Query 014748
Match_columns 419
No_of_seqs 262 out of 640
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:07:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ae4_A Ubiquitin-associated pr 99.8 6.2E-20 2.1E-24 158.5 15.4 106 145-314 9-114 (118)
2 1oqy_A HHR23A, UV excision rep 99.8 7.1E-22 2.4E-26 200.2 2.4 164 143-317 167-366 (368)
3 2lbc_A Ubiquitin carboxyl-term 99.8 1.2E-20 4E-25 164.4 9.5 105 142-255 1-118 (126)
4 2lbc_A Ubiquitin carboxyl-term 99.8 1.3E-19 4.3E-24 157.8 7.9 102 215-316 2-118 (126)
5 3ihp_A Ubiquitin carboxyl-term 99.3 1.2E-12 4E-17 145.4 8.9 111 140-255 648-760 (854)
6 1wgn_A UBAP1, ubiquitin associ 99.3 4.7E-13 1.6E-17 101.7 3.7 42 276-317 19-60 (63)
7 1wiv_A UBP14, ubiquitin-specif 99.3 6.3E-13 2.1E-17 105.5 2.0 64 246-317 3-70 (73)
8 2crn_A Ubash3A protein; compac 99.3 1.9E-12 6.5E-17 100.2 4.1 49 141-189 6-55 (64)
9 2cpw_A CBL-interacting protein 99.3 1.8E-12 6.1E-17 100.4 3.5 48 138-186 14-62 (64)
10 1whc_A RSGI RUH-027, UBA/UBX 3 99.3 3.6E-12 1.2E-16 98.6 4.6 49 141-189 6-55 (64)
11 1wji_A Tudor domain containing 99.3 7.6E-12 2.6E-16 96.5 6.3 46 275-320 8-53 (63)
12 2dag_A Ubiquitin carboxyl-term 99.2 4.9E-12 1.7E-16 100.6 5.2 50 140-189 5-55 (74)
13 2g3q_A Protein YBL047C; endocy 99.2 5.3E-12 1.8E-16 89.9 4.6 41 143-183 3-43 (43)
14 2dak_A Ubiquitin carboxyl-term 99.2 4.2E-12 1.4E-16 97.8 3.9 48 142-189 7-54 (63)
15 2dag_A Ubiquitin carboxyl-term 99.2 1.4E-11 4.8E-16 98.0 6.7 46 274-319 7-53 (74)
16 2dai_A Ubadc1, ubiquitin assoc 99.2 9.1E-12 3.1E-16 101.1 5.2 48 142-189 27-74 (83)
17 2g3q_A Protein YBL047C; endocy 99.2 1.5E-11 5.3E-16 87.5 5.3 41 274-314 2-42 (43)
18 1ify_A HHR23A, UV excision rep 99.2 8.2E-12 2.8E-16 91.6 3.7 41 144-184 8-48 (49)
19 1dv0_A DNA repair protein HHR2 99.2 7.3E-12 2.5E-16 91.2 3.1 44 275-318 3-46 (47)
20 1wgn_A UBAP1, ubiquitin associ 99.2 1.4E-11 4.8E-16 93.6 4.3 41 145-185 20-60 (63)
21 1wiv_A UBP14, ubiquitin-specif 99.2 2.2E-11 7.6E-16 96.5 5.2 45 142-186 27-71 (73)
22 3ihp_A Ubiquitin carboxyl-term 99.2 1.9E-11 6.5E-16 135.7 6.4 104 215-318 651-762 (854)
23 1wji_A Tudor domain containing 99.1 3.6E-11 1.2E-15 92.7 5.6 45 142-186 7-51 (63)
24 2ekk_A UBA domain from E3 ubiq 99.1 2.6E-11 8.8E-16 88.0 4.5 42 141-183 6-47 (47)
25 1veg_A NEDD8 ultimate buster-1 99.1 5.3E-11 1.8E-15 96.5 5.9 47 273-319 26-72 (83)
26 1vek_A UBP14, ubiquitin-specif 99.1 4.4E-11 1.5E-15 97.3 5.3 50 140-189 25-75 (84)
27 2cpw_A CBL-interacting protein 99.1 5.3E-11 1.8E-15 92.1 4.7 44 275-318 18-62 (64)
28 2crn_A Ubash3A protein; compac 99.1 7E-11 2.4E-15 91.4 4.3 45 274-318 7-52 (64)
29 2ekk_A UBA domain from E3 ubiq 99.1 1.1E-10 3.7E-15 84.7 4.2 41 274-315 7-47 (47)
30 2dak_A Ubiquitin carboxyl-term 99.0 9.5E-11 3.3E-15 90.2 3.9 44 274-317 7-50 (63)
31 1ify_A HHR23A, UV excision rep 99.0 1.5E-10 5.1E-15 84.9 4.7 40 275-314 7-46 (49)
32 1whc_A RSGI RUH-027, UBA/UBX 3 99.0 1.6E-10 5.4E-15 89.4 5.0 45 274-318 7-52 (64)
33 1veg_A NEDD8 ultimate buster-1 99.0 2E-10 6.8E-15 93.1 5.6 46 140-185 25-70 (83)
34 1vg5_A RSGI RUH-014, rhomboid 99.0 3.4E-10 1.2E-14 89.7 6.1 44 274-317 27-70 (73)
35 2dai_A Ubadc1, ubiquitin assoc 99.0 3.6E-10 1.2E-14 91.7 5.5 45 274-318 27-71 (83)
36 1vg5_A RSGI RUH-014, rhomboid 99.0 4.1E-10 1.4E-14 89.2 5.7 43 143-185 28-70 (73)
37 2knz_A Ubiquilin-4; cytoplasm, 99.0 4.5E-10 1.5E-14 83.6 5.4 39 145-183 12-51 (53)
38 2jy5_A Ubiquilin-1; UBA, alter 99.0 5.2E-10 1.8E-14 83.0 5.6 40 276-315 12-52 (52)
39 1dv0_A DNA repair protein HHR2 99.0 7E-11 2.4E-15 86.0 0.9 43 144-186 4-46 (47)
40 2dkl_A Trinucleotide repeat co 99.0 2.3E-10 7.9E-15 93.2 3.5 45 143-187 20-64 (85)
41 1z96_A DNA-damage, UBA-domain 99.0 5.5E-10 1.9E-14 77.8 4.9 36 145-180 5-40 (40)
42 2jy5_A Ubiquilin-1; UBA, alter 99.0 6.5E-10 2.2E-14 82.5 5.1 39 145-183 13-52 (52)
43 2knz_A Ubiquilin-4; cytoplasm, 98.9 8.3E-10 2.8E-14 82.2 5.6 39 277-315 12-51 (53)
44 1vek_A UBP14, ubiquitin-specif 98.9 1.2E-09 4E-14 88.9 6.0 44 274-317 27-71 (84)
45 1z96_A DNA-damage, UBA-domain 98.9 1.7E-09 5.9E-14 75.2 5.4 37 276-312 4-40 (40)
46 2dkl_A Trinucleotide repeat co 98.9 1.5E-09 5.2E-14 88.4 5.3 44 274-317 19-62 (85)
47 2bwb_A Ubiquitin-like protein 98.9 2.1E-09 7.1E-14 77.9 5.5 38 145-182 8-46 (46)
48 2qsf_X RAD23, UV excision repa 98.9 6.3E-09 2.2E-13 94.8 9.1 86 231-316 36-170 (171)
49 2bwb_A Ubiquitin-like protein 98.9 3E-09 1E-13 77.0 5.5 38 277-314 8-46 (46)
50 4ae4_A Ubiquitin-associated pr 98.8 6.3E-08 2.1E-12 83.4 13.1 36 216-251 76-111 (118)
51 1vej_A Riken cDNA 4931431F19; 98.8 5.5E-09 1.9E-13 82.9 5.7 42 276-317 29-71 (74)
52 2dah_A Ubiquilin-3; UBA domain 98.8 4.1E-09 1.4E-13 78.8 4.4 41 277-317 10-51 (54)
53 2dah_A Ubiquilin-3; UBA domain 98.8 5.2E-09 1.8E-13 78.3 4.9 41 145-185 10-51 (54)
54 1vej_A Riken cDNA 4931431F19; 98.8 4.5E-09 1.6E-13 83.4 4.8 41 145-185 30-71 (74)
55 1wr1_B Ubiquitin-like protein 98.8 6.2E-09 2.1E-13 79.0 5.2 39 145-183 18-57 (58)
56 1wr1_B Ubiquitin-like protein 98.8 5.4E-09 1.9E-13 79.3 4.8 39 277-315 18-57 (58)
57 2dna_A Unnamed protein product 98.8 7.1E-09 2.4E-13 80.7 5.3 43 277-319 20-63 (67)
58 2dna_A Unnamed protein product 98.7 6.4E-09 2.2E-13 81.0 4.5 41 145-185 20-61 (67)
59 2ooa_A E3 ubiquitin-protein li 98.7 2.9E-08 9.8E-13 73.1 5.3 37 277-313 12-48 (52)
60 2ooa_A E3 ubiquitin-protein li 98.6 4.6E-08 1.6E-12 71.9 5.7 37 145-181 12-48 (52)
61 2d9s_A CBL E3 ubiquitin protei 98.6 6.2E-08 2.1E-12 71.6 4.8 40 275-314 8-47 (53)
62 2cwb_A Chimera of immunoglobul 98.5 9.7E-08 3.3E-12 80.9 5.7 41 276-316 66-107 (108)
63 2juj_A E3 ubiquitin-protein li 98.5 1.5E-07 5.1E-12 69.8 4.9 38 145-182 8-45 (56)
64 2juj_A E3 ubiquitin-protein li 98.4 1.5E-07 5E-12 69.8 4.4 40 275-314 6-45 (56)
65 2d9s_A CBL E3 ubiquitin protei 98.4 2.6E-07 8.9E-12 68.3 5.6 39 144-182 9-47 (53)
66 2cwb_A Chimera of immunoglobul 98.4 4.2E-07 1.4E-11 77.0 5.6 39 145-183 67-106 (108)
67 2cos_A Serine/threonine protei 98.3 6.9E-07 2.4E-11 66.2 4.6 38 214-251 7-45 (54)
68 2oo9_A E3 ubiquitin-protein li 98.3 1E-06 3.5E-11 63.0 5.1 38 277-314 5-42 (46)
69 2oo9_A E3 ubiquitin-protein li 98.3 1.3E-06 4.4E-11 62.5 5.5 37 145-181 5-41 (46)
70 2cos_A Serine/threonine protei 98.2 1.1E-06 3.9E-11 65.0 4.6 39 142-180 7-46 (54)
71 1oqy_A HHR23A, UV excision rep 98.2 1.1E-06 3.7E-11 89.0 6.1 46 275-320 167-212 (368)
72 1wj7_A Hypothetical protein (R 98.0 5.7E-06 1.9E-10 69.5 4.9 41 145-185 40-81 (104)
73 3k9o_A Ubiquitin-conjugating e 97.9 1.2E-05 4E-10 74.8 5.4 39 276-314 163-201 (201)
74 2cp8_A NEXT to BRCA1 gene 1 pr 97.8 1.3E-05 4.5E-10 59.7 4.0 42 276-317 9-51 (54)
75 3k9o_A Ubiquitin-conjugating e 97.8 2.2E-05 7.5E-10 72.9 5.7 38 145-182 164-201 (201)
76 2cp8_A NEXT to BRCA1 gene 1 pr 97.7 2.5E-05 8.5E-10 58.2 3.6 40 144-183 9-49 (54)
77 2qsf_X RAD23, UV excision repa 97.7 2.7E-05 9.3E-10 70.9 4.4 39 146-184 132-170 (171)
78 1wj7_A Hypothetical protein (R 97.6 5.1E-05 1.7E-09 63.7 5.2 45 277-322 40-85 (104)
79 4dbg_B Ring finger protein 31; 97.4 0.0011 3.8E-08 59.4 10.4 110 155-313 28-140 (162)
80 4dbg_B Ring finger protein 31; 97.3 0.00051 1.7E-08 61.6 7.5 68 155-255 74-142 (162)
81 3e46_A Ubiquitin-conjugating e 97.1 0.00051 1.7E-08 66.2 5.5 38 277-314 216-253 (253)
82 3ro3_A PINS homolog, G-protein 97.0 0.014 4.8E-07 46.9 13.1 147 3-182 8-155 (164)
83 4gcn_A Protein STI-1; structur 97.0 0.0074 2.5E-07 49.9 11.6 117 3-152 7-123 (127)
84 3gw4_A Uncharacterized protein 96.9 0.034 1.2E-06 47.4 15.3 149 3-183 25-174 (203)
85 3nf1_A KLC 1, kinesin light ch 96.9 0.02 7E-07 51.8 14.0 152 4-183 69-222 (311)
86 3ro3_A PINS homolog, G-protein 96.8 0.018 6.1E-07 46.3 12.2 114 3-140 48-161 (164)
87 3edt_B KLC 2, kinesin light ch 96.8 0.019 6.5E-07 50.9 13.4 151 4-182 43-195 (283)
88 4gco_A Protein STI-1; structur 96.7 0.0058 2E-07 50.7 8.7 98 4-137 13-110 (126)
89 3nf1_A KLC 1, kinesin light ch 96.7 0.023 7.9E-07 51.4 13.1 151 4-182 27-179 (311)
90 3e46_A Ubiquitin-conjugating e 96.7 0.0019 6.6E-08 62.1 5.8 37 145-181 216-252 (253)
91 3ro2_A PINS homolog, G-protein 96.6 0.011 3.7E-07 53.6 10.4 157 4-182 83-249 (338)
92 1hh8_A P67PHOX, NCF-2, neutrop 96.5 0.018 6.3E-07 49.9 10.9 98 4-140 6-103 (213)
93 3q15_A PSP28, response regulat 96.5 0.042 1.5E-06 52.9 14.1 147 6-183 103-249 (378)
94 3ulq_A Response regulator aspa 96.5 0.05 1.7E-06 52.3 14.4 145 7-182 106-250 (383)
95 3ro2_A PINS homolog, G-protein 96.4 0.041 1.4E-06 49.7 12.8 147 4-182 183-329 (338)
96 2cp9_A EF-TS, EF-TSMT, elongat 96.4 0.0043 1.5E-07 47.7 5.1 39 142-180 7-46 (64)
97 3sf4_A G-protein-signaling mod 96.4 0.054 1.8E-06 51.0 13.8 147 4-182 187-333 (406)
98 3edt_B KLC 2, kinesin light ch 96.3 0.06 2.1E-06 47.6 13.3 114 4-137 85-198 (283)
99 3rkv_A Putative peptidylprolyl 96.3 0.047 1.6E-06 45.9 11.7 110 3-137 10-126 (162)
100 3gw4_A Uncharacterized protein 96.2 0.049 1.7E-06 46.4 11.6 116 3-141 65-180 (203)
101 3sf4_A G-protein-signaling mod 96.2 0.03 1E-06 52.8 11.1 156 5-182 88-253 (406)
102 4a1s_A PINS, partner of inscut 96.2 0.057 1.9E-06 51.6 13.2 148 4-184 223-371 (411)
103 3sz7_A HSC70 cochaperone (SGT) 96.1 0.026 9E-07 47.6 9.3 99 4-138 11-109 (164)
104 3upv_A Heat shock protein STI1 96.1 0.026 8.9E-07 45.2 8.7 99 4-138 4-102 (126)
105 4i17_A Hypothetical protein; T 96.0 0.24 8.1E-06 43.5 15.4 134 6-182 9-143 (228)
106 3ulq_A Response regulator aspa 96.0 0.17 5.8E-06 48.5 15.4 149 3-182 142-290 (383)
107 2cp9_A EF-TS, EF-TSMT, elongat 96.0 0.0077 2.6E-07 46.3 4.5 38 214-251 7-45 (64)
108 1wgl_A TOLL-interacting protei 95.9 0.0084 2.9E-07 45.3 4.5 44 274-317 7-52 (59)
109 3uq3_A Heat shock protein STI1 95.9 0.26 8.9E-06 43.0 14.9 104 4-137 5-108 (258)
110 3q15_A PSP28, response regulat 95.9 0.29 9.9E-06 46.9 16.5 144 4-181 182-328 (378)
111 4a1s_A PINS, partner of inscut 95.8 0.12 4.2E-06 49.2 13.6 147 4-182 166-329 (411)
112 2xev_A YBGF; tetratricopeptide 95.7 0.11 3.6E-06 41.2 10.8 106 4-139 2-107 (129)
113 3q49_B STIP1 homology and U bo 95.6 0.085 2.9E-06 42.2 9.9 100 4-139 9-108 (137)
114 1elr_A TPR2A-domain of HOP; HO 95.6 0.23 7.8E-06 38.4 12.0 105 4-137 4-108 (131)
115 1hz4_A MALT regulatory protein 95.4 0.29 9.8E-06 46.4 14.4 146 5-181 54-199 (373)
116 2ifu_A Gamma-SNAP; membrane fu 95.3 0.2 7E-06 47.1 12.7 144 5-182 77-221 (307)
117 1ihg_A Cyclophilin 40; ppiase 95.1 0.11 3.8E-06 51.2 10.6 110 4-138 223-337 (370)
118 3uq3_A Heat shock protein STI1 95.0 0.43 1.5E-05 41.6 13.4 146 5-181 39-198 (258)
119 1elw_A TPR1-domain of HOP; HOP 95.0 0.13 4.6E-06 39.0 8.9 97 5-137 5-101 (118)
120 1otr_A Protein CUE2; protein-p 95.0 0.027 9.1E-07 41.0 4.3 39 145-183 5-45 (49)
121 2lni_A Stress-induced-phosphop 94.8 0.12 4.2E-06 40.4 8.4 99 4-138 16-114 (133)
122 1a17_A Serine/threonine protei 94.8 0.11 3.8E-06 42.4 8.3 99 4-138 13-111 (166)
123 1wgl_A TOLL-interacting protei 94.7 0.034 1.2E-06 41.9 4.5 44 141-184 6-51 (59)
124 4fp9_B Mterf domain-containing 94.7 0.35 1.2E-05 48.1 13.2 131 145-317 47-197 (335)
125 3qky_A Outer membrane assembly 94.7 0.41 1.4E-05 43.2 12.6 147 5-181 16-173 (261)
126 3n71_A Histone lysine methyltr 94.7 0.17 5.8E-06 52.5 11.2 124 5-152 310-438 (490)
127 3vtx_A MAMA; tetratricopeptide 94.6 0.15 5.1E-06 43.2 8.9 143 5-180 6-165 (184)
128 3as5_A MAMA; tetratricopeptide 94.6 0.84 2.9E-05 37.2 13.3 126 4-180 8-134 (186)
129 2vyi_A SGTA protein; chaperone 94.5 0.22 7.4E-06 38.4 9.0 98 5-138 13-110 (131)
130 2fo7_A Synthetic consensus TPR 94.4 0.81 2.8E-05 35.0 12.1 126 5-181 2-128 (136)
131 1q02_A Sequestosome 1; helical 94.4 0.024 8.2E-07 41.6 2.7 35 146-180 12-48 (52)
132 4b4t_Q 26S proteasome regulato 94.1 0.24 8.1E-06 47.7 10.2 162 7-180 7-199 (434)
133 2yhc_A BAMD, UPF0169 lipoprote 94.1 0.48 1.6E-05 42.2 11.6 122 4-140 4-128 (225)
134 2xcb_A PCRH, regulatory protei 94.0 0.29 9.9E-06 40.3 9.2 98 6-139 20-117 (142)
135 1kt0_A FKBP51, 51 kDa FK506-bi 94.0 0.18 6.1E-06 51.0 9.3 109 4-137 268-380 (457)
136 2ho1_A Type 4 fimbrial biogene 93.9 0.49 1.7E-05 41.6 11.2 129 4-180 37-165 (252)
137 2kck_A TPR repeat; tetratricop 93.9 0.25 8.5E-06 37.2 8.0 99 5-137 7-106 (112)
138 2fbn_A 70 kDa peptidylprolyl i 93.9 0.36 1.2E-05 41.8 10.0 109 4-137 38-151 (198)
139 2vq2_A PILW, putative fimbrial 93.9 0.77 2.6E-05 39.0 12.0 129 5-181 9-138 (225)
140 2dba_A Smooth muscle cell asso 93.9 0.49 1.7E-05 37.7 10.1 102 4-138 28-129 (148)
141 2gw1_A Mitochondrial precursor 93.7 0.18 6.3E-06 49.1 8.7 96 4-136 6-101 (514)
142 1hz4_A MALT regulatory protein 93.7 2.1 7.2E-05 40.3 15.9 112 4-140 14-125 (373)
143 1qqe_A Vesicular transport pro 93.6 1.6 5.3E-05 40.6 14.5 142 7-180 40-182 (292)
144 1otr_A Protein CUE2; protein-p 93.5 0.076 2.6E-06 38.6 4.0 38 277-314 5-44 (49)
145 1p5q_A FKBP52, FK506-binding p 93.5 0.32 1.1E-05 46.8 9.8 110 4-138 147-260 (336)
146 2y4t_A DNAJ homolog subfamily 93.5 0.43 1.5E-05 45.8 10.7 96 5-136 27-122 (450)
147 3u3w_A Transcriptional activat 93.3 1.5 5.1E-05 40.5 13.8 109 10-141 121-229 (293)
148 3u4t_A TPR repeat-containing p 93.2 1.9 6.5E-05 38.1 14.0 129 6-182 5-134 (272)
149 3hym_B Cell division cycle pro 93.2 3.1 0.00011 37.5 15.5 132 7-180 128-260 (330)
150 3ieg_A DNAJ homolog subfamily 93.2 0.92 3.2E-05 41.4 12.0 96 6-137 5-100 (359)
151 3qww_A SET and MYND domain-con 93.1 0.29 9.8E-06 50.0 9.2 108 7-138 301-412 (433)
152 1q02_A Sequestosome 1; helical 93.1 0.07 2.4E-06 39.2 3.2 36 277-312 11-48 (52)
153 3ieg_A DNAJ homolog subfamily 92.9 1.4 4.8E-05 40.1 12.9 137 6-181 122-259 (359)
154 2q7f_A YRRB protein; TPR, prot 92.9 0.88 3E-05 39.3 11.0 128 3-181 22-150 (243)
155 2ho1_A Type 4 fimbrial biogene 92.9 2.6 8.9E-05 36.8 14.2 125 6-181 73-200 (252)
156 2dhy_A CUE domain-containing p 92.9 0.12 4E-06 40.0 4.4 43 275-317 17-61 (67)
157 2pwq_A Ubiquitin conjugating e 92.8 0.02 6.7E-07 53.8 0.0 38 277-314 178-215 (216)
158 1hxi_A PEX5, peroxisome target 92.7 0.31 1E-05 39.6 7.2 95 6-136 19-113 (121)
159 4eqf_A PEX5-related protein; a 92.5 1.1 3.9E-05 41.8 11.9 28 6-33 67-94 (365)
160 2qfc_A PLCR protein; TPR, HTH, 92.4 1.8 6.1E-05 39.9 12.9 104 10-138 121-226 (293)
161 3qwp_A SET and MYND domain-con 92.3 1.3 4.5E-05 44.8 12.8 131 9-166 292-427 (429)
162 4g1t_A Interferon-induced prot 92.1 0.64 2.2E-05 45.2 9.9 111 7-137 54-167 (472)
163 2qfc_A PLCR protein; TPR, HTH, 92.0 1.1 3.9E-05 41.2 11.2 114 4-140 155-269 (293)
164 2l6j_A TPR repeat-containing p 92.0 0.23 7.9E-06 37.9 5.3 100 4-133 4-103 (111)
165 1hh8_A P67PHOX, NCF-2, neutrop 91.9 0.81 2.8E-05 39.2 9.3 114 5-138 38-151 (213)
166 1xnf_A Lipoprotein NLPI; TPR, 91.7 1.4 4.6E-05 38.9 10.9 98 5-138 44-141 (275)
167 1qqe_A Vesicular transport pro 91.7 3.5 0.00012 38.1 14.1 146 4-182 77-225 (292)
168 3hym_B Cell division cycle pro 91.6 4.7 0.00016 36.2 14.5 26 6-31 24-49 (330)
169 2xpi_A Anaphase-promoting comp 91.5 3 0.0001 41.6 14.3 60 113-180 480-540 (597)
170 1fch_A Peroxisomal targeting s 91.5 2.4 8.1E-05 39.2 12.7 28 110-137 219-246 (368)
171 1na0_A Designed protein CTPR3; 91.3 1.6 5.6E-05 33.0 9.7 98 4-137 9-106 (125)
172 2ifu_A Gamma-SNAP; membrane fu 91.3 1.5 5.2E-05 40.9 11.3 143 7-182 39-181 (307)
173 4i17_A Hypothetical protein; T 91.3 1.3 4.6E-05 38.6 10.2 102 6-136 44-145 (228)
174 2vgx_A Chaperone SYCD; alterna 91.2 0.9 3.1E-05 38.1 8.7 98 6-139 23-120 (148)
175 2pwq_A Ubiquitin conjugating e 91.0 0.041 1.4E-06 51.6 0.0 38 145-182 178-215 (216)
176 3as5_A MAMA; tetratricopeptide 90.9 2.3 7.7E-05 34.6 10.7 98 5-138 43-140 (186)
177 1aip_C EF-TS, elongation facto 90.9 0.24 8.2E-06 45.8 5.0 37 146-182 5-42 (196)
178 4eqf_A PEX5-related protein; a 90.7 0.8 2.7E-05 42.9 8.7 67 46-137 96-162 (365)
179 1tr8_A Conserved protein (MTH1 90.7 0.24 8.2E-06 41.3 4.4 39 141-179 62-101 (102)
180 1xb2_B EF-TS, elongation facto 90.7 0.24 8.2E-06 48.5 5.0 37 146-182 6-43 (291)
181 3gyz_A Chaperone protein IPGC; 90.5 0.72 2.5E-05 39.6 7.5 97 6-138 38-134 (151)
182 3n71_A Histone lysine methyltr 90.3 1.3 4.6E-05 45.7 10.7 85 3-97 350-438 (490)
183 3urz_A Uncharacterized protein 90.3 0.63 2.2E-05 41.0 7.1 107 6-137 6-117 (208)
184 1xb2_B EF-TS, elongation facto 90.2 0.17 5.9E-06 49.5 3.5 35 217-251 5-40 (291)
185 3u3w_A Transcriptional activat 90.1 2.2 7.4E-05 39.4 11.0 112 5-139 156-268 (293)
186 2y4t_A DNAJ homolog subfamily 90.1 2.6 9E-05 40.3 11.9 138 6-182 145-283 (450)
187 2c2l_A CHIP, carboxy terminus 89.9 1.9 6.4E-05 40.1 10.4 99 4-138 4-102 (281)
188 2vq2_A PILW, putative fimbrial 89.8 6.9 0.00024 32.9 13.2 127 6-181 44-172 (225)
189 3cv0_A Peroxisome targeting si 89.8 0.89 3.1E-05 41.1 7.9 97 6-138 23-119 (327)
190 2q7f_A YRRB protein; TPR, prot 89.7 1.6 5.4E-05 37.7 9.2 98 5-138 58-155 (243)
191 3vtx_A MAMA; tetratricopeptide 89.5 1 3.5E-05 37.8 7.6 25 111-135 144-168 (184)
192 1aip_C EF-TS, elongation facto 89.4 0.33 1.1E-05 44.9 4.6 34 218-251 5-39 (196)
193 3qky_A Outer membrane assembly 89.4 2.3 7.8E-05 38.1 10.3 118 4-140 52-180 (261)
194 4b4t_Q 26S proteasome regulato 89.2 3.4 0.00012 39.4 12.0 112 6-140 137-248 (434)
195 1a17_A Serine/threonine protei 89.1 1.2 4.1E-05 36.1 7.5 102 6-141 49-150 (166)
196 2fo7_A Synthetic consensus TPR 88.8 2.3 7.8E-05 32.3 8.6 95 6-136 37-131 (136)
197 2pl2_A Hypothetical conserved 88.6 7.9 0.00027 34.0 13.2 26 6-31 7-32 (217)
198 4f3v_A ESX-1 secretion system 88.5 3.4 0.00012 39.9 11.4 79 56-157 173-253 (282)
199 1v92_A NSFL1 cofactor P47; 3-h 88.3 0.64 2.2E-05 32.3 4.5 39 278-316 7-46 (46)
200 3fp2_A TPR repeat-containing p 88.3 0.7 2.4E-05 45.4 6.5 93 4-132 25-117 (537)
201 2xpi_A Anaphase-promoting comp 88.0 11 0.00038 37.4 15.3 56 111-180 519-574 (597)
202 2e2e_A Formate-dependent nitri 88.0 3.3 0.00011 34.6 9.8 98 6-137 46-144 (177)
203 1ouv_A Conserved hypothetical 88.0 11 0.00038 33.6 13.9 120 6-182 8-140 (273)
204 1fch_A Peroxisomal targeting s 87.7 1.5 5.2E-05 40.6 8.1 97 6-138 66-162 (368)
205 3qwp_A SET and MYND domain-con 87.2 2.1 7E-05 43.4 9.3 85 3-97 328-416 (429)
206 1tte_A Ubiquitin-conjugating e 87.1 0.39 1.3E-05 44.9 3.5 29 275-303 168-196 (215)
207 1vdl_A Ubiquitin carboxyl-term 87.0 1.6 5.5E-05 34.3 6.3 44 277-320 25-70 (80)
208 2vsy_A XCC0866; transferase, g 86.9 8.3 0.00028 39.1 13.7 98 5-138 24-121 (568)
209 3u4t_A TPR repeat-containing p 86.9 3.1 0.00011 36.7 9.4 31 108-138 221-251 (272)
210 2if4_A ATFKBP42; FKBP-like, al 86.7 0.69 2.4E-05 44.6 5.3 108 4-136 179-292 (338)
211 2yhc_A BAMD, UPF0169 lipoprote 86.4 10 0.00036 33.2 12.6 147 6-179 43-207 (225)
212 1tte_A Ubiquitin-conjugating e 86.3 0.46 1.6E-05 44.4 3.6 30 142-171 167-196 (215)
213 1w3b_A UDP-N-acetylglucosamine 86.3 3.5 0.00012 38.8 10.0 23 114-136 141-163 (388)
214 4gyw_A UDP-N-acetylglucosamine 85.9 2.5 8.7E-05 45.7 9.7 95 6-136 11-105 (723)
215 3qww_A SET and MYND domain-con 85.8 2.6 8.8E-05 42.9 9.2 86 3-98 339-428 (433)
216 4abn_A Tetratricopeptide repea 85.5 1.9 6.4E-05 43.5 7.9 98 4-138 102-209 (474)
217 1xnf_A Lipoprotein NLPI; TPR, 85.4 3.4 0.00012 36.3 8.8 61 6-80 79-139 (275)
218 2gw1_A Mitochondrial precursor 85.3 7.7 0.00026 37.4 12.0 81 49-137 186-266 (514)
219 3cv0_A Peroxisome targeting si 85.1 3.9 0.00013 36.7 9.2 24 115-138 247-270 (327)
220 2pl2_A Hypothetical conserved 84.5 7.5 0.00026 34.1 10.7 45 121-180 97-142 (217)
221 3ma5_A Tetratricopeptide repea 84.4 4.5 0.00015 31.1 8.2 64 5-82 8-71 (100)
222 1w3b_A UDP-N-acetylglucosamine 84.4 5.2 0.00018 37.6 10.1 50 5-65 170-219 (388)
223 2dhy_A CUE domain-containing p 84.0 1.1 3.8E-05 34.4 4.2 36 216-251 18-55 (67)
224 1ouv_A Conserved hypothetical 83.9 19 0.00064 32.0 13.2 118 6-180 40-174 (273)
225 3fp2_A TPR repeat-containing p 83.0 12 0.00043 36.3 12.5 99 3-138 242-340 (537)
226 1tr8_A Conserved protein (MTH1 83.0 1.5 5E-05 36.5 4.8 38 214-251 63-101 (102)
227 1ixs_A Holliday junction DNA h 82.4 2.7 9.1E-05 31.6 5.7 24 145-168 18-41 (62)
228 4ga2_A E3 SUMO-protein ligase 82.4 4.9 0.00017 33.3 8.1 120 15-173 8-135 (150)
229 2dal_A Protein KIAA0794; FAS a 82.1 2.5 8.7E-05 31.6 5.5 39 277-315 16-55 (62)
230 3mkr_A Coatomer subunit epsilo 81.5 16 0.00055 33.9 12.2 57 6-81 103-159 (291)
231 4fp9_B Mterf domain-containing 80.4 4.2 0.00014 40.3 8.0 95 218-314 48-158 (335)
232 2hr2_A Hypothetical protein; a 80.4 22 0.00075 31.3 11.9 120 3-138 10-132 (159)
233 1v92_A NSFL1 cofactor P47; 3-h 80.3 1.9 6.5E-05 29.8 4.0 37 218-254 7-45 (46)
234 2kc7_A BFR218_protein; tetratr 80.3 7.5 0.00026 28.9 7.8 61 5-79 1-62 (99)
235 1na3_A Designed protein CTPR2; 78.9 9.9 0.00034 27.3 7.9 62 5-80 10-71 (91)
236 2dzl_A Protein FAM100B; UBA-li 78.9 3.8 0.00013 31.2 5.5 40 278-317 19-59 (66)
237 2dam_A ETEA protein; KIAA0887, 78.6 3.5 0.00012 31.4 5.3 40 277-316 19-60 (67)
238 2xev_A YBGF; tetratricopeptide 78.5 7.3 0.00025 30.1 7.5 66 5-81 40-105 (129)
239 1p3q_Q VPS9P, vacuolar protein 77.3 0.89 3E-05 33.6 1.5 38 276-313 12-51 (54)
240 3urz_A Uncharacterized protein 77.1 3.2 0.00011 36.3 5.4 57 9-79 59-115 (208)
241 2dal_A Protein KIAA0794; FAS a 77.1 3.1 0.00011 31.1 4.5 38 218-255 17-56 (62)
242 2dzl_A Protein FAM100B; UBA-li 76.8 3.9 0.00013 31.1 5.0 38 218-255 19-58 (66)
243 2di0_A Activating signal coint 76.5 7 0.00024 30.4 6.4 40 277-316 14-55 (71)
244 3m66_A Mterf3, mterf domain-co 76.2 10 0.00034 35.5 9.0 159 146-317 7-196 (270)
245 1elw_A TPR1-domain of HOP; HOP 75.8 11 0.00036 28.0 7.4 58 6-77 40-97 (118)
246 1wao_1 Serine/threonine protei 75.4 3 0.0001 42.3 5.3 99 4-138 6-104 (477)
247 3k9i_A BH0479 protein; putativ 74.6 14 0.00046 28.8 8.1 61 5-79 28-88 (117)
248 2lva_A Ubiquitin carboxyl-term 76.6 0.63 2.1E-05 40.0 0.0 44 278-321 20-65 (129)
249 4gyw_A UDP-N-acetylglucosamine 72.4 9.6 0.00033 41.2 8.7 97 5-137 44-140 (723)
250 4abn_A Tetratricopeptide repea 71.7 25 0.00086 35.1 11.1 104 7-139 173-289 (474)
251 2kat_A Uncharacterized protein 71.2 19 0.00065 27.6 8.1 65 5-83 20-84 (115)
252 2r5s_A Uncharacterized protein 71.2 8.7 0.0003 32.2 6.5 58 7-78 9-66 (176)
253 3m66_A Mterf3, mterf domain-co 70.8 9.8 0.00034 35.6 7.4 81 218-300 43-136 (270)
254 4g1t_A Interferon-induced prot 70.3 20 0.00068 34.4 9.7 139 6-181 249-397 (472)
255 2v5f_A Prolyl 4-hydroxylase su 69.8 18 0.00063 28.1 7.8 68 4-78 5-72 (104)
256 2kck_A TPR repeat; tetratricop 69.5 12 0.00042 27.4 6.4 60 6-77 42-102 (112)
257 2vyi_A SGTA protein; chaperone 69.4 18 0.00063 27.0 7.6 62 5-80 47-108 (131)
258 1ixs_A Holliday junction DNA h 69.3 4.4 0.00015 30.4 3.7 25 276-300 17-41 (62)
259 1zza_A Stannin, AG8_1; helix, 69.2 0.95 3.2E-05 35.6 -0.1 17 54-70 32-48 (90)
260 1na0_A Designed protein CTPR3; 68.9 21 0.00073 26.4 7.8 60 6-79 45-104 (125)
261 4ga2_A E3 SUMO-protein ligase 68.0 6.7 0.00023 32.5 5.0 93 10-138 37-130 (150)
262 3mva_O Transcription terminati 67.5 22 0.00075 34.6 9.4 90 144-242 19-112 (343)
263 2pzi_A Probable serine/threoni 67.5 7.6 0.00026 41.1 6.5 60 6-79 435-494 (681)
264 3sz7_A HSC70 cochaperone (SGT) 66.9 19 0.00067 29.4 7.8 61 5-79 46-106 (164)
265 2di0_A Activating signal coint 66.5 8.9 0.00031 29.8 5.0 38 146-183 15-54 (71)
266 3upv_A Heat shock protein STI1 66.1 22 0.00075 27.5 7.6 64 5-82 39-102 (126)
267 2lni_A Stress-induced-phosphop 64.2 19 0.00065 27.3 6.8 61 5-79 51-111 (133)
268 1elr_A TPR2A-domain of HOP; HO 63.8 29 0.001 25.9 7.7 69 5-80 39-107 (131)
269 2xcb_A PCRH, regulatory protei 63.5 24 0.00084 28.3 7.6 63 6-82 54-116 (142)
270 2dba_A Smooth muscle cell asso 62.6 30 0.001 26.8 7.8 62 4-79 65-126 (148)
271 2dam_A ETEA protein; KIAA0887, 62.3 9.3 0.00032 29.0 4.3 34 218-251 20-55 (67)
272 2qho_B E3 ubiquitin-protein li 61.4 16 0.00054 26.5 5.0 42 276-317 9-52 (53)
273 3k9i_A BH0479 protein; putativ 60.3 9.3 0.00032 29.7 4.3 89 17-138 3-91 (117)
274 3mkq_A Coatomer beta'-subunit; 59.9 22 0.00076 36.9 8.2 33 63-97 685-717 (814)
275 2vgx_A Chaperone SYCD; alterna 59.5 30 0.001 28.4 7.6 61 6-80 57-117 (148)
276 2c2l_A CHIP, carboxy terminus 58.8 21 0.00072 32.8 7.1 65 5-83 39-103 (281)
277 2vsy_A XCC0866; transferase, g 58.6 62 0.0021 32.5 11.2 98 6-139 59-159 (568)
278 2h6f_A Protein farnesyltransfe 58.5 94 0.0032 30.3 12.2 118 6-137 99-229 (382)
279 3q49_B STIP1 homology and U bo 58.5 37 0.0013 26.2 7.6 65 5-83 44-108 (137)
280 1klx_A Cysteine rich protein B 57.9 39 0.0013 27.5 8.0 109 17-180 8-121 (138)
281 1xi4_A Clathrin heavy chain; a 57.6 1.4E+02 0.0048 35.5 14.8 131 6-169 1107-1248(1630)
282 4gco_A Protein STI-1; structur 57.0 37 0.0013 27.0 7.6 61 5-79 48-108 (126)
283 3mv2_B Coatomer subunit epsilo 56.6 55 0.0019 31.8 9.9 129 7-180 103-235 (310)
284 3gyz_A Chaperone protein IPGC; 55.9 33 0.0011 28.9 7.3 63 5-81 71-133 (151)
285 1b89_A Protein (clathrin heavy 55.8 25 0.00087 36.1 7.6 17 118-134 132-148 (449)
286 2wpv_A GET4, UPF0363 protein Y 55.4 1.5E+02 0.0053 28.7 13.8 155 11-179 40-211 (312)
287 3rjv_A Putative SEL1 repeat pr 54.9 1E+02 0.0035 26.5 12.2 59 6-78 20-79 (212)
288 3e21_A HFAF1, FAS-associated f 54.7 15 0.00052 25.9 4.0 34 277-310 6-41 (45)
289 3mkr_A Coatomer subunit epsilo 53.7 1.3E+02 0.0046 27.5 14.7 90 9-137 70-159 (291)
290 2l6j_A TPR repeat-containing p 52.8 24 0.00083 26.1 5.4 55 6-65 40-94 (111)
291 3avx_A Elongation factor TS, e 52.7 2.3 7.8E-05 49.1 -0.8 39 144-182 5-44 (1289)
292 3qou_A Protein YBBN; thioredox 52.5 15 0.00051 33.9 4.9 59 6-78 119-177 (287)
293 4gcn_A Protein STI-1; structur 52.4 47 0.0016 26.4 7.4 67 5-78 43-109 (127)
294 1p3q_Q VPS9P, vacuolar protein 52.2 6.1 0.00021 29.1 1.7 33 218-250 14-48 (54)
295 4b4t_R RPN7, 26S proteasome re 50.5 56 0.0019 32.6 9.1 107 3-136 130-236 (429)
296 3e7l_A Transcriptional regulat 49.9 8.8 0.0003 28.1 2.3 24 288-311 19-42 (63)
297 2ond_A Cleavage stimulation fa 49.1 1.5E+02 0.0053 26.8 12.8 25 6-30 136-160 (308)
298 1p5q_A FKBP52, FK506-binding p 49.0 1.6E+02 0.0055 27.5 11.8 108 48-180 146-254 (336)
299 3avx_A Elongation factor TS, e 47.4 2.3 8E-05 49.1 -1.8 36 217-252 6-42 (1289)
300 3mva_O Transcription terminati 47.4 2E+02 0.0068 27.6 17.3 153 81-240 56-224 (343)
301 2fbn_A 70 kDa peptidylprolyl i 47.1 59 0.002 27.3 7.6 61 5-79 89-149 (198)
302 2w84_A Peroxisomal membrane pr 45.5 49 0.0017 25.6 5.9 44 244-302 18-61 (70)
303 2h6f_A Protein farnesyltransfe 45.2 1E+02 0.0036 30.0 10.0 51 5-66 132-183 (382)
304 2lva_A Ubiquitin carboxyl-term 50.9 4.5 0.00016 34.7 0.0 36 218-253 20-57 (129)
305 1cuk_A RUVA protein; DNA repai 44.7 21 0.00072 32.7 4.5 24 145-168 161-184 (203)
306 1umq_A Photosynthetic apparatu 44.6 11 0.00039 29.6 2.3 24 288-311 41-64 (81)
307 3dfg_A Xcrecx, regulatory prot 44.0 1.6E+02 0.0054 25.5 13.5 72 218-299 86-158 (162)
308 4b4t_P 26S proteasome regulato 43.5 1.6E+02 0.0055 29.5 11.3 100 11-134 144-244 (445)
309 3ff5_A PEX14P, peroxisomal bio 43.4 50 0.0017 24.2 5.4 42 244-300 13-54 (54)
310 2ztd_A Holliday junction ATP-d 41.8 37 0.0013 31.4 5.7 69 87-168 119-188 (212)
311 2kat_A Uncharacterized protein 41.4 46 0.0016 25.2 5.5 67 47-138 17-83 (115)
312 1vdl_A Ubiquitin carboxyl-term 41.1 27 0.00092 27.4 3.8 36 218-253 26-63 (80)
313 1xi4_A Clathrin heavy chain; a 40.7 45 0.0015 39.5 7.3 109 11-145 1056-1171(1630)
314 1ihg_A Cyclophilin 40; ppiase 40.7 61 0.0021 31.4 7.4 62 5-80 274-335 (370)
315 3bee_A Putative YFRE protein; 40.1 39 0.0013 26.3 4.8 36 112-148 47-82 (93)
316 1b89_A Protein (clathrin heavy 38.6 53 0.0018 33.7 6.8 54 8-80 36-89 (449)
317 3rkv_A Putative peptidylprolyl 37.9 1.1E+02 0.0038 24.6 7.7 62 5-80 64-125 (162)
318 3e21_A HFAF1, FAS-associated f 37.8 31 0.0011 24.3 3.5 33 217-249 6-40 (45)
319 2p58_C Putative type III secre 37.0 38 0.0013 28.4 4.4 46 11-75 47-92 (116)
320 2uwj_G Type III export protein 36.1 40 0.0014 28.2 4.4 47 11-76 46-92 (115)
321 1na3_A Designed protein CTPR2; 35.6 60 0.002 22.8 5.0 28 6-33 45-72 (91)
322 3mkq_B Coatomer subunit alpha; 35.4 1.2E+02 0.0042 27.1 7.9 17 13-29 14-30 (177)
323 2qho_B E3 ubiquitin-protein li 35.1 88 0.003 22.6 5.4 44 141-184 6-51 (53)
324 1cuk_A RUVA protein; DNA repai 33.9 38 0.0013 30.9 4.4 25 276-300 160-184 (203)
325 3k6g_A Telomeric repeat-bindin 33.1 95 0.0033 25.7 6.1 32 284-315 22-53 (111)
326 2ooe_A Cleavage stimulation fa 33.1 3.6E+02 0.012 26.4 13.0 97 7-138 324-421 (530)
327 2pzi_A Probable serine/threoni 32.7 79 0.0027 33.2 7.2 94 6-136 469-562 (681)
328 3e4b_A ALGK; tetratricopeptide 31.7 3.7E+02 0.013 26.2 13.0 46 120-182 263-313 (452)
329 1kt0_A FKBP51, 51 kDa FK506-bi 31.0 3.9E+02 0.013 26.2 12.5 110 47-181 266-376 (457)
330 2if4_A ATFKBP42; FKBP-like, al 30.9 64 0.0022 30.5 5.7 59 6-78 232-290 (338)
331 1hxi_A PEX5, peroxisome target 30.9 97 0.0033 24.2 6.0 49 5-64 52-100 (121)
332 2ztd_A Holliday junction ATP-d 30.7 63 0.0022 29.8 5.3 25 276-300 164-188 (212)
333 1ntc_A Protein (nitrogen regul 30.4 16 0.00056 28.7 1.1 24 288-311 51-74 (91)
334 3txn_A 26S proteasome regulato 30.4 1.4E+02 0.0047 30.0 8.2 162 6-183 21-208 (394)
335 2v5f_A Prolyl 4-hydroxylase su 30.3 1.7E+02 0.0058 22.3 7.2 57 115-181 12-71 (104)
336 3ma5_A Tetratricopeptide repea 29.9 71 0.0024 24.0 4.8 64 48-136 6-69 (100)
337 4b4t_O 26S proteasome regulato 29.8 1.3E+02 0.0043 29.8 7.8 96 16-128 88-189 (393)
338 1eto_A FIS, factor for inversi 29.3 28 0.00094 28.2 2.3 24 288-311 58-81 (98)
339 1ufz_A Hypothetical protein BA 28.9 82 0.0028 25.1 4.9 37 146-182 39-75 (83)
340 1g2h_A Transcriptional regulat 28.0 28 0.00097 25.2 2.0 23 288-311 21-43 (61)
341 2hr2_A Hypothetical protein; a 27.8 1.2E+02 0.0041 26.5 6.4 29 5-33 58-86 (159)
342 1wao_1 Serine/threonine protei 27.3 1.3E+02 0.0046 29.9 7.6 62 5-80 41-102 (477)
343 3rjv_A Putative SEL1 repeat pr 26.7 83 0.0028 27.2 5.2 50 115-181 25-78 (212)
344 2vkj_A TM1634; membrane protei 25.2 49 0.0017 27.0 3.0 25 6-30 55-79 (106)
345 2xm6_A Protein corresponding t 24.9 4.7E+02 0.016 25.2 14.2 123 6-181 41-176 (490)
346 3h0l_B Aspartyl/glutamyl-tRNA( 23.8 6.1E+02 0.021 26.1 12.1 102 130-249 287-408 (478)
347 4g3o_A E3 ubiquitin-protein li 22.7 1.4E+02 0.0049 22.1 4.9 36 278-314 19-56 (58)
348 3pvs_A Replication-associated 22.0 4.5E+02 0.015 26.3 10.3 69 114-182 198-281 (447)
349 2f4m_B UV excision repair prot 21.6 54 0.0019 24.5 2.5 36 231-266 14-51 (61)
350 2pmr_A Uncharacterized protein 21.3 60 0.002 26.0 2.8 28 3-30 38-65 (87)
351 2kc7_A BFR218_protein; tetratr 20.6 71 0.0024 23.2 3.1 29 6-34 37-65 (99)
352 3al0_B Aspartyl/glutamyl-tRNA( 20.3 2.8E+02 0.0096 28.7 8.4 90 144-249 303-412 (482)
353 1pve_A HHR23B, UV excision rep 20.0 43 0.0015 25.9 1.7 46 220-267 6-54 (72)
No 1
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.83 E-value=6.2e-20 Score=158.51 Aligned_cols=106 Identities=22% Similarity=0.358 Sum_probs=74.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHH
Q 014748 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELV 224 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~t~~~~~v~~~~l~~L~ 224 (419)
.+.|++|++|||++.+|++||+.|+||++.||+||++|+. |.
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h~~--------------------------------------L~ 50 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHGQ--------------------------------------LC 50 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHHHH--------------------------------------HH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHhch--------------------------------------hc
Confidence 4679999999999999999999999999999999998842 23
Q ss_pred hCCCCHHHHHHHHHhcCCCHHHHHHhhcCCcchhHHhhhhhHHhhhhhccchHHHHHHHHhCCCCHHHHHHHHHHcCCCH
Q 014748 225 SIGFEKELVAEALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGDDI 304 (419)
Q Consensus 225 ~MGF~~~~A~~ALr~t~nnve~Al~~L~npd~~~~L~~~~~~~~~~~~~~~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~ 304 (419)
+.||+...+-.++..+.++-..+ .++...|.+|++|||++++|++||+.|+||+
T Consensus 51 d~~~d~~~~e~~l~~~~~~~~~~--------------------------~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~ 104 (118)
T 4ae4_A 51 EKGFDPLLVEEALEMHQCSEEKM--------------------------MEFLQLMSKFKEMGFELKDIKEVLLLHNNDQ 104 (118)
T ss_dssp HTTCCHHHHHHHHHHCSSCHHHH--------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHTTTCH
T ss_pred ccCCChhhhHHHHHhccCCcccc--------------------------ccCHHHHHHHHHcCCCHHHHHHHHHHcCCCH
Confidence 44555544444444333221110 1234567777777777777777777777777
Q ss_pred HHHHHHhhcC
Q 014748 305 HQIMLQLLGE 314 (419)
Q Consensus 305 e~A~d~Ll~~ 314 (419)
++|++|||+.
T Consensus 105 erAlewL~~~ 114 (118)
T 4ae4_A 105 DNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777754
No 2
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.83 E-value=7.1e-22 Score=200.17 Aligned_cols=164 Identities=19% Similarity=0.193 Sum_probs=124.7
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHhhcCC--CCCCCcCCHHHH
Q 014748 143 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGL--TPLKKAVDIEKI 220 (419)
Q Consensus 143 vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~--t~~~~~v~~~~l 220 (419)
.+++.|++|++|||++.+|++|||+++||+++|++||++|+++......... .+..... .+.+... ..+
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~l 237 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSV-------QESQVSEQPATEAAGE--NPL 237 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCCCC-------CCCCSSCCCCSSCCSC--CTT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccCCc-------cccccccccCcccccc--chH
Confidence 4678999999999999999999999999999999999999987422100000 0000000 0001111 236
Q ss_pred HHHHhC-CCCHHHHHHHHHhcCCCHHHHHHhh--cCCcchhHHhhhhhHHhhh---------------------------
Q 014748 221 KELVSI-GFEKELVAEALRRNENDSQKALDDL--TNPESNSAIQLYIESRKRK--------------------------- 270 (419)
Q Consensus 221 ~~L~~M-GF~~~~A~~ALr~t~nnve~Al~~L--~npd~~~~L~~~~~~~~~~--------------------------- 270 (419)
+.|+.. .| .+.|..+++++.-++.-+++| +||++.+.|+.|++.+-..
T Consensus 238 ~~Lr~~pqf--~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~ 315 (368)
T 1oqy_A 238 EFLRDQPQF--QNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQ 315 (368)
T ss_dssp HHHHHSHHH--HHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTT
T ss_pred HHHhcChHH--HHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccCCc
Confidence 888887 58 669999999999999999999 7999988888875533110
Q ss_pred ---hhcc-chHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 271 ---RCRQ-AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 271 ---~~~~-~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
.+.+ .+.++|++|++|||++..|++||++|+||+++|++|||+|+++
T Consensus 316 ~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~~~d 366 (368)
T 1oqy_A 316 MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFD 366 (368)
T ss_dssp CSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHHCC
T ss_pred cccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhCcCc
Confidence 0223 4899999999999999999999999999999999999999876
No 3
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=164.37 Aligned_cols=105 Identities=20% Similarity=0.332 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHhhcCCCC--CC------
Q 014748 142 QVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTP--LK------ 212 (419)
Q Consensus 142 ~vdee~l~~LmeMGF~~~~ArrALrat~g-dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~t~--~~------ 212 (419)
.||++.|.+|++|||++.+|++||++|+| |++.|++||++|++++....+.. ...+..+. ..
T Consensus 1 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~---------~~~~~s~~~~~~~~l~~~ 71 (126)
T 2lbc_A 1 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLT---------MPGYGGAASAGASVFGAS 71 (126)
T ss_dssp CCCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTC---------CSSCCSSSSSCCCCSTTS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccccccc---------ccccccccccchhhhccc
Confidence 37899999999999999999999999976 89999999999998875432100 00011111 00
Q ss_pred --Cc-CCHHHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHHhh-cCCc
Q 014748 213 --KA-VDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNPE 255 (419)
Q Consensus 213 --~~-v~~~~l~~L~~MGF~~~~A~~ALr~t~nnve~Al~~L-~npd 255 (419)
.+ ++++.|++|++|||++..|++||+.++||+++|++|| +|++
T Consensus 72 ~~~~~~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 72 GLDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp SCCCCCCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred ccccCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 22 7899999999999999999999999999999999998 5544
No 4
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=157.84 Aligned_cols=102 Identities=19% Similarity=0.347 Sum_probs=80.4
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHHhh-c---CCcchhHHhhh-hhHHhh-hh--------hccchHHH
Q 014748 215 VDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDL-T---NPESNSAIQLY-IESRKR-KR--------CRQAADAK 279 (419)
Q Consensus 215 v~~~~l~~L~~MGF~~~~A~~ALr~t~n-nve~Al~~L-~---npd~~~~L~~~-~~~~~~-~~--------~~~~d~~~ 279 (419)
||++.|++|++|||++..|++||+.|+| +++.|++|| . +|++..++... ...... .. ...+++..
T Consensus 2 ~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~~ 81 (126)
T 2lbc_A 2 IDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEI 81 (126)
T ss_dssp CCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHHH
Confidence 5778999999999999999999999977 899999998 3 34442222111 000000 00 22368899
Q ss_pred HHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 014748 280 IEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPG 316 (419)
Q Consensus 280 I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~ 316 (419)
|.+|++|||+++.|+.||++|+||+++|++||++|++
T Consensus 82 v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 82 VAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999987
No 5
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=145.38 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=82.1
Q ss_pred cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHhhcCCCCCCCcCCHH
Q 014748 140 QLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIE 218 (419)
Q Consensus 140 ~l~vdee~l~~LmeMGF~~~~ArrALrat~g-dve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~t~~~~~v~~~ 218 (419)
.+.+|++.|++|++|||++.+|++||++++| +++.|++||++|+++++...+....... ... ........++++
T Consensus 648 ~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~---~~~--s~~~~~~~~~~e 722 (854)
T 3ihp_A 648 APMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSS---GPG--STSAAADPPPED 722 (854)
T ss_dssp -----CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC-------------------CCHH
T ss_pred ccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccc---ccc--ccccccCCCCHH
Confidence 4567889999999999999999999999976 6999999999999998765432110000 000 000001357899
Q ss_pred HHHHHHhCCCCHHHHHHHHHhcCCCHHHHHHhh-cCCc
Q 014748 219 KIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNPE 255 (419)
Q Consensus 219 ~l~~L~~MGF~~~~A~~ALr~t~nnve~Al~~L-~npd 255 (419)
.|.+|.+|||+..+|++||+.++||+++|++|+ +||+
T Consensus 723 ~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d 760 (854)
T 3ihp_A 723 CVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHID 760 (854)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcc
Confidence 999999999999999999999999999999997 6665
No 6
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.34 E-value=4.7e-13 Score=101.68 Aligned_cols=42 Identities=29% Similarity=0.503 Sum_probs=40.4
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 276 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 276 d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
+++.|++|++|||++++|+.||++|+||+|+|+||||+|+++
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 678899999999999999999999999999999999999886
No 7
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.29 E-value=6.3e-13 Score=105.48 Aligned_cols=64 Identities=19% Similarity=0.409 Sum_probs=51.5
Q ss_pred HHHHhh-c---CCcchhHHhhhhhHHhhhhhccchHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 246 KALDDL-T---NPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 246 ~Al~~L-~---npd~~~~L~~~~~~~~~~~~~~~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
.|++|| + +|++..+| .+. ...++++.|.+|++|||++.+|+.||++|+||+++|++|||+|+++
T Consensus 3 ~am~wl~~h~dDpd~d~pl----~~~----~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 3 SGSSGLLSHMDDPDIDAPI----SHQ----TSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp CCCCCCSSCCSCSCSSCCS----CCS----SCSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHcCCCCCccCCC----CCC----CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 578897 3 56654332 210 1246889999999999999999999999999999999999999876
No 8
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.27 E-value=1.9e-12 Score=100.20 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHhchhhhhhh
Q 014748 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKE 189 (419)
Q Consensus 141 l~vdee~l~~LmeMGF~~~~ArrALrat~g-dve~Av~~L~e~~~d~~~~ 189 (419)
-++|++.|++|++|||++.+|++||++|+| |++.|++||++|+++++..
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d 55 (64)
T 2crn_A 6 SGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLD 55 (64)
T ss_dssp CCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccc
Confidence 467889999999999999999999999988 9999999999999987654
No 9
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.27 E-value=1.8e-12 Score=100.36 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=43.7
Q ss_pred hccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHhchhhh
Q 014748 138 FFQLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKR 186 (419)
Q Consensus 138 ~~~l~vdee~l~~LmeMGF~~~~ArrALrat~g-dve~Av~~L~e~~~d~ 186 (419)
|.++ ++++.|++|++|||++.+|++||++|+| |+++|++||++|++++
T Consensus 14 ya~~-~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~ 62 (64)
T 2cpw_A 14 PGTI-KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPS 62 (64)
T ss_dssp SCSS-SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCC
T ss_pred cccc-CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Confidence 3444 7889999999999999999999999998 9999999999998875
No 10
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.25 E-value=3.6e-12 Score=98.59 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHh-CCCHHHHHHHHHhchhhhhhh
Q 014748 141 LQVPDESLSLVMSMGFKEQDAKRALRIC-SQDVGSAIDFLVEEKAKRVKE 189 (419)
Q Consensus 141 l~vdee~l~~LmeMGF~~~~ArrALrat-~gdve~Av~~L~e~~~d~~~~ 189 (419)
..+|++.|++|++|||++.+|++||++| +||+++|++||++|+++++..
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~d 55 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVD 55 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcccc
Confidence 4689999999999999999999999999 689999999999999887543
No 11
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.25 E-value=7.6e-12 Score=96.53 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=42.3
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCc
Q 014748 275 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNPT 320 (419)
Q Consensus 275 ~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~~~~ 320 (419)
++++.|.+|++|||++++|+.||++|+||+++|++|||+|..+...
T Consensus 8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~~~ 53 (63)
T 1wji_A 8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPV 53 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCCCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCccc
Confidence 5788999999999999999999999999999999999999876443
No 12
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.9e-12 Score=100.59 Aligned_cols=50 Identities=10% Similarity=0.229 Sum_probs=45.6
Q ss_pred cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHhchhhhhhh
Q 014748 140 QLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKE 189 (419)
Q Consensus 140 ~l~vdee~l~~LmeMGF~~~~ArrALrat~g-dve~Av~~L~e~~~d~~~~ 189 (419)
...+|++.|++|++|||++.+|++||++|+| |+++|++||++|+++++..
T Consensus 5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d 55 (74)
T 2dag_A 5 SSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFA 55 (74)
T ss_dssp CCSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSS
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccc
Confidence 3468999999999999999999999999997 7999999999999987654
No 13
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.24 E-value=5.3e-12 Score=89.92 Aligned_cols=41 Identities=29% Similarity=0.539 Sum_probs=38.3
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhch
Q 014748 143 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 143 vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~ 183 (419)
+++++|++|++|||++.+|++||++|+||+++|++||++|.
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 46789999999999999999999999999999999999873
No 14
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.2e-12 Score=97.81 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhhhhhh
Q 014748 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKE 189 (419)
Q Consensus 142 ~vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d~~~~ 189 (419)
.++++.|++|++|||++.+|++||++|+||+++|++||++|+++++..
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~d~d 54 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAE 54 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSCCSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCcccc
Confidence 578999999999999999999999999999999999999999886543
No 15
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.4e-11 Score=97.96 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=42.0
Q ss_pred cchHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHhhcCCCCCC
Q 014748 274 QAADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGSNP 319 (419)
Q Consensus 274 ~~d~~~I~~L~~MGF~~~~A~~AL~~~~n-N~e~A~d~Ll~~~~~~~ 319 (419)
.++++.|.+|++|||++..|+.||++|+| |+++|++|||+|++++.
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 7 GLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp SSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 36889999999999999999999999997 79999999999988733
No 16
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.1e-12 Score=101.13 Aligned_cols=48 Identities=27% Similarity=0.490 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhhhhhh
Q 014748 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKE 189 (419)
Q Consensus 142 ~vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d~~~~ 189 (419)
.+|++.|++|++|||++.+|++||++|+||+++|++||++|+++++..
T Consensus 27 ~~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d~d 74 (83)
T 2dai_A 27 RVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTID 74 (83)
T ss_dssp SCCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCSTTC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcccc
Confidence 479999999999999999999999999999999999999999887654
No 17
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.20 E-value=1.5e-11 Score=87.50 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=38.4
Q ss_pred cchHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcC
Q 014748 274 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 314 (419)
Q Consensus 274 ~~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~ 314 (419)
+++++.|.+|++|||+++.|+.||++|+||+++|++|||+|
T Consensus 2 ~p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 2 TPKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp CHHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 35678999999999999999999999999999999999986
No 18
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.19 E-value=8.2e-12 Score=91.64 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=38.5
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchh
Q 014748 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (419)
Q Consensus 144 dee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~ 184 (419)
++++|++|++|||++.+|++||++|+||+++|++||+++++
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~gip 48 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIP 48 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHCCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999999999865
No 19
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.19 E-value=7.3e-12 Score=91.23 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=41.0
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 014748 275 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSN 318 (419)
Q Consensus 275 ~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~~ 318 (419)
.+.++|.+|++|||++.+|++||.+|++|+++|++|||+|++++
T Consensus 3 ~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~ 46 (47)
T 1dv0_A 3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDD 46 (47)
T ss_dssp CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCC
Confidence 36789999999999999999999999999999999999998763
No 20
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.18 E-value=1.4e-11 Score=93.60 Aligned_cols=41 Identities=17% Similarity=0.398 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhh
Q 014748 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAK 185 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d 185 (419)
++.|.+|++|||++.+|++||++|+||+|+|++|||+|++.
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 57899999999999999999999999999999999999764
No 21
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.16 E-value=2.2e-11 Score=96.55 Aligned_cols=45 Identities=24% Similarity=0.498 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhhh
Q 014748 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR 186 (419)
Q Consensus 142 ~vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d~ 186 (419)
.+++++|++|++|||++.+|++||++|+||+++|++||++|.+++
T Consensus 27 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 27 DIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp SSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 589999999999999999999999999999999999999998763
No 22
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=135.66 Aligned_cols=104 Identities=19% Similarity=0.308 Sum_probs=79.9
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHHhh----cCCcchhHHhhhhhH-Hhhh--hhccchHHHHHHHHhC
Q 014748 215 VDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDL----TNPESNSAIQLYIES-RKRK--RCRQAADAKIEQLVAM 286 (419)
Q Consensus 215 v~~~~l~~L~~MGF~~~~A~~ALr~t~n-nve~Al~~L----~npd~~~~L~~~~~~-~~~~--~~~~~d~~~I~~L~~M 286 (419)
++++.|++|++|||++..+++||..++| +++.|++|| .+|++.+++..+-.. ..+. ....++++.|.+|.+|
T Consensus 651 ~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~m 730 (854)
T 3ihp_A 651 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSM 730 (854)
T ss_dssp --CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTT
T ss_pred cCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHc
Confidence 4667999999999999999999999977 699999998 356654443221000 0011 1124688999999999
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 014748 287 GFERPRVIEACRAGGDDIHQIMLQLLGEPGSN 318 (419)
Q Consensus 287 GF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~~ 318 (419)
||+..+|++||+.++||+++|++|+|+|+++.
T Consensus 731 Gf~~~~a~~aL~~t~~~~eraidwlfs~~d~~ 762 (854)
T 3ihp_A 731 GFSRDQALKALRATNNSLERAVDWIFSHIDDL 762 (854)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcCcHHHHHHhhhcCcccc
Confidence 99999999999999999999999999998764
No 23
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.15 E-value=3.6e-11 Score=92.73 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhhh
Q 014748 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR 186 (419)
Q Consensus 142 ~vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d~ 186 (419)
.+++++|++|++|||++.+|++||++|+||+++|++||++|..+.
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 478999999999999999999999999999999999999997654
No 24
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.6e-11 Score=88.04 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhch
Q 014748 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 141 l~vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~ 183 (419)
..++++.|.+|++|||++.+|++||++|+ |+++|++||++|+
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 6 SGVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp CSSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 46899999999999999999999999995 9999999999884
No 25
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.13 E-value=5.3e-11 Score=96.46 Aligned_cols=47 Identities=30% Similarity=0.366 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 014748 273 RQAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNP 319 (419)
Q Consensus 273 ~~~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~~~ 319 (419)
..++++.|.+|++|||++.+|+.||++|+||+++|++|||+|++..+
T Consensus 26 ~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip 72 (83)
T 1veg_A 26 ASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGSLP 72 (83)
T ss_dssp CCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCc
Confidence 45688999999999999999999999999999999999999988643
No 26
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.12 E-value=4.4e-11 Score=97.32 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=45.8
Q ss_pred cCCCCHHHHHHHHhCCCCHHHHHHHHHHhC-CCHHHHHHHHHhchhhhhhh
Q 014748 140 QLQVPDESLSLVMSMGFKEQDAKRALRICS-QDVGSAIDFLVEEKAKRVKE 189 (419)
Q Consensus 140 ~l~vdee~l~~LmeMGF~~~~ArrALrat~-gdve~Av~~L~e~~~d~~~~ 189 (419)
...++++.|++|++|||++.+|++||++++ +|+++|++||++|+++++..
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d 75 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDID 75 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTT
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccc
Confidence 567899999999999999999999999996 69999999999999987654
No 27
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.10 E-value=5.3e-11 Score=92.07 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=41.1
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHhhcCCCCC
Q 014748 275 AADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGSN 318 (419)
Q Consensus 275 ~d~~~I~~L~~MGF~~~~A~~AL~~~~n-N~e~A~d~Ll~~~~~~ 318 (419)
++++.|.+|++|||++.+|+.||++|+| |+++|++|||+|++++
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~ 62 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPS 62 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Confidence 5778899999999999999999999998 9999999999998773
No 28
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.08 E-value=7e-11 Score=91.42 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=41.4
Q ss_pred cchHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHhhcCCCCC
Q 014748 274 QAADAKIEQLVAMGFERPRVIEACRAGGD-DIHQIMLQLLGEPGSN 318 (419)
Q Consensus 274 ~~d~~~I~~L~~MGF~~~~A~~AL~~~~n-N~e~A~d~Ll~~~~~~ 318 (419)
.+++..|.+|++|||++..|++||++|+| |++.|++|||+|++++
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 7 GSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 45778899999999999999999999988 9999999999998863
No 29
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=84.71 Aligned_cols=41 Identities=29% Similarity=0.445 Sum_probs=38.2
Q ss_pred cchHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 014748 274 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEP 315 (419)
Q Consensus 274 ~~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~ 315 (419)
.++++.|.+|++|||+++.|+.||++|+ |+++|++||++|+
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 7 GVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp SSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 4688999999999999999999999996 8999999999985
No 30
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=9.5e-11 Score=90.20 Aligned_cols=44 Identities=18% Similarity=0.377 Sum_probs=41.3
Q ss_pred cchHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 274 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 274 ~~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
.++++.|.+|++|||+++.|+.||++|+||+++|++|||+|+++
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 36888999999999999999999999999999999999999766
No 31
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.04 E-value=1.5e-10 Score=84.91 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=37.7
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcC
Q 014748 275 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 314 (419)
Q Consensus 275 ~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~ 314 (419)
..++.|.+|++|||++++|+.||++|+||+++|++||+++
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4677899999999999999999999999999999999986
No 32
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.04 E-value=1.6e-10 Score=89.37 Aligned_cols=45 Identities=27% Similarity=0.306 Sum_probs=41.3
Q ss_pred cchHHHHHHHHhCCCCHHHHHHHHHHc-CCCHHHHHHHhhcCCCCC
Q 014748 274 QAADAKIEQLVAMGFERPRVIEACRAG-GDDIHQIMLQLLGEPGSN 318 (419)
Q Consensus 274 ~~d~~~I~~L~~MGF~~~~A~~AL~~~-~nN~e~A~d~Ll~~~~~~ 318 (419)
.++++.|.+|++|||++..|+.||++| ++|+++|++|||+|++++
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 457889999999999999999999999 689999999999998763
No 33
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.04 E-value=2e-10 Score=93.10 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhh
Q 014748 140 QLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAK 185 (419)
Q Consensus 140 ~l~vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d 185 (419)
...+++++|++|++|||++.+|++||++|+||+++|++||++|..+
T Consensus 25 ~~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 25 QASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp SCCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 3456899999999999999999999999999999999999999764
No 34
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.01 E-value=3.4e-10 Score=89.71 Aligned_cols=44 Identities=36% Similarity=0.579 Sum_probs=40.9
Q ss_pred cchHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 274 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 274 ~~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
.+.++.|.+|++|||++++|+.||++|+||+++|++|||+|.++
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 34788999999999999999999999999999999999998765
No 35
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.6e-10 Score=91.70 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=41.9
Q ss_pred cchHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 014748 274 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSN 318 (419)
Q Consensus 274 ~~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~~ 318 (419)
.++++.|.+|++|||++..|+.||++|+||+++|++|||+|++++
T Consensus 27 ~~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 27 RVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp SCCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 368899999999999999999999999999999999999998763
No 36
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.99 E-value=4.1e-10 Score=89.23 Aligned_cols=43 Identities=21% Similarity=0.461 Sum_probs=39.7
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhh
Q 014748 143 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAK 185 (419)
Q Consensus 143 vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d 185 (419)
..+++|++|++|||++.+|++||+.|+||+++|++||++|.+.
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 4578999999999999999999999999999999999998643
No 37
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.99 E-value=4.5e-10 Score=83.64 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHhch
Q 014748 145 DESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 145 ee~l~~LmeMGF-~~~~ArrALrat~gdve~Av~~L~e~~ 183 (419)
+++|++|++||| ++..|++||++|+||+++|++||++|.
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 467999999999 999999999999999999999999885
No 38
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.98 E-value=5.2e-10 Score=83.01 Aligned_cols=40 Identities=40% Similarity=0.591 Sum_probs=37.4
Q ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 014748 276 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEP 315 (419)
Q Consensus 276 d~~~I~~L~~MGF-~~~~A~~AL~~~~nN~e~A~d~Ll~~~ 315 (419)
-+..|.+|++||| +++.++.||++|+||+++|++|||+|+
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 4568999999999 999999999999999999999999875
No 39
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.98 E-value=7e-11 Score=85.99 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=40.5
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhhh
Q 014748 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR 186 (419)
Q Consensus 144 dee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d~ 186 (419)
++++|++|++|||++..|++||.+|++|++.|++||++|++++
T Consensus 4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~ 46 (47)
T 1dv0_A 4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDD 46 (47)
T ss_dssp CHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCC
Confidence 5789999999999999999999999999999999999998764
No 40
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.97 E-value=2.3e-10 Score=93.25 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=42.1
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhhhh
Q 014748 143 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRV 187 (419)
Q Consensus 143 vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d~~ 187 (419)
+|+++|.+|++|||++.+|++||+.+++|+++|++||++|+.+.+
T Consensus 20 ~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 20 IMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 468899999999999999999999999999999999999998864
No 41
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.96 E-value=5.5e-10 Score=77.75 Aligned_cols=36 Identities=31% Similarity=0.548 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 014748 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~ 180 (419)
++.|++|++|||++.+|++||++|+||+++|++||+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 568999999999999999999999999999999984
No 42
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.95 E-value=6.5e-10 Score=82.48 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHhch
Q 014748 145 DESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 145 ee~l~~LmeMGF-~~~~ArrALrat~gdve~Av~~L~e~~ 183 (419)
+++|.+|++||| ++..|++||++|+||+++|++||++|+
T Consensus 13 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 578999999999 999999999999999999999998873
No 43
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.95 E-value=8.3e-10 Score=82.21 Aligned_cols=39 Identities=38% Similarity=0.600 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 014748 277 DAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEP 315 (419)
Q Consensus 277 ~~~I~~L~~MGF-~~~~A~~AL~~~~nN~e~A~d~Ll~~~ 315 (419)
...|.+|++||| +++.++.||++|+||+++|++|||+|+
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 457999999999 999999999999999999999999985
No 44
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.92 E-value=1.2e-09 Score=88.86 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=41.0
Q ss_pred cchHHHHHHHHhCCCCHHHHHHHHHHcC-CCHHHHHHHhhcCCCC
Q 014748 274 QAADAKIEQLVAMGFERPRVIEACRAGG-DDIHQIMLQLLGEPGS 317 (419)
Q Consensus 274 ~~d~~~I~~L~~MGF~~~~A~~AL~~~~-nN~e~A~d~Ll~~~~~ 317 (419)
.++++.|.+|++|||++.+|++||+.++ +|+++|++|||+|+++
T Consensus 27 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 27 VANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4689999999999999999999999996 6999999999999886
No 45
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.90 E-value=1.7e-09 Score=75.21 Aligned_cols=37 Identities=35% Similarity=0.465 Sum_probs=34.8
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhh
Q 014748 276 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLL 312 (419)
Q Consensus 276 d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll 312 (419)
.++.|.+|++|||+++.|+.||+.|+||+++|++||+
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4568999999999999999999999999999999996
No 46
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.88 E-value=1.5e-09 Score=88.42 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=41.6
Q ss_pred cchHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 274 QAADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 274 ~~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
+++++.|.+|++|||++++|+.||+.+++|+++|++|||+|+++
T Consensus 19 ~~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 19 WIMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 45788999999999999999999999999999999999999887
No 47
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.88 E-value=2.1e-09 Score=77.86 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 145 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 145 ee~l~~LmeMGF~-~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
++.|++|++|||+ +..+++||++++||+++|++||++|
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5789999999995 6678999999999999999999875
No 48
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.86 E-value=6.3e-09 Score=94.82 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCCHHHHHHhh--cCCcchhHHhhhhhHHh--------h-------------------------------
Q 014748 231 ELVAEALRRNENDSQKALDDL--TNPESNSAIQLYIESRK--------R------------------------------- 269 (419)
Q Consensus 231 ~~A~~ALr~t~nnve~Al~~L--~npd~~~~L~~~~~~~~--------~------------------------------- 269 (419)
.+.|..+++++.-++.-++.| +||.+.+.|+.|+..+. .
T Consensus 36 ~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep~~~~~~~m~~~~~~~~~g~~~~~~~~~g~~~~~~ 115 (171)
T 2qsf_X 36 LSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQ 115 (171)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHCCC--------------------------------
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCcccchhhhhcccccccccccccccccccccccccC
Confidence 458899999999999999988 79998877766643211 0
Q ss_pred -------hhhcc-chHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 014748 270 -------KRCRQ-AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPG 316 (419)
Q Consensus 270 -------~~~~~-~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~ 316 (419)
..+.+ .+.++|++|++|||++..|++||.+|++|++.|++|||+++.
T Consensus 116 ~~~~~~~~i~~tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~ 170 (171)
T 2qsf_X 116 GEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHA 170 (171)
T ss_dssp -----EECCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC--
T ss_pred CCCCCcccCCCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 01122 377899999999999999999999999999999999998764
No 49
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.86 E-value=3e-09 Score=77.04 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHhhcC
Q 014748 277 DAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGE 314 (419)
Q Consensus 277 ~~~I~~L~~MGF-~~~~A~~AL~~~~nN~e~A~d~Ll~~ 314 (419)
+..|.+|++||| +++.++.||++++||+++|++|||++
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 467999999999 57788999999999999999999975
No 50
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.80 E-value=6.3e-08 Score=83.39 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=32.3
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHHhh
Q 014748 216 DIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL 251 (419)
Q Consensus 216 ~~~~l~~L~~MGF~~~~A~~ALr~t~nnve~Al~~L 251 (419)
+++.|++|++|||++.+|++||+.|+||+++|++||
T Consensus 76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL 111 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDL 111 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345689999999999999999999999999999997
No 51
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.80 E-value=5.5e-09 Score=82.94 Aligned_cols=42 Identities=36% Similarity=0.559 Sum_probs=38.1
Q ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 276 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 276 d~~~I~~L~~MGF-~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
-+..|.+|++||| +++.++.||++++||+++|++|||+++++
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 3568999999999 68999999999999999999999998665
No 52
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.79 E-value=4.1e-09 Score=78.85 Aligned_cols=41 Identities=29% Similarity=0.438 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCH-HHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 277 DAKIEQLVAMGFER-PRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 277 ~~~I~~L~~MGF~~-~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
+..|.+|++|||+. +.++.||++|+||+++|++|||++++.
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 56799999999955 557999999999999999999998654
No 53
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.78 E-value=5.2e-09 Score=78.26 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCHH-HHHHHHHHhCCCHHHHHHHHHhchhh
Q 014748 145 DESLSLVMSMGFKEQ-DAKRALRICSQDVGSAIDFLVEEKAK 185 (419)
Q Consensus 145 ee~l~~LmeMGF~~~-~ArrALrat~gdve~Av~~L~e~~~d 185 (419)
++.|++|++|||+.. .+++||++++||+++|++||+++.+.
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 678999999999665 56999999999999999999998643
No 54
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.78 E-value=4.5e-09 Score=83.42 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHhchhh
Q 014748 145 DESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEKAK 185 (419)
Q Consensus 145 ee~l~~LmeMGF-~~~~ArrALrat~gdve~Av~~L~e~~~d 185 (419)
++.|++|++||| ++..+++||++++||+++|++||+++++.
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 578999999999 57888999999999999999999999764
No 55
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.77 E-value=6.2e-09 Score=78.96 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHhch
Q 014748 145 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 145 ee~l~~LmeMGF~-~~~ArrALrat~gdve~Av~~L~e~~ 183 (419)
++.|++|++|||+ +..+++||++++||+++|++||++|.
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 5689999999995 77889999999999999999999874
No 56
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.77 E-value=5.4e-09 Score=79.27 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 014748 277 DAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEP 315 (419)
Q Consensus 277 ~~~I~~L~~MGF-~~~~A~~AL~~~~nN~e~A~d~Ll~~~ 315 (419)
+..|.+|++||| +++.++.||++++||+++|++|||+++
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 457999999999 588889999999999999999999875
No 57
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.76 E-value=7.1e-09 Score=80.70 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCHH-HHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 014748 277 DAKIEQLVAMGFERP-RVIEACRAGGDDIHQIMLQLLGEPGSNP 319 (419)
Q Consensus 277 ~~~I~~L~~MGF~~~-~A~~AL~~~~nN~e~A~d~Ll~~~~~~~ 319 (419)
...|.+|++|||... .+++||++|+||+++|++|||+++++.+
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCccC
Confidence 457999999999555 5599999999999999999999987643
No 58
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.74 E-value=6.4e-09 Score=80.98 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCCHHHH-HHHHHHhCCCHHHHHHHHHhchhh
Q 014748 145 DESLSLVMSMGFKEQDA-KRALRICSQDVGSAIDFLVEEKAK 185 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~A-rrALrat~gdve~Av~~L~e~~~d 185 (419)
...|++|.+|||...++ ++||++|+|||++||+||+++.++
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 35899999999966655 999999999999999999999776
No 59
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.65 E-value=2.9e-08 Score=73.05 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhc
Q 014748 277 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLG 313 (419)
Q Consensus 277 ~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~ 313 (419)
++.|.+|++|||+++.|++||+.++||++.|+++|+.
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3789999999999999999999999999999999974
No 60
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.63 E-value=4.6e-08 Score=71.94 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 014748 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 181 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e 181 (419)
++.|++||+|||++.+|++||+.++||++-|.++|.+
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4899999999999999999999999999999999865
No 61
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.56 E-value=6.2e-08 Score=71.59 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=36.5
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcC
Q 014748 275 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 314 (419)
Q Consensus 275 ~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~ 314 (419)
+.+..|.+|++|||+++.|++||..++||++.|++.|+..
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3456799999999999999999999999999999999865
No 62
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.52 E-value=9.7e-08 Score=80.93 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=37.3
Q ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 014748 276 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEPG 316 (419)
Q Consensus 276 d~~~I~~L~~MGF-~~~~A~~AL~~~~nN~e~A~d~Ll~~~~ 316 (419)
-+..|.+|++||| +++.++.||++++||+++|++|||++++
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 3678999999999 5689999999999999999999998864
No 63
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.47 E-value=1.5e-07 Score=69.80 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
++.|++||+|||+++++++||..++|||+.|.++|.+-
T Consensus 8 e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 8 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 57899999999999999999999999999999999653
No 64
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.45 E-value=1.5e-07 Score=69.81 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=37.1
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcC
Q 014748 275 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 314 (419)
Q Consensus 275 ~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~ 314 (419)
+.+..|.+|++|||+++.|++||..++||++.|.+.|+.-
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4667899999999999999999999999999999999864
No 65
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.44 E-value=2.6e-07 Score=68.29 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=35.8
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 144 dee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
-+..|.+||+|||++++|++||..++||++.|.++|.+-
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 457799999999999999999999999999999999653
No 66
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.35 E-value=4.2e-07 Score=77.05 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHhch
Q 014748 145 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 145 ee~l~~LmeMGF~-~~~ArrALrat~gdve~Av~~L~e~~ 183 (419)
++.|++|.+|||+ +..+++||++++||+++||+||+++.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 6899999999994 58999999999999999999999874
No 67
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.28 E-value=6.9e-07 Score=66.15 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHhCCCCHHHHHHHHHhcCC-CHHHHHHhh
Q 014748 214 AVDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDL 251 (419)
Q Consensus 214 ~v~~~~l~~L~~MGF~~~~A~~ALr~t~n-nve~Al~~L 251 (419)
.++...+++|++|||+++.|.+||++|+| .++.|++||
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL 45 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYI 45 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHH
Confidence 67889999999999999999999999998 799999998
No 68
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.27 E-value=1e-06 Score=63.01 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcC
Q 014748 277 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 314 (419)
Q Consensus 277 ~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~ 314 (419)
+..|.+|++|||+++.|++||-.++||++.|++.|+..
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 45799999999999999999999999999999999753
No 69
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.26 E-value=1.3e-06 Score=62.49 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 014748 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 181 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e 181 (419)
+..|..||+|||+.+++++||-.++||++.|.+.|.+
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 5789999999999999999999999999999998865
No 70
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.22 E-value=1.1e-06 Score=64.99 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHH
Q 014748 142 QVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLV 180 (419)
Q Consensus 142 ~vdee~l~~LmeMGF~~~~ArrALrat~g-dve~Av~~L~ 180 (419)
.|+...+++|++|||+...|.+||+.|+| .++.|++||.
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 57888999999999999999999999988 6999999994
No 71
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.22 E-value=1.1e-06 Score=89.04 Aligned_cols=46 Identities=28% Similarity=0.474 Sum_probs=41.8
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCc
Q 014748 275 AADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGSNPT 320 (419)
Q Consensus 275 ~d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~~~~ 320 (419)
..++.|.+|++|||++++|+.||++++||.++|++|||++..+...
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~ 212 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPE 212 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSS
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccc
Confidence 4788999999999999999999999999999999999999776433
No 72
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.98 E-value=5.7e-06 Score=69.46 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=38.7
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHhchhh
Q 014748 145 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEKAK 185 (419)
Q Consensus 145 ee~l~~LmeM-GF~~~~ArrALrat~gdve~Av~~L~e~~~d 185 (419)
++.|..|++| ||++.+|+.||..|+||+++|+++|+++..+
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 5789999999 9999999999999999999999999999853
No 73
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=97.87 E-value=1.2e-05 Score=74.78 Aligned_cols=39 Identities=38% Similarity=0.447 Sum_probs=36.9
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcC
Q 014748 276 ADAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 314 (419)
Q Consensus 276 d~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~ 314 (419)
-++.|.+|++|||++++|+.||..+++|+++|+++||+|
T Consensus 163 ~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 163 YTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 378999999999999999999999999999999999975
No 74
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.83 E-value=1.3e-05 Score=59.71 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=37.4
Q ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 276 ADAKIEQLVAMGF-ERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 276 d~~~I~~L~~MGF-~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
....+.+|.+||| +++.-+.||+.+++|+++|++.|+.....
T Consensus 9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 9 TAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 4557899999999 99999999999999999999999976544
No 75
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=97.78 E-value=2.2e-05 Score=72.91 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
+++|++|++|||++..|+.||+.+++|+++|++||+++
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 58999999999999999999999999999999999874
No 76
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.69 E-value=2.5e-05 Score=58.20 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=36.1
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHhch
Q 014748 144 PDESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 144 dee~l~~LmeMGF-~~~~ArrALrat~gdve~Av~~L~e~~ 183 (419)
+...|.+|.+||| ....-++||+.++||+++||+.|+...
T Consensus 9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 9 TAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 3568999999999 999999999999999999999997653
No 77
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.67 E-value=2.7e-05 Score=70.89 Aligned_cols=39 Identities=18% Similarity=0.395 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchh
Q 014748 146 ESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (419)
Q Consensus 146 e~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~ 184 (419)
++|.+|++|||++..|++|+.+|++|.+.|.+||+++..
T Consensus 132 eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~ 170 (171)
T 2qsf_X 132 QAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHA 170 (171)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 799999999999999999999999999999999998754
No 78
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.64 E-value=5.1e-05 Score=63.68 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=39.2
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCccc
Q 014748 277 DAKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPGSNPTAA 322 (419)
Q Consensus 277 ~~~I~~L~~M-GF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~~~~~~ 322 (419)
++.|..|++| ||+++.|+.||..|+||+++|+++||+... +...|
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~-~~~~W 85 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP-DTHSW 85 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS-SCSSC
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC-cCCce
Confidence 4578999999 999999999999999999999999998764 34445
No 79
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=97.37 E-value=0.0011 Score=59.37 Aligned_cols=110 Identities=16% Similarity=0.238 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHhchhhhh-hhhhhhHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHHhCC-CCHHH
Q 014748 155 GFKEQDAKRALRICSQDVGSAIDFLVEEKAKRV-KEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIG-FEKEL 232 (419)
Q Consensus 155 GF~~~~ArrALrat~gdve~Av~~L~e~~~d~~-~~~~~~~~~~~~~~~~~~~g~t~~~~~v~~~~l~~L~~MG-F~~~~ 232 (419)
||+..++--||..|++.+ =++||.++-+... .+.. ....+|. ..| |+...
T Consensus 28 GfspEEV~aAl~~~g~~~--P~~WLk~ewp~ll~~V~~----------la~~~~~----------------~~g~~s~~E 79 (162)
T 4dbg_B 28 GACPEEIFSALQYSGTEV--PLQWLRSELPYVLEMVAE----------LAGQQDP----------------GLGAFSCQE 79 (162)
T ss_dssp CCCHHHHHHHHHHHTCCC--CHHHHHHHSCSHHHHHHH----------HHHHHCG----------------GGCCCCHHH
T ss_pred CCCHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHH----------HHHHhCC----------------CCCcccHHH
Confidence 999999999997665322 5779977755532 1110 1111110 122 77788
Q ss_pred HHHHHHhcCCCHHHHHHhhcCCcchhHHhhhhhHHhhhhhccchHHHHHHHHhCC-CCHHHHHHHHHHcCCCHHHHHHHh
Q 014748 233 VAEALRRNENDSQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMG-FERPRVIEACRAGGDDIHQIMLQL 311 (419)
Q Consensus 233 A~~ALr~t~nnve~Al~~L~npd~~~~L~~~~~~~~~~~~~~~d~~~I~~L~~MG-F~~~~A~~AL~~~~nN~e~A~d~L 311 (419)
|++||+...||++.|+... +.. -...+..|++.| |+++.+..||...+||++.|+--|
T Consensus 80 Ar~Aw~~~~Gd~~~Av~~c--------i~~-------------R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 80 ARRAWLDRHGNLDEAVEEC--------VRT-------------RRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHTTTCHHHHHHHH--------HHH-------------HHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHccCChHHHHHHH--------HHH-------------HHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999999742 111 224578899999 788899999999999999999766
Q ss_pred hc
Q 014748 312 LG 313 (419)
Q Consensus 312 l~ 313 (419)
-.
T Consensus 139 qr 140 (162)
T 4dbg_B 139 QR 140 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 80
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=97.31 E-value=0.00051 Score=61.56 Aligned_cols=68 Identities=28% Similarity=0.340 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHHhCC-CCHHHH
Q 014748 155 GFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIG-FEKELV 233 (419)
Q Consensus 155 GF~~~~ArrALrat~gdve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~t~~~~~v~~~~l~~L~~MG-F~~~~A 233 (419)
.++..+||+||+..+||+++|+......+ ...+..|++.| |++.++
T Consensus 74 ~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R---------------------------------~~K~~eL~s~G~~~~~~~ 120 (162)
T 4dbg_B 74 AFSCQEARRAWLDRHGNLDEAVEECVRTR---------------------------------RRKVQELQSLGFGPEEGS 120 (162)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHH---------------------------------HHHHHHHHHTTCCGGGTH
T ss_pred cccHHHHHHHHHHccCChHHHHHHHHHHH---------------------------------HHHHHHHHhcCCchHHHH
Confidence 37889999999999999999999763221 12377999999 899999
Q ss_pred HHHHHhcCCCHHHHHHhhcCCc
Q 014748 234 AEALRRNENDSQKALDDLTNPE 255 (419)
Q Consensus 234 ~~ALr~t~nnve~Al~~L~npd 255 (419)
.+||+++.||++.|+-.|+-|-
T Consensus 121 ~~aL~~~~Gdv~~Al~eLqr~l 142 (162)
T 4dbg_B 121 LQALFQHGGDVSRALTELQRQR 142 (162)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999999998775543
No 81
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.07 E-value=0.00051 Score=66.17 Aligned_cols=38 Identities=37% Similarity=0.434 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcC
Q 014748 277 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 314 (419)
Q Consensus 277 ~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~ 314 (419)
.+.|.+|++|||+++.|+.||..+++|+++|+++||++
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~~ 253 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLSN 253 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 67999999999999999999999999999999999974
No 82
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.03 E-value=0.014 Score=46.94 Aligned_cols=147 Identities=12% Similarity=-0.013 Sum_probs=100.1
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
.+..+...|..++..++|++|+.++..|=+.+...+.. ...+.....+.|||+.+++ .+.|...+.+|-+.+
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-----AAERIAYSNLGNAYIFLGE---FETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc-----hHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 46678899999999999999999999998877653221 2335667789999998764 678888888888777
Q ss_pred HHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHH
Q 014748 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAK 162 (419)
Q Consensus 83 ~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Ar 162 (419)
.+. + ++ ....+.+..-|.+.+..|++++|..++..+-.......-.......+. .
T Consensus 80 ~~~-~-~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~ 134 (164)
T 3ro3_A 80 RQL-K-DR--------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW---------S 134 (164)
T ss_dssp HHT-T-CH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------H
T ss_pred HHh-C-Cc--------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHH---------H
Confidence 654 2 21 122344556688888999999999999888665544432221111111 1
Q ss_pred HH-HHHhCCCHHHHHHHHHhc
Q 014748 163 RA-LRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 163 rA-Lrat~gdve~Av~~L~e~ 182 (419)
.| +....|+.+.|+.++..-
T Consensus 135 la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 22 222357889998887443
No 83
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.02 E-value=0.0074 Score=49.86 Aligned_cols=117 Identities=13% Similarity=0.015 Sum_probs=82.2
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
.|+.+.+.|..+.++|+|++|+.++-.|=+. --+.+..-..+..||+.+++ ...|..-+.+|-+..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----------~p~~~~~~~nlg~~~~~~~~---~~~A~~~~~~al~~~ 72 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----------DPSNITFYNNKAAVYFEEKK---FAECVQFCEKAVEVG 72 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHhHHHHHHHhhh---HHHHHHHHHHHHHhC
Confidence 3677889999999999999999999877443 12345667789999999875 567777666666554
Q ss_pred HHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHH
Q 014748 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVM 152 (419)
Q Consensus 83 ~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~Lm 152 (419)
..... ....+ -+.+.-.|.+.+..|++++|.+.+.++-.. ..|++.+..|.
T Consensus 73 ~~~~~-~~~~~--------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~----~~~~~~~~~l~ 123 (127)
T 4gcn_A 73 RETRA-DYKLI--------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE----FRDPELVKKVK 123 (127)
T ss_dssp HHTTC-CHHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCCHHHHHHHH
T ss_pred cccch-hhHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcCHHHHHHHH
Confidence 44333 33222 234444677788999999999999887543 34666666554
No 84
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.91 E-value=0.034 Score=47.42 Aligned_cols=149 Identities=9% Similarity=-0.057 Sum_probs=101.9
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
.+..++..|...+..++|++|+.++..|=+.|...+.. ...+.....+.|||+.+++ .+.|...+.+|-+.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~ 96 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH-----TAEHRALHQVGMVERMAGN---WDAARRCFLEERELL 96 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999888776532 2345667778999998765 788999999998888
Q ss_pred HHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHH
Q 014748 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAK 162 (419)
Q Consensus 83 ~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Ar 162 (419)
+ .+|.++.. ....+..-|.+.+..|++++|..++..+-.......-.......+. .
T Consensus 97 ~-~~~~~~~~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~ 152 (203)
T 3gw4_A 97 A-SLPEDPLA--------------ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR---------G 152 (203)
T ss_dssp H-HSCCCHHH--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------H
T ss_pred H-HcCccHHH--------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHH---------H
Confidence 7 55534311 1233445577788899999999999888654433221111111111 1
Q ss_pred HH-HHHhCCCHHHHHHHHHhch
Q 014748 163 RA-LRICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 163 rA-Lrat~gdve~Av~~L~e~~ 183 (419)
.| +....|+.+.|..++..-.
T Consensus 153 la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHH
Confidence 22 2334688999998875443
No 85
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.85 E-value=0.02 Score=51.79 Aligned_cols=152 Identities=14% Similarity=0.005 Sum_probs=105.0
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..+...|..+.+.++|++|+.++..|=+.+.... -..-.+.+.....+.+||+.++ ...+|...+.++-+.++
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTL---GKDHPAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIRE 142 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHHHHH
Confidence 44577789999999999999999988877664320 0112345666778899998776 57899999999999999
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCC--CCHHHHHHHHhCCCCHHHH
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQ--VPDESLSLVMSMGFKEQDA 161 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~--vdee~l~~LmeMGF~~~~A 161 (419)
+.+|.+.... ...+..-|.+.+..|++++|..++..+-..+.... -++.....+..+|
T Consensus 143 ~~~~~~~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la------ 202 (311)
T 3nf1_A 143 KVLGKDHPDV--------------AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA------ 202 (311)
T ss_dssp HHHCTTCHHH--------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHH------
T ss_pred HhcCCCChHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------
Confidence 9888654332 33444557778899999999999999877654431 1333333333221
Q ss_pred HHHHHHhCCCHHHHHHHHHhch
Q 014748 162 KRALRICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 162 rrALrat~gdve~Av~~L~e~~ 183 (419)
-+....|+.+.|+.++..-.
T Consensus 203 --~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 203 --SCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp --HHHHHHTCHHHHHHHHHHHH
T ss_pred --HHHHHcCCHHHHHHHHHHHH
Confidence 12234588999999885443
No 86
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.84 E-value=0.018 Score=46.31 Aligned_cols=114 Identities=13% Similarity=-0.078 Sum_probs=85.2
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
++..++..|...+..++|++|+.++..|=+.+...+.. ...+.....+.|||+.+++ .+.|...+.++-+.+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-----AVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc-----HHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHH
Confidence 35678889999999999999999999998888766432 2345667788999998765 678888888888776
Q ss_pred HHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhcc
Q 014748 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (419)
Q Consensus 83 ~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~ 140 (419)
++. + +. ....+.+..-|.+.+..|++++|...+..+-+...+
T Consensus 120 ~~~-~-~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 120 QEL-K-DR--------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHT-T-CH--------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHc-c-ch--------------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 553 2 11 122344455677788899999999999888665543
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.84 E-value=0.019 Score=50.94 Aligned_cols=151 Identities=13% Similarity=-0.032 Sum_probs=104.1
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..++..|......++|++|+.++..|=+.+..... ..-.+.+.....+.+||+.+++ .+.|...+.+|-+.++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG---KDHPAVAATLNNLAVLYGKRGK---YKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHH
Confidence 456788999999999999999999988776543200 1112345567778999988764 7899999999999999
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCC--CHHHHHHHHhCCCCHHHH
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQV--PDESLSLVMSMGFKEQDA 161 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~v--dee~l~~LmeMGF~~~~A 161 (419)
+.+|.+... ....+..-|.+.+..|++++|..++..+-..+..... ++.....+..+|
T Consensus 117 ~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la------ 176 (283)
T 3edt_B 117 KVLGKFHPD--------------VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA------ 176 (283)
T ss_dssp HHHCTTCHH--------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH------
T ss_pred HHcCCCChH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------
Confidence 988865322 2344555677888999999999999988765433321 233333333221
Q ss_pred HHHHHHhCCCHHHHHHHHHhc
Q 014748 162 KRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 162 rrALrat~gdve~Av~~L~e~ 182 (419)
-+....|+.+.|+.++..-
T Consensus 177 --~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 177 --SCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp --HHHHHHTCHHHHHHHHHHH
T ss_pred --HHHHHcCCHHHHHHHHHHH
Confidence 1223358899999988544
No 88
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.75 E-value=0.0058 Score=50.67 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=68.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.+.++|..++++|+|++|+.++-.|= +.-.+.+.+-..+.+||+.+++ ..+|..-+.+|-+.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al-----------~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~-- 76 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAV-----------KRDPENAILYSNRAACLTKLME---FQRALDDCDTCIRL-- 76 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HhCCCCHHHHHHHhhHHHhhcc---HHHHHHHHHHHHHh--
Confidence 4567899999999999999999987763 3334556777889999999876 34444444333221
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
.. .. ...+...|.+.+..|++++|...+.++-+.
T Consensus 77 -------------~p-~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 77 -------------DS-KF------IKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp -------------CT-TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------hh-hh------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11 11 123444588888999999999999888553
No 89
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.69 E-value=0.023 Score=51.40 Aligned_cols=151 Identities=13% Similarity=-0.008 Sum_probs=103.6
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..++..|..++.+++|++|+.++-.|=+.+..... ..-.+.+....-+.+||+.++ ...+|...+.++-..++
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG---HDHPDVATMLNILALVYRDQN---KYKDAANLLNDALAIRE 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC---SSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999988776543310 011234556677889998876 57899999999999999
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccC--CCCHHHHHHHHhCCCCHHHH
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQL--QVPDESLSLVMSMGFKEQDA 161 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l--~vdee~l~~LmeMGF~~~~A 161 (419)
+.+|.+.... ...+..-|.+.+..|++++|..++..+-...... .-++.....+..+|
T Consensus 101 ~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la------ 160 (311)
T 3nf1_A 101 KTLGKDHPAV--------------AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA------ 160 (311)
T ss_dssp HHHCTTCHHH--------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------
T ss_pred HHhCCCChHH--------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH------
Confidence 8888554332 2334445777788999999999999886655333 22233333333222
Q ss_pred HHHHHHhCCCHHHHHHHHHhc
Q 014748 162 KRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 162 rrALrat~gdve~Av~~L~e~ 182 (419)
-+....|+.+.|+.++..-
T Consensus 161 --~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 161 --LLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp --HHHHTTTCHHHHHHHHHHH
T ss_pred --HHHHHcCCHHHHHHHHHHH
Confidence 1233468899999988544
No 90
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=96.65 E-value=0.0019 Score=62.11 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 014748 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 181 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e 181 (419)
+++|.+|++|||++..|+.||..+++|++.|+++|+.
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 5799999999999999999999999999999999986
No 91
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.64 E-value=0.011 Score=53.60 Aligned_cols=157 Identities=12% Similarity=0.004 Sum_probs=97.7
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCC----------CCHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDI----------SWLSEAGI 73 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~----------~~l~dA~~ 73 (419)
+..++..|..++..++|++|+.++..|-+.+...+.. ...+.....+.+||+.+++. ...++|..
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-----VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 3456778888899999999999998888777665432 23456777889999998872 22445555
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHh
Q 014748 74 RLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMS 153 (419)
Q Consensus 74 rL~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~Lme 153 (419)
.+..|...|+++.- + .+. ..........+...|.+.+..|++++|..++..+-...............+..
T Consensus 158 ~~~~A~~~~~~a~~-----~--~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 158 ALQAAVDLYEENLS-----L--VTA--LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp HHHHHHHHHHHHHH-----H--HHH--HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----H--HHh--cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 56666666655431 0 000 01123334556667888889999999999998886655443222222222222
Q ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 154 MGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 154 MGF~~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
+| -+....|+.+.|+.++..-
T Consensus 229 l~--------~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 229 LG--------NAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HH--------HHHHHHTCHHHHHHHHHHH
T ss_pred HH--------HHHHHcCCHHHHHHHHHHH
Confidence 21 1223357899999987543
No 92
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.54 E-value=0.018 Score=49.94 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=70.0
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
++.++.+|..++++++|++|+.++..|- +..+-....+.+||+.+++ ...|...+.+|-+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--------------~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~-- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--------------DPHSRICFNIGCMYTILKN---MTEAEKAFTRSINR-- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--------------SCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--------------CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh--
Confidence 4668899999999999999999998771 2235577889999999876 45555555544332
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhcc
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~ 140 (419)
++ . ....+..-|.+.+..|++++|...+..+-...+.
T Consensus 67 -----~~---------~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 67 -----DK---------H------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp -----CT---------T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred -----Cc---------c------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 11 0 1223445577888999999999999988765543
No 93
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.48 E-value=0.042 Score=52.90 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=103.2
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++-+|...+.+++|++|+.++..|-+.+...+.. ...|.....+.+||+.++ ..+.|...+.+|-+.|.+.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~a~~~~~lg~~y~~~~---~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD-----IEKAEFHFKVAEAYYHMK---QTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH-----HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh-----HHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHhC
Confidence 45678999999999999999999999887665433 345667778899999877 4688999999999888765
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL 165 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrAL 165 (419)
.+ ...+ ....+..-|.+.+..|++++|..++.++-.......-+......+..+|. +
T Consensus 175 ~~-~~~~--------------~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~--------~ 231 (378)
T 3q15_A 175 PL-YSIR--------------TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN--------S 231 (378)
T ss_dssp TT-CHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------H
T ss_pred CC-chhh--------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------H
Confidence 43 1111 22334455777889999999999999887665544222222223333331 2
Q ss_pred HHhCCCHHHHHHHHHhch
Q 014748 166 RICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 166 rat~gdve~Av~~L~e~~ 183 (419)
....|+.+.|+.++..-.
T Consensus 232 y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 232 YDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 334688999999885543
No 94
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.45 E-value=0.05 Score=52.29 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=102.6
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 014748 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (419)
Q Consensus 7 lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (419)
++-+|..++.+++|++|+.++..|-+.+...+... ..+....-+.|||+.+++ .+.|...+.+|-+.|.+.-
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~a~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI-----EKAEFFFKMSESYYYMKQ---TYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH-----HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH-----HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCc
Confidence 44599999999999999999999998877654432 356677889999999764 6899999999998887752
Q ss_pred CCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHH
Q 014748 87 GKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALR 166 (419)
Q Consensus 87 G~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrALr 166 (419)
+ ...+ ..+.+..-|.+.+..|++++|..++.++-....+..-+......+..+|. +.
T Consensus 178 ~-~~~~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~--------~y 234 (383)
T 3ulq_A 178 A-YNIR--------------LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL--------CK 234 (383)
T ss_dssp T-THHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HH
T ss_pred c-chHH--------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--------HH
Confidence 2 1222 12344556777889999999999999987766555322222223333221 33
Q ss_pred HhCCCHHHHHHHHHhc
Q 014748 167 ICSQDVGSAIDFLVEE 182 (419)
Q Consensus 167 at~gdve~Av~~L~e~ 182 (419)
...|+.+.|+.++..-
T Consensus 235 ~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 235 NSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 4468899999988544
No 95
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.40 E-value=0.041 Score=49.65 Aligned_cols=147 Identities=12% Similarity=-0.004 Sum_probs=97.1
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..++..|...+..++|++|+.++-.|=+.+...+. ....+.....+.+||+.+++ .+.|...+.++-+.+.
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGE---FETASEYYKKTLLLAR 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Confidence 456788899999999999999999888776655322 22345567788999998875 5778888777776665
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHH
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Arr 163 (419)
+. + +. ......+..-|.+.+..|++++|..++..+-.......-.......+..+|
T Consensus 255 ~~-~-~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la-------- 310 (338)
T 3ro2_A 255 QL-K-DR--------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG-------- 310 (338)
T ss_dssp HT-T-CH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------
T ss_pred hh-c-ch--------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH--------
Confidence 53 2 11 222344455677788999999999999988666544322222222222111
Q ss_pred HHHHhCCCHHHHHHHHHhc
Q 014748 164 ALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 164 ALrat~gdve~Av~~L~e~ 182 (419)
-+....|+.+.|..++..-
T Consensus 311 ~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 311 NAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHH
Confidence 1223358899999987433
No 96
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=96.40 E-value=0.0043 Score=47.71 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHH
Q 014748 142 QVPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLV 180 (419)
Q Consensus 142 ~vdee~l~~LmeM-GF~~~~ArrALrat~gdve~Av~~L~ 180 (419)
.|..+.|..|.+. |.+..+|+.||..|+||++.|+.||.
T Consensus 7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4566788888885 99999999999999999999999994
No 97
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.37 E-value=0.054 Score=51.00 Aligned_cols=147 Identities=13% Similarity=0.001 Sum_probs=99.4
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..+...|..+++.++|++|+.++-.|-+.+...+.. ...+.....+.+||+.+++ .+.|...+.++-+.+.
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-----AAERRAYSNLGNAYIFLGE---FETASEYYKKTLLLAR 258 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999998887775432 2345567788999988765 6788888888877766
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHH
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Arr 163 (419)
+. + + .......+..-|.+.+..|++++|..++..+-.......-.......+..+|
T Consensus 259 ~~-~-~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la-------- 314 (406)
T 3sf4_A 259 QL-K-D--------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG-------- 314 (406)
T ss_dssp HT-T-C--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------
T ss_pred hC-c-C--------------chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH--------
Confidence 53 2 1 1122334445577788999999999999988766555432222222222111
Q ss_pred HHHHhCCCHHHHHHHHHhc
Q 014748 164 ALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 164 ALrat~gdve~Av~~L~e~ 182 (419)
-+....|+.+.|+.++..-
T Consensus 315 ~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 1223457899999987544
No 98
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.34 E-value=0.06 Score=47.61 Aligned_cols=114 Identities=15% Similarity=0.036 Sum_probs=83.8
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..+...|..+++.++|++|+.++..|=+.+..... ..--+.+.....+.+||+.++ ..+.|...+.++-+.++
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG---KFHPDVAKQLNNLALLCQNQG---KAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999988776543200 001234556677889998776 47899999999999998
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
+.+|.+... ....+..-|.+.+..|++++|..++..+-..
T Consensus 159 ~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 159 TRLGPDDPN--------------VAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHSCTTCHH--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhcCCCCHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888865332 2233445577778899999999999887554
No 99
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.29 E-value=0.047 Score=45.93 Aligned_cols=110 Identities=17% Similarity=0.203 Sum_probs=75.7
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhcc-------CChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSL-------CDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRL 75 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~-------C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL 75 (419)
.+..+.++|..++++++|.+|+.++..|=+.+.. .++.....-.+.+.+...+..||+.+++ ...|...+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~---~~~A~~~~ 86 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD---LHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHH
Confidence 3567899999999999999999999988776543 2233333345667778889999999986 34444443
Q ss_pred HHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 76 RKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 76 ~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
.+|-+. ++. . ...+...|.+.+..|++++|...+..+-..
T Consensus 87 ~~al~~-------~p~----------~-----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 87 SEVLKR-------EET----------N-----EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHH-------STT----------C-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhc-------CCc----------c-----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 333222 111 1 123334588888999999999998887554
No 100
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.22 E-value=0.049 Score=46.39 Aligned_cols=116 Identities=13% Similarity=-0.022 Sum_probs=84.3
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
.+..++..|...+..++|++|+.++..|=+.|...+.. ....+.....+.|||+.+++ .++|...+.++-..+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED----PLAASANAYEVATVALHFGD---LAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc----HHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence 35678889999999999999999999998887655421 12346677888999999875 678888888887765
Q ss_pred HHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccC
Q 014748 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQL 141 (419)
Q Consensus 83 ~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l 141 (419)
++ .| +. ......+..-|.+.+..|++++|..++..+-....+.
T Consensus 138 ~~-~~-~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 138 QQ-AD-DQ--------------VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HH-TT-CH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred Hh-cc-ch--------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 43 23 11 1123334556778889999999999998886655443
No 101
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.21 E-value=0.03 Score=52.75 Aligned_cols=156 Identities=13% Similarity=-0.010 Sum_probs=95.8
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCC----------CCCHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRD----------ISWLSEAGIR 74 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~----------~~~l~dA~~r 74 (419)
..+...|..+...++|++|+.++..|=+.+...+.. ...+....-+.+||+.+++ ....+.|...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-----VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 345667777788888888888887777666543322 2346677788999999888 2334556666
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhC
Q 014748 75 LRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSM 154 (419)
Q Consensus 75 L~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeM 154 (419)
+..|...|.++.- + .+.. .......+.+..-|.+.+..|++++|...+..+-.......-.......+..+
T Consensus 163 ~~~A~~~~~~al~-----~--~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 233 (406)
T 3sf4_A 163 LQAAVDFYEENLS-----L--VTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233 (406)
T ss_dssp HHHHHHHHHHHHH-----H--HHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----H--HHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6666666655432 0 1100 11123344555668888899999999999998877665543222222222222
Q ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 155 GFKEQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 155 GF~~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
| -+....|+.+.|+.++..-
T Consensus 234 a--------~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 234 G--------NAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp H--------HHHHHTTCHHHHHHHHHHH
T ss_pred H--------HHHHHcCChHHHHHHHHHH
Confidence 1 1233468899999987543
No 102
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.20 E-value=0.057 Score=51.58 Aligned_cols=148 Identities=9% Similarity=-0.039 Sum_probs=99.8
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..++..|..+++.++|++|+.++..|=+.+...... ...+.....+.+||+.+++ .+.|...+.++-..+.
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR-----AAERRANSNLGNSHIFLGQ---FEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999988777653322 2234566778899987764 6788888888877776
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHH
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Arr 163 (419)
+. | +. ....+.+..-|.+.+..|++++|..++..+-.......-.......+.. .
T Consensus 295 ~~-~-~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------l 349 (411)
T 4a1s_A 295 EL-G-ER--------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWS---------L 349 (411)
T ss_dssp HT-T-CH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---------H
T ss_pred Hc-C-CH--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH---------H
Confidence 54 3 11 1223444556777789999999999999886655443221222222221 2
Q ss_pred H-HHHhCCCHHHHHHHHHhchh
Q 014748 164 A-LRICSQDVGSAIDFLVEEKA 184 (419)
Q Consensus 164 A-Lrat~gdve~Av~~L~e~~~ 184 (419)
| +....|+.+.|+.++..-..
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 2 23346899999998865543
No 103
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.12 E-value=0.026 Score=47.61 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=71.0
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.++..|..++++++|++|+.++-.|=+.. -+.+.....+.+||+.+++ ..+|..-+.+|-+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~-- 74 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----------PANPIYLSNRAAAYSASGQ---HEKAAEDAELATVV-- 74 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------CcCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHh--
Confidence 4568899999999999999999998775543 2346677889999999875 44555444444332
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
++. ....+..-|.+.+..|++++|...+..+-...
T Consensus 75 -----~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 -----DPK---------------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -----CTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCC---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 111 13344556888889999999999998876644
No 104
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.026 Score=45.24 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=69.8
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.++.+|..++++++|++|+.++-.|=+.. -+.+....-+.+||+.+++ ...|..-+.+|-+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~-- 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----------PEDARGYSNRAAALAKLMS---FPEAIADCNKAIEK-- 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------CCChHHHHHHHHHHHHhcC---HHHHHHHHHHHHHh--
Confidence 4568899999999999999999998775442 2346677788999999875 44555444444332
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
++. . ...+..-|.+.+..|++++|...+..+-...
T Consensus 68 -----~p~---------~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 68 -----DPN---------F------VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp -----CTT---------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCC---------c------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 111 1 2234445778889999999999998886544
No 105
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.01 E-value=0.24 Score=43.54 Aligned_cols=134 Identities=10% Similarity=-0.032 Sum_probs=83.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++.+|..++++++|++|+.++..|=+.... .|..++ .-+.+||+.+++ .+ .|...|+++
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~-~~~~~~~~~~~~---~~-------~A~~~~~~a 68 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNN---------QDSVTA-YNCGVCADNIKK---YK-------EAADYFDIA 68 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---------CCHHHH-HHHHHHHHHTTC---HH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCC---------CCcHHH-HHHHHHHHHhhc---HH-------HHHHHHHHH
Confidence 5788999999999999999999888665431 222333 338999999875 33 444445544
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHH-
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA- 164 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrA- 164 (419)
...++. ....+..-|.+.+..|++++|...+..+-...+. ++.....+.. --..+|
T Consensus 69 l~~~p~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~-----~~~~~g~ 125 (228)
T 4i17_A 69 IKKNYN---------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG---NATIEKLYAI-----YYLKEGQ 125 (228)
T ss_dssp HHTTCS---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHH-----HHHHHHH
T ss_pred HHhCcc---------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHH-----HHHHHhH
Confidence 422221 2334555678888999999999999888665432 2222222211 111122
Q ss_pred HHHhCCCHHHHHHHHHhc
Q 014748 165 LRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 165 Lrat~gdve~Av~~L~e~ 182 (419)
+....|+.+.|+.++..-
T Consensus 126 ~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 126 KFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHH
Confidence 223467899999887543
No 106
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.99 E-value=0.17 Score=48.52 Aligned_cols=149 Identities=11% Similarity=0.013 Sum_probs=103.9
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
.+..++..|......++|+.|+.++..|=+.|..-+.. ..+.+.....+.+||+.+++ .+.|...+.+|-+.+
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 214 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY----NIRLLQCHSLFATNFLDLKQ---YEDAISHFQKAYSMA 214 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT----HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999988776431 12345566677888887764 788888888888887
Q ss_pred HHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHH
Q 014748 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAK 162 (419)
Q Consensus 83 ~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Ar 162 (419)
.+. + +.. ...+.+.--|.+.+..|++++|..++..+-.........+.....+..+|
T Consensus 215 ~~~-~-~~~--------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~------- 271 (383)
T 3ulq_A 215 EAE-K-QPQ--------------LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT------- 271 (383)
T ss_dssp HHT-T-CHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH-------
T ss_pred HHc-C-ChH--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH-------
Confidence 765 3 222 22233444677888999999999999998775544433233333343332
Q ss_pred HHHHHhCCCHHHHHHHHHhc
Q 014748 163 RALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 163 rALrat~gdve~Av~~L~e~ 182 (419)
-+....|+.+.|+.|+...
T Consensus 272 -~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 272 -QIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp -HHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHCCCHHHHHHHHHHH
Confidence 1233468999999998544
No 107
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=95.96 E-value=0.0077 Score=46.29 Aligned_cols=38 Identities=21% Similarity=0.097 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHHhh
Q 014748 214 AVDIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL 251 (419)
Q Consensus 214 ~v~~~~l~~L~~M-GF~~~~A~~ALr~t~nnve~Al~~L 251 (419)
.++.+.|..|++. |.....|++||..++||++.|++||
T Consensus 7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4667889999998 8888999999999999999999998
No 108
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.92 E-value=0.0084 Score=45.28 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=39.2
Q ss_pred cchHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 274 QAADAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 274 ~~d~~~I~~L~~M--GF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
.+.++.|.+|.+| +++...++.+|++|+||++.|++.|+.-..+
T Consensus 7 ~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 4578899999999 7789999999999999999999999986555
No 109
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.26 Score=42.99 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=74.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.+..+|..+++.++|++|+.++..+=+.. +.+....-+.+||+.+++ ...|..-+.++-+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~~ 69 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH------------KDITYLNNRAAAEYEKGE---YETAISTLNDAVEQGR 69 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------CCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------------ccHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCc
Confidence 4568899999999999999999999886654 224455678999999875 4566666665554433
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
... +........+..-|.+.+..|++++|...+..+-..
T Consensus 70 ~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 108 (258)
T 3uq3_A 70 EMR---------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108 (258)
T ss_dssp HTT---------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccc---------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 221 222234556666788888999999999999888663
No 110
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.86 E-value=0.29 Score=46.95 Aligned_cols=144 Identities=13% Similarity=-0.041 Sum_probs=99.0
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..+.-.|...++.++|++|+.++..|=+.+...+... ..+.....+.|||+.+++ .+.|...+.+|-..++
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~lg~~y~~~~~---~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR-----FIAISLLNIANSYDRSGD---DQMAVEHFQKAAKVSR 253 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 45567789999999999999999999988876654432 456677789999999875 6788888888887776
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHH
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Arr 163 (419)
+..- +. .......-|.+.+..|++++|..++.++-+...+..- +.....+ ....
T Consensus 254 ~~~~--------------~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~--------~~l~ 307 (378)
T 3q15_A 254 EKVP--------------DL---LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH-KFYKELF--------LFLQ 307 (378)
T ss_dssp HHCG--------------GG---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC-SCHHHHH--------HHHH
T ss_pred hhCC--------------hh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHH--------HHHH
Confidence 5511 11 1334445677888999999999999998776654422 2111111 1123
Q ss_pred HHHHhCCC---HHHHHHHHHh
Q 014748 164 ALRICSQD---VGSAIDFLVE 181 (419)
Q Consensus 164 ALrat~gd---ve~Av~~L~e 181 (419)
.+....++ +..|+.++..
T Consensus 308 ~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 308 AVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHh
Confidence 34444566 7888887644
No 111
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.84 E-value=0.12 Score=49.22 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=96.5
Q ss_pred hhhhhHhHHHHHHhhc-----------------hHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCC
Q 014748 4 GLMLHANAKSLIKRHM-----------------YKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDIS 66 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~-----------------y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~ 66 (419)
+..+...|..+.+.++ |++|+.++..|=+.+.... .....+.....+.+||+.+++
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~la~~~~~~g~-- 238 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG-----DRGAQGRACGNLGNTYYLLGD-- 238 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHcCC--
Confidence 3466778888999999 7777777777655544322 123456677888999998765
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHH
Q 014748 67 WLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDE 146 (419)
Q Consensus 67 ~l~dA~~rL~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee 146 (419)
.+.|...+.+|-+.+.+ ++ +.. ...+.+..-|.+.+..|++++|..++..+-.......-...
T Consensus 239 -~~~A~~~~~~al~~~~~-~~-~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 301 (411)
T 4a1s_A 239 -FQAAIEHHQERLRIARE-FG-DRA--------------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV 301 (411)
T ss_dssp -HHHHHHHHHHHHHHHHH-HT-CHH--------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -hHHHHHHHHHHHHHHHh-cC-CcH--------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 67888888888877766 33 111 12344455677788999999999999988776655422222
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 147 SLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 147 ~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
....+..+| -+....|+.+.|+.++..-
T Consensus 302 ~~~~~~~la--------~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 302 EAQSCYSLG--------NTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHH--------HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--------HHHHHcCCHHHHHHHHHHH
Confidence 222222211 1334468999999988544
No 112
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.74 E-value=0.11 Score=41.16 Aligned_cols=106 Identities=16% Similarity=0.100 Sum_probs=68.8
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.++.+|..+++.++|++|+.++-.+-+.+.... ..+-..+-+.+||+.+++ .+.|...+.++-+.
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--------~~~~~~~~lg~~~~~~~~---~~~A~~~~~~~~~~-- 68 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGV--------YTPNALYWLGESYYATRN---FQLAEAQFRDLVSR-- 68 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST--------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc--------ccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHH--
Confidence 34578899999999999999999988766554321 011345668999999876 34444444443321
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhc
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 139 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~ 139 (419)
+. +. + .....+..-|.+.+..|++++|...+..+-..++
T Consensus 69 --~p-~~-----------~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 69 --YP-TH-----------D---KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp --CT-TS-----------T---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred --CC-CC-----------c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 11 11 0 0112233447778899999999999988866553
No 113
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.62 E-value=0.085 Score=42.20 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=71.0
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..++..|..+++.++|++|+.++..|=+... +.+.....+.+||+.+++. +.|...+.++-+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----------~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~-- 72 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----------LVAVYYTNRALCYLKMQQP---EQALADCRRALEL-- 72 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-----------CcHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHh--
Confidence 45688999999999999999999988766533 2355677889999988763 4555444444332
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhc
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 139 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~ 139 (419)
++. ....+..-|.+.+..|++++|...+..+-...+
T Consensus 73 -----~p~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 73 -----DGQ---------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp -----CTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----Cch---------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 111 123445567888899999999999988865543
No 114
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.56 E-value=0.23 Score=38.43 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=74.5
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.++..|..+++.++|++|+.++..|=+... +.+.....+.+||+.+++ ..+|...+.++-....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP-----------TNMTYITNQAAVYFEKGD---YNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----------ccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhcc
Confidence 34678899999999999999999988765432 234566788999998875 5667666666665543
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
.. +.+. ......+..-|.+.+..|++++|...+..+-..
T Consensus 70 ~~-~~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 70 EN-REDY--------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HS-TTCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cc-chhH--------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 22 1111 122344556678888999999999999887653
No 115
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.43 E-value=0.29 Score=46.37 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=89.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
..++-.|..++.+++|++|+.++..|=+.+...+... ..+.....+.++|+..+ .++.|...+.++-..+.+
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~la~~~~~~G---~~~~A~~~~~~al~~~~~ 125 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH-----YALWSLIQQSEILFAQG---FLQTAWETQEKAFQLINE 125 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHH
Confidence 3456667777788888888888877777666544322 12334456677777665 456777777777776665
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHH
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA 164 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrA 164 (419)
..+.+. ......+..-|.+.+..|++++|..++..+-.......... .+..+..+ + -
T Consensus 126 ~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l------a--~ 182 (373)
T 1hz4_A 126 QHLEQL--------------PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAML------I--Q 182 (373)
T ss_dssp TTCTTS--------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHH------H--H
T ss_pred hccccC--------------cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHH------H--H
Confidence 544211 11223344567778899999999999998876555442211 22212111 1 1
Q ss_pred HHHhCCCHHHHHHHHHh
Q 014748 165 LRICSQDVGSAIDFLVE 181 (419)
Q Consensus 165 Lrat~gdve~Av~~L~e 181 (419)
+....|+.+.|..++..
T Consensus 183 ~~~~~g~~~~A~~~l~~ 199 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNR 199 (373)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 23346889999988743
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.27 E-value=0.2 Score=47.05 Aligned_cols=144 Identities=10% Similarity=0.016 Sum_probs=84.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
..++.-|..+.+.++|++|+.++..|=+.|...+. ....+.....|.+||.. ...+.|...+.+|-..+..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~~~a~~~~~lg~~~~~----g~~~~A~~~~~~Al~~~~~ 147 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-----PDTAAMALDRAGKLMEP----LDLSKAVHLYQQAAAVFEN 147 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHh
Confidence 35566677777777777777777777666654332 12334455567777754 5677777777777776654
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHH
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA 164 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrA 164 (419)
.| +.. .....+.--|.+.+..|++++|..++..+-....+..........+. ..+
T Consensus 148 -~~-~~~--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~~g 202 (307)
T 2ifu_A 148 -EE-RLR--------------QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI---------AQV 202 (307)
T ss_dssp -TT-CHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------HHH
T ss_pred -CC-Chh--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH---------HHH
Confidence 22 111 11222333466677889999999999888665544321111111111 122
Q ss_pred -HHHhCCCHHHHHHHHHhc
Q 014748 165 -LRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 165 -Lrat~gdve~Av~~L~e~ 182 (419)
++...|+.+.|+.++..-
T Consensus 203 ~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 223458899999987544
No 117
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.06 E-value=0.11 Score=51.24 Aligned_cols=110 Identities=14% Similarity=0.045 Sum_probs=76.0
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCC-----hhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCD-----PKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~-----~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~a 78 (419)
+-.+...|..++++++|++|+.++..|=+.+..+. .+.++.-.+.+.+.+.+.|||+.+++ ...|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~----------~~~A 292 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD----------WQGA 292 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC----------HHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC----------HHHH
Confidence 44578999999999999999999988877654431 12222334567778889999999886 3445
Q ss_pred HHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 79 REGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 79 e~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
...|++..-.++. .- ..+...|.+.+..|++++|...+..+-+..
T Consensus 293 ~~~~~~al~~~p~----------~~-----~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 293 VDSCLEALEIDPS----------NT-----KALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHTTCTT----------CH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCch----------hH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 5555555443331 11 223345777888999999999998886643
No 118
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.43 Score=41.57 Aligned_cols=146 Identities=16% Similarity=0.046 Sum_probs=91.6
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
..+...|..+++.++|++|+.++..|=+......+. ....+....-++.||+.+++ ..+|..-+.++-+...
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~- 110 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD----YKVISKSFARIGNAYHKLGD---LKKTIEYYQKSLTEHR- 110 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc----hHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcCc-
Confidence 356788999999999999999999887765443221 11236777889999998765 5677777777665311
Q ss_pred HhCCChHHHHHHHcC-------------CcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHH
Q 014748 85 AHGKDSSRVRLLQAG-------------RHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLV 151 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~-------------~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~L 151 (419)
+.. +..-.|. ..|. ....+...|.+.+..|++++|...+..+-...+. +. ..+
T Consensus 111 ----~~~-~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~---~~~ 176 (258)
T 3uq3_A 111 ----TAD-ILTKLRNAEKELKKAEAEAYVNPE---KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DA---RGY 176 (258)
T ss_dssp ----CHH-HHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH---HHH
T ss_pred ----hhH-HHHHHhHHHHHHHHHHHHHHcCcc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---cH---HHH
Confidence 100 0000010 1121 2345566788888999999999999888654322 11 111
Q ss_pred HhCCCCHHHHHHH-HHHhCCCHHHHHHHHHh
Q 014748 152 MSMGFKEQDAKRA-LRICSQDVGSAIDFLVE 181 (419)
Q Consensus 152 meMGF~~~~ArrA-Lrat~gdve~Av~~L~e 181 (419)
. .+| +....|+.+.|+.++..
T Consensus 177 ~---------~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 177 S---------NRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp H---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred H---------HHHHHHHHhCCHHHHHHHHHH
Confidence 1 122 22346789999998743
No 119
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.05 E-value=0.13 Score=39.00 Aligned_cols=97 Identities=12% Similarity=0.011 Sum_probs=67.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
-.++..|..+++.++|++|+.++..+=+.+. +.+.....+.+||+.+++ .+.|...+.++-+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~--- 67 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-----------HNHVLYSNRSAAYAKKGD---YQKAYEDGCKTVDL--- 67 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----------CcHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHh---
Confidence 4578899999999999999999988765432 224566778899998875 45555544444332
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
++ . ....+..-|.+.+..|++++|...+..+-..
T Consensus 68 ----~~---------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 68 ----KP---------D------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ----CT---------T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ----Cc---------c------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 11 1 1123444567778899999999998877553
No 120
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.99 E-value=0.027 Score=41.04 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=34.3
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHhch
Q 014748 145 DESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 145 ee~l~~LmeM--GF~~~~ArrALrat~gdve~Av~~L~e~~ 183 (419)
++.+..|.+| .-+...+|.+|+.++||+++|++-|++..
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 4779999999 44688999999999999999999998763
No 121
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=94.83 E-value=0.12 Score=40.41 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=68.1
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
...++..|..++++++|++|+.++..+=+.+.. .+.....+.+||+.+++ ..+|...+.++-+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~- 80 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-----------DAKLYSNRAACYTKLLE---FQLALKDCEECIQLE- 80 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-----------CHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhC-
Confidence 346788999999999999999999888654322 24556778888877654 556655555544321
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
. + ....+..-|.+.+..|++++|...+..+-...
T Consensus 81 ---~-~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 81 ---P-T-----------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp ---T-T-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---C-C-----------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 1 1 11233445777889999999999998876543
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.78 E-value=0.11 Score=42.44 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=69.5
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..++..|..+++.++|++|+.++..|=+.... .+.....+.+||+.+++ .+.|..-+.++-+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~-- 76 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-----------NAIYYGNRSLAYLRTEC---YGYALGDATRAIEL-- 76 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----------ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh--
Confidence 456889999999999999999999887654322 24556778999998765 45555554444432
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
++. . ...+..-|.+.+..|++++|...+..+-...
T Consensus 77 -----~~~---------~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 77 -----DKK---------Y------IKGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp -----CTT---------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -----Ccc---------c------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 110 0 1234456777889999999999998886543
No 123
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.75 E-value=0.034 Score=41.94 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHhchh
Q 014748 141 LQVPDESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (419)
Q Consensus 141 l~vdee~l~~LmeM--GF~~~~ArrALrat~gdve~Av~~L~e~~~ 184 (419)
..+.++.|.+|.+| +++..-.+.+|++++||+|+|++-|++...
T Consensus 6 ~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 6 SGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE 51 (59)
T ss_dssp SSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence 35678999999999 446888999999999999999999987643
No 124
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=94.74 E-value=0.35 Score=48.07 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=77.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHH
Q 014748 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELV 224 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~t~~~~~v~~~~l~~L~ 224 (419)
+..|..|.+|||+..+..++|...-+=..+ .. ...|+.|.
T Consensus 47 e~~l~~L~d~Gfs~~~i~~il~~~P~il~~-------------~l---------------------------~~~i~~L~ 86 (335)
T 4fp9_B 47 ERVMSSLLDMGFSNAHINELLSVRRGASLQ-------------QL---------------------------LDIISEFI 86 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCSSCCHH-------------HH---------------------------HHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhCcccchh-------------HH---------------------------HHHHHHHH
Confidence 457889999999999999888774321100 00 12477888
Q ss_pred hCCCCHHHHHHHHHhcCCC-------HHHHHHhhc-----CCcchhHHhhhhhHHhhhhhccchHHHHHHH-HhCCCCHH
Q 014748 225 SIGFEKELVAEALRRNEND-------SQKALDDLT-----NPESNSAIQLYIESRKRKRCRQAADAKIEQL-VAMGFERP 291 (419)
Q Consensus 225 ~MGF~~~~A~~ALr~t~nn-------ve~Al~~L~-----npd~~~~L~~~~~~~~~~~~~~~d~~~I~~L-~~MGF~~~ 291 (419)
.+||+.+.+.++|+.++.- +..-+.||. ..++...+...+.-.. .....-...+.-| ..|||+.+
T Consensus 87 ~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~--~s~e~i~~~v~~L~~~lGfS~~ 164 (335)
T 4fp9_B 87 LLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFT--MRQQDINDTVRLLKEKCLFTVQ 164 (335)
T ss_dssp HTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHCGGGGT--SCHHHHHHHHHHHHHTSCCCHH
T ss_pred HcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhc--cChHHHHHHHHHHHHHcCCCHH
Confidence 8899888888888888753 222233331 1111111111100000 0000011233444 58999999
Q ss_pred HHHHHHHHc-------CCCHHHHHHHhhcCCCC
Q 014748 292 RVIEACRAG-------GDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 292 ~A~~AL~~~-------~nN~e~A~d~Ll~~~~~ 317 (419)
++..++..| ..++..-++||...++-
T Consensus 165 ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl 197 (335)
T 4fp9_B 165 QVTKILHSCPSVLREDLGQLEYKFQYAYFRMGI 197 (335)
T ss_dssp HHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCC
Confidence 999998865 34678888999888774
No 125
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.68 E-value=0.41 Score=43.15 Aligned_cols=147 Identities=11% Similarity=0.024 Sum_probs=86.0
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
-.++.+|..++++++|++|+.+|-.+=+.+..- ...+-..+-+.+||+.+++ ...|...+.++-+.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--------~~~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~~-- 82 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH--------EWAADAQFYLARAYYQNKE---YLLAASEYERFIQIY-- 82 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS--------TTHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--------cchHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHC--
Confidence 457899999999999999999998876655321 1225567789999999875 455555554443321
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhc--------cCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhC--
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYH--------SGQFDKARNALTSAQAKFFQLQVPDESLSLVMSM-- 154 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~--------~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeM-- 154 (419)
..++ . ....+..-|.+.+. .|++++|...+..+-..++.-..-...+..+...
T Consensus 83 --p~~~----------~-----~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~ 145 (261)
T 3qky_A 83 --QIDP----------R-----VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA 145 (261)
T ss_dssp --TTCT----------T-----HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred --CCCc----------h-----hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH
Confidence 1110 1 11223334666667 8999999999998877665432112222111110
Q ss_pred CCCHHHHHHHH-HHhCCCHHHHHHHHHh
Q 014748 155 GFKEQDAKRAL-RICSQDVGSAIDFLVE 181 (419)
Q Consensus 155 GF~~~~ArrAL-rat~gdve~Av~~L~e 181 (419)
.+....-.+|. ....|+.+.|+.++..
T Consensus 146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 146 KLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 00111122232 2346788888887643
No 126
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.66 E-value=0.17 Score=52.52 Aligned_cols=124 Identities=12% Similarity=0.153 Sum_probs=92.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhh----hhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMG----EEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~a----de~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
..+.+++..+..+|+|++|+.++..| .+.|..-.+.++.+.+|.|.+. .+.....+|.....++-.
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y----------~~~g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVL----------SYLQAYEEASHYARRMVD 379 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH----------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----------HHhcCHHHHHHHHHHHHH
Confidence 34567888888999999999877655 5567778889999999988764 234678999999999999
Q ss_pred HHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhcc-CCCCHHHHHHHH
Q 014748 81 GIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ-LQVPDESLSLVM 152 (419)
Q Consensus 81 ~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~-l~vdee~l~~Lm 152 (419)
.+++.||+++--+..... . -|++.+++|++++|..++.+|-+-+.. +-.|-..+..+.
T Consensus 380 i~~~~lG~~Hp~~a~~l~----------n----La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 438 (490)
T 3n71_A 380 GYMKLYHHNNAQLGMAVM----------R----AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE 438 (490)
T ss_dssp HHHHHSCTTCHHHHHHHH----------H----HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHH----------H----HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999988876643321 1 245566899999999999988654433 334444444444
No 127
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.61 E-value=0.15 Score=43.17 Aligned_cols=143 Identities=13% Similarity=0.030 Sum_probs=81.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
-.++..|....++|+|++|+.++-.|=+.. | |.+-...-+.+||+.+++ ..+|...+.++...
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----p-------~~~~~~~~la~~~~~~~~---~~~a~~~~~~~~~~--- 68 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----P-------NNVETLLKLGKTYMDIGL---PNDAIESLKKFVVL--- 68 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----T-------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C-------CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---
Confidence 457789999999999999999998774432 2 334445677899998875 45555555554321
Q ss_pred HhCCChHHHHHHHcCC-----cchhhH------------HHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHH
Q 014748 85 AHGKDSSRVRLLQAGR-----HPELAL------------HLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDES 147 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~-----~~E~aL------------~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~ 147 (419)
.. +........|.. -.+.++ ........|.+.+..|++++|...+.++-+.. |..
T Consensus 69 -~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~------p~~ 140 (184)
T 3vtx_A 69 -DT-TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGF 140 (184)
T ss_dssp -CC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred -Cc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc------chh
Confidence 11 112221111110 000000 12234445777778888888888887765432 222
Q ss_pred HHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 014748 148 LSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180 (419)
Q Consensus 148 l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~ 180 (419)
...+..+| -+....|+.+.|+.++.
T Consensus 141 ~~~~~~lg--------~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 141 IRAYQSIG--------LAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp HHHHHHHH--------HHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHH--------HHHHHCCCHHHHHHHHH
Confidence 22222221 12234678888888774
No 128
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.58 E-value=0.84 Score=37.22 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=81.7
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..++..|+.+++.++|++|+.++-.+-+.+.. .+.....+.+||+..++ ..+|...+.++-+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~-- 71 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-----------DVDVALHLGIAYVKTGA---VDRGTELLERSLAD-- 71 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----------ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc--
Confidence 456788999999999999999999887654332 24556778999998765 45565555554433
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHH
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Arr 163 (419)
+. +. ...+...|.+.+..|++++|..++..+-...+. +... + ...
T Consensus 72 --~~-~~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~---~---------~~~ 116 (186)
T 3as5_A 72 --AP-DN-----------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI---NFNV---R---------FRL 116 (186)
T ss_dssp --CT-TC-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH---H---------HHH
T ss_pred --CC-CC-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---hHHH---H---------HHH
Confidence 11 11 122344566777889999999999887664322 1111 1 112
Q ss_pred H-HHHhCCCHHHHHHHHH
Q 014748 164 A-LRICSQDVGSAIDFLV 180 (419)
Q Consensus 164 A-Lrat~gdve~Av~~L~ 180 (419)
| +....|+.+.|+.++.
T Consensus 117 a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 117 GVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHH
Confidence 2 2234678999999874
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.52 E-value=0.22 Score=38.43 Aligned_cols=98 Identities=12% Similarity=-0.037 Sum_probs=68.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
..++..|..+++.++|++|+.++..+=+... +.+....-+.+||+.+++ ..+|..-+.++-+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-----------ANAVYFCNRAAAYSKLGN---YAGAVQDCERAICI--- 75 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHhhc---hHHHHHHHHHHHhc---
Confidence 4678899999999999999999987765432 235667788999998875 44555544444332
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
.. +. ...+..-|.+.+..|++++|...+..+-...
T Consensus 76 -~~-~~-----------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 76 -DP-AY-----------------SKAYGRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp -CT-TC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -Cc-cC-----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 11 11 1233445777889999999999998876543
No 130
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.39 E-value=0.81 Score=34.97 Aligned_cols=126 Identities=19% Similarity=0.100 Sum_probs=77.5
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
-.++..|..+++.++|++|+.++..+=+... +.+.....+.+||+..++ .++|...+.++-+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~--- 64 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------RSAEAWYNLGNAYYKQGD---YDEAIEYYQKALEL--- 64 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-----------cchhHHHHHHHHHHHhcC---HHHHHHHHHHHHHH---
Confidence 3567889999999999999999988754321 112334557888887764 45555555544322
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHH
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA 164 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrA 164 (419)
+++. ...+..-+.+.+..|++++|...+..+-...+. +... +. ..|
T Consensus 65 --~~~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~---~~---------~la 110 (136)
T 2fo7_A 65 --DPRS-----------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEA---WY---------NLG 110 (136)
T ss_dssp --CTTC-----------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHH---HH---------HHH
T ss_pred --CCCc-----------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHH---HH---------HHH
Confidence 1111 122333466777899999999999887654321 1111 11 122
Q ss_pred -HHHhCCCHHHHHHHHHh
Q 014748 165 -LRICSQDVGSAIDFLVE 181 (419)
Q Consensus 165 -Lrat~gdve~Av~~L~e 181 (419)
+....|+.+.|+.++..
T Consensus 111 ~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 111 NAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHH
Confidence 22346789999988743
No 131
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=94.37 E-value=0.024 Score=41.62 Aligned_cols=35 Identities=40% Similarity=0.627 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCCHHHHH--HHHHHhCCCHHHHHHHHH
Q 014748 146 ESLSLVMSMGFKEQDAK--RALRICSQDVGSAIDFLV 180 (419)
Q Consensus 146 e~l~~LmeMGF~~~~Ar--rALrat~gdve~Av~~L~ 180 (419)
+.|++++.|||+-...- +.|...+||+.+|++-|+
T Consensus 12 ~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 12 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 68999999999988885 778889999999999774
No 132
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.12 E-value=0.24 Score=47.71 Aligned_cols=162 Identities=11% Similarity=0.096 Sum_probs=94.8
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhh-hhccc-----hhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVL-EFVDN-----GPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 7 lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l-~~vDN-----~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
.-+.||.+++.|+|++|+.++..+-+.......... ..+.. +.---.-|+..|+.+++. +.|..-+.++..
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~---~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAK---DKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHH
Confidence 458899999999999999999999887765544211 11111 111124568888888775 456555555554
Q ss_pred HHHHHhCCCh-HH-HHHHHcCC-----cch------------------hhHHHHHHHHhHhhhhccCChhHHHHHhHhHH
Q 014748 81 GIERAHGKDS-SR-VRLLQAGR-----HPE------------------LALHLRMELLEGVAAYHSGQFDKARNALTSAQ 135 (419)
Q Consensus 81 ~f~r~yG~~~-~R-l~~lkg~~-----~~E------------------~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~ 135 (419)
.+.. .+... .+ +..+.|.. ..+ ..+.-|++.--|.+.+..|++++|...+..+.
T Consensus 84 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 84 YMMQ-FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHT-SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHH-ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 4432 12110 00 11111110 000 11234566666888889999999999999988
Q ss_pred hhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 014748 136 AKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180 (419)
Q Consensus 136 ~~~~~l~vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~ 180 (419)
.......-.+..+..+...| -+...-||.++|..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~A~~~~~ 199 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLES--------KVYHKLRNLAKSKASLT 199 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHH--------HHHHHTTCHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHH--------HHHHHhCcHHHHHHHHH
Confidence 77766654444444433322 23344667777777653
No 133
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=94.11 E-value=0.48 Score=42.15 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=66.8
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.++.+|..++++|+|++|+..|-.+-+.+.... ..+-..+.+.+||+.+++ .+.|...+.++-+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~--------~~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~--- 69 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP--------YSQQVQLDLIYAYYKNAD---LPLAQAAIDRFIR--- 69 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--------HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH---
Confidence 34678999999999999999999998887665432 123456778999999886 4445444443332
Q ss_pred HHhCCChH--HHHHHHcCCcchhhH-HHHHHHHhHhhhhccCChhHHHHHhHhHHhhhcc
Q 014748 84 RAHGKDSS--RVRLLQAGRHPELAL-HLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (419)
Q Consensus 84 r~yG~~~~--Rl~~lkg~~~~E~aL-~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~ 140 (419)
.|..+.. .....+|.+..+... .+.-...-+.+....|+.++|...+..+-..++.
T Consensus 70 -~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 70 -LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp -HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred -HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence 2332221 111112211100000 0000000112223467889999888887666654
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.01 E-value=0.29 Score=40.27 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=65.7
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++..|..+++.++|++|+.++-.+=+. --+.+....-+.+||+.+++ .. .|..+|++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~---~~-------~A~~~~~~a 78 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML-----------DHYDARYFLGLGACRQSLGL---YE-------QALQSYSYG 78 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTC---HH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHHhh---HH-------HHHHHHHHH
Confidence 4678999999999999999998655432 22344555678999998775 33 444444443
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhc
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 139 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~ 139 (419)
.--+ ...+ ..+..-|.+.+..|++++|...+..+-...+
T Consensus 79 l~~~---------p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 79 ALMD---------INEP------RFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHC---------TTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhcC---------CCCc------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 2211 1112 1234457788899999999999988866553
No 135
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.97 E-value=0.18 Score=50.96 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=72.3
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCCh----hhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDP----KVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~----~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
+-.++.+|..++++++|.+|+.++..|=+....... .-.+.-...+.+.+.+.|||+.+++ ...|...+.+|-
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~al 344 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE---YTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence 446889999999999999999999888665544321 1111122336677889999999875 344544444443
Q ss_pred HHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 80 EGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 80 ~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
+. ++ ..-.++ ...|.+.+..|++++|...+..+-+.
T Consensus 345 ~~-------~p----------~~~~a~-----~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 345 GL-------DS----------ANEKGL-----YRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HH-------ST----------TCHHHH-----HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hc-------CC----------ccHHHH-----HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 32 11 112233 33477788999999999999888653
No 136
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=93.92 E-value=0.49 Score=41.59 Aligned_cols=129 Identities=13% Similarity=0.054 Sum_probs=81.1
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..++..|+.++++++|++|+.++..+=+.. .+.+.....+.+||+.+++ ...|...+.++-+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~-- 100 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----------PSSADAHAALAVVFQTEME---PKLADEEYRKALAS-- 100 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------CChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH--
Confidence 4567889999999999999999998775542 2335566778999988764 45555555554332
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHH
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Arr 163 (419)
.++. ...+..-|.+.+..|++++|...+..+-. ...++.....+..+|
T Consensus 101 ---~~~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la-------- 148 (252)
T 2ho1_A 101 ---DSRN-----------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLG-------- 148 (252)
T ss_dssp ---CTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHH--------
T ss_pred ---CcCc-----------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHH--------
Confidence 1110 12334446667788999999999988755 111222222222111
Q ss_pred HHHHhCCCHHHHHHHHH
Q 014748 164 ALRICSQDVGSAIDFLV 180 (419)
Q Consensus 164 ALrat~gdve~Av~~L~ 180 (419)
-+....|+.+.|+.++.
T Consensus 149 ~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 149 LVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 12234678999998874
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.89 E-value=0.25 Score=37.19 Aligned_cols=99 Identities=9% Similarity=-0.086 Sum_probs=65.7
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
-.++..|..++++++|++|+.++-.|=+.+. +.+....-+.+||+.+++ .++|..-+.++-+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~--- 69 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-----------EESKYWLMKGKALYNLER---YEEAVDCYNYVINV--- 69 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----------CCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHh---
Confidence 4578899999999999999999987755432 223345677889988875 44554444443321
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhcc-CChhHHHHHhHhHHhh
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHS-GQFDKARNALTSAQAK 137 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~-g~~~eA~~~L~~a~~~ 137 (419)
++. ......+..-|.+.+.. |++++|...+..+-..
T Consensus 70 ----~~~-------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 70 ----IED-------------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp ----SCC-------------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ----Ccc-------------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 111 01112334457778899 9999999999877543
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=93.89 E-value=0.36 Score=41.79 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=70.4
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccc-----hhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDN-----GPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN-----~a~L~lDivWcy~~l~~~~~l~dA~~rL~~a 78 (419)
+..+..+|..++++++|++|+.++..|=+.+..........++. .+.+..-+..||+.+++ ..+|...+.+|
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a 114 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD---YPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 45678999999999999999999988876554432100000000 12455678888988765 45565555555
Q ss_pred HHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 79 REGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 79 e~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
-+. ++ . ..+.+..-|.+.+..|++++|...+..+-..
T Consensus 115 l~~-------~p----------~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 115 LKI-------DK----------N-----NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHH-------ST----------T-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHh-------Cc----------c-----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 443 11 0 1223444577788999999999999887654
No 139
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.87 E-value=0.77 Score=38.97 Aligned_cols=129 Identities=14% Similarity=0.019 Sum_probs=80.3
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
..++..|..+++.++|++|+.++..+=+.+. +.+....-+.+||+.+++ .++|...+.++-+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~-- 72 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDP-----------KNELAWLVRAEIYQYLKV---NDKAQESFRQALSIK-- 72 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-----------cchHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhC--
Confidence 4567889999999999999999988766543 224456678899998765 456665555554321
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhcc-CChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHH
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHS-GQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~-g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Arr 163 (419)
. +. ...+..-|.+.+.. |++++|...+..+-. . ..++.....+..+|
T Consensus 73 --~-~~-----------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~---~~~~~~~~~~~~l~-------- 120 (225)
T 2vq2_A 73 --P-DS-----------------AEINNNYGWFLCGRLNRPAESMAYFDKALA-D---PTYPTPYIANLNKG-------- 120 (225)
T ss_dssp --T-TC-----------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S---TTCSCHHHHHHHHH--------
T ss_pred --C-CC-----------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C---cCCcchHHHHHHHH--------
Confidence 1 11 11223346667788 999999999988765 1 11121111121111
Q ss_pred HHHHhCCCHHHHHHHHHh
Q 014748 164 ALRICSQDVGSAIDFLVE 181 (419)
Q Consensus 164 ALrat~gdve~Av~~L~e 181 (419)
-+....|+.+.|+.++..
T Consensus 121 ~~~~~~~~~~~A~~~~~~ 138 (225)
T 2vq2_A 121 ICSAKQGQFGLAEAYLKR 138 (225)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 122346789999988743
No 140
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.86 E-value=0.49 Score=37.69 Aligned_cols=102 Identities=22% Similarity=0.177 Sum_probs=69.4
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..+...|..++++++|++|+.++..+=+.... . ...+.....+.+||+.+++ ..+|..-+.++-+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~-----~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~-- 94 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---P-----QDQAVLHRNRAACHLKLED---YDKAETEASKAIEK-- 94 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---H-----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---c-----hHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhh--
Confidence 346788999999999999999999877443221 0 1146777889999998875 45555554444332
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
+..+ ...+...|.+.+..|++++|...+..+-...
T Consensus 95 --~~~~------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 95 --DGGD------------------VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp --TSCC------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred --CccC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 1111 2334456777889999999999998876543
No 141
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.18 Score=49.07 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=67.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.+..+|..+++.|+|++|+.++-.+=+.. | | +.....+..||+.+++ ...|..-+.++-+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p-------~-~~~~~~la~~~~~~g~---~~~A~~~~~~al~~-- 68 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK----E-------D-PVFYSNLSACYVSVGD---LKKVVEMSTKALEL-- 68 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----C-------C-HHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----c-------c-HHHHHhHHHHHHHHhh---HHHHHHHHHHHhcc--
Confidence 4568899999999999999999998886653 1 1 4566778999999876 45555555544331
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~ 136 (419)
.++ ....++..|.+.+..|++++|...+..+-.
T Consensus 69 ---~p~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 101 (514)
T 2gw1_A 69 ---KPD-----------------YSKVLLRRASANEGLGKFADAMFDLSVLSL 101 (514)
T ss_dssp ---CSC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---ChH-----------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 111 113344457778899999999999887644
No 142
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=93.70 E-value=2.1 Score=40.26 Aligned_cols=112 Identities=9% Similarity=-0.038 Sum_probs=78.1
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.+.-+|..++.+++|++|+.++-.|=+.+..-++ .-++....-+.++|+...+ ++.|...+.++.....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 84 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF------YSRIVATSVLGEVLHCKGE---LTRSLALMQQTEQMAR 84 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH------HHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch------hHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHH
Confidence 344566889999999999999998887665432111 1234456677889988764 6888888888888776
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhcc
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~ 140 (419)
+ .| +. ..........|.+.+..|++++|..++..+-....+
T Consensus 85 ~-~~-~~--------------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 125 (373)
T 1hz4_A 85 Q-HD-VW--------------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 125 (373)
T ss_dssp H-TT-CH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred h-cC-cH--------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5 33 21 111233345577788999999999999888665544
No 143
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.59 E-value=1.6 Score=40.57 Aligned_cols=142 Identities=14% Similarity=0.016 Sum_probs=86.5
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 014748 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (419)
Q Consensus 7 lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (419)
|..-|..+...++|++|+.++..|=+.+...+. ..+.+..-..+.+||..+++ .+.|...+.+|-+.+.+ .
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~-~ 110 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGN-----EDEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTH-R 110 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH-c
Confidence 334466777788899999888888666654432 12345566788999988764 67888888888887654 3
Q ss_pred CCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhcc-CChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH
Q 014748 87 GKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHS-GQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL 165 (419)
Q Consensus 87 G~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~-g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrAL 165 (419)
| ++.... ..+.--|.+.... |++++|..++.+|-..++...-.......+..+| -+
T Consensus 111 g-~~~~~a--------------~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg--------~~ 167 (292)
T 1qqe_A 111 G-QFRRGA--------------NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA--------DL 167 (292)
T ss_dssp T-CHHHHH--------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HH
T ss_pred C-CHHHHH--------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH--------HH
Confidence 4 322211 1112234555565 9999999999988665543211111111122111 13
Q ss_pred HHhCCCHHHHHHHHH
Q 014748 166 RICSQDVGSAIDFLV 180 (419)
Q Consensus 166 rat~gdve~Av~~L~ 180 (419)
....|+.+.|+.++.
T Consensus 168 ~~~~g~~~~A~~~~~ 182 (292)
T 1qqe_A 168 KALDGQYIEASDIYS 182 (292)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 334688999998874
No 144
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=93.48 E-value=0.076 Score=38.60 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=33.8
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHhhcC
Q 014748 277 DAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGE 314 (419)
Q Consensus 277 ~~~I~~L~~M--GF~~~~A~~AL~~~~nN~e~A~d~Ll~~ 314 (419)
++.+..|.+| .-+...++.+|+.++||+++|++.|++-
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4567888888 7788999999999999999999999975
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.47 E-value=0.32 Score=46.78 Aligned_cols=110 Identities=17% Similarity=0.122 Sum_probs=74.1
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCCh----hhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDP----KVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~----~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
+..++..|..++++++|++|+.++-.|=+....+.. .-.+.-...+.+.+.+.+||+.+++ ..+|...+.+|-
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~al 223 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA---FSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 456789999999999999999999988776655421 1111112235677889999999875 445555544443
Q ss_pred HHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 80 EGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 80 ~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
+. ++. . ...+...|.+.+..|++++|...+.++-+..
T Consensus 224 ~~-------~p~----------~-----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 224 EL-------DSN----------N-----EKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HH-------CTT----------C-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Hh-------CCC----------c-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 32 111 1 1223345778889999999999999886644
No 146
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.46 E-value=0.43 Score=45.84 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=66.3
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
-.+...|..+++.++|++|+.++-.+=+. .-+.+.....+.+||+.+++ ..+|..-+.++-+.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----------~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~--- 89 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDG-----------DPDNYIAYYRRATVFLAMGK---SKAALPDLTKVIQL--- 89 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---
Confidence 35678899999999999999999877543 22336677788999999875 45555555544332
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHh
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~ 136 (419)
+++. ...+..-|.+.+..|++++|...+..+-.
T Consensus 90 --~p~~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 90 --KMDF-----------------TAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp --CTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --CCCc-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1111 12333446667788999999999988754
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.27 E-value=1.5 Score=40.45 Aligned_cols=109 Identities=10% Similarity=0.036 Sum_probs=70.4
Q ss_pred hHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCC
Q 014748 10 NAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKD 89 (419)
Q Consensus 10 k~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~ 89 (419)
-|-..+.+++|++|+.++-.|=+.+..-+.. -..+.....|..||+.+++ .+.|...+.+|-+.++...+ +
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-----~~~~~~~~~lg~~y~~~g~---~~~A~~~~~~al~~~~~~~~-~ 191 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDV-----YQNLYIENAIANIYAENGY---LKKGIDLFEQILKQLEALHD-N 191 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT-----THHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSSC-C
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccH-----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhccc-c
Confidence 3444555667777777776666543322211 0123345677888888775 67888888888776655423 2
Q ss_pred hHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccC
Q 014748 90 SSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQL 141 (419)
Q Consensus 90 ~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l 141 (419)
.....+.+.--|.+.+..|++++|..++.++-+...+.
T Consensus 192 --------------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 192 --------------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred --------------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 22445556667888889999999999999886655443
No 148
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.25 E-value=1.9 Score=38.09 Aligned_cols=129 Identities=17% Similarity=0.112 Sum_probs=81.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.+..+|..+++.++|++|+.++-.+=+.... .+-...-+.+||+.+++ ..+| ...|.+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-----------~~~~~~~l~~~~~~~~~---~~~A-------~~~~~~a 63 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-----------SPYIYNRRAVCYYELAK---YDLA-------QKDIETY 63 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-----------CSTTHHHHHHHHHHTTC---HHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----------cHHHHHHHHHHHHHHhh---HHHH-------HHHHHHH
Confidence 4678999999999999999999887554332 23345567889998875 3444 4444443
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHH-
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA- 164 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrA- 164 (419)
.- . + ....+....+..-|.+.+..|++++|...+.++-...+.. ... -...|
T Consensus 64 ~~-~--------~---~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~------------~~~l~~ 116 (272)
T 3u4t_A 64 FS-K--------V---NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---LDM------------YGQIGS 116 (272)
T ss_dssp HT-T--------S---CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THH------------HHHHHH
T ss_pred Hh-c--------c---CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHH------------HHHHHH
Confidence 22 0 0 1111233445566777889999999999999886643321 111 11222
Q ss_pred HHHhCCCHHHHHHHHHhc
Q 014748 165 LRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 165 Lrat~gdve~Av~~L~e~ 182 (419)
+....|+.+.|+.++..-
T Consensus 117 ~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHHTTCHHHHHHHHGGG
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 233468899999987443
No 149
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=93.19 E-value=3.1 Score=37.47 Aligned_cols=132 Identities=13% Similarity=0.061 Sum_probs=67.2
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 014748 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (419)
Q Consensus 7 lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (419)
+...|..+++.++|++|+.++-.|=+.+..+ +....-+.+||+.+++ . ..|...|+++.
T Consensus 128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~~l~~~~~~~~~---~-------~~A~~~~~~al 186 (330)
T 3hym_B 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGC-----------HLPMLYIGLEYGLTNN---S-------KLAERFFSQAL 186 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-----------SHHHHHHHHHHHHTTC---H-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcccc-----------HHHHHHHHHHHHHHhh---H-------HHHHHHHHHHH
Confidence 4455666666666666666666555444321 1112226666666553 2 33444444433
Q ss_pred CCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH-
Q 014748 87 GKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL- 165 (419)
Q Consensus 87 G~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrAL- 165 (419)
-.++. ....+..-|.+.+..|++++|...+..+-.......-... .-.+...-...|.
T Consensus 187 ~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~ 245 (330)
T 3hym_B 187 SIAPE---------------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHV 245 (330)
T ss_dssp TTCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHH
T ss_pred HhCCC---------------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHH
Confidence 32221 1133344566677888888888888887665533211100 0011222222232
Q ss_pred HHhCCCHHHHHHHHH
Q 014748 166 RICSQDVGSAIDFLV 180 (419)
Q Consensus 166 rat~gdve~Av~~L~ 180 (419)
....|+.+.|+.++.
T Consensus 246 ~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 246 CRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHH
Confidence 234578888888773
No 150
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.16 E-value=0.92 Score=41.36 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=66.0
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.+...|+.+++.++|++|+.++-.+=+... +.+....-+.+||+.+++ ...|..-+.++-+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---- 66 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDP-----------DNYIAYYRRATVFLAMGK---SKAALPDLTKVIAL---- 66 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----------ccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHh----
Confidence 467899999999999999999987755322 234566788999999876 34444444444322
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
.++. ...+..-|.+.+..|++++|...+..+-..
T Consensus 67 -~~~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 100 (359)
T 3ieg_A 67 -KMDF-----------------TAARLQRGHLLLKQGKLDEAEDDFKKVLKS 100 (359)
T ss_dssp -CTTC-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS
T ss_pred -CCCc-----------------chHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 1111 123445577778899999999999887543
No 151
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.08 E-value=0.29 Score=50.00 Aligned_cols=108 Identities=13% Similarity=-0.007 Sum_probs=82.7
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhh----hhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 7 LHANAKSLIKRHMYKDALEVLTMG----EEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 7 lhek~r~~~~~~~y~~aL~~ll~a----de~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
..++++..-+.++|++|+.++..| .+.|..=.+.++.+.+|.|.+. . +.....+|.....++-..+
T Consensus 301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y-------~---~~g~~~eA~~~~~~aL~i~ 370 (433)
T 3qww_A 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVC-------L---YMQDWEGALKYGQKIIKPY 370 (433)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH-------H---HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHH-------H---hhcCHHHHHHHHHHHHHHH
Confidence 345566555667899999987665 4567788889999999988764 2 3467899999999999999
Q ss_pred HHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 83 ~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
++.||+++--+.... .. -|.+.+++|++++|..++.+|-+-+
T Consensus 371 ~~~lG~~Hp~~a~~l----------~n----La~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 371 SKHYPVYSLNVASMW----------LK----LGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHSCSSCHHHHHHH----------HH----HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHH----------HH----HHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999998887663321 22 2455679999999999999886544
No 152
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=93.07 E-value=0.07 Score=39.17 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCHHHH--HHHHHHcCCCHHHHHHHhh
Q 014748 277 DAKIEQLVAMGFERPRV--IEACRAGGDDIHQIMLQLL 312 (419)
Q Consensus 277 ~~~I~~L~~MGF~~~~A--~~AL~~~~nN~e~A~d~Ll 312 (419)
.++|.++.+|||+.+-. .+.|...++|+.+|++.|-
T Consensus 11 ~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 46799999999999865 4789999999999999884
No 153
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=92.94 E-value=1.4 Score=40.11 Aligned_cols=137 Identities=12% Similarity=-0.008 Sum_probs=81.3
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.+..+|..+++.++|++|+.++-.+=+.+. +.+-...-+.+||+.+++ .+.|. ..|++.
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---~~~A~-------~~~~~~ 180 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCV-----------WDAELRELRAECFIKEGE---PRKAI-------SDLKAA 180 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------CchHHHHHHHHHHHHCCC---HHHHH-------HHHHHH
Confidence 346679999999999999999988755432 335567789999998875 34444 444443
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL 165 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrAL 165 (419)
.-.++. . ...+..-|.+.+..|++++|...+..+-...+.. ......+..++--......|.
T Consensus 181 ~~~~~~---------~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 181 SKLKSD---------N------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HTTCSC---------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCC---------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---hHHHHHHHHHHHHHHHHHHHH
Confidence 321111 1 1233445677778899999999998886544321 222222211110011111122
Q ss_pred -HHhCCCHHHHHHHHHh
Q 014748 166 -RICSQDVGSAIDFLVE 181 (419)
Q Consensus 166 -rat~gdve~Av~~L~e 181 (419)
....|+.+.|+.++..
T Consensus 243 ~~~~~~~~~~A~~~~~~ 259 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYES 259 (359)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 2346788888887743
No 154
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=92.91 E-value=0.88 Score=39.35 Aligned_cols=128 Identities=13% Similarity=0.020 Sum_probs=64.1
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
.++.++.+|..+++.++|++|+.++-.+=+.. .+.+....-+.+||+.+++ ...|...+.++-+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----------~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-----------KEDAIPYINFANLLSSVNE---LERALAFYDKALELD 87 (243)
T ss_dssp --------------------CCTTHHHHHTTC-----------TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----------cccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC
Confidence 46778999999999999999999988775422 1224556678899998765 455555555443321
Q ss_pred HHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHH
Q 014748 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAK 162 (419)
Q Consensus 83 ~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Ar 162 (419)
++ ....+..-|.+.+..|++++|...+.++-...+. +.... . .
T Consensus 88 -----~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~---~---------~ 130 (243)
T 2q7f_A 88 -----SS-----------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---NGDLF---Y---------M 130 (243)
T ss_dssp -----TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC---SHHHH---H---------H
T ss_pred -----Cc-----------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHH---H---------H
Confidence 11 1233344566777889999999999888664432 12211 1 1
Q ss_pred HH-HHHhCCCHHHHHHHHHh
Q 014748 163 RA-LRICSQDVGSAIDFLVE 181 (419)
Q Consensus 163 rA-Lrat~gdve~Av~~L~e 181 (419)
.| +....|+.+.|+.++..
T Consensus 131 ~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 131 LGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 12 22346788888888743
No 155
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=92.91 E-value=2.6 Score=36.81 Aligned_cols=125 Identities=11% Similarity=-0.073 Sum_probs=79.7
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.+...|..+++.++|++|+.++..+=+.+. +.+.....+.+||+.+++ . ..|...|++.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~la~~~~~~g~---~-------~~A~~~~~~~ 131 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDS-----------RNARVLNNYGGFLYEQKR---Y-------EEAYQRLLEA 131 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---H-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----------CcHHHHHHHHHHHHHHhH---H-------HHHHHHHHHH
Confidence 456778999999999999999988866532 234566778999988765 3 3445555554
Q ss_pred hC--CChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHH
Q 014748 86 HG--KDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (419)
Q Consensus 86 yG--~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Arr 163 (419)
.- .++. ....+..-|.+.+..|++++|...+..+-...+. +.... ...
T Consensus 132 ~~~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~------------~~l 181 (252)
T 2ho1_A 132 SQDTLYPE---------------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN---QPSVA------------LEM 181 (252)
T ss_dssp TTCTTCTT---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHH------------HHH
T ss_pred HhCccCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc---cHHHH------------HHH
Confidence 43 2221 1123334566778899999999999887654322 11111 112
Q ss_pred H-HHHhCCCHHHHHHHHHh
Q 014748 164 A-LRICSQDVGSAIDFLVE 181 (419)
Q Consensus 164 A-Lrat~gdve~Av~~L~e 181 (419)
| +....|+.+.|+.++..
T Consensus 182 a~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 2 22346789999988743
No 156
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.85 E-value=0.12 Score=39.99 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=36.4
Q ss_pred chHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 275 AADAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 275 ~d~~~I~~L~~M--GF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
.-++.+.+|.+| .+++..++..|++|+||++.|++-|+.-..+
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLE 61 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence 456789999999 4578899999999999999999999875433
No 157
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=92.79 E-value=0.02 Score=53.78 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcC
Q 014748 277 DAKIEQLVAMGFERPRVIEACRAGGDDIHQIMLQLLGE 314 (419)
Q Consensus 277 ~~~I~~L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~ 314 (419)
.+.|.++++|||++..++.||..++.|+++|++.||+.
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 57899999999999999999999999999999999863
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.68 E-value=0.31 Score=39.60 Aligned_cols=95 Identities=9% Similarity=-0.122 Sum_probs=62.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++++|..+++.++|++|+.++-.|=+.... .+-...-+..||+.+++ ...|...|++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----------~~~a~~~lg~~~~~~g~----------~~~A~~~~~~a 77 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-----------REEAWRSLGLTQAENEK----------DGLAIIALNHA 77 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------CHHHHHHHHHHHHHTTC----------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------CHHHHHHHHHHHHHcCC----------HHHHHHHHHHH
Confidence 4688999999999999999998776543322 24455678888988765 34455555544
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHh
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~ 136 (419)
.--++. .++ .+..-|.+.+..|++++|...+..+-.
T Consensus 78 l~l~P~---------~~~------~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 78 RMLDPK---------DIA------VHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHCTT---------CHH------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCC---------CHH------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 332221 111 223346667788999999998887644
No 159
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=92.52 E-value=1.1 Score=41.82 Aligned_cols=28 Identities=4% Similarity=-0.135 Sum_probs=19.8
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhh
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEA 33 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~ 33 (419)
.++.+|..+++.++|++|+.++-.|=+.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~ 94 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQ 94 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3667777777777777777777666443
No 160
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=92.37 E-value=1.8 Score=39.94 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=65.6
Q ss_pred hHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccch--hhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhC
Q 014748 10 NAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNG--PLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHG 87 (419)
Q Consensus 10 k~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~--a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG 87 (419)
.|.....+++|++|+.++..|=+.+... .|.+ +.....|.++|+.++ ..+.|...+.+|-+.++...+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~lg~~y~~~~---~~~~A~~~~~kal~~~~~~~~ 190 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTG-------IDVYQNLYIENAIANIYAENG---YLKKGIDLFEQILKQLEALHD 190 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCS-------SCTTHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcCc
Confidence 4444455555666655555544333221 2222 445567889998865 467888888888877765543
Q ss_pred CChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 88 KDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 88 ~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
+.. +....+.--|.+.+..|++++|..++.++-...
T Consensus 191 -~~~--------------~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 191 -NEE--------------FDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp -CHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -ccc--------------chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 211 112444556888899999999999999886544
No 161
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.29 E-value=1.3 Score=44.81 Aligned_cols=131 Identities=13% Similarity=0.053 Sum_probs=91.2
Q ss_pred HhHHHHHHhhchHHHHHHHHhh----hhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 9 ANAKSLIKRHMYKDALEVLTMG----EEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 9 ek~r~~~~~~~y~~aL~~ll~a----de~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
..-..+-++++|++|+.++-.+ .+.|..-.+.++.+.+|.+.+. .. .....+|.....++-..+++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y-------~~---~g~~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDAC-------IN---LGLLEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHH-------HH---HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHH-------Hh---hccHHHHHHHHHHHHHhHHH
Confidence 3444566789999999988766 4567788899999999988764 33 35789999999999999999
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhcc-CCCCHHHHHHHHhCCCCHHHHHH
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ-LQVPDESLSLVMSMGFKEQDAKR 163 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~-l~vdee~l~~LmeMGF~~~~Arr 163 (419)
.||+++--+... +.. -|.+.+++|++++|..++.+|-+-+.. +-.|-..+..+.. ...+|+.
T Consensus 362 ~lg~~Hp~~a~~----------l~n----La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~---~l~~~~~ 424 (429)
T 3qwp_A 362 FFPGSHPVRGVQ----------VMK----VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL---LLEECDA 424 (429)
T ss_dssp HSCSSCHHHHHH----------HHH----HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH---HHHHHHH
T ss_pred HcCCCChHHHHH----------HHH----HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH---HHHHHHH
Confidence 999887655322 112 244566899999999999988665533 2344444444433 2344444
Q ss_pred HHH
Q 014748 164 ALR 166 (419)
Q Consensus 164 ALr 166 (419)
-|+
T Consensus 425 e~~ 427 (429)
T 3qwp_A 425 NIR 427 (429)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 162
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=92.12 E-value=0.64 Score=45.17 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=72.0
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 014748 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (419)
Q Consensus 7 lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (419)
+.--|....++|+|++|+.++-.|-+.+...... +.--++++.--.+.|||+.+++ ..+|...+.++.+..++..
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~--~~~~~~~~~~~nla~~y~~~g~---~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD--QAEIRSLVTWGNYAWVYYHMGR---LSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG--GCTTTTHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc--ccchHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhHhcc
Confidence 3445777888899999999999998876543221 1111334445578999998764 7889999999988877765
Q ss_pred CCC---hHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 87 GKD---SSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 87 G~~---~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
+.. ...+..-+|. ..+.+.++++++|...+.++-+.
T Consensus 129 ~~~~~~~~~~~~~~g~---------------~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 129 SPYRIESPELDCEEGW---------------TRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp CSSCCCCHHHHHHHHH---------------HHHHHCTTHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHH---------------HHHHHccccHHHHHHHHHHHHHh
Confidence 421 1222221111 12234556788888888877553
No 163
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=92.05 E-value=1.1 Score=41.25 Aligned_cols=114 Identities=12% Similarity=0.024 Sum_probs=80.5
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..++..|....+.++|++|+.++..|=+.+......- ...+.....+.|||+.+++ .+.|...+++|-+...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~----~~~~~~~~nlg~~y~~~~~---y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE----EFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc----cchHHHHHhHHHHHHHHhh---HHHHHHHHHHHHHHHH
Confidence 44678889999999999999999999987765543210 0012456788999998765 5778888777776653
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHH-HHHhHhHHhhhcc
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKA-RNALTSAQAKFFQ 140 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA-~~~L~~a~~~~~~ 140 (419)
. .+ + ......++...|.+.+..|++++| ..++.+|-..+..
T Consensus 228 ~-~~-~--------------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 228 R-IN-S--------------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp H-TT-B--------------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred h-cC-c--------------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 2 22 1 112344566788889999999999 7888888665543
No 164
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=91.97 E-value=0.23 Score=37.90 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=61.8
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.++..|..+++.++|++|+.++..|=+... +.+.....+..||+.+++ ...|...|+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~g~----------~~~A~~~~~ 62 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-----------QNPVGYSNKAMALIKLGE----------YTQAIQMCQ 62 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHhcC----------HHHHHHHHH
Confidence 34678899999999999999999987755422 235556788999999875 344555555
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTS 133 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~ 133 (419)
++.--++. ......+...+...|.+.+..|+++.|...+..
T Consensus 63 ~al~~~p~---------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 63 QGLRYTST---------AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHTSCSS---------TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHhCCC---------ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 54432221 112223344444455555566666666554443
No 165
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=91.86 E-value=0.81 Score=39.24 Aligned_cols=114 Identities=9% Similarity=-0.078 Sum_probs=71.8
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
..++..|..+++.++|++|+.++..|=+.. .+.+.....+.+||+.+++ ...|..-+.+|-+....
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRD-----------KHLAVAYFQRGMLYYQTEK---YDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------ccchHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCCC
Confidence 356788999999999999999998776543 2345566788999998765 45565555555432211
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
... -.....|..... -....+..-|.+.+..|++++|...+..+-...
T Consensus 104 ~~~----~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 104 NQL----IDYKILGLQFKL--FACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CSE----EECGGGTBCCEE--EHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccH----HHHHHhccccCc--cchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 000 000000100000 113445566888889999999999998876544
No 166
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=91.75 E-value=1.4 Score=38.94 Aligned_cols=98 Identities=12% Similarity=-0.057 Sum_probs=65.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
-.++..|+.+++.++|++|+.++..|=+.+. +.+.....+.+||+.+++ .++|..-+.++-+..
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~-- 107 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRP-----------DMPEVFNYLGIYLTQAGN---FDAAYEAFDSVLELD-- 107 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-----------CcHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcC--
Confidence 3567789999999999999998877765432 234455677888888764 455555555444321
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
+ .. ...+...|.+.+..|++++|...+..+-...
T Consensus 108 -----~---------~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 108 -----P---------TY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp -----T---------TC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----c---------cc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1 01 1234445677778899999999998876543
No 167
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.71 E-value=3.5 Score=38.14 Aligned_cols=146 Identities=13% Similarity=0.039 Sum_probs=91.6
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..++..|..+.+.++|++|+.++-.|=+.+...+. ....+.....|.++|... +...+.|...+.+|-+.+.
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~~~a~~~~~lg~~~~~~--lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----FRRGANFKFELGEILEND--LHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999887754432 112244455677888762 2456788888888877665
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHH--H
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQD--A 161 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~--A 161 (419)
.. | +.. .....+.--|.+.+..|++++|..++..+-...+....- .|.... .
T Consensus 150 ~~-~-~~~--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~ 203 (292)
T 1qqe_A 150 QD-Q-SVA--------------LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS----------QWSLKDYFL 203 (292)
T ss_dssp HT-T-CHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT----------GGGHHHHHH
T ss_pred hC-C-ChH--------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc----------cHHHHHHHH
Confidence 32 2 110 011122233677778999999999998886654332110 011111 1
Q ss_pred HHH-HHHhCCCHHHHHHHHHhc
Q 014748 162 KRA-LRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 162 rrA-Lrat~gdve~Av~~L~e~ 182 (419)
..| +....|+.+.|+.++..-
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 122 233468999999987543
No 168
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=91.56 E-value=4.7 Score=36.23 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=20.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhh
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGE 31 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ad 31 (419)
.+..+|+.++.+++|++|+.++-.+=
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l 49 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVM 49 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678888999999999998876653
No 169
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=91.48 E-value=3 Score=41.60 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=35.1
Q ss_pred HhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHH-HHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 014748 113 LEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDES-LSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180 (419)
Q Consensus 113 Lqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~-l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~ 180 (419)
.-+.+.+..|++++|...+..+-+..+....++.. ...+..+| -+....|+.+.|+.++.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~--------~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG--------HAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH--------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH--------HHHHHhcCHHHHHHHHH
Confidence 34555667788888888888776655544434432 22222221 12233678888888763
No 170
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.46 E-value=2.4 Score=39.24 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=19.0
Q ss_pred HHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 110 MELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 110 L~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
.+..-|.+.+..|++++|...+..+-..
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444566677778888888877776543
No 171
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=91.34 E-value=1.6 Score=32.95 Aligned_cols=98 Identities=20% Similarity=0.126 Sum_probs=65.7
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.++..|+.+++.++|++|+.++..+-+.+. +.+.....++.||+..++ ..+|..-+.++-+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~-- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------NNAEAWYNLGNAYYKQGD---YDEAIEYYQKALEL-- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----------CcHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHh--
Confidence 34678899999999999999999988865532 223455677888888764 45555555544322
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
...+ ...+..-+.+.+..|++++|...+..+-..
T Consensus 73 --~~~~------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 73 --DPNN------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp --CTTC------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCcc------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 1111 112233466677889999999998877553
No 172
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=91.33 E-value=1.5 Score=40.92 Aligned_cols=143 Identities=15% Similarity=0.025 Sum_probs=86.3
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 014748 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (419)
Q Consensus 7 lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (419)
|...|..+...++|++|+.++..|=+.+...+. ....+.....+..||..+++ .+.|...+.+|-..+.+ .
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~-~ 109 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-----LFHAAKAFEQAGMMLKDLQR---MPEAVQYIEKASVMYVE-N 109 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTC---GGGGHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHH-c
Confidence 344467788888899998888888776655432 12345566677888887765 56788888888777653 3
Q ss_pred CCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHH
Q 014748 87 GKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALR 166 (419)
Q Consensus 87 G~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrALr 166 (419)
| ++... ...+ .--|.+... |++++|..++.+|-+.+....-.......+..+| -+.
T Consensus 110 g-~~~~~----------a~~~----~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg--------~~~ 165 (307)
T 2ifu_A 110 G-TPDTA----------AMAL----DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS--------RLL 165 (307)
T ss_dssp T-CHHHH----------HHHH----HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHH
T ss_pred C-CHHHH----------HHHH----HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH--------HHH
Confidence 3 22221 1111 122444445 9999999999988765544321111122222211 123
Q ss_pred HhCCCHHHHHHHHHhc
Q 014748 167 ICSQDVGSAIDFLVEE 182 (419)
Q Consensus 167 at~gdve~Av~~L~e~ 182 (419)
...|+.+.|+.++..-
T Consensus 166 ~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 166 VRQQKFDEAAASLQKE 181 (307)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3468899999987433
No 173
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=91.27 E-value=1.3 Score=38.57 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=68.3
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++-.|..+++.++|++|+.++-.|=+.. -+.+-...-+.+||+.+++ ...|..-+.++-+.+
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----------p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~--- 106 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKN-----------YNLANAYIGKSAAYRDMKN---NQEYIATLTEGIKAV--- 106 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------CSHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----------cchHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHC---
Confidence 34558999999999999999988775332 2345566779999999875 345555554443321
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHh
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~ 136 (419)
..+.. + .......+...|.+.+..|++++|...+.++-.
T Consensus 107 -p~~~~-~----------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 107 -PGNAT-I----------EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp -TTCHH-H----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred -CCcHH-H----------HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 11111 1 111223566678888999999999999987744
No 174
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=91.24 E-value=0.9 Score=38.10 Aligned_cols=98 Identities=16% Similarity=0.072 Sum_probs=64.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++..|..+++.++|++|+.++-.|=+. --+.+....-+.+||+.+++ .++|...+.+|-..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL-----------DHYDSRFFLGLGACRQAMGQ---YDLAIHSYSYGAVM---- 84 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-----------CcccHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhc----
Confidence 4678999999999999999998765432 22334444567889988765 34454444444321
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhc
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 139 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~ 139 (419)
+ ...+ ..+..-|.+.+..|++++|...+..+-+..+
T Consensus 85 ---~---------p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 85 ---D---------IXEP------RFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp ---S---------TTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ---C---------CCCc------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 1 1111 1233447888899999999999988866543
No 175
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=91.03 E-value=0.041 Score=51.58 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
+++|..+++|||++..+++||..++.|++.|++.|+.+
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 67999999999999999999999999999999998754
No 176
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=90.91 E-value=2.3 Score=34.56 Aligned_cols=98 Identities=16% Similarity=0.083 Sum_probs=65.6
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
..+...|..+++.++|++|+.++-.+=+... +.+...+-+.+||+..++ ...|..-+.++-+..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~-- 106 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAP-----------DNVKVATVLGLTYVQVQK---YDLAVPLLIKVAEAN-- 106 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcC--
Confidence 3567788899999999999999888766532 123345667888888765 567777777766541
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
. +. ...+...|.+.+..|++++|...+..+-...
T Consensus 107 --~-~~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 107 --P-IN-----------------FNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp --T-TC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --c-Hh-----------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 1 11 1233444666677788888888887775544
No 177
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=90.89 E-value=0.24 Score=45.84 Aligned_cols=37 Identities=30% Similarity=0.294 Sum_probs=31.5
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 146 ESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 146 e~l~~LmeM-GF~~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
..|..|-++ |.+..+|++||..|+||++.|++||-..
T Consensus 5 ~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~k 42 (196)
T 1aip_C 5 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRER 42 (196)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 346666665 9999999999999999999999999653
No 178
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=90.74 E-value=0.8 Score=42.90 Aligned_cols=67 Identities=12% Similarity=-0.023 Sum_probs=41.4
Q ss_pred cchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChh
Q 014748 46 DNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFD 125 (419)
Q Consensus 46 DN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~ 125 (419)
.+.+....-+.+||+.+++ ...|...+.++-+. ++. . ...+..-|.+.+..|+++
T Consensus 96 p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~-------~p~---------~------~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENEN---EQAAIVALQRCLEL-------QPN---------N------LKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-------CTT---------C------HHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc-------CCC---------C------HHHHHHHHHHHHccccHH
Confidence 3445666778889988765 44555444444332 110 0 122333466777899999
Q ss_pred HHHHHhHhHHhh
Q 014748 126 KARNALTSAQAK 137 (419)
Q Consensus 126 eA~~~L~~a~~~ 137 (419)
+|...+..+-..
T Consensus 151 ~A~~~~~~al~~ 162 (365)
T 4eqf_A 151 DACEALKNWIKQ 162 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887553
No 179
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=90.74 E-value=0.24 Score=41.27 Aligned_cols=39 Identities=36% Similarity=0.599 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHh-CCCCHHHHHHHHHHhCCCHHHHHHHH
Q 014748 141 LQVPDESLSLVMS-MGFKEQDAKRALRICSQDVGSAIDFL 179 (419)
Q Consensus 141 l~vdee~l~~Lme-MGF~~~~ArrALrat~gdve~Av~~L 179 (419)
..++++.|..+|+ +|-++.+|++||+.|+||+-.|+-+|
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 5788999987775 79999999999999999999998775
No 180
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=90.69 E-value=0.24 Score=48.49 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=32.2
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 146 ESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 146 e~l~~LmeM-GF~~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
..|..|-++ |.+..+||+||..|+||++.|++||-+.
T Consensus 6 ~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~ 43 (291)
T 1xb2_B 6 ELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQ 43 (291)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 456777766 9999999999999999999999999653
No 181
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.51 E-value=0.72 Score=39.60 Aligned_cols=97 Identities=8% Similarity=-0.069 Sum_probs=66.8
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++..|..+++.|+|++|+.++-.|=+.. | +.+..-.-+..||+.+++ ...|..+|++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~----P-------~~~~~~~~lg~~~~~~g~----------~~~Ai~~~~~a 96 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD----F-------YNVDYIMGLAAIYQIKEQ----------FQQAADLYAVA 96 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-------TCHHHHHHHHHHHHHTTC----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C-------CCHHHHHHHHHHHHHHcc----------HHHHHHHHHHH
Confidence 57889999999999999999998764432 2 344555667888888865 44455555554
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
.--+| ..++ .+..-|.+.+..|++++|...+.++-+..
T Consensus 97 l~l~P---------~~~~------~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 97 FALGK---------NDYT------PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHSS---------SCCH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhCC---------CCcH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33111 2222 23345788889999999999999886643
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=90.32 E-value=1.3 Score=45.72 Aligned_cols=85 Identities=13% Similarity=0.052 Sum_probs=70.1
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhh----hhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGE----EAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ad----e~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~a 78 (419)
++-+++--|.....+|+|++|+.++..|= +.|..=.|.+..+.-|.|.+. +. ....++|...+.+|
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~-------~~---~G~~~eA~~~~~~A 419 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTN-------WH---AGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH-------HH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------HH---CCCHHHHHHHHHHH
Confidence 45667788899999999999999887764 456667778888888888763 33 45689999999999
Q ss_pred HHHHHHHhCCChHHHHHHH
Q 014748 79 REGIERAHGKDSSRVRLLQ 97 (419)
Q Consensus 79 e~~f~r~yG~~~~Rl~~lk 97 (419)
-..+++.||+++--+..++
T Consensus 420 l~i~~~~lG~~Hp~~~~~~ 438 (490)
T 3n71_A 420 YAILLVTHGPSHPITKDLE 438 (490)
T ss_dssp HHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHH
Confidence 9999999999998887766
No 183
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=90.27 E-value=0.63 Score=40.99 Aligned_cols=107 Identities=8% Similarity=-0.038 Sum_probs=62.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhh-----hhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVL-----EFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l-----~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
.++.+|..++++++|++|+.++-.|=+.......-+. ....-.+-+...+.+||+.+++ .+.|..-+.++-+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~ 82 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN---YDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence 3678999999999999999999876443221100000 0001112233347888887764 3444444433322
Q ss_pred HHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 81 GIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 81 ~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
. ++. . ...+..-|.+.+..|++++|...+.++-+.
T Consensus 83 ~-------~p~---------~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 83 K-------APN---------N------VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp H-------CTT---------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H-------CCC---------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1 111 1 123334477788999999999999887653
No 184
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=90.16 E-value=0.17 Score=49.48 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=32.2
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHHhh
Q 014748 217 IEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL 251 (419)
Q Consensus 217 ~~~l~~L~~M-GF~~~~A~~ALr~t~nnve~Al~~L 251 (419)
...|..|+++ |..--.||+||..++||++.|++||
T Consensus 5 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~L 40 (291)
T 1xb2_B 5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWL 40 (291)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568899999 8888999999999999999999998
No 185
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=90.14 E-value=2.2 Score=39.35 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=81.9
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
..+.--|....+.++|+.|+.++..|=+.|..-.. .-.+++.+...|.|||+.+++ .+.|...+.+|-+....
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~---y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999887754311 223556677889999999875 57888888887776554
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCC-hhHHHHHhHhHHhhhc
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQ-FDKARNALTSAQAKFF 139 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~-~~eA~~~L~~a~~~~~ 139 (419)
. + . ......++..-|.+.+..|+ +++|...+.+|-.-+.
T Consensus 229 ~-~-----------~----~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 229 I-N-----------S----MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp T-T-----------B----CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred c-C-----------c----HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3 2 1 11224566667888889995 5999999988866544
No 186
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=90.11 E-value=2.6 Score=40.26 Aligned_cols=138 Identities=12% Similarity=-0.020 Sum_probs=82.1
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++.+|..+++.++|++|+.++-.+-+.+. +.+....-++.||+.+++. ..|..-+.++-+..
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~--- 207 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCV-----------WDAELRELRAECFIKEGEP---RKAISDLKAASKLK--- 207 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTCG---GGGHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------CChHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhC---
Confidence 467889999999999999999988765432 2445667789999998875 34444444443221
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHH-
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA- 164 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrA- 164 (419)
..+ ...+..-|.+.+..|++++|...+..+-...+. +......+..++-......+|
T Consensus 208 -~~~------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 208 -NDN------------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp -CSC------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHHHHHH
Confidence 111 123344466777889999999999888653322 122222221111001111112
Q ss_pred HHHhCCCHHHHHHHHHhc
Q 014748 165 LRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 165 Lrat~gdve~Av~~L~e~ 182 (419)
+....|+.+.|+.++..-
T Consensus 266 ~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 122357888888877443
No 187
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=89.87 E-value=1.9 Score=40.09 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=69.4
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..+...|..+++.++|++|+.++..|=+... +.+.+...+..||+.+++ .. .|...|+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~~~~~~~---~~-------~A~~~~~ 62 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----------LVAVYYTNRALCYLKMQQ---PE-------QALADCR 62 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----------CCHHHHHHHHHHHHHTTC---HH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHHHHHhcC---HH-------HHHHHHH
Confidence 45688999999999999999999987755422 345666788899998874 34 4444555
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
+..--++.- ...+..-|.+.+..|++++|...+..+-...
T Consensus 63 ~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 63 RALELDGQS---------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHTTSCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 444322211 1234445888889999999999998886544
No 188
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=89.81 E-value=6.9 Score=32.87 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=77.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFML-RDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l-~~~~~l~dA~~rL~~ae~~f~r 84 (419)
.+...|..+++.++|++|+.++-.+=+.+. +.+.....+.+||+.+ ++ ..+|...+.++-+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~---- 105 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKP-----------DSAEINNNYGWFLCGRLNR---PAESMAYFDKALA---- 105 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----------CChHHHHHHHHHHHHhcCc---HHHHHHHHHHHHc----
Confidence 456678999999999999999987755432 2344556788888876 54 4555554444432
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHH
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA 164 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrA 164 (419)
.+.+ +. ....+..-|.+.+..|++++|...+..+-...+. +... +. ..|
T Consensus 106 -~~~~------------~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~---~~---------~la 154 (225)
T 2vq2_A 106 -DPTY------------PT---PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ---FPPA---FK---------ELA 154 (225)
T ss_dssp -STTC------------SC---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHH---HH---------HHH
T ss_pred -CcCC------------cc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CchH---HH---------HHH
Confidence 1111 11 1233344577778899999999999887554321 1111 11 122
Q ss_pred -HHHhCCCHHHHHHHHHh
Q 014748 165 -LRICSQDVGSAIDFLVE 181 (419)
Q Consensus 165 -Lrat~gdve~Av~~L~e 181 (419)
+....|+.+.|+.++..
T Consensus 155 ~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 12235789999988743
No 189
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=89.81 E-value=0.89 Score=41.06 Aligned_cols=97 Identities=12% Similarity=-0.087 Sum_probs=65.5
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++.+|+.+++.++|++|+.++-.+-+... +.+....-+.+||+.+++ ...|..-+.++-+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~--- 85 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-----------EREEAWRSLGLTQAENEK---DGLAIIALNHARMLD--- 85 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---
Confidence 467899999999999999999988765432 123334457889988765 455555555554321
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
++. ...+..-|.+.+..|++++|...+..+-...
T Consensus 86 --~~~-----------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 119 (327)
T 3cv0_A 86 --PKD-----------------IAVHAALAVSHTNEHNANAALASLRAWLLSQ 119 (327)
T ss_dssp --TTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred --cCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 111 1223344666778999999999998876543
No 190
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=89.71 E-value=1.6 Score=37.68 Aligned_cols=98 Identities=16% Similarity=-0.047 Sum_probs=67.4
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
..++..|..+++.++|++|+.++..+=+... +.+.....+.+||+.+++ ...|...+.++-+..
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~-- 121 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDS-----------SAATAYYGAGNVYVVKEM---YKEAKDMFEKALRAG-- 121 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------cchHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhC--
Confidence 3466789999999999999999987765432 345666778999998765 455555555543321
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
. +. ...+..-|.+.+..|++++|...+..+-...
T Consensus 122 --~-~~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 122 --M-EN-----------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp --C-CS-----------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred --C-CC-----------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1 11 1123445677788999999999998876543
No 191
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=89.54 E-value=1 Score=37.79 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=20.3
Q ss_pred HHHhHhhhhccCChhHHHHHhHhHH
Q 014748 111 ELLEGVAAYHSGQFDKARNALTSAQ 135 (419)
Q Consensus 111 ~LLqgvv~~~~g~~~eA~~~L~~a~ 135 (419)
+..-|.+.+..|++++|...+.+|=
T Consensus 144 ~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 144 YQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445788889999999999998873
No 192
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=89.37 E-value=0.33 Score=44.89 Aligned_cols=34 Identities=35% Similarity=0.271 Sum_probs=31.2
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHHhh
Q 014748 218 EKIKELVSI-GFEKELVAEALRRNENDSQKALDDL 251 (419)
Q Consensus 218 ~~l~~L~~M-GF~~~~A~~ALr~t~nnve~Al~~L 251 (419)
..|..|+++ |..--.|++||..++||++.|++||
T Consensus 5 ~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~L 39 (196)
T 1aip_C 5 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL 39 (196)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 468889988 8888999999999999999999998
No 193
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=89.36 E-value=2.3 Score=38.09 Aligned_cols=118 Identities=12% Similarity=0.063 Sum_probs=74.2
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhC-----CCCCHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLR-----DISWLSEAGIRLRKA 78 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~-----~~~~l~dA~~rL~~a 78 (419)
.-.++..|...++.++|++|+..+-.+=+.|..- .+++....-+.+||+.+. +....++|..-+.++
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~ 123 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQID--------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF 123 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 3457788999999999999999998776655332 133445566788998843 345556666666555
Q ss_pred HHHHHHHhCCChH------HHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhcc
Q 014748 79 REGIERAHGKDSS------RVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (419)
Q Consensus 79 e~~f~r~yG~~~~------Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~ 140 (419)
-+.+ ..+.. ++..+.+. +-.-++.-|.+.+..|++++|...+..+-..++.
T Consensus 124 l~~~----p~~~~~~~a~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 124 IDRY----PNHELVDDATQKIRELRAK-------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp HHHC----TTCTTHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHC----cCchhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 4432 21111 11111111 0111345578888999999999999988776654
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.25 E-value=3.4 Score=39.43 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=80.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++--|+..+..|+|.+|+.++-.+-..+..-+.+- ..+-..+-+..+|+.++| .+.|..-+.++.......
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP-----SLVDVHLLESKVYHKLRN---LAKSKASLTAARTAANSI 208 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST-----HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch-----hHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHhhcC
Confidence 345668999999999999999998877666544331 234456788899998886 467777777777665544
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhcc
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~ 140 (419)
+. + ..+..+++..-|.+..+.|++.+|..++..+-.-+..
T Consensus 209 ~~--~-------------~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~ 248 (434)
T 4b4t_Q 209 YC--P-------------TQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHN 248 (434)
T ss_dssp CC--C-------------HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred CC--c-------------hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 33 1 2234466777888999999999999988877554433
No 195
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=89.13 E-value=1.2 Score=36.09 Aligned_cols=102 Identities=12% Similarity=-0.019 Sum_probs=64.8
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++..|..+++.++|++|+.++..|=+.+. +.+.....+.+||+.+++ .+.|...+.++-..
T Consensus 49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~---- 110 (166)
T 1a17_A 49 YYGNRSLAYLRTECYGYALGDATRAIELDK-----------KYIKGYYRRAASNMALGK---FRAALRDYETVVKV---- 110 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------ccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHh----
Confidence 466789999999999999999988776542 234456678889998765 45555555544332
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccC
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQL 141 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l 141 (419)
+. +.... ...+-.+...+..|++++|...+..+...+..+
T Consensus 111 ~p-~~~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (166)
T 1a17_A 111 KP-HDKDA---------------KMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150 (166)
T ss_dssp ST-TCHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CC-CCHHH---------------HHHHHHHHHHHHHHHHHHHHHcccchHHHhccc
Confidence 11 11111 111222333445688899999988877666544
No 196
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=88.84 E-value=2.3 Score=32.31 Aligned_cols=95 Identities=21% Similarity=0.132 Sum_probs=60.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++..|..+++.++|++|+.++-.+-+... +.+.....+.+||+..++ ...|...+.++-+.
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~---- 98 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------RSAEAWYNLGNAYYKQGD---YDEAIEYYQKALEL---- 98 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-----------CchHHHHHHHHHHHHhcC---HHHHHHHHHHHHHh----
Confidence 355678889999999999999887755432 223345567888887664 45555555544332
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHh
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~ 136 (419)
.++. ......-+.+.+..|++++|...+..+-.
T Consensus 99 -~~~~-----------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 99 -DPRS-----------------AEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp -CTTC-----------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -CCCC-----------------hHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 1111 11223345667788999999998887644
No 197
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=88.64 E-value=7.9 Score=33.95 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=20.2
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhh
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGE 31 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ad 31 (419)
.++..|..++++++|++|+.++-.|=
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al 32 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERAL 32 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888876553
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=88.55 E-value=3.4 Score=39.85 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=47.3
Q ss_pred HHHHH--HhCCCCCHHHHHHHHHHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHh
Q 014748 56 VWCYF--MLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTS 133 (419)
Q Consensus 56 vWcy~--~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~ 133 (419)
+|+|+ .+..+.....|.+.+.++- .|...|.. ..--.+-+|.+..+.|+.++|..+|..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~-----------------~g~~~P~~--~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEAN-----------------DSPAGEAC--ARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-----------------TSTTTTTT--HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHh-----------------cCCCCccc--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44443 4556666677766666552 23221221 222334467788899999999999988
Q ss_pred HHhhhccCCCCHHHHHHHHhCCCC
Q 014748 134 AQAKFFQLQVPDESLSLVMSMGFK 157 (419)
Q Consensus 134 a~~~~~~l~vdee~l~~LmeMGF~ 157 (419)
+.+..+. ++.-..|..+.|.
T Consensus 234 a~a~~P~----~~~~~aL~~~~~~ 253 (282)
T 4f3v_A 234 LQTTHPE----PKVAAALKDPSYR 253 (282)
T ss_dssp HHHHSCC----HHHHHHHHCTTCC
T ss_pred HHhcCCc----HHHHHHHhCCCCC
Confidence 8775542 4455566666664
No 199
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=88.32 E-value=0.64 Score=32.34 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=31.8
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 014748 278 AKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPG 316 (419)
Q Consensus 278 ~~I~~L~~M-GF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~ 316 (419)
+.|.+.++. |.++..|+.-|..+++|++.|++-.|.+++
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~~ 46 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGG 46 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 345555554 899999999999999999999998887653
No 200
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=88.30 E-value=0.7 Score=45.41 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=63.2
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+..++.+|..++++++|++|+.++-.|=+... +.+....-+.+||+.+++ ..+|..-+.++-+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~-- 88 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-----------NEPVFYSNISACYISTGD---LEKVIEFTTKALEI-- 88 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-----------CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc--
Confidence 45688999999999999999999987765432 345677889999999875 44444444444321
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhH
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALT 132 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~ 132 (419)
++. ....+...|.+.+..|++++|...+.
T Consensus 89 -----~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 89 -----KPD---------------HSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp -----CTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -----CCc---------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111 11233445667778899999998774
No 201
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=88.05 E-value=11 Score=37.41 Aligned_cols=56 Identities=18% Similarity=0.043 Sum_probs=34.9
Q ss_pred HHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 014748 111 ELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180 (419)
Q Consensus 111 ~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~ 180 (419)
+..-|.+.+..|++++|...+.++-+..+. +......|. -+....|+.+.|..++.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~-----------~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTN---DANVHTAIA-----------LVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSC---CHHHHHHHH-----------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHH-----------HHHHHhCCHHHHHHHHH
Confidence 334455667889999999999887654321 222222221 12344788999999874
No 202
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=88.04 E-value=3.3 Score=34.56 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=52.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWC-YFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWc-y~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
.++..|+.++..++|++|+.++-.|=+... +.+.....+..| |+..++.. ...|...+.++-+.
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~l~~~~~~~~-~~~A~~~~~~al~~--- 110 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRG-----------ENAELYAALATVLYYQASQHM-TAQTRAMIDKALAL--- 110 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-----------SCHHHHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHh---
Confidence 455667777777777777777766544332 123445566666 66665531 13343333333221
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
++ .. ...+..-|.+.+..|++++|...+..+-..
T Consensus 111 ----~p---------~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 111 ----DS---------NE------ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp ----CT---------TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----CC---------Cc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 11 00 112233456666777777777777666543
No 203
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=87.98 E-value=11 Score=33.56 Aligned_cols=120 Identities=16% Similarity=0.078 Sum_probs=72.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHH----hCCCCCHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFM----LRDISWLSEAGIRLRKAREG 81 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~----l~~~~~l~dA~~rL~~ae~~ 81 (419)
.++..|..+++.++|++|+.++..|=+ -+.+.....+..||+. .++ .+.|..-+.+|-+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~-------------~~~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD-------------LKENSGCFNLGVLYYQGQGVEKN---LKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHcCCCcCCC---HHHHHHHHHHHHHC
Confidence 567889999999999999999988765 1223345667888887 443 45555444444221
Q ss_pred HHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhc----cCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCC
Q 014748 82 IERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYH----SGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFK 157 (419)
Q Consensus 82 f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~----~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~ 157 (419)
| .++.- ..-|.+.+. .|++++|...+.++-+. |++
T Consensus 72 ----------------~--~~~a~------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----------------~~~ 110 (273)
T 1ouv_A 72 ----------------N--YSNGC------HLLGNLYYSGQGVSQNTNKALQYYSKACDL-----------------KYA 110 (273)
T ss_dssp ----------------T--CHHHH------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------------TCH
T ss_pred ----------------C--CHHHH------HHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----------------CCc
Confidence 1 12211 122334444 79999999999877442 222
Q ss_pred HHHHHHHHH-Hh----CCCHHHHHHHHHhc
Q 014748 158 EQDAKRALR-IC----SQDVGSAIDFLVEE 182 (419)
Q Consensus 158 ~~~ArrALr-at----~gdve~Av~~L~e~ 182 (419)
......|.. .. .++.+.|+.|+..-
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 222223322 22 57888888887543
No 204
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=87.72 E-value=1.5 Score=40.57 Aligned_cols=97 Identities=9% Similarity=-0.146 Sum_probs=66.0
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++..|+.+++.++|++|+.++-.+=+... +.+....-+.+||+.+++ ...|..-+.++-+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~--- 128 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-----------KHMEAWQYLGTTQAENEQ---ELLAISALRRCLELK--- 128 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHhcC---
Confidence 467899999999999999999988765432 234445567899998864 445555555443321
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
++ ....+..-|.+.+..|++++|...+..+-...
T Consensus 129 --~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 129 --PD-----------------NQTALMALAVSFTNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp --TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred --CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 11 11233445667778899999999998876543
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=87.18 E-value=2.1 Score=43.39 Aligned_cols=85 Identities=22% Similarity=0.113 Sum_probs=68.9
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhh----hhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEE----AFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade----~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~a 78 (419)
++-+++--|.....+|+|++|+.+...+=+ .|..=.|.+..+.-|.|.+..+ ....++|...+.+|
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~----------~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH----------QGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHH
Confidence 345677788899999999999999887754 4555667777777777776544 45689999999999
Q ss_pred HHHHHHHhCCChHHHHHHH
Q 014748 79 REGIERAHGKDSSRVRLLQ 97 (419)
Q Consensus 79 e~~f~r~yG~~~~Rl~~lk 97 (419)
-+.+++.||+++-.+..++
T Consensus 398 l~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 398 FDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHH
Confidence 9999999999998887765
No 206
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=87.13 E-value=0.39 Score=44.91 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=26.4
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHcCCC
Q 014748 275 AADAKIEQLVAMGFERPRVIEACRAGGDD 303 (419)
Q Consensus 275 ~d~~~I~~L~~MGF~~~~A~~AL~~~~nN 303 (419)
.+...|.+|++|||+++.|+.||..++.|
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~~ 196 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGVK 196 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCCS
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 35789999999999999999999999884
No 207
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.98 E-value=1.6 Score=34.35 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=33.9
Q ss_pred HHHHHHHHhC-CCCHHHH-HHHHHHcCCCHHHHHHHhhcCCCCCCc
Q 014748 277 DAKIEQLVAM-GFERPRV-IEACRAGGDDIHQIMLQLLGEPGSNPT 320 (419)
Q Consensus 277 ~~~I~~L~~M-GF~~~~A-~~AL~~~~nN~e~A~d~Ll~~~~~~~~ 320 (419)
+-.+++|.+. |....+. .+||++.+||+.+|+-+|.+.....+.
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~~P~ 70 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKTPP 70 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCCCS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccccCCC
Confidence 4467778776 8766655 469999999999999999887665433
No 208
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=86.90 E-value=8.3 Score=39.10 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=68.5
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
-.++..|..+++.++|++|+.++-.|=+... +.+-....+.+||+.+++ .++|...+.+|-+..
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~-- 87 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHP-----------GHPEAVARLGRVRWTQQR---HAEAAVLLQQASDAA-- 87 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC--
Confidence 3577889999999999999999988765432 234556778999998875 566666555554421
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
- +. ...+..-|.+.+..|++++|...+..+-+..
T Consensus 88 --p-~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (568)
T 2vsy_A 88 --P-EH-----------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121 (568)
T ss_dssp --T-TC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --C-CC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1 11 1233344677778999999999998886644
No 209
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=86.89 E-value=3.1 Score=36.69 Aligned_cols=31 Identities=13% Similarity=-0.164 Sum_probs=23.9
Q ss_pred HHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 108 LRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 108 lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
...+..-|.+.+..|++++|...+.++-+..
T Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 221 IEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455556777888999999999998886644
No 210
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=86.74 E-value=0.69 Score=44.56 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=65.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccC-----Chhhhhhccc-hhhhhhhHHHHHHHhCCCCCHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLC-----DPKVLEFVDN-GPLLQIDMVWCYFMLRDISWLSEAGIRLRK 77 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C-----~~~~l~~vDN-~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ 77 (419)
+-.++.+|..++++++|.+|+.++..|=+..... ..+.-+...- ..-+.+.+..||+.+++. .+|...+.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~---~~A~~~~~~ 255 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY---DEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHH
Confidence 4567899999999999999999988765433211 0000000000 001456788899888764 455555544
Q ss_pred HHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHh
Q 014748 78 AREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (419)
Q Consensus 78 ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~ 136 (419)
|-+. +. ..-.+ +..-|.+.+..|++++|...|..+-.
T Consensus 256 al~~----~p-------------~~~~a-----~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 256 VLTE----EE-------------KNPKA-----LFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHH----CT-------------TCHHH-----HHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHh----CC-------------CCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4332 11 11122 33347778899999999999987744
No 211
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=86.43 E-value=10 Score=33.22 Aligned_cols=147 Identities=8% Similarity=-0.098 Sum_probs=80.3
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhC-----CCCCHHHH---HHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLR-----DISWLSEA---GIRLRK 77 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~-----~~~~l~dA---~~rL~~ 77 (419)
.+...|....+.++|++|+..+-.+=+.+..-.. + -+|+ .-+.+||+.+. ....+..+ ..+..+
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-----~-~~a~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-----I-DYVM--YMRGLTNMALDDSALQGFFGVDRSDRDPQQARA 114 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-----H-HHHH--HHHHHHHHHHHC--------------CCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-----H-HHHH--HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHH
Confidence 5677899999999999999998877665543211 0 0122 33456666532 11111111 234555
Q ss_pred HHHHHHHHhCCChH---------HHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHH
Q 014748 78 AREGIERAHGKDSS---------RVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESL 148 (419)
Q Consensus 78 ae~~f~r~yG~~~~---------Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l 148 (419)
|...|++..-..|. |+..+.+. .-+.++..|.+.+..|++++|...+..+-..++.- +..-
T Consensus 115 A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~ 184 (225)
T 2yhc_A 115 AFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT---QATR 184 (225)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS---HHHH
T ss_pred HHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC---CccH
Confidence 66666555432221 11111110 11233456778889999999999999887766442 1111
Q ss_pred HHHHhCCCCHHHHHHHHH-HhCCCHHHHHHHH
Q 014748 149 SLVMSMGFKEQDAKRALR-ICSQDVGSAIDFL 179 (419)
Q Consensus 149 ~~LmeMGF~~~~ArrALr-at~gdve~Av~~L 179 (419)
.. ..++|.- .--|+.+.|+.++
T Consensus 185 ~a---------~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 185 DA---------LPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HH---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HH---------HHHHHHHHHHcCCcHHHHHHH
Confidence 11 1222222 2357888888876
No 212
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=86.32 E-value=0.46 Score=44.40 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHhCCC
Q 014748 142 QVPDESLSLVMSMGFKEQDAKRALRICSQD 171 (419)
Q Consensus 142 ~vdee~l~~LmeMGF~~~~ArrALrat~gd 171 (419)
-.|.++|..|++|||++..++.||..+++|
T Consensus 167 g~~~~~v~~~~~mg~~~~~~~~al~~~~~~ 196 (215)
T 1tte_A 167 GIDHDLIDEFESQGFEKDKIVEVLRRLGVK 196 (215)
T ss_dssp CCSHHHHHHHHHHTCCHHHHHHHHHHSCCS
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 457889999999999999999999998875
No 213
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=86.29 E-value=3.5 Score=38.83 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=14.6
Q ss_pred hHhhhhccCChhHHHHHhHhHHh
Q 014748 114 EGVAAYHSGQFDKARNALTSAQA 136 (419)
Q Consensus 114 qgvv~~~~g~~~eA~~~L~~a~~ 136 (419)
-|.+....|++++|...+..+-.
T Consensus 141 l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34445566777777777766644
No 214
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=85.89 E-value=2.5 Score=45.75 Aligned_cols=95 Identities=13% Similarity=-0.027 Sum_probs=61.3
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.|+-.|..+.++|+|++|+.++-.|=+. + -+++.....+.-+|+.+++ +.+|...+++|-+.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l----~-------P~~~~a~~nLg~~l~~~g~---~~eA~~~~~~Al~l---- 72 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEV----F-------PEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRI---- 72 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----C-------SCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----C-------CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh----
Confidence 5788899999999999999999876433 2 2444455556677777653 45555555444322
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHh
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~ 136 (419)
++ .. ...+..-|.+.+..|++++|.+.+.+|=+
T Consensus 73 ---~P---------~~------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 73 ---SP---------TF------ADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp ---CT---------TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CC---------CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 11 11233346677788899999888887754
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=85.81 E-value=2.6 Score=42.88 Aligned_cols=86 Identities=19% Similarity=0.100 Sum_probs=70.2
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhh----hhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMG----EEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~a----de~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~a 78 (419)
++-++.--|.....+|+|++|+.+...| .+.|..=.+.+..+.-|.|.+. +.+ ...++|..-+.+|
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~-------~~q---g~~~eA~~~~~~A 408 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY-------MGL---ENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH-------HHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-------Hhc---cCHHHHHHHHHHH
Confidence 4456677788899999999999998776 4566677888888888888763 333 4679999999999
Q ss_pred HHHHHHHhCCChHHHHHHHc
Q 014748 79 REGIERAHGKDSSRVRLLQA 98 (419)
Q Consensus 79 e~~f~r~yG~~~~Rl~~lkg 98 (419)
-..+++.||+++-.+..|+.
T Consensus 409 l~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 409 IAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHH
Confidence 99999999999988877664
No 216
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=85.45 E-value=1.9 Score=43.47 Aligned_cols=98 Identities=11% Similarity=-0.093 Sum_probs=67.4
Q ss_pred hhhhhHhHHHHHHhhch-HHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMY-KDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y-~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
+..++.+|+.+++.++| ++|+.++..|=+.. .+.+-...-+.+||+.+++ +..|..+|
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-----------p~~~~a~~~lg~~~~~~g~----------~~~A~~~~ 160 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-----------PELVEAWNQLGEVYWKKGD----------VTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTC----------HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----------CCCHHHHHHHHHHHHHcCC----------HHHHHHHH
Confidence 34678899999999999 99999998775543 2334455678899998765 45666666
Q ss_pred HHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhcc---------CChhHHHHHhHhHHhhh
Q 014748 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHS---------GQFDKARNALTSAQAKF 138 (419)
Q Consensus 83 ~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~---------g~~~eA~~~L~~a~~~~ 138 (419)
+++.-.+ |.. ..+..-|.+.+.. |++++|...+..+-+..
T Consensus 161 ~~al~~~------------p~~----~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 161 SGALTHC------------KNK----VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHTTC------------CCH----HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhC------------CCH----HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 6665433 221 2223345556666 88999999888876543
No 217
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=85.38 E-value=3.4 Score=36.26 Aligned_cols=61 Identities=10% Similarity=-0.084 Sum_probs=45.0
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
.++..|..+++.++|++|+.++-.|=+... +.+....-+.+||+.+++ .+.|..-+.++-+
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-----------~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDP-----------TYNYAHLNRGIALYYGGR---DKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCc-----------cccHHHHHHHHHHHHhcc---HHHHHHHHHHHHH
Confidence 456788999999999999999988766533 234566778899998765 5666666666544
No 218
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=85.32 E-value=7.7 Score=37.41 Aligned_cols=81 Identities=11% Similarity=-0.052 Sum_probs=48.7
Q ss_pred hhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHH
Q 014748 49 PLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKAR 128 (419)
Q Consensus 49 a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~ 128 (419)
+-..+...+|++........+.|..-+.++-+.|......++.. ..-..-....+...|.+.+..|++++|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED--------EKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC--------HHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc--------cccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 44446667777776677888888888888877665554211110 0001223344455566677777777777
Q ss_pred HHhHhHHhh
Q 014748 129 NALTSAQAK 137 (419)
Q Consensus 129 ~~L~~a~~~ 137 (419)
..+..+-..
T Consensus 258 ~~~~~~l~~ 266 (514)
T 2gw1_A 258 EDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777766443
No 219
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=85.10 E-value=3.9 Score=36.73 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=12.7
Q ss_pred HhhhhccCChhHHHHHhHhHHhhh
Q 014748 115 GVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 115 gvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
|.+.+..|++++|...+..+-...
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC
Confidence 444445566666665555554433
No 220
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=84.54 E-value=7.5 Score=34.10 Aligned_cols=45 Identities=18% Similarity=0.117 Sum_probs=27.2
Q ss_pred cCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHH-HHHhCCCHHHHHHHHH
Q 014748 121 SGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA-LRICSQDVGSAIDFLV 180 (419)
Q Consensus 121 ~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrA-Lrat~gdve~Av~~L~ 180 (419)
.|++++|...+.++-+..+ .....+. .+| +....|+.+.|+.++.
T Consensus 97 ~g~~~~A~~~~~~al~~~P------~~~~~~~---------~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 97 KGYLEQALSVLKDAERVNP------RYAPLHL---------QRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp HHHHHHHHHHHHHHHHHCT------TCHHHHH---------HHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCc------ccHHHHH---------HHHHHHHHcCChHHHHHHHH
Confidence 3889999998888765432 2122121 122 2334678888888774
No 221
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=84.44 E-value=4.5 Score=31.08 Aligned_cols=64 Identities=16% Similarity=-0.070 Sum_probs=48.0
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
..++..|..+++.++|++|+.+|-.|=+... +++....-+.+||+.+++ .++|..-+.+|-+..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDP-----------DYVGTYYHLGKLYERLDR---TDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhh
Confidence 4577899999999999999999987755432 344456668999998875 567777777776553
No 222
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=84.39 E-value=5.2 Score=37.64 Aligned_cols=50 Identities=10% Similarity=-0.172 Sum_probs=33.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCC
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDI 65 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~ 65 (419)
..++..|..+.+.++|++|+.++-.|=+.. | +++-....+.+||..+++.
T Consensus 170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p-------~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD----P-------NFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----T-------TCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C-------CcHHHHHHHHHHHHHcCCH
Confidence 456778888999999999999887775432 2 2223344566677666554
No 223
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.96 E-value=1.1 Score=34.44 Aligned_cols=36 Identities=14% Similarity=0.344 Sum_probs=32.4
Q ss_pred CHHHHHHHHhC--CCCHHHHHHHHHhcCCCHHHHHHhh
Q 014748 216 DIEKIKELVSI--GFEKELVAEALRRNENDSQKALDDL 251 (419)
Q Consensus 216 ~~~~l~~L~~M--GF~~~~A~~ALr~t~nnve~Al~~L 251 (419)
-++.+.+|.+| .+++...+..|+.++||++.|++-|
T Consensus 18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45789999999 6899999999999999999999954
No 224
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=83.92 E-value=19 Score=32.02 Aligned_cols=118 Identities=14% Similarity=-0.073 Sum_probs=71.9
Q ss_pred hhhHhHHHHHH----hhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHH----hCCCCCHHHHHHHHHH
Q 014748 6 MLHANAKSLIK----RHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFM----LRDISWLSEAGIRLRK 77 (419)
Q Consensus 6 ~lhek~r~~~~----~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~----l~~~~~l~dA~~rL~~ 77 (419)
.++..|..+++ .++|++|+.++..|=+. +.+.....+.+||+. .++ .+.|..-+.+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------------~~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~ 103 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------------NYSNGCHLLGNLYYSGQGVSQN---TNKALQYYSK 103 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHhCCCCcccC---HHHHHHHHHH
Confidence 45667888888 99999999999888543 245566678889987 443 4445444444
Q ss_pred HHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhc----cCChhHHHHHhHhHHhhhccCCCCHHHHHHHHh
Q 014748 78 AREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYH----SGQFDKARNALTSAQAKFFQLQVPDESLSLVMS 153 (419)
Q Consensus 78 ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~----~g~~~eA~~~L~~a~~~~~~l~vdee~l~~Lme 153 (419)
|-+. | .++. +..-|.+.+. .|++++|...+.++-+.- +..
T Consensus 104 a~~~----------------~--~~~a------~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~------- 147 (273)
T 1ouv_A 104 ACDL----------------K--YAEG------CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DGD------- 147 (273)
T ss_dssp HHHT----------------T--CHHH------HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHH-------
T ss_pred HHHc----------------C--CccH------HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----cHH-------
Confidence 4221 1 1221 1122334444 799999999998775421 222
Q ss_pred CCCCHHHHHHHHHH-h----CCCHHHHHHHHH
Q 014748 154 MGFKEQDAKRALRI-C----SQDVGSAIDFLV 180 (419)
Q Consensus 154 MGF~~~~ArrALra-t----~gdve~Av~~L~ 180 (419)
.....|.-. . .++.+.|+.|+.
T Consensus 148 -----a~~~lg~~~~~~~~~~~~~~~A~~~~~ 174 (273)
T 1ouv_A 148 -----GCTILGSLYDAGRGTPKDLKKALASYD 174 (273)
T ss_dssp -----HHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 222222222 2 678999999874
No 225
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=82.99 E-value=12 Score=36.32 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=65.6
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
++..++..|+...+.++|++|+.++-.+=+... + +-..+-+.+||+.+++ ...|...+.++-+..
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-----------~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHP-----------T-PNSYIFLALTLADKEN---SQEFFKFFQKAVDLN 306 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------C-HHHHHHHHHHTCCSSC---CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-----------C-chHHHHHHHHHHHhcC---HHHHHHHHHHHhccC
Confidence 356788999999999999999999988765421 1 2334557777776654 456655555543321
Q ss_pred HHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 83 ~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
. + ....+..-|.+.+..|++++|...+..+-...
T Consensus 307 ----~-~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 307 ----P-E-----------------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp ----T-T-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----C-C-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 1 1 11234445677778899999998888876543
No 226
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=82.96 E-value=1.5 Score=36.47 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHHhh
Q 014748 214 AVDIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDL 251 (419)
Q Consensus 214 ~v~~~~l~~L~~M-GF~~~~A~~ALr~t~nnve~Al~~L 251 (419)
.++++.|..+++- |-++..|++||+.++||+-.|+-.|
T Consensus 63 ~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3677888888876 9999999999999999998888654
No 227
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=82.41 E-value=2.7 Score=31.63 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 014748 145 DESLSLVMSMGFKEQDAKRALRIC 168 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat 168 (419)
++.++.|+.+||++.+|.+|+...
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 228
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=82.40 E-value=4.9 Score=33.33 Aligned_cols=120 Identities=8% Similarity=0.001 Sum_probs=62.6
Q ss_pred HHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCChHHHH
Q 014748 15 IKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVR 94 (419)
Q Consensus 15 ~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~Rl~ 94 (419)
..+++++.|+..+..|-. .--+.++..+-+..||+.+++ .+.|...+.+|-+. ++.
T Consensus 8 ~~~~~~e~ai~~~~~a~~-----------~~p~~~~~~~~la~~y~~~~~---~~~A~~~~~~al~~-------~p~--- 63 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTP-----------SPRQKSIKGFYFAKLYYEAKE---YDLAKKYICTYINV-------QER--- 63 (150)
T ss_dssp CCHHHHHHHHHHHHHHSC-----------SHHHHHTTHHHHHHHHHHTTC---HHHHHHHHHHHHHH-------CTT---
T ss_pred HHcChHHHHHHHHHHhcc-----------cCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh-------CCC---
Confidence 356677777777765533 222345566667777777765 33444444333221 111
Q ss_pred HHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHH----HHHHhCCC-CH-HH--HHHHHH
Q 014748 95 LLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESL----SLVMSMGF-KE-QD--AKRALR 166 (419)
Q Consensus 95 ~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l----~~LmeMGF-~~-~~--ArrALr 166 (419)
. ...+..-|.+.+..|++++|...+.++-+..+.- .+.+ ..+..+|- .+ .. ..+|++
T Consensus 64 ------~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 64 ------D------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ---KDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp ------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred ------C------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0 1223334666667777778877777775544442 2222 13445663 32 12 246666
Q ss_pred HhCCCHH
Q 014748 167 ICSQDVG 173 (419)
Q Consensus 167 at~gdve 173 (419)
..-++++
T Consensus 129 l~P~~~~ 135 (150)
T 4ga2_A 129 LFPGSPA 135 (150)
T ss_dssp HSTTCHH
T ss_pred hCcCCHH
Confidence 6555543
No 229
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.14 E-value=2.5 Score=31.62 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=33.3
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 014748 277 DAKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEP 315 (419)
Q Consensus 277 ~~~I~~L~~M-GF~~~~A~~AL~~~~nN~e~A~d~Ll~~~ 315 (419)
.+.|.+.+.+ |-++..|+.-|..+++|++.|++..|.++
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 4467777665 89999999999999999999999888765
No 230
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=81.54 E-value=16 Score=33.91 Aligned_cols=57 Identities=19% Similarity=0.077 Sum_probs=40.4
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREG 81 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~ 81 (419)
.++-.|..+++.|+|++|+.+|-. + +++-..+-++-+|+.++ ..++|..-|.++.+.
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~---------~-------~~~~~~~~l~~~~~~~g---~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ---------G-------DSLECMAMTVQILLKLD---RLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT---------C-------CSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC---------C-------CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhh
Confidence 467889999999999999998876 1 22234445667777655 467777777776554
No 231
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=80.42 E-value=4.2 Score=40.25 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=55.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhcCCCHHHHHH----hh----cCC-cchhHHhhhhhHHhhhhhccchHHHHHHHHhCCC
Q 014748 218 EKIKELVSIGFEKELVAEALRRNENDSQKALD----DL----TNP-ESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGF 288 (419)
Q Consensus 218 ~~l~~L~~MGF~~~~A~~ALr~t~nnve~Al~----~L----~np-d~~~~L~~~~~~~~~~~~~~~d~~~I~~L~~MGF 288 (419)
..|..|++|||+..+..++|..+++-...-+. .| -++ ++...|...+.-...+. .. =...|.-|..+||
T Consensus 48 ~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~-e~-L~~~l~fL~~lGl 125 (335)
T 4fp9_B 48 RVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQ-MRKRSSYLQKLGL 125 (335)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCH-HH-HHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCH-HH-HHHHHHHHHHcCC
Confidence 46889999999999999999999986433222 22 122 22222222211000000 01 1235788999999
Q ss_pred CHHHHHHHHHHc----CCCHH---HHHHHhhcC
Q 014748 289 ERPRVIEACRAG----GDDIH---QIMLQLLGE 314 (419)
Q Consensus 289 ~~~~A~~AL~~~----~nN~e---~A~d~Ll~~ 314 (419)
+.......+..+ ..+.+ .-+.+|...
T Consensus 126 ~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~~~ 158 (335)
T 4fp9_B 126 GEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEK 158 (335)
T ss_dssp TTTTHHHHHHHCGGGGTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCchhhccChHHHHHHHHHHHHH
Confidence 998888877665 34444 344666544
No 232
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=80.42 E-value=22 Score=31.30 Aligned_cols=120 Identities=13% Similarity=0.040 Sum_probs=73.2
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhcc---chhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVD---NGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vD---N~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
++-.+..+|-.+++.|+|++|+...-.|=+.=..|... +..+ +.+.+-....-| |..+....+|-.-..+|-
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~--~a~~~~~~~a~a~~n~g~a---l~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE--EAFDHAGFDAFCHAGLAEA---LAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT--SCCCHHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch--hhhhhccchHHHHHHHHHH---HHHCCCHHHHHHHHHHHH
Confidence 45567899999999999999999987776654444321 1111 112222233333 444567778877777776
Q ss_pred HHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 80 EGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 80 ~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
+.|.+.-=-++... .++ +.=+.-.|+..+..|++++|...+.++-+..
T Consensus 85 ~l~n~~~e~~pd~~----------~A~-~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 85 HYFNRRGELNQDEG----------KLW-ISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHCCTTSTHH----------HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhhccccCCCchH----------HHH-HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66544432222111 122 0001235888889999999999999885544
No 233
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=80.35 E-value=1.9 Score=29.85 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHHh-hcCC
Q 014748 218 EKIKELVSI-GFEKELVAEALRRNENDSQKALDD-LTNP 254 (419)
Q Consensus 218 ~~l~~L~~M-GF~~~~A~~ALr~t~nnve~Al~~-L~np 254 (419)
+.|.+.++. |-++..|+.-|..++.|++.|++. +.+|
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 346666666 889999999999999999999994 4444
No 234
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=80.33 E-value=7.5 Score=28.90 Aligned_cols=61 Identities=21% Similarity=0.064 Sum_probs=42.6
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhh-hhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPL-LQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~-L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
|....+|..+++.++|++|+.++-.+=+.+.. .+. ...-+..||+.+++ ..+|..-+.++-
T Consensus 1 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----------~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al 62 (99)
T 2kc7_A 1 MDQLKTIKELINQGDIENALQALEEFLQTEPV-----------GKDEAYYLMGNAYRKLGD---WQKALNNYQSAI 62 (99)
T ss_dssp CCTHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-----------THHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------cHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 34678999999999999999999877654332 233 55667889988765 444544444443
No 235
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=78.90 E-value=9.9 Score=27.27 Aligned_cols=62 Identities=21% Similarity=0.114 Sum_probs=43.8
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
-.++..|..+++.++|++|+.++..|=+... +.+.....+.+||+.+++ .++|...+.++-+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------NNAEAWYNLGNAYYKQGD---YDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHh
Confidence 4577889999999999999999987755432 223455678899998765 4555555555433
No 236
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.88 E-value=3.8 Score=31.19 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=33.2
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 278 AKIEQLVAM-GFERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 278 ~~I~~L~~M-GF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
+.|.+.+.. |-++..|+.-|..+++|++.|++-.+.++..
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~~ 59 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETNI 59 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 456666665 8999999999999999999999998876543
No 237
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.63 E-value=3.5 Score=31.44 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=33.0
Q ss_pred HHHHHHHHhC-C-CCHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 014748 277 DAKIEQLVAM-G-FERPRVIEACRAGGDDIHQIMLQLLGEPG 316 (419)
Q Consensus 277 ~~~I~~L~~M-G-F~~~~A~~AL~~~~nN~e~A~d~Ll~~~~ 316 (419)
.+.|.+.+++ | -+...|+.-|..+++|++.|++-.|.+..
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3456776665 8 78889999999999999999998887644
No 238
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=78.54 E-value=7.3 Score=30.10 Aligned_cols=66 Identities=11% Similarity=-0.049 Sum_probs=47.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREG 81 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~ 81 (419)
-.++..|...++.++|++|+.++..+=+.+.... ..+-..+-+.+||+.+++ .+.|...+.++-..
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~--------~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD--------KAAGGLLKLGLSQYGEGK---NTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST--------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc--------ccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 3567789999999999999999988766553221 124456778999998765 56676666655443
No 239
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=77.31 E-value=0.89 Score=33.64 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=29.3
Q ss_pred hHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHhhc
Q 014748 276 ADAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLG 313 (419)
Q Consensus 276 d~~~I~~L~~M--GF~~~~A~~AL~~~~nN~e~A~d~Ll~ 313 (419)
-.+.+..|.+| .++++..+..|++++||++.|++-||.
T Consensus 12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45678999999 899999999999999999999998874
No 240
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=77.09 E-value=3.2 Score=36.32 Aligned_cols=57 Identities=12% Similarity=-0.155 Sum_probs=39.6
Q ss_pred HhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 9 ANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 9 ek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
..|..+++.++|++|+.++-.|=+... +.+-..+.+..||+.+++ .++|..-+.++-
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al 115 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAP-----------NNVDCLEACAEMQVCRGQ---EKDALRMYEKIL 115 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 389999999999999999977654322 334455667888888875 445555544443
No 241
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.07 E-value=3.1 Score=31.12 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHHh-hcCCc
Q 014748 218 EKIKELVSI-GFEKELVAEALRRNENDSQKALDD-LTNPE 255 (419)
Q Consensus 218 ~~l~~L~~M-GF~~~~A~~ALr~t~nnve~Al~~-L~npd 255 (419)
+.|.+.+.+ |-++..|+.-|..++.|++.|++. +.+|+
T Consensus 17 e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 17 GLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 467777776 899999999999999999999994 45553
No 242
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.76 E-value=3.9 Score=31.15 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHHh-hcCCc
Q 014748 218 EKIKELVSI-GFEKELVAEALRRNENDSQKALDD-LTNPE 255 (419)
Q Consensus 218 ~~l~~L~~M-GF~~~~A~~ALr~t~nnve~Al~~-L~npd 255 (419)
+.|.+.+.. |-++..|+.-|..++.|++.|++. +.+|.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 457777776 899999999999999999999994 56665
No 243
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=76.54 E-value=7 Score=30.38 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=32.9
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 014748 277 DAKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGEPG 316 (419)
Q Consensus 277 ~~~I~~L~~M--GF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~ 316 (419)
+..|.++.++ -+....+.+.|+.+++|+|++++.||.+.-
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~L 55 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERL 55 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCC
Confidence 3456667666 577888999999999999999999998643
No 244
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=76.24 E-value=10 Score=35.54 Aligned_cols=159 Identities=11% Similarity=0.096 Sum_probs=80.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHh----C----CCHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHhhcCCCCCCCcCCH
Q 014748 146 ESLSLVMSMGFKEQDAKRALRIC----S----QDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDI 217 (419)
Q Consensus 146 e~l~~LmeMGF~~~~ArrALrat----~----gdve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~t~~~~~v~~ 217 (419)
+.|+.|.+||++....++....+ . .++..-++||.+.--....... .-.+.+.-+..+. .. -.
T Consensus 7 ~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~------il~~~P~lL~~~~--e~-l~ 77 (270)
T 3m66_A 7 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGA------FLTKNHAIFSEDL--EN-LK 77 (270)
T ss_dssp HHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHH------HHHHCTTGGGSCH--HH-HH
T ss_pred HHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHH------HHHhCChhhhCCH--HH-HH
Confidence 56777778888777776654441 1 2455666777554222211110 0000000000000 00 11
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhcCC----C---HHHHHHhh-cC---C--cchhHHhhhhhHHhhhhhccc--hHHHHHH
Q 014748 218 EKIKELVSIGFEKELVAEALRRNEN----D---SQKALDDL-TN---P--ESNSAIQLYIESRKRKRCRQA--ADAKIEQ 282 (419)
Q Consensus 218 ~~l~~L~~MGF~~~~A~~ALr~t~n----n---ve~Al~~L-~n---p--d~~~~L~~~~~~~~~~~~~~~--d~~~I~~ 282 (419)
..++.|.++||+.....+++..++. + +...+++| .. + ++...+... |. -...+. -...+.-
T Consensus 78 p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~--P~--il~~s~e~~~~~v~~ 153 (270)
T 3m66_A 78 TRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRL--PR--LLTGSLEPVKENMKV 153 (270)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHS--GG--GGTSCSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhC--Cc--ceeechHHHHHHHHH
Confidence 3577788888888888888877764 2 22333333 11 0 000001100 00 000011 1234553
Q ss_pred -HHhCCCCHHHHHHHHHHc-------CCCHHHHHHHhhcCCCC
Q 014748 283 -LVAMGFERPRVIEACRAG-------GDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 283 -L~~MGF~~~~A~~AL~~~-------~nN~e~A~d~Ll~~~~~ 317 (419)
+..|||+.+.+..++..+ -+++..-++||.+..+-
T Consensus 154 l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~ 196 (270)
T 3m66_A 154 YRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSI 196 (270)
T ss_dssp HHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCC
T ss_pred HHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCC
Confidence 479999999998888765 34678888999877664
No 245
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=75.75 E-value=11 Score=27.97 Aligned_cols=58 Identities=12% Similarity=-0.015 Sum_probs=40.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRK 77 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ 77 (419)
.+...|..+++.++|++|+.++-.+=+... +.+-....+.+||+.+++ .+.|...+.+
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~ 97 (118)
T 1elw_A 40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-----------DWGKGYSRKAAALEFLNR---FEEAKRTYEE 97 (118)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCc-----------ccHHHHHHHHHHHHHHhh---HHHHHHHHHH
Confidence 456789999999999999999988766532 223455678889988765 3444444333
No 246
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=75.35 E-value=3 Score=42.30 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=66.8
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
+-.++..|..++++++|++|+.++..|=+.. -+.+.....+..||+.+++ ..+|..-+.+|-+.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-----------p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l-- 69 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELN-----------PSNAIYYGNRSLAYLRTEC---YGYALGDATRAIEL-- 69 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHh--
Confidence 4457778889999999999999998775542 2235666778899998875 44555444444332
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
++. . ...+..-|.+.+..|++++|...+.++-+..
T Consensus 70 -----~p~---------~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 70 -----DKK---------Y------IKGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp -----CTT---------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -----CCC---------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 111 0 1223334777788999999999998886543
No 247
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=74.62 E-value=14 Score=28.76 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=45.5
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
..++..|..+++.++|++|+.++-.|=+.+.. .+-...-+.+||+.+++ ..+|...+.++-
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al 88 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-----------HQALRVFYAMVLYNLGR---YEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------chHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 45678899999999999999999887665432 24455678999999875 556666666554
No 248
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.61 E-value=0.63 Score=39.98 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=34.1
Q ss_pred HHHHHHHhC-CCC-HHHHHHHHHHcCCCHHHHHHHhhcCCCCCCcc
Q 014748 278 AKIEQLVAM-GFE-RPRVIEACRAGGDDIHQIMLQLLGEPGSNPTA 321 (419)
Q Consensus 278 ~~I~~L~~M-GF~-~~~A~~AL~~~~nN~e~A~d~Ll~~~~~~~~~ 321 (419)
-.|++|.+. |.. ...-.+||++++||+.+|+.+|.+.....+.+
T Consensus 20 ~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~~p~q 65 (129)
T 2lva_A 20 MLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPSQ 65 (129)
Confidence 357777777 877 45567799999999999999998876654433
No 249
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=72.41 E-value=9.6 Score=41.20 Aligned_cols=97 Identities=13% Similarity=-0.026 Sum_probs=63.5
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
-.++..|..+.+.|+|++|+.++-.|=+. =-+++-....+..||+.+++ ..+| .++|++
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----------~P~~~~a~~nLg~~l~~~g~---~~~A-------~~~~~k 102 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIRI-----------SPTFADAYSNMGNTLKEMQD---VQGA-------LQCYTR 102 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTC---HHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCC---HHHH-------HHHHHH
Confidence 35677899999999999999998776332 22445555667788887764 3444 444444
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
+.- |.- .. ...+..-|.+.+..|++++|...+.+|-+.
T Consensus 103 Al~--------l~P-~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 103 AIQ--------INP-AF------ADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHH--------HCT-TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHH--------hCC-CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 321 111 11 122334477788899999999999888654
No 250
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=71.70 E-value=25 Score=35.06 Aligned_cols=104 Identities=12% Similarity=-0.014 Sum_probs=65.0
Q ss_pred hhHhHHHHHHh---------hchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHh----CCCCCHHHHHH
Q 014748 7 LHANAKSLIKR---------HMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFML----RDISWLSEAGI 73 (419)
Q Consensus 7 lhek~r~~~~~---------~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l----~~~~~l~dA~~ 73 (419)
+...|..+.+. ++|++|+.++-.|=+... +.+....-+.+||+.+ .+ ...
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~~~~~~~------~~g 235 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-----------LDGRSWYILGNAYLSLYFNTGQ------NPK 235 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHHHHTTC------CHH
T ss_pred HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHHHHhhcc------ccc
Confidence 44456666666 999999999988765432 2344455667777766 11 124
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhc
Q 014748 74 RLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 139 (419)
Q Consensus 74 rL~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~ 139 (419)
+...|...|++..--++. ..-....+..-|.+.+..|++++|...+..+-...+
T Consensus 236 ~~~~A~~~~~~al~~~p~------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRK------------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHHHHCGG------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhCCC------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 555666666655432221 112233445567788899999999999998866543
No 251
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=71.25 E-value=19 Score=27.56 Aligned_cols=65 Identities=11% Similarity=-0.051 Sum_probs=47.5
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
..++..|..+++.++|++|+.++-.|=+.+. +++....-+.+||+.+++ .++|..-+.++-+...
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----------TYSVAWKWLGKTLQGQGD---RAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----------CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcc
Confidence 3567889999999999999999887754332 334445677889988864 5677777777766543
No 252
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=71.19 E-value=8.7 Score=32.23 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=40.7
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 014748 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (419)
Q Consensus 7 lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~a 78 (419)
+.++|..+++.++|++|+.++-.|=+... +.+-....+.+||+.+++ .++|..-+.++
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-----------~~~~a~~~la~~~~~~g~---~~~A~~~~~~a 66 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-----------SRGDVKLAKADCLLETKQ---FELAQELLATI 66 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-----------TSHHHHHHHHHHHHHTTC---HHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----------CcHHHHHHHHHHHHHCCC---HHHHHHHHHHh
Confidence 57899999999999999998876644332 345556778888887764 45555544443
No 253
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=70.78 E-value=9.8 Score=35.61 Aligned_cols=81 Identities=10% Similarity=0.078 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhcCC----CHH---HHHHhhcC-----CcchhHHhhhhhHHhhhhhccchHHHHHHH-H
Q 014748 218 EKIKELVSIGFEKELVAEALRRNEN----DSQ---KALDDLTN-----PESNSAIQLYIESRKRKRCRQAADAKIEQL-V 284 (419)
Q Consensus 218 ~~l~~L~~MGF~~~~A~~ALr~t~n----nve---~Al~~L~n-----pd~~~~L~~~~~~~~~~~~~~~d~~~I~~L-~ 284 (419)
..+..|.++||+..+..+.+..++. +++ ..+++|.. .++...+...+.-...+.. . =...|+-| .
T Consensus 43 ~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~-~-l~~~v~~L~~ 120 (270)
T 3m66_A 43 QMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-R-LDNRLGFFQK 120 (270)
T ss_dssp HHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHH-H-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHH-H-HHHHHHHHHH
Confidence 3689999999999999999998874 344 34444421 1111111111100000000 1 23456778 5
Q ss_pred hCCCCHHHHHHHHHHc
Q 014748 285 AMGFERPRVIEACRAG 300 (419)
Q Consensus 285 ~MGF~~~~A~~AL~~~ 300 (419)
.+||+.+.+..++..+
T Consensus 121 ~lG~~~~~i~~ll~~~ 136 (270)
T 3m66_A 121 ELELSVKKTRDLVVRL 136 (270)
T ss_dssp HHCCCHHHHHHHHHHS
T ss_pred HhCCCHHHHHHHHHhC
Confidence 7999999888887643
No 254
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=70.31 E-value=20 Score=34.42 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=78.1
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHh---------CCCCCHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFML---------RDISWLSEAGIRLR 76 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l---------~~~~~l~dA~~rL~ 76 (419)
.+...|..+.+.++|++|+.++-.|=+.. -|.+.+...+..||... ........+.....
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYI-----------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIG 317 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhC-----------CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHH
Confidence 35567888999999999999988775432 23444455567777532 22333344445555
Q ss_pred HHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHH-HhCC
Q 014748 77 KAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLV-MSMG 155 (419)
Q Consensus 77 ~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~L-meMG 155 (419)
.|...|++....++ ...+ .+..-|.+.+..|++++|...+.++=. +.+++.....+ ..+|
T Consensus 318 ~A~~~~~~a~~~~~---------~~~~------~~~~lg~~~~~~~~~~~A~~~~~kaL~----~~~~~~~~~~~~~~~~ 378 (472)
T 4g1t_A 318 HAVAHLKKADEAND---------NLFR------VCSILASLHALADQYEEAEYYFQKEFS----KELTPVAKQLLHLRYG 378 (472)
T ss_dssp HHHHHHHHHHHHCT---------TTCC------CHHHHHHHHHHTTCHHHHHHHHHHHHH----SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCC---------chhh------hhhhHHHHHHHhccHHHHHHHHHHHHh----cCCCChHHHHHHHHHH
Confidence 56666655443111 1111 122346777789999999999987743 22333322211 1111
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Q 014748 156 FKEQDAKRALRICSQDVGSAIDFLVE 181 (419)
Q Consensus 156 F~~~~ArrALrat~gdve~Av~~L~e 181 (419)
. .+....|+.+.|+.+...
T Consensus 379 ------~-~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 379 ------N-FQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp ------H-HHHHTSSCHHHHHHHHHH
T ss_pred ------H-HHHHHCCCHHHHHHHHHH
Confidence 1 123356789999988743
No 255
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=69.80 E-value=18 Score=28.15 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=47.6
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~a 78 (419)
+.-.++-|+.++++++|..|...+-.|=+.+..-.. ..+++..++ .-++.||+.+++ +..|..-+.++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---~~~~~~~i~-~~L~~~~~~~g~---~~~A~~~~~~a 72 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI---STIDKVSVL-DYLSYAVYQQGD---LDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---CSSCHHHHH-HHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC---CcccHHHHH-HHHHHHHHHccC---HHHHHHHHHHH
Confidence 455688999999999999999999999776643321 123333333 567899999987 45555555554
No 256
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=69.45 E-value=12 Score=27.40 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=41.1
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHh-CCCCCHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFML-RDISWLSEAGIRLRK 77 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l-~~~~~l~dA~~rL~~ 77 (419)
.++..|..+++.++|++|+.++-.|=+... . +..+-....+..||+.+ ++. ..|.+-+.+
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~-----~~~~~~~~~l~~~~~~~~~~~---~~A~~~~~~ 102 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIE----D-----EYNKDVWAAKADALRYIEGKE---VEAEIAEAR 102 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSC----C-----TTCHHHHHHHHHHHTTCSSCS---HHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCc----c-----cchHHHHHHHHHHHHHHhCCH---HHHHHHHHH
Confidence 466789999999999999999987755432 1 12445566778888877 654 444444443
No 257
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=69.42 E-value=18 Score=27.04 Aligned_cols=62 Identities=18% Similarity=-0.037 Sum_probs=43.7
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
..++..|..+++.++|++|+.++..+=+... +.+...+-+.+||+.+++ .+.|..-+.++-+
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDP-----------AYSKAYGRMGLALSSLNK---HVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-----------cCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHh
Confidence 3567789999999999999999988866432 224455778889988775 4555555554443
No 258
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=69.27 E-value=4.4 Score=30.41 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.0
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHc
Q 014748 276 ADAKIEQLVAMGFERPRVIEACRAG 300 (419)
Q Consensus 276 d~~~I~~L~~MGF~~~~A~~AL~~~ 300 (419)
..+++.-|++|||++..|..|++..
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4578999999999999999998764
No 259
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=69.17 E-value=0.95 Score=35.57 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=14.2
Q ss_pred hHHHHHHHhCCCCCHHH
Q 014748 54 DMVWCYFMLRDISWLSE 70 (419)
Q Consensus 54 DivWcy~~l~~~~~l~d 70 (419)
=+.|||++|+-|.|-.|
T Consensus 32 ~gcwcylrlqri~qsed 48 (90)
T 1zza_A 32 LGCWCYLRLQRISQSED 48 (90)
T ss_dssp HHHHTTTSSCSSCSSCC
T ss_pred HHHHHHHHHHHHhcccc
Confidence 46899999999988655
No 260
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=68.89 E-value=21 Score=26.38 Aligned_cols=60 Identities=20% Similarity=0.114 Sum_probs=41.7
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
.++..|..+++.++|++|+.++-.+-+... +.+.....+.+||+.+++ ...|...+.++-
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~ 104 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------NNAEAWYNLGNAYYKQGD---YDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence 466789999999999999999988755432 123445678899988764 455555554443
No 261
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=68.00 E-value=6.7 Score=32.49 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=57.5
Q ss_pred hHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCC
Q 014748 10 NAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKD 89 (419)
Q Consensus 10 k~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~ 89 (419)
-|+..++.++|++|+.++-.| |+.-.|.+-...-+.+||+.+++ ...|...|+++.--+
T Consensus 37 la~~y~~~~~~~~A~~~~~~a-----------l~~~p~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~al~~~ 95 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTY-----------INVQERDPKAHRFLGLLYELEEN----------TDKAVECYRRSVELN 95 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHH-----------HHhCCCCHHHHHHHHHHHHHcCc----------hHHHHHHHHHHHHhC
Confidence 045677888888888877655 33344667777778888888775 456777777664322
Q ss_pred hHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHH-hHhHHhhh
Q 014748 90 SSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNA-LTSAQAKF 138 (419)
Q Consensus 90 ~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~-L~~a~~~~ 138 (419)
+ ..++ .+..-|.+.+..|++++|... +.+|-...
T Consensus 96 p---------~~~~------~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 96 P---------TQKD------LVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp T---------TCHH------HHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred C---------CCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 1 1111 223336666777888776654 56665543
No 262
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=67.53 E-value=22 Score=34.60 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=52.2
Q ss_pred CHHHHHHHHhCCCCHHHHHHH---HHH-hCCCHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHhhcCCCCCCCcCCHHH
Q 014748 144 PDESLSLVMSMGFKEQDAKRA---LRI-CSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEK 219 (419)
Q Consensus 144 dee~l~~LmeMGF~~~~ArrA---Lra-t~gdve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~t~~~~~v~~~~ 219 (419)
++..|+-|.++|++...|.++ ++. +-.+++.-++||.+.--...+... -.. +-+.-...+ ...+ ...
T Consensus 19 ~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~-----iv~-~~P~lL~~~--~~~l-~p~ 89 (343)
T 3mva_O 19 NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIAS-----IIS-RYPRAITRT--PENL-SKR 89 (343)
T ss_dssp -CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHH-----HHH-HCGGGGGCC--HHHH-HHH
T ss_pred cHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHH-----HHH-hCcHHHhCC--HHHH-HHH
Confidence 467899999999998888665 221 224688888888766433222210 000 001101000 0001 125
Q ss_pred HHHHHhCCCCHHHHHHHHHhcCC
Q 014748 220 IKELVSIGFEKELVAEALRRNEN 242 (419)
Q Consensus 220 l~~L~~MGF~~~~A~~ALr~t~n 242 (419)
++.|.++||+.....+++..++.
T Consensus 90 l~fL~~lG~s~~~i~~il~~~P~ 112 (343)
T 3mva_O 90 WDLWRKIVTSDLEIVNILERSPE 112 (343)
T ss_dssp HHHHTTTSSCHHHHHHHHHHCSH
T ss_pred HHHHHHcCCCHHHHHHHHHHCCH
Confidence 77888899999999888887764
No 263
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=67.53 E-value=7.6 Score=41.07 Aligned_cols=60 Identities=12% Similarity=-0.051 Sum_probs=41.1
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
.++.+|+.+++.++|++|+..+-.|=+.. -+.+-....+..||+.+++ .++|..-+++|-
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al 494 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-----------GWRWRLVWYRAVAELLTGD---YDSATKHFTEVL 494 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 56788999999999999999987765432 2334455566777877764 445555555443
No 264
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=66.86 E-value=19 Score=29.43 Aligned_cols=61 Identities=13% Similarity=-0.011 Sum_probs=43.3
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
..++..|..+++.++|++|+.++..|=+.. -+++....-+.+||+.+++ ..+|..-+.++-
T Consensus 46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al 106 (164)
T 3sz7_A 46 IYLSNRAAAYSASGQHEKAAEDAELATVVD-----------PKYSKAWSRLGLARFDMAD---YKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHccC---HHHHHHHHHHHH
Confidence 457788999999999999999988775443 2345556678899998875 445554444443
No 265
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=66.52 E-value=8.9 Score=29.78 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=31.3
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHhch
Q 014748 146 ESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEK 183 (419)
Q Consensus 146 e~l~~LmeM--GF~~~~ArrALrat~gdve~Av~~L~e~~ 183 (419)
..|+++.++ -+...-+++.|.++++|+|..++.|++..
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 456666655 56788899999999999999999999874
No 266
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=66.09 E-value=22 Score=27.50 Aligned_cols=64 Identities=17% Similarity=0.010 Sum_probs=47.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
..++..|..+++.++|++|+..+-.|=+... +++-..+-+.+||+.+++ ..+|..-+.++-+..
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDP-----------NFVRAYIRKATAQIAVKE---YASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------CcHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHhC
Confidence 4567889999999999999999877754422 334556678899998875 567777777666554
No 267
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=64.22 E-value=19 Score=27.30 Aligned_cols=61 Identities=13% Similarity=-0.103 Sum_probs=42.4
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
..++..|..+++.++|++|+.++-.|=+... +.+....-+.+||+.+++ ...|..-+.++-
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~ 111 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEP-----------TFIKGYTRKAAALEAMKD---YTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------CchHHHHHHHHHHHHHhh---HHHHHHHHHHHH
Confidence 3467789999999999999999887766432 234455677889988765 445555444443
No 268
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=63.75 E-value=29 Score=25.92 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=46.3
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
..++..|..+++.++|++|+.++-.+=+.+....+... ..+....-+.+||+.+++ ...|...+.++-+
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~ 107 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR----QIAKAYARIGNSYFKEEK---YKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH----HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH
Confidence 35677899999999999999999888776543321110 114456677888888765 4566655555543
No 269
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=63.49 E-value=24 Score=28.26 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=45.4
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
.++..|..+++.++|++|+.++-.|=+.. -+.+...+.+.+||+.+++ ..+|..-+.++-+..
T Consensus 54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 54 YFLGLGACRQSLGLYEQALQSYSYGALMD-----------INEPRFPFHAAECHLQLGD---LDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----------CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45678999999999999999987764432 2344556778999998875 566766666665443
No 270
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.56 E-value=30 Score=26.83 Aligned_cols=62 Identities=15% Similarity=0.041 Sum_probs=43.7
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 4 ~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
...++..|..+++.++|++|+.++..+=+... +.+.....+.+||+.+++ .++|..-+.++-
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al 126 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDG-----------GDVKALYRRSQALEKLGR---LDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----------CCHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----------cCHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 45677789999999999999999987755421 234555678889998775 455555554443
No 271
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.31 E-value=9.3 Score=29.03 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=28.9
Q ss_pred HHHHHHHhC-C-CCHHHHHHHHHhcCCCHHHHHHhh
Q 014748 218 EKIKELVSI-G-FEKELVAEALRRNENDSQKALDDL 251 (419)
Q Consensus 218 ~~l~~L~~M-G-F~~~~A~~ALr~t~nnve~Al~~L 251 (419)
+.|.+.+.+ | -+...|+.-|..++.|++.|++.+
T Consensus 20 e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~f 55 (67)
T 2dam_A 20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDR 55 (67)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 457777776 8 788899999999999999999943
No 272
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=61.38 E-value=16 Score=26.47 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=31.2
Q ss_pred hHHHHHH--HHhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 014748 276 ADAKIEQ--LVAMGFERPRVIEACRAGGDDIHQIMLQLLGEPGS 317 (419)
Q Consensus 276 d~~~I~~--L~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~~~ 317 (419)
.++.|.+ -+=-|=+|+..+.-|+.|+=|++.|++-|++..++
T Consensus 9 Pe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd~ 52 (53)
T 2qho_B 9 PEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDDE 52 (53)
T ss_dssp CHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC----
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhccccC
Confidence 3444544 34459999999999999999999999999986543
No 273
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=60.32 E-value=9.3 Score=29.74 Aligned_cols=89 Identities=10% Similarity=0.075 Sum_probs=51.6
Q ss_pred hhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 014748 17 RHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLL 96 (419)
Q Consensus 17 ~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~Rl~~l 96 (419)
.++|++|+.++-.|=+.... =.+.+...+-+.+||+.+++ .++|...+.++-+. +. +
T Consensus 3 ~g~~~~A~~~~~~al~~~~~--------~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~----~p-~------- 59 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQ--------GKDLAECYLGLGSTFRTLGE---YRKAEAVLANGVKQ----FP-N------- 59 (117)
T ss_dssp ----CCCHHHHHHHHSSCCC--------HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH----CT-T-------
T ss_pred CCcHHHHHHHHHHHHHcCCC--------CccHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh----CC-C-------
Confidence 46777777777655332100 12445666778999998875 45555555544332 11 1
Q ss_pred HcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhh
Q 014748 97 QAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 97 kg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~ 138 (419)
. ...+..-|.+.+..|++++|...+..+-...
T Consensus 60 ----~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 60 ----H------QALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp ----C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ----c------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1 1223345777889999999999998886544
No 274
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=59.89 E-value=22 Score=36.89 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 014748 63 RDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQ 97 (419)
Q Consensus 63 ~~~~~l~dA~~rL~~ae~~f~r~yG~~~~Rl~~lk 97 (419)
+++..+-....++..|++||.++ | |..+|..|.
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~-~-d~~~l~~l~ 717 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNA-H-DLESLFLLH 717 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-T-CHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHc-c-ChhhhHHHH
Confidence 33444445556788999999976 3 777776665
No 275
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=59.53 E-value=30 Score=28.42 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=43.4
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
.++..|..+++.++|++|+.++-.|=+.. -+.+...+.+.+||+.+++ ..+|...+.+|-+
T Consensus 57 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~ 117 (148)
T 2vgx_A 57 FFLGLGACRQAMGQYDLAIHSYSYGAVMD-----------IXEPRFPFHAAECLLQXGE---LAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------TTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----------CCCchHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 45678999999999999999987764332 2344556778999998875 4566665555533
No 276
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=58.85 E-value=21 Score=32.78 Aligned_cols=65 Identities=17% Similarity=0.080 Sum_probs=47.8
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
..+...|..+++.++|++|+..+..|=+. ++ +++....-+.++|+.++ ..++|..-+.+|-+..-
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p-------~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 39 VYYTNRALCYLKMQQPEQALADCRRALEL----DG-------QSVKAHFFLGQCQLEME---SYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CT-------TCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CC-------CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCc
Confidence 35677899999999999999988776443 22 33445567889999887 46778877777766544
No 277
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=58.64 E-value=62 Score=32.52 Aligned_cols=98 Identities=10% Similarity=-0.016 Sum_probs=64.5
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++..|..+++.++|++|+.++..|=+... +.+-....+.+||+.+++ .++|...+.+|-+.
T Consensus 59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~---- 120 (568)
T 2vsy_A 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAP-----------EHPGIALWLGHALEDAGQ---AEAAAAAYTRAHQL---- 120 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh----
Confidence 467789999999999999999988765432 234455678899998876 45665555554332
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhcc---CChhHHHHHhHhHHhhhc
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHS---GQFDKARNALTSAQAKFF 139 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~---g~~~eA~~~L~~a~~~~~ 139 (419)
...+ . ..+..-+.+.+.. |++++|...+.++-+..+
T Consensus 121 ~p~~------------~------~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 121 LPEE------------P------YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp CTTC------------H------HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred CCCC------------H------HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 1111 1 1122234455577 999999999988855443
No 278
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=58.54 E-value=94 Score=30.34 Aligned_cols=118 Identities=8% Similarity=-0.096 Sum_probs=65.7
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH-
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER- 84 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r- 84 (419)
.++-.|..+.++++|++|+.++-.| |..--+++....-..+||+.++. .+.+|..-+.+|-+..-+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~a-----------l~l~P~~~~a~~~~g~~l~~~g~--d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDA-----------IELNAANYTVWHFRRVLLKSLQK--DLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHH-----------HHHCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHH-----------HHhCccCHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHCCCC
Confidence 3566788888889999999887655 22223334444456666666642 145555555554432111
Q ss_pred --HhCCChHHHHHHHcCCcchhhHHHH----------HHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 85 --AHGKDSSRVRLLQAGRHPELALHLR----------MELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 85 --~yG~~~~Rl~~lkg~~~~E~aL~lR----------L~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
.|- +.-.+..-.|........|-+ .+..-|.+.+..|++++|...+.++=..
T Consensus 166 ~~a~~-~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 166 YQVWH-HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHH-HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 111 112222223544444333322 2344567777889999999888877553
No 279
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=58.48 E-value=37 Score=26.20 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=46.4
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
..++..|..+++.++|++|+.++..|=+... +.+....-+.+||+.+++ ..+|..-+.+|-+...
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALELDG-----------QSVKAHFFLGQCQLEMES---YDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHCh
Confidence 4567889999999999999998877755432 234456678899999875 4566666655555443
No 280
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=57.90 E-value=39 Score=27.54 Aligned_cols=109 Identities=9% Similarity=-0.061 Sum_probs=66.5
Q ss_pred hhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 014748 17 RHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLL 96 (419)
Q Consensus 17 ~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~Rl~~l 96 (419)
+++|++|+.++..|=+.= |-.|. +.++|+.-+++. . |.+.|+++.-.
T Consensus 8 ~~d~~~A~~~~~~aa~~g-----------~~~a~----lg~~y~~g~~~~---~-------A~~~~~~Aa~~-------- 54 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-----------EMFGC----LSLVSNSQINKQ---K-------LFQYLSKACEL-------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------CTTHH----HHHHTCTTSCHH---H-------HHHHHHHHHHT--------
T ss_pred ccCHHHHHHHHHHHHcCC-----------CHhhh----HHHHHHcCCCHH---H-------HHHHHHHHHcC--------
Confidence 478999999998884321 12222 888888766543 3 55556555321
Q ss_pred HcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHh-----CCC
Q 014748 97 QAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRIC-----SQD 171 (419)
Q Consensus 97 kg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrALrat-----~gd 171 (419)
| .++.-..|-...+.|.- ..+++++|...+.+|- +.|++......|.... .+|
T Consensus 55 -g--~~~a~~~Lg~~y~~G~g--~~~d~~~A~~~~~~Aa-----------------~~g~~~a~~~Lg~~y~~G~g~~~d 112 (138)
T 1klx_A 55 -N--SGNGCRFLGDFYENGKY--VKKDLRKAAQYYSKAC-----------------GLNDQDGCLILGYKQYAGKGVVKN 112 (138)
T ss_dssp -T--CHHHHHHHHHHHHHCSS--SCCCHHHHHHHHHHHH-----------------HTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred -C--CHHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHH-----------------cCCCHHHHHHHHHHHHCCCCCCcC
Confidence 2 23333444444444431 3678999999988873 3456555566654433 468
Q ss_pred HHHHHHHHH
Q 014748 172 VGSAIDFLV 180 (419)
Q Consensus 172 ve~Av~~L~ 180 (419)
.+.|+.|+.
T Consensus 113 ~~~A~~~~~ 121 (138)
T 1klx_A 113 EKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999984
No 281
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=57.59 E-value=1.4e+02 Score=35.50 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=78.7
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++..||+..+.++|++|...+..|| .-||| .+++.||..+. ...+|-+.|.+|++.-+.+
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKAd------------D~say----~eVa~~~~~lG---kyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKAD------------DPSSY----MEVVQAANTSG---NWEELVKYLQMARKKARES 1167 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcC------------ChHHH----HHHHHHHHHcC---CHHHHHHHHHHHHhhcccc
Confidence 45678999999999999998887662 12222 33677776654 5678888888877433221
Q ss_pred ---------hC--CChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhC
Q 014748 86 ---------HG--KDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSM 154 (419)
Q Consensus 86 ---------yG--~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeM 154 (419)
|- ..++.+.........+. + .--|-..|..|++++|..++.++.. + ......|.-+
T Consensus 1168 ~Idt~LafaYAKl~rleele~fI~~~n~ad--~----~~iGd~le~eg~YeeA~~~Y~kA~n-y------~rLA~tLvkL 1234 (1630)
T 1xi4_A 1168 YVETELIFALAKTNRLAELEEFINGPNNAH--I----QQVGDRCYDEKMYDAAKLLYNNVSN-F------GRLASTLVHL 1234 (1630)
T ss_pred cccHHHHHHHHhhcCHHHHHHHHhCCCHHH--H----HHHHHHHHhcCCHHHHHHHHHhhhH-H------HHHHHHHHHh
Confidence 11 12222222221111111 1 1134557888999999999998843 2 2345667777
Q ss_pred CCCHHHHHHHHHHhC
Q 014748 155 GFKEQDAKRALRICS 169 (419)
Q Consensus 155 GF~~~~ArrALrat~ 169 (419)
|- -+.|..+-+.++
T Consensus 1235 ge-~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1235 GE-YQAAVDGARKAN 1248 (1630)
T ss_pred CC-HHHHHHHHHHhC
Confidence 75 666666666653
No 282
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=57.04 E-value=37 Score=27.04 Aligned_cols=61 Identities=18% Similarity=0.100 Sum_probs=42.5
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
..++-.|..+++.++|++|+..+-.|=+. =.+++-.-.-+..||+.+++ ..+|..-+.+|-
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~a~~~lg~~~~~~~~---~~~A~~~~~~al 108 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCIRL-----------DSKFIKGYIRKAACLVAMRE---WSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHHHh-----------hhhhhHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 45678899999999999999988766332 23344455667889988875 455555555543
No 283
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=56.65 E-value=55 Score=31.76 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=79.5
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhc--cchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014748 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFV--DNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (419)
Q Consensus 7 lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~v--DN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (419)
+.-.|+.+...|+|++||.+|-.+ |+.- .+..-+.+=+|=||+.+.+ ++.|++.|++.++....
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~-----------i~~~~~~~~lea~~l~vqi~L~~~r---~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEG-----------IDNDEAEGTTELLLLAIEVALLNNN---VSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-----------HTSSCSTTHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-----------hccCCCcCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCcc
Confidence 346789999999999999998765 2211 1344455557888888654 66666666553322110
Q ss_pred HhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccC--ChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHH
Q 014748 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSG--QFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAK 162 (419)
Q Consensus 85 ~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g--~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~Ar 162 (419)
.+ ..+ --+++.|.++.|.+++| ++.+|...+...-+.++. -.....|..
T Consensus 169 ~~--------------~~~--d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~----~~~~~lLln--------- 219 (310)
T 3mv2_B 169 TV--------------SGD--NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT----WKTQLGLLN--------- 219 (310)
T ss_dssp HH--------------HHH--HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS----HHHHHHHHH---------
T ss_pred cc--------------ccc--hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC----cccHHHHHH---------
Confidence 00 001 12457788897777777 899999999887666532 112223333
Q ss_pred HHHHHhCCCHHHHHHHHH
Q 014748 163 RALRICSQDVGSAIDFLV 180 (419)
Q Consensus 163 rALrat~gdve~Av~~L~ 180 (419)
+...-|+.+.|-..|.
T Consensus 220 --~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 220 --LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp --HHHHHTCHHHHHHHHH
T ss_pred --HHHHcCCHHHHHHHHH
Confidence 3444578888888763
No 284
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=55.86 E-value=33 Score=28.88 Aligned_cols=63 Identities=10% Similarity=-0.012 Sum_probs=46.5
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREG 81 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~ 81 (419)
..++-.|..+.+.++|++|+.++-.|=+... +++.....+..||+.+++ .++|..-+.+|-+.
T Consensus 71 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-----------~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~l 133 (151)
T 3gyz_A 71 DYIMGLAAIYQIKEQFQQAADLYAVAFALGK-----------NDYTPVFHTGQCQLRLKA---PLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-----------SCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-----------CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 3567789999999999999999987755432 345566778899998875 56666666666543
No 285
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=55.82 E-value=25 Score=36.10 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=8.6
Q ss_pred hhccCChhHHHHHhHhH
Q 014748 118 AYHSGQFDKARNALTSA 134 (419)
Q Consensus 118 ~~~~g~~~eA~~~L~~a 134 (419)
.|+.|++++|..++.++
T Consensus 132 ~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp -----CTTTHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHh
Confidence 66777777777777665
No 286
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=55.44 E-value=1.5e+02 Score=28.68 Aligned_cols=155 Identities=11% Similarity=0.030 Sum_probs=89.1
Q ss_pred HHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCCh
Q 014748 11 AKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDS 90 (419)
Q Consensus 11 ~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~ 90 (419)
..+.+++++|++|+++|..+=..|-..+- .-...| .+++.|| +|-. ..+..-++...||. ++|...=.+.+
T Consensus 40 ~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q-~~sa~D-La~llve---v~~~-~~~~~~~~~~~rl~---~l~~~~p~~~~ 110 (312)
T 2wpv_A 40 ANRYVRSKSYEHAIELISQGALSFLKAKQ-GGSGTD-LIFYLLE---VYDL-AEVKVDDISVARLV---RLIAELDPSEP 110 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHH-HHHHHHH---HHHH-TTCCCSHHHHHHHH---HHHTTCCTTCT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHCCC-cchHHH-HHHHHHH---HHHH-cCCCCCHHHHHHHH---HHHHHCCCCCc
Confidence 45667779999999999988877765532 111222 3444443 2332 34555455555554 55554433455
Q ss_pred HHHHHHH------cCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHH----hhhccCCCCHHHHHHHHhC--CCCH
Q 014748 91 SRVRLLQ------AGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQ----AKFFQLQVPDESLSLVMSM--GFKE 158 (419)
Q Consensus 91 ~Rl~~lk------g~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~----~~~~~l~vdee~l~~LmeM--GF~~ 158 (419)
.|..-|+ ...+....=...||.+=|.+.+..|++.+|..||--.. +.+.. -.+...... ||+.
T Consensus 111 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~-----~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 111 NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVD-----LLWDWLCQVDDIEDS 185 (312)
T ss_dssp THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHH-----HHHHHHHHTTCCCHH
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHH-----HHHHHHHhcCCCCcc
Confidence 6666555 11222233456899999999999999999999885322 12211 122333334 8876
Q ss_pred HHHHHHHHH-----hCCCHHHHHHHH
Q 014748 159 QDAKRALRI-----CSQDVGSAIDFL 179 (419)
Q Consensus 159 ~~ArrALra-----t~gdve~Av~~L 179 (419)
+.-.=++|+ |-+|+..|-..+
T Consensus 186 e~dlf~~RaVL~yL~l~n~~~A~~~~ 211 (312)
T 2wpv_A 186 TVAEFFSRLVFNYLFISNISFAHESK 211 (312)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 554333333 567777666644
No 287
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=54.92 E-value=1e+02 Score=26.53 Aligned_cols=59 Identities=10% Similarity=-0.141 Sum_probs=40.0
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCC-CHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDIS-WLSEAGIRLRKA 78 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~-~l~dA~~rL~~a 78 (419)
.++.-|..++..++|++|+.++..|=+. +.+.-+.-+.++|+. +.+. ....|..-+.+|
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQ-------------GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4566788888899999999999988331 345566677888876 4332 355555544444
No 288
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=54.73 E-value=15 Score=25.89 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=28.2
Q ss_pred HHHHHHHHhC-CCCH-HHHHHHHHHcCCCHHHHHHH
Q 014748 277 DAKIEQLVAM-GFER-PRVIEACRAGGDDIHQIMLQ 310 (419)
Q Consensus 277 ~~~I~~L~~M-GF~~-~~A~~AL~~~~nN~e~A~d~ 310 (419)
.+.|.+..++ |-+. ..|+.=|.+++.|++.|+.-
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4567777777 9886 99999999999999999853
No 289
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=53.70 E-value=1.3e+02 Score=27.46 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=48.8
Q ss_pred HhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCC
Q 014748 9 ANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGK 88 (419)
Q Consensus 9 ek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~ 88 (419)
--+.-+.+.+++++|+..|-..=. ..++|. | +...+=+.-+|+..+ ..++| .+.|.+ +.
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~--~~~~P~------~-~~~~~~la~~~~~~g---~~~~A-------l~~l~~--~~ 128 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMS--RSVDVT------N-TTFLLMAASIYFYDQ---NPDAA-------LRTLHQ--GD 128 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHH--SCCCCS------C-HHHHHHHHHHHHHTT---CHHHH-------HHHHTT--CC
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHh--cccCCC------C-HHHHHHHHHHHHHCC---CHHHH-------HHHHhC--CC
Confidence 345667778889999998854210 013332 2 222233334444433 34444 444444 21
Q ss_pred ChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhh
Q 014748 89 DSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (419)
Q Consensus 89 ~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~ 137 (419)
+. ..+++.|.+....|+.++|...+..+...
T Consensus 129 ~~------------------~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 129 SL------------------ECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp SH------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CH------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 11 22333455566788999999888887654
No 290
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=52.76 E-value=24 Score=26.06 Aligned_cols=55 Identities=18% Similarity=0.110 Sum_probs=38.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCC
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDI 65 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~ 65 (419)
.++-.|..+++.++|++|+..+-.|=+.+...... ..++....-+.+||..+++.
T Consensus 40 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 40 GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-----AIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH-----HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHHHHHHHHHhH
Confidence 46778999999999999999998876654433111 11455566677788777654
No 291
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=52.69 E-value=2.3 Score=49.14 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=33.2
Q ss_pred CHHHHHHHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 144 PDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 144 dee~l~~LmeM-GF~~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
....|..|-++ |.+..+||+||..|+||+|.|++||-+.
T Consensus 5 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRkk 44 (1289)
T 3avx_A 5 TASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS 44 (1289)
T ss_dssp CCSCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34557778776 9999999999999999999999999543
No 292
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=52.47 E-value=15 Score=33.89 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=40.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~a 78 (419)
.+++.|..++++|+|++|+.++-.|=+..- +.+-..+.+.-+|+..+ ..++|...|.++
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-----------~~~~a~~~la~~~~~~g---~~~~A~~~l~~~ 177 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSN-----------QNGEIGLLLAETLIALN---RSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-----------SCHHHHHHHHHHHHHTT---CHHHHHHHHTTS
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----------cchhHHHHHHHHHHHCC---CHHHHHHHHHhC
Confidence 467899999999999999998877644333 22334556666777665 455666655554
No 293
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=52.40 E-value=47 Score=26.35 Aligned_cols=67 Identities=9% Similarity=-0.042 Sum_probs=40.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~a 78 (419)
..++-.|..+++.++|++|+..+..|=+....... ..-+++-...-+..||..+++ +..|.+.+.++
T Consensus 43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~a~~~~~lg~~~~~~~~---~~~A~~~~~ka 109 (127)
T 4gcn_A 43 TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA----DYKLIAKAMSRAGNAFQKQND---LSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch----hhHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 35677899999999999999998877544322211 111233344455666666554 44554444433
No 294
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=52.19 E-value=6.1 Score=29.13 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=28.2
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHhcCCCHHHHHHh
Q 014748 218 EKIKELVSI--GFEKELVAEALRRNENDSQKALDD 250 (419)
Q Consensus 218 ~~l~~L~~M--GF~~~~A~~ALr~t~nnve~Al~~ 250 (419)
+.+++|.+| .++++..+..|+.++|+++.|++-
T Consensus 14 ~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~Ida 48 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDA 48 (54)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 579999999 799999999999999999999984
No 295
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.49 E-value=56 Score=32.63 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=71.0
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f 82 (419)
+..++..+|+=+.+.|+|+.|+.++-.+=+ .|.+ .....=+.|-++=+|+..+|. .-+...+.+|...+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~---~~~~-----~~~kid~~l~~irl~l~~~d~---~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLS---KAIS-----TGAKIDVMLTIARLGFFYNDQ---LYVKEKLEAVNSMI 198 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHH---HHTC-----CCSHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCC-----hHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHhh
Confidence 356788999999999999999999977543 3332 122212334444456666654 45667777776554
Q ss_pred HHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHh
Q 014748 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (419)
Q Consensus 83 ~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~ 136 (419)
.. |.++. +..||..-+|++..+.++|.+|..+|-.+-.
T Consensus 199 ~~--~~d~~--------------~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 199 EK--GGDWE--------------RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp TT--CCCTH--------------HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred hc--CCCHH--------------HHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 32 22222 2347788899999999999999988765533
No 296
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=49.89 E-value=8.8 Score=28.13 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHh
Q 014748 288 FERPRVIEACRAGGDDIHQIMLQL 311 (419)
Q Consensus 288 F~~~~A~~AL~~~~nN~e~A~d~L 311 (419)
|++.....||+.|+||+.+|+..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 678889999999999999999887
No 297
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=49.10 E-value=1.5e+02 Score=26.81 Aligned_cols=25 Identities=8% Similarity=-0.044 Sum_probs=16.1
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhh
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMG 30 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~a 30 (419)
.+...|....+.+++++|..++-.|
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3455566666777777777666555
No 298
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=48.95 E-value=1.6e+02 Score=27.54 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=63.6
Q ss_pred hhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHH
Q 014748 48 GPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKA 127 (419)
Q Consensus 48 ~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA 127 (419)
.+.....+.++|+..++ ...|...+.+|-+........+.++-..+ ..+....+..-|.+.+..|++++|
T Consensus 146 ~a~~~~~~g~~~~~~g~---~~~A~~~y~~Al~~~p~~~~~~~~~~~~~-------~~~~~~~~~nla~~~~~~g~~~~A 215 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGK---YKQALLQYKKIVSWLEYESSFSNEEAQKA-------QALRLASHLNLAMCHLKLQAFSAA 215 (336)
T ss_dssp HHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTTTCCCCCSHHHHHH-------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhhccccCChHHHHHH-------HHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44555667778887765 56666666666555433322111111111 123356667778888999999999
Q ss_pred HHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH-HHhCCCHHHHHHHHH
Q 014748 128 RNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL-RICSQDVGSAIDFLV 180 (419)
Q Consensus 128 ~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrAL-rat~gdve~Av~~L~ 180 (419)
...+..+-... +.....+ ..+|. ....|+.+.|+.++.
T Consensus 216 ~~~~~~al~~~------p~~~~a~---------~~lg~~~~~~g~~~~A~~~~~ 254 (336)
T 1p5q_A 216 IESCNKALELD------SNNEKGL---------SRRGEAHLAVNDFELARADFQ 254 (336)
T ss_dssp HHHHHHHHHHC------TTCHHHH---------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhC------CCcHHHH---------HHHHHHHHHCCCHHHHHHHHH
Confidence 99999886643 2222222 22332 234678888888874
No 299
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=47.45 E-value=2.3 Score=49.07 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHhcCCCHHHHHHhhc
Q 014748 217 IEKIKELVSI-GFEKELVAEALRRNENDSQKALDDLT 252 (419)
Q Consensus 217 ~~~l~~L~~M-GF~~~~A~~ALr~t~nnve~Al~~L~ 252 (419)
...|..|+++ |..--.||+||..++||+++|++||-
T Consensus 6 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR 42 (1289)
T 3avx_A 6 ASLVKELRERTGAGMMDCKKALTEANGDIELAIENMR 42 (1289)
T ss_dssp CSCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3458899998 66667799999999999999999983
No 300
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=47.44 E-value=2e+02 Score=27.64 Aligned_cols=153 Identities=14% Similarity=0.113 Sum_probs=82.1
Q ss_pred HHHHHhCCChHHHHHHHcCC-----cchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCC---HHHHHHHH
Q 014748 81 GIERAHGKDSSRVRLLQAGR-----HPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVP---DESLSLVM 152 (419)
Q Consensus 81 ~f~r~yG~~~~Rl~~lkg~~-----~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vd---ee~l~~Lm 152 (419)
.|.+++|-+..-+..|-..+ +....|.-|+..|+++ .+. .++....+...-.-+.....+ ...|.-|.
T Consensus 56 ~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~l-G~s---~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~ 131 (343)
T 3mva_O 56 MFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKI-VTS---DLEIVNILERSPESFFRSNNNLNLENNIKFLY 131 (343)
T ss_dssp HHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTT-SSC---HHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHc-CCC---HHHHHHHHHHCCHHHhCCChHhhHHHHHHHHH
Confidence 56679998888887665221 2345688888888864 323 234444444443312111111 24678999
Q ss_pred hCCCCHHHHHHHHHHh----CCCHHH---HHHHHHhchhhhhhhhhhhHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHHh
Q 014748 153 SMGFKEQDAKRALRIC----SQDVGS---AIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVS 225 (419)
Q Consensus 153 eMGF~~~~ArrALrat----~gdve~---Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~t~~~~~v~~~~l~~L~~ 225 (419)
++|++..+..+.+..+ ..+++. .++|+.+-.-+.....+...-...-.+.+.-.+.+ ...+ ...+..|.+
T Consensus 132 ~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s--~~~i-~~~v~fL~~ 208 (343)
T 3mva_O 132 SVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS--TKRV-KANIEFLRS 208 (343)
T ss_dssp HTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC--HHHH-HHHHHHHHH
T ss_pred HhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC--HHHH-HHHHHHHHH
Confidence 9999999999988764 345654 77777653211000000000000000111111111 0011 136778884
Q ss_pred -CCCCHHHHHHHHHhc
Q 014748 226 -IGFEKELVAEALRRN 240 (419)
Q Consensus 226 -MGF~~~~A~~ALr~t 240 (419)
+||+++.+..++...
T Consensus 209 ~~G~~~~~~~~~i~~~ 224 (343)
T 3mva_O 209 TFNLNSEELLVLICGP 224 (343)
T ss_dssp HSCCCHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHhcC
Confidence 999998877776653
No 301
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=47.13 E-value=59 Score=27.32 Aligned_cols=61 Identities=18% Similarity=-0.013 Sum_probs=43.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae 79 (419)
..++..|..+++.++|++|+.++-.|=+... +.+-..+-+..||+.+++ ...|...+.+|-
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al 149 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-----------NNVKALYKLGVANMYFGF---LEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----------ccHHHHHHHHHHHHHccc---HHHHHHHHHHHH
Confidence 5678899999999999999999887765422 233445667888888876 345555554443
No 302
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=45.54 E-value=49 Score=25.57 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=33.9
Q ss_pred HHHHHHhhcCCcchhHHhhhhhHHhhhhhccchHHHHHHHHhCCCCHHHHHHHHHHcCC
Q 014748 244 SQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAGGD 302 (419)
Q Consensus 244 ve~Al~~L~npd~~~~L~~~~~~~~~~~~~~~d~~~I~~L~~MGF~~~~A~~AL~~~~n 302 (419)
++.|+.+|.||... .++-...+.=|.+=|.+.+....||+..+.
T Consensus 18 i~~Av~FLqdp~V~---------------~sp~~~K~~FL~sKGLt~eEI~~Al~ra~~ 61 (70)
T 2w84_A 18 IATAVKFLQNSRVR---------------QSPLATRRAFLKKKGLTDEEIDMAFQQSGT 61 (70)
T ss_dssp HHHHHHHHCSTTGG---------------GSCHHHHHHHHHHTTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHhCChhhh---------------hCCHHHHHHHHHHcCCCHHHHHHHHHHccC
Confidence 57778889998741 123445678899999999999999988765
No 303
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=45.18 E-value=1e+02 Score=30.00 Aligned_cols=51 Identities=16% Similarity=-0.020 Sum_probs=36.9
Q ss_pred hhhhHhHHHHHHhhc-hHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCC
Q 014748 5 LMLHANAKSLIKRHM-YKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDIS 66 (419)
Q Consensus 5 ~~lhek~r~~~~~~~-y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~ 66 (419)
-.++-+|..+++.++ |++|+.++-.|=+. =-+.+..-.-..|||+.+++..
T Consensus 132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-----------~P~~~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----------QPKNYQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHccCHH
Confidence 356788999999996 99999988765332 2234444566788999887764
No 304
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=50.91 E-value=4.5 Score=34.69 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=31.6
Q ss_pred HHHHHHHhC-CCC-HHHHHHHHHhcCCCHHHHHHhhcC
Q 014748 218 EKIKELVSI-GFE-KELVAEALRRNENDSQKALDDLTN 253 (419)
Q Consensus 218 ~~l~~L~~M-GF~-~~~A~~ALr~t~nnve~Al~~L~n 253 (419)
-.|++|.+. |.+ ......||+..+||+..|+.+|++
T Consensus 20 ~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 20 MLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 378999999 876 777889999999999999999954
No 305
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=44.66 E-value=21 Score=32.71 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 014748 145 DESLSLVMSMGFKEQDAKRALRIC 168 (419)
Q Consensus 145 ee~l~~LmeMGF~~~~ArrALrat 168 (419)
+++++.|+.+||+..+|++|+...
T Consensus 161 ~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 579999999999999999999986
No 306
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=44.61 E-value=11 Score=29.60 Aligned_cols=24 Identities=4% Similarity=0.080 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHh
Q 014748 288 FERPRVIEACRAGGDDIHQIMLQL 311 (419)
Q Consensus 288 F~~~~A~~AL~~~~nN~e~A~d~L 311 (419)
|++....+||+.|+||+.+|+..|
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 567778899999999999999987
No 307
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=43.98 E-value=1.6e+02 Score=25.47 Aligned_cols=72 Identities=21% Similarity=0.204 Sum_probs=43.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhcCCC-HHHHHHhhcCCcchhHHhhhhhHHhhhhhccchHHHHHHHHhCCCCHHHHHHH
Q 014748 218 EKIKELVSIGFEKELVAEALRRNEND-SQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEA 296 (419)
Q Consensus 218 ~~l~~L~~MGF~~~~A~~ALr~t~nn-ve~Al~~L~npd~~~~L~~~~~~~~~~~~~~~d~~~I~~L~~MGF~~~~A~~A 296 (419)
...+.|..-|++.+.+..||.....+ .+.|..++. ..+... .......-...+.-|+.=||+.+.+..+
T Consensus 86 ~I~~eL~~KGI~~~~I~~al~~~~~de~e~a~~l~~---------Kk~~~~-~~~~~~~k~K~~~~L~rrGF~~~~I~~~ 155 (162)
T 3dfg_A 86 HIRAELGTHGLDSDAVSAAMATFEGDWTENALDLIR---------RRFGED-GPVDLAQRRKAADLLARRGFDGNSIRLA 155 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTTCCSCHHHHHHHHHH---------HHHCTT-CCCSHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCcHhHHHHHHHHHH---------HhcCCC-CCCCHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 45567888899999999998876544 333433321 000000 0000001234567899999999999998
Q ss_pred HHH
Q 014748 297 CRA 299 (419)
Q Consensus 297 L~~ 299 (419)
+..
T Consensus 156 l~~ 158 (162)
T 3dfg_A 156 TRF 158 (162)
T ss_dssp TTC
T ss_pred Hhc
Confidence 753
No 308
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.49 E-value=1.6e+02 Score=29.46 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=70.6
Q ss_pred HHHHHHhhchHHHHHHHHhhh-hhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCC
Q 014748 11 AKSLIKRHMYKDALEVLTMGE-EAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKD 89 (419)
Q Consensus 11 ~r~~~~~~~y~~aL~~ll~ad-e~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~ 89 (419)
++-....|+|.+|+.+|.+-- |.|...+... .|+ +.|-++-.|+..+|. +.|+.-+.++...+...+. +
T Consensus 144 a~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~--kve----~~l~q~rl~l~~~d~---~~a~~~~~ki~~~~~~~~~-~ 213 (445)
T 4b4t_P 144 VEIKKEEGKIDEAADILCELQVETYGSMEMSE--KIQ----FILEQMELSILKGDY---SQATVLSRKILKKTFKNPK-Y 213 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH--HHH----HHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHSSC-C
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhcccHHH--HHH----HHHHHHHHHHHCCCH---HHHHHHHHHHHHhhcccCC-c
Confidence 556678899999999987743 3444433321 122 346688889998875 6666677777665555444 1
Q ss_pred hHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhH
Q 014748 90 SSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSA 134 (419)
Q Consensus 90 ~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a 134 (419)
..+-++++.+.|++..|.+++-+|..++-.+
T Consensus 214 --------------~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 214 --------------ESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2477889999999999999999999877655
No 309
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=43.44 E-value=50 Score=24.22 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=32.0
Q ss_pred HHHHHHhhcCCcchhHHhhhhhHHhhhhhccchHHHHHHHHhCCCCHHHHHHHHHHc
Q 014748 244 SQKALDDLTNPESNSAIQLYIESRKRKRCRQAADAKIEQLVAMGFERPRVIEACRAG 300 (419)
Q Consensus 244 ve~Al~~L~npd~~~~L~~~~~~~~~~~~~~~d~~~I~~L~~MGF~~~~A~~AL~~~ 300 (419)
++.|+.+|.||... .++-...+.=|.+=|.+.+....||+.+
T Consensus 13 i~~Av~FL~dp~V~---------------~sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 13 IATAVKFLQNSRVR---------------QSPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHCTTGG---------------GSCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHhCChhhh---------------cCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 67888889888742 1234456788999999999999999753
No 310
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=41.78 E-value=37 Score=31.39 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=40.1
Q ss_pred CCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCC-CCHHHHHHHHhCCCCHHHHHHHH
Q 014748 87 GKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQ-VPDESLSLVMSMGFKEQDAKRAL 165 (419)
Q Consensus 87 G~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~-vdee~l~~LmeMGF~~~~ArrAL 165 (419)
-.|++||..+.| -++-.+-.+.++|-..+..+ . ... ... ..-. .-+++++.|+.+||+..+|++|+
T Consensus 119 ~~d~~~L~~vpG-IG~KtA~rIi~elk~kl~~~-~---~~~------~~~--~~~~~~~~ea~~AL~~LGy~~~ea~~av 185 (212)
T 2ztd_A 119 DGNVAALTRVPG-IGKRGAERMVLELRDKVGVA-A---TGG------ALS--TNGHAVRSPVVEALVGLGFAAKQAEEAT 185 (212)
T ss_dssp TTCHHHHHTSTT-CCHHHHHHHHHHHTTTCC-------------------------CCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hCCHHHHhhCCC-CCHHHHHHHHHHHHHhhccc-c---ccc------ccc--ccCcccHHHHHHHHHHcCCCHHHHHHHH
Confidence 448888877765 34445555566654444221 0 000 000 0001 22679999999999999999999
Q ss_pred HHh
Q 014748 166 RIC 168 (419)
Q Consensus 166 rat 168 (419)
...
T Consensus 186 ~~~ 188 (212)
T 2ztd_A 186 DTV 188 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 311
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=41.39 E-value=46 Score=25.24 Aligned_cols=67 Identities=22% Similarity=0.082 Sum_probs=42.1
Q ss_pred chhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhH
Q 014748 47 NGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDK 126 (419)
Q Consensus 47 N~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~e 126 (419)
+.+.....+.+||+.+++ ..+|...+.++-+. ++ .. ...+..-|.+.+..|++++
T Consensus 17 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~-------~p---------~~------~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQ---FDAALPHLRAALDF-------DP---------TY------SVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-------CT---------TC------HHHHHHHHHHHHHHTCHHH
T ss_pred CcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHH-------CC---------Cc------HHHHHHHHHHHHHcCCHHH
Confidence 345667788999998775 45555555444332 11 11 1122344777778899999
Q ss_pred HHHHhHhHHhhh
Q 014748 127 ARNALTSAQAKF 138 (419)
Q Consensus 127 A~~~L~~a~~~~ 138 (419)
|...+..+-...
T Consensus 72 A~~~~~~al~~~ 83 (115)
T 2kat_A 72 ARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999988775543
No 312
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.14 E-value=27 Score=27.43 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=30.4
Q ss_pred HHHHHHHhC-CC-CHHHHHHHHHhcCCCHHHHHHhhcC
Q 014748 218 EKIKELVSI-GF-EKELVAEALRRNENDSQKALDDLTN 253 (419)
Q Consensus 218 ~~l~~L~~M-GF-~~~~A~~ALr~t~nnve~Al~~L~n 253 (419)
-.|++|++. |. +......||+..+||+..|+-+|++
T Consensus 26 ~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 26 TFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 479999999 85 4566788999999999999999954
No 313
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=40.72 E-value=45 Score=39.53 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=57.1
Q ss_pred HHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchh-------hhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 014748 11 AKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGP-------LLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (419)
Q Consensus 11 ~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a-------~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (419)
|..++..++|+||..++-.++. +..--..+++.+.||- =+..+-||--+ ...=.+.-+...|-.+|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqL-----AKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQL-----AKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHH-----HHHHHhCCCHHHHHHHHH
Confidence 7778888888888877776642 1111123444443332 13445566422 111122223444455555
Q ss_pred HHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCH
Q 014748 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPD 145 (419)
Q Consensus 84 r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vde 145 (419)
++ ++++-+.. -+-.+.+.|++++|..+|.+|+.....-.+|.
T Consensus 1130 KA--dD~say~e------------------Va~~~~~lGkyEEAIeyL~mArk~~~e~~Idt 1171 (1630)
T 1xi4_A 1130 KA--DDPSSYME------------------VVQAANTSGNWEELVKYLQMARKKARESYVET 1171 (1630)
T ss_pred hc--CChHHHHH------------------HHHHHHHcCCHHHHHHHHHHHHhhcccccccH
Confidence 54 23333322 23334567889999999988876554433444
No 314
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=40.72 E-value=61 Score=31.36 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=44.6
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
..+...|..+++.++|++|+.++-.|=+. ++ +.+-...-+.+||+.+++ ..+|...|++|-+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~----~p-------~~~~a~~~lg~~~~~~g~---~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEI----DP-------SNTKALYRRAQGWQGLKE---YDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CT-------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh----Cc-------hhHHHHHHHHHHHHHccC---HHHHHHHHHHHHH
Confidence 45677899999999999999998766542 22 334455678899998875 5666666666544
No 315
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=40.05 E-value=39 Score=26.27 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=26.2
Q ss_pred HHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHH
Q 014748 112 LLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESL 148 (419)
Q Consensus 112 LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l 148 (419)
.+-|.++|.+|++++|..+++..-+..+. .++-..|
T Consensus 47 ~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i 82 (93)
T 3bee_A 47 SLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTI 82 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHH
Confidence 34489999999999999999887665554 4443333
No 316
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=38.56 E-value=53 Score=33.69 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=0.0
Q ss_pred hHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 8 HANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 8 hek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
...|++.++++++++|...+..++ |+. --..|+.++.. +...++|...|+++++
T Consensus 36 s~La~A~l~~g~~~eAIdsfika~---------------D~~-~y~~V~~~ae~---~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 36 SQLAKAQLQKGMVKEAIDSYIKAD---------------DPS-SYMEVVQAANT---SGNWEELVKYLQMARK 89 (449)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCC---------------CHH-HHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 457899999999999988886542 222 12333444333 4455666666666664
No 317
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=37.86 E-value=1.1e+02 Score=24.55 Aligned_cols=62 Identities=10% Similarity=-0.040 Sum_probs=42.9
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
..++-.|..+++.++|++|+..+-.|=+. --+++-.-.-+.+||+.+++ ..+|..-+.+|-.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKR-----------EETNEKALFRRAKARIAAWK---LDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------STTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----------CCcchHHHHHHHHHHHHHhc---HHHHHHHHHHHHh
Confidence 45677899999999999999988766443 12334445567888888865 4566655555543
No 318
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=37.84 E-value=31 Score=24.25 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHHHHHHHhC-CCCH-HHHHHHHHhcCCCHHHHHH
Q 014748 217 IEKIKELVSI-GFEK-ELVAEALRRNENDSQKALD 249 (419)
Q Consensus 217 ~~~l~~L~~M-GF~~-~~A~~ALr~t~nnve~Al~ 249 (419)
.+.|.+..++ |-+. ..|+.=|..++.|++.|+.
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 3568888888 8885 9999999999999999987
No 319
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=37.00 E-value=38 Score=28.35 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=33.0
Q ss_pred HHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHH
Q 014748 11 AKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRL 75 (419)
Q Consensus 11 ~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL 75 (419)
--++|.||.|.+||.++- ..|-|.| |-|.-+|=--+...+.+..||
T Consensus 47 ~sSLmNrG~Yq~Al~l~~------~~c~pdl-------------epw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGN------KLAYPDL-------------EPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp HHHHHHTTCHHHHHHHHT------TSCCGGG-------------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcC------CCCCchH-------------HHHHHHHHHhcccHHHHHHHH
Confidence 347899999999998875 4676655 457666655556666666666
No 320
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=36.14 E-value=40 Score=28.19 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=35.6
Q ss_pred HHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHH
Q 014748 11 AKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLR 76 (419)
Q Consensus 11 ~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~ 76 (419)
--++|.||.|.+||.++- ..|-|.| |-|.-+|=--+...+.+..||.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~------~~c~pdl-------------epw~ALce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAH------GNPWPAL-------------EPWFALCEWHLGLGAALDRRLA 92 (115)
T ss_dssp HHHHHHTTCHHHHHGGGT------TCCCGGG-------------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcC------CCCCchH-------------HHHHHHHHHhcccHHHHHHHHH
Confidence 347899999999998764 4676655 4687777777777788887773
No 321
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=35.58 E-value=60 Score=22.84 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=23.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhh
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEA 33 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~ 33 (419)
.++..|..+++.++|++|+.++-.|=+.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4667899999999999999998877554
No 322
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=35.44 E-value=1.2e+02 Score=27.06 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=13.2
Q ss_pred HHHHhhchHHHHHHHHh
Q 014748 13 SLIKRHMYKDALEVLTM 29 (419)
Q Consensus 13 ~~~~~~~y~~aL~~ll~ 29 (419)
-+|+-|+|+.|+.+.-+
T Consensus 14 LAL~lg~l~~A~e~a~~ 30 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKK 30 (177)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 36788999999988644
No 323
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=35.11 E-value=88 Score=22.59 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=34.1
Q ss_pred CCCCHHHHHH--HHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhchh
Q 014748 141 LQVPDESLSL--VMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (419)
Q Consensus 141 l~vdee~l~~--LmeMGF~~~~ArrALrat~gdve~Av~~L~e~~~ 184 (419)
-.|+++.|++ -+=-|=+++--+|-|+.++=||..|++-|+++-+
T Consensus 6 ~~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T 2qho_B 6 SVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp GGSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC---
T ss_pred ccCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcccc
Confidence 3567776763 4446999999999999999999999999987643
No 324
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=33.93 E-value=38 Score=30.94 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=22.6
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHc
Q 014748 276 ADAKIEQLVAMGFERPRVIEACRAG 300 (419)
Q Consensus 276 d~~~I~~L~~MGF~~~~A~~AL~~~ 300 (419)
..++++.|++|||++..|..|+...
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3579999999999999999999876
No 325
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=33.11 E-value=95 Score=25.74 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=27.6
Q ss_pred HhCCCCHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 014748 284 VAMGFERPRVIEACRAGGDDIHQIMLQLLGEP 315 (419)
Q Consensus 284 ~~MGF~~~~A~~AL~~~~nN~e~A~d~Ll~~~ 315 (419)
....-+-..+.+||..+.|+++.|..||++..
T Consensus 22 eef~~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 22 EKFNLDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHhhhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 34577888899999999999999999999754
No 326
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=33.10 E-value=3.6e+02 Score=26.43 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=51.5
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 014748 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (419)
Q Consensus 7 lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (419)
.+..|....+.++|++|..++-.|=+ +++. |.+ .+|+.+.. +-.-..++..|+..|++..
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~------~~~-----~~~~~~~~-----~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLA----IEDI------DPT-----LVYIQYMK-----FARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----SSSS------CHH-----HHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhC----cccc------Cch-----HHHHHHHH-----HHHHhcCHHHHHHHHHHHH
Confidence 34455666677777777776655422 1221 222 25654421 1112345777888888876
Q ss_pred CCChHHHHHHHcCCcchhhHHHHHHHHhHhhh-hccCChhHHHHHhHhHHhhh
Q 014748 87 GKDSSRVRLLQAGRHPELALHLRMELLEGVAA-YHSGQFDKARNALTSAQAKF 138 (419)
Q Consensus 87 G~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~-~~~g~~~eA~~~L~~a~~~~ 138 (419)
...+. . ..+++-.+.+. ++.|+.++|+..++.+-...
T Consensus 384 ~~~~~---------~------~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 384 EDART---------R------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp TCTTC---------C------THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hccCC---------c------hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 63221 1 11122222222 24788899998888875554
No 327
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=32.74 E-value=79 Score=33.17 Aligned_cols=94 Identities=10% Similarity=-0.051 Sum_probs=61.7
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (419)
.++..|..+++.++|++|+..+-.|=+. --+++-..+.+.+||+.+++... -.. |++
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l-----------~P~~~~~~~~lg~~~~~~g~~~~-~~~----------~~~- 525 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDT-----------FPGELAPKLALAATAELAGNTDE-HKF----------YQT- 525 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------STTCSHHHHHHHHHHHHHTCCCT-TCH----------HHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCChHHHHHHHHHHHHcCChHH-HHH----------HHH-
Confidence 5678899999999999999988765443 23445566788999999998864 111 111
Q ss_pred hCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHh
Q 014748 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (419)
Q Consensus 86 yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~ 136 (419)
...+. .... ..+..-|.+.+..|++++|...+.++-+
T Consensus 526 -------al~~~-P~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 526 -------VWSTN-DGVI------SAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp -------HHHHC-TTCH------HHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred -------HHHhC-CchH------HHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 11111 1111 1233447777789999999998877643
No 328
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=31.66 E-value=3.7e+02 Score=26.16 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=30.4
Q ss_pred ccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC-----CHHHHHHHHHhc
Q 014748 120 HSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQ-----DVGSAIDFLVEE 182 (419)
Q Consensus 120 ~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrALrat~g-----dve~Av~~L~e~ 182 (419)
..|++++|...+.++- +.|++......|.....| |.+.|+.|+..-
T Consensus 263 ~~~d~~~A~~~~~~Aa-----------------~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 263 ELGDVEQMMKYLDNGR-----------------AADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp GGCCHHHHHHHHHHHH-----------------HTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHH-----------------HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 3678888887776653 345555566666555455 888888887544
No 329
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=30.96 E-value=3.9e+02 Score=26.16 Aligned_cols=110 Identities=14% Similarity=0.042 Sum_probs=67.2
Q ss_pred chhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhH
Q 014748 47 NGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDK 126 (419)
Q Consensus 47 N~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~e 126 (419)
+++-......++|+..++ ...|...+.+|-+..........+.-. .-..+...+++-.|.+.+..|++++
T Consensus 266 ~~a~~~~~~G~~~~~~g~---~~~A~~~y~~Al~~~p~~~~~~~~~~~-------~~~~~~~~~~~nla~~~~~~g~~~~ 335 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGK---YMQAVIQYGKIVSWLEMEYGLSEKESK-------ASESFLLAAFLNLAMCYLKLREYTK 335 (457)
T ss_dssp HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTCCSCCHHHHH-------HHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHhcccccCChHHHH-------HHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 344455567778887654 677777777776655443322211111 1123456777778889999999999
Q ss_pred HHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHH-HHhCCCHHHHHHHHHh
Q 014748 127 ARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL-RICSQDVGSAIDFLVE 181 (419)
Q Consensus 127 A~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrAL-rat~gdve~Av~~L~e 181 (419)
|...+..+-... +.....+ -++|. +...|+.+.|+.++..
T Consensus 336 A~~~~~~al~~~------p~~~~a~---------~~~g~a~~~~g~~~~A~~~~~~ 376 (457)
T 1kt0_A 336 AVECCDKALGLD------SANEKGL---------YRRGEAQLLMNEFESAKGDFEK 376 (457)
T ss_dssp HHHHHHHHHHHS------TTCHHHH---------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC------CccHHHH---------HHHHHHHHHccCHHHHHHHHHH
Confidence 999999886543 2222222 23332 2335788888888743
No 330
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=30.90 E-value=64 Score=30.47 Aligned_cols=59 Identities=20% Similarity=0.098 Sum_probs=40.4
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~a 78 (419)
.++-.|..+++.++|++|+.++-.|=+.. .+++-...-+.+||+.+++ .+.|...|.+|
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~a~~~lg~a~~~~g~---~~~A~~~l~~a 290 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-----------EKNPKALFRRGKAKAELGQ---MDSARDDFRKA 290 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHTTTC---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 56778999999999999999887664432 2344555678889988765 34444444333
No 331
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=30.89 E-value=97 Score=24.23 Aligned_cols=49 Identities=8% Similarity=-0.044 Sum_probs=34.3
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCC
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRD 64 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~ 64 (419)
-.++-.|..+++.++|++|+..+-.|=+. +| +++-....+..||..+++
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~P-------~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 52 EAWRSLGLTQAENEKDGLAIIALNHARML----DP-------KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT-------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-------CCHHHHHHHHHHHHHcCC
Confidence 35677899999999999999998766443 22 223344567778877653
No 332
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=30.68 E-value=63 Score=29.79 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.9
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHc
Q 014748 276 ADAKIEQLVAMGFERPRVIEACRAG 300 (419)
Q Consensus 276 d~~~I~~L~~MGF~~~~A~~AL~~~ 300 (419)
..++++.|++|||++..|..|+...
T Consensus 164 ~~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 164 RSPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3578999999999999999998764
No 333
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=30.42 E-value=16 Score=28.68 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHh
Q 014748 288 FERPRVIEACRAGGDDIHQIMLQL 311 (419)
Q Consensus 288 F~~~~A~~AL~~~~nN~e~A~d~L 311 (419)
|++.....||+.|+||+..|+..|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 677888999999999999999887
No 334
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=30.39 E-value=1.4e+02 Score=29.95 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=99.4
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCCh----hhh-hhccchh------hhhhh-----HHHHHHHhCCCCCHH
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDP----KVL-EFVDNGP------LLQID-----MVWCYFMLRDISWLS 69 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~----~~l-~~vDN~a------~L~lD-----ivWcy~~l~~~~~l~ 69 (419)
.+.+-|+-+.+++++++-..++-..=..|+...- |++ ..||.|. =+|++ |=||--- ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~r~fl- 97 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE--KRTFL- 97 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT--TCHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH--HHHHH-
Confidence 3567789999999999999999999999987653 221 2223221 12222 2344311 11111
Q ss_pred HHHHHH--HHHHHHHHHHhCCChHHHHH----HHc--CCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccC
Q 014748 70 EAGIRL--RKAREGIERAHGKDSSRVRL----LQA--GRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQL 141 (419)
Q Consensus 70 dA~~rL--~~ae~~f~r~yG~~~~Rl~~----lkg--~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l 141 (419)
+.+| ..|.-.| -.| +..+... |.- .......+.+-.++++.-+.+..||..+++..+++|+.-...+
T Consensus 98 --r~~l~~kL~~l~~--~~~-~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 98 --RQSLEARLIALYF--DTA-LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp --HHHHHHHHHHHHH--HTT-CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHH--Hhh-hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 1122 2222111 223 3333211 111 1112268899999999999999999999999999998877777
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHH--hCCCHHHHHHHHHhch
Q 014748 142 QVPDESLSLVMSMGFKEQDAKRALRI--CSQDVGSAIDFLVEEK 183 (419)
Q Consensus 142 ~vdee~l~~LmeMGF~~~~ArrALra--t~gdve~Av~~L~e~~ 183 (419)
.+++.....+.. --|+.+ ..+|...|..+.++-.
T Consensus 173 ~~~p~i~a~i~~--------~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 173 YCPPKVQGALDL--------QSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp CCCHHHHHHHHH--------HHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH--------HhhHHHHHhccCHHHHHHHHHHHH
Confidence 677766666654 335554 4678888888887654
No 335
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=30.34 E-value=1.7e+02 Score=22.35 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=40.2
Q ss_pred HhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHh---CCCHHHHHHHHHh
Q 014748 115 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRIC---SQDVGSAIDFLVE 181 (419)
Q Consensus 115 gvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrALrat---~gdve~Av~~L~e 181 (419)
|.++|.+|++.+|..-+..|-.....-. ..|++...+-..|-.| -|+.+.|+.++..
T Consensus 12 G~~~~~~~~y~~A~~W~~~Al~~~~~~~----------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~ 71 (104)
T 2v5f_A 12 GKVAYTEADYYHTELWMEQALRQLDEGE----------ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (104)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHhhhccC----------CCcccHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6789999999999999988865442211 1366666666655444 5789999997643
No 336
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=29.86 E-value=71 Score=23.98 Aligned_cols=64 Identities=13% Similarity=-0.009 Sum_probs=40.1
Q ss_pred hhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHH
Q 014748 48 GPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKA 127 (419)
Q Consensus 48 ~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA 127 (419)
.+....-+.+||+.+++ ..+|...+.+|-+. + ...+ ..+..-|.+.+..|++++|
T Consensus 6 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~-------~---------p~~~------~a~~~lg~~~~~~g~~~~A 60 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDN---ASRALALFEELVET-------D---------PDYV------GTYYHLGKLYERLDRTDDA 60 (100)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-------S---------TTCT------HHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh-------C---------CCcH------HHHHHHHHHHHHcCCHHHH
Confidence 34556678888988765 45565555554332 1 1111 1334457778899999999
Q ss_pred HHHhHhHHh
Q 014748 128 RNALTSAQA 136 (419)
Q Consensus 128 ~~~L~~a~~ 136 (419)
...+.++-.
T Consensus 61 ~~~~~~al~ 69 (100)
T 3ma5_A 61 IDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988887644
No 337
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.83 E-value=1.3e+02 Score=29.79 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=60.8
Q ss_pred HhhchHHHHHHHHhhhhhhccCChh------hhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCC
Q 014748 16 KRHMYKDALEVLTMGEEAFSLCDPK------VLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKD 89 (419)
Q Consensus 16 ~~~~y~~aL~~ll~ade~F~~C~~~------~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~ 89 (419)
..+++.+|+.+|...=..|..++++ .-...+=+-++.+=|+.+|+.+.| ++.|+..|.+|+..+...-|.
T Consensus 88 ~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d---~~~a~~~l~~~~~~l~~~~~~- 163 (393)
T 4b4t_O 88 DSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKND---LVKARDLLDDLEKTLDKKDSI- 163 (393)
T ss_dssp HTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHSCCS-
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhhhccCCc-
Confidence 4568899999997765555443332 222333355678899999999876 679999999999887664442
Q ss_pred hHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHH
Q 014748 90 SSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKAR 128 (419)
Q Consensus 90 ~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~ 128 (419)
+..+.-++|...+...=..+++..++
T Consensus 164 -------------~~~v~~~~y~~~~~~~~~~~~~a~~y 189 (393)
T 4b4t_O 164 -------------PLRITNSFYSTNSQYFKFKNDFNSFY 189 (393)
T ss_dssp -------------SSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------cHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444455544443333445555444
No 338
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=29.27 E-value=28 Score=28.18 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHh
Q 014748 288 FERPRVIEACRAGGDDIHQIMLQL 311 (419)
Q Consensus 288 F~~~~A~~AL~~~~nN~e~A~d~L 311 (419)
|++.....||+.|+||+.+|+..|
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 567788899999999999999987
No 339
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=28.95 E-value=82 Score=25.07 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 014748 146 ESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (419)
Q Consensus 146 e~l~~LmeMGF~~~~ArrALrat~gdve~Av~~L~e~ 182 (419)
+.|...++=-.+++.-++|.-.++-|+++|+++|++.
T Consensus 39 d~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 39 DHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3455555556899999999999999999999999865
No 340
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=28.01 E-value=28 Score=25.25 Aligned_cols=23 Identities=9% Similarity=0.041 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHh
Q 014748 288 FERPRVIEACRAGGDDIHQIMLQL 311 (419)
Q Consensus 288 F~~~~A~~AL~~~~nN~e~A~d~L 311 (419)
|++.....||+.| ||..+|+..|
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh
Confidence 5677889999999 8999999887
No 341
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=27.77 E-value=1.2e+02 Score=26.48 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=24.3
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhh
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEA 33 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~ 33 (419)
..++-+|.++.+.++|++|+..+-.|=+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 46788999999999999999987666443
No 342
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=27.27 E-value=1.3e+02 Score=29.92 Aligned_cols=62 Identities=13% Similarity=-0.017 Sum_probs=43.8
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 014748 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (419)
Q Consensus 5 ~~lhek~r~~~~~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~l~~~~~l~dA~~rL~~ae~ 80 (419)
..+...|..+++.++|++|+..+..|=+. ++ +++-...-+.+||+.+++ ..+|...+.+|-+
T Consensus 41 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p-------~~~~~~~~lg~~~~~~g~---~~eA~~~~~~al~ 102 (477)
T 1wao_1 41 IYYGNRSLAYLRTECYGYALGDATRAIEL----DK-------KYIKGYYRRAASNMALGK---FRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS----CT-------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CC-------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 45677899999999999999999877544 22 334455667889988764 4555555555543
No 343
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=26.71 E-value=83 Score=27.18 Aligned_cols=50 Identities=22% Similarity=0.064 Sum_probs=33.7
Q ss_pred HhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCCHHHHHHHHHHhCC----CHHHHHHHHHh
Q 014748 115 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQ----DVGSAIDFLVE 181 (419)
Q Consensus 115 gvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~~~~ArrALrat~g----dve~Av~~L~e 181 (419)
|.+.+..|++++|...+.++-+ .|++......|.....+ |.+.|+.|+..
T Consensus 25 g~~~~~~~~~~~A~~~~~~a~~-----------------~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 25 ADTWVSSGDYQKAEYWAQKAAA-----------------QGDGDALALLAQLKIRNPQQADYPQARQLAEK 78 (212)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHH-----------------cCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4445567899999999887733 35555555555554445 78888888743
No 344
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=25.20 E-value=49 Score=26.98 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.0
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhh
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMG 30 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~a 30 (419)
.+-.+||.+.+-++|.+||.+|-.+
T Consensus 55 ~~i~eak~~y~~~ny~ea~~l~~k~ 79 (106)
T 2vkj_A 55 SLIAEGKDLFETANYGEALVFFEKA 79 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4567899999999999999988544
No 345
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=24.95 E-value=4.7e+02 Score=25.21 Aligned_cols=123 Identities=13% Similarity=0.034 Sum_probs=0.0
Q ss_pred hhhHhHHHHHH----hhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHH----hCCCCCHHHHHHHHHH
Q 014748 6 MLHANAKSLIK----RHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFM----LRDISWLSEAGIRLRK 77 (419)
Q Consensus 6 ~lhek~r~~~~----~~~y~~aL~~ll~ade~F~~C~~~~l~~vDN~a~L~lDivWcy~~----l~~~~~l~dA~~rL~~ 77 (419)
.++.-|..... .++|+.|+.++..| ++. +++--+.-+.++|+. .+| .+.|...+.+
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a-----------~~~--~~~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~ 104 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRA-----------AEQ--GYTPAEYVLGLRYMNGEGVPQD---YAQAVIWYKK 104 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHH-----------HHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHH-----------HHC--CCHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHH
Q ss_pred HHHHHHHHhCCChHHHHHHHcCCcchhhHHHHHHHHhHhhhhccCChhHHHHHhHhHHhhhccCCCCHHHHHHHHhCCCC
Q 014748 78 AREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFK 157 (419)
Q Consensus 78 ae~~f~r~yG~~~~Rl~~lkg~~~~E~aL~lRL~LLqgvv~~~~g~~~eA~~~L~~a~~~~~~l~vdee~l~~LmeMGF~ 157 (419)
+-+ ...++.-..|-...++|. -..+++++|...+.++-+. |++
T Consensus 105 a~~------------------~~~~~a~~~Lg~~y~~g~--g~~~~~~~A~~~~~~a~~~-----------------~~~ 147 (490)
T 2xm6_A 105 AAL------------------KGLPQAQQNLGVMYHEGN--GVKVDKAESVKWFRLAAEQ-----------------GRD 147 (490)
T ss_dssp HHH------------------TTCHHHHHHHHHHHHHTS--SSCCCHHHHHHHHHHHHHT-----------------TCH
T ss_pred HHH------------------CCCHHHHHHHHHHHHcCC--CCCCCHHHHHHHHHHHHHC-----------------CCH
Q ss_pred HHHHHHHHHHh-----CCCHHHHHHHHHh
Q 014748 158 EQDAKRALRIC-----SQDVGSAIDFLVE 181 (419)
Q Consensus 158 ~~~ArrALrat-----~gdve~Av~~L~e 181 (419)
......|.... .+|.+.|+.|+..
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHH
No 346
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=23.83 E-value=6.1e+02 Score=26.10 Aligned_cols=102 Identities=14% Similarity=0.302 Sum_probs=62.1
Q ss_pred HhHhHHhhhccCCCCHHHHHHHH-hCCCCHHHHHH-----HH-------HHhCCCHHHHHHHHHhchhhhhhhhhhhHHH
Q 014748 130 ALTSAQAKFFQLQVPDESLSLVM-SMGFKEQDAKR-----AL-------RICSQDVGSAIDFLVEEKAKRVKEREDNEQR 196 (419)
Q Consensus 130 ~L~~a~~~~~~l~vdee~l~~Lm-eMGF~~~~Arr-----AL-------rat~gdve~Av~~L~e~~~d~~~~~~~~~~~ 196 (419)
.++..+..++++ +++....++ +.|.+..+|+. ++ -..+.++..|.+||+...-.....
T Consensus 287 ~i~~i~~~lPEl--P~~~~~R~~~~ygLs~~dA~~L~~~~~~a~~fe~~~~~~~~~k~~anw~~~el~~~ln~------- 357 (478)
T 3h0l_B 287 WIEEIKKNMPEL--PDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKGIVNWLINDLLGLLRD------- 357 (478)
T ss_dssp HHHHHHHTCCCC--HHHHHHHHHHHTCCCHHHHHHHHHSHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHHH-------
T ss_pred HHHHHHHhCCCC--HHHHHHHHHhccCCCHHHHHHHHcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-------
Confidence 444445555444 456777777 58999988864 12 112458999999998654322111
Q ss_pred HHHHHHHhhcCCCCCCCcCCHHHHHHHHhC---C-CCHHHHHHHHH---hcCCCHHHHHH
Q 014748 197 RKEIMEQKRYGLTPLKKAVDIEKIKELVSI---G-FEKELVAEALR---RNENDSQKALD 249 (419)
Q Consensus 197 ~~~~~~~~~~g~t~~~~~v~~~~l~~L~~M---G-F~~~~A~~ALr---~t~nnve~Al~ 249 (419)
-+.+-....++++.+..|..+ | .+...|+..|. .++++++..++
T Consensus 358 ---------~~~~i~~~~i~p~~la~li~li~~g~Is~~~ak~vl~~~~~~~~~p~eIVe 408 (478)
T 3h0l_B 358 ---------KGISIEESPVKPEHLAELVKLIKEKVISTKIGKEVIKEMVETGKTPSQIVE 408 (478)
T ss_dssp ---------HTCCGGGCSSCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred ---------CCCCHhhcCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHH
Confidence 011222234678877777665 5 88888888775 34567776666
No 347
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=22.69 E-value=1.4e+02 Score=22.10 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=28.9
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHHhhcC
Q 014748 278 AKIEQLVAM--GFERPRVIEACRAGGDDIHQIMLQLLGE 314 (419)
Q Consensus 278 ~~I~~L~~M--GF~~~~A~~AL~~~~nN~e~A~d~Ll~~ 314 (419)
..++++.+| -++....+.-|..| |+++..++-++..
T Consensus 19 ~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 19 AMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 456666666 58899999999999 6699999988764
No 348
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.04 E-value=4.5e+02 Score=26.27 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=44.9
Q ss_pred hHhhhhccCChhHHHHHhHhHHhhhc-----cCCCCHHHHHHHHhCCC---C-----HHHHHHHHHHh--CCCHHHHHHH
Q 014748 114 EGVAAYHSGQFDKARNALTSAQAKFF-----QLQVPDESLSLVMSMGF---K-----EQDAKRALRIC--SQDVGSAIDF 178 (419)
Q Consensus 114 qgvv~~~~g~~~eA~~~L~~a~~~~~-----~l~vdee~l~~LmeMGF---~-----~~~ArrALrat--~gdve~Av~~ 178 (419)
+-++.+..|+..++...|+.+-.... .-.|+.+.|..++..-. . .-+...|+..+ ++|++.|+.|
T Consensus 198 ~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~ 277 (447)
T 3pvs_A 198 RAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYW 277 (447)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHH
Confidence 33445678998888888887644332 13578888888876532 2 12455566543 5689999999
Q ss_pred HHhc
Q 014748 179 LVEE 182 (419)
Q Consensus 179 L~e~ 182 (419)
|..-
T Consensus 278 la~m 281 (447)
T 3pvs_A 278 YARI 281 (447)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 349
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=21.57 E-value=54 Score=24.49 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCHHHHHHhh--cCCcchhHHhhhhhH
Q 014748 231 ELVAEALRRNENDSQKALDDL--TNPESNSAIQLYIES 266 (419)
Q Consensus 231 ~~A~~ALr~t~nnve~Al~~L--~npd~~~~L~~~~~~ 266 (419)
.+.|.++++++.-++.-++.| +||++.+.|+.+.+.
T Consensus 14 ~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~ 51 (61)
T 2f4m_B 14 QQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEH 51 (61)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHH
Confidence 558899999999999999988 799998888887554
No 350
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=21.34 E-value=60 Score=25.96 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=24.4
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhh
Q 014748 3 MGLMLHANAKSLIKRHMYKDALEVLTMG 30 (419)
Q Consensus 3 ~~~~lhek~r~~~~~~~y~~aL~~ll~a 30 (419)
|+-.+.+-||-++++++|-.||.++-=|
T Consensus 38 mA~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 38 RALNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6778899999999999999999987544
No 351
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=20.61 E-value=71 Score=23.20 Aligned_cols=29 Identities=14% Similarity=-0.030 Sum_probs=24.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhh
Q 014748 6 MLHANAKSLIKRHMYKDALEVLTMGEEAF 34 (419)
Q Consensus 6 ~lhek~r~~~~~~~y~~aL~~ll~ade~F 34 (419)
.++..|..+++.++|++|+..+..|=+..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56778999999999999999998876554
No 352
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=20.30 E-value=2.8e+02 Score=28.67 Aligned_cols=90 Identities=17% Similarity=0.285 Sum_probs=57.5
Q ss_pred CHHHHHHHH-hCCCCHHHHHH-----HH-------HHhCCCHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHhhcCCCC
Q 014748 144 PDESLSLVM-SMGFKEQDAKR-----AL-------RICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTP 210 (419)
Q Consensus 144 dee~l~~Lm-eMGF~~~~Arr-----AL-------rat~gdve~Av~~L~e~~~d~~~~~~~~~~~~~~~~~~~~~g~t~ 210 (419)
+++....++ +.|.+..+|+. ++ -..+.++..|.+||+...-..... -+.+-
T Consensus 303 P~~~~~R~~~eygls~~dA~~L~~~~~~a~~fe~~~~~~~~~k~~anw~~~el~~~ln~----------------~~~~i 366 (482)
T 3al0_B 303 PDEKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKVVNRPKDLSNWIMTEVLRELNE----------------RNIEI 366 (482)
T ss_dssp TTHHHHHHHHHHSCCHHHHHHHTSSHHHHHHHHHHHHHSCCHHHHHHHHHTHHHHHTTT----------------TTCCT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH----------------cCCCH
Confidence 556778887 58999988763 12 112457999999997643221111 12222
Q ss_pred CCCcCCHHHHHHHHhC---C-CCHHHHHHHHH---hcCCCHHHHHH
Q 014748 211 LKKAVDIEKIKELVSI---G-FEKELVAEALR---RNENDSQKALD 249 (419)
Q Consensus 211 ~~~~v~~~~l~~L~~M---G-F~~~~A~~ALr---~t~nnve~Al~ 249 (419)
....++++.|..|..| | .+...|+..|. .++++++..++
T Consensus 367 ~~~~i~p~~la~li~li~~g~Is~~~ak~vl~~~~~~~~~p~~IIe 412 (482)
T 3al0_B 367 TESKLTPQHFADLFKLMDEGKISIKIAKEIFPEVFETGKMPSQIVE 412 (482)
T ss_dssp TSSSCCHHHHHHHHHHHTTTSSCTTHHHHSHHHHHHHCCCHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2335788888877766 5 88888887765 34668888887
No 353
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=20.01 E-value=43 Score=25.93 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=35.7
Q ss_pred HHHHHhC-CCCHHHHHHHHHhcCCCHHHHHHhh--cCCcchhHHhhhhhHH
Q 014748 220 IKELVSI-GFEKELVAEALRRNENDSQKALDDL--TNPESNSAIQLYIESR 267 (419)
Q Consensus 220 l~~L~~M-GF~~~~A~~ALr~t~nnve~Al~~L--~npd~~~~L~~~~~~~ 267 (419)
++.|+.. -|. +.|.++++++.-++.-++.| +||++.+.|+.+.+.+
T Consensus 6 l~~Lr~~Pqf~--qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~F 54 (72)
T 1pve_A 6 LEFLRNQPQFQ--QMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHF 54 (72)
T ss_dssp TGGGTTCTTTT--THHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHH
T ss_pred HHHHHcChHHH--HHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHH
Confidence 3455555 575 48999999999999999988 7999988888875543
Done!