BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014748
(419 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54729|NUB1_MOUSE NEDD8 ultimate buster 1 OS=Mus musculus GN=Nub1 PE=1 SV=2
Length = 614
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 197/422 (46%), Gaps = 52/422 (12%)
Query: 1 MMMGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYF 60
+M+ + H ++ +KR Y AL L + F C ++L+ VDN +LQ+D+VWCYF
Sbjct: 233 LMLAMGYHEKGRAFLKRKEYGIALPCLLDADRYFCECK-ELLDTVDNYAVLQLDIVWCYF 291
Query: 61 MLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYH 120
L + L +A +L A++ + +G++ R+ ++ E L LR+ LL+G+ YH
Sbjct: 292 RLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQGIQNYH 351
Query: 121 SGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180
SG ++AR L A+ F +L + + ++ +GF Q+A+ LR C +V A +
Sbjct: 352 SGNGEEAREYLNKARQLFKELYIDPSKVHNLLQLGFTAQEARLGLRACDGNVDHAATHI- 410
Query: 181 EEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVAEAL--- 237
RR+E+ + ++ K+ +E + L +G+ + +AL
Sbjct: 411 -------------SNRREELAQIRK--EEKEKRRRRLENVNTLRGMGYSTQAAKQALHQA 455
Query: 238 RRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAK--IEQLVAMGFERPRVIE 295
R N +D+ K L L+NP + ++ RQA+ ++ I QLV MGF+
Sbjct: 456 RGNLDDALKVL--LSNPH----MWWLQDADPENNSRQASPSQESINQLVYMGFDTVVAEA 509
Query: 296 ACRAGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVEGDPDSS 355
A R G ++ Q+ Q L G S+P P + E+ P +S
Sbjct: 510 ALRVFGGNV-QLAAQTLAHHGG--------------SLP----PDLQFSGEDSSPTPSTS 550
Query: 356 FEETSATEDVNGRDVEMEDELANDLTGDVF---ADY-DIEVTKEGEAISEYLSLLDSVAG 411
+++ T + D +ME E N++ D+ DY D + E I+EYLS ++S++
Sbjct: 551 PSDSAGTSSAST-DEDMETEAVNEILEDIPEHEEDYLDSTLEDEEVIIAEYLSYVESISS 609
Query: 412 IA 413
A
Sbjct: 610 AA 611
>sp|Q9Y5A7|NUB1_HUMAN NEDD8 ultimate buster 1 OS=Homo sapiens GN=NUB1 PE=1 SV=2
Length = 615
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 108/414 (26%), Positives = 186/414 (44%), Gaps = 45/414 (10%)
Query: 1 MMMGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYF 60
+M+ + H ++ +KR Y AL L ++ F C ++L+ VDN +LQ+D+VWCYF
Sbjct: 233 LMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDTVDNYAVLQLDIVWCYF 292
Query: 61 MLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYH 120
L + L +A +L A++ + +G++ R+ ++ E L LR+ LL+G+ YH
Sbjct: 293 RLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQGIRNYH 352
Query: 121 SGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180
SG +A L A+ F +L + + ++ +GF Q+A+ LR C +V A +
Sbjct: 353 SGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLGLRACDGNVDHAATHIT 412
Query: 181 EEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVAEALRRN 240
RR+E+ + ++ KK +E I+ L +G+ + L
Sbjct: 413 --------------NRREELAQIRKEEKE--KKRRRLENIRFLKGMGYSTHAAQQVLHAA 456
Query: 241 ENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAK--IEQLVAMGFERPRVIEACR 298
+ +AL L SN + +S RQ + ++ I++LV MGF+ A R
Sbjct: 457 SGNLDEALKILL---SNPQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALVAEAALR 513
Query: 299 AGGDDIHQIMLQLLGEPGSNPTAAANNNASTSISMPNNGEPSSSINNENVEGDPDSSFEE 358
++ Q+ Q L A+N S +P + E S S P ++
Sbjct: 514 VFRGNV-QLAAQTL----------AHNGGSLPPELPLSPEDSLS---------PPATSPS 553
Query: 359 TSATEDVNGRDVEMEDELANDLTGDVF---ADY-DIEVTKEGEAISEYLSLLDS 408
SA D +ME E N++ D+ DY D + E I+EYLS +++
Sbjct: 554 DSAGTSSASTDEDMETEAVNEILEDIPEHEEDYLDSTLEDEEIIIAEYLSYVEN 607
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL-----VEEKAKRVKEREDN 193
Q P+E+++++ SMGF A +ALR + ++ A+D++ EE + V E E+N
Sbjct: 727 QPPEETVAIITSMGFHRNQAIQALRATNSNLERALDWIFSHPEFEEDSDFVIEMENN 783
>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13
PE=1 SV=2
Length = 863
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL-----VEEKAKRVKEREDN 193
Q P+E ++++ SMGF+ A +ALR + ++ A+D++ EE + V E E+N
Sbjct: 727 QPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENN 783
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
PE=1 SV=2
Length = 1386
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 19/145 (13%)
Query: 155 GFKEQDAKRALRICSQDVGSAIDFLV-----EEKAKRVKERED-NEQRRKEIMEQKR--- 205
GF + + LR+C DVG++++ L+ E +R+K E N+ E MEQ++
Sbjct: 193 GFNTERCQAVLRMCDGDVGASLEHLLTQCFSETFGERMKISEAVNQISLDECMEQRQEEA 252
Query: 206 YGLTPLKKAVDIEKIKELV-SIGFEKELVAEALRRNENDSQKALDDLTNPESNS--AIQL 262
+ L + IE+I+ V +IG E E + R++ K + N + NS +
Sbjct: 253 FALKSICGEKFIERIQNRVWTIGLELEYLTSRFRKS-----KPKESTKNVQENSLEICKF 307
Query: 263 YIESRKR--KRCRQAADAKIEQLVA 285
Y++ + +CR + Q+V
Sbjct: 308 YLKGNCKFGSKCRFKHEVPPNQIVG 332
>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana
GN=DRM1 PE=4 SV=2
Length = 624
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 145 DESLSLVMSMGFKEQDAKRALRICSQDVG--SAIDFLVEEKAKRVKEREDNEQRRKEIM- 201
D L ++ MG+ +DA A+ C +D +DF+ + R + E +KE+M
Sbjct: 192 DRILQALIKMGYLREDAAIAIERCGEDASMEEVVDFICAAQMARQFDEIYAEPDKKELMN 251
Query: 202 ---EQKRYGLTPLKKAVD--IEKIKELVSIG 227
+++ Y TP K D I KE++ G
Sbjct: 252 NNKKRRTYTETPRKPNTDQLISLPKEMIGFG 282
>sp|A2AEY4|MA7D3_MOUSE MAP7 domain-containing protein 3 OS=Mus musculus GN=Map7d3 PE=2
SV=1
Length = 876
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 157 KEQDAKRALRICSQDVGSAIDF--LVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKA 214
++Q+A + ++ ++ + + + +EEK +++KE+++ +QRR+ E+KR K+A
Sbjct: 76 RQQEANKEKQLLEKEQKAKLQYEKQLEEKHRKLKEQKEKDQRRQASAEEKRKQ----KQA 131
Query: 215 VDIEKIKELVSIGFEK 230
D EK K +VS E+
Sbjct: 132 EDTEKFKAVVSRTLER 147
>sp|Q8R1K1|UBAC2_MOUSE Ubiquitin-associated domain-containing protein 2 OS=Mus musculus
GN=Ubac2 PE=2 SV=1
Length = 345
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182
L+V +E ++ +M MGF DA ALR + D+ A +FL++
Sbjct: 304 LEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 345
>sp|Q4R910|UBAC2_MACFA Ubiquitin-associated domain-containing protein 2 OS=Macaca
fascicularis GN=UBAC2 PE=2 SV=1
Length = 345
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182
L+V +E ++ +M MGF DA ALR + D+ A +FL++
Sbjct: 304 LEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 345
>sp|Q8NBM4|UBAC2_HUMAN Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens
GN=UBAC2 PE=2 SV=1
Length = 344
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182
L+V +E ++ +M MGF DA ALR + D+ A +FL++
Sbjct: 303 LEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 344
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,483,766
Number of Sequences: 539616
Number of extensions: 6242748
Number of successful extensions: 30931
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 254
Number of HSP's that attempted gapping in prelim test: 30039
Number of HSP's gapped (non-prelim): 1009
length of query: 419
length of database: 191,569,459
effective HSP length: 120
effective length of query: 299
effective length of database: 126,815,539
effective search space: 37917846161
effective search space used: 37917846161
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)