Query 014747
Match_columns 419
No_of_seqs 165 out of 249
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xze_A STAM-binding protein; h 99.9 7.5E-28 2.6E-32 215.5 12.1 110 5-114 13-123 (146)
2 2a9u_A Ubiquitin carboxyl-term 99.9 7.9E-24 2.7E-28 189.0 10.9 104 8-114 20-125 (144)
3 2og4_A PRE-mRNA-splicing facto 99.8 2.4E-22 8.3E-27 193.1 2.0 79 332-414 37-118 (254)
4 3rzv_A STAM-binding protein; u 99.8 6.7E-21 2.3E-25 179.8 5.7 83 332-414 41-123 (211)
5 2p8r_A PRP8, PRE-mRNA-splicing 99.8 4.6E-20 1.6E-24 178.9 3.0 77 332-414 38-117 (273)
6 2znr_A AMSH-like protease; met 99.7 9.6E-18 3.3E-22 154.3 5.6 83 332-414 8-90 (178)
7 3sbg_A PRE-mRNA-splicing facto 99.6 7.9E-17 2.7E-21 166.5 2.4 77 332-414 348-429 (565)
8 2kks_A Uncharacterized protein 98.6 6.5E-08 2.2E-12 85.4 7.2 77 335-414 2-82 (146)
9 2kcq_A MOV34/MPN/PAD-1 family; 98.5 1.7E-07 5.8E-12 83.3 6.0 77 335-414 1-84 (153)
10 1oi0_A AF2198, hypothetical pr 97.5 9.2E-05 3.1E-09 63.3 5.0 66 335-414 4-71 (124)
11 4b4t_V 26S proteasome regulato 97.4 0.00019 6.6E-09 70.8 6.4 82 332-415 24-111 (306)
12 2cpt_A SKD1 protein, vacuolar 97.1 0.0026 8.8E-08 54.5 9.4 76 23-102 8-84 (117)
13 4a5x_A MITD1, MIT domain-conta 97.0 0.0036 1.2E-07 50.8 9.1 69 30-103 14-82 (86)
14 1wfd_A Hypothetical protein 15 97.0 0.0048 1.6E-07 50.6 9.8 72 28-104 11-82 (93)
15 2v6x_A Vacuolar protein sortin 96.8 0.0061 2.1E-07 48.9 9.1 76 24-104 5-80 (85)
16 2w2u_A Hypothetical P60 katani 96.6 0.0039 1.3E-07 50.3 6.4 72 24-100 11-82 (83)
17 2v6y_A AAA family ATPase, P60 96.4 0.0056 1.9E-07 49.2 5.9 69 28-101 7-75 (83)
18 2ymb_A MITD1, MIT domain-conta 95.2 0.0032 1.1E-07 60.9 0.0 73 28-105 19-91 (257)
19 2o95_A 26S proteasome non-ATPa 92.1 0.29 1E-05 44.1 6.9 83 332-414 7-98 (187)
20 2zan_A Vacuolar protein sortin 87.9 0.099 3.4E-06 53.3 0.0 75 26-104 5-79 (444)
21 4e0q_A COP9 signalosome comple 68.6 9.4 0.00032 33.0 6.2 82 333-415 6-95 (141)
22 2rpa_A Katanin P60 ATPase-cont 60.8 31 0.0011 27.2 7.3 63 32-99 12-74 (78)
23 4b4t_U RPN8, 26S proteasome re 56.4 14 0.00048 36.4 5.7 58 358-415 32-96 (338)
24 3qwp_A SET and MYND domain-con 46.0 42 0.0014 33.7 7.3 43 31-73 370-413 (429)
25 1wol_A ST0689, 122AA long cons 44.9 42 0.0014 27.4 6.1 37 25-61 4-40 (122)
26 1ufb_A TT1696 protein; structu 42.4 45 0.0016 27.3 5.9 38 25-62 4-41 (127)
27 3n71_A Histone lysine methyltr 41.6 71 0.0024 32.7 8.4 43 31-73 392-435 (490)
28 1a17_A Serine/threonine protei 38.7 54 0.0019 25.8 5.7 37 25-61 6-42 (166)
29 2hsb_A Hypothetical UPF0332 pr 37.0 77 0.0026 25.7 6.4 27 25-51 5-31 (126)
30 3ffl_A Anaphase-promoting comp 32.7 1E+02 0.0035 27.6 6.9 38 33-71 64-101 (167)
31 3rkv_A Putative peptidylprolyl 31.4 55 0.0019 26.5 4.6 36 29-64 8-43 (162)
32 1elr_A TPR2A-domain of HOP; HO 31.3 78 0.0027 23.4 5.2 31 31-61 3-33 (131)
33 3upv_A Heat shock protein STI1 30.9 77 0.0026 24.2 5.2 31 31-61 3-33 (126)
34 2dl1_A Spartin; SPG20, MIT, st 30.7 2.4E+02 0.0083 23.8 9.9 44 24-67 14-57 (116)
35 3sz7_A HSC70 cochaperone (SGT) 30.6 1.5E+02 0.0053 23.7 7.4 29 33-61 46-74 (164)
36 3iqc_A FLIS, flagellar protein 29.4 2.2E+02 0.0077 24.0 8.3 84 28-112 32-126 (131)
37 2v5f_A Prolyl 4-hydroxylase su 29.3 1E+02 0.0035 23.7 5.8 33 36-72 50-82 (104)
38 1elw_A TPR1-domain of HOP; HOP 29.2 87 0.003 22.6 5.1 31 31-61 3-33 (118)
39 2l6j_A TPR repeat-containing p 28.2 81 0.0028 23.0 4.7 31 31-61 3-33 (111)
40 3qwp_A SET and MYND domain-con 27.4 98 0.0033 30.9 6.5 43 31-73 328-371 (429)
41 2vgx_A Chaperone SYCD; alterna 27.4 1.7E+02 0.0059 23.6 7.1 34 35-72 58-91 (148)
42 2xcb_A PCRH, regulatory protei 27.3 1.6E+02 0.0056 23.1 6.8 34 35-72 55-88 (142)
43 2xev_A YBGF; tetratricopeptide 27.2 1.7E+02 0.0059 21.8 6.7 55 31-104 75-129 (129)
44 3o10_A Sacsin; all-helical dom 27.1 52 0.0018 28.1 3.8 40 25-64 9-48 (141)
45 3qww_A SET and MYND domain-con 27.0 1E+02 0.0034 31.0 6.5 43 31-73 339-382 (433)
46 2jpu_A ORF C02003 protein; sol 26.7 46 0.0016 28.6 3.4 40 29-68 4-43 (129)
47 4gcn_A Protein STI-1; structur 26.2 1.1E+02 0.0039 24.0 5.6 34 28-61 79-112 (127)
48 1puc_A P13SUC1, P13; cell cycl 25.7 22 0.00075 29.7 1.1 48 366-416 29-86 (105)
49 3n71_A Histone lysine methyltr 25.1 1.1E+02 0.0038 31.2 6.6 43 31-73 350-393 (490)
50 3rkv_A Putative peptidylprolyl 25.0 96 0.0033 25.0 5.0 30 32-61 63-92 (162)
51 3q49_B STIP1 homology and U bo 24.9 99 0.0034 23.5 4.9 30 32-61 9-38 (137)
52 3sz7_A HSC70 cochaperone (SGT) 24.8 1E+02 0.0036 24.8 5.2 31 31-61 10-40 (164)
53 2hr2_A Hypothetical protein; a 24.2 1.1E+02 0.0038 26.7 5.5 43 24-71 4-46 (159)
54 1na3_A Designed protein CTPR2; 23.1 1.5E+02 0.0051 20.6 5.2 30 32-61 9-38 (91)
55 4gco_A Protein STI-1; structur 22.9 1.2E+02 0.0043 23.8 5.2 31 31-61 12-42 (126)
56 2fbn_A 70 kDa peptidylprolyl i 22.6 1.4E+02 0.0048 24.8 5.8 30 32-61 88-117 (198)
57 3qy2_A Cyclin-dependent kinase 22.0 72 0.0025 27.1 3.5 48 366-416 33-90 (117)
58 2fbn_A 70 kDa peptidylprolyl i 20.8 1.6E+02 0.0054 24.5 5.7 47 23-73 29-75 (198)
59 1qb3_A Cyclin-dependent kinase 20.7 39 0.0013 29.8 1.7 49 366-417 33-91 (150)
60 2oo2_A Hypothetical protein AF 20.5 1.4E+02 0.0049 23.9 4.9 31 25-55 28-58 (86)
61 1elr_A TPR2A-domain of HOP; HO 20.3 1.9E+02 0.0065 21.1 5.6 30 32-61 79-108 (131)
62 1na3_A Designed protein CTPR2; 20.3 1.6E+02 0.0054 20.4 4.9 28 34-61 45-72 (91)
No 1
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=99.95 E-value=7.5e-28 Score=215.48 Aligned_cols=110 Identities=24% Similarity=0.400 Sum_probs=98.9
Q ss_pred hhhhhHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHHHH
Q 014747 5 SEGINIAASAQRLDVDNRIALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLK 84 (419)
Q Consensus 5 ~~~~eL~~~A~~~e~n~~iplr~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~l~ 84 (419)
....+|+++|.+++||++|||++|||+|++|+++|.+|+++||+++|||+|+||++||+++||+||||+.....++..++
T Consensus 13 ~~i~~L~~~A~~~~v~~~i~l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l 92 (146)
T 2xze_A 13 DRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTV 92 (146)
T ss_dssp HHHHHHHHHHTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHH
T ss_pred cCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999986655566666
Q ss_pred HHHHHH-HHHHHhhcHHHHHHHHHHHHhhhh
Q 014747 85 KKLLNA-LSELEELQPAVQQKINELNRKKTN 114 (419)
Q Consensus 85 k~l~~v-l~~lE~LK~~I~~~Y~e~~~~~~~ 114 (419)
++++.+ +++||.||+.|+++|+++++.+..
T Consensus 93 ~~l~~~~~~~lE~LK~~L~~rY~~e~~~~~~ 123 (146)
T 2xze_A 93 KKLKEIAFPKAEELKAELLKRYTKEYTEYNE 123 (146)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776 999999999999999976664433
No 2
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=99.90 E-value=7.9e-24 Score=188.95 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=90.6
Q ss_pred hhHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHH-HHHH
Q 014747 8 INIAASAQRLDVDNRIALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLY-LKKK 86 (419)
Q Consensus 8 ~eL~~~A~~~e~n~~iplr~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~-l~k~ 86 (419)
.+|.+.+ ..+|.+||+++|||+|++|+++|.+|+++||+|+|||+||||++|| ++||+||||+......+.. .+++
T Consensus 20 e~L~k~~--~~~d~~ipl~~y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~-~kIpkHpdyk~~~~~~k~~l~k~~ 96 (144)
T 2a9u_A 20 KDLNKKT--EVKPEKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVY-NLIKKRPDFKQQQDYFHSILGPGN 96 (144)
T ss_dssp HHHHGGG--CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTTSHHHHHTHHHHHHHHCHHH
T ss_pred HHHHHhc--ccccccCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHhcCcchhhhhHHHHHHHHHhH
Confidence 3555544 7788899999999999999999999999999999999999999999 7999999999766544555 3678
Q ss_pred HHHHHHHHHhhcHHHHHHHHH-HHHhhhh
Q 014747 87 LLNALSELEELQPAVQQKINE-LNRKKTN 114 (419)
Q Consensus 87 l~~vl~~lE~LK~~I~~~Y~e-~~~~~~~ 114 (419)
++.||+++|.||+.|+++|++ +++.+.+
T Consensus 97 ~~~vl~~lE~LK~~L~~rYe~~e~~~~l~ 125 (144)
T 2a9u_A 97 IKKAVEEAERLSESLKLRYEEAEVRKKLE 125 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 7775544
No 3
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.4e-22 Score=193.11 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=76.1
Q ss_pred CeEeeeCHHHHHHHHHHHhhhcccccchhhhhcccccC---CeeEEEEEeeccCCCCCCCccccChHHHHHHhhcCCcee
Q 014747 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKN---RKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFP 408 (419)
Q Consensus 332 l~~v~~p~~l~~~fl~~a~~Nt~~~~etCgil~g~l~~---~~~~it~liiP~q~~t~d~C~~~~ee~~f~~~~~~~l~~ 408 (419)
.++++||.+|+.+|+.+|..|| +|||||||++.. +++.|+|+|||+|.||+|+|++.||+++|+|||.+||.+
T Consensus 37 ~~t~vlPknLlkkFi~IAD~~T----q~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~l~dLe~ 112 (254)
T 2og4_A 37 QNVYVLPKNLLKKFIEISDVKI----QVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLEL 112 (254)
T ss_dssp SCEEEEEHHHHHHHHHTSCSSS----CCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTTCTTCEE
T ss_pred CcEEEcCHHHHHHHHHHhhccc----eEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchhhcCCEe
Confidence 6889999999999999999999 699999999964 589999999999999999999999999999999999999
Q ss_pred eeeeee
Q 014747 409 LGWIHV 414 (419)
Q Consensus 409 lgwiHT 414 (419)
||||||
T Consensus 113 LGWIHT 118 (254)
T 2og4_A 113 LGWIHT 118 (254)
T ss_dssp EEEEEE
T ss_pred cceEee
Confidence 999999
No 4
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.81 E-value=6.7e-21 Score=179.75 Aligned_cols=83 Identities=42% Similarity=0.790 Sum_probs=82.0
Q ss_pred CeEeeeCHHHHHHHHHHHhhhcccccchhhhhcccccCCeeEEEEEeeccCCCCCCCccccChHHHHHHhhcCCceeeee
Q 014747 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGW 411 (419)
Q Consensus 332 l~~v~~p~~l~~~fl~~a~~Nt~~~~etCgil~g~l~~~~~~it~liiP~q~~t~d~C~~~~ee~~f~~~~~~~l~~lgw 411 (419)
++.|+||.+|+.+||.+|..||.+++|+||+|+|+...+.+.|+++++|.|.+|+++|++.+++++|+|++.+||..|||
T Consensus 41 lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~~~l~~vGW 120 (211)
T 3rzv_A 41 LRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGW 120 (211)
T ss_dssp BCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhhCCCEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee
Q 014747 412 IHV 414 (419)
Q Consensus 412 iHT 414 (419)
|||
T Consensus 121 yHS 123 (211)
T 3rzv_A 121 IHT 123 (211)
T ss_dssp EEE
T ss_pred EeC
Confidence 999
No 5
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.77 E-value=4.6e-20 Score=178.93 Aligned_cols=77 Identities=17% Similarity=0.371 Sum_probs=73.6
Q ss_pred CeEeeeCHHHHHHHHHHHhhhcccccchhhhhcccccC---CeeEEEEEeeccCCCCCCCccccChHHHHHHhhcCCcee
Q 014747 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKN---RKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFP 408 (419)
Q Consensus 332 l~~v~~p~~l~~~fl~~a~~Nt~~~~etCgil~g~l~~---~~~~it~liiP~q~~t~d~C~~~~ee~~f~~~~~~~l~~ 408 (419)
.+.++||.+|+.+|+.||..|| +|||||||++.. +++.|+|+|||+|.||+|+|++.||+..++|+ +||.+
T Consensus 38 ~~t~vlPknllkkFi~IADlrT----q~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l--~dLe~ 111 (273)
T 2p8r_A 38 GYTYILPKNILKKFITISDLRT----QIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL--RDFEP 111 (273)
T ss_dssp SCEEEEEHHHHHHHHHTSCSSS----CCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT--TTSEE
T ss_pred ccEEEecHHHHHHHHHHhhccc----eEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh--ccccc
Confidence 5789999999999999999999 799999999963 58999999999999999999999999999998 99999
Q ss_pred eeeeee
Q 014747 409 LGWIHV 414 (419)
Q Consensus 409 lgwiHT 414 (419)
||||||
T Consensus 112 LGWIHT 117 (273)
T 2p8r_A 112 LGWMHT 117 (273)
T ss_dssp EEEEEE
T ss_pred cceEee
Confidence 999999
No 6
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.69 E-value=9.6e-18 Score=154.29 Aligned_cols=83 Identities=43% Similarity=0.795 Sum_probs=81.6
Q ss_pred CeEeeeCHHHHHHHHHHHhhhcccccchhhhhcccccCCeeEEEEEeeccCCCCCCCccccChHHHHHHhhcCCceeeee
Q 014747 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGW 411 (419)
Q Consensus 332 l~~v~~p~~l~~~fl~~a~~Nt~~~~etCgil~g~l~~~~~~it~liiP~q~~t~d~C~~~~ee~~f~~~~~~~l~~lgw 411 (419)
++.|+||.+++.+|+.+|..||.+++|+||+|+|+...+.+.|++++++.|.+++++|++.+++++|++++++||.+|||
T Consensus 8 ~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~~~~~l~~vGw 87 (178)
T 2znr_A 8 LRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGW 87 (178)
T ss_dssp CCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHHHHHHHHhCCCEEEEE
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee
Q 014747 412 IHV 414 (419)
Q Consensus 412 iHT 414 (419)
|||
T Consensus 88 yHS 90 (178)
T 2znr_A 88 IHT 90 (178)
T ss_dssp EEE
T ss_pred EeC
Confidence 999
No 7
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=99.61 E-value=7.9e-17 Score=166.49 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=69.1
Q ss_pred CeEeeeCHHHHHHHHHHHhhhcccccchhhhhccccc---CCeeEEEEEeeccCCCCCCCcccc--ChHHHHHHhhcCCc
Q 014747 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK---NRKFYITALIIPKQESTSDSCQAT--NEEEIFEVQDKRSL 406 (419)
Q Consensus 332 l~~v~~p~~l~~~fl~~a~~Nt~~~~etCgil~g~l~---~~~~~it~liiP~q~~t~d~C~~~--~ee~~f~~~~~~~l 406 (419)
-+.++||.+|+.+|+.+|..|| ++||+|||+.. .|++.|+|++||+|.||+|+|++. .++++ ||..+||
T Consensus 348 ~~tyVlPkNLLkKFI~IADlrT----QicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp~lp~he~--~~~l~dL 421 (565)
T 3sbg_A 348 QNVYVLPKNLLKKFIEISDVKI----QVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGD--LPDTEGL 421 (565)
T ss_dssp SCEEEEEHHHHHHHHHHSCSSS----CCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEECCCCCCTT--STTCTTC
T ss_pred CcEEEccHHHHHHHHHHhhccc----eeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECCCCCcccc--ccccccC
Confidence 3679999999999999999999 79999999998 378999999999999999999998 45544 4447999
Q ss_pred eeeeeeee
Q 014747 407 FPLGWIHV 414 (419)
Q Consensus 407 ~~lgwiHT 414 (419)
.+||||||
T Consensus 422 e~LGWIHT 429 (565)
T 3sbg_A 422 ELLGWIHT 429 (565)
T ss_dssp EEEEEEEE
T ss_pred Eecceeee
Confidence 99999999
No 8
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.60 E-value=6.5e-08 Score=85.35 Aligned_cols=77 Identities=16% Similarity=0.307 Sum_probs=63.3
Q ss_pred eeeCHHHHHHHHHHHhhhcccccchhhhhcccccCCeeEEEEEeec-cCCCCCCCccccChHHHHHHh---hcCCceeee
Q 014747 335 LHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIP-KQESTSDSCQATNEEEIFEVQ---DKRSLFPLG 410 (419)
Q Consensus 335 v~~p~~l~~~fl~~a~~Nt~~~~etCgil~g~l~~~~~~it~liiP-~q~~t~d~C~~~~ee~~f~~~---~~~~l~~lg 410 (419)
|.||.+++.+++..|..+ ...|+||+|+|+...+.+.|+.++.. ....+++ ....+.++++..+ +++|+-.+|
T Consensus 2 l~i~~~~l~~i~~ha~~~--~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~-~f~~dp~~~~~~~~~~~~~g~~ivG 78 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQA--LPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPE-HFSMDPREQLTAVKDMRKNGWVMLG 78 (146)
T ss_dssp EEEEHHHHHHHHHHHHHH--TTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSS-SCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEECHHHHHHHHHHHHhc--CCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCc-eEEECHHHHHHHHHHHHHCCCEEEE
Confidence 679999999999999986 47899999999999888999987654 3445555 4567777887776 678999999
Q ss_pred eeee
Q 014747 411 WIHV 414 (419)
Q Consensus 411 wiHT 414 (419)
|+||
T Consensus 79 ~~HS 82 (146)
T 2kks_A 79 NFHS 82 (146)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9999
No 9
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.46 E-value=1.7e-07 Score=83.28 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=63.0
Q ss_pred eeeCHHHHHHHHHHHhhhcccccchhhhhccccc-CCeeEEEEEeeccCC---CCCCCccccChHHHHHHhh---cCCce
Q 014747 335 LHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK-NRKFYITALIIPKQE---STSDSCQATNEEEIFEVQD---KRSLF 407 (419)
Q Consensus 335 v~~p~~l~~~fl~~a~~Nt~~~~etCgil~g~l~-~~~~~it~liiP~q~---~t~d~C~~~~ee~~f~~~~---~~~l~ 407 (419)
|.|+.+++.+++..|.. ....|+||+|+|+.. .+.+.|+.+ +|-+. +++.+|...+.++++..++ +.++.
T Consensus 1 l~i~~~~l~~i~~ha~~--~~p~E~cGlL~G~~~~~~~~~v~~~-~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~g~~ 77 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGAD--AYPEEGCGFLLGTVTDDGDNRVAAL-HRATNRRSEQRTRRYELTADDYRAADAAAQEQGLD 77 (153)
T ss_dssp CBCCHHHHHHHHHHHHH--HTTSCCCEEEEEEECTTSCEEEEEE-EESSCCCCCCCSCCSSCCCCSHHHHHHHHHHHTCE
T ss_pred CEeCHHHHHHHHHHHHh--cCCcceEEEEEEeeccCCCeEEEEE-EECCCCCCCCCCcEEEECHHHHHHHHHHHHHCCCe
Confidence 46899999999999997 456899999999998 788999874 56554 4666777777777777764 57999
Q ss_pred eeeeeee
Q 014747 408 PLGWIHV 414 (419)
Q Consensus 408 ~lgwiHT 414 (419)
.+||+||
T Consensus 78 ivG~yHS 84 (153)
T 2kcq_A 78 VVGVYHS 84 (153)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 9999998
No 10
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=97.50 E-value=9.2e-05 Score=63.32 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=45.6
Q ss_pred eeeCHHHHHHHHHHHhhhcccccchhhhhcccccCCeeEEEEEe-eccCCCCCCCccccChHHHHH-HhhcCCceeeeee
Q 014747 335 LHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALI-IPKQESTSDSCQATNEEEIFE-VQDKRSLFPLGWI 412 (419)
Q Consensus 335 v~~p~~l~~~fl~~a~~Nt~~~~etCgil~g~l~~~~~~it~li-iP~q~~t~d~C~~~~ee~~f~-~~~~~~l~~lgwi 412 (419)
|.|+.++.++++..|.. .-..|.||+|+|+.. .|++++ +| ..+++ ....|. ..+.+++-.+||.
T Consensus 4 v~i~~~~l~~i~~ha~~--~~P~E~cGlL~g~~~----~v~~~~~~p-~~~~~-------~~~~f~~~~~~~~~~ivG~~ 69 (124)
T 1oi0_A 4 MKISRGLLKTILEAAKS--AHPDEFIALLSGSKD----VMDELIFLP-FVSGS-------VSAVIHLDMLPIGMKVFGTV 69 (124)
T ss_dssp CEECHHHHHHHHHHHHH--HTTSCCEEEEEESTT----EECEEEECC-CCC--------------------CCCEEEEEE
T ss_pred EEEcHHHHHHHHHHHHh--cCCCeeEEEEecccC----EEEEEEECC-CCCCC-------cCceeeeeeccCCCEEEEEE
Confidence 78999999999999997 455699999999974 677766 67 44432 112231 3566899999999
Q ss_pred ee
Q 014747 413 HV 414 (419)
Q Consensus 413 HT 414 (419)
|+
T Consensus 70 HS 71 (124)
T 1oi0_A 70 HS 71 (124)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 11
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00019 Score=70.82 Aligned_cols=82 Identities=18% Similarity=0.311 Sum_probs=65.8
Q ss_pred CeEeeeCHHHHHHHHHHHhhhcccccchhhhhcccccCC-eeEEEEEeeccCCCCCCCccccChHHHHHHhh-----cCC
Q 014747 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNR-KFYITALIIPKQESTSDSCQATNEEEIFEVQD-----KRS 405 (419)
Q Consensus 332 l~~v~~p~~l~~~fl~~a~~Nt~~~~etCgil~g~l~~~-~~~it~liiP~q~~t~d~C~~~~ee~~f~~~~-----~~~ 405 (419)
...|.|..--.=+.+..|..+ ...|.||+|.|+..++ .+.||+.+-..++++.+.|+..+++-..++.+ ..+
T Consensus 24 ~~~V~is~lallkm~~Ha~~~--~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v~~~ 101 (306)
T 4b4t_V 24 KETVYISSIALLKMLKHGRAG--VPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRD 101 (306)
T ss_dssp CCEEEECHHHHHHHHHHTCSC--SSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeHHHHHHHHHHhcCC--CCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHhCCC
Confidence 467999988888888888754 4579999999997755 79999998878999999999988763333332 377
Q ss_pred ceeeeeeeec
Q 014747 406 LFPLGWIHVS 415 (419)
Q Consensus 406 l~~lgwiHT~ 415 (419)
+.++||.||.
T Consensus 102 ~~vVGWYhSh 111 (306)
T 4b4t_V 102 QMVVGWYHSH 111 (306)
T ss_dssp CCCSEEEEEC
T ss_pred cceeeEEecC
Confidence 8999999993
No 12
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=97.08 E-value=0.0026 Score=54.53 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=63.1
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHHHHHHHHHHHHHHHhhcHHH
Q 014747 23 IALR-YYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAV 101 (419)
Q Consensus 23 iplr-~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~l~k~l~~vl~~lE~LK~~I 101 (419)
++-. .++.-|..++++|--+-..|+++.||.+|...+++|+..|..-+ .....+..++.++..-+.++|.||..|
T Consensus 8 m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~----~~~~~k~~lr~K~~eYl~RAE~LK~~l 83 (117)
T 2cpt_A 8 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEA----QGDKAKQSIRAKCTEYLDRAEKLKEYL 83 (117)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334 58889999999999999999999999999999999987765321 133557788999999999999999977
Q ss_pred H
Q 014747 102 Q 102 (419)
Q Consensus 102 ~ 102 (419)
.
T Consensus 84 ~ 84 (117)
T 2cpt_A 84 K 84 (117)
T ss_dssp H
T ss_pred h
Confidence 5
No 13
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=97.00 E-value=0.0036 Score=50.81 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 014747 30 RIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQ 103 (419)
Q Consensus 30 Rsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~l~k~l~~vl~~lE~LK~~I~~ 103 (419)
-.|..++++|--+...|+++.|+.+|..-+++++..+..-+ .+..|..++.++..-+.++|.||..|++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~-----d~~~k~~lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTK-----DNTKRCNLREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999988875533 2345778889999999999999998864
No 14
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=96.98 E-value=0.0048 Score=50.63 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 014747 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQK 104 (419)
Q Consensus 28 YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~l~k~l~~vl~~lE~LK~~I~~~ 104 (419)
++..|..++++|--+...||++.||.+|..-+++++..|..-+ ....+..++.++..-+.++|.||..|...
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~-----~~~~k~~l~~K~~eYl~RAE~LK~~l~~~ 82 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTK-----ESSKRCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567889999999999999999999999999999988775433 33567788899999999999999998754
No 15
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0061 Score=48.87 Aligned_cols=76 Identities=9% Similarity=0.114 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 014747 24 ALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQ 103 (419)
Q Consensus 24 plr~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~l~k~l~~vl~~lE~LK~~I~~ 103 (419)
|-..++..|..++++|--.-..||++.|+.+|..-+++++..+..=+ .+..+..++.++..-+.++|.||..|++
T Consensus 5 ~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~-----~~~~k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 5 STGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEK-----NPKSKDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33447889999999999999999999999999999999987763222 3456778999999999999999998864
Q ss_pred H
Q 014747 104 K 104 (419)
Q Consensus 104 ~ 104 (419)
.
T Consensus 80 ~ 80 (85)
T 2v6x_A 80 E 80 (85)
T ss_dssp H
T ss_pred c
Confidence 3
No 16
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=96.62 E-value=0.0039 Score=50.30 Aligned_cols=72 Identities=14% Similarity=0.041 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHHHHHHHHHHHHHHHhhcHH
Q 014747 24 ALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPA 100 (419)
Q Consensus 24 plr~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~l~k~l~~vl~~lE~LK~~ 100 (419)
|-..++..|..++++|-.+-+.|+++.||.+|..-+++++..|..=||- ..+..++.++.+-+.++|.||..
T Consensus 11 ~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~-----~~k~~ir~K~~eY~~RAE~LK~~ 82 (83)
T 2w2u_A 11 AQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDG-----STAAIYEQMINEYKRRIEVLKEL 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTS-----STHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556999999999999999999999999999999999998776543332 34667889999999999999964
No 17
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=96.37 E-value=0.0056 Score=49.18 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHHHHHHHHHHHHHHHhhcHHH
Q 014747 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAV 101 (419)
Q Consensus 28 YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~l~k~l~~vl~~lE~LK~~I 101 (419)
++..|..++++|--+-+.||++.||.+|..-+++++..|..-||- ..+..++.++..-+.++|.||..|
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~-----~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPES-----VARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTC-----TTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788999999999999999999999999999999998776433332 346678899999999999999866
No 18
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=95.24 E-value=0.0032 Score=60.89 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 014747 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQKI 105 (419)
Q Consensus 28 YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~l~k~l~~vl~~lE~LK~~I~~~Y 105 (419)
++.+|.+++++|--+.+.|+++.||.+|..-+++++..+..-+ .+..|..++.++..-+.++|+||..|+++-
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~-----d~~~k~~lr~Ki~eYl~RAE~LK~~L~k~k 91 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTK-----DNTKRCNLREKISKYMDRAENIKKYLDQEK 91 (257)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7889999999999999999999999999999999988876433 234577888999999999999999998754
No 19
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=92.08 E-value=0.29 Score=44.08 Aligned_cols=83 Identities=8% Similarity=0.162 Sum_probs=54.0
Q ss_pred CeEeeeCHHHHHHHHHHHhhhcc--cccchhhhhcccccCCeeEEEEEeeccCCCCCCCc--cccChHHH---HHHhh--
Q 014747 332 PLQLHISTTMMDNFMKLAKSNTD--KNLETCGILAGSLKNRKFYITALIIPKQESTSDSC--QATNEEEI---FEVQD-- 402 (419)
Q Consensus 332 l~~v~~p~~l~~~fl~~a~~Nt~--~~~etCgil~g~l~~~~~~it~liiP~q~~t~d~C--~~~~ee~~---f~~~~-- 402 (419)
...|.|.+-..-+-+..|..... ...|-||+|.|+..++.+.|++.+-=...++.+.+ ...+.+-+ ++...
T Consensus 7 ~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~v 86 (187)
T 2o95_A 7 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKV 86 (187)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHHTT
T ss_pred CCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHHHh
Confidence 45688888877777777655432 46799999999999999999886543333333322 12332311 21111
Q ss_pred cCCceeeeeeee
Q 014747 403 KRSLFPLGWIHV 414 (419)
Q Consensus 403 ~~~l~~lgwiHT 414 (419)
..++..+||-||
T Consensus 87 ~~~~~iVGWY~s 98 (187)
T 2o95_A 87 NARERIVGWYHT 98 (187)
T ss_dssp SSSCEEEEEEEC
T ss_pred CCCCCEEEEEcC
Confidence 358999999998
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.92 E-value=0.099 Score=53.26 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 014747 26 RYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQK 104 (419)
Q Consensus 26 r~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~l~k~l~~vl~~lE~LK~~I~~~ 104 (419)
..|+..|.+++++|--+-+.||++.||.+|...+.+++..|.. .......+..++.++..-+.++|.||..|+++
T Consensus 5 ~~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~----e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~ 79 (444)
T 2zan_A 5 NTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKY----EAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKK 79 (444)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh----hccChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3478899999999999999999999999999999999877632 11122335678888999999999999998654
No 21
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=68.62 E-value=9.4 Score=33.05 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=46.5
Q ss_pred eEeeeCHHHHHHHHHHHhh---hcccccchhhhhcccccCCeeEEEEEeeccCCCCCCCccccChH---HHHHHhh--cC
Q 014747 333 LQLHISTTMMDNFMKLAKS---NTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEE---EIFEVQD--KR 404 (419)
Q Consensus 333 ~~v~~p~~l~~~fl~~a~~---Nt~~~~etCgil~g~l~~~~~~it~liiP~q~~t~d~C~~~~ee---~~f~~~~--~~ 404 (419)
..|.|.+-..=+-+..+.. ++....+-.|+|-|+..++.+.||+-+==..+++.+.. ..+.+ ++++... ..
T Consensus 6 ~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~-~~d~~y~~~m~~~~k~v~~ 84 (141)
T 4e0q_A 6 VTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDET-VINKDYYNKKEQQYKQVFS 84 (141)
T ss_dssp EEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEE-EECHHHHHHHHHHHHHHST
T ss_pred EEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCce-eecHHHHHHHHHHHHHhCC
Confidence 4455555444444444422 12235789999999999999999886543334443322 22221 2222222 26
Q ss_pred Cceeeeeeeec
Q 014747 405 SLFPLGWIHVS 415 (419)
Q Consensus 405 ~l~~lgwiHT~ 415 (419)
++..+||-||.
T Consensus 85 ~e~iVGWY~s~ 95 (141)
T 4e0q_A 85 DLDFIGWYTTG 95 (141)
T ss_dssp TCEEEEEEEEE
T ss_pred CccEEEEEeCC
Confidence 88999999994
No 22
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=60.80 E-value=31 Score=27.21 Aligned_cols=63 Identities=8% Similarity=-0.061 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHHHHHHHHHHHHHHHhhcH
Q 014747 32 ADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQP 99 (419)
Q Consensus 32 a~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~l~k~l~~vl~~lE~LK~ 99 (419)
-.+-++.|+-|.-.||++.|-++|--....+-..|..-. ++..|...+.-.+++-++.|.+|.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~-----d~~~r~kW~~~~~ei~~E~~~Vk~ 74 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVK-----DTHLRQKWQQVWQEINVEAKQVKD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS-----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHhHHHHHHHHHHHHHHHHH
Confidence 356688999999999999999999988877755544432 345666666656666677777664
No 23
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.42 E-value=14 Score=36.39 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=38.6
Q ss_pred chhhhhcccccCCeeEEEEEe-eccCCCCCCCcccc-Ch---HHHHHHhh--cCCceeeeeeeec
Q 014747 358 ETCGILAGSLKNRKFYITALI-IPKQESTSDSCQAT-NE---EEIFEVQD--KRSLFPLGWIHVS 415 (419)
Q Consensus 358 etCgil~g~l~~~~~~it~li-iP~q~~t~d~C~~~-~e---e~~f~~~~--~~~l~~lgwiHT~ 415 (419)
.-.|.|.|...++.+.||+-+ +|..+...+..... +. +.+++..- ..++..+||-||.
T Consensus 32 rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~~~e~iVGWY~tg 96 (338)
T 4b4t_U 32 RCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSG 96 (338)
T ss_dssp CCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHCCSCEEEEEEECC
T ss_pred eEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcCccCCEEEEEecC
Confidence 467999999999999999875 67655544443321 22 23333322 3788899999993
No 24
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=45.97 E-value=42 Score=33.66 Aligned_cols=43 Identities=9% Similarity=-0.096 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcc-CCCcCcc
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSLVTETI-PCHRDYL 73 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~LvvekL-pkHPdyk 73 (419)
+|..+.+.|.+|...|+++.|--+|-|...+....+ +.||...
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 678888999999999999999999999999997776 5698765
No 25
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=44.89 E-value=42 Score=27.41 Aligned_cols=37 Identities=8% Similarity=0.010 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 25 LRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 25 lr~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
.+.|++.|..-++.|+..++.|.++.|-....-.+.+
T Consensus 4 ~~~wl~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek 40 (122)
T 1wol_A 4 VEDWIKQAERDLEEARYAKSGGYYELACFLSQQCAEK 40 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4679999999999999999999999888777433333
No 26
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=42.44 E-value=45 Score=27.26 Aligned_cols=38 Identities=11% Similarity=-0.080 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 014747 25 LRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLV 62 (419)
Q Consensus 25 lr~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~Lv 62 (419)
.+.|++.|..-++.|+..++.|+++.|-....-.+...
T Consensus 4 ~~~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek~ 41 (127)
T 1ufb_A 4 ARDWLEQARHNLRHAQGSLGLGDYAWACFAAQQAAEAA 41 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 46799999999999999999999998877665555544
No 27
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=41.63 E-value=71 Score=32.70 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcc-CCCcCcc
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSLVTETI-PCHRDYL 73 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~LvvekL-pkHPdyk 73 (419)
+|..+.+.|.+|..-|+++.|=-+|-|...+....+ +.||+..
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 435 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK 435 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 678888999999999999999999999999997776 5698775
No 28
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=38.73 E-value=54 Score=25.76 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 25 LRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 25 lr~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
.....+.+..++..|.+|...|+++.|.-+|.+.+.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 42 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL 42 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3556788999999999999999999999999887765
No 29
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=37.04 E-value=77 Score=25.68 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHH
Q 014747 25 LRYYYRIADNILKQADIFREEKNIIDL 51 (419)
Q Consensus 25 lr~YlRsa~~llreA~iy~~egn~e~A 51 (419)
...|++.|..-++.|+..+++|++..|
T Consensus 5 ~~~~l~~A~~~L~~A~~~~~~g~y~~a 31 (126)
T 2hsb_A 5 LELRIRKAEKLVQDAKKEFEMGLYERC 31 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467999999999999999999999977
No 30
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=32.69 E-value=1e+02 Score=27.57 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcC
Q 014747 33 DNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRD 71 (419)
Q Consensus 33 ~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPd 71 (419)
..++--|+.++.+|++-+|--.|-+.+.+. ..|++++-
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~-k~l~k~~s 101 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQK-KALSKTSK 101 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HCC-----
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHH-HHHhcCCC
Confidence 566777999999999999999999999888 78888874
No 31
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=31.36 E-value=55 Score=26.48 Aligned_cols=36 Identities=3% Similarity=-0.002 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 014747 29 YRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTE 64 (419)
Q Consensus 29 lRsa~~llreA~iy~~egn~e~AYily~Ry~~Lvve 64 (419)
+..+..+...|..|++.|+++.|--.|.+.+.++-.
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~ 43 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDT 43 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999988643
No 32
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=31.31 E-value=78 Score=23.35 Aligned_cols=31 Identities=10% Similarity=-0.122 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
.+..++..|.+|...|+++.|.-+|.+.+.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 33 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL 33 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4677888899999999999999998887765
No 33
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=30.88 E-value=77 Score=24.19 Aligned_cols=31 Identities=3% Similarity=-0.062 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
.+..+...|..|++.|+++.|--.|-+.+.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 33 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 33 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5678889999999999999999998887665
No 34
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.71 E-value=2.4e+02 Score=23.75 Aligned_cols=44 Identities=11% Similarity=-0.080 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccC
Q 014747 24 ALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIP 67 (419)
Q Consensus 24 plr~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLp 67 (419)
-+|.+++.|=..|..|-.+-+.|+.+.|--+|.+=+.-+..-|.
T Consensus 14 ~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~ 57 (116)
T 2dl1_A 14 IIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGIS 57 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcc
Confidence 37899999999999999999999999999999887776655443
No 35
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=30.61 E-value=1.5e+02 Score=23.72 Aligned_cols=29 Identities=3% Similarity=-0.170 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 33 DNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 33 ~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
.-++..|.+|.+.|+++.|.-.|-+.+.+
T Consensus 46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 46 IYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44566788888899999998888877665
No 36
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=29.37 E-value=2.2e+02 Score=23.99 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccc--cHHH----HH-----HHHHHHHHHHHHHHh
Q 014747 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLAS--FKSQ----KL-----YLKKKLLNALSELEE 96 (419)
Q Consensus 28 YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~--~~~~----k~-----~l~k~l~~vl~~lE~ 96 (419)
.|.-|..-++.|..+.++||++.+-..+.|..+++.+ |...=|+... -+.. +. .+...+++-.+.+++
T Consensus 32 Lydgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~-L~~sLd~e~GgeiA~nL~~LY~y~~~~L~~An~~~d~~~l~e 110 (131)
T 3iqc_A 32 LYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTE-LLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHHTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHhcCCccccHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHH
Confidence 7788999999999999999999999999999999854 5555555421 1111 22 223444444677777
Q ss_pred hcHHHHHHHHHHHHhh
Q 014747 97 LQPAVQQKINELNRKK 112 (419)
Q Consensus 97 LK~~I~~~Y~e~~~~~ 112 (419)
+...|..=.+.|.+..
T Consensus 111 v~~ll~~lr~aW~~i~ 126 (131)
T 3iqc_A 111 VLNVARGLLEAWREIH 126 (131)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777887643
No 37
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=29.32 E-value=1e+02 Score=23.66 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCc
Q 014747 36 LKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDY 72 (419)
Q Consensus 36 lreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdy 72 (419)
..-|..|.+-|+++.|.-+|.+...+ -|.|+..
T Consensus 50 ~~L~~~~~~~g~~~~A~~~~~~al~l----~P~~~~~ 82 (104)
T 2v5f_A 50 DYLSYAVYQQGDLDKALLLTKKLLEL----DPEHQRA 82 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHH
Confidence 35678889999999999988886554 4555433
No 38
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=29.16 E-value=87 Score=22.59 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
.+..++..|..|...|+++.|.-.|-+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 33 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL 33 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4567888999999999999999988887664
No 39
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=28.16 E-value=81 Score=22.97 Aligned_cols=31 Identities=3% Similarity=-0.104 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
.+..++..|.+|+..|+++.|--.|-+.+.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 33 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA 33 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4567788999999999999999999887765
No 40
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=27.43 E-value=98 Score=30.91 Aligned_cols=43 Identities=9% Similarity=-0.165 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccC-CCcCcc
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIP-CHRDYL 73 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLp-kHPdyk 73 (419)
++..+-.-|.+|...|+++.|--+|.|-+.++...++ .||+.-
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 5666667799999999999999999999999977774 488764
No 41
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=27.42 E-value=1.7e+02 Score=23.62 Aligned_cols=34 Identities=3% Similarity=-0.242 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCc
Q 014747 35 ILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDY 72 (419)
Q Consensus 35 llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdy 72 (419)
.+..|.+|.+.|+++.|--.|-+.+.+ -|.+++.
T Consensus 58 ~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~~ 91 (148)
T 2vgx_A 58 FLGLGACRQAMGQYDLAIHSYSYGAVM----DIXEPRF 91 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCTHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc----CCCCchH
Confidence 345678888888888888888876655 3555554
No 42
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=27.28 E-value=1.6e+02 Score=23.12 Aligned_cols=34 Identities=3% Similarity=-0.240 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCc
Q 014747 35 ILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDY 72 (419)
Q Consensus 35 llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdy 72 (419)
++..|.+|.+.|+++.|--.|-+.+.+ -|.++++
T Consensus 55 ~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~ 88 (142)
T 2xcb_A 55 FLGLGACRQSLGLYEQALQSYSYGALM----DINEPRF 88 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc----CCCCcHH
Confidence 445677888888888888888776655 2555554
No 43
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=27.16 E-value=1.7e+02 Score=21.81 Aligned_cols=55 Identities=15% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcccccHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQK 104 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk~~~~~~k~~l~k~l~~vl~~lE~LK~~I~~~ 104 (419)
....++..|.+|.+.|+++.|--.|-+.+.+. |+.. ....+...+..++..+..+
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------p~~~------------~~~~a~~~l~~l~~~~~~r 129 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-------PGSD------------AARVAQERLQSIRLGQQLR 129 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTSH------------HHHHHHHHHHHHC------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCh------------HHHHHHHHHHHHHhhhhcC
No 44
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=27.09 E-value=52 Score=28.13 Aligned_cols=40 Identities=13% Similarity=-0.091 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 014747 25 LRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTE 64 (419)
Q Consensus 25 lr~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~Lvve 64 (419)
.+.|++.|..-++.|+..++.|+++.|-.+..-.+.+.+.
T Consensus 9 ~~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~Ek~lK 48 (141)
T 3o10_A 9 ARRWLRQARANFSAARNDLHKNANEWVCFKCYLSTKLALI 48 (141)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHhhHHhhCccceEeeehhHHHHHHHH
Confidence 4679999999999999999999998876665555544443
No 45
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=27.02 E-value=1e+02 Score=31.04 Aligned_cols=43 Identities=2% Similarity=-0.046 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCC-CcCcc
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPC-HRDYL 73 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpk-HPdyk 73 (419)
++..+-.-|.+|..-|+++.|--+|-|-+.+....+.. ||+--
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 55666778999999999999999999999999777754 98764
No 46
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=26.66 E-value=46 Score=28.64 Aligned_cols=40 Identities=8% Similarity=0.093 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCC
Q 014747 29 YRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPC 68 (419)
Q Consensus 29 lRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpk 68 (419)
+..|..++++|.-++..||.-||==-|++.+.-.++.|..
T Consensus 4 l~lAe~yL~EA~ell~kGD~vQAsEK~ykAaeeaiKALA~ 43 (129)
T 2jpu_A 4 STSAEVYYEEAEEFLSKGDLVQACEKYYKAAEEAIKLLVI 43 (129)
T ss_dssp SCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999888776644
No 47
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=26.15 E-value=1.1e+02 Score=23.98 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 28 YlRsa~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
|...|..+.+.+.+|...|+++.|--.|-+.+.+
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556777888999999999999999888886543
No 48
>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged dimer, binding protein; HET: CPS; 1.95A {Schizosaccharomyces pombe} SCOP: d.97.1.1 PDB: 1sce_A
Probab=25.71 E-value=22 Score=29.74 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=33.3
Q ss_pred cccCCeeEEEEEeeccCCC---CCC----Ccc---ccChHHHHHHhhcCCceeeeeeeecc
Q 014747 366 SLKNRKFYITALIIPKQES---TSD----SCQ---ATNEEEIFEVQDKRSLFPLGWIHVSA 416 (419)
Q Consensus 366 ~l~~~~~~it~liiP~q~~---t~d----~C~---~~~ee~~f~~~~~~~l~~lgwiHT~~ 416 (419)
+-.++.|.-.|+|+|++-. ..+ .+- -..|+|.=.+..+++ .||+|=.+
T Consensus 29 kY~Dd~yEYRHViLPke~~k~ipk~~~~~~~gt~rLLtE~EWR~LGIqqS---~GW~Hy~i 86 (105)
T 1puc_A 29 RYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQS---LGWEMYEV 86 (105)
T ss_dssp CEECSSCEECCEECCHHHHTTSCGGGBCTTTSSBCCCCHHHHHHTTCCCC---SSCCCCCC
T ss_pred cccCCCeEEEEEEcCHHHHHhCcccccccccccccccCHHHHHHhCcccC---CCcEEEee
Confidence 4567899999999998732 222 222 366888877777765 79999643
No 49
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=25.11 E-value=1.1e+02 Score=31.22 Aligned_cols=43 Identities=2% Similarity=-0.109 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCC-CcCcc
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPC-HRDYL 73 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpk-HPdyk 73 (419)
++..+-.-|.+|..-|+++.|--+|.|.+.+....+.. ||+.-
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 56667777999999999999999999999999777755 88764
No 50
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=25.01 E-value=96 Score=24.98 Aligned_cols=30 Identities=0% Similarity=-0.158 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 32 ADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 32 a~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
+.-++..|.+|++.|+++.|--.+.+.+.+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 345667789999999999998888887666
No 51
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=24.88 E-value=99 Score=23.53 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 32 ADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 32 a~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
+..++..|.+|+..|+++.|.-.|.+.+.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 38 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR 38 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 566788899999999999999998887766
No 52
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=24.78 E-value=1e+02 Score=24.78 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
.+..++..|.+|++.|+++.|.-.|.+.+.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 40 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI 40 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677889999999999999999999987766
No 53
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=24.23 E-value=1.1e+02 Score=26.72 Aligned_cols=43 Identities=12% Similarity=-0.160 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcC
Q 014747 24 ALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRD 71 (419)
Q Consensus 24 plr~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPd 71 (419)
||+. ...|..++..+..+++.|+++.|--.|-+.+.+. |.||+
T Consensus 4 ~~~~-~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~----p~~~~ 46 (159)
T 2hr2_A 4 PLKE-VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS----HTMPP 46 (159)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----TTSCT
T ss_pred cHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCCcc
Confidence 5666 6789999999999999999999999999977765 55655
No 54
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=23.10 E-value=1.5e+02 Score=20.59 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 32 ADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 32 a~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
+..++..|.+|...|+++.|--.|-+.+.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 38 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 38 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 455677899999999999999999887765
No 55
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=22.90 E-value=1.2e+02 Score=23.82 Aligned_cols=31 Identities=3% Similarity=-0.063 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 31 IADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 31 sa~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
.|......+..|++.|+++.|--.|-+.+.+
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~ 42 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR 42 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777899999999999999999887654
No 56
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=22.64 E-value=1.4e+02 Score=24.84 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 32 ADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 32 a~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
+.-++..|.+|...|+++.|.-.|.+.+.+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345567788999999999998888877665
No 57
>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase activator, ubiquitin binding, transcription, cell cycle, transferase RE; HET: FLC; 2.59A {Saccharomyces cerevisiae}
Probab=21.95 E-value=72 Score=27.08 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=32.7
Q ss_pred cccCCeeEEEEEeeccCCCCC---C----Cc---cccChHHHHHHhhcCCceeeeeeeecc
Q 014747 366 SLKNRKFYITALIIPKQESTS---D----SC---QATNEEEIFEVQDKRSLFPLGWIHVSA 416 (419)
Q Consensus 366 ~l~~~~~~it~liiP~q~~t~---d----~C---~~~~ee~~f~~~~~~~l~~lgwiHT~~ 416 (419)
+-.++.|--.|+|+|+.-..- + ++ --..|+|.=.+..+++ +||+|=.+
T Consensus 33 KY~Dd~yEYRHViLPke~~k~iPk~~~~~~~g~~rLLsE~EWR~LGIqqS---~GW~HY~i 90 (117)
T 3qy2_A 33 RYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQS---LGWEHYEC 90 (117)
T ss_dssp CEECSSEEEEEEECCGGGGGGSCGGGBCTTTSSBCCCCHHHHHHTTCCCC---SSCEEECC
T ss_pred CccCCCeEEEEEEcCHHHHHhCchhhcccccccceecCHHHHHHhccccC---CCcEEeee
Confidence 456789999999999875431 1 12 2256888766666654 79999643
No 58
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=20.81 E-value=1.6e+02 Score=24.50 Aligned_cols=47 Identities=11% Similarity=0.026 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccCCCcCcc
Q 014747 23 IALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYL 73 (419)
Q Consensus 23 iplr~YlRsa~~llreA~iy~~egn~e~AYily~Ry~~LvvekLpkHPdyk 73 (419)
.+...-...+..+...|..|+..|+++.|.-+|.+.+.+ .|.++++.
T Consensus 29 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~ 75 (198)
T 2fbn_A 29 YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF----FIHTEEWD 75 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TTTCTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----Hhcccccc
Confidence 355667778899999999999999999999998887654 46677665
No 59
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=20.69 E-value=39 Score=29.83 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=32.2
Q ss_pred cccCCeeEEEEEeeccCCC---CCC----Cc---cccChHHHHHHhhcCCceeeeeeeeccc
Q 014747 366 SLKNRKFYITALIIPKQES---TSD----SC---QATNEEEIFEVQDKRSLFPLGWIHVSAF 417 (419)
Q Consensus 366 ~l~~~~~~it~liiP~q~~---t~d----~C---~~~~ee~~f~~~~~~~l~~lgwiHT~~~ 417 (419)
+-.++.|.-.|+|+|+.-. ..+ .+ .-..|+|.-.+..+.+ .||+|=.++
T Consensus 33 KY~Dd~YEYRHViLPke~~k~iPk~y~~~~~gt~rLLtE~EWR~LGIqQS---~GW~HYmih 91 (150)
T 1qb3_A 33 RYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQS---LGWEHYECH 91 (150)
T ss_dssp CEECSSEEEEEEECCHHHHHTSCGGGBCTTTSSBCCCCHHHHHHTTCCCC---TTCEEESCC
T ss_pred ceecCceeEEEEecCHHHHhhccccccccccccccCCCHHHHHHHccccC---cCcEEeeec
Confidence 4567899999999998722 222 12 2356887766665554 799997443
No 60
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=20.52 E-value=1.4e+02 Score=23.85 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 014747 25 LRYYYRIADNILKQADIFREEKNIIDLYVML 55 (419)
Q Consensus 25 lr~YlRsa~~llreA~iy~~egn~e~AYily 55 (419)
-..++.-|...++-|..|++.||+.+|+.-+
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~i 58 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECV 58 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5678888888999999999999999998754
No 61
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=20.31 E-value=1.9e+02 Score=21.07 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 32 ADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 32 a~~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
+..++..|.+|...|+++.|.-.|.+...+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 445667788888888888888777776553
No 62
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=20.29 E-value=1.6e+02 Score=20.41 Aligned_cols=28 Identities=4% Similarity=0.019 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014747 34 NILKQADIFREEKNIIDLYVMLLRFSSL 61 (419)
Q Consensus 34 ~llreA~iy~~egn~e~AYily~Ry~~L 61 (419)
.++..|.+|.+.|+++.|--.|-+.+.+
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4567789999999999999888887765
Done!