCCCCch--hHHHHHH
Q 014746 228 HTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGN--------LGVDLPPE--KVFLFQK 297 (419)
Q Consensus 228 fV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargD--------Lg~elg~e--~v~~~qk 297 (419)
...++++...+.+.+-+.|. + .+=.-.-|+.+++.++++.+..+.++||-|= ..++.|.+ --|....
T Consensus 11 r~~~~~~a~~ia~al~~gGi--~-~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~ 87 (201)
T PRK06015 11 LIDDVEHAVPLARALAAGGL--P-AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQ 87 (201)
T ss_pred EcCCHHHHHHHHHHHHHCCC--C-EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCH
Confidence 34566666666666655542 1 2223335666776666666555556666551 11111110 1244557
Q ss_pred HHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEecc
Q 014746 298 AALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (419)
Q Consensus 298 ~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ 348 (419)
.+++.|+++|+|++= .. .=.+++..|...|+|.+=+--
T Consensus 88 ~vi~~a~~~~i~~iP----------G~---~TptEi~~A~~~Ga~~vK~FP 125 (201)
T PRK06015 88 ELLAAANDSDVPLLP----------GA---ATPSEVMALREEGYTVLKFFP 125 (201)
T ss_pred HHHHHHHHcCCCEeC----------CC---CCHHHHHHHHHCCCCEEEECC
Confidence 899999999999873 12 223566788888999988853
No 122
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=82.85 E-value=42 Score=31.47 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=72.3
Q ss_pred HHHHHhhhcCCcEEEEecCCC-HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCC
Q 014746 211 VISTWGARNNIDFLSLSHTRG-AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLP 288 (419)
Q Consensus 211 di~~~~l~~g~d~I~lsfV~s-aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg 288 (419)
.+. .+.+.|+|+|.+.-..- .++++++.+.....+ +..++-+-|.+- +.++.+. +|.+.+..-|.... +
T Consensus 86 ~v~-~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g----~~~~v~v~~~~e---~~~~~~~g~~~i~~t~~~~~~~-~ 156 (217)
T cd00331 86 QIY-EARAAGADAVLLIVAALDDEQLKELYELARELG----MEVLVEVHDEEE---LERALALGAKIIGINNRDLKTF-E 156 (217)
T ss_pred HHH-HHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC----CeEEEEECCHHH---HHHHHHcCCCEEEEeCCCcccc-C
Confidence 354 56899999998543222 255555554444333 444555544443 4444444 58888875554322 2
Q ss_pred chhHHHHHHHHHHHHHH--cCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHH
Q 014746 289 PEKVFLFQKAALYKCNM--AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETIS 361 (419)
Q Consensus 289 ~e~v~~~qk~Ii~a~~~--~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~ 361 (419)
. .+ ..+.+.++. .++|++. .. .=+. .|+..+...|+|++++..--.....|.++++
T Consensus 157 ~-~~----~~~~~l~~~~~~~~pvia~gG---------I~s~---edi~~~~~~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 157 V-DL----NTTERLAPLIPKDVILVSESG---------ISTP---EDVKRLAEAGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred c-CH----HHHHHHHHhCCCCCEEEEEcC---------CCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 1 12 222333333 4688887 54 2233 4556666679999999877667777877775
No 123
>PRK08005 epimerase; Validated
Probab=82.67 E-value=46 Score=31.80 Aligned_cols=143 Identities=6% Similarity=0.043 Sum_probs=86.7
Q ss_pred eecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEE
Q 014746 198 RIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGII 277 (419)
Q Consensus 198 ~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgIm 277 (419)
+++.--+.+.=...+..+ .++|+|.|.+. +++..+..++-+.+++.| ....|-.+-+| -++.++.++...|.|+
T Consensus 60 ~~DvHLMv~~P~~~i~~~-~~~gad~It~H-~Ea~~~~~~~l~~Ik~~G--~k~GlAlnP~T--p~~~i~~~l~~vD~Vl 133 (210)
T PRK08005 60 PLSFHLMVSSPQRWLPWL-AAIRPGWIFIH-AESVQNPSEILADIRAIG--AKAGLALNPAT--PLLPYRYLALQLDALM 133 (210)
T ss_pred CeEEEeccCCHHHHHHHH-HHhCCCEEEEc-ccCccCHHHHHHHHHHcC--CcEEEEECCCC--CHHHHHHHHHhcCEEE
Confidence 344444554444556534 78999988865 576677877778888888 67778888888 4667889999999998
Q ss_pred EeCCCccCCCCc---hhHHHHHHHHHHHHHHcC-CcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccC
Q 014746 278 LARGNLGVDLPP---EKVFLFQKAALYKCNMAG-KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLR 352 (419)
Q Consensus 278 IargDLg~elg~---e~v~~~qk~Ii~a~~~~g-kpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~ 352 (419)
+ ++++-|+ .-++..-++|-+..+... ...-+ .. -+..- +...+..|+|.+++.+---.
T Consensus 134 v----MsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGG----------I~~~~---i~~l~~aGad~~V~GsaiF~ 196 (210)
T PRK08005 134 I----MTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGG----------ITLRA---ARLLAAAGAQHLVIGRALFT 196 (210)
T ss_pred E----EEecCCCccceecHHHHHHHHHHHHhcccCCEEEECC----------CCHHH---HHHHHHCCCCEEEEChHhhC
Confidence 8 3444443 234444455544333221 22322 22 12222 23456669999888643322
Q ss_pred CCCHHHHHHHH
Q 014746 353 GLYPVETISIV 363 (419)
Q Consensus 353 G~yP~eaV~~~ 363 (419)
.+-|.++++.|
T Consensus 197 ~~d~~~~~~~~ 207 (210)
T PRK08005 197 TANYDVTLSQF 207 (210)
T ss_pred CCCHHHHHHHH
Confidence 34467776655
No 124
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=82.55 E-value=44 Score=31.48 Aligned_cols=129 Identities=12% Similarity=0.139 Sum_probs=67.7
Q ss_pred CHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEec--------------C-HHhHhhHHHHHhh
Q 014746 208 DKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIE--------------N-TEGLTHFDEILHE 272 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIE--------------t-~~gv~nl~eI~~~ 272 (419)
+.++++ ..++.|+|.|++..- ..++...++++....+ .+ .++.-|. + ...++.+..+.+.
T Consensus 84 ~~e~~~-~~~~~Gad~vvigs~-~l~dp~~~~~i~~~~g--~~-~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T cd04732 84 SLEDIE-RLLDLGVSRVIIGTA-AVKNPELVKELLKEYG--GE-RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEEL 158 (234)
T ss_pred CHHHHH-HHHHcCCCEEEECch-HHhChHHHHHHHHHcC--Cc-eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHc
Confidence 456665 457899999887643 2344444555554443 21 1222111 1 1222333334333
Q ss_pred -CcEEEEe-CCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEeccc
Q 014746 273 -ADGIILA-RGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 273 -sDgImIa-rgDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~E 349 (419)
+|++++- +.--+..-| ..+ +.+-..++....|++. .. .-+.+ |+..+...|+|++|+..-
T Consensus 159 ga~~iii~~~~~~g~~~g-~~~----~~i~~i~~~~~ipvi~~GG---------i~~~~---di~~~~~~Ga~gv~vg~~ 221 (234)
T cd04732 159 GVKAIIYTDISRDGTLSG-PNF----ELYKELAAATGIPVIASGG---------VSSLD---DIKALKELGVAGVIVGKA 221 (234)
T ss_pred CCCEEEEEeecCCCccCC-CCH----HHHHHHHHhcCCCEEEecC---------CCCHH---HHHHHHHCCCCEEEEeHH
Confidence 6888774 222222222 121 2233334556899997 54 34444 445555569999999877
Q ss_pred ccCCCCHHH
Q 014746 350 TLRGLYPVE 358 (419)
Q Consensus 350 Ta~G~yP~e 358 (419)
--.|+++.+
T Consensus 222 ~~~~~~~~~ 230 (234)
T cd04732 222 LYEGKITLE 230 (234)
T ss_pred HHcCCCCHH
Confidence 777776644
No 125
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=82.25 E-value=50 Score=31.97 Aligned_cols=145 Identities=12% Similarity=0.055 Sum_probs=85.8
Q ss_pred ecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCC--CceEEEEecCHHhHhhHHHHHhhCcEE
Q 014746 199 IDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLG--QTQIFAKIENTEGLTHFDEILHEADGI 276 (419)
Q Consensus 199 ~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~--~~~IiaKIEt~~gv~nl~eI~~~sDgI 276 (419)
++.--+.+.=.+.+..+ .++|+|.|.+. +++..++.+.-+.+++.| . ...+.-+=+| -++.++.++...|.|
T Consensus 71 ~DvHLMv~~P~~~i~~~-~~aGad~It~H-~Ea~~~~~~~l~~Ik~~g--~~~kaGlalnP~T--p~~~i~~~l~~vD~V 144 (228)
T PRK08091 71 KDVHLMVRDQFEVAKAC-VAAGADIVTLQ-VEQTHDLALTIEWLAKQK--TTVLIGLCLCPET--PISLLEPYLDQIDLI 144 (228)
T ss_pred EEEEeccCCHHHHHHHH-HHhCCCEEEEc-ccCcccHHHHHHHHHHCC--CCceEEEEECCCC--CHHHHHHHHhhcCEE
Confidence 44444554444556534 88999988876 576677877778888887 5 6778888888 468899999999999
Q ss_pred EEeCCCccCCCCc---hhHHHHHHHHHH---HHHHcCCcE--EE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 277 ILARGNLGVDLPP---EKVFLFQKAALY---KCNMAGKPA--VV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 277 mIargDLg~elg~---e~v~~~qk~Ii~---a~~~~gkpv--i~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
++= +++=|+ .-.+..-++|-+ .-.++|.-+ -+ .. -+.. -+......|+|.+++.
T Consensus 145 LiM----tV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGG----------I~~~---ti~~l~~aGaD~~V~G 207 (228)
T PRK08091 145 QIL----TLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGS----------MTLE---LASYLKQHQIDWVVSG 207 (228)
T ss_pred EEE----EECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECC----------CCHH---HHHHHHHCCCCEEEEC
Confidence 882 333333 112222222222 122344332 22 21 1222 2335566799998886
Q ss_pred ccccCCCCHHHHHHHHHHH
Q 014746 348 AETLRGLYPVETISIVGKI 366 (419)
Q Consensus 348 ~ETa~G~yP~eaV~~~~~I 366 (419)
+---.-.-|.++++.+++-
T Consensus 208 SalF~~~d~~~~i~~l~~~ 226 (228)
T PRK08091 208 SALFSQGELKTTLKEWKSS 226 (228)
T ss_pred hhhhCCCCHHHHHHHHHHh
Confidence 3321123477888777653
No 126
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=82.17 E-value=2.8 Score=42.54 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=40.2
Q ss_pred EEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 32 IVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 32 Ii~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
+.+.+|+..+..+.++.++++|++++=+|++||+.+.+.++++.+|+.
T Consensus 85 v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 85 VGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred EEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 445567655667889999999999999999999998888888888874
No 127
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=82.17 E-value=42 Score=31.03 Aligned_cols=135 Identities=12% Similarity=0.112 Sum_probs=75.9
Q ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCH-HhHhhHHHHHh-hCcEEEEeCCCccCCCC
Q 014746 211 VISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENT-EGLTHFDEILH-EADGIILARGNLGVDLP 288 (419)
Q Consensus 211 di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~-~gv~nl~eI~~-~sDgImIargDLg~elg 288 (419)
.+. .+.++|+|+|.+++..+...+.++.+.+.+.| +++++-+-++ .-++.+..... -+|.+-+.+|-=+...+
T Consensus 68 ~~~-~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g----~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~ 142 (206)
T TIGR03128 68 EAE-QAFAAGADIVTVLGVADDATIKGAVKAAKKHG----KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKG 142 (206)
T ss_pred HHH-HHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC----CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCC
Confidence 454 45899999999888776667788888877655 5565544232 12233444444 47888876652222222
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHH
Q 014746 289 PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKI 366 (419)
Q Consensus 289 ~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I 366 (419)
...+. .+-+..+....+.+. +. .. +.. .+..+...|+|++.+.+.--.-+-|.++++.++++
T Consensus 143 ~~~~~----~i~~l~~~~~~~~i~v~G--------GI-~~~---n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 143 QNPFE----DLQTILKLVKEARVAVAG--------GI-NLD---TIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred CCCHH----HHHHHHHhcCCCcEEEEC--------Cc-CHH---HHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 11221 122222222234343 22 12 333 34466677999999865544445688888887764
No 128
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=81.33 E-value=36 Score=32.56 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=75.6
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEE--ecCHHhHhhHHHHH-hhCcEEEEeCCCccCCCCchh
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAK--IENTEGLTHFDEIL-HEADGIILARGNLGVDLPPEK 291 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaK--IEt~~gv~nl~eI~-~~sDgImIargDLg~elg~e~ 291 (419)
.++..|+|+|-++ ++-.++.++|+.+. .. .+|.- .-+.+. +.+-. .-+|.+.+|+- +. ......
T Consensus 82 lA~~~~adGVHLg--~~d~~~~~~r~~~~-----~~-~iiG~s~~~s~~~---a~~A~~~gaDYv~~Gpv-~t-~tK~~~ 148 (221)
T PRK06512 82 IAGRVKADGLHIE--GNLAALAEAIEKHA-----PK-MIVGFGNLRDRHG---AMEIGELRPDYLFFGKL-GA-DNKPEA 148 (221)
T ss_pred HHHHhCCCEEEEC--ccccCHHHHHHhcC-----CC-CEEEecCCCCHHH---HHHhhhcCCCEEEECCC-CC-CCCCCC
Confidence 3468889999888 33234666666552 11 23322 222322 22211 23699999986 32 111111
Q ss_pred HHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHH
Q 014746 292 VFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 292 v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~ 369 (419)
-|.-...+-+.|+...+||+- ..+ + ..++......|+|++-..+.--.-..|.++++-+.+++++
T Consensus 149 ~p~gl~~l~~~~~~~~iPvvAIGGI----------~---~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 149 HPRNLSLAEWWAEMIEIPCIVQAGS----------D---LASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred CCCChHHHHHHHHhCCCCEEEEeCC----------C---HHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence 111111222456777999987 552 2 2345556667999999988877788899999988888764
No 129
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=81.12 E-value=47 Score=36.09 Aligned_cols=161 Identities=16% Similarity=0.111 Sum_probs=102.7
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEec-CCCHHHHHHHHHHHHhcCCCCCceEEEEec-CHHhH-----hhHHHHHhh-CcE
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSH-TRGAEDVRHARDFLSQLGDLGQTQIFAKIE-NTEGL-----THFDEILHE-ADG 275 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsf-V~saedv~~v~~~l~~~~~~~~~~IiaKIE-t~~gv-----~nl~eI~~~-sDg 275 (419)
+|..++..|.+...+.|+|.|=+-| .-|+.|...++.+... +. ++..|.+..= .+..+ ..++..+.+ .+.
T Consensus 20 ~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~-~~-~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~ 97 (526)
T TIGR00977 20 FSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEM-NF-KNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPV 97 (526)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHh-CC-CCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCE
Confidence 4667777776566779999997754 3568888888877643 31 3455655552 22222 123444433 243
Q ss_pred --EEEeCCCccCCC----CchhHHHHHHHHHHHHHHcCCcEEE--EccccccccCCCcchhhHhHHHHH-HHcCCceEEe
Q 014746 276 --IILARGNLGVDL----PPEKVFLFQKAALYKCNMAGKPAVV--TRVVDSMTDNLRPTRAEATDVANA-VLDGSDAILL 346 (419)
Q Consensus 276 --ImIargDLg~el----g~e~v~~~qk~Ii~a~~~~gkpvi~--TqmLeSM~~~~~PtraEv~Dv~na-v~~G~D~vmL 346 (419)
+++.--|+-.+. ..++........+..++.+|..|.. ++..+.. +-+...+.+++.+ ...|+|.+.|
T Consensus 98 v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~~~~~a~~aGad~i~i 173 (526)
T TIGR00977 98 VTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALATLATAQQAGADWLVL 173 (526)
T ss_pred EEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHHHHHHHHhCCCCeEEE
Confidence 344444544432 2256666667889999999998865 4433321 2234555666655 4569999999
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHh
Q 014746 347 GAETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 347 s~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
. +|.=+..|.+.-+++..+.+...
T Consensus 174 ~-DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 174 C-DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred e-cCCCCcCHHHHHHHHHHHHHhCC
Confidence 8 99999999999999998877644
No 130
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=81.08 E-value=46 Score=34.77 Aligned_cols=149 Identities=11% Similarity=0.088 Sum_probs=83.5
Q ss_pred CccCHHHHHHHhhhcCCcEEEEec----C-----------CCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHH
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSH----T-----------RGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEI 269 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsf----V-----------~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI 269 (419)
++.|..++.+..-+.|+|+|-+.+ . ++++-+.++-+.+.+. .++++++||=- -+.++.++
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~---~~iPv~vKLsP--n~t~i~~i 199 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK---ATVPVWAKMTP--NITDITQP 199 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh---hcCceEEEeCC--ChhhHHHH
Confidence 556666655455677899988765 2 4556666665555443 35789999962 23345555
Q ss_pred Hhh-----CcEEEE-----eCCCc--cC-----------CCC-c---hhHHHHHHHHHHHHHHc------CCcEEE-Ecc
Q 014746 270 LHE-----ADGIIL-----ARGNL--GV-----------DLP-P---EKVFLFQKAALYKCNMA------GKPAVV-TRV 315 (419)
Q Consensus 270 ~~~-----sDgImI-----argDL--g~-----------elg-~---e~v~~~qk~Ii~a~~~~------gkpvi~-Tqm 315 (419)
+++ +|||.+ .+-++ -. ..| + .--|.+...+-+.+++. +.|++- ..+
T Consensus 200 a~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI 279 (385)
T PLN02495 200 ARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGV 279 (385)
T ss_pred HHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCC
Confidence 553 488865 12111 10 111 1 11233333332333332 477776 553
Q ss_pred ccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCC-HHHHHHHHHHHHHHHhc
Q 014746 316 VDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLY-PVETISIVGKICAEAKT 372 (419)
Q Consensus 316 LeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~y-P~eaV~~~~~I~~~aE~ 372 (419)
- -..|++.+++.|||+|.+. |+.=.| |--.-++.+.+.+-.++
T Consensus 280 ~------------s~~Da~e~i~aGAs~VQv~--Ta~~~~Gp~vi~~i~~~L~~~m~~ 323 (385)
T PLN02495 280 E------------TGGDAAEFILLGADTVQVC--TGVMMHGYPLVKNLCAELQDFMKK 323 (385)
T ss_pred C------------CHHHHHHHHHhCCCceeEe--eeeeecCcHHHHHHHHHHHHHHHH
Confidence 3 3578999999999999997 555556 54333444444444443
No 131
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=80.86 E-value=30 Score=35.57 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=83.0
Q ss_pred CccCHHHHHHHhhhcCCcEEEEecC----------CCHHHHHHHHHHHHhcCCCCCceEEEEe----cCHH-hHhhHHHH
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSHT----------RGAEDVRHARDFLSQLGDLGQTQIFAKI----ENTE-GLTHFDEI 269 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsfV----------~saedv~~v~~~l~~~~~~~~~~IiaKI----Et~~-gv~nl~eI 269 (419)
+..+.+++. .+++.|+|.|-+.+- -+-+|+++..+++.++| ....+.... +..+ ..+-++.+
T Consensus 12 pag~l~~l~-~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~g--kk~~V~~N~~~~~~~~~~~~~~l~~l 88 (347)
T COG0826 12 PAGNLEDLK-AAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAG--KKVYVAVNTLLHNDELETLERYLDRL 88 (347)
T ss_pred CCCCHHHHH-HHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcC--CeEEEEeccccccchhhHHHHHHHHH
Confidence 345778886 889999999988844 67789999999999888 443332221 1111 23334444
Q ss_pred Hhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcC--CcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEE
Q 014746 270 LHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAG--KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAIL 345 (419)
Q Consensus 270 ~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~g--kpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vm 345 (419)
.+. .|+|+++ |+| ++..|++.+ .|+.+ ||+- +.| + ..+--+-..|+.-++
T Consensus 89 ~e~GvDaviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~---v~N-----~--~~~~f~~~~G~~rvV 142 (347)
T COG0826 89 VELGVDAVIVA--DPG--------------LIMLARERGPDLPIHVSTQAN---VTN-----A--ETAKFWKELGAKRVV 142 (347)
T ss_pred HHcCCCEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEe---cCC-----H--HHHHHHHHcCCEEEE
Confidence 444 5999984 543 466788888 99999 9943 222 1 112233345999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHHHH
Q 014746 346 LGAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 346 Ls~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
|+.|.+ ...+.+|.++.
T Consensus 143 l~rEls--------~~ei~~i~~~~ 159 (347)
T COG0826 143 LPRELS--------LEEIKEIKEQT 159 (347)
T ss_pred eCccCC--------HHHHHHHHHhC
Confidence 998743 44455555554
No 132
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=80.39 E-value=46 Score=34.27 Aligned_cols=168 Identities=12% Similarity=0.060 Sum_probs=97.0
Q ss_pred CcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEE-ecCCCHH------HHHHHHHHHHhcCCCCCceEEEEecCHH
Q 014746 189 LYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSL-SHTRGAE------DVRHARDFLSQLGDLGQTQIFAKIENTE 261 (419)
Q Consensus 189 ~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~l-sfV~sae------dv~~v~~~l~~~~~~~~~~IiaKIEt~~ 261 (419)
|-|..-|+..+ |..++..|.....+.|++.|=+ ||| ++. |-.++.+.+..... .....+ +=+.+
T Consensus 55 RDG~Q~~g~~~-----s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~~~-~~~~~l--~~n~~ 125 (347)
T PLN02746 55 RDGLQNEKNIV-----PTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNLEG-ARFPVL--TPNLK 125 (347)
T ss_pred CccCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhccC-CceeEE--cCCHH
Confidence 44555556543 4555555555667799999865 566 442 33333333433210 222233 33556
Q ss_pred hHhhHHHHHhhCcEE--EEeCCCccCC----CCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhh---HhH
Q 014746 262 GLTHFDEILHEADGI--ILARGNLGVD----LPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAE---ATD 332 (419)
Q Consensus 262 gv~nl~eI~~~sDgI--mIargDLg~e----lg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraE---v~D 332 (419)
+++..-+- -.|.| ++.-.|+-.. ...++.....++++..|+.+|+.+..+ +.....+|.-+|.+ +.+
T Consensus 126 die~A~~~--g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~--is~~fg~p~~~r~~~~~l~~ 201 (347)
T PLN02746 126 GFEAAIAA--GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY--VSCVVGCPIEGPVPPSKVAY 201 (347)
T ss_pred HHHHHHHc--CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE--EEeeecCCccCCCCHHHHHH
Confidence 65554321 14543 3333343222 223556666678999999999988530 10112345555544 333
Q ss_pred HH-HHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHH
Q 014746 333 VA-NAVLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 333 v~-nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
++ .+...|+|.+.|. +|.=--.|.+..+++..+.++.
T Consensus 202 ~~~~~~~~Gad~I~l~-DT~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 202 VAKELYDMGCYEISLG-DTIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHHHHHHcCCCEEEec-CCcCCcCHHHHHHHHHHHHHhC
Confidence 33 5777899999997 8888889999999999887654
No 133
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=80.36 E-value=11 Score=38.79 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=83.9
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHH----------------------HHhcCCCCCceEEEEecCHHhHhhH
Q 014746 209 KEVISTWGARNNIDFLSLSHTRGAEDVRHARDF----------------------LSQLGDLGQTQIFAKIENTEGLTHF 266 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~----------------------l~~~~~~~~~~IiaKIEt~~gv~nl 266 (419)
++.+. .|++.|+|+|.++- ..++.++++-+. +...+ ........|.+++-++.+
T Consensus 15 k~~vt-~AlEsGvd~vv~~~-~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~v~i~~~~~~~~a 90 (354)
T PF01959_consen 15 KEVVT-AALESGVDGVVVDD-EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEG--KEVGVYVEITDKEDEEEA 90 (354)
T ss_pred HHHHH-HHHHcCCCEEEECH-hHhhhhhccceEEEEeccccccCCccccchhhhhhhccC--ceEEEEEEECCHHHHHHH
Confidence 66675 88999999999874 222333222110 01112 345578999999999999
Q ss_pred HHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 267 DEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 267 ~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
.+.+...|-+++--.|-. -+|+| .++.+....+.-++. . .-+-+|..-.+.+...|+|+++|
T Consensus 91 ~~~~~~~~~~iv~~~Dw~-iIPlE-------nliA~~~~~~~~i~a-~---------v~~~~eA~~~~~~LE~G~dGVll 152 (354)
T PF01959_consen 91 CELAKRADYVIVEFRDWT-IIPLE-------NLIAALQGSSTKIIA-V---------VADAEEARVALEVLEKGVDGVLL 152 (354)
T ss_pred HHHhccCCeEEEEcCCCc-EecHH-------HHHHHhcCCCceEEE-E---------eCCHHHHHHHHHHHhcCCCeEEE
Confidence 999988887777555532 23444 344444334444443 1 34556777778999999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHHH
Q 014746 347 GAETLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 347 s~ETa~G~yP~eaV~~~~~I~~~ 369 (419)
..+ - ...++-+...+.+
T Consensus 153 ~~~-----d-~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 153 DPD-----D-PAEIKALVALLKE 169 (354)
T ss_pred CCC-----C-HHHHHHHHHHHhh
Confidence 855 2 3455555666665
No 134
>PRK08227 autoinducer 2 aldolase; Validated
Probab=79.68 E-value=7.4 Score=38.48 Aligned_cols=138 Identities=13% Similarity=0.108 Sum_probs=79.5
Q ss_pred HhhhcCCcEEEEe-cCCCHH---HHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCC---
Q 014746 215 WGARNNIDFLSLS-HTRGAE---DVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDL--- 287 (419)
Q Consensus 215 ~~l~~g~d~I~ls-fV~sae---dv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~el--- 287 (419)
-|++.|+|.|.+. |+-+.. .++++.+...+... .++++++....-+.+.|=.+++..+-.+ -.+||+++
T Consensus 102 eAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~-~G~Plla~~prG~~~~~~~~~ia~aaRi---aaELGADiVK~ 177 (264)
T PRK08227 102 DAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLR-YGMPVMAVTAVGKDMVRDARYFSLATRI---AAEMGAQIIKT 177 (264)
T ss_pred HHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHH-hCCcEEEEecCCCCcCchHHHHHHHHHH---HHHHcCCEEec
Confidence 4588999988874 333433 33333333333221 3466777332222233322233221000 02333222
Q ss_pred CchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHH
Q 014746 288 PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKI 366 (419)
Q Consensus 288 g~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I 366 (419)
++.. ...++++.+| ..||++ .. ...+++.-...++.++..|+-++....-.---..|.+.++-++.|
T Consensus 178 ~y~~--~~f~~vv~a~---~vPVviaGG-------~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~I 245 (264)
T PRK08227 178 YYVE--EGFERITAGC---PVPIVIAGG-------KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAV 245 (264)
T ss_pred CCCH--HHHHHHHHcC---CCcEEEeCC-------CCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHH
Confidence 2222 3456666655 689998 44 223556667999999999999999887777778899999988888
Q ss_pred HH
Q 014746 367 CA 368 (419)
Q Consensus 367 ~~ 368 (419)
+-
T Consensus 246 Vh 247 (264)
T PRK08227 246 VH 247 (264)
T ss_pred Hh
Confidence 74
No 135
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=79.43 E-value=59 Score=32.17 Aligned_cols=129 Identities=14% Similarity=0.207 Sum_probs=69.0
Q ss_pred cCHHHHHHHhhhcC-CcEEEEe------------cCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-
Q 014746 207 KDKEVISTWGARNN-IDFLSLS------------HTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE- 272 (419)
Q Consensus 207 ~D~~di~~~~l~~g-~d~I~ls------------fV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~- 272 (419)
.|.....+.+.+.| +|+|=+. +-++++-+.++.+.+.+. .+..|++||=- .++++.++++.
T Consensus 104 ~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl~~--~~~~~~~~a~~l 178 (301)
T PRK07259 104 EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV---VKVPVIVKLTP--NVTDIVEIAKAA 178 (301)
T ss_pred HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh---cCCCEEEEcCC--CchhHHHHHHHH
Confidence 34444333556678 9998552 233455556655555543 25789999851 22344444432
Q ss_pred ----CcEEEE-----eCC-Ccc-------CCCC----chhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhH
Q 014746 273 ----ADGIIL-----ARG-NLG-------VDLP----PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEA 330 (419)
Q Consensus 273 ----sDgImI-----arg-DLg-------~elg----~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv 330 (419)
+|+|.+ ++. |+- ...| ....+...+.+-...++.++|+|. ..+ -| .
T Consensus 179 ~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI---------~~---~ 246 (301)
T PRK07259 179 EEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGI---------SS---A 246 (301)
T ss_pred HHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCC---------CC---H
Confidence 488765 221 221 1111 111222333333344455899987 542 22 3
Q ss_pred hHHHHHHHcCCceEEecccccC
Q 014746 331 TDVANAVLDGSDAILLGAETLR 352 (419)
Q Consensus 331 ~Dv~nav~~G~D~vmLs~ETa~ 352 (419)
.|+..++..|+|+|++..---.
T Consensus 247 ~da~~~l~aGAd~V~igr~ll~ 268 (301)
T PRK07259 247 EDAIEFIMAGASAVQVGTANFY 268 (301)
T ss_pred HHHHHHHHcCCCceeEcHHHhc
Confidence 5667778889999999844333
No 136
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=79.36 E-value=46 Score=32.69 Aligned_cols=90 Identities=17% Similarity=0.161 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 233 EDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 233 edv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+.++.++++.++.| +.+++-+-+++.++-+.+ .+|.+.||-+++.- ..++.++.+.||||++
T Consensus 66 ~gl~~L~~~~~~~G----l~~~Tev~d~~~v~~~~e---~vdilqIgs~~~~n-----------~~LL~~va~tgkPVil 127 (250)
T PRK13397 66 QGIRYLHEVCQEFG----LLSVSEIMSERQLEEAYD---YLDVIQVGARNMQN-----------FEFLKTLSHIDKPILF 127 (250)
T ss_pred HHHHHHHHHHHHcC----CCEEEeeCCHHHHHHHHh---cCCEEEECcccccC-----------HHHHHHHHccCCeEEE
Confidence 34666666665544 778887777776665555 68999999777543 5577778888999998
Q ss_pred -EccccccccCCCcchhhHhHHHHHHH-cCCceEEecc
Q 014746 313 -TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILLGA 348 (419)
Q Consensus 313 -TqmLeSM~~~~~PtraEv~Dv~nav~-~G~D~vmLs~ 348 (419)
|.+ .+|-+|+...+..+. .|..=++|..
T Consensus 128 k~G~--------~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 128 KRGL--------MATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred eCCC--------CCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 431 677889988888877 4665677763
No 137
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.21 E-value=63 Score=31.15 Aligned_cols=144 Identities=11% Similarity=0.072 Sum_probs=87.0
Q ss_pred HHHHHHhhhcCCcEEEEecCC----------CHHHHHHHHHHHHhcCCCCCceEEE-------Ee---c---CHHhHhhH
Q 014746 210 EVISTWGARNNIDFLSLSHTR----------GAEDVRHARDFLSQLGDLGQTQIFA-------KI---E---NTEGLTHF 266 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~lsfV~----------saedv~~v~~~l~~~~~~~~~~Iia-------KI---E---t~~gv~nl 266 (419)
+.+. ++.++|.|+|=+++.. +.+++.++++.+.+.|. .+.-+. -+ + ..++++++
T Consensus 20 e~~~-~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl--~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~ 96 (284)
T PRK13210 20 ERLV-FAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGV--RIPSMCLSGHRRFPFGSRDPATRERALEIM 96 (284)
T ss_pred HHHH-HHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCC--CceEEecccccCcCCCCCCHHHHHHHHHHH
Confidence 3454 7789999999887543 46789999999998772 222111 01 1 12467777
Q ss_pred HHHHhh-----CcEEEEeCCCccCCCC----chhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHH
Q 014746 267 DEILHE-----ADGIILARGNLGVDLP----PEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAV 337 (419)
Q Consensus 267 ~eI~~~-----sDgImIargDLg~elg----~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav 337 (419)
...++. ++.|.+..++...+-. ++++...-+++...|.++|+.+.+ |.|-.+-.++.++..++..++
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l----E~~~~~~~~~~~~~~~l~~~v 172 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV----EIMDTPFMNSISKWKKWDKEI 172 (284)
T ss_pred HHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE----EecCccccCCHHHHHHHHHHc
Confidence 777765 3677665443221111 133334446688888899987776 323334467777788887776
Q ss_pred HcCCceEEecccc----cCCCCHHHHHHH
Q 014746 338 LDGSDAILLGAET----LRGLYPVETISI 362 (419)
Q Consensus 338 ~~G~D~vmLs~ET----a~G~yP~eaV~~ 362 (419)
+.+.+-+.-++ ..|..|.+.++.
T Consensus 173 --~~~~~~~~~D~~h~~~~~~~~~~~l~~ 199 (284)
T PRK13210 173 --DSPWLTVYPDVGNLSAWGNDVWSELKL 199 (284)
T ss_pred --CCCceeEEecCChhhhcCCCHHHHHHH
Confidence 44555554444 236667766653
No 138
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=79.02 E-value=18 Score=39.59 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=90.0
Q ss_pred HhhhcCCcEEEEe--cCCCHHHHHHHHHHHHhcCCCCCceEEEEec--CHHhHhhHHHHHhhCcEEEEeCCCccCC----
Q 014746 215 WGARNNIDFLSLS--HTRGAEDVRHARDFLSQLGDLGQTQIFAKIE--NTEGLTHFDEILHEADGIILARGNLGVD---- 286 (419)
Q Consensus 215 ~~l~~g~d~I~ls--fV~saedv~~v~~~l~~~~~~~~~~IiaKIE--t~~gv~nl~eI~~~sDgImIargDLg~e---- 286 (419)
...+.|+|.|-+. -.+.++.+..+++.|...| ..++++|-|- -..|+..+ +.+|.|=|-||.++-.
T Consensus 53 ~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g--~~iPLVADIHF~~~~A~~a~----~~vdkiRINPGNi~~~~k~F 126 (606)
T PRK00694 53 ALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQG--ISIPLVADIHFFPQAAMHVA----DFVDKVRINPGNYVDKRNMF 126 (606)
T ss_pred HHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccC--CCCCEEeecCCChHHHHHHH----HhcCceEECCcccCCccccc
Confidence 3467899987665 3444455555555666666 6799999883 23333322 2379999999999861
Q ss_pred ----C-------CchhHHHHHHHHHHHHHHcCCcEEE-E--ccccccc-cCCCcchh-hH----hHHHHHHHcCCceEEe
Q 014746 287 ----L-------PPEKVFLFQKAALYKCNMAGKPAVV-T--RVVDSMT-DNLRPTRA-EA----TDVANAVLDGSDAILL 346 (419)
Q Consensus 287 ----l-------g~e~v~~~qk~Ii~a~~~~gkpvi~-T--qmLeSM~-~~~~Ptra-Ev----~Dv~nav~~G~D~vmL 346 (419)
+ .++++..--+.++.+|+++|+|+=+ + .=|+.=+ +.--+|.. -+ .-+.-+-..|.+=+.+
T Consensus 127 ~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~divi 206 (606)
T PRK00694 127 TGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLDYRDVVF 206 (606)
T ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 1 1234555557799999999999844 3 3222211 11112321 11 2222344568888888
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHh
Q 014746 347 GAETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 347 s~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
|- +...|...|+.-+.+.++.+
T Consensus 207 S~---KsSnv~~mi~AyrlLa~~~d 228 (606)
T PRK00694 207 SM---KSSNPKVMVAAYRQLAKDLD 228 (606)
T ss_pred EE---EcCCHHHHHHHHHHHHHHhh
Confidence 74 45557777777777777776
No 139
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=78.80 E-value=71 Score=31.56 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=64.3
Q ss_pred CCcEEEEecC------------CCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-----CcEEEEeC--
Q 014746 220 NIDFLSLSHT------------RGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-----ADGIILAR-- 280 (419)
Q Consensus 220 g~d~I~lsfV------------~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-----sDgImIar-- 280 (419)
++|+|-+.+= ++++.+.++.+.+.+. .+..|++||- ..+++..++++. +|+|.+.-
T Consensus 118 ~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~---~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~ 192 (300)
T TIGR01037 118 YVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK---TDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTL 192 (300)
T ss_pred ccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh---cCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccC
Confidence 3788776432 4566666666666543 2478999995 123344444432 48998731
Q ss_pred -C---Ccc-------CCC----CchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceE
Q 014746 281 -G---NLG-------VDL----PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAI 344 (419)
Q Consensus 281 -g---DLg-------~el----g~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~v 344 (419)
| |+. ... |....+...+.+-+..++.++|+|. ..+. ...|+..++..|+|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~------------s~~da~~~l~~GAd~V 260 (300)
T TIGR01037 193 RGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGIT------------SFEDALEFLMAGASAV 260 (300)
T ss_pred CccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCC------------CHHHHHHHHHcCCCce
Confidence 1 211 111 1112233334444445556899997 5432 2356778888999999
Q ss_pred Eeccc
Q 014746 345 LLGAE 349 (419)
Q Consensus 345 mLs~E 349 (419)
|+...
T Consensus 261 ~igr~ 265 (300)
T TIGR01037 261 QVGTA 265 (300)
T ss_pred eecHH
Confidence 99844
No 140
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=78.54 E-value=4.2 Score=43.98 Aligned_cols=126 Identities=18% Similarity=0.181 Sum_probs=76.1
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhc----CC-CCCceEEEEecCHHhHhhHHHHHhhC-c---EEEEeC----------
Q 014746 220 NIDFLSLSHTRGAEDVRHARDFLSQL----GD-LGQTQIFAKIENTEGLTHFDEILHEA-D---GIILAR---------- 280 (419)
Q Consensus 220 g~d~I~lsfV~saedv~~v~~~l~~~----~~-~~~~~IiaKIEt~~gv~nl~eI~~~s-D---gImIar---------- 280 (419)
+-=|+-+|+.+++++++--.+.+... |. ...+++-..|||..|.-+++||+.+. | |+=-||
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 44588999999999998887766432 22 23588999999999999999999874 2 333333
Q ss_pred ------------CCccCCCCchhHHHHHHHHHHHHHHcCCcEEE---Ecccc--ccccCCCcchhhHhHHHHHHHcCCce
Q 014746 281 ------------GNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV---TRVVD--SMTDNLRPTRAEATDVANAVLDGSDA 343 (419)
Q Consensus 281 ------------gDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~---TqmLe--SM~~~~~PtraEv~Dv~nav~~G~D~ 343 (419)
..++++. +-+....+..+..|++.|...+. .++.- -|..++.--..=..|=-.-+.+|+||
T Consensus 283 ~~~~~~~vlPdR~~v~m~~--pfm~aY~~llv~tch~Rga~a~gGmaa~ip~~~d~~~~~~a~~~v~~dK~rE~~~G~dg 360 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQ--PFMRAYEDLLVRTCHRRGAHAMGGMAAFIPIGKDPWANPDAMAKVRADKEREAKAGFDG 360 (526)
T ss_dssp TCCGCCBB---GGGGGCGS--HHHHHHHHHHHHHHHHTT-HHHTTCTTTSEEEEEEHHBTTCHHHHHHHTHHHHHTT-SE
T ss_pred hhhCCCccccccccccccC--HHHHHHHHHHHHHHhhcCCccccCCccccCCCCChhhhHHHHHHHHHHHHHHHhcCCCc
Confidence 3333322 35667778899999999987653 22110 01111111111112333667899999
Q ss_pred EEec
Q 014746 344 ILLG 347 (419)
Q Consensus 344 vmLs 347 (419)
-+..
T Consensus 361 ~WVa 364 (526)
T PF01274_consen 361 AWVA 364 (526)
T ss_dssp EEES
T ss_pred cccc
Confidence 9986
No 141
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=78.14 E-value=16 Score=34.84 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 296 QKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 296 qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
...+++.|+++|+|++- ..- --+++..|...|+|.+=+=
T Consensus 90 ~~~v~~~~~~~~i~~iP----------G~~---TptEi~~A~~~Ga~~vKlF 128 (204)
T TIGR01182 90 TPELAKHAQDHGIPIIP----------GVA---TPSEIMLALELGITALKLF 128 (204)
T ss_pred CHHHHHHHHHcCCcEEC----------CCC---CHHHHHHHHHCCCCEEEEC
Confidence 45899999999999983 112 2356688888999998874
No 142
>PRK15447 putative protease; Provisional
Probab=78.10 E-value=39 Score=33.81 Aligned_cols=116 Identities=17% Similarity=0.126 Sum_probs=73.5
Q ss_pred ccCHHHHHHHhh-hcCCcEEEEecCC-------CHHHHHHHHHHHHhcCCCCCceE-EEEe-cCHHhHhhHHHHHhhC-c
Q 014746 206 DKDKEVISTWGA-RNNIDFLSLSHTR-------GAEDVRHARDFLSQLGDLGQTQI-FAKI-ENTEGLTHFDEILHEA-D 274 (419)
Q Consensus 206 e~D~~di~~~~l-~~g~d~I~lsfV~-------saedv~~v~~~l~~~~~~~~~~I-iaKI-Et~~gv~nl~eI~~~s-D 274 (419)
....+++- .++ +.|||.|-+.... +.+++.++.+.+.++| ..+.+ +..| -..+-++.+.++++.. |
T Consensus 14 ~~~~~~~~-~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~g--kkvyva~p~i~~~~~e~~~l~~~l~~~~~ 90 (301)
T PRK15447 14 KETVRDFY-QRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAG--KEVVLSTLALVEAPSELKELRRLVENGEF 90 (301)
T ss_pred CCCHHHHH-HHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcC--CEEEEEecccccCHHHHHHHHHHHhcCCC
Confidence 35567775 445 6699999997432 6799999999998877 55554 3354 4566677778877763 6
Q ss_pred EEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccc
Q 014746 275 GIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (419)
Q Consensus 275 gImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ET 350 (419)
+|++ +|+| .+. .+++.|+|++. |||= +.| .+.. .-+-..|++.+.||.|-
T Consensus 91 ~v~v--~d~g------~l~--------~~~e~~~~l~~d~~ln---i~N-----~~a~--~~l~~~G~~rv~ls~EL 141 (301)
T PRK15447 91 LVEA--NDLG------AVR--------LLAERGLPFVAGPALN---CYN-----AATL--ALLARLGATRWCMPVEL 141 (301)
T ss_pred EEEE--eCHH------HHH--------HHHhcCCCEEEecccc---cCC-----HHHH--HHHHHcCCcEEEECCcC
Confidence 7766 3332 122 23334999998 8842 112 1111 22334599999999774
No 143
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.74 E-value=59 Score=31.45 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=75.9
Q ss_pred HHHHHHhhhcCCcEEEEecCC----------CHHHHHHHHHHHHhcCCCCCceEEEEe---------c------CHHhHh
Q 014746 210 EVISTWGARNNIDFLSLSHTR----------GAEDVRHARDFLSQLGDLGQTQIFAKI---------E------NTEGLT 264 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~lsfV~----------saedv~~v~~~l~~~~~~~~~~IiaKI---------E------t~~gv~ 264 (419)
+.++ .+.++|.|+|-++.-. +++++.++++.+.+.| +.|.+.. - ..++++
T Consensus 25 e~~~-~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g----l~i~~~~~~~~~~~~~~~~~~~~r~~~~~ 99 (283)
T PRK13209 25 EKLA-IAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETG----FRVNSMCLSAHRRFPLGSEDDAVRAQALE 99 (283)
T ss_pred HHHH-HHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcC----CceeEEecccccccCCCCCCHHHHHHHHH
Confidence 3453 7789999999997532 6888999999998877 2222210 0 123455
Q ss_pred hHHHHHhh-----CcEEEEeCCCccCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHH
Q 014746 265 HFDEILHE-----ADGIILARGNLGVDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVA 334 (419)
Q Consensus 265 nl~eI~~~-----sDgImIargDLg~elg~----e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~ 334 (419)
.+..-++. +..|.++.++...+.+. +.+...-+.+...|.++|+.+.+ +. -....+|-.+.-++.
T Consensus 100 ~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~-----~~~~~~~~~~~~~ll 174 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIM-----DTPFMNSISKALGYA 174 (283)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec-----CCcccCCHHHHHHHH
Confidence 55555554 35666654433322222 22333446788888899998886 53 334445556666666
Q ss_pred HHHHcCCceEEeccc
Q 014746 335 NAVLDGSDAILLGAE 349 (419)
Q Consensus 335 nav~~G~D~vmLs~E 349 (419)
..+ +.+.+-+.-+
T Consensus 175 ~~v--~~~~lgl~~D 187 (283)
T PRK13209 175 HYL--NSPWFQLYPD 187 (283)
T ss_pred HHh--CCCccceEec
Confidence 554 4455555544
No 144
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=77.58 E-value=16 Score=34.16 Aligned_cols=143 Identities=23% Similarity=0.260 Sum_probs=81.5
Q ss_pred CCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhh-------HHHHHhh-C
Q 014746 202 PTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTH-------FDEILHE-A 273 (419)
Q Consensus 202 p~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~n-------l~eI~~~-s 273 (419)
|..|+.|.+.+.+.+.+.++|.|+++ +..+..+++.+.. ..+.+-+=+=.|.|-.. +++-++. +
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~----~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GA 83 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG----SGVKVCTVIGFPLGATTTEVKVAEAREAIADGA 83 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC----CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCC
Confidence 66788888776667788899999987 6777777776642 23455554544444333 3333333 4
Q ss_pred cEEEEeCCCccCCC-C-chhHHHHHHHHHHHHHHcCCcEEE---EccccccccCCCcchhhHhHHH-HHHHcCCceEEec
Q 014746 274 DGIILARGNLGVDL-P-PEKVFLFQKAALYKCNMAGKPAVV---TRVVDSMTDNLRPTRAEATDVA-NAVLDGSDAILLG 347 (419)
Q Consensus 274 DgImIargDLg~el-g-~e~v~~~qk~Ii~a~~~~gkpvi~---TqmLeSM~~~~~PtraEv~Dv~-nav~~G~D~vmLs 347 (419)
|.|-+-- +.|.-. + ++.+..--+++..+|. |+|+.+ +.-| +..++...+ -++..|+|.+=-|
T Consensus 84 devdvv~-~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l---------~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 84 DEIDMVI-NIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLL---------TDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred CEEEEee-cHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCC---------CHHHHHHHHHHHHHhCCCEEEcC
Confidence 6554310 111100 1 1223333355555554 788743 3322 345665544 4567799987654
Q ss_pred ccccCCCC----HHHHHHHHHHHHH
Q 014746 348 AETLRGLY----PVETISIVGKICA 368 (419)
Q Consensus 348 ~ETa~G~y----P~eaV~~~~~I~~ 368 (419)
.|.. -++.|+.|+++++
T Consensus 152 ----TG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 152 ----TGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred ----CCCCCCCCCHHHHHHHHHHhC
Confidence 5543 2478888888877
No 145
>TIGR03586 PseI pseudaminic acid synthase.
Probab=77.50 E-value=41 Score=34.30 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=39.4
Q ss_pred HHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHH-cCCce
Q 014746 267 DEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL-DGSDA 343 (419)
Q Consensus 267 ~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~-~G~D~ 343 (419)
+.+... .|.+=||-+|+.- + .+++++.+.|||+++ |. ..|-+|+...+.++. .|.+-
T Consensus 104 d~l~~~~v~~~KI~S~~~~n------~-----~LL~~va~~gkPvilstG---------~~t~~Ei~~Av~~i~~~g~~~ 163 (327)
T TIGR03586 104 DFLESLDVPAYKIASFEITD------L-----PLIRYVAKTGKPIIMSTG---------IATLEEIQEAVEACREAGCKD 163 (327)
T ss_pred HHHHHcCCCEEEECCccccC------H-----HHHHHHHhcCCcEEEECC---------CCCHHHHHHHHHHHHHCCCCc
Confidence 333344 5778888777632 2 245556778999998 76 347788888888876 46633
Q ss_pred EEe
Q 014746 344 ILL 346 (419)
Q Consensus 344 vmL 346 (419)
++|
T Consensus 164 i~L 166 (327)
T TIGR03586 164 LVL 166 (327)
T ss_pred EEE
Confidence 444
No 146
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.33 E-value=14 Score=35.22 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=65.0
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCC--------ccCCCCch--hHH
Q 014746 224 LSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGN--------LGVDLPPE--KVF 293 (419)
Q Consensus 224 I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargD--------Lg~elg~e--~v~ 293 (419)
|.+=...++++...+.+.+.+.|. +. |=.-.-|+.+++.+.++.+....++||-|= .+.+.|.+ -.|
T Consensus 18 iaV~r~~~~~~a~~i~~al~~~Gi--~~-iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 18 VPVIVINKLEDAVPLAKALVAGGL--PV-LEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCC--CE-EEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 444456777777777777766552 11 112256777777777777665456666541 11111110 123
Q ss_pred HHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 294 LFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 294 ~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
.+-..+++.|+++++|.+= ..-|..| +..|...|+|.+=|
T Consensus 95 ~~~~~vi~~a~~~~i~~iP----------G~~TptE---i~~a~~~Ga~~vKl 134 (212)
T PRK05718 95 GLTPPLLKAAQEGPIPLIP----------GVSTPSE---LMLGMELGLRTFKF 134 (212)
T ss_pred CCCHHHHHHHHHcCCCEeC----------CCCCHHH---HHHHHHCCCCEEEE
Confidence 3345789999999999882 1223334 67788889999988
No 147
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=76.71 E-value=29 Score=34.12 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=70.6
Q ss_pred HHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEE--EeCCCccCCCCc-h
Q 014746 214 TWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGII--LARGNLGVDLPP-E 290 (419)
Q Consensus 214 ~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgIm--IargDLg~elg~-e 290 (419)
+.+.+.|+|++.+|-.- .++..++.+.+.+.| +..|.-+=...--+.+..|++.+.|.+ +++ .|+ .|. .
T Consensus 111 ~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~g----l~~I~lvap~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~~~ 182 (258)
T PRK13111 111 ADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHG----LDLIFLVAPTTTDERLKKIASHASGFVYYVSR--AGV-TGARS 182 (258)
T ss_pred HHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcC----CcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCccc
Confidence 36678999999999764 578888888887765 444444433333668889999987755 444 332 333 1
Q ss_pred hHHHHHHHHHHHHHHc-CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 291 KVFLFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 291 ~v~~~qk~Ii~a~~~~-gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
..+.-....+..++++ ++|+++ .. .=++++ +..+.. ++|++...
T Consensus 183 ~~~~~~~~~i~~vk~~~~~pv~vGfG---------I~~~e~---v~~~~~-~ADGviVG 228 (258)
T PRK13111 183 ADAADLAELVARLKAHTDLPVAVGFG---------ISTPEQ---AAAIAA-VADGVIVG 228 (258)
T ss_pred CCCccHHHHHHHHHhcCCCcEEEEcc---------cCCHHH---HHHHHH-hCCEEEEc
Confidence 2333344555555554 999998 55 333443 344443 48998876
No 148
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=76.67 E-value=39 Score=31.14 Aligned_cols=127 Identities=16% Similarity=0.053 Sum_probs=69.6
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccC-------CC
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGV-------DL 287 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~-------el 287 (419)
.+.+.|+|+|.++.-.. ....++... + ....+-+..-|++-+ ......-+|.|.+++-.=+. ..
T Consensus 76 ~a~~~gad~vh~~~~~~--~~~~~~~~~---~--~~~~~g~~~~t~~e~--~~a~~~gaD~v~~~~~~~~~~~~~~~~~~ 146 (212)
T PRK00043 76 LALAVGADGVHLGQDDL--PVADARALL---G--PDAIIGLSTHTLEEA--AAALAAGADYVGVGPIFPTPTKKDAKAPQ 146 (212)
T ss_pred HHHHcCCCEEecCcccC--CHHHHHHHc---C--CCCEEEEeCCCHHHH--HHHhHcCCCEEEECCccCCCCCCCCCCCC
Confidence 45789999998875321 233333322 2 233333333332221 11112236999887533222 11
Q ss_pred CchhHHHHHHHHHHHHHHcC-CcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHH
Q 014746 288 PPEKVFLFQKAALYKCNMAG-KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGK 365 (419)
Q Consensus 288 g~e~v~~~qk~Ii~a~~~~g-kpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~ 365 (419)
|++.+.. + +.... .|++. ..+ +. .++..+...|+|++.+.+.-..-..|.++++.+.+
T Consensus 147 g~~~~~~----~---~~~~~~~~v~a~GGI----------~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 147 GLEGLRE----I---RAAVGDIPIVAIGGI----------TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred CHHHHHH----H---HHhcCCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHH
Confidence 2222222 2 22223 88887 442 22 45667778899999997665455679999998888
Q ss_pred HHHHH
Q 014746 366 ICAEA 370 (419)
Q Consensus 366 I~~~a 370 (419)
.+.++
T Consensus 207 ~~~~~ 211 (212)
T PRK00043 207 AFRAA 211 (212)
T ss_pred HHhhc
Confidence 77654
No 149
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=76.67 E-value=13 Score=35.46 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=89.0
Q ss_pred CCCCcc-CHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecC-----HHh-----HhhHHHHH
Q 014746 202 PTLTDK-DKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIEN-----TEG-----LTHFDEIL 270 (419)
Q Consensus 202 p~lte~-D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt-----~~g-----v~nl~eI~ 270 (419)
|.+|.. |.+.+...+++.+++.|+++ +.-+..+++.+...+ ..+.++..... ..- +...++.+
T Consensus 13 ~~~~~~~~~~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~--~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~ 86 (236)
T PF01791_consen 13 GPMTGEEDIKKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSG--VKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAI 86 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTST--SEEEEEESTTTSSSTHHHHTCEEEHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccc--cccceEEEeCCCCCccccccccchHHHHHHHH
Confidence 444444 54444347788999999987 344555555553322 24556666543 222 45555555
Q ss_pred hh-CcEEEE--eCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhh---------HhHHH-HHH
Q 014746 271 HE-ADGIIL--ARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAE---------ATDVA-NAV 337 (419)
Q Consensus 271 ~~-sDgImI--argDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraE---------v~Dv~-nav 337 (419)
+. +|+|-+ -.+-++-+- ...+..--+++++.|+.+|.|+|+ . +.|+..+ +...+ -+.
T Consensus 87 ~~GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIl--------E-~~l~~~~~~~~~~~~~I~~a~ria~ 156 (236)
T PF01791_consen 87 RLGADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVIL--------E-PYLRGEEVADEKKPDLIARAARIAA 156 (236)
T ss_dssp HTT-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEE--------E-ECECHHHBSSTTHHHHHHHHHHHHH
T ss_pred HcCCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEE--------E-EecCchhhcccccHHHHHHHHHHHH
Confidence 54 565533 221122111 234555557899999999999997 2 3444444 22222 346
Q ss_pred HcCCceEEecccccCCCCHHHHHHHHHHHHHHHhc
Q 014746 338 LDGSDAILLGAETLRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 338 ~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~ 372 (419)
..|+|.+=.+.=.. ...-.+.++.|+++++.+..
T Consensus 157 e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~ 190 (236)
T PF01791_consen 157 ELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPV 190 (236)
T ss_dssp HTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSS
T ss_pred HhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCC
Confidence 68999987763222 45567889999999987753
No 150
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=76.61 E-value=15 Score=36.15 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=49.2
Q ss_pred hhcCCcEEEEecCCC-----HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeC-----CCccCC
Q 014746 217 ARNNIDFLSLSHTRG-----AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILAR-----GNLGVD 286 (419)
Q Consensus 217 l~~g~d~I~lsfV~s-----aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIar-----gDLg~e 286 (419)
...++|+|++|=-.+ .++++++|+.+ . ++|+ +=|=--.+|+.++++.+||++||. |+..-.
T Consensus 169 ~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~------~-~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~ 239 (254)
T PF03437_consen 169 ERGGADAVIVTGKATGEPPDPEKLKRVREAV------P-VPVL--VGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENP 239 (254)
T ss_pred HhcCCCEEEECCcccCCCCCHHHHHHHHhcC------C-CCEE--EecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCc
Confidence 367999999998774 55555555543 2 3444 445555789999999999999985 555556
Q ss_pred CCchhHHHHHH
Q 014746 287 LPPEKVFLFQK 297 (419)
Q Consensus 287 lg~e~v~~~qk 297 (419)
+..+++..+.+
T Consensus 240 VD~~Rv~~fm~ 250 (254)
T PF03437_consen 240 VDPERVRRFME 250 (254)
T ss_pred CCHHHHHHHHH
Confidence 66565554443
No 151
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=76.27 E-value=49 Score=32.49 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 014746 232 AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAV 311 (419)
Q Consensus 232 aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi 311 (419)
.+.++.++++.++.| +.+++-+-....++-+.+ ..|.+-||-+++.- ..++.++.+.||||+
T Consensus 75 ~~gl~~l~~~~~~~G----l~~~t~~~d~~~~~~l~~---~~d~lkI~s~~~~n-----------~~LL~~~a~~gkPVi 136 (260)
T TIGR01361 75 EEGLKLLRRAADEHG----LPVVTEVMDPRDVEIVAE---YADILQIGARNMQN-----------FELLKEVGKQGKPVL 136 (260)
T ss_pred HHHHHHHHHHHHHhC----CCEEEeeCChhhHHHHHh---hCCEEEECcccccC-----------HHHHHHHhcCCCcEE
Confidence 566777888777655 788888888777766655 47999999776542 347788888999999
Q ss_pred E-EccccccccCCCcchhhHhHHHHHHH-cCCceEEec
Q 014746 312 V-TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILLG 347 (419)
Q Consensus 312 ~-TqmLeSM~~~~~PtraEv~Dv~nav~-~G~D~vmLs 347 (419)
+ |.|. +|-+|+...+..+. .|.+-++|.
T Consensus 137 lk~G~~--------~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 137 LKRGMG--------NTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred EeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEE
Confidence 9 6533 46778888887775 577656664
No 152
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=75.93 E-value=88 Score=31.14 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=93.7
Q ss_pred CcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEe-cCCC-----HHHHHHHHHHHHhcCCCCCceEEEEecCHHh
Q 014746 189 LYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLS-HTRG-----AEDVRHARDFLSQLGDLGQTQIFAKIENTEG 262 (419)
Q Consensus 189 ~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~ls-fV~s-----aedv~~v~~~l~~~~~~~~~~IiaKIEt~~g 262 (419)
|-|-.-|+.. +|..++..|.+...+.|++.|=+- |+.. ..|-.++.+.+.+. .+..+.+..-+.++
T Consensus 13 RDG~Q~~~~~-----~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~---~~~~~~~l~~~~~~ 84 (287)
T PRK05692 13 RDGLQNEKRF-----IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR---PGVTYAALTPNLKG 84 (287)
T ss_pred CccccCcCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc---CCCeEEEEecCHHH
Confidence 3444445443 355666666556678999999763 5432 11223333333321 23444444445555
Q ss_pred HhhHHHHHhhCcEE--EEeCCCc----cCCCCchhHHHHHHHHHHHHHHcCCcEEE--EccccccccCCCc---chhhHh
Q 014746 263 LTHFDEILHEADGI--ILARGNL----GVDLPPEKVFLFQKAALYKCNMAGKPAVV--TRVVDSMTDNLRP---TRAEAT 331 (419)
Q Consensus 263 v~nl~eI~~~sDgI--mIargDL----g~elg~e~v~~~qk~Ii~a~~~~gkpvi~--TqmLeSM~~~~~P---traEv~ 331 (419)
++..-+- -.|.+ ++.-.|+ -.....++.....+.+++.|+++|+.+.. +-.+ ..|.- +.+.+.
T Consensus 85 ie~A~~~--g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~----~~~~~~~~~~~~~~ 158 (287)
T PRK05692 85 LEAALAA--GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVL----GCPYEGEVPPEAVA 158 (287)
T ss_pred HHHHHHc--CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEe----cCCCCCCCCHHHHH
Confidence 5443221 13543 3333333 11122344455557899999999998753 1111 12222 334444
Q ss_pred HHH-HHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHH
Q 014746 332 DVA-NAVLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 332 Dv~-nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
+++ .+...|+|.+.|. +|.=--.|.+.-+++..+.++.
T Consensus 159 ~~~~~~~~~G~d~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 159 DVAERLFALGCYEISLG-DTIGVGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred HHHHHHHHcCCcEEEec-cccCccCHHHHHHHHHHHHHhC
Confidence 444 5567799999997 8888889999999998887654
No 153
>PLN02321 2-isopropylmalate synthase
Probab=75.85 E-value=61 Score=36.09 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=99.6
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEec-CCCHHHHHHHHHHHHhcC-CCCCceEEEEec-----CHHhHhhHHHHHhhC---
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSH-TRGAEDVRHARDFLSQLG-DLGQTQIFAKIE-----NTEGLTHFDEILHEA--- 273 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsf-V~saedv~~v~~~l~~~~-~~~~~~IiaKIE-----t~~gv~nl~eI~~~s--- 273 (419)
+|..++..|.+...+.|+|.|=+.| .-|+.|.+.++.+..... ....-..+++|= +.++++..-+=+.-+
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~ 184 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRP 184 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCC
Confidence 4666776666566779999999877 677888888777654321 000011223332 445554333321112
Q ss_pred -cEEEEeCCCccCC----CCchhHHHHHHHHHHHHHHcCCc-EEE-EccccccccCCCcchhhHhHHHH-HHHcCCceEE
Q 014746 274 -DGIILARGNLGVD----LPPEKVFLFQKAALYKCNMAGKP-AVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAIL 345 (419)
Q Consensus 274 -DgImIargDLg~e----lg~e~v~~~qk~Ii~a~~~~gkp-vi~-TqmLeSM~~~~~PtraEv~Dv~n-av~~G~D~vm 345 (419)
=.++++-.|+-.+ +..+++...-..++..|+.+|.. +.+ .+ ...+-.+..+..++. ++..|+|.+-
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E------Da~rtd~d~l~~~~~~a~~aGa~~I~ 258 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPE------DAGRSDPEFLYRILGEVIKAGATTLN 258 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecc------cCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 2456666665433 23366777778899999999985 444 22 222333444555554 4557999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHHHH
Q 014746 346 LGAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 346 Ls~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
|. +|.=...|.+.-+++..+.+..
T Consensus 259 L~-DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 259 IP-DTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred ec-ccccCCCHHHHHHHHHHHHHhc
Confidence 97 8999999999999998887764
No 154
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=75.43 E-value=45 Score=34.07 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=35.4
Q ss_pred CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHc-CCc
Q 014746 273 ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLD-GSD 342 (419)
Q Consensus 273 sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~-G~D 342 (419)
.|.+=||-+|+.- -.+++++.+.|||+|+ |. ..|-+|+...+.++.. |.+
T Consensus 110 v~~~KIaS~~~~n-----------~pLL~~~A~~gkPvilStG---------matl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 110 VPRFKIPSGEITN-----------APLLKKIARFGKPVILSTG---------MATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred CCEEEECcccccC-----------HHHHHHHHhcCCcEEEECC---------CCCHHHHHHHHHHHHHcCCC
Confidence 5777788777543 2355667788999998 77 3477888888888774 554
No 155
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=75.39 E-value=59 Score=31.22 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=86.9
Q ss_pred CCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhC-cEEEEeC
Q 014746 202 PTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEA-DGIILAR 280 (419)
Q Consensus 202 p~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~s-DgImIar 280 (419)
|..|+.|.+.+-+.+.+.|+..|+++ +..+..+++.|. + ..+.+.+=|==|.|....+.-+... +++--|.
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~--~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA 88 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--G--SDVKVCTVIGFPLGANTTAVKAFEAKDAIANGA 88 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--C--CCCeEEEEecccCCCChHHHHHHHHHHHHHcCC
Confidence 66788888877667788999999987 788888888884 3 4577777776666655544433321 1111111
Q ss_pred C--CccCCCCc---hhHHHHHHHHHHHHHH-cCCcEEEEccccccccCCCcchhhHhHHHH-HHHcCCceEEecccccCC
Q 014746 281 G--NLGVDLPP---EKVFLFQKAALYKCNM-AGKPAVVTRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGAETLRG 353 (419)
Q Consensus 281 g--DLg~elg~---e~v~~~qk~Ii~a~~~-~gkpvi~TqmLeSM~~~~~PtraEv~Dv~n-av~~G~D~vmLs~ETa~G 353 (419)
. |+.+.++. .++..+.+.|...... .++++ .=+ ++.+.-+..|+.++.. ++..|+|.+--| .|
T Consensus 89 ~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~l--KvI----lEt~~L~~e~i~~a~~~~~~agadfIKTs----TG 158 (221)
T PRK00507 89 DEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVL--KVI----IETCLLTDEEKVKACEIAKEAGADFVKTS----TG 158 (221)
T ss_pred ceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceE--EEE----eecCcCCHHHHHHHHHHHHHhCCCEEEcC----CC
Confidence 1 12223322 2344555444443333 24332 112 2355667778877775 667799955444 44
Q ss_pred CC----HHHHHHHHHHHH
Q 014746 354 LY----PVETISIVGKIC 367 (419)
Q Consensus 354 ~y----P~eaV~~~~~I~ 367 (419)
.. -.+.|+.|++.+
T Consensus 159 ~~~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 159 FSTGGATVEDVKLMRETV 176 (221)
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 43 378888887665
No 156
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=75.25 E-value=15 Score=34.82 Aligned_cols=77 Identities=14% Similarity=0.315 Sum_probs=53.9
Q ss_pred CceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcE
Q 014746 196 QIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADG 275 (419)
Q Consensus 196 ~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDg 275 (419)
+.+++.--+.+.=...+. .-.++|+|+|.+. +++.+++.++-+.++++| ....|..+-+| .++.++.++...|.
T Consensus 57 ~~~~DvHLMv~~P~~~i~-~~~~~g~~~i~~H-~E~~~~~~~~i~~ik~~g--~k~GialnP~T--~~~~~~~~l~~vD~ 130 (201)
T PF00834_consen 57 DLPLDVHLMVENPERYIE-EFAEAGADYITFH-AEATEDPKETIKYIKEAG--IKAGIALNPET--PVEELEPYLDQVDM 130 (201)
T ss_dssp SSEEEEEEESSSGGGHHH-HHHHHT-SEEEEE-GGGTTTHHHHHHHHHHTT--SEEEEEE-TTS---GGGGTTTGCCSSE
T ss_pred CCcEEEEeeeccHHHHHH-HHHhcCCCEEEEc-ccchhCHHHHHHHHHHhC--CCEEEEEECCC--CchHHHHHhhhcCE
Confidence 334444334433334565 3388999988876 567788889999999888 66777777787 56788999999999
Q ss_pred EEE
Q 014746 276 IIL 278 (419)
Q Consensus 276 ImI 278 (419)
|++
T Consensus 131 Vlv 133 (201)
T PF00834_consen 131 VLV 133 (201)
T ss_dssp EEE
T ss_pred EEE
Confidence 988
No 157
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=75.23 E-value=7.7 Score=41.12 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=42.6
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHH
Q 014746 29 MTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKI 78 (419)
Q Consensus 29 ~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~ 78 (419)
+-.+=+.+|....+.+....|+++|+++.-++.+||....+.+.|+++|+
T Consensus 212 ~l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 212 RLIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred CEEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 34455678887778889999999999999999999999888888888876
No 158
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=75.04 E-value=59 Score=31.55 Aligned_cols=149 Identities=13% Similarity=0.079 Sum_probs=84.2
Q ss_pred CCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecC--HHh--------HhhHHHHHh
Q 014746 202 PTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIEN--TEG--------LTHFDEILH 271 (419)
Q Consensus 202 p~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt--~~g--------v~nl~eI~~ 271 (419)
|..+..|.+.+...+.+.|+|.|+++. --++..++. .+ .++.++..+++ +.+ +..+++.++
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~~~---~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~ 101 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGHRG---YG--KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIR 101 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhcccc---cC--CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHH
Confidence 455777877665688899999999973 233332221 22 45678888843 221 133556665
Q ss_pred h-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhH-HHHHHHcCCceEEecc
Q 014746 272 E-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATD-VANAVLDGSDAILLGA 348 (419)
Q Consensus 272 ~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~D-v~nav~~G~D~vmLs~ 348 (419)
. +|++-+--. .+-+ +..+....-+++...|+++|.|+++ .... - ..-+..+..++.. +..+...|+|.+-.+
T Consensus 102 ~Ga~~v~~~~~-~g~~-~~~~~~~~~~~i~~~~~~~g~~liv~~~~~-G-vh~~~~~~~~~~~~~~~a~~~GADyikt~- 176 (258)
T TIGR01949 102 MGADAVSIHVN-VGSD-TEWEQIRDLGMIAEICDDWGVPLLAMMYPR-G-PHIDDRDPELVAHAARLGAELGADIVKTP- 176 (258)
T ss_pred CCCCEEEEEEe-cCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEecc-C-cccccccHHHHHHHHHHHHHHCCCEEecc-
Confidence 4 576655221 1111 2223345568899999999999987 3210 0 0011122334444 345667899999975
Q ss_pred cccCCCCHHHHHHHHHHHHHHHh
Q 014746 349 ETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 349 ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
|+. -++.|++++....
T Consensus 177 ------~~~-~~~~l~~~~~~~~ 192 (258)
T TIGR01949 177 ------YTG-DIDSFRDVVKGCP 192 (258)
T ss_pred ------CCC-CHHHHHHHHHhCC
Confidence 221 3555666665433
No 159
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=74.86 E-value=51 Score=34.24 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=79.5
Q ss_pred CeEEEEEEeCcEEecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEe---cCCCHHHHHHHHHHHHhcCCCC
Q 014746 173 EDVVCQIKNSAILARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLS---HTRGAEDVRHARDFLSQLGDLG 249 (419)
Q Consensus 173 ~~i~~~v~~gG~l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~ls---fV~saedv~~v~~~l~~~~~~~ 249 (419)
+.|+.++-.|. +++.|=.||+..+ |++ .+.+ +.+..|.|.+.-| -+.|.+|+.++.+.|++.+ .
T Consensus 136 ~~iEIKigQGA---KpG~GG~Lp~~KV-----~~~-ia~~--R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~--~ 202 (368)
T PF01645_consen 136 DMIEIKIGQGA---KPGEGGHLPGEKV-----TEE-IARI--RGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELN--P 202 (368)
T ss_dssp SEEEEE---TT---STTT--EE-GGG-------HH-HHHH--HTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH---T
T ss_pred CeEEEEEecCc---cccCcceechhhc-----hHH-HHHH--hCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhC--C
Confidence 34444544555 5567778888876 332 4555 3478899988754 4778888888888888887 7
Q ss_pred CceEEEEecCHHhHhhHHHHHhh--CcEEEEeCCCcc---------CCCCchhHHHHHHHHHHHHHHcC---CcEEE-Ec
Q 014746 250 QTQIFAKIENTEGLTHFDEILHE--ADGIILARGNLG---------VDLPPEKVFLFQKAALYKCNMAG---KPAVV-TR 314 (419)
Q Consensus 250 ~~~IiaKIEt~~gv~nl~eI~~~--sDgImIargDLg---------~elg~e~v~~~qk~Ii~a~~~~g---kpvi~-Tq 314 (419)
...|-.|+=.-..++.+...+.. +|.|.|.-++=| -+.|++. .....++.+...+.| +..++ +.
T Consensus 203 ~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~-~~~l~~a~~~L~~~glr~~V~Li~sG 281 (368)
T PF01645_consen 203 GKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPT-EYALARAHQALVKNGLRDRVSLIASG 281 (368)
T ss_dssp TSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---H-HHHHHHHHHHHHCTT-CCCSEEEEES
T ss_pred CCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcH-HHHHHHHHHHHHHcCCCCceEEEEeC
Confidence 78999999777666666664333 599999554422 2334332 222233334444443 34444 43
Q ss_pred cccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 315 VVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 315 mLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
=| .--.|++-++..|+|++-+.
T Consensus 282 gl-----------~t~~dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 282 GL-----------RTGDDVAKALALGADAVYIG 303 (368)
T ss_dssp S-------------SHHHHHHHHHCT-SEEE-S
T ss_pred Cc-----------cCHHHHHHHHhcCCCeeEec
Confidence 22 23578999999999999876
No 160
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=74.79 E-value=6.5 Score=40.24 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=43.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHc--CCCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 31 KIVGTLGPRSRSVEIISGCLNA--GMSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 31 kIi~TiGp~~~~~~~i~~li~~--Gm~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
.+.+.+|-..++.+.+.+|+++ |+|+.=|.-|||..+...++|+.||+.
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~ 148 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREA 148 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHh
Confidence 4556889888999999999994 999999999999999999999999874
No 161
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=74.76 E-value=34 Score=33.39 Aligned_cols=99 Identities=20% Similarity=0.342 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcE
Q 014746 231 GAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPA 310 (419)
Q Consensus 231 saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpv 310 (419)
+.++..++.+++++.| +..++-.=..++++-++++ -.+.+=||-+||. .+ .+++.+.+.|||+
T Consensus 54 ~~e~~~~L~~~~~~~g----i~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~------n~-----~lL~~~A~tgkPv 116 (241)
T PF03102_consen 54 SEEQHKELFEYCKELG----IDFFSTPFDEESVDFLEEL--GVPAYKIASGDLT------NL-----PLLEYIAKTGKPV 116 (241)
T ss_dssp -HHHHHHHHHHHHHTT-----EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-------H-----HHHHHHHTT-S-E
T ss_pred CHHHHHHHHHHHHHcC----CEEEECCCCHHHHHHHHHc--CCCEEEecccccc------CH-----HHHHHHHHhCCcE
Confidence 3455666666665544 4444444444444444332 2577888888876 22 3566788899999
Q ss_pred EE-EccccccccCCCcchhhHhHHHHHH-HcCCceEEecccccCCCCHH
Q 014746 311 VV-TRVVDSMTDNLRPTRAEATDVANAV-LDGSDAILLGAETLRGLYPV 357 (419)
Q Consensus 311 i~-TqmLeSM~~~~~PtraEv~Dv~nav-~~G~D~vmLs~ETa~G~yP~ 357 (419)
|+ |. .-|-+|+.+..+++ ..|.+=+.|-.= +..||.
T Consensus 117 IlSTG---------~stl~EI~~Av~~~~~~~~~~l~llHC--~s~YP~ 154 (241)
T PF03102_consen 117 ILSTG---------MSTLEEIERAVEVLREAGNEDLVLLHC--VSSYPT 154 (241)
T ss_dssp EEE-T---------T--HHHHHHHHHHHHHHCT--EEEEEE---SSSS-
T ss_pred EEECC---------CCCHHHHHHHHHHHHhcCCCCEEEEec--CCCCCC
Confidence 99 87 55788999999888 556655544322 556663
No 162
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=74.68 E-value=80 Score=31.04 Aligned_cols=67 Identities=21% Similarity=0.181 Sum_probs=46.3
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHH
Q 014746 287 LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGK 365 (419)
Q Consensus 287 lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~ 365 (419)
.|+.. +...+.|.+. .+.|||+ .. +-| -+|++.++..|+|+++++.=.+.++.|..-.+.+..
T Consensus 159 ~Gi~~-~~~I~~I~e~---~~vpVI~egG---------I~t---peda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~ 222 (248)
T cd04728 159 QGLLN-PYNLRIIIER---ADVPVIVDAG---------IGT---PSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKL 222 (248)
T ss_pred CCCCC-HHHHHHHHHh---CCCcEEEeCC---------CCC---HHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHH
Confidence 34433 4444444332 5789997 44 222 357789999999999999888888899888877766
Q ss_pred HHHH
Q 014746 366 ICAE 369 (419)
Q Consensus 366 I~~~ 369 (419)
-++.
T Consensus 223 Av~a 226 (248)
T cd04728 223 AVEA 226 (248)
T ss_pred HHHH
Confidence 5543
No 163
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=74.56 E-value=88 Score=30.49 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=96.4
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEe-cCCCHHHHHHHHHHHHhcCCCCCceEEEEe-cCHHhHhhHHHHHhh--CcEEEE-
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLS-HTRGAEDVRHARDFLSQLGDLGQTQIFAKI-ENTEGLTHFDEILHE--ADGIIL- 278 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~ls-fV~saedv~~v~~~l~~~~~~~~~~IiaKI-Et~~gv~nl~eI~~~--sDgImI- 278 (419)
++..++..+.....+.|++.|=+- |+.+++|.+.++.+. +.. .+..+.+.+ -+.++++.+-+-... .|.|-+
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~-~~~--~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~ 93 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIA-REV--LNAEICGLARAVKKDIDAAAEALKPAKVDRIHTF 93 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HhC--CCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEE
Confidence 455666666556678999998774 445888876665543 333 346666665 344555443332111 354433
Q ss_pred -eCCCccC----CCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHH-HHcCCceEEecccccC
Q 014746 279 -ARGNLGV----DLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANA-VLDGSDAILLGAETLR 352 (419)
Q Consensus 279 -argDLg~----elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~na-v~~G~D~vmLs~ETa~ 352 (419)
+-.|.-. ..+.++....-+..++.|+++|..+.++- ...++-+.+++.+++.. ...|+|.+.|. +|.=
T Consensus 94 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G 167 (268)
T cd07940 94 IATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA-----EDATRTDLDFLIEVVEAAIEAGATTINIP-DTVG 167 (268)
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee-----ecCCCCCHHHHHHHHHHHHHcCCCEEEEC-CCCC
Confidence 2223211 11223333444678889999998776521 12344566776666644 45699999997 8888
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 014746 353 GLYPVETISIVGKICAEAK 371 (419)
Q Consensus 353 G~yP~eaV~~~~~I~~~aE 371 (419)
.-+|.+.-+.++.+-+..-
T Consensus 168 ~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 168 YLTPEEFGELIKKLKENVP 186 (268)
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 8899999988888877653
No 164
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=74.45 E-value=59 Score=32.13 Aligned_cols=107 Identities=14% Similarity=0.232 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 014746 232 AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAV 311 (419)
Q Consensus 232 aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi 311 (419)
.+.++.++++..+.| +.+++-+-.+..++-+.+. .|.+-||-+++.- ..+++++.+.||||+
T Consensus 77 ~~gl~~l~~~~~~~G----l~~~te~~d~~~~~~l~~~---vd~~kIga~~~~n-----------~~LL~~~a~~gkPV~ 138 (266)
T PRK13398 77 EEGLKILKEVGDKYN----LPVVTEVMDTRDVEEVADY---ADMLQIGSRNMQN-----------FELLKEVGKTKKPIL 138 (266)
T ss_pred HHHHHHHHHHHHHcC----CCEEEeeCChhhHHHHHHh---CCEEEECcccccC-----------HHHHHHHhcCCCcEE
Confidence 567788888887655 7888888887777666654 7999998776543 346667778899999
Q ss_pred E-EccccccccCCCcchhhHhHHHHHHH-cCCceEEe--cccccCCCCHHHHHHHHH
Q 014746 312 V-TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILL--GAETLRGLYPVETISIVG 364 (419)
Q Consensus 312 ~-TqmLeSM~~~~~PtraEv~Dv~nav~-~G~D~vmL--s~ETa~G~yP~eaV~~~~ 364 (419)
+ |.| ..|-.|+-..+..+. .|..-++| .|-.....||-+.+.+-.
T Consensus 139 lk~G~--------~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~ 187 (266)
T PRK13398 139 LKRGM--------SATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAA 187 (266)
T ss_pred EeCCC--------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHH
Confidence 8 653 335567777776665 46644444 322134589977665443
No 165
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=74.35 E-value=44 Score=30.63 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=62.9
Q ss_pred CccCHHHHHHHhhhcCCcEEEE--ecCCC--HHHHHHHHHHHHhcCCCCCceEEE--EecCHHhHhhHHHHHhh-CcEEE
Q 014746 205 TDKDKEVISTWGARNNIDFLSL--SHTRG--AEDVRHARDFLSQLGDLGQTQIFA--KIENTEGLTHFDEILHE-ADGII 277 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~l--sfV~s--aedv~~v~~~l~~~~~~~~~~Iia--KIEt~~gv~nl~eI~~~-sDgIm 277 (419)
+..+...+.+. +..++++|=+ ||..+ .+.++.+++. . .+..+++ |+.++. -..+++..++ +|++.
T Consensus 11 ~~~~~~~~~~~-l~~~i~~ieig~~~~~~~g~~~i~~i~~~----~--~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~ 82 (202)
T cd04726 11 DLEEALELAKK-VPDGVDIIEAGTPLIKSEGMEAVRALREA----F--PDKIIVADLKTADAG-ALEAEMAFKAGADIVT 82 (202)
T ss_pred CHHHHHHHHHH-hhhcCCEEEcCCHHHHHhCHHHHHHHHHH----C--CCCEEEEEEEecccc-HHHHHHHHhcCCCEEE
Confidence 34444455434 3444888777 66432 3444444432 1 2345555 666653 1123555544 68877
Q ss_pred EeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 278 LARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 278 IargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+-- +..+..-+++++.|+++|++++++ ++ ..-|.. +...+...|+|.+.+.
T Consensus 83 ~h~---------~~~~~~~~~~i~~~~~~g~~~~v~-~~------~~~t~~---e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 83 VLG---------AAPLSTIKKAVKAAKKYGKEVQVD-LI------GVEDPE---KRAKLLKLGVDIVILH 133 (202)
T ss_pred EEe---------eCCHHHHHHHHHHHHHcCCeEEEE-Ee------CCCCHH---HHHHHHHCCCCEEEEc
Confidence 621 111233477889999999999851 00 011223 3345677799998883
No 166
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=74.27 E-value=6.8 Score=40.07 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=44.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHcC--CCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 31 KIVGTLGPRSRSVEIISGCLNAG--MSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 31 kIi~TiGp~~~~~~~i~~li~~G--m~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
.+.+.+|-..++.+.+++|+++| .|+.=|.-|||..+...++|++||+.
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~ 147 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA 147 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh
Confidence 45558899889999999999996 99999999999999999999999974
No 167
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=74.22 E-value=48 Score=31.21 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=62.8
Q ss_pred HHHHHHHhhhcCCcEEEEe--cCCCHH--HHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCc-
Q 014746 209 KEVISTWGARNNIDFLSLS--HTRGAE--DVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNL- 283 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~ls--fV~sae--dv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDL- 283 (419)
.+.+. .+.+.|+|+|.+- ..+.++ .+.++.+.+.+.+ ++.+++.+.|++-...+.+ .-+|.+.+...++
T Consensus 82 ~~~~~-~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g---~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t 155 (219)
T cd04729 82 IEEVD-ALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY---NCLLMADISTLEEALNAAK--LGFDIIGTTLSGYT 155 (219)
T ss_pred HHHHH-HHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh---CCeEEEECCCHHHHHHHHH--cCCCEEEccCcccc
Confidence 44664 6689999987662 222232 5555555555433 3677777776654322222 1258776533222
Q ss_pred --cCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 284 --GVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 284 --g~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
........+ ..-+++ ....++|++. ..+- ...|+..++..|+|+++..
T Consensus 156 ~~~~~~~~~~~-~~l~~i---~~~~~ipvia~GGI~------------~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 156 EETAKTEDPDF-ELLKEL---RKALGIPVIAEGRIN------------SPEQAAKALELGADAVVVG 206 (219)
T ss_pred ccccCCCCCCH-HHHHHH---HHhcCCCEEEeCCCC------------CHHHHHHHHHCCCCEEEEc
Confidence 111111111 111222 2233799987 4421 2356778888899999987
No 168
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=73.44 E-value=45 Score=31.47 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=64.2
Q ss_pred cCHHHHHHHhhhcCCcEEEEec--CCCHHHHHHHHHHHHhcCCCCCceEEEE-------ecC--------HHhHhhHHHH
Q 014746 207 KDKEVISTWGARNNIDFLSLSH--TRGAEDVRHARDFLSQLGDLGQTQIFAK-------IEN--------TEGLTHFDEI 269 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsf--V~saedv~~v~~~l~~~~~~~~~~IiaK-------IEt--------~~gv~nl~eI 269 (419)
.+.++++ .+++.|+|.|.++- .++++.+.++ ..+.+ .+. ++.- +++ ..-++-+..+
T Consensus 82 ~~~ed~~-~~~~~Ga~~vvlgs~~l~d~~~~~~~---~~~~g--~~~-i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~ 154 (230)
T TIGR00007 82 RSLEDVE-KLLDLGVDRVIIGTAAVENPDLVKEL---LKEYG--PER-IVVSLDARGGEVAVKGWLEKSEVSLEELAKRL 154 (230)
T ss_pred CCHHHHH-HHHHcCCCEEEEChHHhhCHHHHHHH---HHHhC--CCc-EEEEEEEECCEEEEcCCcccCCCCHHHHHHHH
Confidence 5677886 66899999888762 3445444444 44433 121 2211 111 1112222333
Q ss_pred Hhh-CcEEEEe-CCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 270 LHE-ADGIILA-RGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 270 ~~~-sDgImIa-rgDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
.+. +|++++. +.-=+..-|. .+.. +-..++....|++. .. .-+.+ |+..+...|+|++|+
T Consensus 155 ~~~g~~~ii~~~~~~~g~~~g~-~~~~----i~~i~~~~~ipvia~GG---------i~~~~---di~~~~~~Gadgv~i 217 (230)
T TIGR00007 155 EELGLEGIIYTDISRDGTLSGP-NFEL----TKELVKAVNVPVIASGG---------VSSID---DLIALKKLGVYGVIV 217 (230)
T ss_pred HhCCCCEEEEEeecCCCCcCCC-CHHH----HHHHHHhCCCCEEEeCC---------CCCHH---HHHHHHHCCCCEEEE
Confidence 333 5878763 2111122232 1221 22233446899987 44 44444 445555679999999
Q ss_pred cccccCCCCHH
Q 014746 347 GAETLRGLYPV 357 (419)
Q Consensus 347 s~ETa~G~yP~ 357 (419)
..---.|++|.
T Consensus 218 g~a~~~~~~~~ 228 (230)
T TIGR00007 218 GKALYEGKITL 228 (230)
T ss_pred eHHHHcCCCCC
Confidence 75545555543
No 169
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=73.10 E-value=98 Score=30.38 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=93.5
Q ss_pred CcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCC-CHHHHHHHHHHHHhcCCCCCceEEEE-ecCHHhHhhH
Q 014746 189 LYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTR-GAEDVRHARDFLSQLGDLGQTQIFAK-IENTEGLTHF 266 (419)
Q Consensus 189 ~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~-saedv~~v~~~l~~~~~~~~~~IiaK-IEt~~gv~nl 266 (419)
|-|...|+..+ |..++..|.+...+.|+|.|=+.+-. ++++...+ +.+...+ ....+.+- .-+.++++..
T Consensus 9 RDG~Q~~~~~~-----s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~-~~l~~~~--~~~~v~~~~r~~~~di~~a 80 (262)
T cd07948 9 REGEQFANAFF-----DTEDKIEIAKALDAFGVDYIELTSPAASPQSRADC-EAIAKLG--LKAKILTHIRCHMDDARIA 80 (262)
T ss_pred CCcCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH-HHHHhCC--CCCcEEEEecCCHHHHHHH
Confidence 55666666544 44555555456678999999884433 44444444 4444444 23333332 3344444433
Q ss_pred HHHHhhCcEEEE--eCCCccCC----CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHH-
Q 014746 267 DEILHEADGIIL--ARGNLGVD----LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL- 338 (419)
Q Consensus 267 ~eI~~~sDgImI--argDLg~e----lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~- 338 (419)
.+- -.|.|-+ .-.|.-.. ...++.....+.++..++++|..+.+ -. ++. ..| ..++.+++..+.
T Consensus 81 ~~~--g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e--da~-r~~---~~~l~~~~~~~~~ 152 (262)
T cd07948 81 VET--GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE--DSF-RSD---LVDLLRVYRAVDK 152 (262)
T ss_pred HHc--CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE--eeC-CCC---HHHHHHHHHHHHH
Confidence 321 1354433 32231111 22345556667889999999988766 22 111 122 445666665544
Q ss_pred cCCceEEecccccCCCCHHHHHHHHHHHHHH
Q 014746 339 DGSDAILLGAETLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 339 ~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~ 369 (419)
.|+|.+.|. +|.=.-+|.+.-+++..+-+.
T Consensus 153 ~g~~~i~l~-Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 153 LGVNRVGIA-DTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred cCCCEEEEC-CcCCCCCHHHHHHHHHHHHHh
Confidence 499999887 888889999888888877554
No 170
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=72.80 E-value=62 Score=33.42 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 233 EDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 233 edv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+....++++..+.| +.+++-+-....++-+.+ .+|.+-||-+++.- -.++.++.+.||||++
T Consensus 169 e~l~~L~~~~~~~G----l~~~t~v~d~~~~~~l~~---~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVil 230 (360)
T PRK12595 169 EGLKILKQVADEYG----LAVISEIVNPADVEVALD---YVDVIQIGARNMQN-----------FELLKAAGRVNKPVLL 230 (360)
T ss_pred HHHHHHHHHHHHcC----CCEEEeeCCHHHHHHHHH---hCCeEEECcccccC-----------HHHHHHHHccCCcEEE
Confidence 45556666666544 678887777666655555 48999999887654 2567778889999998
Q ss_pred -EccccccccCCCcchhhHhHHHHHHH-cCCceEEec
Q 014746 313 -TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILLG 347 (419)
Q Consensus 313 -TqmLeSM~~~~~PtraEv~Dv~nav~-~G~D~vmLs 347 (419)
|.|. .|-.|+...++.+. .|.+-++|.
T Consensus 231 k~G~~--------~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 231 KRGLS--------ATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred eCCCC--------CCHHHHHHHHHHHHHCCCCCEEEE
Confidence 6532 67788888887776 466556665
No 171
>PRK00208 thiG thiazole synthase; Reviewed
Probab=72.77 E-value=95 Score=30.58 Aligned_cols=52 Identities=27% Similarity=0.265 Sum_probs=40.3
Q ss_pred cCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHH
Q 014746 306 AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 306 ~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~ 369 (419)
.+.|||+ .. +-| -+|++.++..|+|++++++=.+..+.|.+-.+.+..-++.
T Consensus 174 ~~vpVIveaG---------I~t---peda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 174 ADVPVIVDAG---------IGT---PSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred cCCeEEEeCC---------CCC---HHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 4899998 44 222 2578999999999999998888888998877777665543
No 172
>PRK08227 autoinducer 2 aldolase; Validated
Probab=72.67 E-value=34 Score=33.92 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=70.0
Q ss_pred HHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceE
Q 014746 266 FDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAI 344 (419)
Q Consensus 266 l~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~v 344 (419)
+..++..+|+++.-+|=+.... -...++|.|+ ..-=.++. .+.+...-+++|-.|+..|+|+|
T Consensus 48 ~~~i~~~~da~~~~~G~~~~~~---------------~~~~~~~lil~ls~~t~~~-~~~~~~~l~~sVeeAvrlGAdAV 111 (264)
T PRK08227 48 IAPLFPYADVLMCTRGILRSVV---------------PPATNKPVVLRASGGNSIL-KELSNEAVAVDMEDAVRLNACAV 111 (264)
T ss_pred HHHHhhcCCEEEeChhHHHhcc---------------cccCCCcEEEEEcCCCCCC-CCCCcccceecHHHHHHCCCCEE
Confidence 5555555788887644322110 1224678777 43222333 22345666788999999999999
Q ss_pred EecccccCC-CCHHHHHHHHHHHHHHHhc-------------CCcChHHHHHHHHHHHHHCCC
Q 014746 345 LLGAETLRG-LYPVETISIVGKICAEAKT-------------TNATSESALKVALDYGKAHGV 393 (419)
Q Consensus 345 mLs~ETa~G-~yP~eaV~~~~~I~~~aE~-------------~~~~~~~~~~~a~~~~~~~~~ 393 (419)
..+-- .| .+=-+.++.+.++++++++ ...+....|..|...+.|.|-
T Consensus 112 ~~~v~--~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGA 172 (264)
T PRK08227 112 AAQVF--IGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGA 172 (264)
T ss_pred EEEEe--cCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcC
Confidence 88632 43 3445677888888888887 112333489999999988873
No 173
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=72.56 E-value=52 Score=33.56 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=66.4
Q ss_pred cCCcEEEEecC----------CCHHHHHHHHHHHHhcCCCC----CceEEEEecCHHhHhhHHHHHhh-----CcEEEEe
Q 014746 219 NNIDFLSLSHT----------RGAEDVRHARDFLSQLGDLG----QTQIFAKIENTEGLTHFDEILHE-----ADGIILA 279 (419)
Q Consensus 219 ~g~d~I~lsfV----------~saedv~~v~~~l~~~~~~~----~~~IiaKIEt~~gv~nl~eI~~~-----sDgImIa 279 (419)
.++|++-+.|- +.++.+.++.+.+.+.- . ++.|++||----..+++.++++. +|||.+-
T Consensus 168 ~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~--~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~ 245 (344)
T PRK05286 168 PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQ--AELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIAT 245 (344)
T ss_pred hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHH--hccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEe
Confidence 35999887652 24455555555554432 2 48899999732222245455443 4888774
Q ss_pred CC-----CccC-----CC-Cc---hhHHHHHHHHHHHHHHc--CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCc
Q 014746 280 RG-----NLGV-----DL-PP---EKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSD 342 (419)
Q Consensus 280 rg-----DLg~-----el-g~---e~v~~~qk~Ii~a~~~~--gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D 342 (419)
-+ |+.. .. |+ ...+...+.+-..+++. +.|+|- ..+. ...|+..++..|+|
T Consensus 246 nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~------------s~eda~e~l~aGAd 313 (344)
T PRK05286 246 NTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGID------------SAEDAYEKIRAGAS 313 (344)
T ss_pred CCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCCC
Confidence 32 1110 11 11 12233334444444555 578887 5533 34677888889999
Q ss_pred eEEecccc
Q 014746 343 AILLGAET 350 (419)
Q Consensus 343 ~vmLs~ET 350 (419)
+|++..-.
T Consensus 314 ~V~v~~~~ 321 (344)
T PRK05286 314 LVQIYSGL 321 (344)
T ss_pred HHHHHHHH
Confidence 99998544
No 174
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=72.45 E-value=6 Score=41.50 Aligned_cols=51 Identities=12% Similarity=0.185 Sum_probs=43.5
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 29 MTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 29 ~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
+-.+-+.+|+.-++.+.++.|+++|+++.=|..+||..+...++++++|+.
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~ 191 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTK 191 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhh
Confidence 456778888876677899999999999999999999988888888888763
No 175
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=72.07 E-value=64 Score=32.65 Aligned_cols=113 Identities=13% Similarity=0.188 Sum_probs=63.6
Q ss_pred HHHHHHHhhhcCCcEEEEecCCC-HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCC
Q 014746 209 KEVISTWGARNNIDFLSLSHTRG-AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDL 287 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV~s-aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~el 287 (419)
.+.+. .+++.++++|..+|=.- .+-++.+ .+ .++.++.++-|.+....+.+ .-+|+|++--.+=|=+.
T Consensus 103 ~~~~~-~~~~~~~~~v~~~~G~p~~~~i~~l----~~----~gi~v~~~v~s~~~A~~a~~--~G~D~iv~qG~eAGGH~ 171 (330)
T PF03060_consen 103 EEQLD-VALEAKPDVVSFGFGLPPPEVIERL----HA----AGIKVIPQVTSVREARKAAK--AGADAIVAQGPEAGGHR 171 (330)
T ss_dssp HHHHH-HHHHS--SEEEEESSSC-HHHHHHH----HH----TT-EEEEEESSHHHHHHHHH--TT-SEEEEE-TTSSEE-
T ss_pred ccccc-cccccceEEEEeecccchHHHHHHH----HH----cCCccccccCCHHHHHHhhh--cCCCEEEEeccccCCCC
Confidence 34454 66889999999998776 4444443 33 45899999988777654322 23799888432333333
Q ss_pred Cc--hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 288 PP--EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 288 g~--e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
|. +....+..++.. ...+|||. ..+- .-.+++.++..|+|++.+.
T Consensus 172 g~~~~~~~~L~~~v~~---~~~iPViaAGGI~------------dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 172 GFEVGSTFSLLPQVRD---AVDIPVIAAGGIA------------DGRGIAAALALGADGVQMG 219 (330)
T ss_dssp --SSG-HHHHHHHHHH---H-SS-EEEESS--------------SHHHHHHHHHCT-SEEEES
T ss_pred CccccceeeHHHHHhh---hcCCcEEEecCcC------------CHHHHHHHHHcCCCEeecC
Confidence 31 123333344433 33599998 5532 3567889999999999983
No 176
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=71.68 E-value=84 Score=28.96 Aligned_cols=100 Identities=19% Similarity=0.165 Sum_probs=64.0
Q ss_pred HHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEE-EecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchh
Q 014746 214 TWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFA-KIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEK 291 (419)
Q Consensus 214 ~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~Iia-KIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~ 291 (419)
+.+++.|++.|-+.. ++......++.+-...+ +..|-+ -|=|.+ ++++.+.. +|+++.+-.|
T Consensus 23 ~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~---~~~iGag~v~~~~---~~~~a~~~Ga~~i~~p~~~--------- 86 (190)
T cd00452 23 EALIEGGIRAIEITL-RTPGALEAIRALRKEFP---EALIGAGTVLTPE---QADAAIAAGAQFIVSPGLD--------- 86 (190)
T ss_pred HHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC---CCEEEEEeCCCHH---HHHHHHHcCCCEEEcCCCC---------
Confidence 466889999999995 67777776666554432 222221 233333 44555555 6888754333
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 292 VFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 292 v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
..++.+|+..|.|++. ..-| .+++..|...|+|.+.+.
T Consensus 87 -----~~~~~~~~~~~~~~i~----------gv~t---~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 -----PEVVKAANRAGIPLLP----------GVAT---PTEIMQALELGADIVKLF 124 (190)
T ss_pred -----HHHHHHHHHcCCcEEC----------CcCC---HHHHHHHHHCCCCEEEEc
Confidence 3588889999999875 0113 345677778899999984
No 177
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=71.09 E-value=1e+02 Score=29.73 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=56.1
Q ss_pred cCCCCCccCHHHHHHHhhhcCCcEEEE--ec---CCCHHHHHHHH--------------HHHHhcCCCCCceEEEEec-C
Q 014746 200 DLPTLTDKDKEVISTWGARNNIDFLSL--SH---TRGAEDVRHAR--------------DFLSQLGDLGQTQIFAKIE-N 259 (419)
Q Consensus 200 ~lp~lte~D~~di~~~~l~~g~d~I~l--sf---V~saedv~~v~--------------~~l~~~~~~~~~~IiaKIE-t 259 (419)
..|.+ +...+.++ ...+.|+|++-+ || +-+...|+.+- +.+.+.....+++++.+.. +
T Consensus 9 G~P~~-~~~~~~~~-~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n 86 (242)
T cd04724 9 GDPDL-ETTLEILK-ALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN 86 (242)
T ss_pred CCCCH-HHHHHHHH-HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 34443 23345554 546789998655 45 44444444321 1222211002455666666 4
Q ss_pred H---HhHhhHHHHHhh--CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 260 T---EGLTHFDEILHE--ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 260 ~---~gv~nl~eI~~~--sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+ .|++++-+-+.. +||+++- || ++| -.++++..|+++|...+.
T Consensus 87 ~~~~~G~~~fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 87 PILQYGLERFLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHhCHHHHHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEE
Confidence 3 345655444444 5999984 55 333 456899999999997775
No 178
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=70.97 E-value=57 Score=31.12 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=85.5
Q ss_pred CCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh--------C
Q 014746 202 PTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE--------A 273 (419)
Q Consensus 202 p~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~--------s 273 (419)
|..|+.|.+.+-+.+.+.++..|++ ++..+..+++.|. + .++.+.+=|==|.|-...+.-+.. +
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv----~p~~v~~a~~~l~--~--~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GA 84 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCV----NPSYVPLAKELLK--G--TEVRICTVVGFPLGASTTDVKLYETKEAIKYGA 84 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEe----CHHHHHHHHHHcC--C--CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCC
Confidence 5678888887666778889998887 4778888888884 3 457777777656555544333322 3
Q ss_pred cEEEEeCCCccCCCCc---hhHHHHH---HHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHH-HHHHcCCceEEe
Q 014746 274 DGIILARGNLGVDLPP---EKVFLFQ---KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVA-NAVLDGSDAILL 346 (419)
Q Consensus 274 DgImIargDLg~elg~---e~v~~~q---k~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~-nav~~G~D~vmL 346 (419)
|.|= +-+.+|. .+...+. ++|..+|. |+|+-+ ++| .+.-+..|+.... -++..|+|.+=-
T Consensus 85 dEiD-----vv~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv--IlE----~~~L~~~ei~~a~~ia~eaGADfvKT 151 (211)
T TIGR00126 85 DEVD-----MVINIGALKDGNEEVVYDDIRAVVEACA--GVLLKV--IIE----TGLLTDEEIRKACEICIDAGADFVKT 151 (211)
T ss_pred CEEE-----eecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE--EEe----cCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 4332 1222332 1233333 45555554 788654 222 2223345554433 356679998866
Q ss_pred cccccCCCC----HHHHHHHHHHHHHH
Q 014746 347 GAETLRGLY----PVETISIVGKICAE 369 (419)
Q Consensus 347 s~ETa~G~y----P~eaV~~~~~I~~~ 369 (419)
| .|.. -++.|+.|++++..
T Consensus 152 s----TGf~~~gat~~dv~~m~~~v~~ 174 (211)
T TIGR00126 152 S----TGFGAGGATVEDVRLMRNTVGD 174 (211)
T ss_pred C----CCCCCCCCCHHHHHHHHHHhcc
Confidence 5 5533 35888889888763
No 179
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=70.35 E-value=65 Score=32.91 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=51.4
Q ss_pred EEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCC
Q 014746 275 GIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRG 353 (419)
Q Consensus 275 gImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G 353 (419)
++|--+...|--.|+. =|...+.++.. ...|+++ .. +-+ -+|++.|+..|+|+++++.-.+..
T Consensus 221 avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivdAG---------Ig~---~sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 221 AVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVDAG---------VGT---ASDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred EEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEEeCC---------CCC---HHHHHHHHHcCCCEEEEcceeccC
Confidence 3444344445445544 23444444443 5799988 54 222 368899999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 014746 354 LYPVETISIVGKICA 368 (419)
Q Consensus 354 ~yP~eaV~~~~~I~~ 368 (419)
+.|+.--+-|+.-++
T Consensus 285 ~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 285 KNPVLMARAMKLAVE 299 (326)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999886666654433
No 180
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=70.30 E-value=84 Score=30.38 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=82.8
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCC
Q 014746 209 KEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLP 288 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg 288 (419)
...+..| .++|+|+|.+- ++..+++.++-+++++.| ....+.-+=+|+ ++.++.++...|.|++ ++++=|
T Consensus 74 ~~~i~~f-a~agad~It~H-~E~~~~~~r~i~~Ik~~G--~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll----MsVnPG 143 (220)
T COG0036 74 DRYIEAF-AKAGADIITFH-AEATEHIHRTIQLIKELG--VKAGLVLNPATP--LEALEPVLDDVDLVLL----MSVNPG 143 (220)
T ss_pred HHHHHHH-HHhCCCEEEEE-eccCcCHHHHHHHHHHcC--CeEEEEECCCCC--HHHHHHHHhhCCEEEE----EeECCC
Confidence 3455544 89999999875 678889999999999988 677788888887 5679999999999988 344444
Q ss_pred c----------hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHH
Q 014746 289 P----------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPV 357 (419)
Q Consensus 289 ~----------e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~ 357 (419)
+ +++..+.+.+-. .|...|. -. --+..- +..+...|+|.++..+---.+..-.
T Consensus 144 fgGQ~Fi~~~l~Ki~~lr~~~~~----~~~~~IeVDG---------GI~~~t---~~~~~~AGad~~VaGSalF~~~d~~ 207 (220)
T COG0036 144 FGGQKFIPEVLEKIRELRAMIDE----RLDILIEVDG---------GINLET---IKQLAAAGADVFVAGSALFGADDYK 207 (220)
T ss_pred CcccccCHHHHHHHHHHHHHhcc----cCCeEEEEeC---------CcCHHH---HHHHHHcCCCEEEEEEEEeCCccHH
Confidence 4 233333333322 3322232 11 111121 2334446999988865333333346
Q ss_pred HHHHHHHHHH
Q 014746 358 ETISIVGKIC 367 (419)
Q Consensus 358 eaV~~~~~I~ 367 (419)
++++.++...
T Consensus 208 ~~i~~~~~~~ 217 (220)
T COG0036 208 ATIRELRGEL 217 (220)
T ss_pred HHHHHHHHHh
Confidence 6666665543
No 181
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=69.98 E-value=1.3e+02 Score=30.45 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=33.0
Q ss_pred CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEeccc---ccCCCCHHHHHHHHHHHHHHHh
Q 014746 307 GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE---TLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 307 gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~E---Ta~G~yP~eaV~~~~~I~~~aE 371 (419)
..|+|. ..+- ...|+..++..|+|+++++.- .... -+-..++++..+..+..
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~ 310 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELR 310 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 789888 5522 347899999999999999842 1111 23334455655555444
No 182
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=69.79 E-value=97 Score=28.96 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=79.9
Q ss_pred CccCHHHHHHHhhhcCCcEEEEe-----cCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhh---HHHHHhh-CcE
Q 014746 205 TDKDKEVISTWGARNNIDFLSLS-----HTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTH---FDEILHE-ADG 275 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~ls-----fV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~n---l~eI~~~-sDg 275 (419)
+..|..++.+...+.|++++.+. |-.+.++++.+++.. +++|+.| ..+.+ +++..+. +|+
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-------~iPi~~~----~~i~~~~~v~~~~~~Gad~ 97 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-------SLPVLRK----DFIIDPYQIYEARAAGADA 97 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-------CCCEEEC----CeecCHHHHHHHHHcCCCE
Confidence 44566666556688999999763 446888888888754 3555554 23333 3444444 699
Q ss_pred EEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCC
Q 014746 276 IILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGL 354 (419)
Q Consensus 276 ImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~ 354 (419)
+.++--|+.. ..-+.++..+...|..+++ +. +-. ++..+...|+|.+..++.+. ..
T Consensus 98 v~l~~~~~~~--------~~~~~~~~~~~~~g~~~~v~v~-----------~~~---e~~~~~~~g~~~i~~t~~~~-~~ 154 (217)
T cd00331 98 VLLIVAALDD--------EQLKELYELARELGMEVLVEVH-----------DEE---ELERALALGAKIIGINNRDL-KT 154 (217)
T ss_pred EEEeeccCCH--------HHHHHHHHHHHHcCCeEEEEEC-----------CHH---HHHHHHHcCCCEEEEeCCCc-cc
Confidence 9987655431 3346677778888998876 43 222 35667778999998884331 12
Q ss_pred CHHHHHHHHHHHHHH
Q 014746 355 YPVETISIVGKICAE 369 (419)
Q Consensus 355 yP~eaV~~~~~I~~~ 369 (419)
++... +.+.++++.
T Consensus 155 ~~~~~-~~~~~l~~~ 168 (217)
T cd00331 155 FEVDL-NTTERLAPL 168 (217)
T ss_pred cCcCH-HHHHHHHHh
Confidence 22222 445555554
No 183
>PRK14057 epimerase; Provisional
Probab=69.58 E-value=1.2e+02 Score=29.92 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=86.0
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCC-------CCceEEEEecCHHhHhhHHHHHhhCcEE
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDL-------GQTQIFAKIENTEGLTHFDEILHEADGI 276 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~-------~~~~IiaKIEt~~gv~nl~eI~~~sDgI 276 (419)
+.+.=...+..| .++|+|+|.+- ++...++.+.-+.+++.|.. -...|..+-+| -++.++.++...|.|
T Consensus 83 MV~~P~~~i~~~-~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~V 158 (254)
T PRK14057 83 MVADQWTAAQAC-VKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVI 158 (254)
T ss_pred eeCCHHHHHHHH-HHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEE
Confidence 343334456534 78999988865 67667777777778777620 13667778888 567799999999999
Q ss_pred EEeCCCccCCCCc---hhHHHHHHHHHHHH---HHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEecccc
Q 014746 277 ILARGNLGVDLPP---EKVFLFQKAALYKC---NMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (419)
Q Consensus 277 mIargDLg~elg~---e~v~~~qk~Ii~a~---~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ET 350 (419)
++ ++++-|+ .-.+..-++|.+.. ..+|..+.+ | + .+--+.. -+...+..|+|.+++.+--
T Consensus 159 Lv----MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~I-e-----V-DGGI~~~---ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 159 QL----LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKII-V-----I-DGSLTQD---QLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred EE----EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceE-E-----E-ECCCCHH---HHHHHHHCCCCEEEEChHh
Confidence 88 3444444 22333333433322 234533322 0 0 1111222 2345566799998886332
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 014746 351 LRGLYPVETISIVGKICAE 369 (419)
Q Consensus 351 a~G~yP~eaV~~~~~I~~~ 369 (419)
-....+.++++.++++...
T Consensus 225 F~~~d~~~~i~~l~~~~~~ 243 (254)
T PRK14057 225 FRDDRLVENTRSWRAMFKV 243 (254)
T ss_pred hCCCCHHHHHHHHHHHHhh
Confidence 2233577888887766443
No 184
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=69.55 E-value=1.1e+02 Score=29.31 Aligned_cols=138 Identities=11% Similarity=0.174 Sum_probs=94.6
Q ss_pred HHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCc
Q 014746 210 EVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPP 289 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~ 289 (419)
+.+..+ .++|++.+.+- ++-.++..++.+.++++| -...+-.|=+|+ |+.++..+...|-++| .++|=|+
T Consensus 78 q~V~~~-a~agas~~tfH-~E~~q~~~~lv~~ir~~G--mk~G~alkPgT~--Ve~~~~~~~~~D~vLv----MtVePGF 147 (224)
T KOG3111|consen 78 QWVDQM-AKAGASLFTFH-YEATQKPAELVEKIREKG--MKVGLALKPGTP--VEDLEPLAEHVDMVLV----MTVEPGF 147 (224)
T ss_pred HHHHHH-HhcCcceEEEE-EeeccCHHHHHHHHHHcC--CeeeEEeCCCCc--HHHHHHhhccccEEEE----EEecCCC
Confidence 344434 57899977654 566677888889999888 566677777774 6777777777787777 3566665
Q ss_pred h---hHHHHHHHHHHHHHHcCCcEE-E-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHH
Q 014746 290 E---KVFLFQKAALYKCNMAGKPAV-V-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVG 364 (419)
Q Consensus 290 e---~v~~~qk~Ii~a~~~~gkpvi-~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~ 364 (419)
. -++....++-+.-.++..+.| + .. -.|. -+..+...|+++++-..-.-.-.-|-++++.|+
T Consensus 148 GGQkFme~mm~KV~~lR~kyp~l~ievDGG--------v~~~-----ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr 214 (224)
T KOG3111|consen 148 GGQKFMEDMMPKVEWLREKYPNLDIEVDGG--------VGPS-----TIDKAAEAGANMIVAGSAVFGAADPSDVISLLR 214 (224)
T ss_pred chhhhHHHHHHHHHHHHHhCCCceEEecCC--------cCcc-----hHHHHHHcCCCEEEecceeecCCCHHHHHHHHH
Confidence 2 234444555555568888888 3 32 1222 245566679999887655556677999999999
Q ss_pred HHHHHH
Q 014746 365 KICAEA 370 (419)
Q Consensus 365 ~I~~~a 370 (419)
+.++.+
T Consensus 215 ~~v~~a 220 (224)
T KOG3111|consen 215 NSVEKA 220 (224)
T ss_pred HHHhhh
Confidence 988765
No 185
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=69.22 E-value=38 Score=37.96 Aligned_cols=148 Identities=15% Similarity=0.114 Sum_probs=85.7
Q ss_pred HhhhcCCcEEEEe--cCCCHHHHHHHHHHHHhcCCCCCceEEEEec--CHHhHhhHHHHHhhCcEEEEeCCCccCCCC--
Q 014746 215 WGARNNIDFLSLS--HTRGAEDVRHARDFLSQLGDLGQTQIFAKIE--NTEGLTHFDEILHEADGIILARGNLGVDLP-- 288 (419)
Q Consensus 215 ~~l~~g~d~I~ls--fV~saedv~~v~~~l~~~~~~~~~~IiaKIE--t~~gv~nl~eI~~~sDgImIargDLg~elg-- 288 (419)
...+.|+|.|-+. -.+.++.+..+++.|.+.+ ..++++|-|- -..|+.. ++.+|.|=|-||.++-.-.
T Consensus 118 ~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g--~~iPLVADIHF~~~~Al~a----~~~vdkiRINPGN~~~~~k~F 191 (733)
T PLN02925 118 RIADKGADIVRITVQGKKEADACFEIKNTLVQKG--YNIPLVADIHFAPSVALRV----AECFDKIRVNPGNFADRRAQF 191 (733)
T ss_pred HHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcC--CCCCEEEecCCCHHHHHHH----HHhcCCeEECCcccCCccccc
Confidence 3467899997765 3344444455555555566 6789999883 3344432 2338999999999887621
Q ss_pred -------------chhHHHHHHHHHHHHHHcCCcEEE-E--ccccccccC-CCcch-hhH----hHHHHHHHcCCceEEe
Q 014746 289 -------------PEKVFLFQKAALYKCNMAGKPAVV-T--RVVDSMTDN-LRPTR-AEA----TDVANAVLDGSDAILL 346 (419)
Q Consensus 289 -------------~e~v~~~qk~Ii~a~~~~gkpvi~-T--qmLeSM~~~-~~Ptr-aEv----~Dv~nav~~G~D~vmL 346 (419)
++++..--..++.+|+++|+|+=+ + .=|+.=+.+ --+|. +-+ .-+.-+-..|.+=+.+
T Consensus 192 ~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~divi 271 (733)
T PLN02925 192 EKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVF 271 (733)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 122333334699999999999854 4 222211111 11221 111 2222344568888888
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHh
Q 014746 347 GAETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 347 s~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
|- +...|...|...+..+.+..
T Consensus 272 S~---KsSn~~~~V~AyR~La~~L~ 293 (733)
T PLN02925 272 SM---KASNPVVMVQAYRLLVAEMY 293 (733)
T ss_pred EE---EcCChHHHHHHHHHHHHHHH
Confidence 74 44456666666666655543
No 186
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=68.97 E-value=11 Score=40.44 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=40.2
Q ss_pred EEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 32 IVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 32 Ii~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
+=+.+|..-++.+.++.|+++|+++.=++.+||...+..+.|++||+.
T Consensus 232 Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~ 279 (495)
T PTZ00314 232 VGAAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSN 279 (495)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhh
Confidence 335778766778999999999999999999999988877788777763
No 187
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=68.88 E-value=1.2e+02 Score=29.73 Aligned_cols=161 Identities=15% Similarity=0.153 Sum_probs=90.9
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEec-CCCHHHHHHHHHHHHhcCCCCCceEEEEecC-HHhHh-----hHHHHHhh-CcE
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSH-TRGAEDVRHARDFLSQLGDLGQTQIFAKIEN-TEGLT-----HFDEILHE-ADG 275 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsf-V~saedv~~v~~~l~~~~~~~~~~IiaKIEt-~~gv~-----nl~eI~~~-sDg 275 (419)
+|..++..+.+...+.|+|.|=+-| .-++.++..++.+....- .+..+.+..-. ..++. .++..++. .|.
T Consensus 17 ~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~ 94 (273)
T cd07941 17 FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKL--KHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPV 94 (273)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCC--CCcEEEEEecccccCCCccchHHHHHHHhCCCCE
Confidence 4556666665566789999998744 346778777765443221 12333332211 11111 22333333 354
Q ss_pred EEE--eCCCccC----CCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHH-HHcCCceEEec
Q 014746 276 IIL--ARGNLGV----DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANA-VLDGSDAILLG 347 (419)
Q Consensus 276 ImI--argDLg~----elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~na-v~~G~D~vmLs 347 (419)
+.+ ...|+-. -...++.....+..++.|+++|..+.+ ..-+ ...++-+...+.+++.. ...|+|.+.|.
T Consensus 95 i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~---~d~~~~~~~~~~~~~~~~~~~g~~~i~l~ 171 (273)
T cd07941 95 VTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF---FDGYKANPEYALATLKAAAEAGADWLVLC 171 (273)
T ss_pred EEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec---cccCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 443 2333211 122244555557899999999998866 2211 11223334455555543 45699999886
Q ss_pred ccccCCCCHHHHHHHHHHHHHHH
Q 014746 348 AETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 348 ~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
+|.=...|.+.-++++.+.+..
T Consensus 172 -DT~G~~~P~~v~~lv~~l~~~~ 193 (273)
T cd07941 172 -DTNGGTLPHEIAEIVKEVRERL 193 (273)
T ss_pred -cCCCCCCHHHHHHHHHHHHHhC
Confidence 8888889998888777776654
No 188
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=68.44 E-value=84 Score=31.46 Aligned_cols=113 Identities=17% Similarity=0.315 Sum_probs=68.2
Q ss_pred ceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE--Ecccc---cccc--C
Q 014746 251 TQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV--TRVVD---SMTD--N 322 (419)
Q Consensus 251 ~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~--TqmLe---SM~~--~ 322 (419)
+++...+-...-++.+.+-++. .+.||+. |-.+++++=-..-+++++.|+++|.+|=. .++-. .... .
T Consensus 75 vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~ 150 (283)
T PRK07998 75 VPVSLHLDHGKTFEDVKQAVRAGFTSVMID----GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEAD 150 (283)
T ss_pred CCEEEECcCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccccc
Confidence 4455555444433333333332 3789994 23467766666679999999999999822 32211 1000 1
Q ss_pred CCcchhhHhHHHHHHH-cCCceEEecccccCCCC--HHHHHHHHHHHHHHH
Q 014746 323 LRPTRAEATDVANAVL-DGSDAILLGAETLRGLY--PVETISIVGKICAEA 370 (419)
Q Consensus 323 ~~PtraEv~Dv~nav~-~G~D~vmLs~ETa~G~y--P~eaV~~~~~I~~~a 370 (419)
..- ...++..++. -|+|++-.+--|+=|.| |---...+.+|.+..
T Consensus 151 ~~T---~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~ 198 (283)
T PRK07998 151 CKT---EPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS 198 (283)
T ss_pred ccC---CHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC
Confidence 111 2233455553 69999999999999999 554456777776654
No 189
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=67.97 E-value=1.5e+02 Score=30.34 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=94.6
Q ss_pred ccCHHHHHHHhhhcCC--cEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHh---hC----cEE
Q 014746 206 DKDKEVISTWGARNNI--DFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILH---EA----DGI 276 (419)
Q Consensus 206 e~D~~di~~~~l~~g~--d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~---~s----DgI 276 (419)
++|.+.|+ .+++.-- ..++-| =|.+..+++-.+..+.+ ..+++. ++.-++-+.++.. .. +-|
T Consensus 136 ~kD~evle-aale~~~g~~pLInS--at~en~~~i~~lA~~y~----~~Vva~--s~~Dln~ak~L~~~l~~~Gi~~edI 206 (319)
T PRK04452 136 EKDAEVLE-KVAEAAEGERCLLGS--AEEDNYKKIAAAAMAYG----HAVIAW--SPLDINLAKQLNILLTELGVPRERI 206 (319)
T ss_pred CCCHHHHH-HHHHHhCCCCCEEEE--CCHHHHHHHHHHHHHhC----CeEEEE--cHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 56888886 6677433 245555 34667777777776655 345555 3444555555444 22 567
Q ss_pred EEeCCCccCCCCchhHHHHHHHHHHHHH----HcCCcEEE-Ec-----cccccc-------cCCCcchh---hHhHHHHH
Q 014746 277 ILARGNLGVDLPPEKVFLFQKAALYKCN----MAGKPAVV-TR-----VVDSMT-------DNLRPTRA---EATDVANA 336 (419)
Q Consensus 277 mIargDLg~elg~e~v~~~qk~Ii~a~~----~~gkpvi~-Tq-----mLeSM~-------~~~~Ptra---Ev~Dv~na 336 (419)
++.++=.++.+|.+.....+.+|-.+|- ..|-|+|. +- .=|+.. ..++-.|+ |+.-...+
T Consensus 207 viDP~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~ 286 (319)
T PRK04452 207 VMDPTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTL 286 (319)
T ss_pred EEeCCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHH
Confidence 8999988888888877777777766664 45778776 22 112211 00111123 67777788
Q ss_pred HHcCCceEEecccccCCCCHHHHHHHHHHHHHH
Q 014746 337 VLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 337 v~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~ 369 (419)
+..|+|.++|. || ++|+++++++..
T Consensus 287 ~~~ga~i~vm~-------hp-~s~~~~~~~~~~ 311 (319)
T PRK04452 287 LLAGADIFMMR-------HP-ESVKTLKEIIDT 311 (319)
T ss_pred HHhcCcEEEEe-------CH-HHHHHHHHHHHH
Confidence 88999999997 67 799999888764
No 190
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=67.87 E-value=9.4 Score=38.91 Aligned_cols=46 Identities=11% Similarity=0.255 Sum_probs=38.4
Q ss_pred EecCCCCCCHHHHHHHHHcCC--CEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 34 GTLGPRSRSVEIISGCLNAGM--SVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 34 ~TiGp~~~~~~~i~~li~~Gm--~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
+.+|.+.++.+.+.+|+++|+ |+.=|..+||..+..+++|++||+.
T Consensus 90 ~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~ 137 (326)
T PRK05458 90 ISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH 137 (326)
T ss_pred EEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh
Confidence 345555567788999999966 9999999999999999998888873
No 191
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=67.77 E-value=59 Score=32.07 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=52.8
Q ss_pred HHhhhc-CCcEEEEec------CCCHHHHHHH-HHHHHhcCCCCCceEEEEec---CHHhHhhHHHHHhh-CcEEEEeCC
Q 014746 214 TWGARN-NIDFLSLSH------TRGAEDVRHA-RDFLSQLGDLGQTQIFAKIE---NTEGLTHFDEILHE-ADGIILARG 281 (419)
Q Consensus 214 ~~~l~~-g~d~I~lsf------V~saedv~~v-~~~l~~~~~~~~~~IiaKIE---t~~gv~nl~eI~~~-sDgImIarg 281 (419)
++.++. |+++|++.= -=|.++=.++ +...+..+ .++.||+-+- |.++++......+. +|++|+.+-
T Consensus 28 ~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~--~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P 105 (288)
T cd00954 28 DYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK--GKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITP 105 (288)
T ss_pred HHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--CCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 377788 999987642 2233333333 33333333 5678898884 45666665555554 599998655
Q ss_pred CccCCCCchhHHHHHHHHHHHHHHc-CCcEEE
Q 014746 282 NLGVDLPPEKVFLFQKAALYKCNMA-GKPAVV 312 (419)
Q Consensus 282 DLg~elg~e~v~~~qk~Ii~a~~~~-gkpvi~ 312 (419)
.... ..-+.+...-+.| |.+. +.|+++
T Consensus 106 ~y~~-~~~~~i~~~~~~v---~~a~~~lpi~i 133 (288)
T cd00954 106 FYYK-FSFEEIKDYYREI---IAAAASLPMII 133 (288)
T ss_pred CCCC-CCHHHHHHHHHHH---HHhcCCCCEEE
Confidence 4322 2223444333444 5556 788876
No 192
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=67.61 E-value=41 Score=32.61 Aligned_cols=108 Identities=17% Similarity=0.048 Sum_probs=67.7
Q ss_pred HhhhcCCcEEEE---------------ecCCCHHHHHHHHHHHHhcCCCC--CceEEEEecCH--------HhHhhHHHH
Q 014746 215 WGARNNIDFLSL---------------SHTRGAEDVRHARDFLSQLGDLG--QTQIFAKIENT--------EGLTHFDEI 269 (419)
Q Consensus 215 ~~l~~g~d~I~l---------------sfV~saedv~~v~~~l~~~~~~~--~~~IiaKIEt~--------~gv~nl~eI 269 (419)
...+.|+++|.+ +.+...+.+..++.....+. . +..|+|..++. ++++....-
T Consensus 92 ~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~--~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay 169 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD--DLPDFVIIARTDALLAGEEGLDEAIERAKAY 169 (243)
T ss_pred HHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh--ccCCeEEEEEcCchhccCCCHHHHHHHHHHH
Confidence 446799999999 55666666777776665554 4 78999996653 455666666
Q ss_pred Hhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCC-cchhhHhHHHHHHHcCCceEEec
Q 014746 270 LHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLR-PTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 270 ~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~-PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.++ +|++|+-.-. -.+.+-..+++...|+.+. +..++. ++..|. -..|+..+...
T Consensus 170 ~~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~~-----~~~~~~~~~~~~l------~~lG~~~v~~~ 226 (243)
T cd00377 170 AEAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNVN-----MTPGGNLLTVAEL------AELGVRRVSYG 226 (243)
T ss_pred HHcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEEE-----ecCCCCCCCHHHH------HHCCCeEEEEC
Confidence 656 7999984222 1145555666688998861 111221 444443 33488877664
No 193
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=67.17 E-value=11 Score=38.25 Aligned_cols=49 Identities=10% Similarity=0.147 Sum_probs=43.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHcC--CCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 31 KIVGTLGPRSRSVEIISGCLNAG--MSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 31 kIi~TiGp~~~~~~~i~~li~~G--m~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
-..+.+|-..++.+.+..|+++| .++.=+..|||......++++.+|+.
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~ 134 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTH 134 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHh
Confidence 46777888888889999999999 69999999999999888888888864
No 194
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=66.93 E-value=1.4e+02 Score=29.54 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=78.6
Q ss_pred cceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEe---------------------cCCCH----HHHHHHHHHHHh
Q 014746 190 YTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLS---------------------HTRGA----EDVRHARDFLSQ 244 (419)
Q Consensus 190 Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~ls---------------------fV~sa----edv~~v~~~l~~ 244 (419)
+|+.|++--.--|.+..+..+.++ +..+.|++++..- ++++- ..+....+.+..
T Consensus 6 ~g~~l~npi~~aag~~~~~~~~~~-~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~ 84 (300)
T TIGR01037 6 FGIRFKNPLILASGIMGSGVESLR-RIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKP 84 (300)
T ss_pred CCEECCCCCEeCCcCCCCCHHHHH-HHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHH
Confidence 456666543323323334555565 4567799988871 11110 012222222322
Q ss_pred cCCCCCceEEEEe--cCHHhHhhHHHHHhh----CcEEEEeCC---C--ccCCCCchhHHHHHHHHHHHHHHc-CCcEEE
Q 014746 245 LGDLGQTQIFAKI--ENTEGLTHFDEILHE----ADGIILARG---N--LGVDLPPEKVFLFQKAALYKCNMA-GKPAVV 312 (419)
Q Consensus 245 ~~~~~~~~IiaKI--Et~~gv~nl~eI~~~----sDgImIarg---D--Lg~elg~e~v~~~qk~Ii~a~~~~-gkpvi~ 312 (419)
........++++| .+++.+..+-++++. +|+|=+-=| - -+.+++ .-+..-.+++++.+++ ++|+.+
T Consensus 85 ~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~--~~~~~~~eiv~~vr~~~~~pv~v 162 (300)
T TIGR01037 85 VREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIG--QDPELSADVVKAVKDKTDVPVFA 162 (300)
T ss_pred HhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccc--cCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111235799999 677777777777662 577766211 0 111121 2234446777777765 899987
Q ss_pred -EccccccccCCCcchhhHhHHHH-HHHcCCceEEec
Q 014746 313 -TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLG 347 (419)
Q Consensus 313 -TqmLeSM~~~~~PtraEv~Dv~n-av~~G~D~vmLs 347 (419)
. .|+-.+..+++. +...|+|++.++
T Consensus 163 Ki----------~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 163 KL----------SPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred EC----------CCChhhHHHHHHHHHHcCCCEEEEE
Confidence 3 244455666664 456799999886
No 195
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=66.64 E-value=1.1e+02 Score=29.70 Aligned_cols=121 Identities=12% Similarity=-0.009 Sum_probs=66.7
Q ss_pred CccCHHHHHHHhhhcCCcEEEEec----------------CCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHH
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSH----------------TRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDE 268 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsf----------------V~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~e 268 (419)
|..+...+.+. +..++|+|=+.+ .++++-+.++.+.+.+ .+.+|.+||=-----.+..+
T Consensus 78 ~~ee~~~~a~~-v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~----~~~PVsvKiR~~~~~~~~~~ 152 (231)
T TIGR00736 78 DLEEAYDVLLT-IAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE----LNKPIFVKIRGNCIPLDELI 152 (231)
T ss_pred CHHHHHHHHHH-HhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc----CCCcEEEEeCCCCCcchHHH
Confidence 44455555433 566888887763 3466666666666653 35789999853111112223
Q ss_pred HHh----h-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHc-C-CcEEEEccccccccCCCcchhhHhHHHHHHHcCC
Q 014746 269 ILH----E-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMA-G-KPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGS 341 (419)
Q Consensus 269 I~~----~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~-g-kpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~ 341 (419)
+++ + +|+|.|-.+.- | -+.+.-+.++..+++ + +|+|- ++..-|. .|+...+..|+
T Consensus 153 ~a~~l~~aGad~i~Vd~~~~----g---~~~a~~~~I~~i~~~~~~ipIIg--------NGgI~s~---eda~e~l~~GA 214 (231)
T TIGR00736 153 DALNLVDDGFDGIHVDAMYP----G---KPYADMDLLKILSEEFNDKIIIG--------NNSIDDI---ESAKEMLKAGA 214 (231)
T ss_pred HHHHHHHcCCCEEEEeeCCC----C---CchhhHHHHHHHHHhcCCCcEEE--------ECCcCCH---HHHHHHHHhCC
Confidence 333 2 59998842211 1 122333334444443 4 89886 2334444 45555566799
Q ss_pred ceEEecc
Q 014746 342 DAILLGA 348 (419)
Q Consensus 342 D~vmLs~ 348 (419)
|+||+..
T Consensus 215 d~VmvgR 221 (231)
T TIGR00736 215 DFVSVAR 221 (231)
T ss_pred CeEEEcH
Confidence 9999975
No 196
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.62 E-value=93 Score=29.67 Aligned_cols=106 Identities=17% Similarity=0.212 Sum_probs=69.0
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhC-c--EEEEeCCC--------ccCCCCch--
Q 014746 224 LSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEA-D--GIILARGN--------LGVDLPPE-- 290 (419)
Q Consensus 224 I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~s-D--gImIargD--------Lg~elg~e-- 290 (419)
+.+=...++++...+.+.|-+.|. . .+=.-.-|+.+++.+.++.+.. | .++||-|= ...+.|.+
T Consensus 16 i~vir~~~~~~a~~~~~al~~~Gi--~-~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 16 VAVVRGESKEEALKISLAVIKGGI--K-AIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCC--C-EEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 444456788888888888876652 1 2223335888888888887764 2 47787762 11111110
Q ss_pred hHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 291 KVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 291 ~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
--|.....+++.|+++|+|++= +. | .+++..|...|+|.+-+
T Consensus 93 vsP~~~~~v~~~~~~~~i~~iPG~~-----------T---~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 93 VSPSFNRETAKICNLYQIPYLPGCM-----------T---VTEIVTALEAGSEIVKL 135 (213)
T ss_pred ECCCCCHHHHHHHHHcCCCEECCcC-----------C---HHHHHHHHHcCCCEEEE
Confidence 1244457899999999999985 33 2 34557777899999998
No 197
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=66.45 E-value=68 Score=32.00 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=52.0
Q ss_pred HHhhhcCCcEEEEe------cCCCHHHHHHH-HHHHHhcCCCCCceEEEEec--CHHhHhhHHHHHhh-CcEEEEeCCCc
Q 014746 214 TWGARNNIDFLSLS------HTRGAEDVRHA-RDFLSQLGDLGQTQIFAKIE--NTEGLTHFDEILHE-ADGIILARGNL 283 (419)
Q Consensus 214 ~~~l~~g~d~I~ls------fV~saedv~~v-~~~l~~~~~~~~~~IiaKIE--t~~gv~nl~eI~~~-sDgImIargDL 283 (419)
+|.++.|+|+|.+. +--|.++=.++ +...+..+ .++.+|+-+- |.++++.+....+. +|++|+.+--+
T Consensus 35 ~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~--~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 35 EWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA--GRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--CCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 47788999999873 22344444444 33444444 5677888773 33344433333333 59999977654
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 284 GVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 284 g~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
.. ..-+.+....+.+ |.+.+.|+++
T Consensus 113 ~~-~~~~~i~~~f~~v---a~~~~lpi~l 137 (303)
T PRK03620 113 TE-APQEGLAAHVEAV---CKSTDLGVIV 137 (303)
T ss_pred CC-CCHHHHHHHHHHH---HHhCCCCEEE
Confidence 31 2223344444444 5556888876
No 198
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=66.04 E-value=1.6e+02 Score=30.04 Aligned_cols=146 Identities=11% Similarity=0.046 Sum_probs=88.0
Q ss_pred CccCHHHHHHHhhhcCCcEEEE---------ecC-C--CHHHHHHHHHHHHhcCCCCCceEEEEe----cCHHhHhhHHH
Q 014746 205 TDKDKEVISTWGARNNIDFLSL---------SHT-R--GAEDVRHARDFLSQLGDLGQTQIFAKI----ENTEGLTHFDE 268 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~l---------sfV-~--saedv~~v~~~l~~~~~~~~~~IiaKI----Et~~gv~nl~e 268 (419)
|..++..+.....+.|+|.|=+ ||. . ...+.+.++.+.... .+.++.+.+ -+.+. ++.
T Consensus 23 ~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~---~~~~~~~ll~pg~~~~~d---l~~ 96 (337)
T PRK08195 23 TLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV---KQAKIAALLLPGIGTVDD---LKM 96 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC---CCCEEEEEeccCcccHHH---HHH
Confidence 5666666655656789999988 343 1 111333333333221 334555543 23322 222
Q ss_pred HHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHH-HHcCCceEEe
Q 014746 269 ILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANA-VLDGSDAILL 346 (419)
Q Consensus 269 I~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~na-v~~G~D~vmL 346 (419)
-.+. .|.|-|+- ...+.. .-++.+..++++|.-+..+-| ..+..+.+++.+.+.. ...|+|++-+
T Consensus 97 a~~~gvd~iri~~-------~~~e~~-~~~~~i~~ak~~G~~v~~~l~-----~a~~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 97 AYDAGVRVVRVAT-------HCTEAD-VSEQHIGLARELGMDTVGFLM-----MSHMAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred HHHcCCCEEEEEE-------ecchHH-HHHHHHHHHHHCCCeEEEEEE-----eccCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 2222 47766541 222222 357889999999988765211 1245677888777754 4569999988
Q ss_pred cccccCCCCHHHHHHHHHHHHHHH
Q 014746 347 GAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 347 s~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
. +|+=.-+|.+.-+..+.+-++.
T Consensus 164 ~-DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 164 V-DSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred C-CCCCCCCHHHHHHHHHHHHHhc
Confidence 7 8888889998888888777665
No 199
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=65.83 E-value=66 Score=31.66 Aligned_cols=93 Identities=15% Similarity=0.226 Sum_probs=53.6
Q ss_pred HHhhhcCCcEEEEe------cCCCHHHHHHHHH-HHHhcCCCCCceEEEEec---CHHhHhhHHHHHhh-CcEEEEeCCC
Q 014746 214 TWGARNNIDFLSLS------HTRGAEDVRHARD-FLSQLGDLGQTQIFAKIE---NTEGLTHFDEILHE-ADGIILARGN 282 (419)
Q Consensus 214 ~~~l~~g~d~I~ls------fV~saedv~~v~~-~l~~~~~~~~~~IiaKIE---t~~gv~nl~eI~~~-sDgImIargD 282 (419)
.+.++.|+|+|++. +-=|.++=.++-+ ..+..+ .++.|++-+= |.++++....-.+. +|++|+.+--
T Consensus 26 ~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~--~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 26 DFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN--GRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPY 103 (285)
T ss_pred HHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC--CCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 37788999999874 3334444444443 343334 5678888883 34555544444443 5999997654
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
.. ..+-+.+...-+.| |.+.+.|+++
T Consensus 104 y~-~~~~~~i~~~~~~i---~~~~~~pi~l 129 (285)
T TIGR00674 104 YN-KPTQEGLYQHFKAI---AEEVDLPIIL 129 (285)
T ss_pred CC-CCCHHHHHHHHHHH---HhcCCCCEEE
Confidence 32 12223444444555 4445788876
No 200
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.29 E-value=52 Score=31.74 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=69.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh----CcEEEEeCCC--------ccCCCCch
Q 014746 223 FLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE----ADGIILARGN--------LGVDLPPE 290 (419)
Q Consensus 223 ~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~----sDgImIargD--------Lg~elg~e 290 (419)
.|.+=...++++...+.+.|-+.|. ..+=.-.-|+.+++.++++.+. .+.++||-|= ..++.|.+
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi---~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~ 93 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGA---RVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGAN 93 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCC---CEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCC
Confidence 3444456788888888888877652 1233445678888888877633 2457777662 12222211
Q ss_pred --hHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 291 --KVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 291 --~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
--|..-..+++.|+++|+|++= ..- =.+++..|...|+|.+=|-
T Consensus 94 FiVsP~~~~~v~~~~~~~~i~~iP----------G~~---TpsEi~~A~~~Ga~~vKlF 139 (222)
T PRK07114 94 FIVTPLFNPDIAKVCNRRKVPYSP----------GCG---SLSEIGYAEELGCEIVKLF 139 (222)
T ss_pred EEECCCCCHHHHHHHHHcCCCEeC----------CCC---CHHHHHHHHHCCCCEEEEC
Confidence 1233447799999999999873 222 2356678888899998885
No 201
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=64.99 E-value=13 Score=40.04 Aligned_cols=98 Identities=21% Similarity=0.233 Sum_probs=70.0
Q ss_pred cEEEEecCCCHHHHHHHHHHHHhc----CC-CCCceEEEEecCHHhHhhHHHHHhhC-c---EEEEeCCCccCCC-----
Q 014746 222 DFLSLSHTRGAEDVRHARDFLSQL----GD-LGQTQIFAKIENTEGLTHFDEILHEA-D---GIILARGNLGVDL----- 287 (419)
Q Consensus 222 d~I~lsfV~saedv~~v~~~l~~~----~~-~~~~~IiaKIEt~~gv~nl~eI~~~s-D---gImIargDLg~el----- 287 (419)
-|+.+|+.++++++.-.-+.+... |. ...+++-.+|||..+.-|+++|+... | ++=-||=|..-++
T Consensus 220 ~YfylPKm~~p~Ea~f~ndvf~rvEd~LGLprgTiK~~vl~Ee~~a~~~m~eii~~~rer~v~lN~GrwDyigs~Ik~~~ 299 (545)
T COG2225 220 PYFYLPKMEGPEEAAFWNDVFSRVEDTLGLPRGTIKATLLIEERRATLNLDEILYALRDRVVGLNTGRWDYIGSEIKTLM 299 (545)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCceeEeeehhhhhhhhhHHHHHHHHHhhhccccccchhhhhhHHHHhh
Confidence 688999999999998887776532 22 13578999999999999999999874 3 2222454432111
Q ss_pred -------------CchhHHHHHHHHHHHHHHcCCcEEE-Ecccccc
Q 014746 288 -------------PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSM 319 (419)
Q Consensus 288 -------------g~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM 319 (419)
..+.+...++..+..|.++|.+..- .|..--|
T Consensus 300 ~~~~~p~R~~~tm~~p~m~AY~~~nv~~c~~~G~~a~Ggmaa~~~~ 345 (545)
T COG2225 300 EDAVPPDRKGVTMTSPWMGAYEKLNVDTCHKRGAFAMGGMAAGIPM 345 (545)
T ss_pred hhcCCCChhhhhhcCHHHHHHHHHhHHHHHhcCCcccccchhcCCc
Confidence 1135777789999999999997766 6655434
No 202
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=64.94 E-value=1e+02 Score=31.12 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=64.0
Q ss_pred CCcEEEEec----C------CCHHHHHHHHHHHHhcC--CCCCceEEEEecCHHhHhhHHHHHhh-----CcEEEE-eCC
Q 014746 220 NIDFLSLSH----T------RGAEDVRHARDFLSQLG--DLGQTQIFAKIENTEGLTHFDEILHE-----ADGIIL-ARG 281 (419)
Q Consensus 220 g~d~I~lsf----V------~saedv~~v~~~l~~~~--~~~~~~IiaKIEt~~gv~nl~eI~~~-----sDgImI-arg 281 (419)
.+|+|-+.+ + +.++.+.++.+.+.+.- ...++.|++|+---...+++.++++. +|+|.+ +|-
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 489887765 1 22355555544443321 00357899999422222344445443 488875 321
Q ss_pred ----C-----ccCCC-Cc---hhHHHHHHHHHHHHHHc--CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEE
Q 014746 282 ----N-----LGVDL-PP---EKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAIL 345 (419)
Q Consensus 282 ----D-----Lg~el-g~---e~v~~~qk~Ii~a~~~~--gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vm 345 (419)
+ +.... |+ ...+...+.+-...+.. ++|++. ..+ - ...|+..++..|+|++|
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI---------~---t~~da~e~l~aGAd~V~ 307 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGI---------S---SGEDAYEKIRAGASLVQ 307 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCC---------C---CHHHHHHHHHcCCCHHh
Confidence 1 11111 11 22334445555555555 578886 442 2 34577888888999999
Q ss_pred ecccc
Q 014746 346 LGAET 350 (419)
Q Consensus 346 Ls~ET 350 (419)
+....
T Consensus 308 vg~~~ 312 (327)
T cd04738 308 LYTGL 312 (327)
T ss_pred ccHHH
Confidence 98443
No 203
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=64.69 E-value=16 Score=39.38 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=44.3
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 29 MTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 29 ~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
+-.+=+.+|+.-+..+-.+.|+++|+|+.=+..+||...+..+++++||+.
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~ 286 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKT 286 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHh
Confidence 455666789888889999999999999999999999998888888888873
No 204
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=64.43 E-value=1e+02 Score=28.57 Aligned_cols=119 Identities=19% Similarity=0.142 Sum_probs=62.7
Q ss_pred cCHHHHHHHhhhcCCcEEEEecCC-CHHHH-HHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh--CcEEEEeCCC
Q 014746 207 KDKEVISTWGARNNIDFLSLSHTR-GAEDV-RHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE--ADGIILARGN 282 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsfV~-saedv-~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~--sDgImIargD 282 (419)
.+.++++ .+.+.|+|+|.+=|.. |+..+ .+....+.+.-. .++.-++-+-+.. ++.+.+++.. .|+|-++-.|
T Consensus 7 ~~~ed~~-~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~-~~~~~V~v~vn~~-~~~i~~ia~~~~~d~Vqlhg~e 83 (203)
T cd00405 7 TTLEDAL-AAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALP-PFVKRVGVFVNED-LEEILEIAEELGLDVVQLHGDE 83 (203)
T ss_pred CCHHHHH-HHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCC-CCCcEEEEEeCCC-HHHHHHHHHhcCCCEEEECCCC
Confidence 3567886 7799999999998854 55555 332222322110 2223333333322 5556666665 4899987544
Q ss_pred ccCCCCchhHHHHHHHHHHHHHH-cCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEeccccc
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETL 351 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~-~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa 351 (419)
+.+.+ ...++ .|.+++. -. ..+..+ .+...+...|+|.+++-..|.
T Consensus 84 -----~~~~~--------~~l~~~~~~~~i~~i~---------~~~~~~-~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 84 -----SPEYC--------AQLRARLGLPVIKAIR---------VKDEED-LEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred -----CHHHH--------HHHHhhcCCcEEEEEe---------cCChhh-HHHhhhccccCCEEEEcCCCC
Confidence 11111 22222 3777662 11 111111 122455668999999965554
No 205
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=64.02 E-value=44 Score=33.72 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=47.2
Q ss_pred cccccccCCCCCCCCCCCeEEEEecCCCCCCH----HHHHHHHHcCCCEEEEeccCCC-----HHHHHHHHHHHHHHHHh
Q 014746 12 IRMASILEPSKPTFFPAMTKIVGTLGPRSRSV----EIISGCLNAGMSVARFDFSWGD-----TAYHQETLENLKIAIKS 82 (419)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~tkIi~TiGp~~~~~----~~i~~li~~Gm~v~RiN~SHg~-----~e~~~~~i~~ir~a~~~ 82 (419)
.++.+++.... ..+....+|+|....++ +..+++.++|.+.+.+...|+. .+.-.+.++.+|++
T Consensus 113 ~pl~~llGg~~----~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~--- 185 (357)
T cd03316 113 VPVYKLLGGKV----RDRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA--- 185 (357)
T ss_pred CcHhhccCCcc----CCceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh---
Confidence 34555555331 13455667776654233 3556678899999999999987 56556666666654
Q ss_pred cCCceEEEEec
Q 014746 83 TKKLCAVMLDT 93 (419)
Q Consensus 83 ~~~~i~Il~Dl 93 (419)
.|..+.+++|.
T Consensus 186 ~g~~~~l~vDa 196 (357)
T cd03316 186 VGPDVDLMVDA 196 (357)
T ss_pred hCCCCEEEEEC
Confidence 45445666665
No 206
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=63.96 E-value=1e+02 Score=30.62 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=59.2
Q ss_pred HhhhcCCcEEEEecCCC-------HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEe-CCCccC
Q 014746 215 WGARNNIDFLSLSHTRG-------AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILA-RGNLGV 285 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~s-------aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIa-rgDLg~ 285 (419)
.+.+.|+|+|.+.+=.. .+.++++++.+ ..+++.|.= ...+......+. +|+|.+. +| |.
T Consensus 137 ~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~-------~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g--G~ 205 (299)
T cd02809 137 RAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW-------KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG--GR 205 (299)
T ss_pred HHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhc-------CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC--CC
Confidence 55678999888754222 24555555432 357888831 223333333333 6998873 33 22
Q ss_pred CC--CchhHHHHHHHHHHHHHHc--CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecc
Q 014746 286 DL--PPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (419)
Q Consensus 286 el--g~e~v~~~qk~Ii~a~~~~--gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ 348 (419)
.+ +...+ ..+.+.++.. ..|+|. ..+ - .-.|+..++..|+|+||+..
T Consensus 206 ~~~~g~~~~----~~l~~i~~~~~~~ipvia~GGI---------~---~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 206 QLDGAPATI----DALPEIVAAVGGRIEVLLDGGI---------R---RGTDVLKALALGADAVLIGR 257 (299)
T ss_pred CCCCCcCHH----HHHHHHHHHhcCCCeEEEeCCC---------C---CHHHHHHHHHcCCCEEEEcH
Confidence 22 22111 1122222223 489887 542 2 24688999999999999974
No 207
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=63.92 E-value=1.8e+02 Score=30.01 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=54.5
Q ss_pred CccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhH-----------hhHHHHHhh-
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGL-----------THFDEILHE- 272 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv-----------~nl~eI~~~- 272 (419)
.-.|.+.+.+.+.+.|+|.+++++ -.++.+..... .++.+|.|+-+...+ -..++-++.
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~~-------G~l~~~~~~~~--~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLG 159 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVASTL-------GVLEAVARKYA--HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLG 159 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeCH-------HHHHhcccccc--CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCC
Confidence 334666544577889999999982 22222222222 356788888764444 224554444
Q ss_pred CcEEEE--eCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 273 ADGIIL--ARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 273 sDgImI--argDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+|+|-+ -.|. +.- .++..--.+++..|++.|.|++.
T Consensus 160 AdAV~~tvy~Gs---~~E-~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 160 AVAVGATIYFGS---EES-RRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred CCEEEEEEecCC---HHH-HHHHHHHHHHHHHHHHhCCCEEE
Confidence 565543 3331 100 12333337799999999999886
No 208
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=63.56 E-value=22 Score=38.08 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=42.8
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHH
Q 014746 28 AMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKI 78 (419)
Q Consensus 28 ~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~ 78 (419)
.+.++-+-+|+.-.+.+.++.|+++|+++.-++-+||..+.+.+.++++|+
T Consensus 215 g~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 215 GRLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CCEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 356677777765567899999999999999999999999888888888776
No 209
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=63.01 E-value=80 Score=30.75 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=50.3
Q ss_pred CcEEEEe-CCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHH-HHHHcCCceEEeccc
Q 014746 273 ADGIILA-RGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVA-NAVLDGSDAILLGAE 349 (419)
Q Consensus 273 sDgImIa-rgDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~-nav~~G~D~vmLs~E 349 (419)
.||+++. -.=-+..+..++-..+.+.+++.++ -..|+++ +. .++-.|..+.+ .|-..|+|++|+..=
T Consensus 32 v~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 32 VDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGVG---------ANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred CCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEecC---------CccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 5788763 1112233333444444444444442 2467776 43 34445555555 444559999999754
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhc
Q 014746 350 TLRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 350 Ta~G~yP~eaV~~~~~I~~~aE~ 372 (419)
.-...-+-+.+++...|++....
T Consensus 102 ~y~~~~~~~~~~~~~~ia~~~~~ 124 (281)
T cd00408 102 YYNKPSQEGIVAHFKAVADASDL 124 (281)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCC
Confidence 33333457888888888887543
No 210
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=62.94 E-value=48 Score=35.01 Aligned_cols=174 Identities=18% Similarity=0.206 Sum_probs=97.4
Q ss_pred CccCHHHHHHHhhhcCCcEEEEe--cCCCHHHHHHHHHHHHhcCCCCCceEEE-EecCHHhHhhHHHHHhhCcEEEEeCC
Q 014746 205 TDKDKEVISTWGARNNIDFLSLS--HTRGAEDVRHARDFLSQLGDLGQTQIFA-KIENTEGLTHFDEILHEADGIILARG 281 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~ls--fV~saedv~~v~~~l~~~~~~~~~~Iia-KIEt~~gv~nl~eI~~~sDgImIarg 281 (419)
-+.|+..+. .....|+|+|++- -=+|--++..+ +++++.- .++.||+ ..=|.+=.+|| |.+-+||+=||=|
T Consensus 249 re~dK~rl~-ll~~aGvdvviLDSSqGnS~~qiemi-k~iK~~y--P~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMG 322 (503)
T KOG2550|consen 249 RDDDKERLD-LLVQAGVDVVILDSSQGNSIYQLEMI-KYIKETY--PDLQIIAGNVVTKEQAANL--IAAGADGLRVGMG 322 (503)
T ss_pred ccchhHHHH-HhhhcCCcEEEEecCCCcchhHHHHH-HHHHhhC--CCceeeccceeeHHHHHHH--HHccCceeEeccc
Confidence 456777775 6689999999874 33455555554 3555544 5566554 23344333333 3444899988655
Q ss_pred CccCCCCch--hHH----HHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecc----cc
Q 014746 282 NLGVDLPPE--KVF----LFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA----ET 350 (419)
Q Consensus 282 DLg~elg~e--~v~----~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~----ET 350 (419)
-=++=+--+ .+- .+--++.+.|+..|.|||- .. -.-+.+++.|+..|++.||+.+ -|
T Consensus 323 sGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGG------------iq~~Ghi~KAl~lGAstVMmG~lLAgtT 390 (503)
T KOG2550|consen 323 SGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGG------------IQNVGHVVKALGLGASTVMMGGLLAGTT 390 (503)
T ss_pred cCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCC------------cCccchhHhhhhcCchhheecceeeeee
Confidence 322221111 111 1224577889999999997 43 1245678899999999998742 11
Q ss_pred -cCCCCHHHHHHHHHHHHHHHhcCCcChHHHHHHHHHHHHHCCCCCCCCEEEEEeec
Q 014746 351 -LRGLYPVETISIVGKICAEAKTTNATSESALKVALDYGKAHGVIKSHDRVVICQKV 406 (419)
Q Consensus 351 -a~G~yP~eaV~~~~~I~~~aE~~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~ 406 (419)
|-|.|-..==+.+.+- ....+. .|++.+..+.++..+|.+-+.+|.
T Consensus 391 EapGeyf~~~g~rlKky-----rGMGSl-----~AM~~~s~~rY~~e~dkvkiAQGV 437 (503)
T KOG2550|consen 391 EAPGEYFFRDGVRLKKY-----RGMGSL-----DAMESSSQKRYFSEVDKVKIAQGV 437 (503)
T ss_pred ccCcceeeecCeeehhc-----cCcchH-----HHHhhhhhhccccccceEeeccCc
Confidence 2233310000000000 000122 233466677788899999988776
No 211
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=62.83 E-value=42 Score=34.61 Aligned_cols=91 Identities=21% Similarity=0.283 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCceEEEE-ecCHHhHhhHHHHHhh-CcEEEEe-CCCccCCCCchhHHHHHHHHHHHHHHc-
Q 014746 231 GAEDVRHARDFLSQLGDLGQTQIFAK-IENTEGLTHFDEILHE-ADGIILA-RGNLGVDLPPEKVFLFQKAALYKCNMA- 306 (419)
Q Consensus 231 saedv~~v~~~l~~~~~~~~~~IiaK-IEt~~gv~nl~eI~~~-sDgImIa-rgDLg~elg~e~v~~~qk~Ii~a~~~~- 306 (419)
+.+++..+++.. +.+|++| |-++ +......+. +|+|.+. -| |..+.- .+.....+...+++.
T Consensus 209 ~~~~l~~lr~~~-------~~PvivKgv~~~---~dA~~a~~~G~d~I~vsnhG--Gr~ld~--~~~~~~~l~~i~~a~~ 274 (351)
T cd04737 209 SPADIEFIAKIS-------GLPVIVKGIQSP---EDADVAINAGADGIWVSNHG--GRQLDG--GPASFDSLPEIAEAVN 274 (351)
T ss_pred CHHHHHHHHHHh-------CCcEEEecCCCH---HHHHHHHHcCCCEEEEeCCC--CccCCC--CchHHHHHHHHHHHhC
Confidence 788888888753 3679999 3333 223333333 6999983 12 222210 011111222223333
Q ss_pred -CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 307 -GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 307 -gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
..|+|. ..+- .-.|+..++..|+|+||+.
T Consensus 275 ~~i~vi~dGGIr------------~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 275 HRVPIIFDSGVR------------RGEHVFKALASGADAVAVG 305 (351)
T ss_pred CCCeEEEECCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 488887 5422 3579999999999999986
No 212
>PRK08417 dihydroorotase; Provisional
Probab=62.82 E-value=1.9e+02 Score=29.76 Aligned_cols=106 Identities=10% Similarity=0.109 Sum_probs=58.3
Q ss_pred ecCCCCCccCHHHHHHHhhhcCCcEEEE-----ecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-
Q 014746 199 IDLPTLTDKDKEVISTWGARNNIDFLSL-----SHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE- 272 (419)
Q Consensus 199 ~~lp~lte~D~~di~~~~l~~g~d~I~l-----sfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~- 272 (419)
+.-|..+..|.+...+.|+..|+-.|+. |.+.+++.++...+..++.. ........-....+.+..+++..+.
T Consensus 39 ~~~~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~G 117 (386)
T PRK08417 39 LKNDSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELP-MQIFPSIRALDEDGKLSNIATLLKKG 117 (386)
T ss_pred eCCCCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccC-CcEEEEEEEECCCccHHHHHHHHHCC
Confidence 3445555556555555778889887765 34556666666655543210 0112222222344456666666533
Q ss_pred CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-Ec
Q 014746 273 ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TR 314 (419)
Q Consensus 273 sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-Tq 314 (419)
++++.+. + .. -.....+++..++..|+|+.+ .+
T Consensus 118 v~~~k~~-~------~~--~~~~l~~~~~~a~~~g~~V~~HaE 151 (386)
T PRK08417 118 AKALELS-S------DL--DANLLKVIAQYAKMLDVPIFCRCE 151 (386)
T ss_pred CEEEECC-C------CC--CHHHHHHHHHHHHHcCCEEEEeCC
Confidence 3554431 1 11 133456677888899999998 54
No 213
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=62.67 E-value=1.1e+02 Score=27.20 Aligned_cols=119 Identities=17% Similarity=0.055 Sum_probs=63.7
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHh-hCcEEEEeCCCc---c----CC
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILH-EADGIILARGNL---G----VD 286 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~-~sDgImIargDL---g----~e 286 (419)
.+.+.|+|++.++.-.. ....++... + ....+-+-+.|.+- +.+... -+|.+++++..= . ..
T Consensus 67 ~a~~~g~~~vh~~~~~~--~~~~~~~~~---~--~~~~~g~~~~t~~~---~~~~~~~g~d~i~~~~~~~~~~~~~~~~~ 136 (196)
T cd00564 67 LALAVGADGVHLGQDDL--PVAEARALL---G--PDLIIGVSTHSLEE---ALRAEELGADYVGFGPVFPTPTKPGAGPP 136 (196)
T ss_pred HHHHcCCCEEecCcccC--CHHHHHHHc---C--CCCEEEeeCCCHHH---HHHHhhcCCCEEEECCccCCCCCCCCCCC
Confidence 45789999998886332 233333332 1 23444444555433 233333 379999875421 1 12
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHH
Q 014746 287 LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (419)
Q Consensus 287 lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~ 363 (419)
.+++.+.. .+....+|++. .. .+.. ++..+...|+|++.+.+--..-.-|.++++.+
T Consensus 137 ~~~~~~~~-------~~~~~~~pv~a~GG----------i~~~---~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 137 LGLELLRE-------IAELVEIPVVAIGG----------ITPE---NAAEVLAAGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCHHHHHH-------HHHhCCCCEEEECC----------CCHH---HHHHHHHcCCCEEEEehHhhcCCCHHHHHHHH
Confidence 22222222 22235789887 43 2333 44555667999998875443334577776655
No 214
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=62.66 E-value=1.5e+02 Score=30.99 Aligned_cols=130 Identities=14% Similarity=0.126 Sum_probs=72.3
Q ss_pred cCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCC-CHHHHHHHHHHHHhcCCCCCceEEEEecCHH-hHhhHHHHHhh
Q 014746 195 SQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTR-GAEDVRHARDFLSQLGDLGQTQIFAKIENTE-GLTHFDEILHE 272 (419)
Q Consensus 195 p~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~-saedv~~v~~~l~~~~~~~~~~IiaKIEt~~-gv~nl~eI~~~ 272 (419)
|-..+-+..++..+...+...+++.|+++|-..+-. +.+..+.++++....+ ...++.-+-... +-..++..+++
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~---~~~ii~D~kl~d~g~~~v~~a~~a 80 (430)
T PRK07028 4 PILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP---DHTIVADMKTMDTGAIEVEMAAKA 80 (430)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC---CCEEEEEeeeccchHHHHHHHHHc
Confidence 334444445555555555446688999999763212 2445556665554432 334543322221 22255555554
Q ss_pred -CcEEEE-eCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 273 -ADGIIL-ARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 273 -sDgImI-argDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+|++.+ +-.| ....+.++..|+++|++++. .- + .+|. +..+..+...|+|.+.+.
T Consensus 81 GAdgV~v~g~~~----------~~~~~~~i~~a~~~G~~~~~g~~-------s-~~t~--~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 81 GADIVCILGLAD----------DSTIEDAVRAARKYGVRLMADLI-------N-VPDP--VKRAVELEELGVDYINVH 138 (430)
T ss_pred CCCEEEEecCCC----------hHHHHHHHHHHHHcCCEEEEEec-------C-CCCH--HHHHHHHHhcCCCEEEEE
Confidence 698886 4322 01136788899999999885 21 1 1222 233466677899999765
No 215
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=62.46 E-value=1.7e+02 Score=31.04 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=65.6
Q ss_pred HHHHHHhhhcCCcEEEEec-CCCHHHHHHHHHHHHhcCC--------CCCceEEEEecCHHhHhhH---------HHHHh
Q 014746 210 EVISTWGARNNIDFLSLSH-TRGAEDVRHARDFLSQLGD--------LGQTQIFAKIENTEGLTHF---------DEILH 271 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~lsf-V~saedv~~v~~~l~~~~~--------~~~~~IiaKIEt~~gv~nl---------~eI~~ 271 (419)
+.+. ..++.|+..|..|. ......+...+ .+|. ...-.|++|+-+++-.... +.+.+
T Consensus 86 ~~v~-l~le~gV~~ve~sa~~~~~p~~~~~r----~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~ 160 (418)
T cd04742 86 GLVD-LFLRHGVRVVEASAFMQLTPALVRYR----AKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLA 160 (418)
T ss_pred HHHH-HHHHcCCCEEEeccccCCCcchhhHH----hcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHH
Confidence 3454 66899999888874 33222332222 2221 0113599999776544111 22222
Q ss_pred h----------------CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHc--------CCcEEE-EccccccccCCCcc
Q 014746 272 E----------------ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMA--------GKPAVV-TRVVDSMTDNLRPT 326 (419)
Q Consensus 272 ~----------------sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~--------gkpvi~-TqmLeSM~~~~~Pt 326 (419)
. +|.|.+. .|=|=+.+-......-..|...+.+. .+|||. ..+-
T Consensus 161 ~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~---------- 229 (418)
T cd04742 161 EGKITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG---------- 229 (418)
T ss_pred cCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC----------
Confidence 1 5888887 67666655322222222233332222 488887 5522
Q ss_pred hhhHhHHHHHHHcCCceEEec
Q 014746 327 RAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 327 raEv~Dv~nav~~G~D~vmLs 347 (419)
.-.+++.|+..|+|++.+.
T Consensus 230 --tg~~vaAA~alGAd~V~~G 248 (418)
T cd04742 230 --TPEAAAAAFALGADFIVTG 248 (418)
T ss_pred --CHHHHHHHHHcCCcEEeec
Confidence 3356788999999999884
No 216
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.01 E-value=39 Score=33.70 Aligned_cols=67 Identities=24% Similarity=0.281 Sum_probs=49.2
Q ss_pred CHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhH--hhHHHHHhh-CcEEEEeC
Q 014746 208 DKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGL--THFDEILHE-ADGIILAR 280 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv--~nl~eI~~~-sDgImIar 280 (419)
..+.+. .++++|+|.|.+=.. ++++++++.+.+.+.+.+.+ .+||-.-|+ +|+.++++. .|.|.+|.
T Consensus 191 ~leea~-~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~----~~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 191 SLEDAL-KAAKAGADIIMLDNM-TPEEIREVIEALKREGLRER----VKIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CHHHHH-HHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCC----EEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 455665 568999999999887 89999999998876552122 246666665 477787777 69998854
No 217
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=61.84 E-value=79 Score=31.18 Aligned_cols=37 Identities=24% Similarity=-0.003 Sum_probs=23.2
Q ss_pred HHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHH
Q 014746 334 ANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 334 ~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
..|...|+|++|+..--....-+-+-+++...|++.+
T Consensus 90 ~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 90 KHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 3566778888877543333333466777777777766
No 218
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=61.42 E-value=98 Score=32.36 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=37.2
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHc-CCcEEEEccccccccCCCcchhhHhHHHH-HHHcCCceEEecc
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNMA-GKPAVVTRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGA 348 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~~-gkpvi~TqmLeSM~~~~~PtraEv~Dv~n-av~~G~D~vmLs~ 348 (419)
.|..++. -+..-++++.+++++ .+|+++ +-.|.-.++.+++. +...|+|++.+.+
T Consensus 159 ~g~~~gq--~~e~~~~i~~~Vk~~~~iPv~v---------KLsPn~t~i~~ia~aa~~~Gadgi~liN 215 (385)
T PLN02495 159 MGAAVGQ--DCDLLEEVCGWINAKATVPVWA---------KMTPNITDITQPARVALKSGCEGVAAIN 215 (385)
T ss_pred cchhhcc--CHHHHHHHHHHHHHhhcCceEE---------EeCCChhhHHHHHHHHHHhCCCEEEEec
Confidence 3444443 367777788888765 799997 22355556777776 6668899999864
No 219
>PRK00865 glutamate racemase; Provisional
Probab=61.08 E-value=88 Score=30.52 Aligned_cols=161 Identities=10% Similarity=0.108 Sum_probs=83.4
Q ss_pred HhhhcCCcEEEEecCCCHH--HHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCc--EEEEeCCCccCCCCch
Q 014746 215 WGARNNIDFLSLSHTRGAE--DVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEAD--GIILARGNLGVDLPPE 290 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~sae--dv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sD--gImIargDLg~elg~e 290 (419)
+..+.|+|+|+++ ++|+. -+.++++. -+++|+- ||. ++..+-.. .... ||+=.++ .-
T Consensus 62 ~L~~~g~d~iVIa-CNTa~~~~l~~lr~~-------~~iPvig-i~~--a~~~a~~~-~~~~~igVLaT~~-------Ti 122 (261)
T PRK00865 62 FLLEYGVKMLVIA-CNTASAVALPDLRER-------YDIPVVG-IVP--AIKPAAAL-TRNGRIGVLATPG-------TV 122 (261)
T ss_pred HHHhCCCCEEEEe-CchHHHHHHHHHHHh-------CCCCEEe-eHH--HHHHHHHh-cCCCeEEEEECHH-------Hh
Confidence 4456899999998 56665 34666653 2478898 873 44333221 1122 2221111 01
Q ss_pred hHHHHHHHHHHHHHHcCCcEE-E-EccccccccCCCc----chhhHhHHHHH-HHcCCceEEecccccCCCCHHHHHHHH
Q 014746 291 KVFLFQKAALYKCNMAGKPAV-V-TRVVDSMTDNLRP----TRAEATDVANA-VLDGSDAILLGAETLRGLYPVETISIV 363 (419)
Q Consensus 291 ~v~~~qk~Ii~a~~~~gkpvi-~-TqmLeSM~~~~~P----traEv~Dv~na-v~~G~D~vmLs~ETa~G~yP~eaV~~~ 363 (419)
+....|+.+-... .+.-+. . +.-+-.++++... .+..+....+. ..+|+|+++|. -..||.-
T Consensus 123 ~s~~y~~~i~~~~--~~~~v~~~~~~~lv~~ie~g~~~~~~~~~~l~~~l~~l~~~g~d~iILG----CTh~p~l----- 191 (261)
T PRK00865 123 KSAAYRDLIARFA--PDCQVESLACPELVPLVEAGILGGPVTLEVLREYLAPLLAAGIDTLVLG----CTHYPLL----- 191 (261)
T ss_pred hchHHHHHHHHhC--CCCEEEEecCHHHHHHHhCCCcCCHHHHHHHHHHHHHHhcCCCCEEEEC----CcCHHHH-----
Confidence 1223343332211 123332 3 4334445544332 22333444443 35799999998 8889952
Q ss_pred HHHHHHH-hc-CC--cChHHHHHHHHHHHHHCCCCCC----CCEEEEEee
Q 014746 364 GKICAEA-KT-TN--ATSESALKVALDYGKAHGVIKS----HDRVVICQK 405 (419)
Q Consensus 364 ~~I~~~a-E~-~~--~~~~~~~~~a~~~~~~~~~~~~----gd~vv~~~g 405 (419)
..-+++. .. -+ +..+...+.+.+++..+++... +.....+++
T Consensus 192 ~~~i~~~~~~~v~vIDp~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~t~ 241 (261)
T PRK00865 192 KPEIQQVLGEGVTLIDSGEAIARRVARLLEELNLLASSDENPAHRFFTTG 241 (261)
T ss_pred HHHHHHHcCCCCEEECCHHHHHHHHHHHHhhcccccccCCCCCEEEEECC
Confidence 2222211 11 12 5578889999999988887532 344555554
No 220
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=61.07 E-value=22 Score=33.64 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCC
Q 014746 294 LFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRG 353 (419)
Q Consensus 294 ~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G 353 (419)
..-..+++.|+++|+|++= .- =-+++..|...|+|.+=+=--.+.|
T Consensus 88 ~~~~~v~~~~~~~~i~~iPG~~--------------TptEi~~A~~~G~~~vK~FPA~~~G 134 (196)
T PF01081_consen 88 GFDPEVIEYAREYGIPYIPGVM--------------TPTEIMQALEAGADIVKLFPAGALG 134 (196)
T ss_dssp S--HHHHHHHHHHTSEEEEEES--------------SHHHHHHHHHTT-SEEEETTTTTTT
T ss_pred CCCHHHHHHHHHcCCcccCCcC--------------CHHHHHHHHHCCCCEEEEecchhcC
Confidence 3457899999999999974 22 2356788888999998885333333
No 221
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=61.01 E-value=1.6e+02 Score=29.71 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=74.3
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHH
Q 014746 226 LSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCN 304 (419)
Q Consensus 226 lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~ 304 (419)
+.-..++++|.++++.. +++|++|+=--- +...+.+.+. +|-| | .-+..-+ -...+...+
T Consensus 57 ~~Rm~~p~~I~aIk~~V-------~iPVigk~Righ-~~Ea~~L~~~GvDiI-----D-~Te~lrp-----ad~~~~~~K 117 (293)
T PRK04180 57 VARMADPKMIEEIMDAV-------SIPVMAKARIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADEEYHIDK 117 (293)
T ss_pred eeecCCHHHHHHHHHhC-------CCCeEEeehhhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-----hHHHHHHHH
Confidence 34568899999887653 467777653222 4555555544 4766 4 2121111 112222223
Q ss_pred -HcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHhc
Q 014746 305 -MAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 305 -~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~ 372 (419)
+++.|+.. . +.+.+.-+++..|+|.+--++|.-.|+ -+|||+-|+.|-.+.-.
T Consensus 118 ~~f~~~fmad~--------------~~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~ 172 (293)
T PRK04180 118 WDFTVPFVCGA--------------RNLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRR 172 (293)
T ss_pred HHcCCCEEccC--------------CCHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHH
Confidence 34888775 3 245566789999999999999999998 68999999999988876
No 222
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=60.91 E-value=62 Score=31.95 Aligned_cols=90 Identities=20% Similarity=0.197 Sum_probs=53.6
Q ss_pred CCccCHHHHHHHhhhcC-CcEEEEecCCCH--HHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeC
Q 014746 204 LTDKDKEVISTWGARNN-IDFLSLSHTRGA--EDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILAR 280 (419)
Q Consensus 204 lte~D~~di~~~~l~~g-~d~I~lsfV~sa--edv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIar 280 (419)
|.+.+.++..+.+...+ +|+|++|=..+. -|...++.+-+... .-+.++ =+=-..+|+.++++.+||+.++-
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~--~~Pvll---ggGvt~eNv~e~l~~adGviVgS 228 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVK--DTPVLA---GSGVNLENVEELLSIADGVIVAT 228 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccC--CCeEEE---ECCCCHHHHHHHHhhCCEEEECC
Confidence 45556655433445555 999999987665 44544543322111 223333 36667789999999999999975
Q ss_pred C-----CccCCCCchhHHHHHHH
Q 014746 281 G-----NLGVDLPPEKVFLFQKA 298 (419)
Q Consensus 281 g-----DLg~elg~e~v~~~qk~ 298 (419)
+ +.......+++..+.+.
T Consensus 229 ~~K~~G~~~n~~D~~rV~~Fm~~ 251 (257)
T TIGR00259 229 TIKKDGVFNNFVDQARVSQFVEK 251 (257)
T ss_pred CcccCCccCCCcCHHHHHHHHHH
Confidence 4 33333444555544443
No 223
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=60.90 E-value=2e+02 Score=29.30 Aligned_cols=135 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred ccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHH--------------------------------------------H
Q 014746 206 DKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARD--------------------------------------------F 241 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~--------------------------------------------~ 241 (419)
+.-+..+. .+++.|+|+|.+. ++|+..+++ .
T Consensus 15 eekK~~it-~alEaG~d~vvv~----~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~ 89 (376)
T COG1465 15 EEKKKRIT-AALEAGVDVVVVR----PADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRE 89 (376)
T ss_pred hHhhHHHH-HHHhcCCCEEEEC----HHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHH
Q ss_pred HHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-Eccccccc
Q 014746 242 LSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMT 320 (419)
Q Consensus 242 l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~ 320 (419)
+.++| ........|.+.+--+-..++...+|.+++---|..+ +|+|.+-.-.+ +.-+=+ ..
T Consensus 90 ~~~~G--~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlIA~l~---------~e~~kliA~------ 151 (376)
T COG1465 90 LMDRG--HEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLIADLQ---------HEKVKLIAG------ 151 (376)
T ss_pred hhhcC--cceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHHHHhh---------ccceEEEEE------
Q ss_pred cCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHhc
Q 014746 321 DNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 321 ~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~ 372 (419)
.-+.+|..-.+.....|+|+++|.++ -.+-++-..++++++|+
T Consensus 152 ---V~saeEA~vA~eTLE~GaDgVll~~~------d~~eIk~~~~~~~e~~~ 194 (376)
T COG1465 152 ---VKSAEEARVALETLEKGADGVLLDSD------DPEEIKKTAEVVEEAES 194 (376)
T ss_pred ---eccHHHHHHHHHHHhccCceEEeCCC------CHHHHHHHHHHHHHhcc
No 224
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=60.58 E-value=1e+02 Score=29.92 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=52.2
Q ss_pred HHhhhcCCcEEEEec------CCCHHHHHHHHHHHH-hcCCCCCceEEEEecC---HHhHhhHHHHHhh-CcEEEEeCCC
Q 014746 214 TWGARNNIDFLSLSH------TRGAEDVRHARDFLS-QLGDLGQTQIFAKIEN---TEGLTHFDEILHE-ADGIILARGN 282 (419)
Q Consensus 214 ~~~l~~g~d~I~lsf------V~saedv~~v~~~l~-~~~~~~~~~IiaKIEt---~~gv~nl~eI~~~-sDgImIargD 282 (419)
++.++.|+++|.+.= --|.++=+++.+... ..+ .++.|++-+=+ .++++.+....+. +|++|+.+--
T Consensus 25 ~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~--~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~ 102 (281)
T cd00408 25 EFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA--GRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPY 102 (281)
T ss_pred HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC--CCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 377888999987642 233444444444333 333 56788888743 3344444444333 5999997765
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+.. .+-+.+...-+.|.. +.+.|+++
T Consensus 103 y~~-~~~~~~~~~~~~ia~---~~~~pi~i 128 (281)
T cd00408 103 YNK-PSQEGIVAHFKAVAD---ASDLPVIL 128 (281)
T ss_pred CCC-CCHHHHHHHHHHHHh---cCCCCEEE
Confidence 443 233444444444444 46788875
No 225
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=60.01 E-value=20 Score=33.96 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHh
Q 014746 41 RSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKS 82 (419)
Q Consensus 41 ~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~ 82 (419)
.-.+.|.+|.++|++.|||.+-.-+.++..++++..|++-..
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 346688999999999999999999999999999999998654
No 226
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=59.82 E-value=65 Score=27.71 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 235 VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 235 v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+..+++.+.+.+ +...+.+. +..-.-++++++++-+|.|+.+-.+ ......+-..|+++++|.|.
T Consensus 58 a~~~~~~l~~~n--p~~~v~~~-~~~~~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~ 122 (135)
T PF00899_consen 58 AEAAKERLQEIN--PDVEVEAI-PEKIDEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFID 122 (135)
T ss_dssp HHHHHHHHHHHS--TTSEEEEE-ESHCSHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHhc--Cceeeeee-ecccccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 556667777766 66666653 3333557888888888988877554 45566788899999999987
No 227
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=59.51 E-value=1.6e+02 Score=27.83 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=71.7
Q ss_pred ccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCcc
Q 014746 206 DKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLG 284 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg 284 (419)
..+...+.+.+++.|+..+-+.+ +++...+.++.+..+.+ .. ++.=.=|.--.++++..+++ +|+++.
T Consensus 21 ~~~~~~~~~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~--~~--~~iGaGTV~~~~~~~~a~~aGA~fivs------ 89 (206)
T PRK09140 21 PDEALAHVGALIEAGFRAIEIPL-NSPDPFDSIAALVKALG--DR--ALIGAGTVLSPEQVDRLADAGGRLIVT------ 89 (206)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcC--CC--cEEeEEecCCHHHHHHHHHcCCCEEEC------
Confidence 33444443456677788777774 66666666666554433 11 22222233334455555544 466664
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHH
Q 014746 285 VDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (419)
Q Consensus 285 ~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~ 363 (419)
|..-..++.+|+..|.+++. +. | .+++..|...|+|.+-+-. .+..+.+.++.+
T Consensus 90 --------p~~~~~v~~~~~~~~~~~~~G~~-----------t---~~E~~~A~~~Gad~vk~Fp---a~~~G~~~l~~l 144 (206)
T PRK09140 90 --------PNTDPEVIRRAVALGMVVMPGVA-----------T---PTEAFAALRAGAQALKLFP---ASQLGPAGIKAL 144 (206)
T ss_pred --------CCCCHHHHHHHHHCCCcEEcccC-----------C---HHHHHHHHHcCCCEEEECC---CCCCCHHHHHHH
Confidence 22335678889999999987 44 2 2446778888999998732 233444555544
Q ss_pred HHH
Q 014746 364 GKI 366 (419)
Q Consensus 364 ~~I 366 (419)
...
T Consensus 145 ~~~ 147 (206)
T PRK09140 145 RAV 147 (206)
T ss_pred Hhh
Confidence 433
No 228
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=59.47 E-value=99 Score=30.20 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=55.8
Q ss_pred HHhhhcCCcEEEEec------CCCHHHHHHHHHHHHhcCCCCCceEEEEecC---HHhHhhHHHHHhh-CcEEEEeCCCc
Q 014746 214 TWGARNNIDFLSLSH------TRGAEDVRHARDFLSQLGDLGQTQIFAKIEN---TEGLTHFDEILHE-ADGIILARGNL 283 (419)
Q Consensus 214 ~~~l~~g~d~I~lsf------V~saedv~~v~~~l~~~~~~~~~~IiaKIEt---~~gv~nl~eI~~~-sDgImIargDL 283 (419)
++.++.|+++|.+.= --|.++=+++.+...+... .++.|++-+-. .++++.+....+. +|++|+.+-..
T Consensus 28 ~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 28 EFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 377889999998762 2344554555444433321 56788888853 4555555555444 59999987644
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 284 GVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 284 g~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
.. .+-+.+....+.|.. +.++|+++
T Consensus 107 ~~-~~~~~l~~~~~~ia~---~~~~pi~l 131 (284)
T cd00950 107 NK-PSQEGLYAHFKAIAE---ATDLPVIL 131 (284)
T ss_pred CC-CCHHHHHHHHHHHHh---cCCCCEEE
Confidence 21 122445544455544 45888886
No 229
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=59.16 E-value=2e+02 Score=28.90 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=73.7
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHH-
Q 014746 227 SHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCN- 304 (419)
Q Consensus 227 sfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~- 304 (419)
.-.+++++|+++++.. +++||+|+=--- +...+.+.+. +|-| | .-+...+ -...+...+
T Consensus 51 ~R~~~p~~I~~I~~~V-------~iPVig~~kigh-~~Ea~~L~~~GvDiI-----D-eTe~lrP-----ade~~~~~K~ 111 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAV-------SIPVMAKVRIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADWTFHIDKK 111 (287)
T ss_pred eecCCHHHHHHHHHhC-------CCCEEEEeeccH-HHHHHHHHHcCCCEE-----E-ccCCCCc-----HHHHHHHHHH
Confidence 4567888888887653 478888764322 4455555544 4766 4 2221111 123333333
Q ss_pred HcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHhc
Q 014746 305 MAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 305 ~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~ 372 (419)
+++.|+.. .- .+.+.-+++..|+|.+--++|--.| +-+|||+-|+.+-.+...
T Consensus 112 ~f~vpfmad~~--------------~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~ 165 (287)
T TIGR00343 112 KFKVPFVCGAR--------------DLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQ 165 (287)
T ss_pred HcCCCEEccCC--------------CHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHH
Confidence 34888775 32 3556678899999999999998888 689999999999888775
No 230
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=58.95 E-value=1.9e+02 Score=28.45 Aligned_cols=86 Identities=23% Similarity=0.258 Sum_probs=53.3
Q ss_pred CceEEEEe--cCHHhHhhHHHHHhh--CcEEEEeCC-----CccCCCCchhHHHHHHHHHHHHHHc-CCcEEE-Eccccc
Q 014746 250 QTQIFAKI--ENTEGLTHFDEILHE--ADGIILARG-----NLGVDLPPEKVFLFQKAALYKCNMA-GKPAVV-TRVVDS 318 (419)
Q Consensus 250 ~~~IiaKI--Et~~gv~nl~eI~~~--sDgImIarg-----DLg~elg~e~v~~~qk~Ii~a~~~~-gkpvi~-TqmLeS 318 (419)
...++++| .+++...+....+.. .|+|=+-=+ ..+.+++ .-+..-.+++++++++ ++|+++ -
T Consensus 89 ~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl----- 161 (296)
T cd04740 89 GTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKL----- 161 (296)
T ss_pred CCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEe-----
Confidence 46688887 566666666665554 488866210 0022222 1235556788888877 999987 2
Q ss_pred cccCCCcchhhHhHHHH-HHHcCCceEEec
Q 014746 319 MTDNLRPTRAEATDVAN-AVLDGSDAILLG 347 (419)
Q Consensus 319 M~~~~~PtraEv~Dv~n-av~~G~D~vmLs 347 (419)
.|+..|..+++. +...|+|++.++
T Consensus 162 -----~~~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 162 -----TPNVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred -----CCCchhHHHHHHHHHHcCCCEEEEE
Confidence 244456666665 556799998774
No 231
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=58.86 E-value=1.6e+02 Score=31.02 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=102.4
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHH-hcCCCCCceEEEEecCH-HhHh-hHHHHHhh-Cc--EEE
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLS-QLGDLGQTQIFAKIENT-EGLT-HFDEILHE-AD--GII 277 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~-~~~~~~~~~IiaKIEt~-~gv~-nl~eI~~~-sD--gIm 277 (419)
+|-+++..|....-+.|+|+|=+.|.-+.+...+..+.+. ..+ ..+.+++-.. ..+. .++.++.+ .| .++
T Consensus 21 ~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if 96 (409)
T COG0119 21 FSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAG----LFICALIAALARAIKRDIEALLEAGVDRIHIF 96 (409)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcC----cccchhhhhhHHhHHhhHHHHHhCCCCEEEEE
Confidence 4677788776554568999998888776655555555554 222 1223333221 2222 45555555 35 578
Q ss_pred EeCCCccCCCCc----hhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHH-cCCceEEecccccC
Q 014746 278 LARGNLGVDLPP----EKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILLGAETLR 352 (419)
Q Consensus 278 IargDLg~elg~----e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~-~G~D~vmLs~ETa~ 352 (419)
++-.|+-++..+ +.....-...+..++.+|.++.. -+|... +-...-+.+++.++. .|++.+-|. +|-=
T Consensus 97 ~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~--~~Ed~~---rt~~~~l~~~~~~~~~~ga~~i~l~-DTvG 170 (409)
T COG0119 97 IATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF--SAEDAT---RTDPEFLAEVVKAAIEAGADRINLP-DTVG 170 (409)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE--Eeeccc---cCCHHHHHHHHHHHHHcCCcEEEEC-CCcC
Confidence 888898887655 56666668899999999977764 122222 333344455555544 459999996 8888
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 014746 353 GLYPVETISIVGKICAEAK 371 (419)
Q Consensus 353 G~yP~eaV~~~~~I~~~aE 371 (419)
+-.|-+.-..+..+.+..-
T Consensus 171 ~~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 171 VATPNEVADIIEALKANVP 189 (409)
T ss_pred ccCHHHHHHHHHHHHHhCC
Confidence 8899999888888888764
No 232
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=58.84 E-value=22 Score=34.72 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=49.0
Q ss_pred EEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCC
Q 014746 275 GIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRG 353 (419)
Q Consensus 275 gImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G 353 (419)
.+|---.=.|--.|+..- ...+.| +.+...|||+ ..+ ..| +|++.|...|+|+|+++.-.|..
T Consensus 147 avMPlgsPIGSg~Gi~n~-~~l~~i---~~~~~vPvIvDAGi-------G~p-----Sdaa~AMElG~daVLvNTAiA~A 210 (247)
T PF05690_consen 147 AVMPLGSPIGSGRGIQNP-YNLRII---IERADVPVIVDAGI-------GTP-----SDAAQAMELGADAVLVNTAIAKA 210 (247)
T ss_dssp EBEEBSSSTTT---SSTH-HHHHHH---HHHGSSSBEEES----------SH-----HHHHHHHHTT-SEEEESHHHHTS
T ss_pred EEEecccccccCcCCCCH-HHHHHH---HHhcCCcEEEeCCC-------CCH-----HHHHHHHHcCCceeehhhHHhcc
Confidence 555544444444444432 233333 3344999998 441 133 56799999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 014746 354 LYPVETISIVGKICA 368 (419)
Q Consensus 354 ~yP~eaV~~~~~I~~ 368 (419)
+.|+.-.+-|+.-++
T Consensus 211 ~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 211 KDPVAMARAFKLAVE 225 (247)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999988777765544
No 233
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=58.83 E-value=89 Score=32.79 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=57.3
Q ss_pred cCHHHHHHHhhhcCCcEEEEe-------cCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEe
Q 014746 207 KDKEVISTWGARNNIDFLSLS-------HTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILA 279 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~ls-------fV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIa 279 (419)
.|.-.|. ++...|+.+|... -|=+.+++++.++.++++| .-+.-||+.. + .+-|..|
T Consensus 11 ~d~v~l~-~irQ~G~~giV~al~~~p~gevW~~~~i~~~k~~ie~~G-----L~~~vvEs~p-v---------~e~Ik~g 74 (394)
T TIGR00695 11 NDPVSLE-DVRQAGATGIVTALHHIPNGEVWEKEEIRKRKEYIESAG-----LHWSVVESVP-V---------HEAIKTG 74 (394)
T ss_pred CCcchHH-HHhhcCCcceeecCCCCCCCCCCCHHHHHHHHHHHHHcC-----CeEEEEeCCC-c---------cHHHHcC
Confidence 4555564 5567899998833 3567889999999999877 2355567733 1 1233333
Q ss_pred CCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 280 RGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 280 rgDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
.+ +.++.-...++.++..-++|+|+++
T Consensus 75 ~~------~rd~~Ienyk~~irNla~~GI~vic 101 (394)
T TIGR00695 75 TG------NYGRWIENYKQTLRNLAQCGIKTVC 101 (394)
T ss_pred CC------cHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 32 2345556668889999999999998
No 234
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=58.41 E-value=35 Score=36.01 Aligned_cols=46 Identities=26% Similarity=0.417 Sum_probs=42.1
Q ss_pred EecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 34 GTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 34 ~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
+.+|-.-++.+.+.-|.++|+|+.=|.-|.|+..+..++|..||+.
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 5567777889999999999999999999999999999999999974
No 235
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=57.94 E-value=2.2e+02 Score=29.46 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=58.1
Q ss_pred CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCC-CCHHHHHHHHHHHHHHHhc------------
Q 014746 307 GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRG-LYPVETISIVGKICAEAKT------------ 372 (419)
Q Consensus 307 gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G-~yP~eaV~~~~~I~~~aE~------------ 372 (419)
.+|.|+ -.-=.|+.....+...-+++|-.|+..|+|+|..+-- .| .+=-+.++.+.++++++++
T Consensus 125 ~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy--~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpR 202 (348)
T PRK09250 125 KIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIY--FGSEESRRQIEEISEAFEEAHELGLATVLWSYLR 202 (348)
T ss_pred CCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEe--cCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeccc
Confidence 688887 4433333232234556668899999999999988633 43 3335677788888888887
Q ss_pred C---CcCh-----HHHHHHHHHHHHHCCC
Q 014746 373 T---NATS-----ESALKVALDYGKAHGV 393 (419)
Q Consensus 373 ~---~~~~-----~~~~~~a~~~~~~~~~ 393 (419)
. ..+. .+.+..|...+.+.|-
T Consensus 203 G~~i~~~~d~~~~~d~Ia~AaRiaaELGA 231 (348)
T PRK09250 203 NSAFKKDGDYHTAADLTGQANHLAATIGA 231 (348)
T ss_pred CcccCCcccccccHHHHHHHHHHHHHHcC
Confidence 0 1122 3689999999999884
No 236
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=57.32 E-value=1.7e+02 Score=30.51 Aligned_cols=117 Identities=21% Similarity=0.161 Sum_probs=73.2
Q ss_pred hhhcCCcEEEE---ecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh--CcEEEEeCCCccC-----
Q 014746 216 GARNNIDFLSL---SHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE--ADGIILARGNLGV----- 285 (419)
Q Consensus 216 ~l~~g~d~I~l---sfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~--sDgImIargDLg~----- 285 (419)
.+..|.+.+.- +...+++++.++.+.+.+.. .+..|+.|+=.--..+.+...++. +|+|.|.-++=+.
T Consensus 179 ~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~--~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~ 256 (392)
T cd02808 179 GIPPGVDLISPPPHHDIYSIEDLAQLIEDLREAT--GGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPL 256 (392)
T ss_pred CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhC--CCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcc
Confidence 45667776653 35688888888888888765 447888888644234445555543 5999995443221
Q ss_pred ----CCCchhHHHHHHHHHHHHHHc----CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 286 ----DLPPEKVFLFQKAALYKCNMA----GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 286 ----elg~e~v~~~qk~Ii~a~~~~----gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+.|++. ......+..+++.. ..|++. ..+- --.|++.++..|||++.+.
T Consensus 257 ~~~~~~g~pt-~~~L~~v~~~~~~~~~~~~i~viasGGI~------------~g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 257 TFIDHVGLPT-ELGLARAHQALVKNGLRDRVSLIASGGLR------------TGADVAKALALGADAVGIG 314 (392)
T ss_pred cccccCCccH-HHHHHHHHHHHHHcCCCCCCeEEEECCCC------------CHHHHHHHHHcCCCeeeec
Confidence 123221 12334455555544 467776 4422 3468999999999999875
No 237
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=57.02 E-value=1.5e+02 Score=29.25 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=55.3
Q ss_pred HHhhh-cCCcEEEEe------cCCCHHHHHHHHH-HHHhcCCCCCceEEEEec---CHHhHhhHHHHHhh-CcEEEEeCC
Q 014746 214 TWGAR-NNIDFLSLS------HTRGAEDVRHARD-FLSQLGDLGQTQIFAKIE---NTEGLTHFDEILHE-ADGIILARG 281 (419)
Q Consensus 214 ~~~l~-~g~d~I~ls------fV~saedv~~v~~-~l~~~~~~~~~~IiaKIE---t~~gv~nl~eI~~~-sDgImIarg 281 (419)
++.++ .|+++|++. +.=|.++-.++.+ ..+..+ .++.||+.+- |.++++......+. +|++|+.+.
T Consensus 31 ~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~--~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P 108 (293)
T PRK04147 31 RFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK--GKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTP 108 (293)
T ss_pred HHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC--CCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 47788 999998764 2233444444443 333334 5688999984 56666666665555 699999775
Q ss_pred CccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 282 NLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 282 DLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
-+.. ..-+.+ .++.-..|.+.+.|+++
T Consensus 109 ~y~~-~~~~~l---~~~f~~va~a~~lPv~i 135 (293)
T PRK04147 109 FYYP-FSFEEI---CDYYREIIDSADNPMIV 135 (293)
T ss_pred cCCC-CCHHHH---HHHHHHHHHhCCCCEEE
Confidence 4322 111233 33344445556788877
No 238
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=56.89 E-value=2e+02 Score=29.71 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 233 EDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 233 edv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+.++.+++...+. ++.+++-+-++..++-+.+. +|.+-||-+++.- -.++.++.+.||||++
T Consensus 152 ~gl~~L~~~~~e~----Gl~~~tev~d~~~v~~~~~~---~d~lqIga~~~~n-----------~~LL~~va~t~kPVll 213 (352)
T PRK13396 152 SALELLAAAREAT----GLGIITEVMDAADLEKIAEV---ADVIQVGARNMQN-----------FSLLKKVGAQDKPVLL 213 (352)
T ss_pred HHHHHHHHHHHHc----CCcEEEeeCCHHHHHHHHhh---CCeEEECcccccC-----------HHHHHHHHccCCeEEE
Confidence 3455555555443 47889988888877777664 7999998776432 3357778889999998
Q ss_pred -EccccccccCCCcchhhHhHHHHHHHc-CCceEEeccc---ccCCCCHH
Q 014746 313 -TRVVDSMTDNLRPTRAEATDVANAVLD-GSDAILLGAE---TLRGLYPV 357 (419)
Q Consensus 313 -TqmLeSM~~~~~PtraEv~Dv~nav~~-G~D~vmLs~E---Ta~G~yP~ 357 (419)
+.| .+|-.|+...+..+.. |..-++|..= |-...||-
T Consensus 214 k~G~--------~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~ 255 (352)
T PRK13396 214 KRGM--------AATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTR 255 (352)
T ss_pred eCCC--------CCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCC
Confidence 653 3577888888887764 7766777633 33335773
No 239
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=56.69 E-value=1.1e+02 Score=27.11 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 295 FQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 295 ~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
+..++++.|+++|+++.+ |- + +.++...++..|+|+++-
T Consensus 148 ~~~~~i~~~~~~g~~v~~wtv------n-------~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 148 LTPELVRAAHAAGLKVYVWTV------N-------DPEDARRLLALGVDGIIT 187 (189)
T ss_pred CCHHHHHHHHHcCCEEEEEcC------C-------CHHHHHHHHHCCCCEEec
Confidence 567899999999999998 73 1 244556778889999874
No 240
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=56.26 E-value=2.1e+02 Score=28.20 Aligned_cols=159 Identities=12% Similarity=0.066 Sum_probs=91.6
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEe-cCCCH-----HHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcE-
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLS-HTRGA-----EDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADG- 275 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~ls-fV~sa-----edv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDg- 275 (419)
+|..++..|.+...+.|++.|=+- |+... .|-.++.+.+... .+..+.+-.-+.+++++.- +. .|.
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~---~~~~~~~~~~~~~dv~~A~---~~g~~~i 90 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR---PGVRYSALVPNLRGAERAL---AAGVDEV 90 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC---CCCEEEEECCCHHHHHHHH---HcCcCEE
Confidence 355666666556678999999764 43322 2334455555432 2455555554555544433 22 343
Q ss_pred -EEEeCCCccCC--CC--chhHHHHHHHHHHHHHHcCCcEEE--EccccccccCCCcchhhHhHHHH-HHHcCCceEEec
Q 014746 276 -IILARGNLGVD--LP--PEKVFLFQKAALYKCNMAGKPAVV--TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLG 347 (419)
Q Consensus 276 -ImIargDLg~e--lg--~e~v~~~qk~Ii~a~~~~gkpvi~--TqmLeSM~~~~~PtraEv~Dv~n-av~~G~D~vmLs 347 (419)
+++.-.|+-.. ++ .++....-...++.++.+|+-+.. ..-+..-. .++-+.+.+.+++. +...|+|.+-|.
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~-~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 169 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY-EGEVPPERVAEVAERLLDLGCDEISLG 169 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC-CCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 44444553111 11 234445557788999999998754 21111111 11223455555554 566799999997
Q ss_pred ccccCCCCHHHHHHHHHHHHHHH
Q 014746 348 AETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 348 ~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
+|.=.-.|.+.-++...+.+..
T Consensus 170 -DT~G~~~P~~v~~lv~~l~~~~ 191 (274)
T cd07938 170 -DTIGVATPAQVRRLLEAVLERF 191 (274)
T ss_pred -CCCCccCHHHHHHHHHHHHHHC
Confidence 7888888999888888877653
No 241
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=56.14 E-value=44 Score=32.38 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=43.2
Q ss_pred CHHHHHHHhhhcCCcEEEEecCCCH---HHHHHHHHHHHhcCCCCCceEEEE--ecCHHhHhhHHHHHhh-CcEEEEeCC
Q 014746 208 DKEVISTWGARNNIDFLSLSHTRGA---EDVRHARDFLSQLGDLGQTQIFAK--IENTEGLTHFDEILHE-ADGIILARG 281 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~lsfV~sa---edv~~v~~~l~~~~~~~~~~IiaK--IEt~~gv~nl~eI~~~-sDgImIarg 281 (419)
+..++.+.+.+.|+|+|.+.--.+. .+.+.++++-... ..+.||+- |.|. +...+.+.. +|+||+|||
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~---~~ipIIgNGgI~s~---eda~e~l~~GAd~VmvgR~ 222 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF---NDKIIIGNNSIDDI---ESAKEMLKAGADFVSVARA 222 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc---CCCcEEEECCcCCH---HHHHHHHHhCCCeEEEcHh
Confidence 3334444667899999988532221 3555555543321 23667763 3333 333344444 799999998
Q ss_pred CccCCCC
Q 014746 282 NLGVDLP 288 (419)
Q Consensus 282 DLg~elg 288 (419)
=|.-.+.
T Consensus 223 ~l~~~~~ 229 (231)
T TIGR00736 223 ILKGNVE 229 (231)
T ss_pred hccCCcC
Confidence 7765544
No 242
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=56.11 E-value=1.6e+02 Score=26.89 Aligned_cols=135 Identities=14% Similarity=0.108 Sum_probs=74.0
Q ss_pred HHHHHHhhhcCCcEEEE-----ecCCC-HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCC
Q 014746 210 EVISTWGARNNIDFLSL-----SHTRG-AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGN 282 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~l-----sfV~s-aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargD 282 (419)
++++ .+.+.|+|.|-+ +|+.+ ......++++-.... ..+.+..|..... +-++.+.+. +||+.+--
T Consensus 15 ~~~~-~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~--~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh~-- 87 (210)
T TIGR01163 15 EEVK-AVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTD--LPIDVHLMVENPD--RYIEDFAEAGADIITVHP-- 87 (210)
T ss_pred HHHH-HHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCC--CcEEEEeeeCCHH--HHHHHHHHcCCCEEEEcc--
Confidence 4454 667889999998 46544 333333333322111 2233447777654 446666655 59988831
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecc--cccCC-CCHHH
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA--ETLRG-LYPVE 358 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~--ETa~G-~yP~e 358 (419)
+.. ......++.++++|...++ .. +. |..| ...++..++|.+++.+ .+..| +++..
T Consensus 88 -----~~~---~~~~~~~~~~~~~g~~~~~~~~--------~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 147 (210)
T TIGR01163 88 -----EAS---EHIHRLLQLIKDLGAKAGIVLN--------PA-TPLE---FLEYVLPDVDLVLLMSVNPGFGGQKFIPD 147 (210)
T ss_pred -----CCc---hhHHHHHHHHHHcCCcEEEEEC--------CC-CCHH---HHHHHHhhCCEEEEEEEcCCCCcccccHH
Confidence 111 1225666888999988776 21 11 1122 2444566789887732 12333 56677
Q ss_pred HHHHHHHHHHHHh
Q 014746 359 TISIVGKICAEAK 371 (419)
Q Consensus 359 aV~~~~~I~~~aE 371 (419)
.++.++++.+...
T Consensus 148 ~~~~i~~i~~~~~ 160 (210)
T TIGR01163 148 TLEKIREVRKMID 160 (210)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766655444
No 243
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=55.79 E-value=1e+02 Score=26.00 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=39.5
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHH-HH---------HHHHHHHHHHHHhcCCc
Q 014746 29 MTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTA-YH---------QETLENLKIAIKSTKKL 86 (419)
Q Consensus 29 ~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e-~~---------~~~i~~ir~a~~~~~~~ 86 (419)
..++..+..+...+.+.++.|.++|++.+++++...+.+ .+ .++++.++.+.+ .|.+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~g~~ 142 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKE-AGIP 142 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHH-TTSE
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHH-cCCC
Confidence 445554444444449999999999999999999999998 33 344566666554 3433
No 244
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=55.66 E-value=38 Score=33.61 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=40.8
Q ss_pred EEecCCCCCCHHHHHHHHHcCCCEEEEec-----------cCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCC
Q 014746 33 VGTLGPRSRSVEIISGCLNAGMSVARFDF-----------SWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGP 96 (419)
Q Consensus 33 i~TiGp~~~~~~~i~~li~~Gm~v~RiN~-----------SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GP 96 (419)
+.|+ |-..+++..++|.++|+|+.=.++ ..-+.++..+.++.|.+++++.+..+-+|.- -||
T Consensus 151 l~T~-~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~h-GGP 223 (268)
T PF09370_consen 151 LFTT-AYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCH-GGP 223 (268)
T ss_dssp -EE---EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEE-CTT
T ss_pred Ceee-eeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEe-CCC
Confidence 3455 556789999999999999999998 3446688889999999999887766644444 455
No 245
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=55.57 E-value=2.2e+02 Score=28.19 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=83.4
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEecC-------------CCHHHHHHHHHHHHhcCCCCCceEEEEec------CH-HhH
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSHT-------------RGAEDVRHARDFLSQLGDLGQTQIFAKIE------NT-EGL 263 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsfV-------------~saedv~~v~~~l~~~~~~~~~~IiaKIE------t~-~gv 263 (419)
+|.||.---+ .+-+.|+|.|.+..- =+.+++...-+.+.+.- +.+.|++=++ |+ +++
T Consensus 20 ~tayD~~sAr-l~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~vvaD~pfg~y~~~~~~av 96 (264)
T PRK00311 20 LTAYDYPFAK-LFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALVVADMPFGSYQASPEQAL 96 (264)
T ss_pred EeCCCHHHHH-HHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcEEEeCCCCCccCCHHHHH
Confidence 3778887775 768899999975411 02222222222222222 3456788775 33 468
Q ss_pred hhHHHHHhh--CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEE----E-Eccc---cccccCCCcc-h-hh-H
Q 014746 264 THFDEILHE--ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAV----V-TRVV---DSMTDNLRPT-R-AE-A 330 (419)
Q Consensus 264 ~nl~eI~~~--sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi----~-TqmL---eSM~~~~~Pt-r-aE-v 330 (419)
+|...+++. ++||-|--| ..+...|+++.++|+||+ + -|-- .-+....+.. + .+ +
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i 164 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLL 164 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHH
Confidence 888888883 588888433 245567788889999996 3 2221 1122222221 1 12 3
Q ss_pred hHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHh
Q 014746 331 TDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 331 ~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
.+.-.....|+|+++|- |- |. +.+..|.++..
T Consensus 165 ~ra~a~~eAGA~~i~lE-----~v-~~---~~~~~i~~~l~ 196 (264)
T PRK00311 165 EDAKALEEAGAFALVLE-----CV-PA---ELAKEITEALS 196 (264)
T ss_pred HHHHHHHHCCCCEEEEc-----CC-CH---HHHHHHHHhCC
Confidence 55556668899999994 22 33 35566666554
No 246
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=55.14 E-value=97 Score=32.19 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHh---h-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHc
Q 014746 231 GAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILH---E-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMA 306 (419)
Q Consensus 231 saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~---~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~ 306 (419)
+-++++++++.. +.+|+.| |+.+.+.... + +|+|.|+--- |..+.- .+.....+...+.+.
T Consensus 216 ~w~~i~~l~~~~-------~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG-Grq~~~--~~a~~~~L~ei~~av 280 (367)
T TIGR02708 216 SPRDIEEIAGYS-------GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG-GRQLDG--GPAAFDSLQEVAEAV 280 (367)
T ss_pred CHHHHHHHHHhc-------CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC-ccCCCC--CCcHHHHHHHHHHHh
Confidence 557888887643 4678898 4444433322 2 5899884311 223211 011111122222223
Q ss_pred --CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEeccc
Q 014746 307 --GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 307 --gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~E 349 (419)
.+|+|. ..+- .-.|+..++..|+|++|+..-
T Consensus 281 ~~~i~vi~dGGIr------------~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 281 DKRVPIVFDSGVR------------RGQHVFKALASGADLVALGRP 314 (367)
T ss_pred CCCCcEEeeCCcC------------CHHHHHHHHHcCCCEEEEcHH
Confidence 388887 5422 357999999999999999755
No 247
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=54.92 E-value=98 Score=29.54 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 293 FLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 293 ~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
..+....++.++++|+++++ |- + ...+...++..|+|+++-
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwtv------n-------~~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWTV------N-------DPEDMARLIDLGVDGIIT 258 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEecC------C-------CHHHHHHHHHcCCCEEEc
Confidence 34567899999999999998 73 1 123456778889999875
No 248
>PLN02417 dihydrodipicolinate synthase
Probab=54.85 E-value=1.2e+02 Score=29.77 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=53.2
Q ss_pred HHhhhcCCcEEEEec------CCCHHHHHHHHH-HHHhcCCCCCceEEEEec---CHHhHhhHHHHHhh-CcEEEEeCCC
Q 014746 214 TWGARNNIDFLSLSH------TRGAEDVRHARD-FLSQLGDLGQTQIFAKIE---NTEGLTHFDEILHE-ADGIILARGN 282 (419)
Q Consensus 214 ~~~l~~g~d~I~lsf------V~saedv~~v~~-~l~~~~~~~~~~IiaKIE---t~~gv~nl~eI~~~-sDgImIargD 282 (419)
+|.++.|+++|.+.= .-|.++=.++.+ ..+..+ ..+.|++-+= |.++++....-.+. +|++|+.+-.
T Consensus 29 ~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~--~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~ 106 (280)
T PLN02417 29 NMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--GKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 106 (280)
T ss_pred HHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC--CCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 377889999998742 223344334433 333333 5678888884 56676666655554 5999998776
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
... .+-+.+...-+.+..+ . |+++
T Consensus 107 y~~-~~~~~i~~~f~~va~~----~-pi~l 130 (280)
T PLN02417 107 YGK-TSQEGLIKHFETVLDM----G-PTII 130 (280)
T ss_pred cCC-CCHHHHHHHHHHHHhh----C-CEEE
Confidence 532 2334444444555442 3 7765
No 249
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=54.62 E-value=3e+02 Score=29.45 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=65.0
Q ss_pred HHHHHHHhhhcCCcEEEEecC-C-CHHHHHHHHHH-HHhc--C-CCCCceEEEEecCHHhHhhH---------HHHHhh-
Q 014746 209 KEVISTWGARNNIDFLSLSHT-R-GAEDVRHARDF-LSQL--G-DLGQTQIFAKIENTEGLTHF---------DEILHE- 272 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV-~-saedv~~v~~~-l~~~--~-~~~~~~IiaKIEt~~gv~nl---------~eI~~~- 272 (419)
.+.+. +.++.|+..|..|.- . ++..+ ..+.. +... + ......|++|+-+++-.... +.+.+.
T Consensus 90 ~~~v~-l~l~~~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G 167 (444)
T TIGR02814 90 WGLVD-LLLRHGVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEG 167 (444)
T ss_pred HHHHH-HHHHcCCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcC
Confidence 34454 558899998887722 2 33222 22210 0000 0 00124799999877765441 222211
Q ss_pred ---------------CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHH------c--CCcEEE-EccccccccCCCcchh
Q 014746 273 ---------------ADGIILARGNLGVDLPPEKVFLFQKAALYKCNM------A--GKPAVV-TRVVDSMTDNLRPTRA 328 (419)
Q Consensus 273 ---------------sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~------~--gkpvi~-TqmLeSM~~~~~Ptra 328 (419)
+|.|.+. .|=|=+.+-......-..|+..+.+ + .+|||. ..+-
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~------------ 234 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIG------------ 234 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCC------------
Confidence 5888776 6766665532222222333322222 2 356776 5532
Q ss_pred hHhHHHHHHHcCCceEEec
Q 014746 329 EATDVANAVLDGSDAILLG 347 (419)
Q Consensus 329 Ev~Dv~nav~~G~D~vmLs 347 (419)
.-.+++.|...|+|+|...
T Consensus 235 t~~~vaAAlaLGAdgV~~G 253 (444)
T TIGR02814 235 TPEAAAAAFMLGADFIVTG 253 (444)
T ss_pred CHHHHHHHHHcCCcEEEec
Confidence 2346788899999999873
No 250
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=54.61 E-value=79 Score=30.36 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=19.2
Q ss_pred EEeeCCCEEEEeeCCC---CCCCcCeEeccCcccchhcCCCCEEEe
Q 014746 108 ISLLADESVVLTPDQD---KEATSNLLPINFSGLSKAVKKGDTIFI 150 (419)
Q Consensus 108 i~l~~G~~v~lt~~~~---~~~~~~~i~v~~~~l~~~v~~Gd~I~i 150 (419)
++.+.|.+++||...- ..++...-+-...-+.++|++||.|++
T Consensus 69 i~te~g~~l~LTp~HLI~v~~~~~~~~~~~~~vfA~~V~~Gd~v~~ 114 (217)
T PF01079_consen 69 IETEDGRSLTLTPNHLIFVADCNGSESSNFRAVFASDVRVGDCVLV 114 (217)
T ss_dssp EEETTS-EEEE-TT-EEEEEETTTTEE---EEEEGGG--TT-EEEE
T ss_pred EEcCCCCeEEecCCcEEEEecCCCCcccccceeehhhCCCCCEEEE
Confidence 5556667777765421 011111111012357899999999999
No 251
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.32 E-value=69 Score=32.10 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=46.9
Q ss_pred cCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHh--HhhHHHHHhh-CcEEEEeC
Q 014746 207 KDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEG--LTHFDEILHE-ADGIILAR 280 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~g--v~nl~eI~~~-sDgImIar 280 (419)
...+.+. .+++.|+|+|.+-. -++++++++.+.+++.. .++.+ |=.-| .+|+.++++. +|+|.++.
T Consensus 204 ~tleea~-eA~~~GaD~I~LDn-~~~e~l~~av~~~~~~~--~~i~l----eAsGGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 204 ETLEQVQ-EALEYGADIIMLDN-MPVDLMQQAVQLIRQQN--PRVKI----EASGNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCHHHHH-HHHHcCCCEEEECC-CCHHHHHHHHHHHHhcC--CCeEE----EEECCCCHHHHHHHHHcCCCEEEEch
Confidence 3466665 56899999999994 67799999888876544 44443 33333 4678888877 69998864
No 252
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=53.68 E-value=1.4e+02 Score=29.43 Aligned_cols=148 Identities=17% Similarity=0.164 Sum_probs=84.8
Q ss_pred CCCCccCHHHHHHHhhh--cCCcEEEEecCCCHHHHHHHHHHHHhcCCCC-CceEEEEecCHHhHhhHHHHHhhC-cEEE
Q 014746 202 PTLTDKDKEVISTWGAR--NNIDFLSLSHTRGAEDVRHARDFLSQLGDLG-QTQIFAKIENTEGLTHFDEILHEA-DGII 277 (419)
Q Consensus 202 p~lte~D~~di~~~~l~--~g~d~I~lsfV~saedv~~v~~~l~~~~~~~-~~~IiaKIEt~~gv~nl~eI~~~s-DgIm 277 (419)
|..|+.|.+.+-+.+.+ .++..|+++ +..+..+++.|...+ . ++++.+=|==|.|-...+.-+..+ .++-
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~~a~~~L~~~~--~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~ 94 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIPIARKTLREQG--TPEIRIATVTNFPHGNDDIDIALAETRAAIA 94 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHHHHHHHhcccC--CCCCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 56677777776556677 477777765 678888888885333 2 577777775555555554444332 1110
Q ss_pred EeCC--CccCCCCc---hhHHHHH---HHHHHHHHHcCCc--EEE-EccccccccCCCcchhh-HhHHH-HHHHcCCceE
Q 014746 278 LARG--NLGVDLPP---EKVFLFQ---KAALYKCNMAGKP--AVV-TRVVDSMTDNLRPTRAE-ATDVA-NAVLDGSDAI 344 (419)
Q Consensus 278 Iarg--DLg~elg~---e~v~~~q---k~Ii~a~~~~gkp--vi~-TqmLeSM~~~~~PtraE-v~Dv~-nav~~G~D~v 344 (419)
-|-- |+-+.+|. .+...+. +++..+|.. |+| ||+ |..| |..| +.... -++..|+|.|
T Consensus 95 ~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt~~L---------~~ee~i~~a~~~a~~aGADFV 164 (257)
T PRK05283 95 YGADEVDVVFPYRALMAGNEQVGFELVKACKEACAA-NVLLKVIIETGEL---------KDEALIRKASEIAIKAGADFI 164 (257)
T ss_pred cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCC-CceEEEEEecccc---------CCHHHHHHHHHHHHHhCCCEE
Confidence 0111 22223332 1333344 455555532 454 566 6655 3443 43333 4567799987
Q ss_pred EecccccCCCCH----HHHHHHHHHHHHH
Q 014746 345 LLGAETLRGLYP----VETISIVGKICAE 369 (419)
Q Consensus 345 mLs~ETa~G~yP----~eaV~~~~~I~~~ 369 (419)
==| .|..| +|.|+.|++.+++
T Consensus 165 KTS----TGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 165 KTS----TGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred EcC----CCCCCCCCCHHHHHHHHHHHHh
Confidence 655 66554 7999999988864
No 253
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=53.65 E-value=1.5e+02 Score=29.75 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=20.4
Q ss_pred HHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHh
Q 014746 335 NAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 335 nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
.|-..|+|++|+..=--...-+-+.++..+.|++.++
T Consensus 98 ~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 98 ALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred HHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 4445577777776432222223566666777777663
No 254
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=53.54 E-value=22 Score=38.42 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=44.0
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 26 FPAMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 26 ~~~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
...+-.+.+.+|+. +..+..+.|+++|+++.=+.-|||..++..+.|+++|+.
T Consensus 228 ~~grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~ 280 (502)
T PRK07107 228 SSKRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREK 280 (502)
T ss_pred hccCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHh
Confidence 34466677888885 567899999999999999999999988888888888874
No 255
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=53.40 E-value=1.1e+02 Score=29.91 Aligned_cols=87 Identities=20% Similarity=0.146 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhC--cEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEcc
Q 014746 238 ARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEA--DGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRV 315 (419)
Q Consensus 238 v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~s--DgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~Tqm 315 (419)
+++.|.+.. .-...|..+-++... ||+..+ |.++|. .|=+.-.+..+ ..++.+|+.+|.++++
T Consensus 10 lk~~l~~g~--~~~g~~~~~~sp~~~----e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~i~a~~~~g~~~lV--- 74 (256)
T PRK10558 10 FKAALAAKQ--VQIGCWSALANPITT----EVLGLAGFDWLVLD-----GEHAPNDVSTF-IPQLMALKGSASAPVV--- 74 (256)
T ss_pred HHHHHHcCC--ceEEEEEcCCCcHHH----HHHHhcCCCEEEEc-----cccCCCCHHHH-HHHHHHHhhcCCCcEE---
Confidence 556665432 334567777676544 555553 999984 22222233433 4688899999999997
Q ss_pred ccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 316 VDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 316 LeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.-|.+ +-..+.+++-.|+++||+.
T Consensus 75 -----Rvp~~---~~~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 75 -----RVPTN---EPVIIKRLLDIGFYNFLIP 98 (256)
T ss_pred -----ECCCC---CHHHHHHHhCCCCCeeeec
Confidence 22333 3455667777899999984
No 256
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=53.13 E-value=1.9e+02 Score=29.97 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=82.1
Q ss_pred CccCHHHHHHHhhhcCCcEEEE-------ecCCCHHHHHHHHHHHHhcCC--CCCceEEEEe--cCHHhHhhHHHHHhh-
Q 014746 205 TDKDKEVISTWGARNNIDFLSL-------SHTRGAEDVRHARDFLSQLGD--LGQTQIFAKI--ENTEGLTHFDEILHE- 272 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~l-------sfV~saedv~~v~~~l~~~~~--~~~~~IiaKI--Et~~gv~nl~eI~~~- 272 (419)
+.+....+.....+.|+|+|.. +|..-.|-++.+++.+++.+. .....+++-| .+.+.+++.+...++
T Consensus 144 d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~G 223 (367)
T cd08205 144 SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAG 223 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcC
Confidence 3334444434556789999842 455555666666666544320 1445667777 456777777777666
Q ss_pred CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhh--HhHHHHHHHcCCceEEeccc
Q 014746 273 ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAE--ATDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 273 sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraE--v~Dv~nav~~G~D~vmLs~E 349 (419)
+|++|+.+.= +++.. +..+.. ..+.|+.. -.+.-+|..+|.---.. ...++.. .|+|.+.-.
T Consensus 224 ad~vmv~~~~----~g~~~----~~~l~~---~~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~Rl--aGad~~~~~-- 288 (367)
T cd08205 224 ANALLINPNL----VGLDA----LRALAE---DPDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRL--AGADAVIFP-- 288 (367)
T ss_pred CCEEEEeccc----ccccH----HHHHHh---cCCCeEEEccCcccccccCCCCcCCHHHHHHHHHH--cCCCccccC--
Confidence 5999997652 22222 222222 23788777 66655555544311111 1223333 599998887
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 014746 350 TLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 350 Ta~G~yP~eaV~~~~~I~~~ 369 (419)
|..|+|+.. -+...++++.
T Consensus 289 ~~~gk~~~~-~~~~~~la~~ 307 (367)
T cd08205 289 GPGGRFPFS-REECLAIARA 307 (367)
T ss_pred CCccCcCCC-HHHHHHHHHH
Confidence 567887533 3333344443
No 257
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=53.06 E-value=1.8e+02 Score=26.47 Aligned_cols=119 Identities=18% Similarity=0.084 Sum_probs=63.8
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHh-hCcEEEEeCCCcc-------CC
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILH-EADGIILARGNLG-------VD 286 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~-~sDgImIargDLg-------~e 286 (419)
.+.+.|+|+|.++.=. -+...++..+. ....|-+-+-|.+-+ .+..+ -+|.+++++=-=+ ..
T Consensus 68 la~~~g~~GvHl~~~~--~~~~~~r~~~~-----~~~~ig~s~h~~~e~---~~a~~~g~dyi~~~~v~~t~~k~~~~~~ 137 (196)
T TIGR00693 68 LALALGADGVHLGQDD--LPASEARALLG-----PDKIIGVSTHNLEEL---AEAEAEGADYIGFGPIFPTPTKKDPAPP 137 (196)
T ss_pred HHHHcCCCEEecCccc--CCHHHHHHhcC-----CCCEEEEeCCCHHHH---HHHhHcCCCEEEECCccCCCCCCCCCCC
Confidence 4578899999887421 23344444432 233455544444332 22222 3689888663111 12
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHH
Q 014746 287 LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISI 362 (419)
Q Consensus 287 lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~ 362 (419)
.|++.+..+ ...+ .++|++. ..+ +. .++..+...|+|++.+.+.-..-..|.++++.
T Consensus 138 ~g~~~l~~~----~~~~--~~~pv~a~GGI----------~~---~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~ 195 (196)
T TIGR00693 138 AGVELLREI----AATS--IDIPIVAIGGI----------TL---ENAAEVLAAGADGVAVVSAIMQAADPKAAAKQ 195 (196)
T ss_pred CCHHHHHHH----HHhc--CCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHh
Confidence 233322222 2211 2589887 442 22 34556667799999998776555678777653
No 258
>PRK06852 aldolase; Validated
Probab=53.02 E-value=72 Score=32.28 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=55.8
Q ss_pred cCCcEEE-EccccccccC--CCcchhhHhHHHHHHHcC------CceEEecccccCC-CCHHHHHHHHHHHHHHHhc---
Q 014746 306 AGKPAVV-TRVVDSMTDN--LRPTRAEATDVANAVLDG------SDAILLGAETLRG-LYPVETISIVGKICAEAKT--- 372 (419)
Q Consensus 306 ~gkpvi~-TqmLeSM~~~--~~PtraEv~Dv~nav~~G------~D~vmLs~ETa~G-~yP~eaV~~~~~I~~~aE~--- 372 (419)
..+|.|+ ..-=.|+..+ +.|...-+++|-.|+..| +|||..+-- .| .|=-+.++.+.+|++++++
T Consensus 91 ~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~--~Gs~~E~~ml~~l~~v~~ea~~~Gl 168 (304)
T PRK06852 91 PDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIY--LGSEYESEMLSEAAQIIYEAHKHGL 168 (304)
T ss_pred CCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEe--cCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 3677777 3322222221 145555668899999988 889887633 33 3446788888888888887
Q ss_pred -----------C-Cc-ChHHHHHHHHHHHHHCCC
Q 014746 373 -----------T-NA-TSESALKVALDYGKAHGV 393 (419)
Q Consensus 373 -----------~-~~-~~~~~~~~a~~~~~~~~~ 393 (419)
. .+ ...+.+..|...+.+.|-
T Consensus 169 Pll~~~yprG~~i~~~~~~~~ia~aaRiaaELGA 202 (304)
T PRK06852 169 IAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGA 202 (304)
T ss_pred cEEEEeeccCcccCCCccHHHHHHHHHHHHHHcC
Confidence 0 11 222588888888888873
No 259
>PRK08185 hypothetical protein; Provisional
Probab=52.92 E-value=2.5e+02 Score=28.08 Aligned_cols=119 Identities=11% Similarity=0.212 Sum_probs=79.3
Q ss_pred CCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCC--
Q 014746 249 GQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLR-- 324 (419)
Q Consensus 249 ~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~-- 324 (419)
.++++...+....-++.+..-++. .+.||+---+ +++++--..-++++..|+++|.++=. -..+-.=.....
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~----l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSL----LPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC----CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 356788888777766666655555 3789997555 47777777889999999999999855 222311000000
Q ss_pred cc---hhhHhHHHHHHHc-CCceEEecccccCCCCHH-----HHHHHHHHHHHHHh
Q 014746 325 PT---RAEATDVANAVLD-GSDAILLGAETLRGLYPV-----ETISIVGKICAEAK 371 (419)
Q Consensus 325 Pt---raEv~Dv~nav~~-G~D~vmLs~ETa~G~yP~-----eaV~~~~~I~~~aE 371 (419)
.+ -....++..|+.. |+|++-.|--|+-|.||- --.+.+++|.+...
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~ 198 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD 198 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC
Confidence 01 1123344677776 999999999999999954 35777777766553
No 260
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=52.64 E-value=1.2e+02 Score=29.88 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=51.9
Q ss_pred CcEEEEe-CCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccc
Q 014746 273 ADGIILA-RGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (419)
Q Consensus 273 sDgImIa-rgDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ET 350 (419)
.||+++. -.--+..+..++-..+.+..++.++ -..|++. +. ..-|+.=+.-.-.|-..|+|++|+..=.
T Consensus 33 v~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv~--------~~s~~~~i~~a~~a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 33 TDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGTG--------SNATEEAISLTKFAEDVGADGFLVVTPY 103 (285)
T ss_pred CCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeCC--------CccHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 5888872 2222234444444444455555442 2467776 32 1223332333445677799999997655
Q ss_pred cCCCCHHHHHHHHHHHHHHHhc
Q 014746 351 LRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 351 a~G~yP~eaV~~~~~I~~~aE~ 372 (419)
-...-+-+.++....|++.+..
T Consensus 104 y~~~~~~~i~~~~~~i~~~~~~ 125 (285)
T TIGR00674 104 YNKPTQEGLYQHFKAIAEEVDL 125 (285)
T ss_pred CCCCCHHHHHHHHHHHHhcCCC
Confidence 4444456777888888887754
No 261
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=52.46 E-value=2.3e+02 Score=27.53 Aligned_cols=159 Identities=11% Similarity=0.097 Sum_probs=83.9
Q ss_pred HHHHHHHhh-hcCCcEEEEecCCCHHH--HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCc-EEEEeCCCcc
Q 014746 209 KEVISTWGA-RNNIDFLSLSHTRGAED--VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEAD-GIILARGNLG 284 (419)
Q Consensus 209 ~~di~~~~l-~~g~d~I~lsfV~saed--v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sD-gImIargDLg 284 (419)
.+.+. +.. +.|+|+|+++ ++|+.- +.++++. .+++++-.|| .+++.+.+...... ||+=.+|
T Consensus 50 ~~~~~-~L~~~~g~d~ivIa-CNTA~a~~~~~l~~~-------~~iPii~iie--~~v~~a~~~~~~~~IgvLAT~~--- 115 (251)
T TIGR00067 50 LELLT-FLKERHNIKLLVVA-CNTASALALEDLQRN-------FDFPVVGVIE--PAIKAAIRLTANGRVLVIATNA--- 115 (251)
T ss_pred HHHHH-HHHHhCCCCEEEEe-CchHHHHHHHHHHHH-------CCCCEEeecH--HHHHHHHHhCCCCeEEEEeCHH---
Confidence 34443 556 8899999999 677752 4444432 3478998886 23333332211111 3332222
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCCcEEE-E---ccccccccCCCcch----hhHhHHHHHH-HcCCceEEecccccCCCC
Q 014746 285 VDLPPEKVFLFQKAALYKCNMAGKPAVV-T---RVVDSMTDNLRPTR----AEATDVANAV-LDGSDAILLGAETLRGLY 355 (419)
Q Consensus 285 ~elg~e~v~~~qk~Ii~a~~~~gkpvi~-T---qmLeSM~~~~~Ptr----aEv~Dv~nav-~~G~D~vmLs~ETa~G~y 355 (419)
.-+-...|+.+ .++|..+.+ . +=|=.|+++..... ..+.+..+.+ ..|+|.++|. -=+|
T Consensus 116 ----Ti~s~~y~~~i----~~~~~~~~v~~~~~~~lv~~Ie~g~~~~~~~~~~l~~~l~~l~~~~~d~lILG----CTh~ 183 (251)
T TIGR00067 116 ----TIKSNAYHEAL----KEIANDLLVEMLACPELVPLAEAGLLGEDYALECLKRYLRPLLDTLPDTVVLG----CTHF 183 (251)
T ss_pred ----HHhhhHHHHHH----HHhCCCCEEEecCCHHHHHHHHcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEC----cCCh
Confidence 11223333333 233443333 2 11223667665532 2244444443 4599999997 7789
Q ss_pred HHHHHHHHHHHHHHHhcCC--cChHHHHHHHHHHHHHCCCCCC
Q 014746 356 PVETISIVGKICAEAKTTN--ATSESALKVALDYGKAHGVIKS 396 (419)
Q Consensus 356 P~eaV~~~~~I~~~aE~~~--~~~~~~~~~a~~~~~~~~~~~~ 396 (419)
|+-. +.++++.. +..+ +..+.+.+.+.+++..++++..
T Consensus 184 P~l~-~~i~~~~~--~~v~~IDp~~~la~~~~~~l~~~~~~~~ 223 (251)
T TIGR00067 184 PLLK-EEIEQYLP--EHVRLVDSGVHTARRTAWLLEHKGPLAK 223 (251)
T ss_pred HHHH-HHHHHHcC--CCcEEECCHHHHHHHHHHHHhhcccccc
Confidence 9622 12222110 1111 5578889999999988887654
No 262
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=52.28 E-value=2.2e+02 Score=27.25 Aligned_cols=179 Identities=9% Similarity=0.036 Sum_probs=99.3
Q ss_pred HHHHHHhhhcCCcEEEEec------C--CCHHHHHHHHHHHHhcCCCCCceEEEE----------e------cCHHhHhh
Q 014746 210 EVISTWGARNNIDFLSLSH------T--RGAEDVRHARDFLSQLGDLGQTQIFAK----------I------ENTEGLTH 265 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~lsf------V--~saedv~~v~~~l~~~~~~~~~~IiaK----------I------Et~~gv~n 265 (419)
+.+ +.+.+.|+++|=+.. . -+..+++++++.+.+.| +.+.+- + +..++++.
T Consensus 17 ~~l-~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~g----l~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~ 91 (275)
T PRK09856 17 HAF-RDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQ----MPIIGYTPETNGYPYNMMLGDEHMRRESLDM 91 (275)
T ss_pred HHH-HHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcC----CeEEEecCcccCcCccccCCCHHHHHHHHHH
Confidence 345 477899999998842 1 23467899999998876 333331 1 11234555
Q ss_pred HHHHHhh-----CcEEEEeCCCccCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHH
Q 014746 266 FDEILHE-----ADGIILARGNLGVDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN 335 (419)
Q Consensus 266 l~eI~~~-----sDgImIargDLg~elg~----e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~n 335 (419)
+...++. +..+.+.++..+..-.. +.+...-+++...|.++|+.+.+ +.. ....+..+|.++..++.+
T Consensus 92 ~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~--~~~~~~~~t~~~~~~l~~ 169 (275)
T PRK09856 92 IKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLT--PYESNVVCNANDVLHALA 169 (275)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC--CCcccccCCHHHHHHHHH
Confidence 5555554 47888877755432222 34444557788889999988776 421 111244667788888887
Q ss_pred HHHcCCceEEeccccc----CCCCHHHHHHHHHHHHHHHhc-----------CCcChHHHHHHHHHHHHHCCCCCCCCE
Q 014746 336 AVLDGSDAILLGAETL----RGLYPVETISIVGKICAEAKT-----------TNATSESALKVALDYGKAHGVIKSHDR 399 (419)
Q Consensus 336 av~~G~D~vmLs~ETa----~G~yP~eaV~~~~~I~~~aE~-----------~~~~~~~~~~~a~~~~~~~~~~~~gd~ 399 (419)
.+. .+.+.+.-+|. .|.-|.+.++.+..-+...-- .+.+.+--....++.+++.|+ .|..
T Consensus 170 ~~~--~~~v~~~~D~~h~~~~~~~~~~~i~~~~~rI~~vHi~D~~~~~~~~~~pG~G~id~~~i~~~L~~~gy--~g~~ 244 (275)
T PRK09856 170 LVP--SPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTHYIPGEGKMPLRELMRDIIDRGY--EGYC 244 (275)
T ss_pred HcC--CCcceeEEeecchhcCCCCHHHHHHHhCCcEEEEEEEcCCCCCCCCcCCCCCCCCHHHHHHHHHHcCC--CceE
Confidence 763 33333322332 344455555443211000000 012233346777778888887 5543
No 263
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=52.24 E-value=2.7e+02 Score=28.75 Aligned_cols=131 Identities=15% Similarity=0.083 Sum_probs=76.4
Q ss_pred cCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccC-
Q 014746 207 KDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGV- 285 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~- 285 (419)
.|.-|+ ++..|+|+|-++.-.- .+..+|.++. .+..|-+-.-|++.+.+.. -.-+|.|.+|+---+.
T Consensus 207 ND~vdl---Al~~~aDGVHLgq~dl--~~~~aR~llg-----~~~iIG~S~Hs~~e~~~A~--~~GaDYI~lGPvf~T~t 274 (347)
T PRK02615 207 NDRVDI---ALAVDADGVHLGQEDL--PLAVARQLLG-----PEKIIGRSTTNPEEMAKAI--AEGADYIGVGPVFPTPT 274 (347)
T ss_pred eChHHH---HHHcCCCEEEeChhhc--CHHHHHHhcC-----CCCEEEEecCCHHHHHHHH--HcCCCEEEECCCcCCCC
Confidence 355555 3688999999985321 1445555442 3333444444433332221 1236999998753321
Q ss_pred -----CCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHH
Q 014746 286 -----DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVET 359 (419)
Q Consensus 286 -----elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~ea 359 (419)
..|++ .+-+.+.....|++. ..+ +.. ++......|+|+|.+.+.-.....|.++
T Consensus 275 Kp~~~~~Gle-------~l~~~~~~~~iPv~AiGGI----------~~~---ni~~l~~~Ga~gVAvisaI~~a~dp~~~ 334 (347)
T PRK02615 275 KPGKAPAGLE-------YLKYAAKEAPIPWFAIGGI----------DKS---NIPEVLQAGAKRVAVVRAIMGAEDPKQA 334 (347)
T ss_pred CCCCCCCCHH-------HHHHHHHhCCCCEEEECCC----------CHH---HHHHHHHcCCcEEEEeHHHhCCCCHHHH
Confidence 22322 222334466899987 441 222 3445556699999998877667789999
Q ss_pred HHHHHHHHHH
Q 014746 360 ISIVGKICAE 369 (419)
Q Consensus 360 V~~~~~I~~~ 369 (419)
++.+.+.+.+
T Consensus 335 ~~~l~~~l~~ 344 (347)
T PRK02615 335 TQELLKQLSR 344 (347)
T ss_pred HHHHHHHHhc
Confidence 9888876654
No 264
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=52.21 E-value=1.6e+02 Score=29.08 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=49.6
Q ss_pred HHhhhcCCcEEEEe------cCCCHHHHHHHHHH-HHhcCCCCCceEEEEecCHHhHhhHHHHHhh-----CcEEEEeCC
Q 014746 214 TWGARNNIDFLSLS------HTRGAEDVRHARDF-LSQLGDLGQTQIFAKIENTEGLTHFDEILHE-----ADGIILARG 281 (419)
Q Consensus 214 ~~~l~~g~d~I~ls------fV~saedv~~v~~~-l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-----sDgImIarg 281 (419)
++.++.|+|+|.+. +--|.++-.++.+. .+..+ .++.||+-+- . +.+..-+.++. +|++|+.+-
T Consensus 28 ~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~--~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~~pP 103 (289)
T cd00951 28 EWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA--GRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILLLPP 103 (289)
T ss_pred HHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--CCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECCC
Confidence 36688899988764 33445554444443 33333 5677888774 2 33333333332 488888665
Q ss_pred CccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 282 NLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 282 DLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
-... .+.+.+...-+.+ |.+.+.|+++
T Consensus 104 ~y~~-~~~~~i~~~f~~v---~~~~~~pi~l 130 (289)
T cd00951 104 YLTE-APQEGLYAHVEAV---CKSTDLGVIV 130 (289)
T ss_pred CCCC-CCHHHHHHHHHHH---HhcCCCCEEE
Confidence 4321 2223444444444 4445788776
No 265
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=52.20 E-value=37 Score=31.25 Aligned_cols=64 Identities=23% Similarity=0.313 Sum_probs=46.8
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhH--hhHHHHHhhC-cEEEEeC
Q 014746 209 KEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGL--THFDEILHEA-DGIILAR 280 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv--~nl~eI~~~s-DgImIar 280 (419)
.+.+. -+++.|+|+|.+=.. ++++++++.+.+...+ .+ .+||-.-|+ +|+.++++.- |.|.+|.
T Consensus 90 ~ee~~-ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~--~~----v~ie~SGGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 90 LEEAE-EALEAGADIIMLDNM-SPEDLKEAVEELRELN--PR----VKIEASGGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHH-HHHHTT-SEEEEES--CHHHHHHHHHHHHHHT--TT----SEEEEESSSSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHH-HHHHhCCCEEEecCc-CHHHHHHHHHHHhhcC--Cc----EEEEEECCCCHHHHHHHHhcCCCEEEcCh
Confidence 34454 458999999999876 7899999999887766 44 456655554 5888888875 9998863
No 266
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=51.66 E-value=63 Score=31.39 Aligned_cols=62 Identities=6% Similarity=-0.038 Sum_probs=39.2
Q ss_pred CCeEEEEec--CCCC-----C--CHHHHHHHHHcCCC--EEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEE
Q 014746 28 AMTKIVGTL--GPRS-----R--SVEIISGCLNAGMS--VARFDFSWGDTAYHQETLENLKIAIKSTKKLCAV 89 (419)
Q Consensus 28 ~~tkIi~Ti--Gp~~-----~--~~~~i~~li~~Gm~--v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~I 89 (419)
..++++.++ |... . -...+++.++.|++ -+|.|+...+..+..+.+..+++++.++|.|+-+
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv 141 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLA 141 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 457788887 4222 1 12458899999998 4566654433344556677777777777877644
No 267
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=50.84 E-value=46 Score=29.64 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=37.8
Q ss_pred HhHhhHHHHHh--hCc--EEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 261 EGLTHFDEILH--EAD--GIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 261 ~gv~nl~eI~~--~sD--gImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+.++++++.+. -.| .+++|-.|.....+.+++..-.+.++..+++.|.++++
T Consensus 46 ~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il 101 (183)
T cd04501 46 QMLVRFYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVIL 101 (183)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 34444544332 235 45568889987778888888889999999999998887
No 268
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=50.77 E-value=29 Score=28.25 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=29.7
Q ss_pred cccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcEE
Q 014746 136 SGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAIL 185 (419)
Q Consensus 136 ~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~l 185 (419)
.++.+.+++||+|..- .| +..+| .+++++.+..++..|..+
T Consensus 32 ~~m~~~L~~Gd~VvT~----gG-i~G~V----~~i~d~~v~vei~~g~~i 72 (84)
T TIGR00739 32 KKLIESLKKGDKVLTI----GG-IIGTV----TKIAENTIVIELNDNTEI 72 (84)
T ss_pred HHHHHhCCCCCEEEEC----CC-eEEEE----EEEeCCEEEEEECCCeEE
Confidence 4678899999999998 55 55566 455778887776555555
No 269
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=50.48 E-value=12 Score=35.56 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=28.1
Q ss_pred HHHHHHHcCCCEEEEec------------cCCCHHHHHHHHHHHHHH
Q 014746 45 IISGCLNAGMSVARFDF------------SWGDTAYHQETLENLKIA 79 (419)
Q Consensus 45 ~i~~li~~Gm~v~RiN~------------SHg~~e~~~~~i~~ir~a 79 (419)
.-+.|.+.|+.+.|+|| -+|..++....++++|.-
T Consensus 52 la~~l~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~ 98 (210)
T COG2945 52 LARALVKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQAR 98 (210)
T ss_pred HHHHHHhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhh
Confidence 45778999999999999 346677788888888863
No 270
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=50.41 E-value=1.9e+02 Score=27.73 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=75.8
Q ss_pred EEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHH------
Q 014746 223 FLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQ------ 296 (419)
Q Consensus 223 ~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~q------ 296 (419)
.|.+=-..++++...+.+.|-+.|. ..|=.-.-|+.+.+-+.++.+....++||-|=. +..+.+..+.
T Consensus 15 vI~Vlr~~~~e~a~~~a~Ali~gGi---~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTV---L~~~q~~~a~~aGa~f 88 (211)
T COG0800 15 VVPVIRGDDVEEALPLAKALIEGGI---PAIEITLRTPAALEAIRALAKEFPEALIGAGTV---LNPEQARQAIAAGAQF 88 (211)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHcCC---CeEEEecCCCCHHHHHHHHHHhCcccEEccccc---cCHHHHHHHHHcCCCE
Confidence 3555567888888888888877652 235556779999999999999887888887732 2223333333
Q ss_pred -------HHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEe-ccccc
Q 014746 297 -------KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL-GAETL 351 (419)
Q Consensus 297 -------k~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL-s~ETa 351 (419)
.+++++|+.+|.|.+= --+=.+.+..|...|++++=+ .+|+.
T Consensus 89 iVsP~~~~ev~~~a~~~~ip~~P-------------G~~TptEi~~Ale~G~~~lK~FPa~~~ 138 (211)
T COG0800 89 IVSPGLNPEVAKAANRYGIPYIP-------------GVATPTEIMAALELGASALKFFPAEVV 138 (211)
T ss_pred EECCCCCHHHHHHHHhCCCcccC-------------CCCCHHHHHHHHHcChhheeecCcccc
Confidence 6799999999999862 222234557888889998754 44443
No 271
>PRK10812 putative DNAse; Provisional
Probab=50.32 E-value=2.5e+02 Score=27.51 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=61.2
Q ss_pred cCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCC-CCCceEEE-EecCHHhHhhHHHHHhhCcEEEEeCCCcc
Q 014746 207 KDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGD-LGQTQIFA-KIENTEGLTHFDEILHEADGIILARGNLG 284 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~-~~~~~Iia-KIEt~~gv~nl~eI~~~sDgImIargDLg 284 (419)
.|.+.+.+.+.+.|+..++.+- .+.++...+.++...... -..+.+.. .+.+...++.+.+++... -++|=|..|
T Consensus 20 ~d~~~vl~~a~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~~~~~~l~~~~~~~--~vvaIGEiG 96 (265)
T PRK10812 20 KDVDDVLAKAAARDVKFCLAVA-TTLPGYRHMRDLVGERDNVVFSCGVHPLNQDEPYDVEELRRLAAEE--GVVAMGETG 96 (265)
T ss_pred cCHHHHHHHHHHcCCCEEEEeC-CCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCChhHHHHHHHHhcCC--CEEEEEeee
Confidence 4665555577889999887764 467888887777654320 00001111 012244566666665433 344557777
Q ss_pred CCCCch-hHHHHH----HHHHHHHHHcCCcEEE-E
Q 014746 285 VDLPPE-KVFLFQ----KAALYKCNMAGKPAVV-T 313 (419)
Q Consensus 285 ~elg~e-~v~~~q----k~Ii~a~~~~gkpvi~-T 313 (419)
.+.... .....| ++.+..|++.++|+++ +
T Consensus 97 LD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~ 131 (265)
T PRK10812 97 LDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHT 131 (265)
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 776531 123445 4567788999999998 6
No 272
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=50.31 E-value=2.1e+02 Score=28.21 Aligned_cols=90 Identities=17% Similarity=0.028 Sum_probs=50.7
Q ss_pred CcEEEEeC-CCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhH-hHHHHHHHcCCceEEeccc
Q 014746 273 ADGIILAR-GNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEA-TDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 273 sDgImIar-gDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv-~Dv~nav~~G~D~vmLs~E 349 (419)
.+||+++- .==+..+..++-..+.+.+++.++ -.+|++. +. .++-.|. .-.-.|...|+|++|+..=
T Consensus 39 v~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagvg---------~~~t~~ai~~a~~a~~~Gad~v~v~~P 108 (293)
T PRK04147 39 IDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQVG---------SVNTAEAQELAKYATELGYDAISAVTP 108 (293)
T ss_pred CCEEEECCCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecCC---------CCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 57888742 111233444444455555555543 2467776 42 3333444 3344667789999999743
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhc
Q 014746 350 TLRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 350 Ta~G~yP~eaV~~~~~I~~~aE~ 372 (419)
--...-+-+.++....|+..+.-
T Consensus 109 ~y~~~~~~~l~~~f~~va~a~~l 131 (293)
T PRK04147 109 FYYPFSFEEICDYYREIIDSADN 131 (293)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCC
Confidence 33333345777788888876654
No 273
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=49.91 E-value=71 Score=30.32 Aligned_cols=90 Identities=21% Similarity=0.165 Sum_probs=55.0
Q ss_pred HHcCCcEEEEccccccccCCCc-----chhhH----hHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHhc--
Q 014746 304 NMAGKPAVVTRVVDSMTDNLRP-----TRAEA----TDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAKT-- 372 (419)
Q Consensus 304 ~~~gkpvi~TqmLeSM~~~~~P-----traEv----~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~-- 372 (419)
+..++|+.+ |+. |+. |..|+ .|+..+...|+|++.+..=|.-|.--.++.+.+.+.+...+-
T Consensus 47 ~~~~ipv~v------MIR-pr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tF 119 (201)
T PF03932_consen 47 EAVDIPVHV------MIR-PRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTF 119 (201)
T ss_dssp HHTTSEEEE------E---SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE
T ss_pred hhcCCceEE------EEC-CCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEE
Confidence 378999887 444 443 34444 788999999999999999899999988888777766654332
Q ss_pred --CCcChHHHHHHHHHHHHHCCCCCCCCEEEEEeec
Q 014746 373 --TNATSESALKVALDYGKAHGVIKSHDRVVICQKV 406 (419)
Q Consensus 373 --~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~ 406 (419)
+.+...+ ...|++.+.+.|+ |+|. |||-
T Consensus 120 HRAfD~~~d-~~~al~~L~~lG~----~rVL-TSGg 149 (201)
T PF03932_consen 120 HRAFDEVPD-PEEALEQLIELGF----DRVL-TSGG 149 (201)
T ss_dssp -GGGGGSST-HHHHHHHHHHHT-----SEEE-ESTT
T ss_pred eCcHHHhCC-HHHHHHHHHhcCC----CEEE-CCCC
Confidence 1111111 4456667777776 5554 6665
No 274
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=49.79 E-value=1.6e+02 Score=29.00 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=52.6
Q ss_pred HHhhhcCCcEEEEecC------CCHHHHHHHHH-HHHhcCCCCCceEEEEec---CHHhHhhHHHHHhh-CcEEEEeCCC
Q 014746 214 TWGARNNIDFLSLSHT------RGAEDVRHARD-FLSQLGDLGQTQIFAKIE---NTEGLTHFDEILHE-ADGIILARGN 282 (419)
Q Consensus 214 ~~~l~~g~d~I~lsfV------~saedv~~v~~-~l~~~~~~~~~~IiaKIE---t~~gv~nl~eI~~~-sDgImIargD 282 (419)
++.++.|+++|++.-- =|.++=.++-+ ..+... .++.|++-+= |.++++.+....+. +|++|+.+-.
T Consensus 29 ~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~--~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 29 DYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN--GRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred HHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC--CCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 4778899999885421 13333333333 333333 4577888774 45555555555444 5999997665
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+.. .+-+.+...-+.|. .+.+.|+++
T Consensus 107 ~~~-~~~~~i~~~~~~ia---~~~~~pv~l 132 (292)
T PRK03170 107 YNK-PTQEGLYQHFKAIA---EATDLPIIL 132 (292)
T ss_pred CCC-CCHHHHHHHHHHHH---hcCCCCEEE
Confidence 432 22234444445554 445788876
No 275
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=49.71 E-value=2.2e+02 Score=27.87 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=54.9
Q ss_pred HHHHHhh-CcEEEEe-CCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhH-hHHHHHHHcCC
Q 014746 266 FDEILHE-ADGIILA-RGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEA-TDVANAVLDGS 341 (419)
Q Consensus 266 l~eI~~~-sDgImIa-rgDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv-~Dv~nav~~G~ 341 (419)
++-.++. .||++++ ..==+..+..++-..+.+.+++.++ -..|++. +. ..+-.|. .-.-.|...|+
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-GRVPVIAGVG---------ANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-TSSEEEEEEE---------SSSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-CceEEEecCc---------chhHHHHHHHHHHHhhcCc
Confidence 3444444 6899994 2122233333444444444444432 3568887 54 2233344 34446677899
Q ss_pred ceEEecccccCCCCHHHHHHHHHHHHHHHhc
Q 014746 342 DAILLGAETLRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 342 D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~ 372 (419)
|++|+..=--...-+-+.+++.+.|+.....
T Consensus 98 d~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~ 128 (289)
T PF00701_consen 98 DAVLVIPPYYFKPSQEELIDYFRAIADATDL 128 (289)
T ss_dssp SEEEEEESTSSSCCHHHHHHHHHHHHHHSSS
T ss_pred eEEEEeccccccchhhHHHHHHHHHHhhcCC
Confidence 9999875444445677888999999966554
No 276
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=49.58 E-value=1.6e+02 Score=28.75 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=49.9
Q ss_pred CcEEEEeCCCc--cCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEeccc
Q 014746 273 ADGIILARGNL--GVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 273 sDgImIargDL--g~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~E 349 (419)
.||+++. |-- +..+..++-..+.+...+.++ ...|++. .. ...|+.=+.-.-.|...|+|++|+..-
T Consensus 35 v~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~--------~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 35 TDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGTG--------SNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred CCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEeccC--------CccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 5788775 222 233343444444444444432 2456665 32 122333334444666778888888765
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhc
Q 014746 350 TLRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 350 Ta~G~yP~eaV~~~~~I~~~aE~ 372 (419)
.-...-+-+.+++.+.|++.+..
T Consensus 105 ~~~~~~~~~l~~~~~~ia~~~~~ 127 (284)
T cd00950 105 YYNKPSQEGLYAHFKAIAEATDL 127 (284)
T ss_pred ccCCCCHHHHHHHHHHHHhcCCC
Confidence 55444567778888888876543
No 277
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=49.38 E-value=2.9e+02 Score=27.76 Aligned_cols=124 Identities=11% Similarity=0.097 Sum_probs=82.1
Q ss_pred hhhcCCcEEEE--------------ecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeC
Q 014746 216 GARNNIDFLSL--------------SHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILAR 280 (419)
Q Consensus 216 ~l~~g~d~I~l--------------sfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIar 280 (419)
|-++|+-.|++ --.++++||+++++.. +++||+++=.-- +...+++.++ +|-|
T Consensus 24 ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V-------~iPVIGi~K~~~-~~Ea~~L~eaGvDiI---- 91 (283)
T cd04727 24 AEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV-------SIPVMAKVRIGH-FVEAQILEALGVDMI---- 91 (283)
T ss_pred HHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC-------CCCeEEeeehhH-HHHHHHHHHcCCCEE----
Confidence 35667666665 2356778888877653 477888764333 6667777766 5766
Q ss_pred CCccCCCCchhHHHHHHHHHHHHHH-cCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHH
Q 014746 281 GNLGVDLPPEKVFLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVE 358 (419)
Q Consensus 281 gDLg~elg~e~v~~~qk~Ii~a~~~-~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~e 358 (419)
| ..+-.-+ . ..++...+. ++.|++. . +.+.+.-+++..|+|++=-+.|--.| +-.|
T Consensus 92 -D-aT~r~rP-~----~~~~~~iK~~~~~l~MAD~--------------stleEal~a~~~Gad~I~TTl~gyT~-~~~~ 149 (283)
T cd04727 92 -D-ESEVLTP-A----DEEHHIDKHKFKVPFVCGA--------------RNLGEALRRISEGAAMIRTKGEAGTG-NVVE 149 (283)
T ss_pred -e-ccCCCCc-H----HHHHHHHHHHcCCcEEccC--------------CCHHHHHHHHHCCCCEEEecCCCCCC-cHHH
Confidence 4 2221111 1 334444444 4888774 2 24566778999999999888776677 7899
Q ss_pred HHHHHHHHHHHHhcC
Q 014746 359 TISIVGKICAEAKTT 373 (419)
Q Consensus 359 aV~~~~~I~~~aE~~ 373 (419)
||+-+++|-.+...-
T Consensus 150 ~~~~~~~i~~~i~~~ 164 (283)
T cd04727 150 AVRHMRAVNGEIRKL 164 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888863
No 278
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=49.24 E-value=3.2e+02 Score=28.28 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=89.3
Q ss_pred CCCccCHHHHHHHhhhcCCcEE-------EEecCCCHHHHHHHHHHHHhcCC--CCCceEEEEe--cCHHhHhhHHHHHh
Q 014746 203 TLTDKDKEVISTWGARNNIDFL-------SLSHTRGAEDVRHARDFLSQLGD--LGQTQIFAKI--ENTEGLTHFDEILH 271 (419)
Q Consensus 203 ~lte~D~~di~~~~l~~g~d~I-------~lsfV~saedv~~v~~~l~~~~~--~~~~~IiaKI--Et~~gv~nl~eI~~ 271 (419)
-|+++....+.......|+|+| --+|..-.|-+..+.+.+++++. ......++.| ++.+.+++.+...+
T Consensus 137 GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~ 216 (364)
T cd08210 137 GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKE 216 (364)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHH
Confidence 4566666666556677899998 34666666777777776654431 1446677777 44577888887776
Q ss_pred h-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcC-CcEEE-EccccccccCCCcchhh---HhHHHHHHHcCCceEE
Q 014746 272 E-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAG-KPAVV-TRVVDSMTDNLRPTRAE---ATDVANAVLDGSDAIL 345 (419)
Q Consensus 272 ~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~g-kpvi~-TqmLeSM~~~~~PtraE---v~Dv~nav~~G~D~vm 345 (419)
+ ++++|+.+.=. |+. .+| ..++..+ .|+.. -.|.-++..+|.- -+- ...+... .|+|.++
T Consensus 217 ~Ga~~vMv~~~~~----G~~---~~~----~l~~~~~~l~i~aHra~~ga~~~~~~~-is~~~~~~kl~Rl--aGad~~~ 282 (364)
T cd08210 217 AGAGGVLIAPGLT----GLD---TFR----ELAEDFDFLPILAHPAFAGAFVSSGDG-ISHALLFGTLFRL--AGADAVI 282 (364)
T ss_pred cCCCEEEeecccc----hHH---HHH----HHHhcCCCcEEEEccccccccccCCCc-ccHHHHHHHHHHH--hCCCEEE
Confidence 6 59999975432 222 222 2244556 66666 6677677766553 222 2333333 5999887
Q ss_pred ecccccCCCCHHHHHHHHHHHHHH
Q 014746 346 LGAETLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 346 Ls~ETa~G~yP~eaV~~~~~I~~~ 369 (419)
-. +..|+|+ ..-+...++++.
T Consensus 283 ~~--~~~g~~~-~~~e~~~~ia~~ 303 (364)
T cd08210 283 FP--NYGGRFG-FSREECQAIADA 303 (364)
T ss_pred eC--CCcCCcc-CCHHHHHHHHHH
Confidence 64 5577765 233333444443
No 279
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=49.01 E-value=2.5e+02 Score=26.94 Aligned_cols=134 Identities=10% Similarity=0.147 Sum_probs=71.7
Q ss_pred cCHHHHHHHhhhcCCcEEEEec--CCCHHHHHHHHHHHHhcCCCCCceE-------EEEe----cCH-HhHhhHHHHHhh
Q 014746 207 KDKEVISTWGARNNIDFLSLSH--TRGAEDVRHARDFLSQLGDLGQTQI-------FAKI----ENT-EGLTHFDEILHE 272 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsf--V~saedv~~v~~~l~~~~~~~~~~I-------iaKI----Et~-~gv~nl~eI~~~ 272 (419)
.+.+|++ ..++.|++.+.+.- .++++-+.++.+.+. +++.+ ..|+ ++. ..++-+..+.+.
T Consensus 85 rs~edv~-~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~-----~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~ 158 (241)
T PRK14024 85 RDDESLE-AALATGCARVNIGTAALENPEWCARVIAEHG-----DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSA 158 (241)
T ss_pred CCHHHHH-HHHHCCCCEEEECchHhCCHHHHHHHHHHhh-----hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhc
Confidence 4567886 55899999876653 466666666554442 22211 1111 111 112222222222
Q ss_pred -CcEEEE-eCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEeccc
Q 014746 273 -ADGIIL-ARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 273 -sDgImI-argDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~E 349 (419)
++.+++ +|.==+..-|+ .+..+ ++ .++..+.|+|. .. .-+..++..+.+....|+|++|+..-
T Consensus 159 G~~~iiv~~~~~~g~~~G~-d~~~i-~~---i~~~~~ipviasGG---------i~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 159 GCSRYVVTDVTKDGTLTGP-NLELL-RE---VCARTDAPVVASGG---------VSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred CCCEEEEEeecCCCCccCC-CHHHH-HH---HHhhCCCCEEEeCC---------CCCHHHHHHHhhhccCCccEEEEeHH
Confidence 366665 33222222343 33322 22 34456899998 54 44445444444333469999999988
Q ss_pred ccCCCCHHHHH
Q 014746 350 TLRGLYPVETI 360 (419)
Q Consensus 350 Ta~G~yP~eaV 360 (419)
--.|+++++-.
T Consensus 225 ~~~g~~~~~~~ 235 (241)
T PRK14024 225 LYAGAFTLPEA 235 (241)
T ss_pred HHcCCCCHHHH
Confidence 88899988754
No 280
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=48.97 E-value=2.5e+02 Score=26.86 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=73.2
Q ss_pred CHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHh-----------HhhHHHHHhhCcEE
Q 014746 208 DKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEG-----------LTHFDEILHEADGI 276 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~g-----------v~nl~eI~~~sDgI 276 (419)
+.++++ ..+..|++-|.+.- ....+ ..+++.+.+.+ .+ .+++-|....+ .+-++.+.+.++.+
T Consensus 89 ~~edv~-~~l~~Ga~~viigt-~~~~~-~~~~~~~~~~~--~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 162 (233)
T cd04723 89 SLENAQ-EWLKRGASRVIVGT-ETLPS-DDDEDRLAALG--EQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEEL 162 (233)
T ss_pred CHHHHH-HHHHcCCCeEEEcc-eeccc-hHHHHHHHhcC--CC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeE
Confidence 467776 55899999888764 33445 55666666554 32 45565655444 11223333335666
Q ss_pred EEeCCCccCCCCc--hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCC
Q 014746 277 ILARGNLGVDLPP--EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRG 353 (419)
Q Consensus 277 mIargDLg~elg~--e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G 353 (419)
++. |+..+-.. ..+..+ ++ .++....|++. .. .-+. .|+..+...|+|++++..---.|
T Consensus 163 i~~--di~~~G~~~g~~~~~~-~~---i~~~~~ipvi~~GG---------i~s~---edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 163 IVL--DIDRVGSGQGPDLELL-ER---LAARADIPVIAAGG---------VRSV---EDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred EEE--EcCccccCCCcCHHHH-HH---HHHhcCCCEEEeCC---------CCCH---HHHHHHHHcCCCEEEEehHHHcC
Confidence 662 33222111 122222 22 34456899998 54 3334 45555666799999998766677
Q ss_pred CCHHHHH
Q 014746 354 LYPVETI 360 (419)
Q Consensus 354 ~yP~eaV 360 (419)
+++.+.+
T Consensus 225 ~~~~~~~ 231 (233)
T cd04723 225 GLTLEDV 231 (233)
T ss_pred CCCHHHH
Confidence 7776644
No 281
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=48.91 E-value=2.9e+02 Score=27.62 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=58.1
Q ss_pred HhhhcCCcEEEEecCC----------------CHHHHHHHHHHHHhcCCCCCceEEEEe-----cCH-HhHhhHHHHHhh
Q 014746 215 WGARNNIDFLSLSHTR----------------GAEDVRHARDFLSQLGDLGQTQIFAKI-----ENT-EGLTHFDEILHE 272 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~----------------saedv~~v~~~l~~~~~~~~~~IiaKI-----Et~-~gv~nl~eI~~~ 272 (419)
.+.+.|+|+|=+.+-. +++-+.++.+.+.+. -...|.+|| ++. ..++-+..+.+.
T Consensus 83 ~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~---~~~pv~vKir~g~~~~~~~~~~~a~~l~~~ 159 (319)
T TIGR00737 83 INEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA---VDIPVTVKIRIGWDDAHINAVEAARIAEDA 159 (319)
T ss_pred HHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh---cCCCEEEEEEcccCCCcchHHHHHHHHHHh
Confidence 4456789998665432 233333333333322 247799998 322 122222222222
Q ss_pred -CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHH-HcCCceEEecc
Q 014746 273 -ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAV-LDGSDAILLGA 348 (419)
Q Consensus 273 -sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav-~~G~D~vmLs~ 348 (419)
+|+|.+....- .-++.. +.....+-...++.++|++. .. .-|.+ |+..++ ..|+|++|+..
T Consensus 160 G~d~i~vh~r~~--~~~~~~-~~~~~~i~~i~~~~~ipvi~nGg---------I~~~~---da~~~l~~~gad~VmigR 223 (319)
T TIGR00737 160 GAQAVTLHGRTR--AQGYSG-EANWDIIARVKQAVRIPVIGNGD---------IFSPE---DAKAMLETTGCDGVMIGR 223 (319)
T ss_pred CCCEEEEEcccc--cccCCC-chhHHHHHHHHHcCCCcEEEeCC---------CCCHH---HHHHHHHhhCCCEEEECh
Confidence 48887732111 111111 11123333334456899987 43 33444 455555 46899999973
No 282
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=48.51 E-value=1.4e+02 Score=29.03 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=54.0
Q ss_pred HHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh--CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEcc
Q 014746 238 ARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE--ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRV 315 (419)
Q Consensus 238 v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~--sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~Tqm 315 (419)
+++.|.+.. .-...|..+-++... ||+.. -|.++|. .|=+.-.+..+ ..++.+|+..|.++++
T Consensus 3 lk~~l~~g~--~~~G~~~~~~sp~~~----e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~~~a~~~~g~~~~V--- 67 (249)
T TIGR03239 3 FRQDLLARE--TLIGCWSALGNPITT----EVLGLAGFDWLLLD-----GEHAPNDVLTF-IPQLMALKGSASAPVV--- 67 (249)
T ss_pred HHHHHHcCC--ceEEEEEcCCCcHHH----HHHHhcCCCEEEEe-----cccCCCCHHHH-HHHHHHHhhcCCCcEE---
Confidence 455554422 334567766666544 45554 3999984 23233233333 4678889999999987
Q ss_pred ccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 316 VDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 316 LeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.-|.+ +-..+..+.-.|+++||+.
T Consensus 68 -----Rvp~~---~~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 68 -----RPPWN---EPVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred -----ECCCC---CHHHHHHHhcCCCCEEEec
Confidence 22233 3455677788899999995
No 283
>PLN02826 dihydroorotate dehydrogenase
Probab=48.46 E-value=3.5e+02 Score=28.49 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=51.1
Q ss_pred CceEEEEe---cCHHhHhhHHHHHhh--CcEEEEe-----C-CCcc-----CCCC-c---hhHHHHHHHHHHHHHHc--C
Q 014746 250 QTQIFAKI---ENTEGLTHFDEILHE--ADGIILA-----R-GNLG-----VDLP-P---EKVFLFQKAALYKCNMA--G 307 (419)
Q Consensus 250 ~~~IiaKI---Et~~gv~nl~eI~~~--sDgImIa-----r-gDLg-----~elg-~---e~v~~~qk~Ii~a~~~~--g 307 (419)
..+|++|| .+.+.+..+-+.+.. +|||++. | +|+- .+.| + .-.+...+.+-..+++. .
T Consensus 262 ~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ 341 (409)
T PLN02826 262 PPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGK 341 (409)
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCC
Confidence 57899999 343344444444333 5999774 3 2331 1111 2 22233444444444544 4
Q ss_pred CcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 308 KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 308 kpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.|+|- +.+. ...|++.++..||++|.+-
T Consensus 342 ipIIgvGGI~------------sg~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 342 IPLVGCGGVS------------SGEDAYKKIRAGASLVQLY 370 (409)
T ss_pred CcEEEECCCC------------CHHHHHHHHHhCCCeeeec
Confidence 67776 6643 4578999999999999996
No 284
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=48.07 E-value=2.5e+02 Score=27.01 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=63.4
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEE-EEeC-CCccCCCCchh
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGI-ILAR-GNLGVDLPPEK 291 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgI-mIar-gDLg~elg~e~ 291 (419)
.+.++|+|++.+|-.. .|+...+.+.+.+.| -...++..=.| -.+.++.|++. .|-+ ++++ |=-|...++
T Consensus 99 ~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g--~~~i~~i~P~T--~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~-- 171 (242)
T cd04724 99 DAKEAGVDGLIIPDLP-PEEAEEFREAAKEYG--LDLIFLVAPTT--PDERIKKIAELASGFIYYVSRTGVTGARTEL-- 171 (242)
T ss_pred HHHHCCCcEEEECCCC-HHHHHHHHHHHHHcC--CcEEEEeCCCC--CHHHHHHHHhhCCCCEEEEeCCCCCCCccCC--
Confidence 4578999999996543 478888888888877 33333333334 35678888884 4433 3342 222333322
Q ss_pred HHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 292 VFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 292 v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.+.....+-...+...+|+.+ .. .=+.+ ++...... +|++...
T Consensus 172 ~~~~~~~i~~lr~~~~~pI~vggG---------I~~~e---~~~~~~~~-ADgvVvG 215 (242)
T cd04724 172 PDDLKELIKRIRKYTDLPIAVGFG---------ISTPE---QAAEVAKY-ADGVIVG 215 (242)
T ss_pred ChhHHHHHHHHHhcCCCcEEEEcc---------CCCHH---HHHHHHcc-CCEEEEC
Confidence 122333333333334899988 54 22233 33444444 8888775
No 285
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=48.05 E-value=1.4e+02 Score=29.14 Aligned_cols=87 Identities=11% Similarity=0.061 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh--CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEcc
Q 014746 238 ARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE--ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRV 315 (419)
Q Consensus 238 v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~--sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~Tqm 315 (419)
+++.|.+.. .-...+.++=++..++- +.. .|.|+|.--+ +......++. ++.+|+..|..+++
T Consensus 3 lk~~l~~g~--~~~g~~~~~~~p~~~e~----~~~~g~D~v~iDlEH-----~~~~~~~~~~-~~~a~~~~g~~~~V--- 67 (249)
T TIGR02311 3 FKQALKEGQ--PQIGLWLGLADPYAAEI----CAGAGFDWLLIDGEH-----APNDVRTILS-QLQALAPYPSSPVV--- 67 (249)
T ss_pred HHHHHHCCC--ceEEEEEeCCCcHHHHH----HHhcCCCEEEEeccC-----CCCCHHHHHH-HHHHHHhcCCCcEE---
Confidence 455665422 33456777777665433 333 5999995322 2223444444 77899999988887
Q ss_pred ccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 316 VDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 316 LeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.=|.+++ .++..++-.|+|+||+.
T Consensus 68 -----Rv~~~~~---~~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 68 -----RPAIGDP---VLIKQLLDIGAQTLLVP 91 (249)
T ss_pred -----ECCCCCH---HHHHHHhCCCCCEEEec
Confidence 2123333 37888899999999995
No 286
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=47.98 E-value=2.9e+02 Score=27.43 Aligned_cols=118 Identities=13% Similarity=0.174 Sum_probs=74.9
Q ss_pred ceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-Eccc---cccccCCCc
Q 014746 251 TQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVV---DSMTDNLRP 325 (419)
Q Consensus 251 ~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmL---eSM~~~~~P 325 (419)
+++........-++.+.+-+.. .+-||+-.-+| +.++....-++++..|+.+|.++-. ...+ |.++....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 6788777755555555555544 47888865554 6667777789999999999998765 3332 112111000
Q ss_pred chhhHhHHHHHHH-cCCceEEecccccCCCC---HHHHHHHHHHHHHHHhc
Q 014746 326 TRAEATDVANAVL-DGSDAILLGAETLRGLY---PVETISIVGKICAEAKT 372 (419)
Q Consensus 326 traEv~Dv~nav~-~G~D~vmLs~ETa~G~y---P~eaV~~~~~I~~~aE~ 372 (419)
+--...++..|+. .|+|.+-.|--|.-|.| |.--.+.+++|++...-
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~i 201 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNI 201 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCC
Confidence 0112344567775 79999998866666666 55567778888776643
No 287
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=47.54 E-value=29 Score=37.21 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=43.2
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 29 MTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 29 ~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
+..+=+-+|.+.+..+.++.|+++|+++.=|..+||..+...+++++||+.
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~ 263 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRAL 263 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 444555567777888999999999999999999999999888888888863
No 288
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=47.51 E-value=2.1e+02 Score=28.42 Aligned_cols=90 Identities=12% Similarity=-0.004 Sum_probs=49.9
Q ss_pred CcEEEEe-CCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhH-hHHHHHHHcCCceEEeccc
Q 014746 273 ADGIILA-RGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEA-TDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 273 sDgImIa-rgDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv-~Dv~nav~~G~D~vmLs~E 349 (419)
.||++++ -.-=+..+..++-..+.+.++..++ ...|++. +. ..+-.|. .-.-.|-..|+|++|+..=
T Consensus 35 v~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~---------~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 35 SHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-GRIPFAPGTG---------ALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred CCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCcEEEECC---------cchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 5788873 1112223333444444444444432 3467776 43 2222333 3333455569999999754
Q ss_pred ccCCCCHHHHHHHHHHHHHHH-hc
Q 014746 350 TLRGLYPVETISIVGKICAEA-KT 372 (419)
Q Consensus 350 Ta~G~yP~eaV~~~~~I~~~a-E~ 372 (419)
--...-+-+.+++...|+..+ +-
T Consensus 105 ~y~~~~~~~l~~~f~~ia~a~~~l 128 (294)
T TIGR02313 105 YYNKPNQEALYDHFAEVADAVPDF 128 (294)
T ss_pred cCCCCCHHHHHHHHHHHHHhccCC
Confidence 444434467888888898887 44
No 289
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=47.46 E-value=37 Score=32.45 Aligned_cols=38 Identities=13% Similarity=0.326 Sum_probs=23.9
Q ss_pred HhhhcCCcEEEEecCCCHHH--------HHHHHHHHHhcCCCCCceEEE
Q 014746 215 WGARNNIDFLSLSHTRGAED--------VRHARDFLSQLGDLGQTQIFA 255 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saed--------v~~v~~~l~~~~~~~~~~Iia 255 (419)
.+...|+++|+ |||...+| ++++.++++..+ .+++|++
T Consensus 117 ~Aa~aGa~yis-pyvgRi~d~g~dg~~~v~~~~~~~~~~~--~~tkIla 162 (213)
T TIGR00875 117 LAAKAGATYVS-PFVGRLDDIGGDGMKLIEEVKTIFENHA--PDTEVIA 162 (213)
T ss_pred HHHHcCCCEEE-eecchHHHcCCCHHHHHHHHHHHHHHcC--CCCEEEE
Confidence 45778999766 89888766 445555555544 3444443
No 290
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=47.41 E-value=2.9e+02 Score=27.28 Aligned_cols=93 Identities=10% Similarity=0.027 Sum_probs=54.0
Q ss_pred HHhhhcC-CcEEEEe------cCCCHHHHHHHHHHHH-hcCCCCCceEEEEec---CHHhHhhHHHHHhh-CcEEEEeCC
Q 014746 214 TWGARNN-IDFLSLS------HTRGAEDVRHARDFLS-QLGDLGQTQIFAKIE---NTEGLTHFDEILHE-ADGIILARG 281 (419)
Q Consensus 214 ~~~l~~g-~d~I~ls------fV~saedv~~v~~~l~-~~~~~~~~~IiaKIE---t~~gv~nl~eI~~~-sDgImIarg 281 (419)
++.++.| +|+|.+. +.=|.++-.++.+... ..+ .++.|++.+- |.++++....-.+. +|++|+.+-
T Consensus 28 ~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~--~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P 105 (290)
T TIGR00683 28 RHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK--DQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 105 (290)
T ss_pred HHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC--CCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 3778899 9998776 4456666666655443 333 5678888885 45555555554443 599998664
Q ss_pred CccCCCCchhHHHHHHHHHHHHHHc-CCcEEE
Q 014746 282 NLGVDLPPEKVFLFQKAALYKCNMA-GKPAVV 312 (419)
Q Consensus 282 DLg~elg~e~v~~~qk~Ii~a~~~~-gkpvi~ 312 (419)
-.-. ..-+.+...-+.+. .+. +.|+++
T Consensus 106 ~y~~-~~~~~i~~yf~~v~---~~~~~lpv~l 133 (290)
T TIGR00683 106 FYYK-FSFPEIKHYYDTII---AETGGLNMIV 133 (290)
T ss_pred cCCC-CCHHHHHHHHHHHH---hhCCCCCEEE
Confidence 4321 11233444444443 334 567664
No 291
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=47.08 E-value=58 Score=32.43 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=46.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCc
Q 014746 31 KIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKL 86 (419)
Q Consensus 31 kIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~ 86 (419)
.+..-+ .-+.+.+.+++.+++|.+.+=|.-||-+.++..+.-..+++.++.+|-+
T Consensus 76 pv~lHl-DH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 76 PVAVHF-DHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred CEEEEC-CCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 455544 3346899999999999999999999999999999999999999888765
No 292
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=46.74 E-value=82 Score=32.41 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=52.3
Q ss_pred HhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHH-HHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHH
Q 014746 261 EGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLF-QKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAV 337 (419)
Q Consensus 261 ~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~-qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav 337 (419)
..++.+...++. +|+|.+|=-+++.--....+..- .++.+..|+++||-+.+ .+.+ |.....++ -...+..++
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~--~~~~~~~~--~~~~l~~l~ 89 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTL--LHNDELET--LERYLDRLV 89 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccc--cccchhhH--HHHHHHHHH
Confidence 345555555555 79999996677666554212111 46788999999998776 4322 11111111 235567788
Q ss_pred HcCCceEEec
Q 014746 338 LDGSDAILLG 347 (419)
Q Consensus 338 ~~G~D~vmLs 347 (419)
..|+|++.++
T Consensus 90 e~GvDaviv~ 99 (347)
T COG0826 90 ELGVDAVIVA 99 (347)
T ss_pred HcCCCEEEEc
Confidence 8899999997
No 293
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.73 E-value=94 Score=30.92 Aligned_cols=65 Identities=9% Similarity=0.131 Sum_probs=43.7
Q ss_pred CHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhH--hhHHHHHhh-CcEEEEeC
Q 014746 208 DKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGL--THFDEILHE-ADGIILAR 280 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv--~nl~eI~~~-sDgImIar 280 (419)
..+... .++++|+|+|.+-.. ++++++++.+.+.... .++. ||-.-|+ +|+.++++. +|.|.+|.
T Consensus 191 tleea~-~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~--~~~~----ieAsGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAK-NAMNAGADIVMCDNM-SVEEIKEVVAYRNANY--PHVL----LEASGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHH-HHHHcCCCEEEECCC-CHHHHHHHHHHhhccC--CCeE----EEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 345554 568999999999775 8888888888764322 3333 4433343 566777766 69998864
No 294
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=46.62 E-value=4.2e+02 Score=28.82 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=96.3
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEec-CCCHHHHHHHHHHHHhcCCCCCceEEEEecC-HHhHh-----hHHHHHhh-CcE
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSH-TRGAEDVRHARDFLSQLGDLGQTQIFAKIEN-TEGLT-----HFDEILHE-ADG 275 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsf-V~saedv~~v~~~l~~~~~~~~~~IiaKIEt-~~gv~-----nl~eI~~~-sDg 275 (419)
+|..++..|.....+.|+|.|=+-| .-++.|.+.++.+... +. .+..+.+..=. ..++. .++..+.+ .|.
T Consensus 24 ~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~-~l-~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~ 101 (524)
T PRK12344 24 FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKEL-KL-KHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPV 101 (524)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHh-CC-CCcEEEEEeeccccCCCcccHHHHHHHHhCCCCE
Confidence 4666676665566778999998866 4577777776665432 21 22334433211 11221 12333333 243
Q ss_pred --EEEeCCCccCC----CCchhHHHHHHHHHHHHHHcCCcEEE-Ec-cccccccCCCcchhhHhHHHH-HHHcCCceEEe
Q 014746 276 --IILARGNLGVD----LPPEKVFLFQKAALYKCNMAGKPAVV-TR-VVDSMTDNLRPTRAEATDVAN-AVLDGSDAILL 346 (419)
Q Consensus 276 --ImIargDLg~e----lg~e~v~~~qk~Ii~a~~~~gkpvi~-Tq-mLeSM~~~~~PtraEv~Dv~n-av~~G~D~vmL 346 (419)
+++.-.|+-.+ +..++....-+..++.++++|..+-+ +. ..+ ..+-+...+.+++. +...|+|.+.|
T Consensus 102 i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~D----a~r~d~~~l~~~~~~~~~~Gad~i~l 177 (524)
T PRK12344 102 VTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFD----GYKANPEYALATLKAAAEAGADWVVL 177 (524)
T ss_pred EEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccc----cccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 44444454322 22355666667889999999998766 32 112 22233444555554 34569999998
Q ss_pred cccccCCCCHHHHHHHHHHHHHHH
Q 014746 347 GAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 347 s~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
. +|.=..+|.+.-+++..+.+..
T Consensus 178 ~-DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 178 C-DTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred c-cCCCCcCHHHHHHHHHHHHHhc
Confidence 7 8888899999999998888776
No 295
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=46.49 E-value=94 Score=31.05 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=42.2
Q ss_pred HhhhcCCcEEEE------------------ecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCH-------HhHhhHHHH
Q 014746 215 WGARNNIDFLSL------------------SHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENT-------EGLTHFDEI 269 (419)
Q Consensus 215 ~~l~~g~d~I~l------------------sfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~-------~gv~nl~eI 269 (419)
...+.|+.+|.+ +.+...+.+..++.....+. +.++.|+|..+.. ++++....-
T Consensus 100 ~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~-~~~~~IiARTDa~~~~~~~~eAi~Ra~ay 178 (285)
T TIGR02320 100 KLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQT-TEDFMIIARVESLILGKGMEDALKRAEAY 178 (285)
T ss_pred HHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhcc-CCCeEEEEecccccccCCHHHHHHHHHHH
Confidence 447789999998 33344445555555544322 1678999997764 566666666
Q ss_pred Hhh-CcEEEEe
Q 014746 270 LHE-ADGIILA 279 (419)
Q Consensus 270 ~~~-sDgImIa 279 (419)
.++ +|++|+-
T Consensus 179 ~eAGAD~ifv~ 189 (285)
T TIGR02320 179 AEAGADGIMIH 189 (285)
T ss_pred HHcCCCEEEec
Confidence 666 7999984
No 296
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.49 E-value=90 Score=31.12 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=49.3
Q ss_pred cCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHh--HhhHHHHHhh
Q 014746 195 SQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEG--LTHFDEILHE 272 (419)
Q Consensus 195 p~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~g--v~nl~eI~~~ 272 (419)
|+..+.+. -...+.+. .+++.|+|+|.+.. -++++++++.+.+. .++++.| --| .+|+.++++.
T Consensus 188 ~~~~I~VE---v~tleea~-eA~~~gaD~I~LD~-~~~e~l~~~v~~~~-----~~i~leA----sGGIt~~ni~~~a~t 253 (277)
T PRK05742 188 PGKPVEVE---VESLDELR-QALAAGADIVMLDE-LSLDDMREAVRLTA-----GRAKLEA----SGGINESTLRVIAET 253 (277)
T ss_pred CCCeEEEE---eCCHHHHH-HHHHcCCCEEEECC-CCHHHHHHHHHHhC-----CCCcEEE----ECCCCHHHHHHHHHc
Confidence 55555443 24466665 56899999999975 58899998887652 2344433 222 4688888887
Q ss_pred -CcEEEEeC
Q 014746 273 -ADGIILAR 280 (419)
Q Consensus 273 -sDgImIar 280 (419)
+|+|-+|.
T Consensus 254 GvD~Isvg~ 262 (277)
T PRK05742 254 GVDYISIGA 262 (277)
T ss_pred CCCEEEECh
Confidence 79998864
No 297
>PLN02979 glycolate oxidase
Probab=46.27 E-value=1.4e+02 Score=31.16 Aligned_cols=94 Identities=21% Similarity=0.177 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCceEEEEe-cCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHH--
Q 014746 230 RGAEDVRHARDFLSQLGDLGQTQIFAKI-ENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNM-- 305 (419)
Q Consensus 230 ~saedv~~v~~~l~~~~~~~~~~IiaKI-Et~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~-- 305 (419)
-|-+|+..+|+. .+.+||.|- -+ .+.+....+. +|+|.|+-.- |-.++ ..+.....+.+...+
T Consensus 210 ltW~dl~wlr~~-------~~~PvivKgV~~---~~dA~~a~~~Gvd~I~VsnhG-Grqld--~~p~t~~~L~ei~~~~~ 276 (366)
T PLN02979 210 LSWKDVQWLQTI-------TKLPILVKGVLT---GEDARIAIQAGAAGIIVSNHG-ARQLD--YVPATISALEEVVKATQ 276 (366)
T ss_pred CCHHHHHHHHhc-------cCCCEEeecCCC---HHHHHHHHhcCCCEEEECCCC-cCCCC--CchhHHHHHHHHHHHhC
Confidence 366888887763 345667663 22 2222222222 5999883221 11111 112222222222222
Q ss_pred cCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecc
Q 014746 306 AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (419)
Q Consensus 306 ~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ 348 (419)
...|++. ..+ ..-.|++.|+..|+|++++..
T Consensus 277 ~~~~Vi~dGGI------------r~G~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 277 GRIPVFLDGGV------------RRGTDVFKALALGASGIFIGR 308 (366)
T ss_pred CCCeEEEeCCc------------CcHHHHHHHHHcCCCEEEEcH
Confidence 2478887 442 235899999999999999863
No 298
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=45.88 E-value=1.5e+02 Score=31.09 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCceEEEE-ecCHHhHhhHHHHHhh-CcEEEEeCCCccC--CCCc---hhHHHHHHHHHHHH
Q 014746 231 GAEDVRHARDFLSQLGDLGQTQIFAK-IENTEGLTHFDEILHE-ADGIILARGNLGV--DLPP---EKVFLFQKAALYKC 303 (419)
Q Consensus 231 saedv~~v~~~l~~~~~~~~~~IiaK-IEt~~gv~nl~eI~~~-sDgImIargDLg~--elg~---e~v~~~qk~Ii~a~ 303 (419)
+-+++..+++.. +.+||.| |-|++. ....++. +|+|++.-.- |- +-+. +-++.+++ ++
T Consensus 241 tW~~i~~lr~~~-------~~pvivKgV~~~~d---A~~a~~~G~d~I~vsnhG-Gr~~d~~~~t~~~L~ei~~----~~ 305 (383)
T cd03332 241 TWEDLAFLREWT-------DLPIVLKGILHPDD---ARRAVEAGVDGVVVSNHG-GRQVDGSIAALDALPEIVE----AV 305 (383)
T ss_pred CHHHHHHHHHhc-------CCCEEEecCCCHHH---HHHHHHCCCCEEEEcCCC-CcCCCCCcCHHHHHHHHHH----Hh
Confidence 557888777643 4678888 533322 2222223 6999984210 11 1122 23333332 22
Q ss_pred HHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 304 NMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 304 ~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
. -.+|++. ..+- .-.|++.|+..|+|++++.
T Consensus 306 ~-~~~~vi~dGGIr------------~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 306 G-DRLTVLFDSGVR------------TGADIMKALALGAKAVLIG 337 (383)
T ss_pred c-CCCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
Confidence 1 2489888 5522 4589999999999999985
No 299
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=45.65 E-value=13 Score=26.16 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=18.1
Q ss_pred CCCEEEEecc-CCCHHHHHHHHHHH
Q 014746 53 GMSVARFDFS-WGDTAYHQETLENL 76 (419)
Q Consensus 53 Gm~v~RiN~S-Hg~~e~~~~~i~~i 76 (419)
-|.|.+++|| |++.++..++++.+
T Consensus 6 ~a~v~~~~fSgHad~~~L~~~i~~~ 30 (43)
T PF07521_consen 6 RARVEQIDFSGHADREELLEFIEQL 30 (43)
T ss_dssp -SEEEESGCSSS-BHHHHHHHHHHH
T ss_pred EEEEEEEeecCCCCHHHHHHHHHhc
Confidence 3678899987 89999888888766
No 300
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=45.58 E-value=1.6e+02 Score=29.54 Aligned_cols=85 Identities=13% Similarity=0.211 Sum_probs=55.2
Q ss_pred hhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHH
Q 014746 216 GARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLF 295 (419)
Q Consensus 216 ~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~ 295 (419)
++..|+|..- =|+++ +...-++.|. .++-+..=.-...+++-++..+.--++++|||| ||-+ +.+...
T Consensus 53 a~~~GaDL~H-iFCe~-~Aa~vIKsYs------PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGRd---p~~~k~ 120 (306)
T KOG3974|consen 53 ALRVGADLSH-IFCEP-EAAVVIKSYS------PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGRD---PAILKE 120 (306)
T ss_pred HHHhccceee-eeech-hHHHHHhhcC------CceeecccccCCchHhHHHHHHhheeEEEECCC-CCCC---HHHHHH
Confidence 4778888543 24333 2333344433 344444444445588888888888899999987 3432 345555
Q ss_pred HHHHHHHHHHcCCcEEE
Q 014746 296 QKAALYKCNMAGKPAVV 312 (419)
Q Consensus 296 qk~Ii~a~~~~gkpvi~ 312 (419)
.+.|++.|+..++|+.+
T Consensus 121 i~~iley~~~~dvP~VI 137 (306)
T KOG3974|consen 121 IAKILEYLRGKDVPLVI 137 (306)
T ss_pred HHHHHHHHhcCCCcEEE
Confidence 57799999999999876
No 301
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=45.41 E-value=2.6e+02 Score=26.89 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=22.2
Q ss_pred cCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEecc
Q 014746 306 AGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (419)
Q Consensus 306 ~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ 348 (419)
.++|+|- +...-| ..|+..++..|+|+||+..
T Consensus 190 ~~ipVIg--------nGgI~s---~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 190 TELFIIG--------NNSVTT---IESAKEMFSYGADMVSVAR 221 (233)
T ss_pred CCCEEEE--------ECCcCC---HHHHHHHHHcCCCEEEEcC
Confidence 5799886 222333 3566677778999999983
No 302
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=45.40 E-value=2.4e+02 Score=28.99 Aligned_cols=94 Identities=24% Similarity=0.295 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh----CcEEEEeCCCccCCCCc-hhHHHHHHHHHHHH
Q 014746 229 TRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE----ADGIILARGNLGVDLPP-EKVFLFQKAALYKC 303 (419)
Q Consensus 229 V~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~----sDgImIargDLg~elg~-e~v~~~qk~Ii~a~ 303 (419)
..+.+++..+++.. ..+||.| ++.+.++...+ +|+|.+.- --|..+.. .....+...+....
T Consensus 199 ~~~~~~i~~l~~~~-------~~PvivK-----gv~~~~dA~~a~~~G~d~I~vsn-hgG~~~d~~~~~~~~L~~i~~~~ 265 (344)
T cd02922 199 TLTWDDIKWLRKHT-------KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLSN-HGGRQLDTAPAPIEVLLEIRKHC 265 (344)
T ss_pred CCCHHHHHHHHHhc-------CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEEC-CCcccCCCCCCHHHHHHHHHHHH
Confidence 35667777777543 4577888 33444444333 58988842 11333321 11122333444443
Q ss_pred HHc--CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 304 NMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 304 ~~~--gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
++. ..|+|. ..+- --.|++.++..|+|++++.
T Consensus 266 ~~~~~~~~vi~~GGIr------------~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 266 PEVFDKIEVYVDGGVR------------RGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred HHhCCCceEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 333 478887 4422 3579999999999999986
No 303
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=45.26 E-value=3.3e+02 Score=27.23 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=54.2
Q ss_pred HHhhhcCCcEEEEe------cCCCHHHHHHHHH-HHHhcCCCCCceEEEEec---CHHhHhhHHHHHhh-CcEEEEeCCC
Q 014746 214 TWGARNNIDFLSLS------HTRGAEDVRHARD-FLSQLGDLGQTQIFAKIE---NTEGLTHFDEILHE-ADGIILARGN 282 (419)
Q Consensus 214 ~~~l~~g~d~I~ls------fV~saedv~~v~~-~l~~~~~~~~~~IiaKIE---t~~gv~nl~eI~~~-sDgImIargD 282 (419)
++.++.|+++|++. +.-|.++=+++.+ ..+..+ .++.||+-+= |.++++.+..-.+. +|++|+-+-.
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~--grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA--GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPM 113 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC--CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 36688999999863 2234444444443 344444 5688888884 55666666555554 6999986543
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHc-CCcEEE
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNMA-GKPAVV 312 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~~-gkpvi~ 312 (419)
.-. ..-+.+...-+.| |.+. +.|+++
T Consensus 114 y~~-~~~~~l~~yf~~v---a~a~~~lPv~i 140 (309)
T cd00952 114 WLP-LDVDTAVQFYRDV---AEAVPEMAIAI 140 (309)
T ss_pred CCC-CCHHHHHHHHHHH---HHhCCCCcEEE
Confidence 211 1223444444444 4456 588876
No 304
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=45.08 E-value=2.2e+02 Score=25.26 Aligned_cols=89 Identities=17% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCC----HHHHHHHHHHHHHHHhc-C-------
Q 014746 307 GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLY----PVETISIVGKICAEAKT-T------- 373 (419)
Q Consensus 307 gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~y----P~eaV~~~~~I~~~aE~-~------- 373 (419)
..|+++ +.-.. ...+++.-+..+-.|...|+|++++..- .+.. +-+.++..+.++++++. .
T Consensus 48 ~~~v~~~v~~~~----~~~~~~~~~~~a~~a~~~Gad~i~v~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~ 121 (201)
T cd00945 48 DVPVIVVVGFPT----GLTTTEVKVAEVEEAIDLGADEIDVVIN--IGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILE 121 (201)
T ss_pred CCeEEEEecCCC----CCCcHHHHHHHHHHHHHcCCCEEEEecc--HHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 367776 43111 1133555566777888889999998522 1111 46678888888888722 1
Q ss_pred C-cC-hHHHHHHHHHHHHHCCCCCCCCEEEEEee
Q 014746 374 N-AT-SESALKVALDYGKAHGVIKSHDRVVICQK 405 (419)
Q Consensus 374 ~-~~-~~~~~~~a~~~~~~~~~~~~gd~vv~~~g 405 (419)
+ .. ..+.+....+.+.+.|+ |.|-..+|
T Consensus 122 p~~~~~~~~~~~~~~~~~~~g~----~~iK~~~~ 151 (201)
T cd00945 122 TRGLKTADEIAKAARIAAEAGA----DFIKTSTG 151 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC----CEEEeCCC
Confidence 1 11 23445555555666666 55555555
No 305
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=45.07 E-value=2.2e+02 Score=28.21 Aligned_cols=91 Identities=16% Similarity=0.240 Sum_probs=52.6
Q ss_pred HHhhhcCCcEEEEe------cCCCHHHHHHHHHH-HHhcCCCCCceEEEEecCHHhHhhHHHHHhh-----CcEEEEeCC
Q 014746 214 TWGARNNIDFLSLS------HTRGAEDVRHARDF-LSQLGDLGQTQIFAKIENTEGLTHFDEILHE-----ADGIILARG 281 (419)
Q Consensus 214 ~~~l~~g~d~I~ls------fV~saedv~~v~~~-l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-----sDgImIarg 281 (419)
.+.++.|+|+|.+. +-=|.++=+++-+. .+..+ .++.|++-+-+ +.+..-+.++. +|++|+-+-
T Consensus 33 ~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~--g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~~pP 108 (296)
T TIGR03249 33 EWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK--GKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLLLPP 108 (296)
T ss_pred HHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC--CCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEECCC
Confidence 47788999999874 34455555555443 33333 56788888742 34444444443 489988665
Q ss_pred CccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 282 NLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 282 DLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
-+.. ..-+.+...-+.| |.+.+.|+++
T Consensus 109 ~y~~-~s~~~i~~~f~~v---~~a~~~pvil 135 (296)
T TIGR03249 109 YLIN-GEQEGLYAHVEAV---CESTDLGVIV 135 (296)
T ss_pred CCCC-CCHHHHHHHHHHH---HhccCCCEEE
Confidence 4321 1223444444444 4455788886
No 306
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=45.01 E-value=1.4e+02 Score=27.80 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCCCceEEEEecCHH-hHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 236 RHARDFLSQLGDLGQTQIFAKIENTE-GLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 236 ~~v~~~l~~~~~~~~~~IiaKIEt~~-gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
..+.+.|.+.+ +.+.|.+.-|... -.++.+++....|.|+.+..+ ......+-+.|+++++|++.
T Consensus 78 ~~~~~~L~~lN--p~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~ 143 (198)
T cd01485 78 AASYEFLQELN--PNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFIS 143 (198)
T ss_pred HHHHHHHHHHC--CCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 45556677767 7777776555543 245778888888988876332 44556688999999999998
No 307
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=45.00 E-value=3.5e+02 Score=27.48 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=90.4
Q ss_pred CccCHHHHHHHhhhcC-CcEEEEe----cCC-------CHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh
Q 014746 205 TDKDKEVISTWGARNN-IDFLSLS----HTR-------GAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE 272 (419)
Q Consensus 205 te~D~~di~~~~l~~g-~d~I~ls----fV~-------saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~ 272 (419)
++.+.+|.....-+.+ +|++-+. .+. +++.+.++.+.+.+. .+.+|++||== -+.++.+|++.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~---~~~Pv~vKl~P--~~~di~~iA~~ 181 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA---TKVPVFVKLAP--NITDIDEIAKA 181 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc---ccCceEEEeCC--CHHHHHHHHHH
Confidence 4556666543334455 7886543 322 444444444444433 45899999964 55666666665
Q ss_pred -----CcEEEEe------C-CCccC-------CC-Cc---hhHHHHHHHHHHHHHHcC--CcEEE-EccccccccCCCcc
Q 014746 273 -----ADGIILA------R-GNLGV-------DL-PP---EKVFLFQKAALYKCNMAG--KPAVV-TRVVDSMTDNLRPT 326 (419)
Q Consensus 273 -----sDgImIa------r-gDLg~-------el-g~---e~v~~~qk~Ii~a~~~~g--kpvi~-TqmLeSM~~~~~Pt 326 (419)
+||+..- . .|+.. +. |+ .-.+..-+.+-..++..+ +|+|- ..+.
T Consensus 182 ~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~---------- 251 (310)
T COG0167 182 AEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIE---------- 251 (310)
T ss_pred HHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcC----------
Confidence 3888762 1 34444 11 12 234555566667777777 88876 4432
Q ss_pred hhhHhHHHHHHHcCCceEEecccccCCCC-HHHHHHHHHHHHHHHhcCC-cChHHHHH
Q 014746 327 RAEATDVANAVLDGSDAILLGAETLRGLY-PVETISIVGKICAEAKTTN-ATSESALK 382 (419)
Q Consensus 327 raEv~Dv~nav~~G~D~vmLs~ETa~G~y-P~eaV~~~~~I~~~aE~~~-~~~~~~~~ 382 (419)
-..|....++.||+++.+- ||.=.+ |--.=++.+.+.+..|..- ++.++++.
T Consensus 252 --s~~DA~E~i~aGA~~vQv~--Tal~~~Gp~i~~~I~~~l~~~l~~~g~~si~d~iG 305 (310)
T COG0167 252 --TGEDALEFILAGASAVQVG--TALIYKGPGIVKEIIKGLARWLEEKGFESIQDIIG 305 (310)
T ss_pred --cHHHHHHHHHcCCchheee--eeeeeeCchHHHHHHHHHHHHHHHcCCCCHHHHhc
Confidence 3578899999999999986 555555 4333333344444333322 44444443
No 308
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=44.76 E-value=66 Score=24.82 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred CcEEeeCCCEEEEeeCCCCCCCcCe-EeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCc
Q 014746 106 HPISLLADESVVLTPDQDKEATSNL-LPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSA 183 (419)
Q Consensus 106 ~~i~l~~G~~v~lt~~~~~~~~~~~-i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG 183 (419)
..+.++.|+.++|.+.-......+. ...+...+.. ...-.+..+ ++.-.|.+ ..+..-+.+...|.+.+..
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~--~~~~~~~~~----~~~~~L~I-~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS--SQRYQIESD----GGSSSLTI-KNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES--SSSEEEEEE----TTEEEEEE-SSESGGGSEEEEEEEEETT
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceee--eeeeeeecc----cceeEEcc-CCCChhhCEEEEEEEEECC
Confidence 4689999999999886321111122 2223222211 222334555 67778877 5555446678899998764
No 309
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=44.32 E-value=3.2e+02 Score=27.47 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=64.1
Q ss_pred CCCccCHHHHH-------HHhhhcCCcEEEEec-------------CCCH----------------HHHHHHHHHHHhcC
Q 014746 203 TLTDKDKEVIS-------TWGARNNIDFLSLSH-------------TRGA----------------EDVRHARDFLSQLG 246 (419)
Q Consensus 203 ~lte~D~~di~-------~~~l~~g~d~I~lsf-------------V~sa----------------edv~~v~~~l~~~~ 246 (419)
.+|+.|.+.+. +.+.+.|+|+|=+.. .+.. +-++++|+.+ +
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v---G 219 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW---P 219 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc---C
Confidence 47777776553 245678999996643 2222 3333333332 3
Q ss_pred CCCCceEEEEecC----------HHhHhhHHHHHhh-CcEEEEeCCCccCCC--CchhHHHHHHHHHHHHHHcCCcEEE-
Q 014746 247 DLGQTQIFAKIEN----------TEGLTHFDEILHE-ADGIILARGNLGVDL--PPEKVFLFQKAALYKCNMAGKPAVV- 312 (419)
Q Consensus 247 ~~~~~~IiaKIEt----------~~gv~nl~eI~~~-sDgImIargDLg~el--g~e~v~~~qk~Ii~a~~~~gkpvi~- 312 (419)
.+..|..||=- .++++-+..+.+. .|.|=+..|...... +..... .....-...+...+|++.
T Consensus 220 --~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~-~~~~~~~ir~~~~iPVi~~ 296 (336)
T cd02932 220 --EDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGY-QVPFAERIRQEAGIPVIAV 296 (336)
T ss_pred --CCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccc-cHHHHHHHHhhCCCCEEEe
Confidence 56678778541 1222222222222 477766655433221 111100 011112223445899987
Q ss_pred EccccccccCCCcchhhHhHHHHHHHcC-CceEEecc
Q 014746 313 TRVVDSMTDNLRPTRAEATDVANAVLDG-SDAILLGA 348 (419)
Q Consensus 313 TqmLeSM~~~~~PtraEv~Dv~nav~~G-~D~vmLs~ 348 (419)
.. .-|.+ +...++..| +|+|++..
T Consensus 297 G~---------i~t~~---~a~~~l~~g~aD~V~~gR 321 (336)
T cd02932 297 GL---------ITDPE---QAEAILESGRADLVALGR 321 (336)
T ss_pred CC---------CCCHH---HHHHHHHcCCCCeehhhH
Confidence 33 22333 345567777 99999863
No 310
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=43.98 E-value=1.5e+02 Score=28.57 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=75.2
Q ss_pred CCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEE--
Q 014746 201 LPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIIL-- 278 (419)
Q Consensus 201 lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImI-- 278 (419)
-|-|.--+...|. -+...|+.+++++-+ -+|+...+|+.+++.+ +.++...-----=++++-|.+++|+.+-
T Consensus 105 NPIl~yG~e~~iq-~ak~aGanGfiivDl-PpEEa~~~Rne~~k~g----islvpLvaPsTtdeRmell~~~adsFiYvV 178 (268)
T KOG4175|consen 105 NPILRYGVENYIQ-VAKNAGANGFIIVDL-PPEEAETLRNEARKHG----ISLVPLVAPSTTDERMELLVEAADSFIYVV 178 (268)
T ss_pred cHHHhhhHHHHHH-HHHhcCCCceEeccC-ChHHHHHHHHHHHhcC----ceEEEeeCCCChHHHHHHHHHhhcceEEEE
Confidence 4566767777785 668899999988865 4788889999998765 3333333222223566777777776543
Q ss_pred eCCCccCCCCc-hhHHHHHHHHHHHHHHc--CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 279 ARGNLGVDLPP-EKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 279 argDLg~elg~-e~v~~~qk~Ii~a~~~~--gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.| .|+ .|. +.+...-..+++..|++ .+|+-+ -. .-|+.....|+.. +|+++..
T Consensus 179 Sr--mG~-TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFG---------vst~EHf~qVgsv----aDGVvvG 235 (268)
T KOG4175|consen 179 SR--MGV-TGTRESVNEKLQSLLQRVRKATGDTPLAVGFG---------VSTPEHFKQVGSV----ADGVVVG 235 (268)
T ss_pred Ee--ccc-cccHHHHHHHHHHHHHHHHHhcCCCceeEeec---------cCCHHHHHhhhhh----ccceEec
Confidence 32 111 111 33444444455555555 467655 32 5566666666665 6667664
No 311
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=43.71 E-value=1.3e+02 Score=28.03 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 236 RHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 236 ~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
..+.+.+.+.+ ..+.+-+.-++... +|+++++...|.|+.+-.. +..+..+-..|+++++|.+.
T Consensus 78 ~~~~~~l~~~n--p~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~ 141 (202)
T TIGR02356 78 EVAAQRLRELN--SDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLIS 141 (202)
T ss_pred HHHHHHHHHhC--CCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 34445555555 45544433333322 5778888888988776432 35667788999999999987
No 312
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=43.55 E-value=56 Score=34.71 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=67.0
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhc---------C----------CCCCceEEEEecCHHhHhhHHHHHhhC------
Q 014746 219 NNIDFLSLSHTRGAEDVRHARDFLSQL---------G----------DLGQTQIFAKIENTEGLTHFDEILHEA------ 273 (419)
Q Consensus 219 ~g~d~I~lsfV~saedv~~v~~~l~~~---------~----------~~~~~~IiaKIEt~~gv~nl~eI~~~s------ 273 (419)
+++-.|++|+..|++++..+.+++... + .++.+.+|..+|+.+++-+...|....
T Consensus 123 ~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~IeviPl~e~~~~ll~a~~i~~~y~~g~~~ 202 (488)
T COG1892 123 APIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLIEVIPLFEDRESLLKAALIVGEYAEGRDP 202 (488)
T ss_pred ccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHHhhhHhHhhHHHHHHHHHHHHHHHhcCCc
Confidence 456679999999999999998876421 1 012345777888888888888887752
Q ss_pred --cEEEEeCCCccCCCCch----hHHHHHHHHHHHHHHcCCcE
Q 014746 274 --DGIILARGNLGVDLPPE----KVFLFQKAALYKCNMAGKPA 310 (419)
Q Consensus 274 --DgImIargDLg~elg~e----~v~~~qk~Ii~a~~~~gkpv 310 (419)
=-||+||.|=++.+|.- .+..+-.++-+...+.|.|+
T Consensus 203 e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i 245 (488)
T COG1892 203 EYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPI 245 (488)
T ss_pred hhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 27999999999999973 23333455666667778886
No 313
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=43.07 E-value=1.1e+02 Score=26.48 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=23.5
Q ss_pred cCCCcchhhHhHHHHHHHcCCceEEecccc
Q 014746 321 DNLRPTRAEATDVANAVLDGSDAILLGAET 350 (419)
Q Consensus 321 ~~~~PtraEv~Dv~nav~~G~D~vmLs~ET 350 (419)
.-|-..|=+...+..|+..|+|+|++.+--
T Consensus 33 rvpC~Grv~~~~il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 33 RVPCSGRVDPEFILRAFEKGADGVLVAGCH 62 (124)
T ss_pred EccCCCccCHHHHHHHHHcCCCEEEEeCCC
Confidence 445556667788999999999999996543
No 314
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=43.02 E-value=56 Score=33.10 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=37.5
Q ss_pred HHhhhcCCcEEEEecCCCH---------------HHHHHHHHHHHhcCCCCCceEEEE--ecCHHhHhhHHHHHhhCcEE
Q 014746 214 TWGARNNIDFLSLSHTRGA---------------EDVRHARDFLSQLGDLGQTQIFAK--IENTEGLTHFDEILHEADGI 276 (419)
Q Consensus 214 ~~~l~~g~d~I~lsfV~sa---------------edv~~v~~~l~~~~~~~~~~IiaK--IEt~~gv~nl~eI~~~sDgI 276 (419)
+.+.+.|+|.|.+. -|++ -+...+++.-... .++.||+- |.|.+ .+.+.+.-+||+
T Consensus 148 ~~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~---~~ipVi~NGdI~s~~---da~~~l~g~dgV 220 (318)
T TIGR00742 148 EIVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLKKDF---PHLTIEINGGIKNSE---QIKQHLSHVDGV 220 (318)
T ss_pred HHHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHHHhC---CCCcEEEECCcCCHH---HHHHHHhCCCEE
Confidence 36678999998764 5653 1333443332221 24666653 44443 334444468999
Q ss_pred EEeCCCcc
Q 014746 277 ILARGNLG 284 (419)
Q Consensus 277 mIargDLg 284 (419)
|||||=|+
T Consensus 221 MigRgal~ 228 (318)
T TIGR00742 221 MVGREAYE 228 (318)
T ss_pred EECHHHHh
Confidence 99999776
No 315
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=42.71 E-value=67 Score=31.34 Aligned_cols=88 Identities=20% Similarity=0.324 Sum_probs=48.7
Q ss_pred EEEecCHHhHhhHHHHHhh-----CcEEEEeCCCccCCCCchhHHHHHHHHHHHHH-HcCCcEEEEccccccccCCCcch
Q 014746 254 FAKIENTEGLTHFDEILHE-----ADGIILARGNLGVDLPPEKVFLFQKAALYKCN-MAGKPAVVTRVVDSMTDNLRPTR 327 (419)
Q Consensus 254 iaKIEt~~gv~nl~eI~~~-----sDgImIargDLg~elg~e~v~~~qk~Ii~a~~-~~gkpvi~TqmLeSM~~~~~Ptr 327 (419)
+.||.=.+- ++.++|++. .|+||||--| +++ ...-.+.+.+++ ..+.|+|. .|.-
T Consensus 19 ~tliDP~k~-~~~~ei~~~~~~~GTDaImIGGS~-gvt------~~~~~~~v~~ik~~~~lPvil-----------fP~~ 79 (240)
T COG1646 19 LTLIDPDKT-EEADEIAEAAAEAGTDAIMIGGSD-GVT------EENVDNVVEAIKERTDLPVIL-----------FPGS 79 (240)
T ss_pred EEEeCcccc-cccHHHHHHHHHcCCCEEEECCcc-ccc------HHHHHHHHHHHHhhcCCCEEE-----------ecCC
Confidence 445533332 566666654 4999998332 222 123355677777 89999997 2222
Q ss_pred hhHhHHHHHHHcCCceEEe----ccc---ccCCCCHHHHHHHHHHHH
Q 014746 328 AEATDVANAVLDGSDAILL----GAE---TLRGLYPVETISIVGKIC 367 (419)
Q Consensus 328 aEv~Dv~nav~~G~D~vmL----s~E---Ta~G~yP~eaV~~~~~I~ 367 (419)
.+.+..++|+++. ++. =-.|. .+++.+...++.
T Consensus 80 ------~~~is~~aDavff~svLNS~n~~~i~ga-q~~~a~~~~~~~ 119 (240)
T COG1646 80 ------PSGISPYADAVFFPSVLNSDNPYWIVGA-QVEGAKLVGKLG 119 (240)
T ss_pred ------hhccCccCCeEEEEEEecCCCcccccch-hhhhhHHHHhhh
Confidence 1234457888764 211 11332 456666666665
No 316
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=42.69 E-value=2.8e+02 Score=25.75 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=59.3
Q ss_pred HhhhcCCcEEEEecC----------------CCHHHHHHHHHHHHhcCCCCCceEEEEecC----H-HhHhhHHHHHhh-
Q 014746 215 WGARNNIDFLSLSHT----------------RGAEDVRHARDFLSQLGDLGQTQIFAKIEN----T-EGLTHFDEILHE- 272 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV----------------~saedv~~v~~~l~~~~~~~~~~IiaKIEt----~-~gv~nl~eI~~~- 272 (419)
.+.+.|+|+|-+..- ++++-+.++.+.+.+.- ...+..|+-. . +.++-+..+.+.
T Consensus 75 ~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~---~~~v~vk~r~~~~~~~~~~~~~~~l~~~G 151 (231)
T cd02801 75 IVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV---PIPVTVKIRLGWDDEEETLELAKALEDAG 151 (231)
T ss_pred HHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc---CCCEEEEEeeccCCchHHHHHHHHHHHhC
Confidence 445679999977543 35555555555554432 2567777631 1 233333333333
Q ss_pred CcEEEEeCCCccC-CCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHc-CCceEEecc
Q 014746 273 ADGIILARGNLGV-DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLD-GSDAILLGA 348 (419)
Q Consensus 273 sDgImIargDLg~-elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~-G~D~vmLs~ 348 (419)
.|.|.+..+.-.. ..+...+.. +-..++..++|++. .. .-+ ..|+..++.. |+|++|+..
T Consensus 152 vd~i~v~~~~~~~~~~~~~~~~~----~~~i~~~~~ipvi~~Gg---------i~~---~~d~~~~l~~~gad~V~igr 214 (231)
T cd02801 152 ASALTVHGRTREQRYSGPADWDY----IAEIKEAVSIPVIANGD---------IFS---LEDALRCLEQTGVDGVMIGR 214 (231)
T ss_pred CCEEEECCCCHHHcCCCCCCHHH----HHHHHhCCCCeEEEeCC---------CCC---HHHHHHHHHhcCCCEEEEcH
Confidence 4777664331100 011112222 22223345789887 33 223 3455666665 899999983
No 317
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=42.52 E-value=2e+02 Score=28.22 Aligned_cols=38 Identities=13% Similarity=-0.008 Sum_probs=24.0
Q ss_pred HHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHhc
Q 014746 335 NAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 335 nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~ 372 (419)
.|-..|+|++|+..=.-....+-+.+++...|++.++.
T Consensus 91 ~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~ 128 (292)
T PRK03170 91 FAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDL 128 (292)
T ss_pred HHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 34445888888864443344456777777777776643
No 318
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=42.06 E-value=3.5e+02 Score=29.87 Aligned_cols=150 Identities=19% Similarity=0.115 Sum_probs=90.5
Q ss_pred CCCccCHHHHHHHhhhcCCcEEEE----------ecCCCHHHHHHHHHHHHhcCCCCCceEEEE--ecCHHhHhh-----
Q 014746 203 TLTDKDKEVISTWGARNNIDFLSL----------SHTRGAEDVRHARDFLSQLGDLGQTQIFAK--IENTEGLTH----- 265 (419)
Q Consensus 203 ~lte~D~~di~~~~l~~g~d~I~l----------sfV~saedv~~v~~~l~~~~~~~~~~IiaK--IEt~~gv~n----- 265 (419)
.++..|+..+.....+.|++.|=+ ||+. .++-+.++.+ .+.. .++.+.+. --+.-|..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~-e~~~e~l~~l-~~~~--~~~~l~~L~Rg~N~~G~~~ypddv 92 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLN-EDPWERLREL-KKAL--PNTPLQMLLRGQNLLGYRHYADDV 92 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCC-CCHHHHHHHH-HHhC--CCCEEEEEEccccccccccCchhh
Confidence 456667766655556678887755 6664 3344444443 3333 34444444 233334432
Q ss_pred ---H-HHHHhh-CcE--EEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHH-HH
Q 014746 266 ---F-DEILHE-ADG--IILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVAN-AV 337 (419)
Q Consensus 266 ---l-~eI~~~-sDg--ImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~n-av 337 (419)
. +.-++. .|. ++.+-.|. .-.+..++.++++|+-+-.+ + ++..+|.-|-+.+.+++. +.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~----------~n~~~~i~~ak~~G~~v~~~--i-~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP----------RNLQAAIQAAKKHGAHAQGT--I-SYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH----------HHHHHHHHHHHHcCCEEEEE--E-EeccCCCCCHHHHHHHHHHHH
Confidence 1 111222 354 34444442 23455668899999866542 1 344466667777777774 45
Q ss_pred HcCCceEEecccccCCCCHHHHHHHHHHHHHHH
Q 014746 338 LDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 338 ~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
..|+|.+.|. +|+=.-.|.++-+.++.+.++.
T Consensus 160 ~~Gad~I~i~-Dt~G~~~P~~v~~lv~~lk~~~ 191 (582)
T TIGR01108 160 EMGVDSICIK-DMAGILTPKAAYELVSALKKRF 191 (582)
T ss_pred HcCCCEEEEC-CCCCCcCHHHHHHHHHHHHHhC
Confidence 5699999997 9999999999998888886654
No 319
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=41.86 E-value=3.9e+02 Score=27.17 Aligned_cols=148 Identities=12% Similarity=0.094 Sum_probs=85.7
Q ss_pred CCccCHHHHHHHhhhcCCcEEEE---------ecCC---CHHHHHHHHHHHHhcCCCCCceEEEEe----cCHHhHhhHH
Q 014746 204 LTDKDKEVISTWGARNNIDFLSL---------SHTR---GAEDVRHARDFLSQLGDLGQTQIFAKI----ENTEGLTHFD 267 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~l---------sfV~---saedv~~v~~~l~~~~~~~~~~IiaKI----Et~~gv~nl~ 267 (419)
+|..++..+.....+.|+|.|=+ ||.. ...+...+++..... .+.++.+.+ =+.+.+ +
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~---~~~~~~~ll~pg~~~~~dl---~ 94 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVV---KRAKVAVLLLPGIGTVHDL---K 94 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhC---CCCEEEEEeccCccCHHHH---H
Confidence 46677777765656689999977 3321 112334444433322 233444333 233333 2
Q ss_pred HHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHH-HHcCCceEE
Q 014746 268 EILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANA-VLDGSDAIL 345 (419)
Q Consensus 268 eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~na-v~~G~D~vm 345 (419)
.-.+. .|.|-|+- ...+.. .-++.++.+++.|..+...-|. | ..-+.+++.+.+.. ...|+|++-
T Consensus 95 ~a~~~gvd~iri~~-------~~~e~d-~~~~~i~~ak~~G~~v~~~l~~-s----~~~~~e~l~~~a~~~~~~Ga~~i~ 161 (333)
T TIGR03217 95 AAYDAGARTVRVAT-------HCTEAD-VSEQHIGMARELGMDTVGFLMM-S----HMTPPEKLAEQAKLMESYGADCVY 161 (333)
T ss_pred HHHHCCCCEEEEEe-------ccchHH-HHHHHHHHHHHcCCeEEEEEEc-c----cCCCHHHHHHHHHHHHhcCCCEEE
Confidence 22222 46666542 222333 3467889999999887652221 1 23345677777655 445999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHHHHh
Q 014746 346 LGAETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 346 Ls~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
+. +|+=.-+|.+.-+....+.+...
T Consensus 162 i~-DT~G~~~P~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 162 IV-DSAGAMLPDDVRDRVRALKAVLK 186 (333)
T ss_pred Ec-cCCCCCCHHHHHHHHHHHHHhCC
Confidence 87 88888899888887777766543
No 320
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=41.78 E-value=77 Score=33.03 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=59.3
Q ss_pred CHHHHHHHhhhcC-CcEEEEecCC-----------------CHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHH
Q 014746 208 DKEVISTWGARNN-IDFLSLSHTR-----------------GAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEI 269 (419)
Q Consensus 208 D~~di~~~~l~~g-~d~I~lsfV~-----------------saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI 269 (419)
+.+++. .+++.+ +|+|.++--. +..-+.++++++.+.+...++.||+ .-|+.+-.++
T Consensus 226 ~~~~~a-~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv 300 (392)
T cd02808 226 GEGDIA-AGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADV 300 (392)
T ss_pred CHHHHH-HHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHH
Confidence 455665 445555 9999998774 2233445555565443224577776 5566666666
Q ss_pred Hhh----CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-Ec
Q 014746 270 LHE----ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TR 314 (419)
Q Consensus 270 ~~~----sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-Tq 314 (419)
+++ +|++.+||.=|.. .-......|+.-.+|+++ ||
T Consensus 301 ~kalaLGAd~V~ig~~~l~a---------l~c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 301 AKALALGADAVGIGTAALIA---------LGCIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHHHcCCCeeeechHHHHh---------cchHHHHhcCCCCCCcccccC
Confidence 664 7999998754422 112345789999999999 98
No 321
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.63 E-value=2.9e+02 Score=25.55 Aligned_cols=123 Identities=10% Similarity=0.108 Sum_probs=65.7
Q ss_pred ccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCcc
Q 014746 206 DKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLG 284 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg 284 (419)
..+...+.+.+++.|+.+|-+.+ +++...+.+.. +.+.. ....+ .-=|.--.++++.-+++ +|+++.+--|
T Consensus 23 ~~~~~~~~~~~~~~Gv~~vqlr~-k~~~~~e~~~~-~~~~~--~~~~~--g~gtvl~~d~~~~A~~~gAdgv~~p~~~-- 94 (187)
T PRK07455 23 LELGLQMAEAVAAGGMRLIEITW-NSDQPAELISQ-LREKL--PECII--GTGTILTLEDLEEAIAAGAQFCFTPHVD-- 94 (187)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC-CCCCHHHHHHH-HHHhC--CCcEE--eEEEEEcHHHHHHHHHcCCCEEECCCCC--
Confidence 33444443466788999888875 44433332222 22211 11100 00111122444444444 5788764222
Q ss_pred CCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHH---H
Q 014746 285 VDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVET---I 360 (419)
Q Consensus 285 ~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~ea---V 360 (419)
..++..|+.++.+.+. +. -.+++..|...|+|.+=+ ||..+ .
T Consensus 95 ------------~~~~~~~~~~~~~~i~G~~--------------t~~e~~~A~~~Gadyv~~--------Fpt~~~~G~ 140 (187)
T PRK07455 95 ------------PELIEAAVAQDIPIIPGAL--------------TPTEIVTAWQAGASCVKV--------FPVQAVGGA 140 (187)
T ss_pred ------------HHHHHHHHHcCCCEEcCcC--------------CHHHHHHHHHCCCCEEEE--------CcCCcccCH
Confidence 4466688899998776 43 234567778889999877 55432 4
Q ss_pred HHHHHHHHHH
Q 014746 361 SIVGKICAEA 370 (419)
Q Consensus 361 ~~~~~I~~~a 370 (419)
.+++.+....
T Consensus 141 ~~l~~~~~~~ 150 (187)
T PRK07455 141 DYIKSLQGPL 150 (187)
T ss_pred HHHHHHHhhC
Confidence 5566555543
No 322
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=41.44 E-value=3.2e+02 Score=26.08 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCC-------Cc
Q 014746 211 VISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARG-------NL 283 (419)
Q Consensus 211 di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIarg-------DL 283 (419)
++. .|++.++|+|-++ ++-..+..+++.+. .+..|=.-+-+.+-+....+.- +|.|.+|+= |.
T Consensus 73 ~~d-lA~~~~AdGVHlG--q~D~~~~~ar~~~~-----~~~iIG~S~h~~eea~~A~~~g--~DYv~~GpifpT~tK~~~ 142 (211)
T COG0352 73 RVD-LALAVGADGVHLG--QDDMPLAEARELLG-----PGLIIGLSTHDLEEALEAEELG--ADYVGLGPIFPTSTKPDA 142 (211)
T ss_pred cHH-HHHhCCCCEEEcC--CcccchHHHHHhcC-----CCCEEEeecCCHHHHHHHHhcC--CCEEEECCcCCCCCCCCC
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHH
Q 014746 284 GVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISI 362 (419)
Q Consensus 284 g~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~ 362 (419)
.-.|++.+.++.+..- +|++. .. --...+......|+|+|-+........-|..+++-
T Consensus 143 -~~~G~~~l~~~~~~~~-------iP~vAIGG-------------i~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~ 201 (211)
T COG0352 143 -PPLGLEGLREIRELVN-------IPVVAIGG-------------INLENVPEVLEAGADGVAVVSAITSAADPAAAAKA 201 (211)
T ss_pred -CccCHHHHHHHHHhCC-------CCEEEEcC-------------CCHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHH
Q ss_pred HHHHHHH
Q 014746 363 VGKICAE 369 (419)
Q Consensus 363 ~~~I~~~ 369 (419)
+.+..+.
T Consensus 202 ~~~~~~~ 208 (211)
T COG0352 202 LRNALED 208 (211)
T ss_pred HHHHHHh
No 323
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=41.43 E-value=1.9e+02 Score=28.05 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=77.7
Q ss_pred CCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEec-----CHHhHhhHHHHHhh---
Q 014746 201 LPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIE-----NTEGLTHFDEILHE--- 272 (419)
Q Consensus 201 lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIE-----t~~gv~nl~eI~~~--- 272 (419)
-|..|+.|...|-.-|.+.++..|+++ |.-+...+++|.... ...|-.=|= ++.++.-.+.....
T Consensus 18 k~~~T~~~I~~l~~eA~~~~f~avCV~----P~~V~~A~~~l~g~~---~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~G 90 (228)
T COG0274 18 KPDATEEDIARLCAEAKEYGFAAVCVN----PSYVPLAKEALKGST---VVRVCTVIGFPLGANTTAVKAAEAREAIENG 90 (228)
T ss_pred CCCCCHHHHHHHHHHHHhhCceEEEEC----cchHHHHHHHhccCC---CeEEEEecCCCCCCChHHHHHHHHHHHHHcC
Confidence 356788887776556778888877765 555666777775311 112222221 11121112211111
Q ss_pred CcEE--EEeCCCccCCCCchhHHHHHHHHHHHHHHc-CCcEEE-EccccccccCCCcchhhHhHHH-HHHHcCCceEEec
Q 014746 273 ADGI--ILARGNLGVDLPPEKVFLFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVA-NAVLDGSDAILLG 347 (419)
Q Consensus 273 sDgI--mIargDLg~elg~e~v~~~qk~Ii~a~~~~-gkpvi~-TqmLeSM~~~~~PtraEv~Dv~-nav~~G~D~vmLs 347 (419)
+|-| +|-.|-| .+=.++.+..-.+.+..+|..+ -.-||+ |-.| |..|..... -++..|+|.+=-|
T Consensus 91 AdEiDmVinig~~-k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~L---------t~ee~~~A~~i~~~aGAdFVKTS 160 (228)
T COG0274 91 ADEIDMVINIGAL-KSGNWEAVEREIRAVVEACADAVVLKVILETGLL---------TDEEKRKACEIAIEAGADFVKTS 160 (228)
T ss_pred CCeeeeeeeHHHH-hcCCHHHHHHHHHHHHHHhCCCceEEEEEecccc---------CHHHHHHHHHHHHHhCCCEEEcC
Confidence 2221 1111111 0111234444445566666653 334677 6655 455553333 3456799998766
Q ss_pred ccccCCCCHHHHHHHHHHHH
Q 014746 348 AETLRGLYPVETISIVGKIC 367 (419)
Q Consensus 348 ~ETa~G~yP~eaV~~~~~I~ 367 (419)
.--+.|.--+|.|+.|++++
T Consensus 161 TGf~~~gAT~edv~lM~~~v 180 (228)
T COG0274 161 TGFSAGGATVEDVKLMKETV 180 (228)
T ss_pred CCCCCCCCCHHHHHHHHHHh
Confidence 43344555689999999988
No 324
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=41.26 E-value=2.1e+02 Score=27.29 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=38.9
Q ss_pred HHHHHHHHHcC-CCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCc
Q 014746 43 VEIISGCLNAG-MSVARFDFSWGDTAYHQETLENLKIAIKSTKKL 86 (419)
Q Consensus 43 ~~~i~~li~~G-m~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~ 86 (419)
.+.+++.+++| ++.+-|-.-+-+.++..+....++..++.+|.+
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~ 73 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAA 73 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCE
Confidence 46889999999 799999999999999999999999998887743
No 325
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=41.11 E-value=1.2e+02 Score=24.10 Aligned_cols=54 Identities=31% Similarity=0.299 Sum_probs=41.9
Q ss_pred CCCCCHHHHHH-HHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecC-CC
Q 014746 38 PRSRSVEIISG-CLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTI-GP 96 (419)
Q Consensus 38 p~~~~~~~i~~-li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~-GP 96 (419)
..+.+-|.+.+ +-..|+.++|=+=++|......++++.++ -|..++|-.|-+ ||
T Consensus 17 S~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk-----~G~~~~itpDGPrGP 72 (74)
T PF04028_consen 17 SRSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALK-----EGYSIAITPDGPRGP 72 (74)
T ss_pred ccCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHH-----CCCeEEEeCCCCCCC
Confidence 45677788866 55689999999999999988888887666 366788888864 44
No 326
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=40.90 E-value=98 Score=27.69 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=68.6
Q ss_pred HhhhcCCcEEEEecCCCH------HHHHHHHHHHHhcCCCCCceEEE---Eec--------------CHHhHhhHHHHHh
Q 014746 215 WGARNNIDFLSLSHTRGA------EDVRHARDFLSQLGDLGQTQIFA---KIE--------------NTEGLTHFDEILH 271 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~sa------edv~~v~~~l~~~~~~~~~~Iia---KIE--------------t~~gv~nl~eI~~ 271 (419)
++.++|+++|-+++.... .++.++++.+.+.| +.|.+ ... ...+++.+.+.++
T Consensus 3 ~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~g----l~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 78 (213)
T PF01261_consen 3 AAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYG----LKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAID 78 (213)
T ss_dssp HHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTT----CEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcC----CeEEEEecccccccccccccCcchhhHHHHHHHHHHHH
Confidence 557889999988876553 34788889998876 22221 111 1234666666666
Q ss_pred h-----CcEEEEeCC--CccCCCCc----hhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcch---hhHhHHHHHH
Q 014746 272 E-----ADGIILARG--NLGVDLPP----EKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTR---AEATDVANAV 337 (419)
Q Consensus 272 ~-----sDgImIarg--DLg~elg~----e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~Ptr---aEv~Dv~nav 337 (419)
. +..+.+..| +....... +.+...-+++...|.++|.-+.+ |.+-.....+. .++.++...+
T Consensus 79 ~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l----E~~~~~~~~~~~~~~~~~~~l~~~ 154 (213)
T PF01261_consen 79 LAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL----ENHPGPFSETPFSVEEIYRLLEEV 154 (213)
T ss_dssp HHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE----E-SSSSSSSEESSHHHHHHHHHHH
T ss_pred HHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE----ecccCccccchhhHHHHHHHHhhc
Confidence 5 377888877 33333333 34445557788888888977665 33334433344 5566666555
No 327
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=40.86 E-value=71 Score=31.31 Aligned_cols=50 Identities=30% Similarity=0.342 Sum_probs=37.8
Q ss_pred HcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHH
Q 014746 305 MAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKI 366 (419)
Q Consensus 305 ~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I 366 (419)
.+..|+|+ .. =..|+ |.+.+...|+|+|+++.-.|.-+.|+.--+-|..-
T Consensus 180 ~a~VPviVDAG-------iG~pS-----dAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~A 230 (262)
T COG2022 180 EADVPVIVDAG-------IGTPS-----DAAQAMELGADAVLLNTAIARAKDPVAMARAFALA 230 (262)
T ss_pred hCCCCEEEeCC-------CCChh-----HHHHHHhcccceeehhhHhhccCChHHHHHHHHHH
Confidence 34999998 55 23454 45999999999999998888888887766666543
No 328
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=40.85 E-value=42 Score=36.06 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=39.0
Q ss_pred EEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHH
Q 014746 33 VGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIA 79 (419)
Q Consensus 33 i~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a 79 (419)
=+-+|.+.+..+.++.|+++|+++.=+..+||......++++.||+.
T Consensus 219 ~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~ 265 (479)
T PRK07807 219 AAAVGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRAL 265 (479)
T ss_pred HhhhccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHH
Confidence 33456666778999999999999999999999988888888888763
No 329
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=40.74 E-value=4.1e+02 Score=28.39 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred cCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeC------
Q 014746 207 KDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILAR------ 280 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIar------ 280 (419)
.|..++. ++.|+|+|-++ +.--....+|+.+. .+..|=+-.-+.+-+....+ .-+|.|.+|+
T Consensus 267 ND~~dlA---l~~gAdGVHLG--QeDL~~~~aR~ilg-----~~~iIGvStHs~eEl~~A~~--~gaDYI~lGPIFpT~T 334 (437)
T PRK12290 267 NDYWQLA---IKHQAYGVHLG--QEDLEEANLAQLTD-----AGIRLGLSTHGYYELLRIVQ--IQPSYIALGHIFPTTT 334 (437)
T ss_pred ECHHHHH---HHcCCCEEEcC--hHHcchhhhhhhcC-----CCCEEEEecCCHHHHHHHhh--cCCCEEEECCccCCCC
Q ss_pred -CCccCCCCchhHHHHHHHH--HHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCH
Q 014746 281 -GNLGVDLPPEKVFLFQKAA--LYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYP 356 (419)
Q Consensus 281 -gDLg~elg~e~v~~~qk~I--i~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP 356 (419)
-+-..-+|++.+..+++.+ +..++..++|++- .. =...++......|++++-..+.-..-..|
T Consensus 335 K~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGG-------------I~~~Ni~~vl~aGa~GVAVVSAI~~A~DP 401 (437)
T PRK12290 335 KQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGG-------------IDQSNAEQVWQCGVSSLAVVRAITLAEDP 401 (437)
T ss_pred CCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECC-------------cCHHHHHHHHHcCCCEEEEehHhhcCCCH
Q ss_pred HHHHHHHHHHHHH
Q 014746 357 VETISIVGKICAE 369 (419)
Q Consensus 357 ~eaV~~~~~I~~~ 369 (419)
.++++.+.+++..
T Consensus 402 ~aa~~~l~~~~~~ 414 (437)
T PRK12290 402 QLVIEFFDQVMAE 414 (437)
T ss_pred HHHHHHHHHHHhh
No 330
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=40.69 E-value=1.6e+02 Score=28.39 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 236 RHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 236 ~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
..+++.+.+.+ .++.|-+--+.... +|+++++...|.|+-+-.+ +..+..+-..|+++++|.+.
T Consensus 81 ~~a~~~l~~in--p~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D~----------~~~r~~ln~~~~~~~ip~v~ 144 (240)
T TIGR02355 81 ESAKDALTQIN--PHIAINPINAKLDD-AELAALIAEHDIVVDCTDN----------VEVRNQLNRQCFAAKVPLVS 144 (240)
T ss_pred HHHHHHHHHHC--CCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 34445566666 56655554333322 5788888888877765433 34567788999999999987
No 331
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=40.43 E-value=3.1e+02 Score=27.07 Aligned_cols=94 Identities=17% Similarity=0.303 Sum_probs=58.1
Q ss_pred HHHHHHHhhhcCCcEEEE-ecC-----------CCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhH----hhHHHHHhh
Q 014746 209 KEVISTWGARNNIDFLSL-SHT-----------RGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGL----THFDEILHE 272 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~l-sfV-----------~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv----~nl~eI~~~ 272 (419)
.+.|. .|...|+|||-+ .|+ -.+.++.+.|+.|. .+++|++-|--..+. ..+++++..
T Consensus 92 ~aal~-iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~-----~~v~i~adV~~kh~~~l~~~~~~e~a~~ 165 (257)
T TIGR00259 92 VAALA-IAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG-----SEVKILADIVVKHAVHLGNRDLESIALD 165 (257)
T ss_pred HHHHH-HHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcC-----CCcEEEeceeecccCcCCCCCHHHHHHH
Confidence 45664 778899999998 555 34556666666553 568888877444333 467777662
Q ss_pred ------CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-Ec
Q 014746 273 ------ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TR 314 (419)
Q Consensus 273 ------sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-Tq 314 (419)
+||+++.---=|.+..++.+..+.+ ..-..|+++ +.
T Consensus 166 ~~~~~~aDavivtG~~TG~~~d~~~l~~vr~------~~~~~PvllggG 208 (257)
T TIGR00259 166 TVERGLADAVILSGKTTGTEVDLELLKLAKE------TVKDTPVLAGSG 208 (257)
T ss_pred HHHhcCCCEEEECcCCCCCCCCHHHHHHHHh------ccCCCeEEEECC
Confidence 6999996444444444444432221 122579998 65
No 332
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=40.34 E-value=64 Score=32.77 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=39.9
Q ss_pred HHhhhcCCcEEEEecCCCHHH-------HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh--CcEEEEeCCCcc
Q 014746 214 TWGARNNIDFLSLSHTRGAED-------VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE--ADGIILARGNLG 284 (419)
Q Consensus 214 ~~~l~~g~d~I~lsfV~saed-------v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~--sDgImIargDLg 284 (419)
+.+.+.|++.+.+ +.|++.+ -..++++-+.. .++.||+.= .....+...+.++. +||+|||||=|+
T Consensus 159 ~~~~~~g~~~ltV-HgRtr~~~y~~~ad~~~I~~vk~~~---~~ipvi~NG-dI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 159 RILEDAGADALTV-HGRTRAQGYLGPADWDYIKELKEAV---PSIPVIANG-DIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHhcCCCEEEE-ecccHHhcCCCccCHHHHHHHHHhC---CCCeEEeCC-CcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 3557889998886 3566544 33333322221 225555521 11245566677776 699999999765
Q ss_pred CC
Q 014746 285 VD 286 (419)
Q Consensus 285 ~e 286 (419)
.-
T Consensus 234 nP 235 (323)
T COG0042 234 NP 235 (323)
T ss_pred CC
Confidence 43
No 333
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=40.30 E-value=3.5e+02 Score=26.16 Aligned_cols=148 Identities=11% Similarity=0.082 Sum_probs=83.1
Q ss_pred CccCHHHHHHHhhhcCCcEEEEecC------------CCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhH---hhHHHH
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSHT------------RGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGL---THFDEI 269 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsfV------------~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv---~nl~eI 269 (419)
+..++..+.+...+.|+|.|=+.|. ....+.+.++.+... . .+.++.+..- .+. +.++..
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~--~~~~~~~~~~--~~~~~~~~i~~a 94 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-L--KQAKLGVLLL--PGIGTVDDLKMA 94 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-c--cCCEEEEEec--CCccCHHHHHHH
Confidence 5566666655667889999877521 111122233332222 2 3345555431 122 223333
Q ss_pred Hhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHH-HHcCCceEEec
Q 014746 270 LHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANA-VLDGSDAILLG 347 (419)
Q Consensus 270 ~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~na-v~~G~D~vmLs 347 (419)
.+. .|.+-+. .+..++. ..+..++.+++.|..+.++ +. +. ..-+.+++.+.+.. ...|+|.+.|.
T Consensus 95 ~~~g~~~iri~-------~~~s~~~-~~~~~i~~ak~~G~~v~~~-~~--~~--~~~~~~~~~~~~~~~~~~G~d~i~l~ 161 (263)
T cd07943 95 ADLGVDVVRVA-------THCTEAD-VSEQHIGAARKLGMDVVGF-LM--MS--HMASPEELAEQAKLMESYGADCVYVT 161 (263)
T ss_pred HHcCCCEEEEE-------echhhHH-HHHHHHHHHHHCCCeEEEE-EE--ec--cCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 332 3655441 2222333 3366889999999987661 11 11 22345777776655 44599999985
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHh
Q 014746 348 AETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 348 ~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
+|.=.-+|.+.-+.++.+-+...
T Consensus 162 -DT~G~~~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 162 -DSAGAMLPDDVRERVRALREALD 184 (263)
T ss_pred -CCCCCcCHHHHHHHHHHHHHhCC
Confidence 88888999888887777766543
No 334
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=40.29 E-value=3.9e+02 Score=26.71 Aligned_cols=116 Identities=11% Similarity=0.138 Sum_probs=75.2
Q ss_pred ceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE--Eccc---cccccCCC
Q 014746 251 TQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV--TRVV---DSMTDNLR 324 (419)
Q Consensus 251 ~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~--TqmL---eSM~~~~~ 324 (419)
++|...+....-++.+..-++. .+-||+. |-.+++++=-..-+++++.|+++|.+|=. .++= +......
T Consensus 78 VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~- 152 (285)
T PRK07709 78 VPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG- 152 (285)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCccccc-
Confidence 5677777666655555544444 3688886 34567777777779999999999999843 2221 1111110
Q ss_pred cchhhHhHHHHHHH-cCCceEEecccccCCCC---HHHHHHHHHHHHHHHh
Q 014746 325 PTRAEATDVANAVL-DGSDAILLGAETLRGLY---PVETISIVGKICAEAK 371 (419)
Q Consensus 325 PtraEv~Dv~nav~-~G~D~vmLs~ETa~G~y---P~eaV~~~~~I~~~aE 371 (419)
-.-....+...|+. -|+|++-.|--|+=|.| |.--.+.+.+|.++..
T Consensus 153 ~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~ 203 (285)
T PRK07709 153 VIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG 203 (285)
T ss_pred ccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC
Confidence 00112234455664 59999999999999999 6667777888866553
No 335
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=40.19 E-value=1e+02 Score=29.82 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=40.0
Q ss_pred CeEEEEecCCCC-CCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEec
Q 014746 29 MTKIVGTLGPRS-RSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDT 93 (419)
Q Consensus 29 ~tkIi~TiGp~~-~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl 93 (419)
+..+-+|+|..+ ...+..+++.+.|.+.+.+-+...+.+.-.+.++.+|+ ..+..+.+++|-
T Consensus 72 ~v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~vr~---~~g~~~~l~vDa 134 (263)
T cd03320 72 RIPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVGATSFEEDLARLRALRE---ALPADAKLRLDA 134 (263)
T ss_pred CcceeEEecCCCHHHHHHHHHHHhCCCCEEEEEECCCChHHHHHHHHHHHH---HcCCCCeEEEeC
Confidence 445556776443 23356777889999999999876666655556666654 345445666664
No 336
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=40.08 E-value=50 Score=32.49 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=30.7
Q ss_pred HhhHHH-HHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 263 LTHFDE-ILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 263 v~nl~e-I~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+..+++ |.+-.|+|++.+.| +..-...+++++++|+||+.
T Consensus 81 ~~~i~~~ia~~~daIiv~~~d----------~~~~~~~v~~a~~aGIpVv~ 121 (322)
T COG1879 81 IAQIEDLIAQGVDAIIINPVD----------PDALTPAVKKAKAAGIPVVT 121 (322)
T ss_pred HHHHHHHHHcCCCEEEEcCCC----------hhhhHHHHHHHHHCCCcEEE
Confidence 334433 34557999999998 56667788999999999998
No 337
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=40.04 E-value=1.4e+02 Score=28.02 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=51.3
Q ss_pred CCeEEEEecC-----CCCCC-HHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCce-EEEEecCCCeEEE
Q 014746 28 AMTKIVGTLG-----PRSRS-VEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLC-AVMLDTIGPELLV 100 (419)
Q Consensus 28 ~~tkIi~TiG-----p~~~~-~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i-~Il~Dl~GPkIR~ 100 (419)
.++|||++-= |+.++ .+.+++|.+.|.++++|-..-.+.++..++++..++..+..+.|+ ++.|--.|.--|+
T Consensus 112 ~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi 191 (224)
T PF01487_consen 112 GGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRI 191 (224)
T ss_dssp TTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHH
T ss_pred CCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHH
Confidence 5789998873 22221 367788999999999999999999999998888888876655554 5555555554555
No 338
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=40.01 E-value=4.7e+02 Score=27.50 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=91.0
Q ss_pred ccCHHHHHHHhhhcCCc--EEEEecCCCHH-HHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhC----cEEEE
Q 014746 206 DKDKEVISTWGARNNID--FLSLSHTRGAE-DVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEA----DGIIL 278 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d--~I~lsfV~sae-dv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~s----DgImI 278 (419)
++|.+-|+ .+++.-.+ .+..| -+.+ +.+++-++..+.| . ..+.--+-.......+..-+... +-|++
T Consensus 200 ~kD~eVLe-aaLe~~~G~kpLL~S--At~e~Ny~~ia~lAk~yg--~-~Vvv~s~~Din~ak~Ln~kL~~~Gv~~eDIVl 273 (389)
T TIGR00381 200 EKDPLVLE-KAAEVAEGERCLLAS--ANLDLDYEKIANAAKKYG--H-VVLSWTIMDINMQKTLNRYLLKRGLMPRDIVM 273 (389)
T ss_pred cCCHHHHH-HHHHHhCCCCcEEEe--cCchhhHHHHHHHHHHhC--C-eEEEEcCCcHHHHHHHHHHHHHcCCCHHHEEE
Confidence 77888886 66775333 45444 3444 6666666666655 2 22222223344444555544432 36888
Q ss_pred eCCCccCCCCchhHHHHHHHHHHHHH----HcCCcEEE-E-ccc---cccccC----CCcchh---hHhHHHHHHHcCCc
Q 014746 279 ARGNLGVDLPPEKVFLFQKAALYKCN----MAGKPAVV-T-RVV---DSMTDN----LRPTRA---EATDVANAVLDGSD 342 (419)
Q Consensus 279 argDLg~elg~e~v~~~qk~Ii~a~~----~~gkpvi~-T-qmL---eSM~~~----~~Ptra---Ev~Dv~nav~~G~D 342 (419)
.++=+.+..|++.....+.+|-.+|- ..|-|+|. + +.. |+.... ++-.|+ |+.-.......|+|
T Consensus 274 DP~t~alG~Gieya~s~~erIRraALkgD~~L~~Pii~~~~~~w~~kEa~~~~~~wG~~~~Rg~lwE~~ta~~~~~aG~d 353 (389)
T TIGR00381 274 DPTTCALGYGIEFSITNMERIRLSGLKGDTDLNMPMSSGTTNAWGAREAWMVDSEWGPREYRGPLWEIITGLTMMLAGVD 353 (389)
T ss_pred cCCCccccCCHHHHHHHHHHHHHHHhcCCcCCCCCeeccchhhhhheeeccCCCCCCChHHhchhhhHHHHHHHHHcCCc
Confidence 99998888888877777777766664 45778776 3 211 111111 111121 44555677788999
Q ss_pred eEEecccccCCCCHHHHHHHHHHHHHHH
Q 014746 343 AILLGAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 343 ~vmLs~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
.+|+. || ++|+++++++...
T Consensus 354 i~~m~-------HP-~sv~~~k~~~~~l 373 (389)
T TIGR00381 354 LFMML-------HP-VSVAVLKEIGNTL 373 (389)
T ss_pred EEEEe-------CH-HHHHHHHHHHHHH
Confidence 99996 67 7888888877643
No 339
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=39.96 E-value=3.7e+02 Score=26.37 Aligned_cols=144 Identities=15% Similarity=0.190 Sum_probs=82.8
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEecC-------------CCHHHHHHHHHHHHhcCCCCCceEEEEec-------CHHhH
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSHT-------------RGAEDVRHARDFLSQLGDLGQTQIFAKIE-------NTEGL 263 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsfV-------------~saedv~~v~~~l~~~~~~~~~~IiaKIE-------t~~gv 263 (419)
+|-+|.---+ .+-+.|+|.|....- -+.+++..--+.+.+.- +.+.|++=++ -.+++
T Consensus 17 ~~ayD~~sA~-l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~~fg~y~~~~~~av 93 (254)
T cd06557 17 LTAYDYPTAK-LADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADMPFGSYQTSPEQAL 93 (254)
T ss_pred EeCCCHHHHH-HHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeCCCCcccCCHHHHH
Confidence 3778877764 667889999875411 02222222222222222 3455778775 23457
Q ss_pred hhHHHHHhh--CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEE----E-Ecccccc---ccCCCcc---hhhH
Q 014746 264 THFDEILHE--ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAV----V-TRVVDSM---TDNLRPT---RAEA 330 (419)
Q Consensus 264 ~nl~eI~~~--sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi----~-TqmLeSM---~~~~~Pt---raEv 330 (419)
+|.-.+.+. ++||.|--| ..+...|+++.++|+||+ + -|--..+ ....+.. .+=+
T Consensus 94 ~~a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i 161 (254)
T cd06557 94 RNAARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLL 161 (254)
T ss_pred HHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHH
Confidence 787777773 588888433 245677888999999988 2 2222121 2222221 1122
Q ss_pred hHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHh
Q 014746 331 TDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 331 ~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
.+.-.....|+|+++|- |- |. +.++.|+++..
T Consensus 162 ~ra~a~~~AGA~~i~lE-----~v-~~---~~~~~i~~~v~ 193 (254)
T cd06557 162 EDALALEEAGAFALVLE-----CV-PA---ELAKEITEALS 193 (254)
T ss_pred HHHHHHHHCCCCEEEEc-----CC-CH---HHHHHHHHhCC
Confidence 55666778899999994 22 32 35666666654
No 340
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=39.44 E-value=4.1e+02 Score=26.63 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=76.8
Q ss_pred CceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE--Eccc--cccccCCC
Q 014746 250 QTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV--TRVV--DSMTDNLR 324 (419)
Q Consensus 250 ~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~--TqmL--eSM~~~~~ 324 (419)
.+++....... .++.+.+-++. .+-||+--- ++++++.-..-+++...|+++|.++=. .++. |-++....
T Consensus 77 ~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s 151 (293)
T PRK07315 77 TVPVAIHLDHG-HYEDALECIEVGYTSIMFDGS----HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG 151 (293)
T ss_pred CCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc
Confidence 45677777776 55555555544 478888643 356677788889999999999999855 3332 22322111
Q ss_pred cchhhHhHHHHHHHcCCceEEecccccCCCCHH----HHHHHHHHHHHHHh
Q 014746 325 PTRAEATDVANAVLDGSDAILLGAETLRGLYPV----ETISIVGKICAEAK 371 (419)
Q Consensus 325 PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~----eaV~~~~~I~~~aE 371 (419)
. .....++..|+..|+|++-++--|.=|.||- --.+.+.+|.+..-
T Consensus 152 ~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~ 201 (293)
T PRK07315 152 E-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP 201 (293)
T ss_pred C-CCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc
Confidence 1 1233445667789999999997788788853 34667777777663
No 341
>PRK07695 transcriptional regulator TenI; Provisional
Probab=39.42 E-value=1.1e+02 Score=28.30 Aligned_cols=34 Identities=9% Similarity=-0.029 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHH
Q 014746 45 IISGCLNAGMSVARFDFSWGDTAYHQETLENLKI 78 (419)
Q Consensus 45 ~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~ 78 (419)
.+.+++++|++.+-|.--|.+.++..+.+..+++
T Consensus 19 ~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 19 AVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3445899999999999999999988888777763
No 342
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=39.23 E-value=3.8e+02 Score=26.22 Aligned_cols=93 Identities=11% Similarity=0.121 Sum_probs=54.4
Q ss_pred HHhhhcCCcEEEEe------cCCCHHHHHHHHHH-HHhcCCCCCceEEEEec---CHHhHhhHHHHHhh-CcEEEEeCCC
Q 014746 214 TWGARNNIDFLSLS------HTRGAEDVRHARDF-LSQLGDLGQTQIFAKIE---NTEGLTHFDEILHE-ADGIILARGN 282 (419)
Q Consensus 214 ~~~l~~g~d~I~ls------fV~saedv~~v~~~-l~~~~~~~~~~IiaKIE---t~~gv~nl~eI~~~-sDgImIargD 282 (419)
++.++.|+|++.+. +-=|.++=.++-+. .+..+ .+..|++-+- |.++++.+...-+. +|++|+.+--
T Consensus 29 ~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~--~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~ 106 (289)
T PF00701_consen 29 DFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA--GRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPY 106 (289)
T ss_dssp HHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT--TSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEEST
T ss_pred HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc--CceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccc
Confidence 47789999999884 22334444444443 33344 5788998885 45666665554444 5999986543
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
... ..-+.+.. ..-..|.+.++|+++
T Consensus 107 ~~~-~s~~~l~~---y~~~ia~~~~~pi~i 132 (289)
T PF00701_consen 107 YFK-PSQEELID---YFRAIADATDLPIII 132 (289)
T ss_dssp SSS-CCHHHHHH---HHHHHHHHSSSEEEE
T ss_pred ccc-chhhHHHH---HHHHHHhhcCCCEEE
Confidence 322 22334443 334445667888887
No 343
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=39.15 E-value=1.1e+02 Score=29.01 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=50.8
Q ss_pred CCeEEEEec-----CCCCCC-HHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCc-eEEEEecCCCeEEE
Q 014746 28 AMTKIVGTL-----GPRSRS-VEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKL-CAVMLDTIGPELLV 100 (419)
Q Consensus 28 ~~tkIi~Ti-----Gp~~~~-~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~-i~Il~Dl~GPkIR~ 100 (419)
..+|||++- .|+..+ .+.+++|.+.|.|++||-..=-+.++..++++..+++.+....| +++-+--.|.--|+
T Consensus 117 ~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRi 196 (228)
T TIGR01093 117 GGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRV 196 (228)
T ss_pred CCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhh
Confidence 479999998 243332 35778899999999999998888888888887776664443444 45555444545555
No 344
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=39.13 E-value=1.1e+02 Score=27.93 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCce
Q 014746 43 VEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLC 87 (419)
Q Consensus 43 ~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i 87 (419)
.+.+++++++|++.+-|..-+.+..+..+.+..++...+.++.++
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l 60 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPF 60 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeE
Confidence 567889999999999999888888888899999999887766443
No 345
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=38.93 E-value=4.1e+02 Score=26.47 Aligned_cols=112 Identities=20% Similarity=0.242 Sum_probs=62.1
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEE--EeC-CCccCCCCchh
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGII--LAR-GNLGVDLPPEK 291 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgIm--Iar-gDLg~elg~e~ 291 (419)
.+.+.|+|++++|-.- .|.-..+.+.+.+.| +..|.-+==----+.++.|++.++|.+ ++| |==|++.+.
T Consensus 117 ~~~~~GvdGlivpDLP-~ee~~~~~~~~~~~g----i~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~-- 189 (265)
T COG0159 117 RAKEAGVDGLLVPDLP-PEESDELLKAAEKHG----IDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPV-- 189 (265)
T ss_pred HHHHcCCCEEEeCCCC-hHHHHHHHHHHHHcC----CcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCccc--
Confidence 4457788888777543 333445555555544 222222222223356788888886654 344 333444432
Q ss_pred HHHHHHHHHHHHHH-cCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 292 VFLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 292 v~~~qk~Ii~a~~~-~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
...-++.++..|+ .++|+.+ -. +=+++.+.++.++ +|++...
T Consensus 190 -~~~~~~~v~~vr~~~~~Pv~vGFG---------Is~~e~~~~v~~~----ADGVIVG 233 (265)
T COG0159 190 -SADVKELVKRVRKYTDVPVLVGFG---------ISSPEQAAQVAEA----ADGVIVG 233 (265)
T ss_pred -chhHHHHHHHHHHhcCCCeEEecC---------cCCHHHHHHHHHh----CCeEEEc
Confidence 2224555566665 4899887 43 4456666666655 7777775
No 346
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=38.86 E-value=1.1e+02 Score=27.20 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCc
Q 014746 43 VEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKL 86 (419)
Q Consensus 43 ~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~ 86 (419)
.+.+++++++|++.+-|..-.++..++.+.++.+++..+.++.+
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~ 58 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVP 58 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 56789999999999999888888888888888888776655543
No 347
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=38.85 E-value=80 Score=30.46 Aligned_cols=74 Identities=12% Similarity=0.199 Sum_probs=42.2
Q ss_pred HhhhcCCcEEEEecCCCHHH--------HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCC
Q 014746 215 WGARNNIDFLSLSHTRGAED--------VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVD 286 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saed--------v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~e 286 (419)
.|...|++||+ |||...+| ++++.+.+...+ .+++|++ .++.|..++.+
T Consensus 121 ~Aa~aGa~yvs-PyvgRi~d~g~D~~~~i~~i~~~~~~~~--~~tkILa-----AS~r~~~~v~~--------------- 177 (222)
T PRK12656 121 LAIEAGADYLA-PYYNRMENLNIDSNAVIGQLAEAIDREN--SDSKILA-----ASFKNVAQVNK--------------- 177 (222)
T ss_pred HHHHCCCCEEe-cccchhhhcCCCHHHHHHHHHHHHHhcC--CCCEEEE-----EecCCHHHHHH---------------
Confidence 45789998765 99987654 233444444434 3444443 23344444332
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcEEE--EccccccccCCCcch
Q 014746 287 LPPEKVFLFQKAALYKCNMAGKPAVV--TRVVDSMTDNLRPTR 327 (419)
Q Consensus 287 lg~e~v~~~qk~Ii~a~~~~gkpvi~--TqmLeSM~~~~~Ptr 327 (419)
|.++|...++ -.+|+.|.++|....
T Consensus 178 ----------------a~~~G~d~vTvp~~vl~~l~~~p~t~~ 204 (222)
T PRK12656 178 ----------------AFALGAQAVTAGPDVFEAAFAMPSIQK 204 (222)
T ss_pred ----------------HHHcCCCEEecCHHHHHHHhcCCcHHH
Confidence 3455777666 577777777766543
No 348
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=38.74 E-value=1.6e+02 Score=29.15 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=43.1
Q ss_pred CHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhH--hhHHHHHhh-CcEEEEeC
Q 014746 208 DKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGL--THFDEILHE-ADGIILAR 280 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv--~nl~eI~~~-sDgImIar 280 (419)
..+.+. .+++.|+|+|.+.-+ ++++++++.+.+.... .+++++| --|+ +|+.++++. +|+|.++.
T Consensus 192 t~eea~-~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~--~~i~i~A----sGGI~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 192 SLEEAL-AAAEAGADILQLDKF-SPEELAELVPKLRSLA--PPVLLAA----AGGINIENAAAYAAAGADILVTSA 259 (272)
T ss_pred CHHHHH-HHHHcCCCEEEECCC-CHHHHHHHHHHHhccC--CCceEEE----ECCCCHHHHHHHHHcCCcEEEECh
Confidence 345554 457999999999755 5577777777665332 2444443 3344 788888888 79997753
No 349
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=38.70 E-value=2.7e+02 Score=27.59 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh--CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEcc
Q 014746 238 ARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE--ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRV 315 (419)
Q Consensus 238 v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~--sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~Tqm 315 (419)
+++.|.... .-...|..+-++... |++.. -|.++|. .|=+.-.+..++ .++.+++..|.++++
T Consensus 9 lk~~L~~G~--~~~G~~~~~~sp~~~----E~~a~~GfD~v~iD-----~EHg~~~~~~l~-~~i~a~~~~g~~~lV--- 73 (267)
T PRK10128 9 FKEGLRKGE--VQIGLWLSSTTSYMA----EIAATSGYDWLLID-----GEHAPNTIQDLY-HQLQAIAPYASQPVI--- 73 (267)
T ss_pred HHHHHHcCC--ceEEEEecCCCcHHH----HHHHHcCCCEEEEc-----cccCCCCHHHHH-HHHHHHHhcCCCeEE---
Confidence 556665422 334566777776544 44444 4999984 232332334333 578888999999887
Q ss_pred ccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 316 VDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 316 LeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.-|.+. -..+.++.-.|+++||.-
T Consensus 74 -----Rvp~~~---~~~i~r~LD~GA~GIivP 97 (267)
T PRK10128 74 -----RPVEGS---KPLIKQVLDIGAQTLLIP 97 (267)
T ss_pred -----ECCCCC---HHHHHHHhCCCCCeeEec
Confidence 222333 356678888899999983
No 350
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=38.49 E-value=90 Score=31.29 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=45.5
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCce
Q 014746 31 KIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLC 87 (419)
Q Consensus 31 kIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i 87 (419)
.+..-+=- + +.+.+++.+++|.+..=|..||-+.++..+.-..+++.+..+|-++
T Consensus 79 PV~lHLDH-~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 79 PVAIHLDH-G-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred cEEEECCC-C-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 45555533 3 6889999999999999999999999999999888888888877555
No 351
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=38.39 E-value=1.9e+02 Score=27.49 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE--
Q 014746 235 VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-- 312 (419)
Q Consensus 235 v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-- 312 (419)
+..+++.+.+.+ .++.+-+--+.. .-+|+++++.-.|.|+.+-.+ +.....+-..|+++++|.+.
T Consensus 77 a~~~~~~l~~~n--p~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~----------~~~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 77 AEAAAERLRAIN--PDVEIEAYNERL-DAENAEELIAGYDLVLDCTDN----------FATRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred HHHHHHHHHHhC--CCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 344556666666 555544433332 236788888888988876444 24556788999999999987
Q ss_pred EccccccccCCCc
Q 014746 313 TRVVDSMTDNLRP 325 (419)
Q Consensus 313 TqmLeSM~~~~~P 325 (419)
+.=+..++..-.|
T Consensus 144 ~~g~~g~v~~~~p 156 (228)
T cd00757 144 VLGFEGQVTVFIP 156 (228)
T ss_pred eccCEEEEEEECC
Confidence 3333344433334
No 352
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=38.19 E-value=3.4e+02 Score=26.96 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred eecCCCCCc-cCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEec---CHHhHhhHHHHHhhC
Q 014746 198 RIDLPTLTD-KDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIE---NTEGLTHFDEILHEA 273 (419)
Q Consensus 198 ~~~lp~lte-~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIE---t~~gv~nl~eI~~~s 273 (419)
.+.+|.+|| .|.+++. .+.+. +|.+-++ .++.++-.-+++.-+ .+..|..|== |++-..+.-|-+...
T Consensus 79 ~~GlpvvTeV~~~~~~~-~v~~~-~DilQIg-Arn~rn~~LL~a~g~-----t~kpV~lKrG~~~t~~e~~~aaeyi~~~ 150 (264)
T PRK05198 79 TFGVPVLTDVHEPEQAA-PVAEV-VDVLQIP-AFLCRQTDLLVAAAK-----TGKVVNIKKGQFLAPWDMKNVVDKVREA 150 (264)
T ss_pred HHCCceEEEeCCHHHHH-HHHhh-CcEEEEC-chhcchHHHHHHHhc-----cCCeEEecCCCcCCHHHHHHHHHHHHHc
Q ss_pred ---------cEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE--E---ccccccccCCCcchhhHhHHH-HHHH
Q 014746 274 ---------DGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV--T---RVVDSMTDNLRPTRAEATDVA-NAVL 338 (419)
Q Consensus 274 ---------DgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~--T---qmLeSM~~~~~PtraEv~Dv~-nav~ 338 (419)
-|+.++...|.+++. .+|.++ ..+.|||+ | |+-...-....-.|.-+..++ .|+.
T Consensus 151 Gn~~vilcERG~tf~y~r~~~D~~--~vp~~k--------~~~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA 220 (264)
T PRK05198 151 GNDKIILCERGTSFGYNNLVVDMR--GLPIMR--------ETGAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVA 220 (264)
T ss_pred CCCeEEEEeCCCCcCCCCeeechh--hhHHHh--------hCCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHH
Q ss_pred cCCceEEe
Q 014746 339 DGSDAILL 346 (419)
Q Consensus 339 ~G~D~vmL 346 (419)
.|+|++|+
T Consensus 221 ~GadGl~i 228 (264)
T PRK05198 221 VGVAGLFI 228 (264)
T ss_pred cCCCEEEE
No 353
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.00 E-value=4.1e+02 Score=26.29 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=68.0
Q ss_pred CCCCccCHHHHH-------HHhhhcCCcEEEEecC-------------CCH----------------HHHHHHHHHHHhc
Q 014746 202 PTLTDKDKEVIS-------TWGARNNIDFLSLSHT-------------RGA----------------EDVRHARDFLSQL 245 (419)
Q Consensus 202 p~lte~D~~di~-------~~~l~~g~d~I~lsfV-------------~sa----------------edv~~v~~~l~~~ 245 (419)
..||..|.+.+. +.+.++|+|+|=+-.- +.. +-++++|+.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~--- 205 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV--- 205 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHc---
Confidence 356777666553 2456789999877543 221 2233333322
Q ss_pred CCCCCceEEEEecCH----------HhHhhHHHHHhh-CcEEEEeCCCccCCCCc----hhHHHHHHHHHH-HHHHcCCc
Q 014746 246 GDLGQTQIFAKIENT----------EGLTHFDEILHE-ADGIILARGNLGVDLPP----EKVFLFQKAALY-KCNMAGKP 309 (419)
Q Consensus 246 ~~~~~~~IiaKIEt~----------~gv~nl~eI~~~-sDgImIargDLg~elg~----e~v~~~qk~Ii~-a~~~~gkp 309 (419)
+ .+..|..||-.. ++++-+..+.+. .|.|-+..|+..-.... ..-.......+. ..+..++|
T Consensus 206 g--~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iP 283 (327)
T cd02803 206 G--PDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIP 283 (327)
T ss_pred C--CCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCC
Confidence 3 567888888632 223333333333 58888877764322110 000111112222 23344899
Q ss_pred EEE-EccccccccCCCcchhhHhHHHHHHHc-CCceEEecc
Q 014746 310 AVV-TRVVDSMTDNLRPTRAEATDVANAVLD-GSDAILLGA 348 (419)
Q Consensus 310 vi~-TqmLeSM~~~~~PtraEv~Dv~nav~~-G~D~vmLs~ 348 (419)
++. ..+ -|. .++..++.. |+|.|++..
T Consensus 284 Vi~~Ggi---------~t~---~~a~~~l~~g~aD~V~igR 312 (327)
T cd02803 284 VIAVGGI---------RDP---EVAEEILAEGKADLVALGR 312 (327)
T ss_pred EEEeCCC---------CCH---HHHHHHHHCCCCCeeeecH
Confidence 987 442 233 345566776 799999973
No 354
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=37.95 E-value=5.6e+02 Score=27.82 Aligned_cols=167 Identities=13% Similarity=0.117 Sum_probs=96.2
Q ss_pred CcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCC-CHHHHHHHHHHHHhcCC--CCCceEEEEec-----CH
Q 014746 189 LYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTR-GAEDVRHARDFLSQLGD--LGQTQIFAKIE-----NT 260 (419)
Q Consensus 189 ~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~-saedv~~v~~~l~~~~~--~~~~~IiaKIE-----t~ 260 (419)
|-|-..|+..+ |..++..|.+...+.|+|.|=+.|.. ++++.+.++.+...... .....+.++|- ..
T Consensus 93 RDGeQ~~gv~f-----s~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~ 167 (503)
T PLN03228 93 RDGEQSPGGSL-----TPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKK 167 (503)
T ss_pred CCCCCCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCH
Confidence 44555556544 66777777666677899999887754 56666666555432110 00111222221 11
Q ss_pred HhHhhHHHHHhh-----Cc--EEEEeCCCccCCC----CchhHHHHHHHHHHHHHHcCCc-EEE-EccccccccCCCcch
Q 014746 261 EGLTHFDEILHE-----AD--GIILARGNLGVDL----PPEKVFLFQKAALYKCNMAGKP-AVV-TRVVDSMTDNLRPTR 327 (419)
Q Consensus 261 ~gv~nl~eI~~~-----sD--gImIargDLg~el----g~e~v~~~qk~Ii~a~~~~gkp-vi~-TqmLeSM~~~~~Ptr 327 (419)
+. ++..+++ .+ .++++-.|+-.+. ..+++.......+..|+.+|.. +.+ .+ ...+-..
T Consensus 168 ~d---Id~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~E------Da~Rtd~ 238 (503)
T PLN03228 168 RD---IEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCE------DGGRSDK 238 (503)
T ss_pred hh---HHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccc------cccccCH
Confidence 12 2333322 13 3344555554332 2345555567899999999975 444 32 1222223
Q ss_pred hhHhHHH-HHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHH
Q 014746 328 AEATDVA-NAVLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 328 aEv~Dv~-nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
+.+.+++ .+...|+|.+-|. +|.=.-.|.+.-+++..+.+..
T Consensus 239 efl~~~~~~a~~~Gad~I~l~-DTvG~~tP~~v~~lV~~l~~~~ 281 (503)
T PLN03228 239 EFLCKILGEAIKAGATSVGIA-DTVGINMPHEFGELVTYVKANT 281 (503)
T ss_pred HHHHHHHHHHHhcCCCEEEEe-cCCCCCCHHHHHHHHHHHHHHh
Confidence 3344444 5667899999887 8888899999988888887654
No 355
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=37.91 E-value=2.1e+02 Score=26.73 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 235 VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 235 v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
++.+++.+.+.+ +.+.+-+.-+... ++.++.....|.|+.+..+ ...+..+-+.|+++|+|.+.
T Consensus 77 a~a~~~~L~~lN--p~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~ 140 (197)
T cd01492 77 AEASLERLRALN--PRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYA 140 (197)
T ss_pred HHHHHHHHHHHC--CCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 345566677766 6665554444333 4566777778988876444 34566778899999999987
No 356
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=37.88 E-value=4.3e+02 Score=26.41 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=54.0
Q ss_pred HHhhhcCCcEEEEe------cCCCHHHHHHHHHHHHh-cCCCCCceEEEEe---cCHHhHhhHHHHHhh-CcEEEEeCCC
Q 014746 214 TWGARNNIDFLSLS------HTRGAEDVRHARDFLSQ-LGDLGQTQIFAKI---ENTEGLTHFDEILHE-ADGIILARGN 282 (419)
Q Consensus 214 ~~~l~~g~d~I~ls------fV~saedv~~v~~~l~~-~~~~~~~~IiaKI---Et~~gv~nl~eI~~~-sDgImIargD 282 (419)
.|.++.|+|+|.+. +--|.++=.++-+...+ .+ ..+++|+-+ =|.++++....--+. +||+|+-+-.
T Consensus 32 ~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~--grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~Py 109 (299)
T COG0329 32 EFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVG--GRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPY 109 (299)
T ss_pred HHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHC--CCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 47788999988863 34455555555444433 34 567788876 355666655554444 5999985433
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+---- .+.+...-+.| |.+.+.|+|+
T Consensus 110 Y~k~~-~~gl~~hf~~i---a~a~~lPvil 135 (299)
T COG0329 110 YNKPS-QEGLYAHFKAI---AEAVDLPVIL 135 (299)
T ss_pred CcCCC-hHHHHHHHHHH---HHhcCCCEEE
Confidence 22211 23444444444 4444888876
No 357
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=37.74 E-value=1e+02 Score=24.82 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=28.3
Q ss_pred eEeccCc-ccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEE
Q 014746 130 LLPINFS-GLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIK 180 (419)
Q Consensus 130 ~i~v~~~-~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~ 180 (419)
.+.+..| ..+..+.+|+.|-+| | +.|.| .++.++.+...+.
T Consensus 21 ~~~i~~~~~~~~~~~~g~SIavn-----G-vcLTV----~~~~~~~f~~~l~ 62 (85)
T PF00677_consen 21 RLRIEIPDKILSDLKIGGSIAVN-----G-VCLTV----TDINEDWFEVDLI 62 (85)
T ss_dssp EEEEEESTGGGGTG-TTSEEEET-----T-EEEEE----EEEETTEEEEEEE
T ss_pred EEEEEcCHHHHhhCccCcEEEEC-----C-eeeEE----EEecCCEEEEech
Confidence 3444444 678899999999999 7 44555 6667788877653
No 358
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=37.49 E-value=2.6e+02 Score=24.59 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHH---------HHHHHHHHHHH
Q 014746 38 PRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQ---------ETLENLKIAIK 81 (419)
Q Consensus 38 p~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~---------~~i~~ir~a~~ 81 (419)
+...+.+.+++|.++|.+.+.+++-|++.+.+. +.++.++.+.+
T Consensus 95 ~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (216)
T smart00729 95 PGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLRE 147 (216)
T ss_pred cccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 456678999999999999899999888887664 34555555543
No 359
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=37.42 E-value=5.4e+02 Score=27.46 Aligned_cols=153 Identities=17% Similarity=0.115 Sum_probs=89.0
Q ss_pred CCCccCHHHHHHHhhhcCCcEEEE----------ecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhh-------
Q 014746 203 TLTDKDKEVISTWGARNNIDFLSL----------SHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTH------- 265 (419)
Q Consensus 203 ~lte~D~~di~~~~l~~g~d~I~l----------sfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~n------- 265 (419)
.++..|+..|.....+.|++.|=+ +|+.-- +-+.++.+ .+...+..+..++.--+..|..+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~-p~e~l~~l-~~~~~~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNED-PWERLRKI-RKAVKKTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCC-HHHHHHHH-HHhCCCCEEEEEeccccccccccCchhhHH
Confidence 456666666654555678887766 555422 33333333 22220022333355455556644
Q ss_pred --HHHHHhh-Cc--EEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHH-HHHHc
Q 014746 266 --FDEILHE-AD--GIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVA-NAVLD 339 (419)
Q Consensus 266 --l~eI~~~-sD--gImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~-nav~~ 339 (419)
++.-++. .| .|+.+-.|+ .. .+..++.++++|+.+-.+ + +....|+-+.+.+.+.+ .+...
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~---------~n-~~~~v~~ak~~G~~v~~~--i-~~t~~p~~~~~~~~~~a~~l~~~ 166 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFDALNDV---------RN-LETAVKATKKAGGHAQVA--I-SYTTSPVHTIDYFVKLAKEMQEM 166 (448)
T ss_pred HHHHHHHHCCCCEEEEEEecCcH---------HH-HHHHHHHHHHcCCeEEEE--E-EeecCCCCCHHHHHHHHHHHHHc
Confidence 1222222 35 344455554 22 445789999999865320 0 12224666667776666 56667
Q ss_pred CCceEEecccccCCCCHHHHHHHHHHHHHHHh
Q 014746 340 GSDAILLGAETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 340 G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
|+|.+.+. +|+=--.|.++-+.+..+.++..
T Consensus 167 Gad~I~i~-Dt~G~l~P~~v~~lv~alk~~~~ 197 (448)
T PRK12331 167 GADSICIK-DMAGILTPYVAYELVKRIKEAVT 197 (448)
T ss_pred CCCEEEEc-CCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999997 88888899999888888876553
No 360
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=37.32 E-value=1.1e+02 Score=26.94 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHhhhcCCcEEEEecC--CCHHHHHHHHHHHHhcC
Q 014746 212 ISTWGARNNIDFLSLSHT--RGAEDVRHARDFLSQLG 246 (419)
Q Consensus 212 i~~~~l~~g~d~I~lsfV--~saedv~~v~~~l~~~~ 246 (419)
+...+.+.++|+|++|+. .+..+++++.+.|++.+
T Consensus 46 i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~ 82 (137)
T PRK02261 46 FIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAG 82 (137)
T ss_pred HHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcC
Confidence 334668899999999984 45556666666666654
No 361
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=37.28 E-value=4.4e+02 Score=26.37 Aligned_cols=146 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-
Q 014746 235 VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV- 312 (419)
Q Consensus 235 v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~- 312 (419)
+..++.+..+.. ++|...+....-++.+..-++. .+-||+. |-.+++++=-..-+++++.|++.|..|=-
T Consensus 63 ~~~~~~~A~~~~----VPV~lHLDHg~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaE 134 (284)
T PRK09195 63 LAIVSAAAKQYH----HPLALHLDHHEKFDDIAQKVRSGVRSVMID----GSHLPFAQNISLVKEVVDFCHRFDVSVEAE 134 (284)
T ss_pred HHHHHHHHHHCC----CCEEEECCCCCCHHHHHHHHHcCCCEEEeC----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Q ss_pred EccccccccCCCcc-----hhhHhHHHHHHHc-CCceEEecccccCCCC---HHHHHHHHHHHHHHHhc------CCcCh
Q 014746 313 TRVVDSMTDNLRPT-----RAEATDVANAVLD-GSDAILLGAETLRGLY---PVETISIVGKICAEAKT------TNATS 377 (419)
Q Consensus 313 TqmLeSM~~~~~Pt-----raEv~Dv~nav~~-G~D~vmLs~ETa~G~y---P~eaV~~~~~I~~~aE~------~~~~~ 377 (419)
=..+..--....-. .....+...|+.. |+|++-.|--|+=|.| |---...|.+|.+...- .+.-+
T Consensus 135 lG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~ 214 (284)
T PRK09195 135 LGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLP 214 (284)
T ss_pred EecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCC
Q ss_pred HHHHHHHHHHH
Q 014746 378 ESALKVALDYG 388 (419)
Q Consensus 378 ~~~~~~a~~~~ 388 (419)
++.++.|++.+
T Consensus 215 ~e~~~~ai~~G 225 (284)
T PRK09195 215 TKDIQQTIKLG 225 (284)
T ss_pred HHHHHHHHHcC
No 362
>PRK06801 hypothetical protein; Provisional
Probab=37.23 E-value=4.4e+02 Score=26.36 Aligned_cols=118 Identities=11% Similarity=0.119 Sum_probs=73.2
Q ss_pred CceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccC----C
Q 014746 250 QTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDN----L 323 (419)
Q Consensus 250 ~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~----~ 323 (419)
.+++........-++.+++-++. .+.||+.- -.+++++--..-++++..|+.+|.+|=. -..+-..-.. .
T Consensus 74 ~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~----S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~ 149 (286)
T PRK06801 74 DIPVVLNLDHGLHFEAVVRALRLGFSSVMFDG----STLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGE 149 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCcEEEEcC----CCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCC
Confidence 45666666665555555554444 47899843 2356677777778999999999998844 2222111100 0
Q ss_pred --CcchhhHhHHHHHH-HcCCceEEecccccCCCCHH---HHHHHHHHHHHHHh
Q 014746 324 --RPTRAEATDVANAV-LDGSDAILLGAETLRGLYPV---ETISIVGKICAEAK 371 (419)
Q Consensus 324 --~PtraEv~Dv~nav-~~G~D~vmLs~ETa~G~yP~---eaV~~~~~I~~~aE 371 (419)
.-......++..|+ ..|+|++-.+--|+-|+|+- .-.+.+..|.+...
T Consensus 150 ~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~ 203 (286)
T PRK06801 150 ADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTG 203 (286)
T ss_pred cccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcC
Confidence 00011224445666 57999999999999999954 35667777765543
No 363
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=37.17 E-value=4.8e+02 Score=26.76 Aligned_cols=161 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred ceecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHH--------HHHHHHHHHHhcCCCCCceEEEEec-CHHhHhhHH
Q 014746 197 IRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAE--------DVRHARDFLSQLGDLGQTQIFAKIE-NTEGLTHFD 267 (419)
Q Consensus 197 ~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~sae--------dv~~v~~~l~~~~~~~~~~IiaKIE-t~~gv~nl~ 267 (419)
..+..+.+..++.+++.++.-..++|++.+-.-.-.+ +...+.+.++..-..-+++|+.|+= +....+.+.
T Consensus 125 aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~ 204 (352)
T PRK05437 125 ANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAK 204 (352)
T ss_pred eecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHH
Q ss_pred HHHhh-CcEEEEeCCCccCCCCchhHHHHHHH-----------------HHHHHHHc--CCcEEE-EccccccccCCCcc
Q 014746 268 EILHE-ADGIILARGNLGVDLPPEKVFLFQKA-----------------ALYKCNMA--GKPAVV-TRVVDSMTDNLRPT 326 (419)
Q Consensus 268 eI~~~-sDgImIargDLg~elg~e~v~~~qk~-----------------Ii~a~~~~--gkpvi~-TqmLeSM~~~~~Pt 326 (419)
.+.++ +|+|.++-. | -.++..+...+.. .+..++++ ++|+|. ..+-
T Consensus 205 ~l~~~Gvd~I~Vsg~--G-Gt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~---------- 271 (352)
T PRK05437 205 RLADAGVKAIDVAGA--G-GTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIR---------- 271 (352)
T ss_pred HHHHcCCCEEEECCC--C-CCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCC----------
Q ss_pred hhhHhHHHHHHHcCCceEEecccccCC---CCHHHHHHHHHHHHHHHhc
Q 014746 327 RAEATDVANAVLDGSDAILLGAETLRG---LYPVETISIVGKICAEAKT 372 (419)
Q Consensus 327 raEv~Dv~nav~~G~D~vmLs~ETa~G---~yP~eaV~~~~~I~~~aE~ 372 (419)
.-.|+..++..|+|++++..---.+ .=+....+++.++..+...
T Consensus 272 --~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~ 318 (352)
T PRK05437 272 --NGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKI 318 (352)
T ss_pred --CHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHH
No 364
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=37.16 E-value=61 Score=32.10 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=36.6
Q ss_pred cCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHH
Q 014746 306 AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKI 366 (419)
Q Consensus 306 ~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I 366 (419)
...|+++ .. +-| -+|++.++..|+|+++++.-.+.-+.|++-.+-|+.-
T Consensus 188 ~~vpVivdAG---------Igt---~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~A 237 (267)
T CHL00162 188 AKIPVIIDAG---------IGT---PSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLA 237 (267)
T ss_pred CCCcEEEeCC---------cCC---HHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHH
Confidence 4688887 44 222 3688999999999999999999999995555555433
No 365
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=37.12 E-value=1.2e+02 Score=27.81 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCc
Q 014746 43 VEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKL 86 (419)
Q Consensus 43 ~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~ 86 (419)
.+.+++++++|++.+-+...+.+..++.+.+..+++..+.++.+
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVP 67 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 45788999999999999988888777777787777766655543
No 366
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=37.10 E-value=60 Score=27.94 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=29.6
Q ss_pred cccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcEE
Q 014746 136 SGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAIL 185 (419)
Q Consensus 136 ~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~l 185 (419)
.++.+.+++||+|..- .| |..+| .+++++.+..++..|..+
T Consensus 33 ~~m~~~Lk~GD~VvT~----gG-i~G~V----~~I~d~~v~leia~gv~i 73 (109)
T PRK05886 33 IDLHESLQPGDRVHTT----SG-LQATI----VGITDDTVDLEIAPGVVT 73 (109)
T ss_pred HHHHHhcCCCCEEEEC----CC-eEEEE----EEEeCCEEEEEECCCeEE
Confidence 4677899999999998 45 55566 445667888877655565
No 367
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=36.86 E-value=84 Score=38.34 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=95.8
Q ss_pred CeEEEEEEeCcEEecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEe---cCCCHHHHHHHHHHHHhcCCCC
Q 014746 173 EDVVCQIKNSAILARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLS---HTRGAEDVRHARDFLSQLGDLG 249 (419)
Q Consensus 173 ~~i~~~v~~gG~l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~ls---fV~saedv~~v~~~l~~~~~~~ 249 (419)
+.|+.++-.|. ++..|=.||+..+ |+ ..+.++ .+..|.|.|.=| -+.|.||+.++..-|++.+ .
T Consensus 929 ~~ieIKi~QGA---KPG~GG~Lpg~KV-----~~-~IA~~R--~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~--~ 995 (1485)
T PRK11750 929 EVLQIKVAQGA---KPGEGGQLPGDKV-----NP-LIARLR--YSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVN--P 995 (1485)
T ss_pred CEEEEEecCCC---CCCCCCcCccccC-----CH-HHHHHc--CCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhC--C
Confidence 34555555555 4456777788876 32 344453 466788876533 4668899988888888877 6
Q ss_pred CceEEEEecCHHhHhhHHH-HHhh-CcEEEEeCCCccC---------CCCch---hHHHHHHHHHHHHHHcCCcEEE-Ec
Q 014746 250 QTQIFAKIENTEGLTHFDE-ILHE-ADGIILARGNLGV---------DLPPE---KVFLFQKAALYKCNMAGKPAVV-TR 314 (419)
Q Consensus 250 ~~~IiaKIEt~~gv~nl~e-I~~~-sDgImIargDLg~---------elg~e---~v~~~qk~Ii~a~~~~gkpvi~-Tq 314 (419)
...|-.|+=...++..+.. ++++ +|.|.|.-+|=|. ..|++ .++.+++.+...--+..+.++. .+
T Consensus 996 ~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Gg 1075 (1485)
T PRK11750 996 KALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGG 1075 (1485)
T ss_pred CCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCC
Confidence 7789999987778877764 3333 6999996554321 22332 4555666555444444455555 55
Q ss_pred cccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 315 VVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 315 mLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
+. | -.|++-|++.|||.+-+
T Consensus 1076 l~---------t---~~Dv~kA~aLGAd~~~~ 1095 (1485)
T PRK11750 1076 LK---------T---GLDVIKAAILGAESFGF 1095 (1485)
T ss_pred cC---------C---HHHHHHHHHcCCccccc
Confidence 33 1 27899999999998755
No 368
>PLN02535 glycolate oxidase
Probab=36.85 E-value=74 Score=32.99 Aligned_cols=90 Identities=10% Similarity=0.163 Sum_probs=51.6
Q ss_pred HHHHHHhhhcCCcEEEEec---------CCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh----CcEE
Q 014746 210 EVISTWGARNNIDFLSLSH---------TRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE----ADGI 276 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~lsf---------V~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~----sDgI 276 (419)
++.+ .+.+.|+|+|.+|- +-+.+-+.++++.+ + .++.||+ --||.+-.+|+++ +|++
T Consensus 235 ~dA~-~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av---~--~~ipVi~----dGGIr~g~Dv~KALalGA~aV 304 (364)
T PLN02535 235 EDAI-KAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAV---G--GRVPVLL----DGGVRRGTDVFKALALGAQAV 304 (364)
T ss_pred HHHH-HHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHH---h--cCCCEEe----eCCCCCHHHHHHHHHcCCCEE
Confidence 4454 56899999999983 22233444444333 2 3456664 3577777777665 7999
Q ss_pred EEeCCCccC-C-CCch----hHHHHHHHHHHHHHHcCCc
Q 014746 277 ILARGNLGV-D-LPPE----KVFLFQKAALYKCNMAGKP 309 (419)
Q Consensus 277 mIargDLg~-e-lg~e----~v~~~qk~Ii~a~~~~gkp 309 (419)
++||.=|-. + -|-+ .+..+.+++-......|..
T Consensus 305 ~vGr~~l~~l~~~g~~gv~~~l~~l~~el~~~m~l~G~~ 343 (364)
T PLN02535 305 LVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCP 343 (364)
T ss_pred EECHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976642 1 2322 2223344455555555654
No 369
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=36.72 E-value=1e+02 Score=31.05 Aligned_cols=62 Identities=10% Similarity=0.037 Sum_probs=41.0
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEec
Q 014746 29 MTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDT 93 (419)
Q Consensus 29 ~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl 93 (419)
.+.+-.+++......+.++++.+.|.+.+.+.....+.++-.+.++.+|++ .|..+.+++|-
T Consensus 109 ~~~~~~~i~~~~~~~~~a~~~~~~G~~~~KvKvG~~~~~~d~~~v~air~~---~g~~~~l~vDa 170 (320)
T PRK02714 109 PLSYSALLPAGEAALQQWQTLWQQGYRTFKWKIGVDPLEQELKIFEQLLER---LPAGAKLRLDA 170 (320)
T ss_pred CCceeeecCCCHHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHh---cCCCCEEEEEC
Confidence 355666665543344567778899999999998766666556666666654 45445555554
No 370
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.70 E-value=3.5e+02 Score=28.02 Aligned_cols=85 Identities=8% Similarity=0.031 Sum_probs=47.7
Q ss_pred ceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhh
Q 014746 251 TQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAE 329 (419)
Q Consensus 251 ~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraE 329 (419)
+.+..++......+.++.+.++ +|.|.+.-..-....+...- -...+.+.+++.++|+|.. ...|...
T Consensus 132 V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~--~~~~i~~~ik~~~ipVIaG---------~V~t~e~ 200 (368)
T PRK08649 132 VIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEG--EPLNLKEFIYELDVPVIVG---------GCVTYTT 200 (368)
T ss_pred EEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcC--CHHHHHHHHHHCCCCEEEe---------CCCCHHH
Confidence 4444556545567777777766 59998842211112111100 0123566666779999852 2445443
Q ss_pred HhHHHHHHHcCCceEEeccc
Q 014746 330 ATDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 330 v~Dv~nav~~G~D~vmLs~E 349 (419)
.-.++..|+|++|...+
T Consensus 201 ---A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 201 ---ALHLMRTGAAGVLVGIG 217 (368)
T ss_pred ---HHHHHHcCCCEEEECCC
Confidence 34555679999999733
No 371
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=36.62 E-value=16 Score=33.11 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=36.4
Q ss_pred ccccccccccccccCCCCCCCCCCCeEEEEecC-CCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHH
Q 014746 5 NLLLEEPIRMASILEPSKPTFFPAMTKIVGTLG-PRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQ 70 (419)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~tkIi~TiG-p~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~ 70 (419)
-++|+||.=++.+.....+ ...-+|||=| |++.....|..|.++|..+ .=||+.+...
T Consensus 21 V~VvENp~Vf~~~~~~~~~----~~~pLVCt~G~p~~A~~~LL~~L~~~g~~l----~y~GDfDp~G 79 (152)
T PF09664_consen 21 VYVVENPAVFSALADELGA----SCPPLVCTSGQPSAAARRLLDRLAAAGARL----YYSGDFDPEG 79 (152)
T ss_pred EEEEecHHHHHHHHHhcCC----CCCeEEEcCCcHHHHHHHHHHHHHhCCCEE----EEecCCCHHH
Confidence 3556665555555544332 3566888887 6667777777787777655 4467776654
No 372
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=36.33 E-value=1.9e+02 Score=27.91 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 236 RHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 236 ~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
..+++.|.+.+ ..+.|.+.-+... -+|++++++..|.|+.+-.+ +..+..+-..|+++++|.+.
T Consensus 89 ~~a~~~l~~ln--p~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D~----------~~~r~~ln~~~~~~~ip~v~ 152 (245)
T PRK05690 89 ESARAALARIN--PHIAIETINARLD-DDELAALIAGHDLVLDCTDN----------VATRNQLNRACFAAKKPLVS 152 (245)
T ss_pred HHHHHHHHHHC--CCCEEEEEeccCC-HHHHHHHHhcCCEEEecCCC----------HHHHHHHHHHHHHhCCEEEE
Confidence 33445555555 5665555333322 25778888888988776432 34567788999999999987
No 373
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.28 E-value=4.2e+02 Score=28.26 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=56.4
Q ss_pred hhcCCcEEEEecCCCHHHHHHHHHHHHhcCCC------C-C-----ceEEEE---------------ecCHHhHhhHHHH
Q 014746 217 ARNNIDFLSLSHTRGAEDVRHARDFLSQLGDL------G-Q-----TQIFAK---------------IENTEGLTHFDEI 269 (419)
Q Consensus 217 l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~------~-~-----~~IiaK---------------IEt~~gv~nl~eI 269 (419)
...|+....+.+|-.-+.-+.+++.|...+.. + + +.+++. -+...=++++++.
T Consensus 61 asLGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll~~~~~~ 140 (467)
T COG2870 61 ASLGANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLLEKIKNA 140 (467)
T ss_pred HHcCCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccCcchhHHHHHHHHHHH
Confidence 45788888888888888888888877643210 0 0 011110 1233334567777
Q ss_pred HhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 270 LHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 270 ~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
+...|++++. +++-.-+.. -+.||..||++|+||.+
T Consensus 141 l~~~~~vVLS------DY~KG~L~~-~q~~I~~ar~~~~pVLv 176 (467)
T COG2870 141 LKSFDALVLS------DYAKGVLTN-VQKMIDLAREAGIPVLV 176 (467)
T ss_pred hhcCCEEEEe------ccccccchh-HHHHHHHHHHcCCcEEE
Confidence 7778999984 232222222 46789999999999997
No 374
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=36.24 E-value=2.8e+02 Score=28.80 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=25.7
Q ss_pred HHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccc
Q 014746 304 NMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (419)
Q Consensus 304 ~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ET 350 (419)
++.+.|+|. .. .- --.||..|+..|+|++|+..-.
T Consensus 286 ~~~~~~vi~dGG---------Ir---~g~Dv~KALaLGA~aV~iGr~~ 321 (361)
T cd04736 286 AATYKPVLIDSG---------IR---RGSDIVKALALGANAVLLGRAT 321 (361)
T ss_pred HHhCCeEEEeCC---------CC---CHHHHHHHHHcCCCEEEECHHH
Confidence 344799887 44 22 2479999999999999996443
No 375
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=36.20 E-value=3.5e+02 Score=24.94 Aligned_cols=131 Identities=18% Similarity=0.112 Sum_probs=71.3
Q ss_pred HHHHHHhhhcCCcEEEE-----ecCCC----HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEe
Q 014746 210 EVISTWGARNNIDFLSL-----SHTRG----AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILA 279 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~l-----sfV~s----aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIa 279 (419)
+.++ .+.+.|+|+|-+ +|+.+ .+.++++++.+. ....+..++-.+ .+.++.+.++ +|++.+-
T Consensus 20 ~~~~-~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~-----~~~~v~l~v~d~--~~~i~~~~~~g~d~v~vh 91 (220)
T PRK05581 20 EEVK-AVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK-----LPLDVHLMVENP--DRYVPDFAKAGADIITFH 91 (220)
T ss_pred HHHH-HHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC-----CcEEEEeeeCCH--HHHHHHHHHcCCCEEEEe
Confidence 3454 668899999999 98854 555555554331 112233455543 3345555554 5897663
Q ss_pred CCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecc--cccCC-CC
Q 014746 280 RGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA--ETLRG-LY 355 (419)
Q Consensus 280 rgDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~--ETa~G-~y 355 (419)
-+ .. ......++.++++|..+++ +. |. |..| ....+..++|.+++.+ .+..| .+
T Consensus 92 ~~-------~~---~~~~~~~~~~~~~~~~~g~~~~--------~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~ 149 (220)
T PRK05581 92 VE-------AS---EHIHRLLQLIKSAGIKAGLVLN--------PA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKF 149 (220)
T ss_pred ec-------cc---hhHHHHHHHHHHcCCEEEEEEC--------CC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccc
Confidence 22 11 1223458888999998876 32 11 2222 2334445678665532 23333 44
Q ss_pred HHHHHHHHHHHHHHH
Q 014746 356 PVETISIVGKICAEA 370 (419)
Q Consensus 356 P~eaV~~~~~I~~~a 370 (419)
+....+.++++....
T Consensus 150 ~~~~~~~i~~~~~~~ 164 (220)
T PRK05581 150 IPEVLEKIRELRKLI 164 (220)
T ss_pred cHHHHHHHHHHHHHH
Confidence 556666666665443
No 376
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=36.15 E-value=1.2e+02 Score=26.59 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=35.1
Q ss_pred HhHhhHHHHHhh--CcE--EEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 261 EGLTHFDEILHE--ADG--IILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 261 ~gv~nl~eI~~~--sDg--ImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
.+++++++.+.. .|. |++|-.|+.-..+.+....--++++..+++.+.++++
T Consensus 51 ~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil 106 (177)
T cd01822 51 GGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLL 106 (177)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 344455544433 354 4557778766666666666678899999999988887
No 377
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=36.09 E-value=2.3e+02 Score=26.64 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 295 FQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 295 ~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
+.+..++.++++|+++++ |= + +..++..++..|+|+++-
T Consensus 188 ~~~~~i~~~~~~g~~v~~Wtv------n-------~~~~~~~~~~~GVdgi~T 227 (230)
T cd08563 188 LTEEVVEELKKRGIPVRLWTV------N-------EEEDMKRLKDLGVDGIIT 227 (230)
T ss_pred cCHHHHHHHHHCCCEEEEEec------C-------CHHHHHHHHHCCCCEEeC
Confidence 467899999999999998 72 1 234557778889999874
No 378
>PRK15447 putative protease; Provisional
Probab=35.92 E-value=2.1e+02 Score=28.52 Aligned_cols=66 Identities=15% Similarity=0.015 Sum_probs=46.8
Q ss_pred CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 273 ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 273 sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
+|+|.+|-..++.-.++ ...-.++++..|+++||.+.+ +--+ .....|...+...+..|.|+++.+
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 79999997777765543 234446788889999999988 5211 122458888888888888988753
No 379
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=35.89 E-value=3e+02 Score=25.62 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 293 FLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 293 ~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
..+.+..++.++++|+++.+ |- + +. .....++..|+|+++-
T Consensus 176 ~~~~~~~v~~~~~~G~~v~~wtv------n----~~---~~~~~~~~~Gvd~i~T 217 (220)
T cd08579 176 STLNKEFIRQAHQNGKKVYVWTV------N----DP---DDMQRYLAMGVDGIIT 217 (220)
T ss_pred hhcCHHHHHHHHHCCCEEEEEcC------C----CH---HHHHHHHHcCCCEEeC
Confidence 33457899999999999998 72 1 12 3346777889999864
No 380
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=35.86 E-value=1.2e+02 Score=30.03 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=43.6
Q ss_pred cCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHh--HhhHHHHHhh-CcEEEEeC
Q 014746 207 KDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEG--LTHFDEILHE-ADGIILAR 280 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~g--v~nl~eI~~~-sDgImIar 280 (419)
...+.+. .+++.|+|+|++..+ ++++++++.+.+. .+++ ||-.-| .+|+.++++. +|+|-++.
T Consensus 190 ~s~eea~-~A~~~gaDyI~ld~~-~~e~l~~~~~~~~-----~~ip----i~AiGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 190 ETLEQLK-EALEAGADIIMLDNM-SPEELREAVALLK-----GRVL----LEASGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred CCHHHHH-HHHHcCCCEEEECCc-CHHHHHHHHHHcC-----CCCc----EEEECCCCHHHHHHHHHcCCCEEEEEe
Confidence 3456665 568999999999887 4788887776653 1233 333334 4688888887 79998864
No 381
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=35.86 E-value=4.1e+02 Score=25.62 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHH
Q 014746 294 LFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (419)
Q Consensus 294 ~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~ 363 (419)
.+....+..++++|+++++ |. ++.. ....+...++..|+|++.- .||-.+.+++
T Consensus 210 ~~~~~~v~~~~~~Gl~v~~wT~--~~~~-------n~~~~~~~l~~~GvdgiiT-------D~p~~~~~~~ 264 (265)
T cd08564 210 FWTEEFVKKAHENGLKVMTYFD--EPVN-------DNEEDYKVYLELGVDCICP-------NDPVLLVNFL 264 (265)
T ss_pred hhhHHHHHHHHHcCCEEEEecC--CCCC-------CCHHHHHHHHHcCCCEEEc-------CCHHHHHHhh
Confidence 3567889999999999998 83 1111 1133345567779998764 3787766654
No 382
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.79 E-value=4e+02 Score=25.52 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=68.6
Q ss_pred CHHHHHHHhhhcCCcEEEEec--CCCHHHHHHHHHHHHhcCCCCCceEEEEec---------------------CHHhHh
Q 014746 208 DKEVISTWGARNNIDFLSLSH--TRGAEDVRHARDFLSQLGDLGQTQIFAKIE---------------------NTEGLT 264 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~lsf--V~saedv~~v~~~l~~~~~~~~~~IiaKIE---------------------t~~gv~ 264 (419)
+.+|++ ..+..|++.|.+.- .++++.+.++.+.+ + ++ .+++-+- ....++
T Consensus 85 s~~~~~-~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~---g--~~-~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~ 157 (253)
T PRK02083 85 SVEDAR-RLLRAGADKVSINSAAVANPELISEAADRF---G--SQ-CIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVE 157 (253)
T ss_pred CHHHHH-HHHHcCCCEEEEChhHhhCcHHHHHHHHHc---C--CC-CEEEEEEeccCCCCCCEEEEEcCCceecCCCHHH
Confidence 466665 44778999988763 35666666665554 2 11 1222221 111122
Q ss_pred hHHHHHhh-CcEEEEeCCC-ccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHH-cC
Q 014746 265 HFDEILHE-ADGIILARGN-LGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL-DG 340 (419)
Q Consensus 265 nl~eI~~~-sDgImIargD-Lg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~-~G 340 (419)
-+.++.+. +|.+++-.-+ =|..-|+ .+ ..+-..++..+.|+|. ..+ - ...|+..+.. .|
T Consensus 158 ~~~~~~~~g~~~ii~~~i~~~g~~~g~-d~----~~i~~~~~~~~ipvia~GGv---------~---s~~d~~~~~~~~G 220 (253)
T PRK02083 158 WAKEVEELGAGEILLTSMDRDGTKNGY-DL----ELTRAVSDAVNVPVIASGGA---------G---NLEHFVEAFTEGG 220 (253)
T ss_pred HHHHHHHcCCCEEEEcCCcCCCCCCCc-CH----HHHHHHHhhCCCCEEEECCC---------C---CHHHHHHHHHhCC
Confidence 23333333 4777663211 1222232 12 2233345566899998 552 2 3456666665 59
Q ss_pred CceEEecccccCCCCHHHHH
Q 014746 341 SDAILLGAETLRGLYPVETI 360 (419)
Q Consensus 341 ~D~vmLs~ETa~G~yP~eaV 360 (419)
+|++|.+.=--.|.++.+.+
T Consensus 221 ~~gvivg~al~~~~~~~~~~ 240 (253)
T PRK02083 221 ADAALAASIFHFGEITIGEL 240 (253)
T ss_pred ccEEeEhHHHHcCCCCHHHH
Confidence 99999974444677776654
No 383
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=35.64 E-value=1.2e+02 Score=29.71 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCCE--EEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEE
Q 014746 43 VEIISGCLNAGMSV--ARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVML 91 (419)
Q Consensus 43 ~~~i~~li~~Gm~v--~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~ 91 (419)
...+++.++.|++. +|+|+.-...++..+.+..+++++.++|.|+-++.
T Consensus 96 ~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~ 146 (267)
T PRK07226 96 VGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMM 146 (267)
T ss_pred eecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34578899999985 45565543355566667777777777888776543
No 384
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=35.61 E-value=1.1e+02 Score=29.04 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=30.7
Q ss_pred HHHHHHhhhcCCcEEEEecC--CCHHHHHHHHHHHHhcCCCCCceEE
Q 014746 210 EVISTWGARNNIDFLSLSHT--RGAEDVRHARDFLSQLGDLGQTQIF 254 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~lsfV--~saedv~~v~~~l~~~~~~~~~~Ii 254 (419)
+++...+.+.++|+|++|+. .+..+++++.+.|++.+ .+++|+
T Consensus 129 e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~--~~~~i~ 173 (213)
T cd02069 129 EKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRG--IKIPLL 173 (213)
T ss_pred HHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcC--CCCeEE
Confidence 33334668899999999987 56777788777787665 344444
No 385
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=35.42 E-value=2.2e+02 Score=25.97 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHc-CCcEEE
Q 014746 235 VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMA-GKPAVV 312 (419)
Q Consensus 235 v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~-gkpvi~ 312 (419)
++.+++.+.+.+ ..+.+.+--+.... +|++++++-.|.|+.+-.+ +..+..+...|.++ ++|.+.
T Consensus 54 a~~~~~~l~~ln--p~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~ 119 (174)
T cd01487 54 VEALKENLREIN--PFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVC 119 (174)
T ss_pred HHHHHHHHHHHC--CCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEE
Confidence 555566676666 55665544333333 6788888888887776333 34556677777766 999987
No 386
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=35.42 E-value=82 Score=30.98 Aligned_cols=54 Identities=7% Similarity=-0.002 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCeE
Q 014746 43 VEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPEL 98 (419)
Q Consensus 43 ~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkI 98 (419)
.+..++++++|+++.=+|+.-...+++.++..-|+...+.++ ++|.+|+.-|++
T Consensus 28 ~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~--~plsIDT~~~~v 81 (261)
T PRK07535 28 QKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVD--VPLCIDSPNPAA 81 (261)
T ss_pred HHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCC--CCEEEeCCCHHH
Confidence 345677899999999999986666778888888888766555 557899876654
No 387
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=35.37 E-value=4.4e+02 Score=25.84 Aligned_cols=90 Identities=9% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHhhhcCCcEEEEe------cCCCHHHHHHHHHHHHhcCCCCCceEEEEec---CHHhHhhHHHHHhh-CcEEEEeCCCc
Q 014746 214 TWGARNNIDFLSLS------HTRGAEDVRHARDFLSQLGDLGQTQIFAKIE---NTEGLTHFDEILHE-ADGIILARGNL 283 (419)
Q Consensus 214 ~~~l~~g~d~I~ls------fV~saedv~~v~~~l~~~~~~~~~~IiaKIE---t~~gv~nl~eI~~~-sDgImIargDL 283 (419)
.|.++.|+|+|.+. +-=|.++-.++.+...+.. .. |++-+- |.++++.+..-.+. +|++|+.+--+
T Consensus 27 ~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~--~~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y 102 (279)
T cd00953 27 ENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT--DK--VIFQVGSLNLEESIELARAAKSFGIYAIASLPPYY 102 (279)
T ss_pred HHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc--CC--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 36677888888763 3344555555544443332 22 677764 33444444333333 48888866543
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 284 GVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 284 g~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
.....-+.+....+.+.. ..|+++
T Consensus 103 ~~~~~~~~i~~yf~~v~~-----~lpv~i 126 (279)
T cd00953 103 FPGIPEEWLIKYFTDISS-----PYPTFI 126 (279)
T ss_pred CCCCCHHHHHHHHHHHHh-----cCCEEE
Confidence 221122334444444444 677775
No 388
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=35.21 E-value=2.1e+02 Score=27.54 Aligned_cols=118 Identities=8% Similarity=0.089 Sum_probs=66.5
Q ss_pred HHHHHhhhcCCcEEEEecCC---------CHHHHHHHHHHHHhc-CCCCCceEEEE----e------cCHHhHhhHHHHH
Q 014746 211 VISTWGARNNIDFLSLSHTR---------GAEDVRHARDFLSQL-GDLGQTQIFAK----I------ENTEGLTHFDEIL 270 (419)
Q Consensus 211 di~~~~l~~g~d~I~lsfV~---------saedv~~v~~~l~~~-~~~~~~~IiaK----I------Et~~gv~nl~eI~ 270 (419)
.+ +++.+.|+|+|-+++-. +.+++.++++.+.+. + ..+.+.+- . +...+++.+...+
T Consensus 15 ~l-~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i 91 (279)
T cd00019 15 AL-KRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPS--ICLSVHAPYLINLASPDKEKREKSIERLKDEI 91 (279)
T ss_pred HH-HHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCC--CcEEEEcCceeccCCCCHHHHHHHHHHHHHHH
Confidence 35 47789999999775321 568999999999887 3 22222221 1 2334566666666
Q ss_pred hh-----CcEEEEeCCCccCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-EccccccccCC---CcchhhHhHHHHHH
Q 014746 271 HE-----ADGIILARGNLGVDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNL---RPTRAEATDVANAV 337 (419)
Q Consensus 271 ~~-----sDgImIargDLg~elg~----e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~---~PtraEv~Dv~nav 337 (419)
+. ++.+.+-+|-... ... +.+...-+++...|+++|+.+.+ +. -... ..|-.+..++...+
T Consensus 92 ~~A~~lG~~~v~~~~g~~~~-~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~-----~~~~~~~~~t~~~~~~li~~v 165 (279)
T cd00019 92 ERCEELGIRLLVFHPGSYLG-QSKEEGLKRVIEALNELIDKAETKGVVIALETM-----AGQGNEIGSSFEELKEIIDLI 165 (279)
T ss_pred HHHHHcCCCEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCC-----CCCCCCCCCCHHHHHHHHHhc
Confidence 55 3666665553211 111 23334446667777777887776 42 1111 23445555566555
No 389
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=35.19 E-value=94 Score=30.90 Aligned_cols=64 Identities=17% Similarity=0.287 Sum_probs=39.5
Q ss_pred HHHHHHhhhcCCcEEEEec---------CCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh----CcEE
Q 014746 210 EVISTWGARNNIDFLSLSH---------TRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE----ADGI 276 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~lsf---------V~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~----sDgI 276 (419)
++.+ .+.+.|+|+|.++- .-+.+-+.++++.+ . .++.||+ --|+.+-.+++++ +|++
T Consensus 184 ~~a~-~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~--~~ipvia----~GGI~~~~d~~kal~lGAd~V 253 (299)
T cd02809 184 EDAL-RAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAV---G--GRIEVLL----DGGIRRGTDVLKALALGADAV 253 (299)
T ss_pred HHHH-HHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh---c--CCCeEEE----eCCCCCHHHHHHHHHcCCCEE
Confidence 4454 56899999999853 12333344443333 2 3466776 3566666666654 7999
Q ss_pred EEeCCCc
Q 014746 277 ILARGNL 283 (419)
Q Consensus 277 mIargDL 283 (419)
++||.=|
T Consensus 254 ~ig~~~l 260 (299)
T cd02809 254 LIGRPFL 260 (299)
T ss_pred EEcHHHH
Confidence 9999654
No 390
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=35.00 E-value=3.2e+02 Score=26.90 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=62.9
Q ss_pred ccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCC-----CCCceEEEEecCHHhHhhHHHHHhhCcEEEEeC
Q 014746 206 DKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGD-----LGQTQIFAKIENTEGLTHFDEILHEADGIILAR 280 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~-----~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIar 280 (419)
..|.+.+...+.+.|+..+.++- .+.++...+.++...... .-|+.- .+-++.+.++.+.+.+.. +-=++|=
T Consensus 16 ~~d~~~vi~~a~~~gv~~~~~~g-~~~~~~~~~~~la~~y~~v~~~~G~HP~~-~~~~~~~~~~~l~~~~~~-~~~vvaI 92 (256)
T COG0084 16 DEDRDEVIARAREAGVKKMVVVG-TDLEDFKRALELAEKYPNVYAAVGVHPLD-ADEHSEEDLEELEQLAEH-HPKVVAI 92 (256)
T ss_pred cCCHHHHHHHHHHcCCcEEEEee-cCHHHHHHHHHHHHhCCCeEEEEeeCCCc-cccccHHHHHHHHHHHhc-CCCeEEE
Confidence 34556655577889999887774 556666666666554320 022222 333455666666666654 2334444
Q ss_pred CCccCCCCchhH--HHHH----HHHHHHHHHcCCcEEE-E
Q 014746 281 GNLGVDLPPEKV--FLFQ----KAALYKCNMAGKPAVV-T 313 (419)
Q Consensus 281 gDLg~elg~e~v--~~~q----k~Ii~a~~~~gkpvi~-T 313 (419)
|.-|.++-+..- ...| ++-+..|++.++|+++ +
T Consensus 93 GEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~ 132 (256)
T COG0084 93 GEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHT 132 (256)
T ss_pred EecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 677777655332 2345 4578899999999998 5
No 391
>PRK15108 biotin synthase; Provisional
Probab=34.98 E-value=1e+02 Score=31.45 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=23.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHHcCCCEEEEec
Q 014746 30 TKIVGTLGPRSRSVEIISGCLNAGMSVARFDF 61 (419)
Q Consensus 30 tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~ 61 (419)
..+++|+|+- +.+.+++|.++|++.+-+|+
T Consensus 125 i~v~~s~G~l--s~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 125 LETCMTLGTL--SESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred CEEEEeCCcC--CHHHHHHHHHcCCCEEeecc
Confidence 4678889964 48999999999999665543
No 392
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=34.89 E-value=1.1e+02 Score=29.59 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=38.7
Q ss_pred HhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHc
Q 014746 261 EGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLD 339 (419)
Q Consensus 261 ~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~ 339 (419)
...+.++.+++. .|+||||--| |.. ..--..++.+.+++.+|++. .|.. .+.+..
T Consensus 15 ~~~~~~~~~~~~gtdai~vGGS~-----~vt--~~~~~~~v~~ik~~~lPvil-----------fp~~------~~~i~~ 70 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIGGSQ-----GVT--YEKTDTLIEALRRYGLPIIL-----------FPSN------PTNVSR 70 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEcCCC-----ccc--HHHHHHHHHHHhccCCCEEE-----------eCCC------ccccCc
Confidence 345566777766 6999998433 221 12234456667788899996 2322 233556
Q ss_pred CCceEEec
Q 014746 340 GSDAILLG 347 (419)
Q Consensus 340 G~D~vmLs 347 (419)
++|+++.-
T Consensus 71 ~aDa~l~~ 78 (223)
T TIGR01768 71 DADALFFP 78 (223)
T ss_pred CCCEEEEE
Confidence 79988764
No 393
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=34.53 E-value=1.3e+02 Score=31.28 Aligned_cols=96 Identities=10% Similarity=0.098 Sum_probs=55.1
Q ss_pred HHHHHHHhhhcCCcEEEEecC------CCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh----CcEEEE
Q 014746 209 KEVISTWGARNNIDFLSLSHT------RGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE----ADGIIL 278 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV------~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~----sDgImI 278 (419)
.+|.+ .+.+.|+|+|.+|-- ..+..+..+.+.....+ .++.||+- -||.+-.+|+++ +|++||
T Consensus 239 ~eda~-~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~--~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~i 311 (367)
T TIGR02708 239 PEDAD-RALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVD--KRVPIVFD----SGVRRGQHVFKALASGADLVAL 311 (367)
T ss_pred HHHHH-HHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhC--CCCcEEee----CCcCCHHHHHHHHHcCCCEEEE
Confidence 56665 668999999988752 12223444444433333 45667764 455555555544 799999
Q ss_pred eCCCccC--CCCc---hh-HHHHHHHHHHHHHHcCCcEE
Q 014746 279 ARGNLGV--DLPP---EK-VFLFQKAALYKCNMAGKPAV 311 (419)
Q Consensus 279 argDLg~--elg~---e~-v~~~qk~Ii~a~~~~gkpvi 311 (419)
||-=|-. .-|. ++ +..++.++-......|..-+
T Consensus 312 gR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i 350 (367)
T TIGR02708 312 GRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTI 350 (367)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 9974432 1233 22 33455566666666666544
No 394
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=34.50 E-value=4e+02 Score=25.11 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=59.4
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCC
Q 014746 209 KEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLP 288 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg 288 (419)
.+++. .+++.|+||+..|. .+.+-++. ... .+..++.-..|++-+.+..+ .-+|.+-+-+.+ .+|
T Consensus 73 ~~~~~-~a~~aGA~fivsp~-~~~~v~~~----~~~----~~~~~~~G~~t~~E~~~A~~--~Gad~vk~Fpa~---~~G 137 (206)
T PRK09140 73 PEQVD-RLADAGGRLIVTPN-TDPEVIRR----AVA----LGMVVMPGVATPTEAFAALR--AGAQALKLFPAS---QLG 137 (206)
T ss_pred HHHHH-HHHHcCCCEEECCC-CCHHHHHH----HHH----CCCcEEcccCCHHHHHHHHH--cCCCEEEECCCC---CCC
Confidence 44554 56899999999885 33333322 222 33556655556544332222 125888764532 345
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEeccc
Q 014746 289 PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (419)
Q Consensus 289 ~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~E 349 (419)
++.+..+.+.+ . ..+|++- .. . ....+..+...|+|++-+++.
T Consensus 138 ~~~l~~l~~~~----~-~~ipvvaiGG---------I----~~~n~~~~~~aGa~~vav~s~ 181 (206)
T PRK09140 138 PAGIKALRAVL----P-PDVPVFAVGG---------V----TPENLAPYLAAGAAGFGLGSA 181 (206)
T ss_pred HHHHHHHHhhc----C-CCCeEEEECC---------C----CHHHHHHHHHCCCeEEEEehH
Confidence 44333322211 0 2588776 33 1 125567888889999998744
No 395
>TIGR02679 conserved hypothetical protein TIGR02679. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=34.49 E-value=21 Score=37.30 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=45.9
Q ss_pred ccccccccccccccCCCCCCCCCCCeEEEEecC-CCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHH-HHHHHHHH
Q 014746 5 NLLLEEPIRMASILEPSKPTFFPAMTKIVGTLG-PRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQ-ETLENLKI 78 (419)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~tkIi~TiG-p~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~-~~i~~ir~ 78 (419)
-++|+||..++....-..+ +..-+|||=| |+......|++|.++|.+ | +-||+.+.-. ++.+.+++
T Consensus 253 V~vvENp~vf~~~~~~~~~----~~~~lIct~G~p~~a~~~LL~~L~~~g~~---l-~YhGDfD~~Gi~Ia~~L~~ 320 (385)
T TIGR02679 253 VYVVENPNVLAIALDRLGP----RCAPLVCTDGQPNAAQIKLLDLLAAAGAR---L-YYHGDFDWPGLRIANGLIR 320 (385)
T ss_pred EEEEecHHHHHHHHHhcCC----CCceEEECCCcchHHHHHHHHHHHhcCCe---E-EEecCCChhHHHHHHHHHH
Confidence 4567777777766664433 2346999999 777788888999999965 4 6789998764 33344443
No 396
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=34.33 E-value=2.7e+02 Score=27.44 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=68.2
Q ss_pred hhcCCcEEEEecC--C---------CHHHHHHHHHHHHhcCCCCCceEEEEecC----HHhHhhHHHHHhh-CcEEE---
Q 014746 217 ARNNIDFLSLSHT--R---------GAEDVRHARDFLSQLGDLGQTQIFAKIEN----TEGLTHFDEILHE-ADGII--- 277 (419)
Q Consensus 217 l~~g~d~I~lsfV--~---------saedv~~v~~~l~~~~~~~~~~IiaKIEt----~~gv~nl~eI~~~-sDgIm--- 277 (419)
++.++|++=+.+- + ..+....+.+.+.+. .++.+++|+=- ..-..-+.+..+. .|||.
T Consensus 121 ~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~---~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~N 197 (295)
T PF01180_consen 121 LEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREA---VDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAIN 197 (295)
T ss_dssp HHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHH---HSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE--
T ss_pred hcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhc---cCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEec
Confidence 4588999876532 1 122333343333332 35789999944 2223333333322 48887
Q ss_pred -EeCCC-ccCCC-------------CchhHHHHHHHHHHHHHHcC--CcEEE-EccccccccCCCcchhhHhHHHHHHHc
Q 014746 278 -LARGN-LGVDL-------------PPEKVFLFQKAALYKCNMAG--KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLD 339 (419)
Q Consensus 278 -IargD-Lg~el-------------g~e~v~~~qk~Ii~a~~~~g--kpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~ 339 (419)
+..++ +-.+. |..-.+.+.+.+-..+++.+ .|+|- +.+. -..|+..++..
T Consensus 198 t~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~------------s~~da~e~l~a 265 (295)
T PF01180_consen 198 TFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIH------------SGEDAIEFLMA 265 (295)
T ss_dssp -EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--------------SHHHHHHHHHH
T ss_pred CccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcC------------CHHHHHHHHHh
Confidence 44444 22221 11345677777777777777 88876 5533 35688999999
Q ss_pred CCceEEecc
Q 014746 340 GSDAILLGA 348 (419)
Q Consensus 340 G~D~vmLs~ 348 (419)
|||+|.+..
T Consensus 266 GA~~Vqv~S 274 (295)
T PF01180_consen 266 GASAVQVCS 274 (295)
T ss_dssp TESEEEESH
T ss_pred CCCHheech
Confidence 999999983
No 397
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=34.23 E-value=1.9e+02 Score=31.26 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=96.8
Q ss_pred CCeEEEEEEeCcEEecCCcceeecCceecCCCCCccCHHHHHHHhhhcCCcEEEEe---cCCCHHHHHHHHHHHHhcCCC
Q 014746 172 GEDVVCQIKNSAILARQLYTLHVSQIRIDLPTLTDKDKEVISTWGARNNIDFLSLS---HTRGAEDVRHARDFLSQLGDL 248 (419)
Q Consensus 172 ~~~i~~~v~~gG~l~~~~Kgvnlp~~~~~lp~lte~D~~di~~~~l~~g~d~I~ls---fV~saedv~~v~~~l~~~~~~ 248 (419)
.+.++.++-.|. ++..|=+||+..+ |++ ...++ ....|+|.|.=| .+-|.+|+.++..-|++.+
T Consensus 235 a~~ieIKiaQGA---KPGeGG~Lpg~KV-----~~~-IA~~R--~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~-- 301 (485)
T COG0069 235 ADAIEIKIAQGA---KPGEGGQLPGEKV-----TPE-IAKTR--GSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEAN-- 301 (485)
T ss_pred cceEEEEeccCC---CCCCCCCCCCccC-----CHH-HHHhc--CCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcC--
Confidence 345555665555 5566667777776 332 44453 367788876532 4678999999999898886
Q ss_pred CCceEEEEecCHHhHhhHHH-HHhh-CcEEEEeCCCccCCC---------Cc---hhHHHHHHHHHHHHHHcCCcEEE-E
Q 014746 249 GQTQIFAKIENTEGLTHFDE-ILHE-ADGIILARGNLGVDL---------PP---EKVFLFQKAALYKCNMAGKPAVV-T 313 (419)
Q Consensus 249 ~~~~IiaKIEt~~gv~nl~e-I~~~-sDgImIargDLg~el---------g~---e~v~~~qk~Ii~a~~~~gkpvi~-T 313 (419)
..-.|..|+=...+++-+.. .+++ +|.|.|.-.|=|.-. |+ ..++.+++.+...-.+ .++.+. .
T Consensus 302 ~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glR-d~v~l~~~ 380 (485)
T COG0069 302 PWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLR-DKVKLIAD 380 (485)
T ss_pred CCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCc-ceeEEEec
Confidence 44559999988888887777 5554 699999655533322 22 1455555655544444 555544 3
Q ss_pred ccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 314 RVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 314 qmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
.-| -| -.||+-|++.|+|.+-..
T Consensus 381 Ggl--------~T---g~DVaka~aLGAd~v~~g 403 (485)
T COG0069 381 GGL--------RT---GADVAKAAALGADAVGFG 403 (485)
T ss_pred CCc--------cC---HHHHHHHHHhCcchhhhc
Confidence 222 12 368999999999986553
No 398
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=34.17 E-value=1.2e+02 Score=30.93 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=14.8
Q ss_pred HcCCcEEE--EccccccccCCCc
Q 014746 305 MAGKPAVV--TRVVDSMTDNLRP 325 (419)
Q Consensus 305 ~~gkpvi~--TqmLeSM~~~~~P 325 (419)
.+|...++ ..+|+.|.+++.|
T Consensus 234 laG~d~~Ti~p~ll~~L~~~~~~ 256 (313)
T cd00957 234 LAGCDYLTISPALLEELKNSTAK 256 (313)
T ss_pred HhCCCeEEcCHHHHHHHHhCCCc
Confidence 46777776 5777777777664
No 399
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.17 E-value=1e+02 Score=30.93 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=47.4
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhH--hhHHHHHhh-CcEEEEeC
Q 014746 209 KEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGL--THFDEILHE-ADGIILAR 280 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv--~nl~eI~~~-sDgImIar 280 (419)
.+... -+++.|+|.|++=... +++++++.+.++..+ .++ +||-.-|+ +|+.+.++. .|.|.+|.
T Consensus 209 l~ea~-eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~--~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 209 LEQLD-EVLAEGAELVLLDNFP-VWQTQEAVQRRDARA--PTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHHH-HHHHcCCCEEEeCCCC-HHHHHHHHHHHhccC--CCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 44554 4589999999999766 899999888776544 343 46666665 588888888 69998864
No 400
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=33.99 E-value=4.2e+02 Score=25.24 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=32.7
Q ss_pred HhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHH
Q 014746 330 ATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICA 368 (419)
Q Consensus 330 v~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~ 368 (419)
+.....++..|+|.++...--.....|.++++.+.+.+.
T Consensus 190 ~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 190 VMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred HhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 345778899999999998888888889999988877654
No 401
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=33.97 E-value=93 Score=28.65 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=57.3
Q ss_pred eecCceecCCCCCcc--CHHHHHHHhhh-cCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHH
Q 014746 193 HVSQIRIDLPTLTDK--DKEVISTWGAR-NNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEI 269 (419)
Q Consensus 193 nlp~~~~~lp~lte~--D~~di~~~~l~-~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI 269 (419)
..||..+.+-..+++ |.+.+..+..+ ..+|+|+.|.+-.-+.++.++..|..+. .+..++.=.|+...|=++-.+
T Consensus 27 ~~p~l~l~~~~~~el~~~~~~~~~~~~aia~ADii~~smlF~ed~v~~l~~~L~~~r--~~~~a~i~~~sapelm~lTrl 104 (164)
T PF11965_consen 27 HCPGLELSVFAAAELERDPEALEECEAAIARADIIFGSMLFIEDHVRPLLPALEARR--DHCPAMIIFESAPELMRLTRL 104 (164)
T ss_pred cCCCeEEEEEeHHHhhcChHHHHHHHHHHHhCCEEEeehhhhHHHHHHHHHHHHHHH--ccCCEEEEEcCHHHHHHHhcc
Confidence 457777665554443 22222212111 4789999999999999999999998765 566666666774444333332
Q ss_pred HhhCcEEEEeCCCccCCCCchhHHHHHHHHHH
Q 014746 270 LHEADGIILARGNLGVDLPPEKVFLFQKAALY 301 (419)
Q Consensus 270 ~~~sDgImIargDLg~elg~e~v~~~qk~Ii~ 301 (419)
|++.+.=+-...+..-|++..
T Consensus 105 -----------G~f~m~~~~~g~~~~lKkl~~ 125 (164)
T PF11965_consen 105 -----------GKFSMGGEKSGPPALLKKLRG 125 (164)
T ss_pred -----------cceecCCCCcchHHHHHHHHh
Confidence 333343333445555555543
No 402
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=33.71 E-value=1.9e+02 Score=29.34 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=49.3
Q ss_pred CCeEEEEecCCCCC----C--------------HHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEE
Q 014746 28 AMTKIVGTLGPRSR----S--------------VEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAV 89 (419)
Q Consensus 28 ~~tkIi~TiGp~~~----~--------------~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~I 89 (419)
|++-+..|+||-.. + .|.++.|++.|+|++-|--... ..+.+..+..+|+..++.|..++|
T Consensus 113 k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D-~l~~KaA~~a~~~~~~~~~~~LPv 191 (311)
T COG0646 113 KPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFD-TLNAKAAVFAAREVFEELGVRLPV 191 (311)
T ss_pred CceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhcc-HHHHHHHHHHHHHHHHhcCCcccE
Confidence 57889999999663 2 3678889999999999876654 455778888899998888876666
Q ss_pred EE
Q 014746 90 ML 91 (419)
Q Consensus 90 l~ 91 (419)
|+
T Consensus 192 ~~ 193 (311)
T COG0646 192 MI 193 (311)
T ss_pred EE
Confidence 64
No 403
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=33.69 E-value=4.5e+02 Score=27.60 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=38.1
Q ss_pred HcCCceEEecccccCCCCHHHHHHHHHHHHHHHhcCCcChHHHHHHHHHHHHHCCCCCCCCEEEEEeecCCccEEEE
Q 014746 338 LDGSDAILLGAETLRGLYPVETISIVGKICAEAKTTNATSESALKVALDYGKAHGVIKSHDRVVICQKVGDSAVVKI 414 (419)
Q Consensus 338 ~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE~~~~~~~~~~~~a~~~~~~~~~~~~gd~vv~~~g~g~tn~~~i 414 (419)
...+|.+++..+.+.+.-|.+..+.+.+ .......+ .+.|++++++ .+++||. |+++|.|+.+...+
T Consensus 374 ~~~~d~vi~~~~~~~~~~~~~i~~~~~~---~~~~~~~d----~~~Ai~~~~~--~~~~gDv-VLv~G~G~e~~~~~ 440 (460)
T PRK00139 374 ERLADVVIVTSDNPRSEDPAAIIADILA---GIYDVIED----RAEAIRYAIA--QAKPGDV-VLIAGKGHEDYQII 440 (460)
T ss_pred HHcCCEEEEECCCCCCCCHHHHHHHHHh---CCCcccCC----HHHHHHHHHH--hcCCCCE-EEEEEccCcccEEE
Confidence 3458999998777777666443333221 00001134 4445555544 3578995 56899987766644
No 404
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=33.64 E-value=4.8e+02 Score=26.53 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=63.0
Q ss_pred CCcEEEEec----------CCCHHHHHHHHHHHHhcC----CCCCceEEEEecCHHhHhhHHHHHhh-----CcEEEEeC
Q 014746 220 NIDFLSLSH----------TRGAEDVRHARDFLSQLG----DLGQTQIFAKIENTEGLTHFDEILHE-----ADGIILAR 280 (419)
Q Consensus 220 g~d~I~lsf----------V~saedv~~v~~~l~~~~----~~~~~~IiaKIEt~~gv~nl~eI~~~-----sDgImIar 280 (419)
.+|++-+.+ -+.++.+.++-+.+.+.- ....+.|++|+=---.-+++.+++++ +|||.+.-
T Consensus 166 ~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~N 245 (335)
T TIGR01036 166 LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATN 245 (335)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEEC
Confidence 489987743 233444555444433221 00237899999533222345555543 48887521
Q ss_pred ----CC-c-----cCCCC-c---hhHHHHHHHHHHHHHHc--CCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCce
Q 014746 281 ----GN-L-----GVDLP-P---EKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDA 343 (419)
Q Consensus 281 ----gD-L-----g~elg-~---e~v~~~qk~Ii~a~~~~--gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~ 343 (419)
.+ + +...| + .-.+.+.+.+-...+.. ..|+|- ..+. ...|+..++..|||+
T Consensus 246 T~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~------------~~~da~e~l~aGA~~ 313 (335)
T TIGR01036 246 TTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGIS------------SAQDALEKIRAGASL 313 (335)
T ss_pred CCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCCcH
Confidence 01 0 11121 1 23344444444444444 367776 5533 356889999999999
Q ss_pred EEeccc
Q 014746 344 ILLGAE 349 (419)
Q Consensus 344 vmLs~E 349 (419)
|.+...
T Consensus 314 Vqv~ta 319 (335)
T TIGR01036 314 LQIYSG 319 (335)
T ss_pred HHhhHH
Confidence 999733
No 405
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=33.52 E-value=5.1e+02 Score=26.55 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 014746 232 AEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAV 311 (419)
Q Consensus 232 aedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi 311 (419)
.+.++.++++..+.| +.+++-+-+++.++-+.+ .+|.+-||-.++. +..+++++.+.||||+
T Consensus 143 ~~gL~~L~~~~~~~G----l~v~tev~d~~~~~~l~~---~vd~lqIgAr~~~-----------N~~LL~~va~~~kPVi 204 (335)
T PRK08673 143 EEGLKLLAEAREETG----LPIVTEVMDPRDVELVAE---YVDILQIGARNMQ-----------NFDLLKEVGKTNKPVL 204 (335)
T ss_pred HHHHHHHHHHHHHcC----CcEEEeeCCHHHHHHHHH---hCCeEEECccccc-----------CHHHHHHHHcCCCcEE
Confidence 455666666666544 788888888777766654 4799999876643 2446677778999999
Q ss_pred E-EccccccccCCCcchhhHhHHHHHHH-cCCceEEeccc-c-cCCCCHHHHHHHHH
Q 014746 312 V-TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILLGAE-T-LRGLYPVETISIVG 364 (419)
Q Consensus 312 ~-TqmLeSM~~~~~PtraEv~Dv~nav~-~G~D~vmLs~E-T-a~G~yP~eaV~~~~ 364 (419)
+ +.|. .|-.|+-..+..+. .|.+-++|..= + ..-.||-+.+.+-.
T Consensus 205 Lk~G~~--------~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~a 253 (335)
T PRK08673 205 LKRGMS--------ATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSA 253 (335)
T ss_pred EeCCCC--------CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHH
Confidence 8 6543 35557766676664 57766666521 3 34367766665433
No 406
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=33.28 E-value=4.9e+02 Score=25.78 Aligned_cols=149 Identities=14% Similarity=0.074 Sum_probs=81.2
Q ss_pred CccCHHHHHHHhhhcC-----CcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEE-ecCHHhHhhHHHHHhh-CcEE-
Q 014746 205 TDKDKEVISTWGARNN-----IDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAK-IENTEGLTHFDEILHE-ADGI- 276 (419)
Q Consensus 205 te~D~~di~~~~l~~g-----~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaK-IEt~~gv~nl~eI~~~-sDgI- 276 (419)
+..++..|.+...+.| ++.|=++ .-+.+|..++++.+.. +. ....+.+- .=+.++++ ..+++ .|.+
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~-s~~~~d~~~v~~~~~~-~~-~~~~v~~~~r~~~~die---~A~~~g~~~v~ 92 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFF-LYTEKDREAVEACLDR-GY-KFPEVTGWIRANKEDLK---LVKEMGLKETG 92 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEec-CcChHHHHHHHHHHHc-CC-CCCEEEEEecCCHHHHH---HHHHcCcCEEE
Confidence 4444555445668899 9987553 3355889999988853 21 12333332 22334443 33333 3543
Q ss_pred -EEeCCCccCC----CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhh--------HhHHHH-HHHcCC
Q 014746 277 -ILARGNLGVD----LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAE--------ATDVAN-AVLDGS 341 (419)
Q Consensus 277 -mIargDLg~e----lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraE--------v~Dv~n-av~~G~ 341 (419)
++.-.|+-.. ...++.....+.++..|+.+|+.+-+ -+ -++|++ +..++. +...|+
T Consensus 93 i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e---------d~~r~d~~~~v~~~~~~~~~~~~~~G~ 163 (279)
T cd07947 93 ILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLE---------DITRADIYGFVLPFVNKLMKLSKESGI 163 (279)
T ss_pred EEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE---------cccCCCcccchHHHHHHHHHHHHHCCC
Confidence 3333333222 12245666667899999999988766 32 233332 223332 222699
Q ss_pred ce-EEecccccC-------CCCHHHHHHHHHHHHHH
Q 014746 342 DA-ILLGAETLR-------GLYPVETISIVGKICAE 369 (419)
Q Consensus 342 D~-vmLs~ETa~-------G~yP~eaV~~~~~I~~~ 369 (419)
|+ +-|. +|.= +.||.+.-+++..+.++
T Consensus 164 ~~~i~l~-DTvG~a~P~~~~~~p~~v~~l~~~l~~~ 198 (279)
T cd07947 164 PVKIRLC-DTLGYGVPYPGASLPRSVPKIIYGLRKD 198 (279)
T ss_pred CEEEEec-cCCCcCCccccccchHHHHHHHHHHHHh
Confidence 95 6565 5544 34566676777766554
No 407
>PRK15452 putative protease; Provisional
Probab=33.28 E-value=81 Score=33.57 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=37.3
Q ss_pred CHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHh
Q 014746 42 SVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKS 82 (419)
Q Consensus 42 ~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~ 82 (419)
-.+.|.+|+++|++.|||.+-.-++++-.+++...|++...
T Consensus 270 ~i~~l~~L~~aGV~s~KIEgR~ks~~yv~~vv~~YR~ald~ 310 (443)
T PRK15452 270 AIQHVERLTKMGVHSLKIEGRTKSFYYVARTAQVYRKAIDD 310 (443)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999998754
No 408
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=33.11 E-value=1.7e+02 Score=28.15 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=37.5
Q ss_pred CHHHHHHHhhhcCCcEEEEecCCC--HHHHHHHHHHHHhcCCCCCceEEE--EecCHHhHhhHHHHHhh-CcEEEEeCC
Q 014746 208 DKEVISTWGARNNIDFLSLSHTRG--AEDVRHARDFLSQLGDLGQTQIFA--KIENTEGLTHFDEILHE-ADGIILARG 281 (419)
Q Consensus 208 D~~di~~~~l~~g~d~I~lsfV~s--aedv~~v~~~l~~~~~~~~~~Iia--KIEt~~gv~nl~eI~~~-sDgImIarg 281 (419)
|...+.+.+.+.|+|+|.++--.. ..|...+++.- .++.||+ -|.|.+-.. +.+.. +|+||+||+
T Consensus 153 ~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~------~~ipVIgnGgI~s~eda~---~~l~~GaD~VmiGR~ 222 (233)
T cd02911 153 DDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS------TELFIIGNNSVTTIESAK---EMFSYGADMVSVARA 222 (233)
T ss_pred CHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc------CCCEEEEECCcCCHHHHH---HHHHcCCCEEEEcCC
Confidence 344444466789999887653222 23454444431 2356665 355554433 33333 899999999
No 409
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=32.98 E-value=71 Score=26.88 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=27.7
Q ss_pred CcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcEE
Q 014746 135 FSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAIL 185 (419)
Q Consensus 135 ~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~l 185 (419)
+.++.+.+++||+|..- |=|..+| .+++++.++.+.-.+..+
T Consensus 37 ~~~ml~sL~kGD~VvT~-----gGi~G~V----~~v~d~~v~I~l~~~~~i 78 (97)
T COG1862 37 HQELLNSLKKGDEVVTI-----GGIVGTV----TKVGDDTVEIELGDGTKI 78 (97)
T ss_pred HHHHHHhccCCCEEEEc-----CCeEEEE----EEEecCcEEEEECCCeEE
Confidence 35788999999999998 5566677 444556655444333443
No 410
>PRK08185 hypothetical protein; Provisional
Probab=32.90 E-value=1.4e+02 Score=29.86 Aligned_cols=57 Identities=11% Similarity=0.013 Sum_probs=45.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCce
Q 014746 30 TKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLC 87 (419)
Q Consensus 30 tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i 87 (419)
..+..-+ .-+.+.+.+++.+++|.+.+=|.-||-+.++..+.-..+.+.++.+|.++
T Consensus 69 vPV~lHL-DHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 69 VPFVIHL-DHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred CCEEEEC-CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3455555 33457899999999999999999999999988888888888888777555
No 411
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=32.74 E-value=2.1e+02 Score=23.71 Aligned_cols=70 Identities=19% Similarity=0.294 Sum_probs=43.6
Q ss_pred CcEEeeCCCEEEEeeCCC-CCCCcCeEeccCcccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCC-eEEEEEEeCc
Q 014746 106 HPISLLADESVVLTPDQD-KEATSNLLPINFSGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGE-DVVCQIKNSA 183 (419)
Q Consensus 106 ~~i~l~~G~~v~lt~~~~-~~~~~~~i~v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~-~i~~~v~~gG 183 (419)
+.+.+.+|+.+.|.+... ........+++. ....+....++.++ .||.+.+.= ++ .-+.+ ...|.+.+..
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~--~~~~i~~~~Ri~~~---~~GnL~fs~-v~--~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNS--DLLHITQDERVSMG---QNGNLYFAN-VE--EQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECC--CCccccccccEEEC---CCceEEEEE-Ee--hhhCCCCeEEEEEccc
Confidence 468999999999998732 122233444532 22334557788886 269887763 33 32443 5889887654
No 412
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=32.64 E-value=77 Score=32.05 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCcEEEE---------cccccccc----CCCcchhhHhHHHHHHHcCCceEEecccccCCC--CHHHHHHH
Q 014746 298 AALYKCNMAGKPAVVT---------RVVDSMTD----NLRPTRAEATDVANAVLDGSDAILLGAETLRGL--YPVETISI 362 (419)
Q Consensus 298 ~Ii~a~~~~gkpvi~T---------qmLeSM~~----~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~--yP~eaV~~ 362 (419)
..+.+|+++|+||+-| +.++.|.+ ...|....+.+++.. .|.|+.+++-||..+. ..-.-+.+
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~--yGFDGw~iN~E~~~~~~~~~~~l~~F 123 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKY--YGFDGWLINIETPLSGPEDAENLIDF 123 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHH--HT--EEEEEEEESSTTGGGHHHHHHH
T ss_pred hhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHH--cCCCceEEEecccCCchhHHHHHHHH
Confidence 4679999999999522 24444444 334444444555544 6999999999999985 55555566
Q ss_pred HHHHHHHHhc
Q 014746 363 VGKICAEAKT 372 (419)
Q Consensus 363 ~~~I~~~aE~ 372 (419)
++.+-+++.+
T Consensus 124 ~~~l~~~~~~ 133 (311)
T PF03644_consen 124 LKYLRKEAHE 133 (311)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 6655555553
No 413
>PRK01362 putative translaldolase; Provisional
Probab=32.62 E-value=82 Score=30.17 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=14.3
Q ss_pred HhhhcCCcEEEEecCCCHHH
Q 014746 215 WGARNNIDFLSLSHTRGAED 234 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saed 234 (419)
.+...|++||+ |||...+|
T Consensus 117 ~Aa~aGa~yis-pyvgRi~d 135 (214)
T PRK01362 117 LAAKAGATYVS-PFVGRLDD 135 (214)
T ss_pred HHHhcCCcEEE-eecchHhh
Confidence 45678999766 88887765
No 414
>PRK12346 transaldolase A; Provisional
Probab=32.40 E-value=1.3e+02 Score=30.72 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=13.6
Q ss_pred HhhhcCCcEEEEecCCCHHH
Q 014746 215 WGARNNIDFLSLSHTRGAED 234 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saed 234 (419)
.+.+.|+++|. |||..-.|
T Consensus 165 ~aa~AGa~~IS-PfVgRi~d 183 (316)
T PRK12346 165 ACAEAGVFLIS-PFVGRIYD 183 (316)
T ss_pred HHHHcCCCEEE-ecccHHHH
Confidence 34677887665 88887766
No 415
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.30 E-value=2.4e+02 Score=28.55 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=44.4
Q ss_pred cccccccCCCCCCCCCCCeEEEEecCCCCCC---HHHHHHHHHcCCCEEEEeccCCC---HHHHHHHHHHHHHHHHhcCC
Q 014746 12 IRMASILEPSKPTFFPAMTKIVGTLGPRSRS---VEIISGCLNAGMSVARFDFSWGD---TAYHQETLENLKIAIKSTKK 85 (419)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~tkIi~TiGp~~~~---~~~i~~li~~Gm~v~RiN~SHg~---~e~~~~~i~~ir~a~~~~~~ 85 (419)
.++.++|+.... .+....+|.+..... .+..+++++.|.+.+.+.+.+|. .+...+-++.+|.+.+..|.
T Consensus 95 ~Pv~~LLGG~~r----~~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~ 170 (341)
T cd03327 95 EPVYKLLGGRTR----DKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGY 170 (341)
T ss_pred CCHHHHcCCCcC----CceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCC
Confidence 345555643211 245566664322211 24556788899999999885432 23334555556655555665
Q ss_pred ceEEEEecC
Q 014746 86 LCAVMLDTI 94 (419)
Q Consensus 86 ~i~Il~Dl~ 94 (419)
.+.+++|--
T Consensus 171 ~~~l~vDan 179 (341)
T cd03327 171 DVDLMLDCY 179 (341)
T ss_pred CCcEEEECC
Confidence 666777753
No 416
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=32.19 E-value=1e+02 Score=29.26 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHcCCCEEEEeccCCCHH----------HHHHHHHHHHHHHHhcCCceEEEEecCCC
Q 014746 41 RSVEIISGCLNAGMSVARFDFSWGDTA----------YHQETLENLKIAIKSTKKLCAVMLDTIGP 96 (419)
Q Consensus 41 ~~~~~i~~li~~Gm~v~RiN~SHg~~e----------~~~~~i~~ir~a~~~~~~~i~Il~Dl~GP 96 (419)
...+.++.|-..|+|..||-+...... ...+.++.+=+++++.| +.+++|+-++
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~g--i~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYG--IYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT---EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCC--CeEEEEeccC
Confidence 557789999999999999999973322 23333333333444455 5668888754
No 417
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=32.16 E-value=1.4e+02 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCEEEEeccCCCHHHH
Q 014746 45 IISGCLNAGMSVARFDFSWGDTAYH 69 (419)
Q Consensus 45 ~i~~li~~Gm~v~RiN~SHg~~e~~ 69 (419)
.++.|-+.|++|.|+|+++-.....
T Consensus 32 ~~~~Lk~~gv~v~RyNL~~~P~aF~ 56 (123)
T PF06953_consen 32 DLDWLKEQGVEVERYNLAQNPQAFV 56 (123)
T ss_dssp HHHHHHHTT-EEEEEETTT-TTHHH
T ss_pred HHHHHHhCCceEEEEccccCHHHHH
Confidence 5678899999999999999876543
No 418
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=32.06 E-value=2.6e+02 Score=27.23 Aligned_cols=71 Identities=24% Similarity=0.320 Sum_probs=43.2
Q ss_pred HhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 270 LHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 270 ~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
+..+|.+++|-|++-.+..-.+.+...-.++..|+..|||++. .|=+. |..++ .-...+..+...+|.+..
T Consensus 62 l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giG-----P~~~~-~~r~~~~~~l~~~~~i~v 133 (298)
T TIGR03609 62 LRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIG-----PLRRR-LSRWLVRRVLRGCRAISV 133 (298)
T ss_pred HHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccC-----CcCCH-HHHHHHHHHHccCCEEEE
Confidence 4457999999998877643223333444577888899999998 77332 22221 112234445556666655
No 419
>PRK10425 DNase TatD; Provisional
Probab=31.97 E-value=4.9e+02 Score=25.35 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=61.2
Q ss_pred cCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCC-----CCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCC
Q 014746 207 KDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGD-----LGQTQIFAKIENTEGLTHFDEILHEADGIILARG 281 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~-----~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIarg 281 (419)
.|.+.+.+.+.+.|+..++.+-+ ++++..++.++...... +-|+.- +.--+.+.++.+++++.... ++|=|
T Consensus 15 ~d~~~vl~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~~~v~~~~GiHP~~-~~~~~~~~~~~l~~~~~~~~--~vaIG 90 (258)
T PRK10425 15 KDRDDVVARAFAAGVNGMLITGT-NLRESQQAQKLARQYPSCWSTAGVHPHD-SSQWQAATEEAIIELAAQPE--VVAIG 90 (258)
T ss_pred ccHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhCCCEEEEEEeCcCc-cccCCHHHHHHHHHhccCCC--EEEEe
Confidence 35555545667889887777755 47777777776654320 011111 11112445666666664433 44557
Q ss_pred CccCCCCch-hHHHHH----HHHHHHHHHcCCcEEE-E
Q 014746 282 NLGVDLPPE-KVFLFQ----KAALYKCNMAGKPAVV-T 313 (419)
Q Consensus 282 DLg~elg~e-~v~~~q----k~Ii~a~~~~gkpvi~-T 313 (419)
..|.++... .....| ++.+..|.++++|+++ +
T Consensus 91 EiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 91 ECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHC 128 (258)
T ss_pred eeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 777776541 223445 5578889999999998 6
No 420
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=31.88 E-value=4.5e+02 Score=24.95 Aligned_cols=114 Identities=14% Similarity=0.033 Sum_probs=66.9
Q ss_pred hhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHH
Q 014746 217 ARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQ 296 (419)
Q Consensus 217 l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~q 296 (419)
+..|++.+.+|-=- ..++..+..+.+ |+..+.=-..+++.. ++-++++-+| +..-
T Consensus 32 l~~ga~v~Vvs~~~----~~el~~~~~~~~----------i~~~~~~~~~~~~~~-~~lviaAt~d----------~~ln 86 (210)
T COG1648 32 LKAGADVTVVSPEF----EPELKALIEEGK----------IKWIEREFDAEDLDD-AFLVIAATDD----------EELN 86 (210)
T ss_pred HhcCCEEEEEcCCc----cHHHHHHHHhcC----------cchhhcccChhhhcC-ceEEEEeCCC----------HHHH
Confidence 78899977776322 334444443321 222221122233332 7788888777 7888
Q ss_pred HHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHH
Q 014746 297 KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICA 368 (419)
Q Consensus 297 k~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~ 368 (419)
++|.++|+++++||-+ +++.+.+|+..--.-.-..+.++ =++-|+=|+-|-....+|-.
T Consensus 87 ~~i~~~a~~~~i~vNv------------~D~p~~~~f~~Pa~~~r~~l~ia-IsT~G~sP~la~~ir~~Ie~ 145 (210)
T COG1648 87 ERIAKAARERRILVNV------------VDDPELCDFIFPAIVDRGPLQIA-ISTGGKSPVLARLLREKIEA 145 (210)
T ss_pred HHHHHHHHHhCCceec------------cCCcccCceecceeeccCCeEEE-EECCCCChHHHHHHHHHHHH
Confidence 9999999999999986 22233334332222222234443 45689999988877777644
No 421
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=31.83 E-value=63 Score=33.43 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=35.9
Q ss_pred CHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecC
Q 014746 42 SVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTI 94 (419)
Q Consensus 42 ~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~ 94 (419)
+.+.|++|.++|+++.|+-.-. .+..+.+..|++.-.+.|.+++++.|+.
T Consensus 33 tv~QI~~L~~aGceivRvavp~---~~~a~al~~I~~~l~~~g~~iPlVADIH 82 (359)
T PF04551_consen 33 TVAQIKRLEEAGCEIVRVAVPD---MEAAEALKEIKKRLRALGSPIPLVADIH 82 (359)
T ss_dssp HHHHHHHHHHCT-SEEEEEE-S---HHHHHHHHHHHHHHHCTT-SS-EEEEES
T ss_pred HHHHHHHHHHcCCCEEEEcCCC---HHHHHHHHHHHHhhccCCCCCCeeeecC
Confidence 3568899999999999987654 3345667777776666788999999976
No 422
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.72 E-value=1.8e+02 Score=28.94 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=44.1
Q ss_pred CccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHh--HhhHHHHHhh-CcEEEEeC
Q 014746 205 TDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEG--LTHFDEILHE-ADGIILAR 280 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~g--v~nl~eI~~~-sDgImIar 280 (419)
+-.+.+.+. .+.+.|+|||++.. -++++++++++.+. ..+. +|-.-| .+|+.++++. +|+|-+|.
T Consensus 194 sv~tleea~-~A~~~gaDyI~lD~-~~~e~l~~~~~~~~-----~~i~----i~AiGGIt~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 194 ETETEEQVR-EAVAAGADIIMFDN-RTPDEIREFVKLVP-----SAIV----TEASGGITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EeCCHHHHH-HHHHcCCCEEEECC-CCHHHHHHHHHhcC-----CCce----EEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 334666775 56899999999975 67888888877652 2222 222222 4688888887 79998864
No 423
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=31.67 E-value=1.5e+02 Score=29.45 Aligned_cols=55 Identities=15% Similarity=0.008 Sum_probs=44.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCC
Q 014746 30 TKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKK 85 (419)
Q Consensus 30 tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~ 85 (419)
..++.-+ .-+.+.+.+++.+++|.+..=|..||-+.++..+....+++.++.+|.
T Consensus 75 vpv~lhl-DH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv 129 (282)
T TIGR01859 75 VPVALHL-DHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGV 129 (282)
T ss_pred CeEEEEC-CCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4455554 444579999999999999999999999999888888888888887664
No 424
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=31.66 E-value=5.2e+02 Score=25.56 Aligned_cols=93 Identities=11% Similarity=0.083 Sum_probs=50.5
Q ss_pred HHhhhcCCcEEEEec------CCCHHHHHHH-HHHHHhcCCCCCceEEEEec---CHHhHhhHHHHHhh-CcEEEEeCCC
Q 014746 214 TWGARNNIDFLSLSH------TRGAEDVRHA-RDFLSQLGDLGQTQIFAKIE---NTEGLTHFDEILHE-ADGIILARGN 282 (419)
Q Consensus 214 ~~~l~~g~d~I~lsf------V~saedv~~v-~~~l~~~~~~~~~~IiaKIE---t~~gv~nl~eI~~~-sDgImIargD 282 (419)
+|.++.|+++|++.= .=|.++=.++ +....... .++.|++-+- |.++++....-.+. +|++|+.+--
T Consensus 28 ~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~--g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~ 105 (294)
T TIGR02313 28 EFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA--GRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPY 105 (294)
T ss_pred HHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC--CCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 477888999887642 1233333333 33344444 5678888775 34555555554443 5898886643
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHc-CCcEEE
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNMA-GKPAVV 312 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~~-gkpvi~ 312 (419)
.-. ..- ..+....-..|.+. +.|+++
T Consensus 106 y~~-~~~---~~l~~~f~~ia~a~~~lpv~i 132 (294)
T TIGR02313 106 YNK-PNQ---EALYDHFAEVADAVPDFPIII 132 (294)
T ss_pred CCC-CCH---HHHHHHHHHHHHhccCCCEEE
Confidence 211 111 33334444445556 677775
No 425
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=31.62 E-value=1.5e+02 Score=30.24 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=32.5
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHH
Q 014746 28 AMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLE 74 (419)
Q Consensus 28 ~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~ 74 (419)
+++|+.+-+=|...+.+-++...++|++++|+-++-...+...+.++
T Consensus 76 ~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~ 122 (337)
T PRK08195 76 KQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIG 122 (337)
T ss_pred CCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHH
Confidence 46887765556666788899999999999999764333333333333
No 426
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=31.43 E-value=85 Score=26.82 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=32.7
Q ss_pred CCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCe
Q 014746 54 MSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTIGPE 97 (419)
Q Consensus 54 m~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPk 97 (419)
++.+||-+.-.++....+..+.|.+.++.+| .+++||-
T Consensus 3 ~~kirI~L~s~d~~~LD~~~~~Ive~akrtg------~~v~GPi 40 (104)
T COG0051 3 KQKIRIRLKSFDHRLLDQVCREIVETAKRTG------ADVKGPI 40 (104)
T ss_pred CceEEEEEecCCHHHHHHHHHHHHHHHHHhC------CeeeCCc
Confidence 4589999999999999999999999999888 5567774
No 427
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=31.41 E-value=5e+02 Score=25.61 Aligned_cols=89 Identities=13% Similarity=-0.011 Sum_probs=45.5
Q ss_pred CcEEEEe-CCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccc
Q 014746 273 ADGIILA-RGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (419)
Q Consensus 273 sDgImIa-rgDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ET 350 (419)
+|||+++ -.-=+..+..++-..+.+..++.+. ..+|++. +. ...|+.=+.-.-.|...|+|++|+..=.
T Consensus 36 v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~--------~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 36 VDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVG--------SVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred cCEEEECCcccccccCCHHHHHHHHHHHHHHhC-CCCcEEEecC--------CCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 5777663 1112233344444444444444432 2367766 32 1123322333345567788888885433
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 014746 351 LRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 351 a~G~yP~eaV~~~~~I~~~a 370 (419)
-...-+-+.+.+.+.++..+
T Consensus 107 y~~~~~~~i~~yf~~v~~~~ 126 (290)
T TIGR00683 107 YYKFSFPEIKHYYDTIIAET 126 (290)
T ss_pred CCCCCHHHHHHHHHHHHhhC
Confidence 33333567777777777765
No 428
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.39 E-value=67 Score=27.34 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=20.8
Q ss_pred ccCcccchhcCCCCEEEeeccccCCceEEEE
Q 014746 133 INFSGLSKAVKKGDTIFIGQYLFTGNETTSV 163 (419)
Q Consensus 133 v~~~~l~~~v~~Gd~I~id~~~~DG~i~l~V 163 (419)
++++. ...++|||+|.++ .+++..+|
T Consensus 26 l~d~k-rr~ik~GD~IiF~----~~~l~v~V 51 (111)
T COG4043 26 LADPK-RRQIKPGDKIIFN----GDKLKVEV 51 (111)
T ss_pred ecCHh-hcCCCCCCEEEEc----CCeeEEEE
Confidence 45554 3679999999999 89888777
No 429
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=31.21 E-value=1.7e+02 Score=26.66 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=36.2
Q ss_pred CHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCc
Q 014746 42 SVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKL 86 (419)
Q Consensus 42 ~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~ 86 (419)
-.+.+.+++++|++.+-|..-..+.++..+.++.+++..++++.+
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~ 58 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVP 58 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGC
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEE
Confidence 356788999999999999999999999999999999998876543
No 430
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=31.12 E-value=2.1e+02 Score=26.63 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=57.6
Q ss_pred CcchhhHhHHHHHHHcCCceEEeccccc---CCCCHHHHHHHHHHHHHHHhcCC--------cChHHHHHHHHHHHHHCC
Q 014746 324 RPTRAEATDVANAVLDGSDAILLGAETL---RGLYPVETISIVGKICAEAKTTN--------ATSESALKVALDYGKAHG 392 (419)
Q Consensus 324 ~PtraEv~Dv~nav~~G~D~vmLs~ETa---~G~yP~eaV~~~~~I~~~aE~~~--------~~~~~~~~~a~~~~~~~~ 392 (419)
.++..-+..+-.|+.+|+|.+-..--.. .|.| -+..+.+..+++.+...+ .-.++.+..|.+.+.+.|
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~-~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~G 144 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDY-EAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAG 144 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 5566667889999999999987743322 2333 567778888888776421 223678999999999999
Q ss_pred CCCCCCEEEEEeec
Q 014746 393 VIKSHDRVVICQKV 406 (419)
Q Consensus 393 ~~~~gd~vv~~~g~ 406 (419)
- |.|-..+||
T Consensus 145 a----D~IKTsTG~ 154 (203)
T cd00959 145 A----DFIKTSTGF 154 (203)
T ss_pred C----CEEEcCCCC
Confidence 8 888877888
No 431
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=30.95 E-value=2.3e+02 Score=29.90 Aligned_cols=72 Identities=28% Similarity=0.337 Sum_probs=47.0
Q ss_pred HhhHHHHHhhCcEEEEeCCCccCC-CCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchh-hHhHHHHHHHc
Q 014746 263 LTHFDEILHEADGIILARGNLGVD-LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRA-EATDVANAVLD 339 (419)
Q Consensus 263 v~nl~eI~~~sDgImIargDLg~e-lg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~Ptra-Ev~Dv~nav~~ 339 (419)
..++...++.+|.++-+-||+=.+ +|...+.+ +..|+..|||+++ .| +.-|=+. +-...+..+..
T Consensus 108 ~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y-----~l~A~l~gkpv~l~gq-------siGPf~~~~~r~l~r~vl~ 175 (426)
T PRK10017 108 FTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEH-----ALCAFMAKKPLYMIGH-------SVGPFQDEQFNQLANYVFG 175 (426)
T ss_pred HHHHHHHHHhCCEEEECCCCccccCcccHHHHH-----HHHHHHcCCCEEEECC-------cCCCcCCHHHHHHHHHHHh
Confidence 345555677799999999999887 46544433 2467889999999 88 3333322 23445666666
Q ss_pred CCceEEe
Q 014746 340 GSDAILL 346 (419)
Q Consensus 340 G~D~vmL 346 (419)
.+|.+.+
T Consensus 176 ~~~~Itv 182 (426)
T PRK10017 176 HCDALIL 182 (426)
T ss_pred cCCEEEE
Confidence 6666655
No 432
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=30.94 E-value=1.2e+02 Score=28.75 Aligned_cols=83 Identities=10% Similarity=0.108 Sum_probs=48.5
Q ss_pred EeeCCCEEEEeeCCCC----CCCcCeEeccCcccc--hhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeC
Q 014746 109 SLLADESVVLTPDQDK----EATSNLLPINFSGLS--KAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNS 182 (419)
Q Consensus 109 ~l~~G~~v~lt~~~~~----~~~~~~i~v~~~~l~--~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~g 182 (419)
-.+.|++++++..... -..+....++-..|. ..+++|++++.+ ..+|.+.++| .+++++.|+ |--+
T Consensus 51 G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~--~~~G~~~~~V----~ev~~d~V~--vD~N 122 (196)
T PRK10737 51 GHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAE--TDQGPVPVEI----TAVEDDHVV--VDGN 122 (196)
T ss_pred CCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEe--CCCCcEEEEE----EEEcCCEEE--EECC
Confidence 3578888888765321 112224455545553 358999999875 2378777777 555666643 4455
Q ss_pred cEEecCCcceeecCceecC
Q 014746 183 AILARQLYTLHVSQIRIDL 201 (419)
Q Consensus 183 G~l~~~~Kgvnlp~~~~~l 201 (419)
..| ..|.++|--.-+++
T Consensus 123 HPL--AG~~L~F~veV~~v 139 (196)
T PRK10737 123 HML--AGQNLKFNVEVVAI 139 (196)
T ss_pred CcC--CCCEEEEEEEEEEe
Confidence 555 45666664443444
No 433
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=30.93 E-value=67 Score=35.46 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=40.3
Q ss_pred CHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecC
Q 014746 42 SVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTI 94 (419)
Q Consensus 42 ~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~ 94 (419)
+.+.+++|.++|+++.|+-.- + .+..+.+.+||+.....|.+++++.|+.
T Consensus 43 tv~Qi~~l~~aGceiVRvtv~--~-~~~a~~l~~I~~~l~~~G~~iPLVADIH 92 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVRLTTQ--G-VREAENLMNINIGLRSQGYMVPLVADVH 92 (611)
T ss_pred HHHHHHHHHHcCCCEEEEcCC--C-HHHHHhHHHHHHHHhhcCCCCCEEEecC
Confidence 477899999999999997643 2 3445678888888777889999999987
No 434
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.92 E-value=4.6e+02 Score=24.71 Aligned_cols=128 Identities=13% Similarity=0.183 Sum_probs=64.6
Q ss_pred cCHHHHHHHhhhcCCcEEEEec--CCCHHHHHHHHHHHHhcCCCCCceEEEEecCH---------------HhHhhHHHH
Q 014746 207 KDKEVISTWGARNNIDFLSLSH--TRGAEDVRHARDFLSQLGDLGQTQIFAKIENT---------------EGLTHFDEI 269 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsf--V~saedv~~v~~~l~~~~~~~~~~IiaKIEt~---------------~gv~nl~eI 269 (419)
.+.++++ .+++.|+|.|.+.- .++++-+.++.+.+ + .+ .|++-|... .-++-+..+
T Consensus 86 ~~~~~~~-~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~---g--~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~ 158 (241)
T PRK13585 86 RSAEDAA-SLLDLGVDRVILGTAAVENPEIVRELSEEF---G--SE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRF 158 (241)
T ss_pred CCHHHHH-HHHHcCCCEEEEChHHhhChHHHHHHHHHh---C--CC-cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHH
Confidence 4567776 56899999988764 22333444444333 2 11 233333211 112222222
Q ss_pred Hhh-CcEEEEeCCCc-cCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 270 LHE-ADGIILARGNL-GVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 270 ~~~-sDgImIargDL-g~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
... +|.+.+---+- +..-| ..+. .+-+.++....|++. .. .-+.. |+......|+|++++
T Consensus 159 ~~~G~~~i~~~~~~~~g~~~g-~~~~----~i~~i~~~~~iPvia~GG---------I~~~~---di~~~~~~Ga~gv~v 221 (241)
T PRK13585 159 EELGAGSILFTNVDVEGLLEG-VNTE----PVKELVDSVDIPVIASGG---------VTTLD---DLRALKEAGAAGVVV 221 (241)
T ss_pred HHcCCCEEEEEeecCCCCcCC-CCHH----HHHHHHHhCCCCEEEeCC---------CCCHH---HHHHHHHcCCCEEEE
Confidence 222 47777632111 11112 1121 233345556899998 54 33344 444456679999999
Q ss_pred cccccCCCCHHH
Q 014746 347 GAETLRGLYPVE 358 (419)
Q Consensus 347 s~ETa~G~yP~e 358 (419)
..---.|.++++
T Consensus 222 gsa~~~~~~~~~ 233 (241)
T PRK13585 222 GSALYKGKFTLE 233 (241)
T ss_pred EHHHhcCCcCHH
Confidence 866666666543
No 435
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=30.82 E-value=3.4e+02 Score=28.26 Aligned_cols=86 Identities=26% Similarity=0.269 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh----CcEEEE----eCCCccCCCCchhHHHHHHHHHHH
Q 014746 231 GAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE----ADGIIL----ARGNLGVDLPPEKVFLFQKAALYK 302 (419)
Q Consensus 231 saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~----sDgImI----argDLg~elg~e~v~~~qk~Ii~a 302 (419)
+-+|+..+|+. .+.+||.| +|.+.++...+ +|+|.+ ||. ....+.....+...
T Consensus 212 tW~di~wlr~~-------~~~PiivK-----gV~~~~dA~~a~~~Gvd~I~VsnhGGrq-------ld~~~~t~~~L~ei 272 (367)
T PLN02493 212 SWKDVQWLQTI-------TKLPILVK-----GVLTGEDARIAIQAGAAGIIVSNHGARQ-------LDYVPATISALEEV 272 (367)
T ss_pred CHHHHHHHHhc-------cCCCEEee-----cCCCHHHHHHHHHcCCCEEEECCCCCCC-------CCCchhHHHHHHHH
Q ss_pred HHHcC--CcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEec
Q 014746 303 CNMAG--KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (419)
Q Consensus 303 ~~~~g--kpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs 347 (419)
..+.+ +|+|. ..+= .-+|++-|+..|+|++++.
T Consensus 273 ~~av~~~~~vi~dGGIr------------~G~Dv~KALALGA~aV~iG 308 (367)
T PLN02493 273 VKATQGRIPVFLDGGVR------------RGTDVFKALALGASGIFIG 308 (367)
T ss_pred HHHhCCCCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
No 436
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=30.78 E-value=1.4e+02 Score=29.98 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred ecCCCCCccCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEE
Q 014746 199 IDLPTLTDKDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIIL 278 (419)
Q Consensus 199 ~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImI 278 (419)
+.+|+..-...+.|...+....+-.|==.+--+++|...+.+++...| -+.|+-+--|+.+
T Consensus 110 lQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~G-------------------N~~viLcERG~tF 170 (290)
T PLN03033 110 IQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAG-------------------NPNVMVCERGTMF 170 (290)
T ss_pred EeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcC-------------------CCcEEEEeCCCCc
Q ss_pred eCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE--Ecc--------ccccccCCCcchhhHhHHH-HHHHcCCceEEe
Q 014746 279 ARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV--TRV--------VDSMTDNLRPTRAEATDVA-NAVLDGSDAILL 346 (419)
Q Consensus 279 argDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~--Tqm--------LeSM~~~~~PtraEv~Dv~-nav~~G~D~vmL 346 (419)
+...|.+++. .+|.+ +..+.|||+ |+- |+..-....-.|.-+..++ .|+..|+|++|+
T Consensus 171 gy~~lv~D~r--~ip~m--------k~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfi 239 (290)
T PLN03033 171 GYNDLIVDPR--NLEWM--------REANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFM 239 (290)
T ss_pred CCCCcccchh--hhHHH--------HhcCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEE
No 437
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=30.74 E-value=2e+02 Score=29.56 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=59.1
Q ss_pred HHHHHHHhhhcCCcEEEEecC---------CCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh----CcE
Q 014746 209 KEVISTWGARNNIDFLSLSHT---------RGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE----ADG 275 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV---------~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~----sDg 275 (419)
.+|.+ .+.+.|+|+|.+|-- .+.+-+.++++.+.+.+ .++.||+ --||.|=.+|+++ +|+
T Consensus 224 ~~dA~-~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~--~~~~vi~----~GGIr~G~Dv~kalaLGA~a 296 (344)
T cd02922 224 VEDAV-LAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVF--DKIEVYV----DGGVRRGTDVLKALCLGAKA 296 (344)
T ss_pred HHHHH-HHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhC--CCceEEE----eCCCCCHHHHHHHHHcCCCE
Confidence 55665 668999999999862 33444556666554444 4566665 4677777777665 799
Q ss_pred EEEeCCCccCCC--Cch----hHHHHHHHHHHHHHHcCCc
Q 014746 276 IILARGNLGVDL--PPE----KVFLFQKAALYKCNMAGKP 309 (419)
Q Consensus 276 ImIargDLg~el--g~e----~v~~~qk~Ii~a~~~~gkp 309 (419)
+.|||.=|-.-. |.+ .+..+++++-......|..
T Consensus 297 V~iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 297 VGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred EEECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987655332 333 3334445566666666654
No 438
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=30.49 E-value=5.1e+02 Score=27.77 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=75.8
Q ss_pred ccCHHHHHHHhhhcCCcE--EEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhC-----cEEEE
Q 014746 206 DKDKEVISTWGARNNIDF--LSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEA-----DGIIL 278 (419)
Q Consensus 206 e~D~~di~~~~l~~g~d~--I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~s-----DgImI 278 (419)
..|.+.++ .|++.|+|. +..|. +.+...++-+...+.+ ..++++=.. ++.+.+++... .=+++
T Consensus 162 T~dpevle-aAleagad~~plI~Sa--t~dN~~~m~~la~~yg----~pvVv~~~d---l~~L~~lv~~~~~~GI~dIIL 231 (450)
T PRK04165 162 SEDPAVLK-AALEVVADRKPLLYAA--TKENYEEMAELAKEYN----CPLVVKAPN---LEELKELVEKLQAAGIKDLVL 231 (450)
T ss_pred CCCHHHHH-HHHHhcCCCCceEEec--CcchHHHHHHHHHHcC----CcEEEEchh---HHHHHHHHHHHHHcCCCcEEE
Confidence 37888886 889999884 33342 2355666666565544 344443332 55555555532 23444
Q ss_pred eCCCccCCCCchhHHHHHHHHH-HHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCH
Q 014746 279 ARGNLGVDLPPEKVFLFQKAAL-YKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYP 356 (419)
Q Consensus 279 argDLg~elg~e~v~~~qk~Ii-~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP 356 (419)
.+|=-+..-.+++...+++.-+ ..=+..|-|+++ +- =.+| +-..-|+.-.+.++..|+|.++|+.=..---+|
T Consensus 232 DPg~ggf~ksl~~~~~iRr~Al~~~~~~lgyPil~~~s-~k~~----~~~~~E~~~As~~~~kya~i~Vl~~~~~~~~~p 306 (450)
T PRK04165 232 DPGTENIKETLDDFVQIRRAAIKKGDRPLGYPIIAFPI-EAWM----SDPMKEAAIASTLIAKYADILVLHDIEPWELLP 306 (450)
T ss_pred CCCCchhhhhHHHHHHHHhhhhhcccccCCCCEEEcch-hhcc----cchHHHHHHHHHHHHhCCcEEEEcCCCHHHHhh
Confidence 4432222222233333222222 334677999987 32 0111 223346666778888999999998655555555
Q ss_pred HHH
Q 014746 357 VET 359 (419)
Q Consensus 357 ~ea 359 (419)
+-+
T Consensus 307 ~~~ 309 (450)
T PRK04165 307 LLT 309 (450)
T ss_pred HHH
Confidence 443
No 439
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.30 E-value=1.4e+02 Score=25.39 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=25.8
Q ss_pred HHhhhcCCcEEEEecCC--CHHHHHHHHHHHHhcCCCCCceEEE
Q 014746 214 TWGARNNIDFLSLSHTR--GAEDVRHARDFLSQLGDLGQTQIFA 255 (419)
Q Consensus 214 ~~~l~~g~d~I~lsfV~--saedv~~v~~~l~~~~~~~~~~Iia 255 (419)
..+.+.++|+|++|+.. +.+.+.++.+.|++.+. .++.+++
T Consensus 44 ~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~-~~i~i~~ 86 (122)
T cd02071 44 EAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGA-GDILVVG 86 (122)
T ss_pred HHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 36678899999999864 45555565566665542 2444443
No 440
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=30.19 E-value=1.2e+02 Score=29.33 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=33.8
Q ss_pred hhHHHHHhhC--cEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCC
Q 014746 264 THFDEILHEA--DGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGS 341 (419)
Q Consensus 264 ~nl~eI~~~s--DgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~ 341 (419)
+.+++++..+ |+||||--| ++. +.+....+.+ ++.+. .+|++. .|... +.+..|+
T Consensus 15 ~~~~~~~~~~gtdai~vGGS~-~v~---~~~~~~~~~i-k~~~~-~~Pvil-----------fp~~~------~~i~~~a 71 (219)
T cd02812 15 EEIAKLAEESGTDAIMVGGSD-GVS---STLDNVVRLI-KRIRR-PVPVIL-----------FPSNP------EAVSPGA 71 (219)
T ss_pred HHHHHHHHhcCCCEEEECCcc-chh---hhHHHHHHHH-HHhcC-CCCEEE-----------eCCCc------cccCcCC
Confidence 4466777754 999998433 333 2222222222 22222 699986 34432 3345789
Q ss_pred ceEEec
Q 014746 342 DAILLG 347 (419)
Q Consensus 342 D~vmLs 347 (419)
|++++.
T Consensus 72 Da~l~~ 77 (219)
T cd02812 72 DAYLFP 77 (219)
T ss_pred CEEEEE
Confidence 998774
No 441
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.17 E-value=5.7e+02 Score=25.55 Aligned_cols=146 Identities=15% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-
Q 014746 235 VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV- 312 (419)
Q Consensus 235 v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~- 312 (419)
...++.+..+.. +++....-...-++.+..=++. .+-||+. |-++|+++=-..-++++..|+..|..|=.
T Consensus 63 ~~~~~~~A~~~~----VPValHLDH~~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaE 134 (284)
T PRK12857 63 SAMVRTAAEKAS----VPVALHLDHGTDFEQVMKCIRNGFTSVMID----GSKLPLEENIALTKKVVEIAHAVGVSVEAE 134 (284)
T ss_pred HHHHHHHHHHCC----CCEEEECCCCCCHHHHHHHHHcCCCeEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Q ss_pred Eccc-----cccccCCCcchhhHhHHHHHHHc-CCceEEecccccCCCC---HHHHHHHHHHHHHHHhc------CCcCh
Q 014746 313 TRVV-----DSMTDNLRPTRAEATDVANAVLD-GSDAILLGAETLRGLY---PVETISIVGKICAEAKT------TNATS 377 (419)
Q Consensus 313 TqmL-----eSM~~~~~PtraEv~Dv~nav~~-G~D~vmLs~ETa~G~y---P~eaV~~~~~I~~~aE~------~~~~~ 377 (419)
=..+ .+......-.-....++..|+.. |+|++-.|--|+=|.| |---.+.+.+|.+...- .+.-+
T Consensus 135 lG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~ 214 (284)
T PRK12857 135 LGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVP 214 (284)
T ss_pred eeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCC
Q ss_pred HHHHHHHHHHH
Q 014746 378 ESALKVALDYG 388 (419)
Q Consensus 378 ~~~~~~a~~~~ 388 (419)
++.++.|++..
T Consensus 215 ~e~~~~ai~~G 225 (284)
T PRK12857 215 DEAIRKAISLG 225 (284)
T ss_pred HHHHHHHHHcC
No 442
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=29.84 E-value=8e+02 Score=27.19 Aligned_cols=149 Identities=17% Similarity=0.059 Sum_probs=87.0
Q ss_pred CCCccCHHHHHHHhhhcCCcEEEE----------ecCCCHHHHHHHHHHHHhcCCCCCceEEEEec--CHH--------h
Q 014746 203 TLTDKDKEVISTWGARNNIDFLSL----------SHTRGAEDVRHARDFLSQLGDLGQTQIFAKIE--NTE--------G 262 (419)
Q Consensus 203 ~lte~D~~di~~~~l~~g~d~I~l----------sfV~saedv~~v~~~l~~~~~~~~~~IiaKIE--t~~--------g 262 (419)
.++..|...|....-+.|++.+=+ +|. +.++-+.+|.+- +.. .++.+...+= +.- .
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~-~e~p~e~lr~l~-~~~--~~~~lqml~Rg~n~vg~~~ypddv 98 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFL-GEDPWERLRELK-KAM--PNTPQQMLLRGQNLLGYRHYADDV 98 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhcccc-CCCHHHHHHHHH-HhC--CCCeEEEEecCcceeccccCcHHH
Confidence 467777777764444578887644 333 223444444433 222 3444443331 112 2
Q ss_pred HhhHHHHHhh--CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcE---EE-EccccccccCCCcchhhHhHHHH-
Q 014746 263 LTHFDEILHE--ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPA---VV-TRVVDSMTDNLRPTRAEATDVAN- 335 (419)
Q Consensus 263 v~nl~eI~~~--sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpv---i~-TqmLeSM~~~~~PtraEv~Dv~n- 335 (419)
++..-+.+.. .|.+-|. | ++-.+. --+..++.++++|+.+ +. |. +|.-|.+...+++.
T Consensus 99 v~~~v~~a~~~Gid~~rif--d-----~lnd~~-~~~~ai~~ak~~G~~~~~~i~yt~-------~p~~~~~~~~~~a~~ 163 (593)
T PRK14040 99 VERFVERAVKNGMDVFRVF--D-----AMNDPR-NLETALKAVRKVGAHAQGTLSYTT-------SPVHTLQTWVDLAKQ 163 (593)
T ss_pred HHHHHHHHHhcCCCEEEEe--e-----eCCcHH-HHHHHHHHHHHcCCeEEEEEEEee-------CCccCHHHHHHHHHH
Confidence 2222222222 3655553 1 111222 2345678899999964 33 33 56667788888775
Q ss_pred HHHcCCceEEecccccCCCCHHHHHHHHHHHHHHHh
Q 014746 336 AVLDGSDAILLGAETLRGLYPVETISIVGKICAEAK 371 (419)
Q Consensus 336 av~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~aE 371 (419)
+...|+|.+-+. +|+=.-.|.++-+....+.+...
T Consensus 164 l~~~Gad~i~i~-Dt~G~l~P~~~~~lv~~lk~~~~ 198 (593)
T PRK14040 164 LEDMGVDSLCIK-DMAGLLKPYAAYELVSRIKKRVD 198 (593)
T ss_pred HHHcCCCEEEEC-CCCCCcCHHHHHHHHHHHHHhcC
Confidence 455799999997 99999999999999888877653
No 443
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=29.82 E-value=1.5e+02 Score=30.02 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=25.0
Q ss_pred eEEEEecCCCCCC--HHHHHHHHHcCCCEEEEeccC
Q 014746 30 TKIVGTLGPRSRS--VEIISGCLNAGMSVARFDFSW 63 (419)
Q Consensus 30 tkIi~TiGp~~~~--~~~i~~li~~Gm~v~RiN~SH 63 (419)
..+++.++..+.. .+..+.+-++|.+.+=||+|+
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~sc 137 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYY 137 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 5788888554432 256677778899999999985
No 444
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=29.80 E-value=5.8e+02 Score=25.51 Aligned_cols=108 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCcEEEE---------------ecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCH------HhHhhHH
Q 014746 209 KEVISTWGARNNIDFLSL---------------SHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENT------EGLTHFD 267 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~l---------------sfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~------~gv~nl~ 267 (419)
.+.++.+ .+.|+.+|.+ ..+...+.+..++.....+.. ....|+|..+.. ++++...
T Consensus 91 ~~tv~~~-~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~-~d~~IiARTDa~~~~g~deAI~Ra~ 168 (285)
T TIGR02317 91 ARTVREM-EDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRD-EDFVIIARTDARAVEGLDAAIERAK 168 (285)
T ss_pred HHHHHHH-HHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccC-CCEEEEEEcCcccccCHHHHHHHHH
Q ss_pred HHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhH
Q 014746 268 EILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATD 332 (419)
Q Consensus 268 eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~D 332 (419)
.-+++ +|+||+ .-+.-...+-+.+++..+|+. .+|++. -.+|..+.+|..+
T Consensus 169 ay~~AGAD~vfi------------~g~~~~e~i~~~~~~i~~Pl~-~n~~~~-~~~p~~s~~eL~~ 220 (285)
T TIGR02317 169 AYVEAGADMIFP------------EALTSLEEFRQFAKAVKVPLL-ANMTEF-GKTPLFTADELRE 220 (285)
T ss_pred HHHHcCCCEEEe------------CCCCCHHHHHHHHHhcCCCEE-EEeccC-CCCCCCCHHHHHH
No 445
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=29.75 E-value=2.2e+02 Score=29.31 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=51.9
Q ss_pred HHHHHHhhhcCCcEEEEecC------CCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh----CcEEEEe
Q 014746 210 EVISTWGARNNIDFLSLSHT------RGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE----ADGIILA 279 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~lsfV------~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~----sDgImIa 279 (419)
+|.+ .+.+.|+|+|.+|-- ..+..+..+.+.....+ .++.||+- -||.+-.+|+++ +|++++|
T Consensus 233 ~dA~-~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~--~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 233 EDAD-VAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVN--HRVPIIFD----SGVRRGEHVFKALASGADAVAVG 305 (351)
T ss_pred HHHH-HHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhC--CCCeEEEE----CCCCCHHHHHHHHHcCCCEEEEC
Confidence 5554 568999999999621 22223344444332223 35666663 455555555554 7999999
Q ss_pred CCCccC--CCCch----hHHHHHHHHHHHHHHcCCc
Q 014746 280 RGNLGV--DLPPE----KVFLFQKAALYKCNMAGKP 309 (419)
Q Consensus 280 rgDLg~--elg~e----~v~~~qk~Ii~a~~~~gkp 309 (419)
|.=|-. .-|-+ .+..+++++-......|..
T Consensus 306 r~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 306 RPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 954421 11222 3334555666666666654
No 446
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=29.61 E-value=5.9e+02 Score=25.52 Aligned_cols=148 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-
Q 014746 235 VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV- 312 (419)
Q Consensus 235 v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~- 312 (419)
...++.+..+.. ..++|...+....-++.+..-++. .+-||+. |-.+++++=-..-+++++.|++.|.+|=-
T Consensus 64 ~~~~~~~A~~~~--~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaE 137 (286)
T PRK08610 64 VKMVEGLMHDLN--ITIPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHSPFEENVATTKKVVEYAHEKGVSVEAE 137 (286)
T ss_pred HHHHHHHHHHcC--CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Q ss_pred EccccccccCCCcch---hhHhHHHHHHHc-CCceEEecccccCCCC---HHHHHHHHHHHHHHHhc------CCcChHH
Q 014746 313 TRVVDSMTDNLRPTR---AEATDVANAVLD-GSDAILLGAETLRGLY---PVETISIVGKICAEAKT------TNATSES 379 (419)
Q Consensus 313 TqmLeSM~~~~~Ptr---aEv~Dv~nav~~-G~D~vmLs~ETa~G~y---P~eaV~~~~~I~~~aE~------~~~~~~~ 379 (419)
-..+-.=.....-+. ....+...|+.. |+|++-.|--|+=|.| |---.+.+.+|.....- .+.-+++
T Consensus 138 lG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e 217 (286)
T PRK08610 138 LGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTK 217 (286)
T ss_pred EeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHH
Q ss_pred HHHHHHHHH
Q 014746 380 ALKVALDYG 388 (419)
Q Consensus 380 ~~~~a~~~~ 388 (419)
.++.|++.+
T Consensus 218 ~~~~ai~~G 226 (286)
T PRK08610 218 DIQKAIPFG 226 (286)
T ss_pred HHHHHHHCC
No 447
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=29.51 E-value=3.3e+02 Score=25.69 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHc-CCcEEE
Q 014746 237 HARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMA-GKPAVV 312 (419)
Q Consensus 237 ~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~-gkpvi~ 312 (419)
.+.+.+.+.+ ..+.+-+.-|.... +|++++++..|.|+-+-. . +.....+...|+++ ++|.+.
T Consensus 85 ~a~~~l~~ln--p~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~D---------~-~~~r~~l~~~~~~~~~~p~I~ 148 (212)
T PRK08644 85 ALKENLLEIN--PFVEIEAHNEKIDE-DNIEELFKDCDIVVEAFD---------N-AETKAMLVETVLEHPGKKLVA 148 (212)
T ss_pred HHHHHHHHHC--CCCEEEEEeeecCH-HHHHHHHcCCCEEEECCC---------C-HHHHHHHHHHHHHhCCCCEEE
Confidence 4445566555 55665555444443 577788877887776622 2 23455778899998 999997
No 448
>PLN02417 dihydrodipicolinate synthase
Probab=29.25 E-value=5.6e+02 Score=25.13 Aligned_cols=37 Identities=11% Similarity=-0.079 Sum_probs=20.5
Q ss_pred HHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHHH
Q 014746 334 ANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (419)
Q Consensus 334 ~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~a 370 (419)
-.|-..|+|++|+..=.-...-+-+.+++...|++..
T Consensus 90 ~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 90 EQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG 126 (280)
T ss_pred HHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC
Confidence 3455667777777543222222355666666666644
No 449
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=29.16 E-value=1.7e+02 Score=27.22 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=30.1
Q ss_pred HHHHHhhhcCCcEEEEec--CCCHHHHHHHHHHHHhcCCCCCceEE
Q 014746 211 VISTWGARNNIDFLSLSH--TRGAEDVRHARDFLSQLGDLGQTQIF 254 (419)
Q Consensus 211 di~~~~l~~g~d~I~lsf--V~saedv~~v~~~l~~~~~~~~~~Ii 254 (419)
++...+.+.++|+|++|+ ..+..++.++.+.+++.+.+.+++|+
T Consensus 124 ~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~ 169 (201)
T cd02070 124 EFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVM 169 (201)
T ss_pred HHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEE
Confidence 333466789999999998 56667777777778776521245544
No 450
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=29.13 E-value=96 Score=26.63 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEccccccccCCCcchh----h-HhHHHHHHHcCCceEEecc
Q 014746 294 LFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRA----E-ATDVANAVLDGSDAILLGA 348 (419)
Q Consensus 294 ~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~Ptra----E-v~Dv~nav~~G~D~vmLs~ 348 (419)
.+.+.+.+.+.+.|.|++.|.+-.+++...-|--. - ..+-++.....+|++++-|
T Consensus 26 ~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG 85 (137)
T PF00205_consen 26 GAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIG 85 (137)
T ss_dssp TCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEES
T ss_pred hHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEEC
Confidence 55678888999999999778777666665555210 0 1233555668899999865
No 451
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=29.08 E-value=5.6e+02 Score=25.16 Aligned_cols=83 Identities=23% Similarity=0.309 Sum_probs=46.5
Q ss_pred ceEEEEe--cCHHhHhhHHHHHhh---CcEEEE-------eCCCccCCCCchhHHHHHHHHHHHHHHc-CCcEEE-Eccc
Q 014746 251 TQIFAKI--ENTEGLTHFDEILHE---ADGIIL-------ARGNLGVDLPPEKVFLFQKAALYKCNMA-GKPAVV-TRVV 316 (419)
Q Consensus 251 ~~IiaKI--Et~~gv~nl~eI~~~---sDgImI-------argDLg~elg~e~v~~~qk~Ii~a~~~~-gkpvi~-TqmL 316 (419)
..++++| .+++......+.++. +|+|=+ ..| |..++ .-+..-.+++++.+++ .+|+++ -
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g--g~~~~--~~~~~~~eiv~~vr~~~~~pv~vKl--- 164 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG--GMAFG--TDPELAYEVVKAVKEVVKVPVIVKL--- 164 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC--ccccc--cCHHHHHHHHHHHHHhcCCCEEEEc---
Confidence 4566666 344444444444433 467755 112 22222 1234556677777766 899987 3
Q ss_pred cccccCCCcchhhHhHHHH-HHHcCCceEEec
Q 014746 317 DSMTDNLRPTRAEATDVAN-AVLDGSDAILLG 347 (419)
Q Consensus 317 eSM~~~~~PtraEv~Dv~n-av~~G~D~vmLs 347 (419)
.|+-.+..+++. +...|+|++.++
T Consensus 165 -------~~~~~~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 165 -------TPNVTDIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred -------CCCchhHHHHHHHHHHcCCCEEEEE
Confidence 234446666664 456799998774
No 452
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=28.97 E-value=6e+02 Score=25.40 Aligned_cols=144 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-
Q 014746 235 VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV- 312 (419)
Q Consensus 235 v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~- 312 (419)
...++.+..+.. ++|...+-...-++.+.+=++. .+-||+. +-++++++=-..-+++++.|+++|.+|=-
T Consensus 61 ~~~~~~~a~~~~----VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaE 132 (282)
T TIGR01858 61 VALCSAASTTYN----MPLALHLDHHESLDDIRQKVHAGVRSAMID----GSHFPFAQNVKLVKEVVDFCHRQDCSVEAE 132 (282)
T ss_pred HHHHHHHHHHCC----CCEEEECCCCCCHHHHHHHHHcCCCEEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Q ss_pred -Ecc-------ccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCC---HHHHHHHHHHHHHHHhc------CCc
Q 014746 313 -TRV-------VDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLY---PVETISIVGKICAEAKT------TNA 375 (419)
Q Consensus 313 -Tqm-------LeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~y---P~eaV~~~~~I~~~aE~------~~~ 375 (419)
.++ ....-....-+.+|+.+-...- |+|++=.+--|+=|.| |.--.+.|.+|.+.... .+.
T Consensus 133 lG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T--gvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG 210 (282)
T TIGR01858 133 LGRLGGVEDDLSVDEEDALYTDPQEAKEFVEAT--GVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASD 210 (282)
T ss_pred EEecCCccCCCccccchhccCCHHHHHHHHHHH--CcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCC
Q ss_pred ChHHHHHHHHHHH
Q 014746 376 TSESALKVALDYG 388 (419)
Q Consensus 376 ~~~~~~~~a~~~~ 388 (419)
-+++.++.|++.+
T Consensus 211 ~~~e~~~~ai~~G 223 (282)
T TIGR01858 211 VPDEDVRRTIELG 223 (282)
T ss_pred CCHHHHHHHHHcC
No 453
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=28.74 E-value=83 Score=30.61 Aligned_cols=83 Identities=17% Similarity=0.288 Sum_probs=51.4
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCC
Q 014746 209 KEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLP 288 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg 288 (419)
..++. ++..|.++|-+--.++. . ..+...+ .+ .+..+++ +..+.+++++...|++.|+.| |+....
T Consensus 42 la~l~--~~~~g~~~v~~~~~~~~---~---~~i~~~~--pe-~~~~~~~--~~~~~~~~~~~~~davvig~G-l~~~~~ 107 (272)
T TIGR00196 42 LAALA--ALRAGAGLVTVAAPENV---I---TLINSVS--PE-LIVHRLG--WKVDEDEELLERYDVVVIGPG-LGQDPS 107 (272)
T ss_pred HHHHH--HHHhCCCeEEEEEchhh---H---HHHhhcC--CE-EEEecch--hhHHHHHhhhccCCEEEEcCC-CCCCHH
Confidence 46664 36778888776544432 1 1233222 22 2333343 466777787778899999877 443322
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEE
Q 014746 289 PEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 289 ~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
..++++.++++++|+++
T Consensus 108 -------~~~l~~~~~~~~~pvVl 124 (272)
T TIGR00196 108 -------FKKAVEEVLELDKPVVL 124 (272)
T ss_pred -------HHHHHHHHHhcCCCEEE
Confidence 55678888889999988
No 454
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=28.60 E-value=1.8e+02 Score=24.31 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=24.5
Q ss_pred HHhhhcCCcEEEEec--CCCHHHHHHHHHHHHhcC
Q 014746 214 TWGARNNIDFLSLSH--TRGAEDVRHARDFLSQLG 246 (419)
Q Consensus 214 ~~~l~~g~d~I~lsf--V~saedv~~v~~~l~~~~ 246 (419)
..+.+.++|.|.+|. -.+.+++.++.+.+++.+
T Consensus 44 ~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred HHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 466788999999998 456666777777776654
No 455
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.56 E-value=1.9e+02 Score=24.25 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCC
Q 014746 229 TRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGK 308 (419)
Q Consensus 229 V~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gk 308 (419)
..|.--+..+++++.++| -+..|.+ -++..+++...-.|.++++| .+....+.+-+.|...|+
T Consensus 11 aSSs~la~km~~~a~~~g--i~~~i~a-----~~~~e~~~~~~~~Dvill~P----------Qv~~~~~~i~~~~~~~~i 73 (99)
T cd05565 11 GTSGLLANALNKGAKERG--VPLEAAA-----GAYGSHYDMIPDYDLVILAP----------QMASYYDELKKDTDRLGI 73 (99)
T ss_pred CCHHHHHHHHHHHHHHCC--CcEEEEE-----eeHHHHHHhccCCCEEEEcC----------hHHHHHHHHHHHhhhcCC
Confidence 445556788888998877 3434333 34555666677789999874 577777889999999999
Q ss_pred cEEE
Q 014746 309 PAVV 312 (419)
Q Consensus 309 pvi~ 312 (419)
||.+
T Consensus 74 pv~~ 77 (99)
T cd05565 74 KLVT 77 (99)
T ss_pred CEEE
Confidence 9986
No 456
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=28.54 E-value=4.5e+02 Score=23.84 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=71.9
Q ss_pred HHhhhcCCcEEEE-----ecCCCH----HHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCc
Q 014746 214 TWGARNNIDFLSL-----SHTRGA----EDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNL 283 (419)
Q Consensus 214 ~~~l~~g~d~I~l-----sfV~sa----edv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDL 283 (419)
+.+.+.|+|+|.+ +|+.+. +.++++++.. + ....+-.++.++.. .++.+.++ +||+.+--+.
T Consensus 19 ~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~--~~~~v~l~~~d~~~--~~~~~~~~g~dgv~vh~~~- 90 (211)
T cd00429 19 KRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---D--LPLDVHLMVENPER--YIEAFAKAGADIITFHAEA- 90 (211)
T ss_pred HHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---C--CcEEEEeeeCCHHH--HHHHHHHcCCCEEEECccc-
Confidence 3678899999999 776443 5555555433 1 22334566666633 46666655 5998762111
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecc--cccCC-CCHHHH
Q 014746 284 GVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA--ETLRG-LYPVET 359 (419)
Q Consensus 284 g~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~--ETa~G-~yP~ea 359 (419)
. . .....++.++++|+.+++ +. |+.. .. ....+..++|.+++.+ .|..| .++...
T Consensus 91 ------~--~-~~~~~~~~~~~~~~~~g~~~~----------~~~~-~~-~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~ 149 (211)
T cd00429 91 ------T--D-HLHRTIQLIKELGMKAGVALN----------PGTP-VE-VLEPYLDEVDLVLVMSVNPGFGGQKFIPEV 149 (211)
T ss_pred ------h--h-hHHHHHHHHHHCCCeEEEEec----------CCCC-HH-HHHHHHhhCCEEEEEEECCCCCCcccCHHH
Confidence 0 1 113448888899988887 42 1111 11 1233344578775532 13333 577777
Q ss_pred HHHHHHHHHHHh
Q 014746 360 ISIVGKICAEAK 371 (419)
Q Consensus 360 V~~~~~I~~~aE 371 (419)
.+.++++.+...
T Consensus 150 ~~~i~~~~~~~~ 161 (211)
T cd00429 150 LEKIRKLRELIP 161 (211)
T ss_pred HHHHHHHHHHHH
Confidence 777777655543
No 457
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=28.53 E-value=2.1e+02 Score=24.43 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=32.3
Q ss_pred CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHH
Q 014746 273 ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVL 338 (419)
Q Consensus 273 sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~ 338 (419)
+-|+.|..|+.--++| +.++..|++++.|+|. .|...-..|+.+.+.
T Consensus 73 ~agL~i~~~~~~~~iP--------~~~i~~A~~~~lPli~-----------ip~~~~f~~I~~~v~ 119 (123)
T PF07905_consen 73 AAGLGIKTGRYLDEIP--------EEIIELADELGLPLIE-----------IPWEVPFSDITREVM 119 (123)
T ss_pred CeEEEEeccCccccCC--------HHHHHHHHHcCCCEEE-----------eCCCCCHHHHHHHHH
Confidence 3478887775444555 7799999999999997 444444556665553
No 458
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=28.47 E-value=7.8e+02 Score=26.57 Aligned_cols=153 Identities=17% Similarity=0.195 Sum_probs=90.4
Q ss_pred CceEEEEecC------HHhHhhHHHHHhhCcEEEEeC--CCccC--CCCchh---HHHHHHHHHHHHH------HcCCcE
Q 014746 250 QTQIFAKIEN------TEGLTHFDEILHEADGIILAR--GNLGV--DLPPEK---VFLFQKAALYKCN------MAGKPA 310 (419)
Q Consensus 250 ~~~IiaKIEt------~~gv~nl~eI~~~sDgImIar--gDLg~--elg~e~---v~~~qk~Ii~a~~------~~gkpv 310 (419)
.+.+++==++ +.-.+|+..+.+. -..+++| |.|+. +.|..+ ...+...+..... -.||-+
T Consensus 181 ~PvliaPaMN~~M~~npat~~Nl~~L~~~-G~~vi~P~~g~lA~~g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~gkkv 259 (475)
T PRK13982 181 RPILLAPAMNPLMWNNPATRRNVAQLKRD-GVHMIGPNAGEMAERGEAGVGRMAEPLEIAAAAEALLRPPQPKPLAGRRV 259 (475)
T ss_pred CCEEEEEcCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCccccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCCEE
Confidence 3455554444 4455677766442 2344444 55653 666543 3334444443332 357777
Q ss_pred EEEccccccccCCCcchhhHhHHH----------------HHHHcCCceEEecccccCCC------CHHHHHHHHHHHHH
Q 014746 311 VVTRVVDSMTDNLRPTRAEATDVA----------------NAVLDGSDAILLGAETLRGL------YPVETISIVGKICA 368 (419)
Q Consensus 311 i~TqmLeSM~~~~~PtraEv~Dv~----------------nav~~G~D~vmLs~ETa~G~------yP~eaV~~~~~I~~ 368 (419)
++|- -|||..+-+|- .|...|+|..+++|-++.-. +++++.+-|..-+.
T Consensus 260 LITa---------GpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~ 330 (475)
T PRK13982 260 LITA---------GPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLADPQGVKVIHVESARQMLAAVE 330 (475)
T ss_pred EEec---------CCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCCCCCCceEEEecCHHHHHHHHH
Confidence 7643 67777664442 56668999999998776421 34566666666555
Q ss_pred HHhc----------------------------------------------C--C----------cChHHHHHHHHHHHHH
Q 014746 369 EAKT----------------------------------------------T--N----------ATSESALKVALDYGKA 390 (419)
Q Consensus 369 ~aE~----------------------------------------------~--~----------~~~~~~~~~a~~~~~~ 390 (419)
+.-. . + .++++.++.|.+.+++
T Consensus 331 ~~~~~Di~I~aAAVaDyrp~~~~~~KiKk~~~~~~~L~L~~nPDIL~~l~~~~~~~~~~lVGFaaEt~~l~~~A~~KL~~ 410 (475)
T PRK13982 331 AALPADIAIFAAAVADWRVATEGGQKLKKGAAGPPPLQLVENPDILATISKLAENRPPLVIGFAAETEHLIDNARAKLAR 410 (475)
T ss_pred hhCCCCEEEEeccccceeeccccccccCcCCCCCceeeeeeCcHHHHHHhhhcccCCCEEEEEccCchhHHHHHHHHHHH
Confidence 4332 0 0 1445678888888888
Q ss_pred CCCCCCCCEEEE--E----eec-CCccEEEEEE
Q 014746 391 HGVIKSHDRVVI--C----QKV-GDSAVVKIME 416 (419)
Q Consensus 391 ~~~~~~gd~vv~--~----~g~-g~tn~~~i~~ 416 (419)
+|+ |.||. + .|+ +.+|.+.++.
T Consensus 411 K~~----D~IvaN~v~~~~~gfg~d~n~v~ii~ 439 (475)
T PRK13982 411 KGC----DWIVANDVSPATGVMGGDRNTVHLLS 439 (475)
T ss_pred cCC----CEEEEccCCcCCCCcCCCccEEEEEE
Confidence 887 88886 2 234 4788888775
No 459
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=28.44 E-value=5.5e+02 Score=26.09 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=68.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHH
Q 014746 220 NIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAA 299 (419)
Q Consensus 220 g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~I 299 (419)
|+..+...+..+.++..++...+.+.+ ..-.+-..|-+|. . +| +.+++ .-+..-..+
T Consensus 96 ~~~i~~~~~~~~~~~~~d~~~~~~~~~--~ad~ielNiScPn-t----------------~g--~~~l~--~~~e~l~~l 152 (310)
T COG0167 96 GVNIGKNKGGPSEEAWADYARLLEEAG--DADAIELNISCPN-T----------------PG--GRALG--QDPELLEKL 152 (310)
T ss_pred CcceEEecCCCcHHHHHHHHHHHHhcC--CCCEEEEEccCCC-C----------------CC--hhhhc--cCHHHHHHH
Confidence 344444444446777777777766554 1112333333322 1 11 22222 124444667
Q ss_pred HHHHHHc-CCcEEEEccccccccCCCcchhhHhHHHHHH-HcCCceEEecccccCCC----CH-----------------
Q 014746 300 LYKCNMA-GKPAVVTRVVDSMTDNLRPTRAEATDVANAV-LDGSDAILLGAETLRGL----YP----------------- 356 (419)
Q Consensus 300 i~a~~~~-gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav-~~G~D~vmLs~ETa~G~----yP----------------- 356 (419)
+.++++. .+|+++ +-.|+-+++.+++.++ ..|+|++.+++=|-.|. ++
T Consensus 153 ~~~vk~~~~~Pv~v---------Kl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~i 223 (310)
T COG0167 153 LEAVKAATKVPVFV---------KLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPL 223 (310)
T ss_pred HHHHHhcccCceEE---------EeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccc
Confidence 7666655 689997 4467889999988554 55799999986544333 11
Q ss_pred -HHHHHHHHHHHHHHh
Q 014746 357 -VETISIVGKICAEAK 371 (419)
Q Consensus 357 -~eaV~~~~~I~~~aE 371 (419)
--|+++++.+.++.+
T Consensus 224 kp~al~~v~~l~~~~~ 239 (310)
T COG0167 224 KPIALRVVAELYKRLG 239 (310)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 135677777777766
No 460
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=28.39 E-value=7.3e+02 Score=26.50 Aligned_cols=138 Identities=15% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCch
Q 014746 211 VISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPE 290 (419)
Q Consensus 211 di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e 290 (419)
+.. .+.+.|+|+|-++ +..-.+..+|+.+. ....|=+-.-|.+.+....+ .-+|.+.+|+- +.......
T Consensus 359 ~~~-lA~~~~adGvHl~--~~d~~~~~~r~~~~-----~~~~iG~S~h~~~e~~~a~~--~gadyi~~gpi-f~t~tk~~ 427 (502)
T PLN02898 359 RVD-VALACDADGVHLG--QSDMPVRLARSLLG-----PGKIIGVSCKTPEQAEQAWK--DGADYIGCGGV-FPTNTKAN 427 (502)
T ss_pred hHH-HHHhcCCCEEEeC--hHhcCHHHHHHhcC-----CCCEEEEeCCCHHHHHHHhh--cCCCEEEECCe-ecCCCCCC
Q ss_pred hHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCc---eEEecccccCCCCHHHHHHHHHHH
Q 014746 291 KVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSD---AILLGAETLRGLYPVETISIVGKI 366 (419)
Q Consensus 291 ~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D---~vmLs~ETa~G~yP~eaV~~~~~I 366 (419)
.-+.-...+-+.+.....|++. .. -...++......|+| ++-+.+.-..=..|.++++.+.++
T Consensus 428 ~~~~g~~~~~~~~~~~~~Pv~aiGG-------------I~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~ 494 (502)
T PLN02898 428 NKTIGLDGLREVCEASKLPVVAIGG-------------ISASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAI 494 (502)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEECC-------------CCHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHH
Q ss_pred HHHHhc
Q 014746 367 CAEAKT 372 (419)
Q Consensus 367 ~~~aE~ 372 (419)
+.+..+
T Consensus 495 ~~~~~~ 500 (502)
T PLN02898 495 LTEALS 500 (502)
T ss_pred HHHHhc
No 461
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=28.32 E-value=1.1e+02 Score=26.00 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=26.9
Q ss_pred cccchhcCCCCEEEeeccccCCceEEEEEEEEEeecCCeEEEEEEeCcEE
Q 014746 136 SGLSKAVKKGDTIFIGQYLFTGNETTSVMLEVTDVDGEDVVCQIKNSAIL 185 (419)
Q Consensus 136 ~~l~~~v~~Gd~I~id~~~~DG~i~l~V~l~v~~v~~~~i~~~v~~gG~l 185 (419)
.++.+.+++||+|..- .| |..+| .+++++.+..++-.|.++
T Consensus 47 ~~~~~~Lk~Gd~VvT~----gG-i~G~V----v~i~~~~v~lei~~g~~i 87 (106)
T PRK05585 47 KKMLSSLAKGDEVVTN----GG-IIGKV----TKVSEDFVIIELNDDTEI 87 (106)
T ss_pred HHHHHhcCCCCEEEEC----CC-eEEEE----EEEeCCEEEEEECCCeEE
Confidence 4677888999999888 55 44455 334567777766444444
No 462
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=28.31 E-value=1.8e+02 Score=30.89 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=43.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHHcCC----------------CEEEEeccCCCHHHHHHHHHHHHHHHHh
Q 014746 30 TKIVGTLGPRSRSVEIISGCLNAGM----------------SVARFDFSWGDTAYHQETLENLKIAIKS 82 (419)
Q Consensus 30 tkIi~TiGp~~~~~~~i~~li~~Gm----------------~v~RiN~SHg~~e~~~~~i~~ir~a~~~ 82 (419)
--+.+++.+..++.+.+....+.|+ +.+|||||+-+.++..+-+..+.++.++
T Consensus 387 ~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~ 455 (459)
T COG1167 387 LFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLRE 455 (459)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 4588888888788888888887763 3699999999999999999888887654
No 463
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=28.24 E-value=1.9e+02 Score=26.27 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=38.5
Q ss_pred HhHhhHHHHHhh--CcE--EEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 261 EGLTHFDEILHE--ADG--IILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 261 ~gv~nl~eI~~~--sDg--ImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
.+++.+++.+.. .|. ||+|-.|+....+.+++..-.+.++..++++|..+++
T Consensus 58 ~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~il 113 (191)
T PRK10528 58 QGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLL 113 (191)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 455666665532 464 5668889877777778888889999999998887776
No 464
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=28.12 E-value=3e+02 Score=28.06 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 236 RHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 236 ~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
..+++.+.+.+ ..+.|-+-.+... -+|++++++-.|.|+.+-.+ +.....+-..|+++|+|.+.
T Consensus 83 ~aa~~~l~~in--p~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~----------~~~r~~in~~~~~~~ip~i~ 146 (338)
T PRK12475 83 IAAKEHLRKIN--SEVEIVPVVTDVT-VEELEELVKEVDLIIDATDN----------FDTRLLINDLSQKYNIPWIY 146 (338)
T ss_pred HHHHHHHHHHC--CCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 44455666666 6666655444332 35788888888988887543 23445577899999999887
No 465
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=28.06 E-value=1.8e+02 Score=27.16 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=29.2
Q ss_pred HHhhhcCCcEEEEec--CCCHHHHHHHHHHHHhcCCCCCceEE
Q 014746 214 TWGARNNIDFLSLSH--TRGAEDVRHARDFLSQLGDLGQTQIF 254 (419)
Q Consensus 214 ~~~l~~g~d~I~lsf--V~saedv~~v~~~l~~~~~~~~~~Ii 254 (419)
+.+.+.++|+|++|+ ..+...++++.+.+++.+..++++|+
T Consensus 129 ~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~ 171 (197)
T TIGR02370 129 EKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFM 171 (197)
T ss_pred HHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEE
Confidence 466789999999987 46667777777788777533445544
No 466
>PRK08328 hypothetical protein; Provisional
Probab=28.06 E-value=3.3e+02 Score=25.99 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=46.3
Q ss_pred HHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE--Eccc
Q 014746 239 RDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV--TRVV 316 (419)
Q Consensus 239 ~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~--TqmL 316 (419)
++.+.+.+ .++.|-+--+.. .-+|++++++-.|.|+-+-.+ +..+..+-..|+++|+|++. ++=+
T Consensus 88 ~~~l~~~n--p~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~----------~~~r~~l~~~~~~~~ip~i~g~~~g~ 154 (231)
T PRK08328 88 KWKLERFN--SDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDN----------FETRYLLDDYAHKKGIPLVHGAVEGT 154 (231)
T ss_pred HHHHHHhC--CCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEeeccC
Confidence 44455555 566665533332 346788888888877765433 23445566789999999988 5555
Q ss_pred cccccCCCc
Q 014746 317 DSMTDNLRP 325 (419)
Q Consensus 317 eSM~~~~~P 325 (419)
..++..-.|
T Consensus 155 ~G~v~~~~p 163 (231)
T PRK08328 155 YGQVTTIVP 163 (231)
T ss_pred EEEEEEECC
Confidence 555543334
No 467
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=28.04 E-value=33 Score=35.63 Aligned_cols=107 Identities=19% Similarity=0.312 Sum_probs=60.1
Q ss_pred cCceecCCCCCccCHHHHHHHhhhcCCcEEEEecCC---------CHHH--------HHHHHHHHHhcCCCCCceEEEEe
Q 014746 195 SQIRIDLPTLTDKDKEVISTWGARNNIDFLSLSHTR---------GAED--------VRHARDFLSQLGDLGQTQIFAKI 257 (419)
Q Consensus 195 p~~~~~lp~lte~D~~di~~~~l~~g~d~I~lsfV~---------saed--------v~~v~~~l~~~~~~~~~~IiaKI 257 (419)
|++++.+........+++...+.+.|+|+|.+.=-+ ..++ +.++.++|.+.+..+.+.+++
T Consensus 202 ~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~-- 279 (368)
T PF01645_consen 202 PGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIA-- 279 (368)
T ss_dssp TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEE--
T ss_pred CCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEE--
Confidence 566655555556677777644789999999986443 2333 667777887766545676665
Q ss_pred cCHHhHhhHHHHHhh----CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-Ec
Q 014746 258 ENTEGLTHFDEILHE----ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TR 314 (419)
Q Consensus 258 Et~~gv~nl~eI~~~----sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-Tq 314 (419)
--++..-++++.+ +|++-+||+=| +.+| ....+.|.....|+.+ ||
T Consensus 280 --sGgl~t~~dv~kalaLGAD~v~igt~~l-iAlG--------C~~~~~C~~~~CP~Giatq 330 (368)
T PF01645_consen 280 --SGGLRTGDDVAKALALGADAVYIGTAAL-IALG--------CIQCRKCHTGTCPVGIATQ 330 (368)
T ss_dssp --ESS--SHHHHHHHHHCT-SEEE-SHHHH-HHCT----------S---CCCT--TTSSS--
T ss_pred --eCCccCHHHHHHHHhcCCCeeEecchhh-hhcc--------hHHHhcccCCCCCceeeec
Confidence 3456666666665 79999987654 2233 3355678888899999 98
No 468
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=28.04 E-value=2.1e+02 Score=29.07 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=43.3
Q ss_pred ccccccCCCCCCCCCCCeEEEEecCCCC--CCHHHHHHHHHcC-CCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEE
Q 014746 13 RMASILEPSKPTFFPAMTKIVGTLGPRS--RSVEIISGCLNAG-MSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAV 89 (419)
Q Consensus 13 ~~~~~~~~~~~~~~~~~tkIi~TiGp~~--~~~~~i~~li~~G-m~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~I 89 (419)
++.++|..... .+..+-+|++... ...+...++++.| -+.+.+-....+.++-.+.++.+|+ .++..+.|
T Consensus 119 Pl~~LLGg~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~~~~~~d~~~v~avr~---~~g~~~~l 191 (365)
T cd03318 119 PVSELLGGRVR----DSLPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGARPPADDLAHVEAIAK---ALGDRASV 191 (365)
T ss_pred CHHHHcCCCcC----CceEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCCCChHHHHHHHHHHHH---HcCCCcEE
Confidence 45556653321 3456667764322 2234556788899 9999998865455544555555554 45544555
Q ss_pred EEecC
Q 014746 90 MLDTI 94 (419)
Q Consensus 90 l~Dl~ 94 (419)
++|--
T Consensus 192 ~iDaN 196 (365)
T cd03318 192 RVDVN 196 (365)
T ss_pred EEECC
Confidence 66643
No 469
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=28.02 E-value=2.2e+02 Score=27.71 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred CCeEEEEec-----CCCCCCH-HHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHh-cCCceEEE
Q 014746 28 AMTKIVGTL-----GPRSRSV-EIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKS-TKKLCAVM 90 (419)
Q Consensus 28 ~~tkIi~Ti-----Gp~~~~~-~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~-~~~~i~Il 90 (419)
..+|+|++. .|+.++. +.+++|.+.|.|+++|-..=-+.++..++++..+++.+. .+.|+..+
T Consensus 134 ~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~ 203 (253)
T PRK02412 134 HGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITM 203 (253)
T ss_pred cCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEE
No 470
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=27.92 E-value=3.9e+02 Score=27.16 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=39.9
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHc--CCCEEEEeccCC--CHHHHHHHHHHHHHHHHhcCCceEEEEecC
Q 014746 29 MTKIVGTLGPRSRSVEIISGCLNA--GMSVARFDFSWG--DTAYHQETLENLKIAIKSTKKLCAVMLDTI 94 (419)
Q Consensus 29 ~tkIi~TiGp~~~~~~~i~~li~~--Gm~v~RiN~SHg--~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~ 94 (419)
+..+-+|+ |.. +++.+.++++. |.+.+.+..+.. +.++-.+.++.+|++ .|..+.|++|--
T Consensus 78 ~vp~~~tv-~~~-~~e~~~~~~~~~~G~~~~KvKVg~~~~~~~~Di~rv~avRe~---lGpd~~LrvDAN 142 (327)
T PRK02901 78 RVPVNATV-PAV-DAAQVPEVLARFPGCRTAKVKVAEPGQTLADDVARVNAVRDA---LGPDGRVRVDAN 142 (327)
T ss_pred eEEeeEEe-CCC-CHHHHHHHHHHhCCCCEEEEEECCCCCCHHHHHHHHHHHHHh---cCCCCEEEEECC
Confidence 45566775 433 46778888886 999999998753 555555666666654 555556666643
No 471
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=27.89 E-value=4.7e+02 Score=23.90 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=68.8
Q ss_pred CccCHHHHHHHhhhcCCcEEEEe--cCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCC
Q 014746 205 TDKDKEVISTWGARNNIDFLSLS--HTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARG 281 (419)
Q Consensus 205 te~D~~di~~~~l~~g~d~I~ls--fV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIarg 281 (419)
+.++...+.+ +++.|+++|=+. + .++.-...++++-+.... ..+.+=.|+-++... .+++..++ +|.|.+-.
T Consensus 10 ~~~~a~~~~~-~l~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~~-~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~- 84 (206)
T TIGR03128 10 DIEEALELAE-KVADYVDIIEIGTPL-IKNEGIEAVKEMKEAFPD-RKVLADLKTMDAGEY-EAEQAFAAGADIVTVLG- 84 (206)
T ss_pred CHHHHHHHHH-HcccCeeEEEeCCHH-HHHhCHHHHHHHHHHCCC-CEEEEEEeeccchHH-HHHHHHHcCCCEEEEec-
Confidence 4455555543 358888888773 3 222223333332222210 122222233444422 45555554 68776531
Q ss_pred CccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccc---cCCCCHH
Q 014746 282 NLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET---LRGLYPV 357 (419)
Q Consensus 282 DLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ET---a~G~yP~ 357 (419)
+.+ +..-.+++..|+++|++++. -. +|.- -..++..+...|+|.+-+...+ ..+....
T Consensus 85 ----~~~----~~~~~~~i~~~~~~g~~~~~~~~-------~~~t---~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~ 146 (206)
T TIGR03128 85 ----VAD----DATIKGAVKAAKKHGKEVQVDLI-------NVKD---KVKRAKELKELGADYIGVHTGLDEQAKGQNPF 146 (206)
T ss_pred ----cCC----HHHHHHHHHHHHHcCCEEEEEec-------CCCC---hHHHHHHHHHcCCCEEEEcCCcCcccCCCCCH
Confidence 111 12336788899999999986 21 1111 1234455666699988775322 2223334
Q ss_pred HHHHHHHHH
Q 014746 358 ETISIVGKI 366 (419)
Q Consensus 358 eaV~~~~~I 366 (419)
+-++.+.+.
T Consensus 147 ~~i~~l~~~ 155 (206)
T TIGR03128 147 EDLQTILKL 155 (206)
T ss_pred HHHHHHHHh
Confidence 445544443
No 472
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=27.79 E-value=65 Score=25.61 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEeec-CCc
Q 014746 380 ALKVALDYGKAHGVIKSHDRVVICQKV-GDS 409 (419)
Q Consensus 380 ~~~~a~~~~~~~~~~~~gd~vv~~~g~-g~t 409 (419)
.+=.++..+.++|-+++||+|++++-- |.+
T Consensus 52 ~~~~~L~~~~~~g~~~~Gd~vl~~~~G~G~~ 82 (90)
T PF08541_consen 52 SIPINLADALEEGRIKPGDRVLLVGFGAGFS 82 (90)
T ss_dssp HHHHHHHHHHHTTSSCTTEEEEEEEEETTTE
T ss_pred hHHHHHHHHHHcCCCCCCCEEEEEEEEhhhe
Confidence 455677889999999999999986543 543
No 473
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=27.78 E-value=6.4e+02 Score=25.35 Aligned_cols=137 Identities=17% Similarity=0.163 Sum_probs=69.6
Q ss_pred eecCCCCCc-cCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEe---cCHHhHhhHHHHHhhC
Q 014746 198 RIDLPTLTD-KDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKI---ENTEGLTHFDEILHEA 273 (419)
Q Consensus 198 ~~~lp~lte-~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKI---Et~~gv~nl~eI~~~s 273 (419)
.+.+|.+|| .|.+++. .+.+. +|.+-+| .++..+-.-+++. .+ .+..|..|= -+++-..+.-|-+...
T Consensus 85 ~~GlpvvTeV~~~~~~~-~~ae~-vDilQIg-Ar~~rntdLL~a~-~~----t~kpV~lKrGqf~s~~e~~~aae~i~~~ 156 (281)
T PRK12457 85 RFGVPVITDVHEVEQAA-PVAEV-ADVLQVP-AFLARQTDLVVAI-AK----TGKPVNIKKPQFMSPTQMKHVVSKCREA 156 (281)
T ss_pred HHCCceEEEeCCHHHHH-HHhhh-CeEEeeC-chhhchHHHHHHH-hc----cCCeEEecCCCcCCHHHHHHHHHHHHHc
Confidence 456666666 3555664 54555 8888887 3444443333222 11 222333321 2344444444433332
Q ss_pred ---cEEEEeCCCccCCCCchhHHHHHHHHHHHHHHc--CCcEEE--Eccccccc---cCCCcchhhHhHHH-HHHHcCCc
Q 014746 274 ---DGIILARGNLGVDLPPEKVFLFQKAALYKCNMA--GKPAVV--TRVVDSMT---DNLRPTRAEATDVA-NAVLDGSD 342 (419)
Q Consensus 274 ---DgImIargDLg~elg~e~v~~~qk~Ii~a~~~~--gkpvi~--TqmLeSM~---~~~~PtraEv~Dv~-nav~~G~D 342 (419)
+-++.-||=- .++.+...=...|.. .++. +.|||+ |+-+..-- ....--|.-+..++ .|+..|+|
T Consensus 157 Gn~~vilcERG~~---fgy~~~~~D~~~ip~-mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaD 232 (281)
T PRK12457 157 GNDRVILCERGSS---FGYDNLVVDMLGFRQ-MKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLA 232 (281)
T ss_pred CCCeEEEEeCCCC---CCCCCcccchHHHHH-HHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 5666677742 355544333333333 3443 999998 76321000 00122344455554 67889999
Q ss_pred eEEe
Q 014746 343 AILL 346 (419)
Q Consensus 343 ~vmL 346 (419)
++|+
T Consensus 233 Gl~i 236 (281)
T PRK12457 233 GLFL 236 (281)
T ss_pred EEEE
Confidence 9999
No 474
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=27.59 E-value=8.2e+02 Score=27.81 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred cCHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-----CcEEEEeCC
Q 014746 207 KDKEVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-----ADGIILARG 281 (419)
Q Consensus 207 ~D~~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-----sDgImIarg 281 (419)
.|..++. .+.|+| |-++ +..-.+..+|+.+. .+..|=+-..|.+-++.+..-... +|.+.+|+=
T Consensus 69 nd~~~la---~~~~~d-VHlg--~~dl~~~~~r~~~~-----~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpv 137 (755)
T PRK09517 69 NDRLDVA---VELGLH-VHIG--QGDTPYTQARRLLP-----AHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPV 137 (755)
T ss_pred eChHHHH---HHcCCC-eecC--CCcCCHHHHHHhcC-----CCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCc
Q ss_pred -------CccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCC
Q 014746 282 -------NLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRG 353 (419)
Q Consensus 282 -------DLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G 353 (419)
+...-+|++.+. ++...+++.++||+. .. =...++..+...|+|++...+.--.=
T Consensus 138 f~T~tK~~~~~~lG~~~l~----~~~~~~~~~~iPv~AiGG-------------I~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 138 ASTATKPDAPPALGVDGIA----EIAAVAQDHGIASVAIGG-------------VGLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred cccCCCCCCCCCCCHHHHH----HHHHhcCcCCCCEEEECC-------------CCHHHHHHHHHcCCCEEEEehHhhCC
Q ss_pred CCHHHHHHHHHHHHHH
Q 014746 354 LYPVETISIVGKICAE 369 (419)
Q Consensus 354 ~yP~eaV~~~~~I~~~ 369 (419)
..|.++++-+.+.+..
T Consensus 201 ~d~~~a~~~l~~~~~~ 216 (755)
T PRK09517 201 ANPAAAARELRTAFQP 216 (755)
T ss_pred CCHHHHHHHHHHHHHH
No 475
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=27.53 E-value=6.4e+02 Score=25.26 Aligned_cols=146 Identities=12% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-
Q 014746 235 VRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV- 312 (419)
Q Consensus 235 v~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~- 312 (419)
...++.+..+.. ++|...+.....++.+..=++. .+-||+. |-.+++++=-..-+++++.|+++|..|=-
T Consensus 63 ~~~~~~~a~~~~----VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~evv~~Ah~~gv~VEaE 134 (286)
T PRK12738 63 YALCSAYSTTYN----MPLALHLDHHESLDDIRRKVHAGVRSAMID----GSHFPFAENVKLVKSVVDFCHSQDCSVEAE 134 (286)
T ss_pred HHHHHHHHHHCC----CCEEEECCCCCCHHHHHHHHHcCCCeEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Q ss_pred EccccccccC-CCcc----hhhHhHHHHHHHc-CCceEEecccccCCCC---HHHHHHHHHHHHHHHhc------CCcCh
Q 014746 313 TRVVDSMTDN-LRPT----RAEATDVANAVLD-GSDAILLGAETLRGLY---PVETISIVGKICAEAKT------TNATS 377 (419)
Q Consensus 313 TqmLeSM~~~-~~Pt----raEv~Dv~nav~~-G~D~vmLs~ETa~G~y---P~eaV~~~~~I~~~aE~------~~~~~ 377 (419)
=..+..=... ..-. .....+...|+.. |+|++=.|--|+=|.| |---...+.+|.+...- .+.-+
T Consensus 135 lG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~ 214 (286)
T PRK12738 135 LGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVP 214 (286)
T ss_pred EEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCC
Q ss_pred HHHHHHHHHHH
Q 014746 378 ESALKVALDYG 388 (419)
Q Consensus 378 ~~~~~~a~~~~ 388 (419)
++.++.|++..
T Consensus 215 ~e~~~kai~~G 225 (286)
T PRK12738 215 DEFVRRTIELG 225 (286)
T ss_pred HHHHHHHHHcC
No 476
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=27.41 E-value=2.7e+02 Score=26.74 Aligned_cols=60 Identities=23% Similarity=0.250 Sum_probs=38.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEE
Q 014746 31 KIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVML 91 (419)
Q Consensus 31 kIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~ 91 (419)
.-++++-|.....+.++++.+.|+..+|+|+..+.......+...++.++ ++|.++-+..
T Consensus 71 ~g~~~~~p~~~~~~~l~~~~~~g~rGvRl~~~~~~~~~~~~~~~~~~~~~-~~gl~v~~~~ 130 (263)
T cd01311 71 RGGATVDPRTTTDAELKEMHDAGVRGVRFNFLFGGVDNKDELDEIAKRAA-ELGWHVQVYF 130 (263)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCeEEEEecccCCCCCHHHHHHHHHHHH-HcCCEEEEEe
Confidence 34455656655678999999999999999987432223333333444443 4677665543
No 477
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=27.08 E-value=2.2e+02 Score=26.95 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCc
Q 014746 43 VEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKL 86 (419)
Q Consensus 43 ~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~ 86 (419)
.+.+++++++|+..+.|.--+.+.+++.+....+++..++++.+
T Consensus 22 ~~~l~~~l~~G~~~vqLR~k~~~~~~~~~la~~l~~~~~~~~~~ 65 (211)
T PRK03512 22 VQWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYQAR 65 (211)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 46799999999999999999999999999998888887776643
No 478
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=27.04 E-value=3.1e+02 Score=27.26 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=66.0
Q ss_pred HhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHH
Q 014746 215 WGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFL 294 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~ 294 (419)
.|.+.|.- |...-|.+.+.++.+.+...+.+ .++|.++ +++.+.. .| ...
T Consensus 12 ~A~~~~ya-V~Afn~~n~e~~~avi~aAe~~~----~Pvii~~---------------------~~~~~~~-~~---~~~ 61 (281)
T PRK06806 12 KANQENYG-VGAFSVANMEMVMGAIKAAEELN----SPIILQI---------------------AEVRLNH-SP---LHL 61 (281)
T ss_pred HHHHCCce-EEEEEeCCHHHHHHHHHHHHHhC----CCEEEEc---------------------Ccchhcc-CC---hHH
Confidence 54555543 55556778888888777766543 3444433 2222211 23 334
Q ss_pred HHHHHHHHHHHcCCcEEEEccccccccCCCcchhhHhHHHHHHHcCCceEEecccccCCCCHHHHHHHHHHHHHH
Q 014746 295 FQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (419)
Q Consensus 295 ~qk~Ii~a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa~G~yP~eaV~~~~~I~~~ 369 (419)
+...+...|+++..||.+ -|+. . . ....+..|+..|++.+|+-+-+....-=++-.+-+.++|..
T Consensus 62 ~~~~~~~~a~~~~vpv~l--HlDH---~--~---~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~ 126 (281)
T PRK06806 62 IGPLMVAAAKQAKVPVAV--HFDH---G--M---TFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQ 126 (281)
T ss_pred HHHHHHHHHHHCCCCEEE--ECCC---C--C---CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 455666788899999988 1111 1 1 34567789999999999975554333333333344444443
No 479
>PRK12677 xylose isomerase; Provisional
Probab=26.98 E-value=7.3e+02 Score=25.77 Aligned_cols=156 Identities=13% Similarity=0.056 Sum_probs=81.5
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEec---C-------CCHHHHHHHHHHHHhcCCCCCceEEE-Eec--------------
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSH---T-------RGAEDVRHARDFLSQLGDLGQTQIFA-KIE-------------- 258 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsf---V-------~saedv~~v~~~l~~~~~~~~~~Iia-KIE-------------- 258 (419)
-+..|..+....+.+.|+++|-+.. . ++...+.++++.+.+.| +.|.+ -.+
T Consensus 28 ~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~G----L~v~~v~~n~f~~p~~~~g~lts 103 (384)
T PRK12677 28 RPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETG----LVVPMVTTNLFTHPVFKDGAFTS 103 (384)
T ss_pred CCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcC----CeeEEEecCCCCCccccCCcCCC
Confidence 3444555544477899999998762 1 11124888999998776 33221 111
Q ss_pred -----CHHhHhhHHHHHh---h--CcEEEEeCCCccCCCCc--------hhHHHHHHHHHHHHHHcC--CcEEE-Ecccc
Q 014746 259 -----NTEGLTHFDEILH---E--ADGIILARGNLGVDLPP--------EKVFLFQKAALYKCNMAG--KPAVV-TRVVD 317 (419)
Q Consensus 259 -----t~~gv~nl~eI~~---~--sDgImIargDLg~elg~--------e~v~~~qk~Ii~a~~~~g--kpvi~-TqmLe 317 (419)
...+++.+.+-++ . ++.+.+-.|--+.+++. +++...-+.+...+...| +.+.+ ..--+
T Consensus 104 ~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~e 183 (384)
T PRK12677 104 NDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNE 183 (384)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCC
Confidence 1234444433333 2 35666655533443322 122233345556666655 55444 21111
Q ss_pred ccccCCCcchhhHhHHHHHHHcCCce-EE--ecccccCCCCHHHHHHHH
Q 014746 318 SMTDNLRPTRAEATDVANAVLDGSDA-IL--LGAETLRGLYPVETISIV 363 (419)
Q Consensus 318 SM~~~~~PtraEv~Dv~nav~~G~D~-vm--Ls~ETa~G~yP~eaV~~~ 363 (419)
.+-..-.||-.+...+.+.+..+... ++ +......|..|.+++...
T Consensus 184 p~~~~~l~t~~~al~li~~lg~~~~vGv~lD~gH~~m~g~n~~~~i~~~ 232 (384)
T PRK12677 184 PRGDILLPTVGHALAFIATLEHPEMVGLNPEVGHEQMAGLNFTHGIAQA 232 (384)
T ss_pred CCCCeeeCCHHHHHHHHHHhCCCccEEEeeechHHHhcCCCHHHHHHHH
Confidence 11123467777777777777444322 44 456666788887777553
No 480
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=26.96 E-value=1.5e+02 Score=30.10 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=38.7
Q ss_pred CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-E--ccc-cccccCC---CcchhhHhHHHH
Q 014746 273 ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-T--RVV-DSMTDNL---RPTRAEATDVAN 335 (419)
Q Consensus 273 sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-T--qmL-eSM~~~~---~PtraEv~Dv~n 335 (419)
.|.+.+ -|-|-.-++ +.+..++++.||+.|+.+++ | +-| +.+..+| .|.+.|....++
T Consensus 130 ~d~Vvl-sGSlP~g~~----~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~~EL~~~~g 194 (310)
T COG1105 130 DDIVVL-SGSLPPGVP----PDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNREELEALFG 194 (310)
T ss_pred CCEEEE-eCCCCCCCC----HHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCcEEecCHHHHHHHhC
Confidence 366554 365555554 66778999999999999998 5 333 3333444 677888766553
No 481
>PLN02826 dihydroorotate dehydrogenase
Probab=26.92 E-value=2.3e+02 Score=29.90 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=22.1
Q ss_pred CCCCccCHHHHHHHhhhcCCcEEEEec
Q 014746 202 PTLTDKDKEVISTWGARNNIDFLSLSH 228 (419)
Q Consensus 202 p~lte~D~~di~~~~l~~g~d~I~lsf 228 (419)
|.+++.|..++...+.+.|+|+|.++-
T Consensus 271 Pdl~~~di~~ia~~a~~~G~dGIi~~N 297 (409)
T PLN02826 271 PDLSKEDLEDIAAVALALGIDGLIISN 297 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 466777888887678899999999985
No 482
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.84 E-value=3.2e+02 Score=27.92 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCCCCceEEEEecCHHhHhhHHHHHhhCcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 014746 237 HARDFLSQLGDLGQTQIFAKIENTEGLTHFDEILHEADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (419)
Q Consensus 237 ~v~~~l~~~~~~~~~~IiaKIEt~~gv~nl~eI~~~sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~ 312 (419)
.+++.|.+.+ ..+.|-+--+... -+|+.++++..|.|+-+-.+ +..+..+-++|+++++|.+.
T Consensus 86 ~a~~~l~~~n--p~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~----------~~~r~~~n~~c~~~~ip~v~ 148 (355)
T PRK05597 86 SAREAMLALN--PDVKVTVSVRRLT-WSNALDELRDADVILDGSDN----------FDTRHLASWAAARLGIPHVW 148 (355)
T ss_pred HHHHHHHHHC--CCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 3456666666 6666655433332 25778888888988876543 24445678899999999876
No 483
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=26.80 E-value=5.7e+02 Score=24.46 Aligned_cols=96 Identities=19% Similarity=0.296 Sum_probs=59.9
Q ss_pred HHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCCceEEEEe---------cCHHhHhhHHHH--HhhCcEEEE
Q 014746 210 EVISTWGARNNIDFLSLSHTRGAEDVRHARDFLSQLGDLGQTQIFAKI---------ENTEGLTHFDEI--LHEADGIIL 278 (419)
Q Consensus 210 ~di~~~~l~~g~d~I~lsfV~saedv~~v~~~l~~~~~~~~~~IiaKI---------Et~~gv~nl~eI--~~~sDgImI 278 (419)
+.+ ..+.+.|+..++..- .+.++...+.++..+.+ ..|++-+ .+.+.++.++++ +.....+.|
T Consensus 18 ~~~-~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~----~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~~aI 91 (255)
T PF01026_consen 18 EVL-ERAREAGVSAIIIVS-TDPEDWERVLELASQYP----DRVYPALGIHPWEAHEVNEEDLEELEELINLNRPKVVAI 91 (255)
T ss_dssp HHH-HHHHHTTEEEEEEEE-SSHHHHHHHHHHHHHTT----TEEEEEE---GGGGGGHSHHHHHHHHHHHHHTSTTEEEE
T ss_pred HHH-HHHHHcCCCEEEEcC-CCHHHhHHHHHHHhcCC----CeEEEEecCCcchhhhhhHHHHHHHHHHHHhccccceee
Confidence 344 466889998886553 55567777777766533 1233322 355566777777 444566666
Q ss_pred eCCCccCCCCc--hhHHHHH----HHHHHHHHHcCCcEEE-E
Q 014746 279 ARGNLGVDLPP--EKVFLFQ----KAALYKCNMAGKPAVV-T 313 (419)
Q Consensus 279 argDLg~elg~--e~v~~~q----k~Ii~a~~~~gkpvi~-T 313 (419)
|..|.+... +.-...| ++.+..|+.+++|+++ +
T Consensus 92 --GEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~ 131 (255)
T PF01026_consen 92 --GEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHC 131 (255)
T ss_dssp --EEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred --eeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEec
Confidence 555555521 2223455 4577889999999999 7
No 484
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=26.78 E-value=2e+02 Score=27.90 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=29.1
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHHH
Q 014746 29 MTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTAY 68 (419)
Q Consensus 29 ~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e~ 68 (419)
.+|+.+-+=|...+.+-++...++|++.+|+-++-.....
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~~~ 113 (263)
T cd07943 74 QAKLGVLLLPGIGTVDDLKMAADLGVDVVRVATHCTEADV 113 (263)
T ss_pred CCEEEEEecCCccCHHHHHHHHHcCCCEEEEEechhhHHH
Confidence 5777655435555678899999999999999776655443
No 485
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=26.73 E-value=1.7e+02 Score=26.72 Aligned_cols=89 Identities=19% Similarity=0.090 Sum_probs=54.4
Q ss_pred CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEeccccc
Q 014746 273 ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETL 351 (419)
Q Consensus 273 sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmLs~ETa 351 (419)
.|.+||=-++ |...+..--+.=++.|+++|+|+++ -= . .-.+.....+|+....+.+..+...++|--|+.
T Consensus 23 ~~fviikate-----G~~~~D~~f~~n~~~a~~aGl~vG~Yhf-~--~~~~~~~a~~eA~~f~~~~~~~~~~~~lD~E~~ 94 (177)
T cd06523 23 LDLVIIRVQY-----GSNYVDLKYKNNIKEFKKRGIPFGVYAF-A--RGTSTADAKAEARDFYNRANKKPTFYVLDVEVT 94 (177)
T ss_pred CCEEEEEEeC-----CCcccCHHHHHHHHHHHHcCCCeEEEEE-e--ccCCHHHHHHHHHHHHHHhcCCCceEEEeeccC
Confidence 3666664333 2222333334456789999999987 21 1 111223455667766666655456688988986
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q 014746 352 RGLYPVETISIVGKICAEAKT 372 (419)
Q Consensus 352 ~G~yP~eaV~~~~~I~~~aE~ 372 (419)
.+ -+..+.+...|.+.|+
T Consensus 95 ~~---~~~~~~~~~f~~~v~~ 112 (177)
T cd06523 95 SM---SDMNAGVQAFISELRR 112 (177)
T ss_pred Cc---chHHHHHHHHHHHHHH
Confidence 55 4556777888888887
No 486
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=26.65 E-value=3e+02 Score=27.99 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=43.9
Q ss_pred cccccccCCCCCCCCCCCeEEEEecCCCCCCHH----HHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCce
Q 014746 12 IRMASILEPSKPTFFPAMTKIVGTLGPRSRSVE----IISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLC 87 (419)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~tkIi~TiGp~~~~~~----~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i 87 (419)
.++.++|+.. ..+....+|+|....+++ ..+++++.|.+.+.+.+. .+++ +-++.+|.+.+..|..+
T Consensus 113 ~Pv~~LLGg~-----~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~Gf~~~Kikvg-~~~~---~d~~~v~~vRe~~G~~~ 183 (352)
T cd03328 113 LPLARLLGRA-----HDSVPVYGSGGFTSYDDDRLREQLSGWVAQGIPRVKMKIG-RDPR---RDPDRVAAARRAIGPDA 183 (352)
T ss_pred CcHHHHhcCC-----CCCeEEEEecCCCCCCHHHHHHHHHHHHHCCCCEEEeecC-CCHH---HHHHHHHHHHHHcCCCC
Confidence 3456666541 134566677664333333 456677899999999874 2343 44455555545566556
Q ss_pred EEEEecC
Q 014746 88 AVMLDTI 94 (419)
Q Consensus 88 ~Il~Dl~ 94 (419)
.+++|--
T Consensus 184 ~l~vDaN 190 (352)
T cd03328 184 ELFVDAN 190 (352)
T ss_pred eEEEECC
Confidence 7777754
No 487
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=26.38 E-value=6.6e+02 Score=25.10 Aligned_cols=168 Identities=11% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCHHH---HHHHHHHHHhcCCCC--CceEEEEecCHHhHhhHHHHHhh-CcEEEEeCCC
Q 014746 209 KEVISTWGARNNIDFLSLSHTRGAED---VRHARDFLSQLGDLG--QTQIFAKIENTEGLTHFDEILHE-ADGIILARGN 282 (419)
Q Consensus 209 ~~di~~~~l~~g~d~I~lsfV~saed---v~~v~~~l~~~~~~~--~~~IiaKIEt~~gv~nl~eI~~~-sDgImIargD 282 (419)
+.-|+ .|-+.+...|+.-.-...+. ...+..++...-... .++|...+-....++.+.+=++. .+-||+.
T Consensus 32 ~avi~-AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD--- 107 (288)
T TIGR00167 32 NAVLE-AAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMID--- 107 (288)
T ss_pred HHHHH-HHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEec---
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHcCCcEEE--Ecc-----------ccccccCCCcchhhHhHHHHHHHc-CCceEEecc
Q 014746 283 LGVDLPPEKVFLFQKAALYKCNMAGKPAVV--TRV-----------VDSMTDNLRPTRAEATDVANAVLD-GSDAILLGA 348 (419)
Q Consensus 283 Lg~elg~e~v~~~qk~Ii~a~~~~gkpvi~--Tqm-----------LeSM~~~~~PtraEv~Dv~nav~~-G~D~vmLs~ 348 (419)
|-.+++++=-..-++++..|++.|.+|=. .++ -+++-.+|. +...|+.. |+|++-.|-
T Consensus 108 -gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~pe-------ea~~Fv~~TgvD~LAvai 179 (288)
T TIGR00167 108 -GSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPE-------EAKEFVKLTGVDSLAAAI 179 (288)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHH-------HHHHHHhccCCcEEeecc
Q ss_pred cccCCCC---HH-HHHHHHHHHHHHHhc------CCcChHHHHHHHHHHH
Q 014746 349 ETLRGLY---PV-ETISIVGKICAEAKT------TNATSESALKVALDYG 388 (419)
Q Consensus 349 ETa~G~y---P~-eaV~~~~~I~~~aE~------~~~~~~~~~~~a~~~~ 388 (419)
-|+=|.| |. --...+++|-+...- .+.-+++.++.|++.+
T Consensus 180 Gt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~G 229 (288)
T TIGR00167 180 GNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLG 229 (288)
T ss_pred CccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC
No 488
>PRK02999 malate synthase G; Provisional
Probab=26.29 E-value=1.1e+02 Score=34.20 Aligned_cols=126 Identities=11% Similarity=0.158 Sum_probs=78.3
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhc----CC-CCCceEEEEecCHHhHhhHHHHHhhC-c-EEEE--eCCCccC----
Q 014746 219 NNIDFLSLSHTRGAEDVRHARDFLSQL----GD-LGQTQIFAKIENTEGLTHFDEILHEA-D-GIIL--ARGNLGV---- 285 (419)
Q Consensus 219 ~g~d~I~lsfV~saedv~~v~~~l~~~----~~-~~~~~IiaKIEt~~gv~nl~eI~~~s-D-gImI--argDLg~---- 285 (419)
.|.-|+.+|+.+++++++-..+++... |. ...+++-.+|||..+--|++||+.+. | .++| ||=|..-
T Consensus 388 ~GsiY~ykPKmegp~Ea~fwndlF~~~E~~LGLp~gTIK~~VmiEe~ras~nL~eii~elr~rv~fiNtGrwDytfseIh 467 (726)
T PRK02999 388 TGSVYIVKPKMHGPEEVAFANELFGRVEDLLGLPRNTLKVGIMDEERRTSVNLKACIRAAKDRVVFINTGFLDRTGDEIH 467 (726)
T ss_pred CCCeeEEecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeeccHhHhhHHHHHHHHHhheeecccCchhhhhhHHH
Confidence 356699999999999999887766432 22 23578999999999999999999874 2 2222 2222111
Q ss_pred -------------CCCchhHHHHHHHHHHH---HHHcCCcEEEEccccccccCCCcchhhHhHHH----HHHHcCCceEE
Q 014746 286 -------------DLPPEKVFLFQKAALYK---CNMAGKPAVVTRVVDSMTDNLRPTRAEATDVA----NAVLDGSDAIL 345 (419)
Q Consensus 286 -------------elg~e~v~~~qk~Ii~a---~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv~----nav~~G~D~vm 345 (419)
-+..+-+....+..+.. |...|+..|--.| -- .|. .+.++. .-...|+||-+
T Consensus 468 t~~~ag~~vRk~~~mt~p~m~AYe~~nV~~gL~Ch~rG~aaIGkGM----wA--iPd--~ma~m~~dK~~e~~aGadgaW 539 (726)
T PRK02999 468 TSMEAGPMVRKGDMKSSPWIAAYEDNNVDIGLACGLRGRAQIGKGM----WA--MPD--LMADMLEQKIAHPKAGANTAW 539 (726)
T ss_pred HhhhccCcCccccccccHHHHHHHHHHHHHHHhcCCCChhhhcCCh----hh--chH--HHHHHHHHHhccccCCCCccC
Confidence 11112344555667777 9988888764122 11 333 222222 33567888877
Q ss_pred ecccccC
Q 014746 346 LGAETLR 352 (419)
Q Consensus 346 Ls~ETa~ 352 (419)
...=|+.
T Consensus 540 VpsPtla 546 (726)
T PRK02999 540 VPSPTAA 546 (726)
T ss_pred CCCcchh
Confidence 7555443
No 489
>TIGR01345 malate_syn_G malate synthase G. This model describes the G isozyme of malate synthase. Isocitrate synthase and malate synthase form the glyoxylate shunt, which generates additional TCA cycle intermediates.
Probab=26.22 E-value=1.2e+02 Score=34.13 Aligned_cols=132 Identities=11% Similarity=0.185 Sum_probs=83.3
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhc----CC-CCCceEEEEecCHHhHhhHHHHHhhC-c-EEEE--eCCCccCC---
Q 014746 219 NNIDFLSLSHTRGAEDVRHARDFLSQL----GD-LGQTQIFAKIENTEGLTHFDEILHEA-D-GIIL--ARGNLGVD--- 286 (419)
Q Consensus 219 ~g~d~I~lsfV~saedv~~v~~~l~~~----~~-~~~~~IiaKIEt~~gv~nl~eI~~~s-D-gImI--argDLg~e--- 286 (419)
.|.-||..|+.+++++++--.++.... |. ...+++-.+|||..+--|++||+.+. | .++| ||=|..-+
T Consensus 385 ~GsiY~ykPKmhgp~EaafwndlF~~~Ed~LGLp~gTIK~gVmdEerras~nL~EcI~elrdrv~fiNtGfwDytfseIh 464 (721)
T TIGR01345 385 KGSVYIVKPKMHGPEEVAFANKLFTRIEDMLGLARHTLKMGVMDEERRTSLNLRACIAQVRNRVAFINTGFLDRTGDEIH 464 (721)
T ss_pred CCCeeEEecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEEeccHhHhhHHHHHHHHHhheeecccCchhhhhhHHH
Confidence 466699999999999999887766432 22 23578999999999999999999874 3 2222 22221111
Q ss_pred --------------CCchhHHHHHHHHHH---HHHHcCCcEEEEccccccccCCCcchhhHhHH----HHHHHcCCceEE
Q 014746 287 --------------LPPEKVFLFQKAALY---KCNMAGKPAVVTRVVDSMTDNLRPTRAEATDV----ANAVLDGSDAIL 345 (419)
Q Consensus 287 --------------lg~e~v~~~qk~Ii~---a~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv----~nav~~G~D~vm 345 (419)
+..+-+....+..+. .|...|+..|--. |-- .|. .+.++ ..-...|+||-+
T Consensus 465 t~~~ag~~vRk~~mm~~pwm~AYe~~nV~~gl~Ch~rG~aaIGkG----MwA--~Pd--ama~m~~dK~~e~~aGadgaW 536 (721)
T TIGR01345 465 TSMEAGPMLRKNDMKSTPWIKAYERNNVLAGLFCGLRGKAQIGKG----MWA--MPD--LMAEMYEQKGDQLRAGANTAW 536 (721)
T ss_pred HHhhcCCccchhcccccHHHHHHHHHHhHHhHhcCCCCchhcCCC----ccc--CcH--HHHHHHHHHhhhhhcCCCccC
Confidence 111234444466777 8999998877412 222 242 22222 245668999988
Q ss_pred ecccccCCCCHHHHHH
Q 014746 346 LGAETLRGLYPVETIS 361 (419)
Q Consensus 346 Ls~ETa~G~yP~eaV~ 361 (419)
...=|+. |+++..
T Consensus 537 VpsPtla---tlhafh 549 (721)
T TIGR01345 537 VPSPTAA---TLHALH 549 (721)
T ss_pred CCCcccc---cHHHHH
Confidence 8766665 445543
No 490
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=26.18 E-value=5.2e+02 Score=23.91 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhcC--C---cChHHHHHHHHHHHHHCCCCCCCCEEE
Q 014746 357 VETISIVGKICAEAKTT--N---ATSESALKVALDYGKAHGVIKSHDRVV 401 (419)
Q Consensus 357 ~eaV~~~~~I~~~aE~~--~---~~~~~~~~~a~~~~~~~~~~~~gd~vv 401 (419)
.++-+.+.+++.+-... . ...+.+...++..++++|+- +|.-+
T Consensus 166 ~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~--~di~i 213 (273)
T cd06305 166 QDAAAQVEAVLKKYPKGGIDAIWAAWDEFAKGAKQALDEAGRT--DEIKI 213 (273)
T ss_pred hHHHHHHHHHHHHCCCcccCeEEEcChhhhHHHHHHHHHcCCC--CCceE
Confidence 34455555555432112 1 23355556677788888873 45433
No 491
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=26.11 E-value=4.9e+02 Score=24.09 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCcEEE-EccccccccCCCcchhhHhHHHHHHHcCCceEEe
Q 014746 295 FQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (419)
Q Consensus 295 ~qk~Ii~a~~~~gkpvi~-TqmLeSM~~~~~PtraEv~Dv~nav~~G~D~vmL 346 (419)
+....+..|+++|+++.+ |- + ...+...+...|+|+++-
T Consensus 187 ~~~~~v~~~~~~g~~v~~wTv------n-------~~~~~~~~~~~gVdgiiT 226 (229)
T cd08562 187 LTEEQVKALKDAGYKLLVYTV------N-------DPARAAELLEWGVDAIFT 226 (229)
T ss_pred CCHHHHHHHHHCCCEEEEEeC------C-------CHHHHHHHHHCCCCEEEc
Confidence 346799999999999998 73 1 124556778889999864
No 492
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.06 E-value=2.3e+02 Score=25.01 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=25.9
Q ss_pred HHhhhcCCcEEEEec--CCCHHHHHHHHHHHHhcC
Q 014746 214 TWGARNNIDFLSLSH--TRGAEDVRHARDFLSQLG 246 (419)
Q Consensus 214 ~~~l~~g~d~I~lsf--V~saedv~~v~~~l~~~~ 246 (419)
+.+.+.++|.|.+|- ..+.+.++++.+.|++++
T Consensus 44 ~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~g 78 (128)
T cd02072 44 DAAIETDADAILVSSLYGHGEIDCKGLREKCDEAG 78 (128)
T ss_pred HHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCC
Confidence 366788999999987 566777888888887766
No 493
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.05 E-value=2.2e+02 Score=29.04 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=29.4
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccCCCHH
Q 014746 28 AMTKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSWGDTA 67 (419)
Q Consensus 28 ~~tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SHg~~e 67 (419)
+++|+.+-+=|...+.+-++...++|++.+|+-++-...+
T Consensus 75 ~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~d 114 (333)
T TIGR03217 75 KRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTEAD 114 (333)
T ss_pred CCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEeccchHH
Confidence 4577766555655677889999999999999977433333
No 494
>PLN02389 biotin synthase
Probab=26.05 E-value=1.8e+02 Score=30.33 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=39.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHHcCCCEEEEeccC-----C---CHHHHHHHHHHHHHHHHhcCCce--EEEEec
Q 014746 30 TKIVGTLGPRSRSVEIISGCLNAGMSVARFDFSW-----G---DTAYHQETLENLKIAIKSTKKLC--AVMLDT 93 (419)
Q Consensus 30 tkIi~TiGp~~~~~~~i~~li~~Gm~v~RiN~SH-----g---~~e~~~~~i~~ir~a~~~~~~~i--~Il~Dl 93 (419)
..|.+|.|+ .+.+.+++|.++|++.+-+|+-= . +...|.++++.++.+.+ .|.++ .+++-+
T Consensus 167 l~i~~s~G~--l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~-~Gi~v~sg~IiGl 237 (379)
T PLN02389 167 MEVCCTLGM--LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVRE-AGISVCSGGIIGL 237 (379)
T ss_pred cEEEECCCC--CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHH-cCCeEeEEEEECC
Confidence 357788886 47889999999999988777761 0 11245566666666643 45433 444444
No 495
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=25.93 E-value=1.5e+02 Score=28.93 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCEEEEec-cC------CCH-HHHHHHHHHHHHHHHhcCCceEEEEecCCCeE
Q 014746 43 VEIISGCLNAGMSVARFDF-SW------GDT-AYHQETLENLKIAIKSTKKLCAVMLDTIGPEL 98 (419)
Q Consensus 43 ~~~i~~li~~Gm~v~RiN~-SH------g~~-e~~~~~i~~ir~a~~~~~~~i~Il~Dl~GPkI 98 (419)
.+..++++++|+++.=+|+ |- -+. +++.++...++.+.+..+ +.|.+|+.-|+.
T Consensus 26 ~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~--~plsiDT~~~~v 87 (257)
T TIGR01496 26 VAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPD--VPISVDTYRAEV 87 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC--CeEEEeCCCHHH
Confidence 3566778999999999984 22 133 356666666676655455 457899987764
No 496
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=25.82 E-value=6.2e+02 Score=24.56 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCccCHHHHHHHhhhcCCcEEEEecC---------C----CHHHHHHHHHHHHhcCCCCCceEEEEecCH------HhHh
Q 014746 204 LTDKDKEVISTWGARNNIDFLSLSHT---------R----GAEDVRHARDFLSQLGDLGQTQIFAKIENT------EGLT 264 (419)
Q Consensus 204 lte~D~~di~~~~l~~g~d~I~lsfV---------~----saedv~~v~~~l~~~~~~~~~~IiaKIEt~------~gv~ 264 (419)
++-+|.---+ .+-+.|+|.|.+|=- . +.+++....+.+.+.- ..++|++=+|+- ++++
T Consensus 17 ~~ayD~~sA~-i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~--~~~pviaD~~~G~g~~~~~~~~ 93 (240)
T cd06556 17 LTAYDYSMAK-QFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA--PLALIVADLPFGAYGAPTAAFE 93 (240)
T ss_pred ecCCCHHHHH-HHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC--CCCCEEEeCCCCCCcCHHHHHH
Confidence 3566666554 556778888887621 0 1122222222222221 346889988764 5566
Q ss_pred hHHHHHhh-CcEEEEeCCCccCCCCchhHHHHHHHHHHHHHHcCCcEEE-Ecccccccc-------CCC--cchhh-HhH
Q 014746 265 HFDEILHE-ADGIILARGNLGVDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTD-------NLR--PTRAE-ATD 332 (419)
Q Consensus 265 nl~eI~~~-sDgImIargDLg~elg~e~v~~~qk~Ii~a~~~~gkpvi~-TqmLeSM~~-------~~~--PtraE-v~D 332 (419)
|..+++++ ++||-|-=+. -+...+++.++++.|++- |...-+... ..+ ....| +.+
T Consensus 94 ~~~~l~~aGa~gv~iED~~------------~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~R 161 (240)
T cd06556 94 LAKTFMRAGAAGVKIEGGE------------WHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIAD 161 (240)
T ss_pred HHHHHHHcCCcEEEEcCcH------------HHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHH
Confidence 67777775 5888884331 123356777888899888 875332111 011 11222 344
Q ss_pred HHHHHHcCCceEEec
Q 014746 333 VANAVLDGSDAILLG 347 (419)
Q Consensus 333 v~nav~~G~D~vmLs 347 (419)
.-.+...|+|++++-
T Consensus 162 a~ay~~AGAd~i~~e 176 (240)
T cd06556 162 ALAYAPAGADLIVME 176 (240)
T ss_pred HHHHHHcCCCEEEEc
Confidence 456667899999994
No 497
>PF10930 DUF2737: Protein of unknown function (DUF2737); InterPro: IPR020295 The proteins in this entry are uncharacterised.
Probab=25.80 E-value=24 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=18.4
Q ss_pred cEEE-EccccccccCCCcchhhHh
Q 014746 309 PAVV-TRVVDSMTDNLRPTRAEAT 331 (419)
Q Consensus 309 pvi~-TqmLeSM~~~~~PtraEv~ 331 (419)
|-|. |.+.-.+...|.|||.|.-
T Consensus 8 p~i~~~e~v~r~r~~PmPsREELl 31 (54)
T PF10930_consen 8 PDILPTELVIRQRFKPMPSREELL 31 (54)
T ss_pred cchhHHHHHHHhcCCCCCCHHHHH
Confidence 5566 7777777889999999973
No 498
>PRK05269 transaldolase B; Provisional
Probab=25.79 E-value=1.8e+02 Score=29.56 Aligned_cols=20 Identities=15% Similarity=-0.002 Sum_probs=13.7
Q ss_pred HhhhcCCcEEEEecCCCHHHH
Q 014746 215 WGARNNIDFLSLSHTRGAEDV 235 (419)
Q Consensus 215 ~~l~~g~d~I~lsfV~saedv 235 (419)
.+.+.|+++|. |||..-.|.
T Consensus 166 ~aa~AGa~~IS-PfVgRi~d~ 185 (318)
T PRK05269 166 ACAEAGVFLIS-PFVGRILDW 185 (318)
T ss_pred HHHHcCCCEEE-eeccHHHHH
Confidence 34677887555 888887664
No 499
>cd00728 malate_synt_G Malate synthase G (MSG), monomeric enzyme present in some bacteria. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=25.78 E-value=1.2e+02 Score=34.02 Aligned_cols=126 Identities=13% Similarity=0.164 Sum_probs=80.4
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHHHhc----CC-CCCceEEEEecCHHhHhhHHHHHhhC-c-EEEE--eCCCccCC---
Q 014746 219 NNIDFLSLSHTRGAEDVRHARDFLSQL----GD-LGQTQIFAKIENTEGLTHFDEILHEA-D-GIIL--ARGNLGVD--- 286 (419)
Q Consensus 219 ~g~d~I~lsfV~saedv~~v~~~l~~~----~~-~~~~~IiaKIEt~~gv~nl~eI~~~s-D-gImI--argDLg~e--- 286 (419)
.|.-|+.+|+.+++++++--.++.... |. ...+++-.+|||..+--|++||+.+. | .++| ||=|..-+
T Consensus 380 ~GsiYfykPKmegp~Ea~fwndlF~~~Ed~LGLp~gTIKa~VmiEe~~asfnl~Eii~elrdrv~fiNtGrwDytfs~I~ 459 (712)
T cd00728 380 TGSIYIVKPKMHGPEEVAFANELFSRVEDLLGLPQNTIKMGIMDEERRTSVNLKECIRAARDRVVFINTGFLDRTGDEIH 459 (712)
T ss_pred CCCeeEEecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeeccHhhhhHHHHHHHHHhheeecccCchhhhhhHHH
Confidence 466699999999999999887766432 22 23578999999999999999999874 3 2222 33332111
Q ss_pred --------------CCchhHHHHHHHHHHH---HHHcCCcEEEEccccccccCCCcchhhHhHH----HHHHHcCCceEE
Q 014746 287 --------------LPPEKVFLFQKAALYK---CNMAGKPAVVTRVVDSMTDNLRPTRAEATDV----ANAVLDGSDAIL 345 (419)
Q Consensus 287 --------------lg~e~v~~~qk~Ii~a---~~~~gkpvi~TqmLeSM~~~~~PtraEv~Dv----~nav~~G~D~vm 345 (419)
+..+-+....+..+.. |...|+..|--.| -- .|.+ +.++ ..-...|+||-+
T Consensus 460 t~~~ag~~v~k~~~m~~p~m~AYe~~nV~~gl~Ch~rG~aaIGkGM----wA--iPd~--ma~m~~dK~~e~~aGadgaW 531 (712)
T cd00728 460 TSMEAGPMARKADMKSSPWIGAYEDNNVDIGLAAGLSGKAQIGKGM----WA--MPDL--MADMMEQKIAHPKAGANTAW 531 (712)
T ss_pred HHhhCccchhhhcccccHHHHHHHHHHHHHhHhhcCCCchhhcCCh----hh--chHH--HHHHHHHHhccccCCCCccC
Confidence 1112344445667777 9999888774122 11 4543 2222 233567888887
Q ss_pred ecccccC
Q 014746 346 LGAETLR 352 (419)
Q Consensus 346 Ls~ETa~ 352 (419)
...=|+.
T Consensus 532 VpsPtla 538 (712)
T cd00728 532 VPSPTAA 538 (712)
T ss_pred CCCCccc
Confidence 7655554
No 500
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=25.74 E-value=93 Score=34.24 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=39.5
Q ss_pred CHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHHHHhcCCceEEEEecC
Q 014746 42 SVEIISGCLNAGMSVARFDFSWGDTAYHQETLENLKIAIKSTKKLCAVMLDTI 94 (419)
Q Consensus 42 ~~~~i~~li~~Gm~v~RiN~SHg~~e~~~~~i~~ir~a~~~~~~~i~Il~Dl~ 94 (419)
+.+.+.+|.++|+++.|+-.- + ....+.+.+||+.-...|.+++++.|+.
T Consensus 47 tv~Qi~~L~~aGceiVRvtvp--~-~~~A~al~~I~~~L~~~g~~iPLVADIH 96 (606)
T PRK00694 47 TVRQICALQEWGCDIVRVTVQ--G-LKEAQACEHIKERLIQQGISIPLVADIH 96 (606)
T ss_pred HHHHHHHHHHcCCCEEEEcCC--C-HHHHHhHHHHHHHHhccCCCCCEEeecC
Confidence 477899999999999997653 2 3345677788877667788999999985
Done!