Query 014749
Match_columns 419
No_of_seqs 140 out of 1252
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00219 Sec61 alpha subunit; 100.0 5.8E-90 1.3E-94 717.2 38.2 403 3-405 3-405 (474)
2 KOG1373 Transport protein Sec6 100.0 1.5E-88 3.2E-93 664.7 37.3 404 2-405 1-404 (476)
3 PRK08568 preprotein translocas 100.0 6.2E-85 1.3E-89 678.6 37.1 383 5-405 1-385 (462)
4 COG0201 SecY Preprotein transl 100.0 8.3E-76 1.8E-80 601.2 27.6 336 13-405 1-354 (436)
5 TIGR00967 3a0501s007 preprotei 100.0 1.1E-70 2.4E-75 565.6 26.2 319 31-405 1-335 (410)
6 PRK09204 secY preprotein trans 100.0 2.1E-70 4.5E-75 565.4 27.7 318 22-405 6-349 (426)
7 CHL00161 secY preprotein trans 100.0 4.5E-69 9.7E-74 554.4 29.4 318 23-405 3-337 (417)
8 PRK12907 secY preprotein trans 100.0 2.2E-68 4.7E-73 549.7 29.4 318 25-405 9-351 (434)
9 PRK12417 secY preprotein trans 100.0 8.3E-66 1.8E-70 527.1 28.9 310 23-405 5-323 (404)
10 TIGR02920 acc_sec_Y2 accessory 100.0 1E-61 2.2E-66 496.5 30.7 305 29-405 1-316 (395)
11 PF00344 SecY: SecY translocas 100.0 6E-57 1.3E-61 455.1 26.2 272 77-405 1-284 (346)
12 PF10559 Plug_translocon: Plug 97.6 3.1E-05 6.7E-10 52.8 1.7 35 42-76 1-35 (35)
13 PF04923 Ninjurin: Ninjurin ; 58.3 18 0.00039 30.7 4.5 43 84-126 45-90 (104)
14 COG3946 VirJ Type IV secretory 22.1 51 0.0011 34.7 1.7 22 388-409 276-302 (456)
No 1
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=5.8e-90 Score=717.22 Aligned_cols=403 Identities=72% Similarity=1.210 Sum_probs=365.2
Q ss_pred CccchHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhHHHHHHhhhccccccccc
Q 014749 3 GGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELG 82 (419)
Q Consensus 3 ~~~~~~~~~~~~~~~lP~v~~p~~~~~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifa~~~~Slf~LG 82 (419)
-|||++|.+||+++++|||++|+|+.++|+|++||++++++||+|++||+||+|.+...|++.+++++|+.+++|+|+||
T Consensus 3 ~~~~~~~~~~~~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifag~~~slf~LG 82 (474)
T PTZ00219 3 KMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSDPFYWMRVILASNRGTLMELG 82 (474)
T ss_pred CcchHHHHHHHHHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccchHHHHHHHHhcCcchHHHhc
Confidence 36999999999999999999999999999999999999999999999999999998878999999999999999999999
Q ss_pred chHHHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHH
Q 014749 83 ITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAG 162 (419)
Q Consensus 83 I~PyItAsII~QLL~~~kl~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~~~~~~~~~~~~~ivl~L~aG~ 162 (419)
|+|||||||+||||++.++.+.|++.++||||+|++||++|+++|++||.+++..+.++...+.+.....++++||++|+
T Consensus 83 I~PyItAsII~QLL~~~~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~~~~~~g~~~~~~~~~~~~iilqL~~g~ 162 (474)
T PTZ00219 83 ISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAG 162 (474)
T ss_pred cHHHHHHHHHHHHHhhCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHHHHHHHHHH
Confidence 99999999999999888999999999999999999999999999999999998643334323334446788999999999
Q ss_pred HHHHHHHhhhhcccCcCcchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHHhhcCC
Q 014749 163 IIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNL 242 (419)
Q Consensus 163 ~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~l 242 (419)
++++||||++|||||+|||+||+|++||+++++|+.|+|.....+.+.+++|+++++++.+.+++++.+.+.++++|+++
T Consensus 163 ~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~l 242 (474)
T PTZ00219 163 IVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPHL 242 (474)
T ss_pred HHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhccc
Confidence 99999999999999999999999999999999999999987766555678999988887665677788899999999999
Q ss_pred chHHHHHHHHHHHHHhhheeceEEEEeeeeccCCCccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhcCCccccc
Q 014749 243 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVN 322 (419)
Q Consensus 243 p~l~~~~~~l~~~~~~V~l~~~~~~IPi~~~~~~g~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~~~~~~~~ 322 (419)
|+++.+++++++++++||+|++|||||++|+|.+|+++++|+|+||+|+||+|||++++++|+++++++++.++++..++
T Consensus 243 ~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~ 322 (474)
T PTZ00219 243 PNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFLIN 322 (474)
T ss_pred ccHHHHHHHHHHHHhheeeeeeEEEEeeecccccCcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 99888889999999999999999999999999889889999999999999999999999999999999877655554445
Q ss_pred ccccccccccCCCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHcCcee
Q 014749 323 LLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSL 402 (419)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~Lkk~g~~I 402 (419)
+++.|.++.+.|+++|++|+++|++||+++.+.+.+|.|.++|+++++++|++|+++|++++|+||||+||||||||++|
T Consensus 323 ~l~~~~~~~~~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~I 402 (474)
T PTZ00219 323 LLGQWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGM 402 (474)
T ss_pred cccceeccccccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCc
Confidence 56667532112566799999999999999988888999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 014749 403 LCY 405 (419)
Q Consensus 403 ~~~ 405 (419)
||+
T Consensus 403 pG~ 405 (474)
T PTZ00219 403 VGY 405 (474)
T ss_pred cCc
Confidence 996
No 2
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-88 Score=664.72 Aligned_cols=404 Identities=74% Similarity=1.196 Sum_probs=394.5
Q ss_pred CCccchHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhHHHHHHhhhcccccccc
Q 014749 2 GGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMEL 81 (419)
Q Consensus 2 ~~~~~~~~~~~~~~~~lP~v~~p~~~~~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifa~~~~Slf~L 81 (419)
|||+|++|.+||+.+.+|||+.|+||.++|+|++||...+++|.++++||++|+.++..+||++|+|.++|++|+|+|+|
T Consensus 1 m~g~R~l~~vkPf~~~lPEv~~Perk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssdt~DP~yw~RvilasnrgTLMel 80 (476)
T KOG1373|consen 1 MSGFRFLDLVKPFLSFLPEVEAPERKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSDTADPFYWMRVILASNRGTLMEL 80 (476)
T ss_pred CCCcchhhhhhhhhccCccccCchhcCcHHHHHHHHHHHHHHHHHHhhccccccccCCCCCcHHHHHHHHhcCCcchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 014749 82 GITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFA 161 (419)
Q Consensus 82 GI~PyItAsII~QLL~~~kl~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~~~~~~~~~~~~~ivl~L~aG 161 (419)
|+.|++|++++||+|++.|+++++.+.++||+.+|..||++++++++.||..++++|+||..+|.|...++++++||+..
T Consensus 81 GisPivtSglimQlLag~kiIeV~~~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~tG~yG~p~dLg~~~clLii~QL~~A 160 (476)
T KOG1373|consen 81 GISPIVTSGLIMQLLAGSKIIEVNFNIKEDRELFNGAQKLFAIIITVGQAVVYVMTGMYGSPSDLGVGICLLIILQLFFA 160 (476)
T ss_pred ccchhhHHHHHHHHHccCcEEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhcchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999877788889999999999999
Q ss_pred HHHHHHHHhhhhcccCcCcchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHHhhcC
Q 014749 162 GIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQN 241 (419)
Q Consensus 162 ~~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~ 241 (419)
+.+++.|||+++||||+|||+|++|.+|||++++|+.|+|.++..+++.|++|++++++|.+.++++|..++.++|+|++
T Consensus 161 giiv~lLdEllqKGyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~Rqn 240 (476)
T KOG1373|consen 161 GIIVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQN 240 (476)
T ss_pred hHHHHHHHHHHHhccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhheeceEEEEeeeeccCCCccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 014749 242 LPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFV 321 (419)
Q Consensus 242 lp~l~~~~~~l~~~~~~V~l~~~~~~IPi~~~~~~g~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~~~~~~~ 321 (419)
|||+..++++++++++++|+|..|+++|++++|.||+.+.+|||+.|++.||+|+.|++.++...++|++++++++|.++
T Consensus 241 LPNl~nl~at~lif~iViYlQgfRVeLPirS~r~RG~~~~yPIKL~YTsn~pIilqsalvsni~~isqll~~k~~~n~~v 320 (476)
T KOG1373|consen 241 LPNLTNLLATVLIFLIVIYLQGFRVELPIRSTRARGQYGSYPIKLFYTSNMPIILQSALVSNIFVISQLLYKKFPGNFLV 320 (476)
T ss_pred ccHHHHHHHHHHHHHHHhhccceEEEeeecchhhcccCCccceEeeecCCcHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHcCce
Q 014749 322 NLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSS 401 (419)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~Lkk~g~~ 401 (419)
+++|.|++.+.++...|++|+.||++||.|+.+.+.||+|.++|.+++...|++||..|.+++|.+|||+|||||||+..
T Consensus 321 ~llG~w~~~~~~~~~~p~~glsyy~~pp~s~~~~~~dPi~~i~Yi~fml~sca~FsktWievSgsSarDvAkqlKeQ~mv 400 (476)
T KOG1373|consen 321 RLLGVWEDSEGGGRSMPVSGLSYYITPPESFGEALQDPIHFLVYIVFMLGSCALFSKTWIEVSGSSARDVAKQLKEQQMV 400 (476)
T ss_pred EEEeeeecCCCCcccccccceeEecCChHHHHHHhhCcchhHHHHHHHHHHHHHHHhHHHHHcCCCHHHHHHHHHhccce
Confidence 99999987766668899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 014749 402 LLCY 405 (419)
Q Consensus 402 I~~~ 405 (419)
.+|-
T Consensus 401 m~G~ 404 (476)
T KOG1373|consen 401 MRGH 404 (476)
T ss_pred ecCc
Confidence 9873
No 3
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=6.2e-85 Score=678.61 Aligned_cols=383 Identities=37% Similarity=0.673 Sum_probs=335.7
Q ss_pred cchHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhHHHHHHhhhcccccccccch
Q 014749 5 FRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGIT 84 (419)
Q Consensus 5 ~~~~~~~~~~~~~lP~v~~p~~~~~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifa~~~~Slf~LGI~ 84 (419)
|+++|.+||+++++|||++|+|++++|+|++||++++++||+|++||+||+|.++ .|++..++.+++.+++|+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~P~v~~p~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~-~~~l~~l~~~~gg~~~slf~LGI~ 79 (462)
T PRK08568 1 MGFLDKLEPILERLPAVKRPKGHVPFKEKLKWTAIVLILYFILTNIPLYGISQSS-QDLFELLRIIFAGSFGTLLQLGIG 79 (462)
T ss_pred CCHHHHHHHHHHhCCCccCCCcCccHHHHHHHHHHHHHHHHHHccCcCCCcCccc-ccHHHHHHHHhCCcccchHHhCcH
Confidence 4589999999999999999999999999999999999999999999999999876 566655566667889999999999
Q ss_pred HHHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccchhHHHHHHHHHHHHH
Q 014749 85 PIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVS--QLGAGNAILIILQLCFAG 162 (419)
Q Consensus 85 PyItAsII~QLL~~~kl~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~~~~--~~~~~~~~~ivl~L~aG~ 162 (419)
|||||||+||++++.++.++|++.|+||||+|++||++|+++|++||.+++.++.++... ..+..+.+++++||++|+
T Consensus 80 PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~~~~~~~~~~~~~~~~~~i~l~L~~Gt 159 (462)
T PRK08568 80 PIVTAGIILQLLVGSKLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGG 159 (462)
T ss_pred HHHHHHHHHHHHhhCchheeccCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHHH
Confidence 999999999999877888888888999999999999999999999999999863322211 124556789999999999
Q ss_pred HHHHHHHhhhhcccCcCcchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHHhhcCC
Q 014749 163 IIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNL 242 (419)
Q Consensus 163 ~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~l 242 (419)
++++||||+||| ||+|||+|++|++||+++++|+++++.+ ..+.|++|+++++++...+++.+...+ +|+++
T Consensus 160 ~i~~wL~E~Itk-~GiGnGiSliI~~gI~~~i~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~----~r~~l 231 (462)
T PRK08568 160 ILIILLDELVSK-WGIGSGISLFILAGVSQTIFVGLFNWLT---GGQGLPVGFIPALFSAITSGNLTLALL----LTTRG 231 (462)
T ss_pred HHHHHHHHHHHh-cCcCcchHHHHHHHHHHHHHHHHhhhhc---ccCccccchHHHHHHHHhcCccchhhh----hcccc
Confidence 999999999999 9999999999999999999999988654 344588999988777554443333333 78899
Q ss_pred chHHHHHHHHHHHHHhhheeceEEEEeeeeccCCCccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhcCCccccc
Q 014749 243 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVN 322 (419)
Q Consensus 243 p~l~~~~~~l~~~~~~V~l~~~~~~IPi~~~~~~g~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~~~~~~~~ 322 (419)
|+++.+++++++++++||+|++|||||+||+|.+|+++|+|+|+||+|+||+|||++++++|+++++++++.. ++
T Consensus 232 ~~l~~~~~~~~i~~~~v~~q~~~~~IPI~~~k~~g~~s~iPiKln~aGvmPiIFassll~~p~~i~~~l~~~~-----~~ 306 (462)
T PRK08568 232 LLLLGLITTIVIFLIVVYLESMRVEIPLSHGRVRGARGRYPLKFIYVSVLPVILVRALQANIQLFGQLLQRLG-----IP 306 (462)
T ss_pred cHHHHHHHHHHHHHHheeEEeeEEEEEEEeccccCCCceeeEEecccCcHHHHHHHHHHHHHHHHHHHHhhcC-----ch
Confidence 9999999999999999999999999999999988999999999999999999999999999999999875421 23
Q ss_pred ccccccccccCCCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHcCcee
Q 014749 323 LLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSL 402 (419)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~Lkk~g~~I 402 (419)
++++|++. + ..|++++.+|++||+++.+.+.+|.+.++|.++.+++|++||++|++++|+||||+||||||||++|
T Consensus 307 ~~~~~~~~---~-~~~~~~l~~~~~~p~~~~~~~~~p~~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~diAe~Lkk~g~~I 382 (462)
T PRK08568 307 ILGTYDSS---G-ASPISGLAYYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQNSGMQI 382 (462)
T ss_pred hhhhcccc---c-ccchhHHHHHhCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 46666532 2 3378899999999999888888999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 014749 403 LCY 405 (419)
Q Consensus 403 ~~~ 405 (419)
||+
T Consensus 383 pGi 385 (462)
T PRK08568 383 PGF 385 (462)
T ss_pred cCc
Confidence 996
No 4
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.3e-76 Score=601.17 Aligned_cols=336 Identities=28% Similarity=0.457 Sum_probs=272.0
Q ss_pred hhccccccccccc-cccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhHH-----HHHHh---hhcccccccccc
Q 014749 13 PFLPFLPEVQSAD-RKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYW-----MRVIL---ASNRGTVMELGI 83 (419)
Q Consensus 13 ~~~~~lP~v~~p~-~~~~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~-----~~~if---a~~~~Slf~LGI 83 (419)
|..+.+|++.+|+ |.+++|||++||++++++||+|++||+||+|.++.+|.+.+ +.|++ |++|+|+|+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI 80 (436)
T COG0201 1 PLLPLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGI 80 (436)
T ss_pred CcchhhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHcc
Confidence 4567899999997 78999999999999999999999999999999877654333 34566 469999999999
Q ss_pred hHHHhHHHHHHHHh-cc-cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c---cccccchhHHHHHHHH
Q 014749 84 TPIVTSGLVMQLLA-GS-KIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMY-G---SVSQLGAGNAILIILQ 157 (419)
Q Consensus 84 ~PyItAsII~QLL~-~~-kl~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~-~---~~~~~~~~~~~~ivl~ 157 (419)
+||||||||||||+ .. ++.+++||+|+||||+|++|||+|+++|++||.+++..+.+ + ...+.+...+++++++
T Consensus 81 ~PyITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~ 160 (436)
T COG0201 81 MPYITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQ 160 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHH
Confidence 99999999999994 44 55569999999999999999999999999999999985332 1 1112235678999999
Q ss_pred HHHHHHHHHHHHhhhhcccCcCcchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHH
Q 014749 158 LCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAF 237 (419)
Q Consensus 158 L~aG~~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~ 237 (419)
|++|||++|||||+||| ||+|||+||+|++||++++++.++++.... ..|.. ....+
T Consensus 161 L~~Gt~~lmwLgE~Itk-~GIGnGiSLiIfagI~~~lp~~~~~~~~~~------~~~~~------------~~~~l---- 217 (436)
T COG0201 161 LTAGTMFLMWLGEQITK-RGIGNGISLIIFAGIVASLPSAIFGIIGAL------PTGAL------------FLSIL---- 217 (436)
T ss_pred HHHHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHhHHHHHHHHHHH------hcchh------------HHHHH----
Confidence 99999999999999999 999999999999999999988877642110 00100 00011
Q ss_pred hhcCCchHHHHHHHHHHHHHhhheeceEEEEeeeecc---CCCccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhh
Q 014749 238 YRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKN---ARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRK 314 (419)
Q Consensus 238 ~~~~lp~l~~~~~~l~~~~~~V~l~~~~~~IPi~~~~---~~g~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~ 314 (419)
.+++.++.++++++++||+|++|||||+||+| .+|+++|+|+|+|||||||+|||||++++|.++++++.+.
T Consensus 218 -----~~l~~~~~~l~ii~~vvyve~~~r~IPI~y~~~~~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~ 292 (436)
T COG0201 218 -----FLLLLVLLTLAIIFLVVYVEQARRRIPIQYAKRQSYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNG 292 (436)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhheEEEeehhhhhhhhcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 02567778888889999999999999999999 6899999999999999999999999999999999987521
Q ss_pred cCCcccccccccccccccCCCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Q 014749 315 YSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQ 394 (419)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~ 394 (419)
+. ..|. .+...+..+++| .+|.|+.+|.++++ +|||||++++ .||||+|||
T Consensus 293 --~~------~~~~--------~~~~~i~~~l~~--------~~~~y~~~y~~lii----~Fs~Fy~~i~-~np~~~A~~ 343 (436)
T COG0201 293 --GL------AYYL--------SPLTSISDALSP--------GSPVYIALYVVLII----FFSYFYTEIQ-FNPEEIAEN 343 (436)
T ss_pred --Cc------cccc--------cchhhHHHhccC--------CcHHHHHHHHHHHH----HHHHHHHHHh-cCHHHHHHH
Confidence 00 0000 011122334433 35778887777777 9999999999 889999999
Q ss_pred HHHcCceeccc
Q 014749 395 LKVYWSSLLCY 405 (419)
Q Consensus 395 Lkk~g~~I~~~ 405 (419)
|||+|.+|||.
T Consensus 344 lkksG~~IPGi 354 (436)
T COG0201 344 LKKSGGFIPGI 354 (436)
T ss_pred HHHcCCcCCCc
Confidence 99999999996
No 5
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=1.1e-70 Score=565.57 Aligned_cols=319 Identities=32% Similarity=0.546 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHHHHcccccCCCccCCCCCCh-----hHHHHHHh---hhcccccccccchHHHhHHHHHHHHhc--cc
Q 014749 31 REKVIYTVISLFIFLVCSQLPLYGIHSTTGADP-----FYWMRVIL---ASNRGTVMELGITPIVTSGLVMQLLAG--SK 100 (419)
Q Consensus 31 ~~ril~Tl~il~iy~lg~~IPlpGi~~~~~~~~-----~~~~~~if---a~~~~Slf~LGI~PyItAsII~QLL~~--~k 100 (419)
|+|++||++++++||+|++||+||+|.++.+|+ +.++.+++ |++|+|+|+|||+|||||||+|||++. .+
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~~~~ 80 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDIQQNGIFNLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGDVPP 80 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhhccccHHHHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhccCh
Confidence 689999999999999999999999999765443 33344444 789999999999999999999999976 45
Q ss_pred cccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhhhhcccCcC
Q 014749 101 IIEVDN-NVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLG 179 (419)
Q Consensus 101 l~~l~~-~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~~~~~~~~~~~~~ivl~L~aG~~~v~wL~e~it~g~GiG 179 (419)
..+.++ |+|+||||+|++||++|+++|++||.+++..+.++...+.+..++..++++|++|+++++||||+||| ||+|
T Consensus 81 ~l~~~~~~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~-~GiG 159 (410)
T TIGR00967 81 LLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGMYGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITK-YGIG 159 (410)
T ss_pred HHHHHhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCcc
Confidence 555554 58999999999999999999999999998434544333445556789999999999999999999999 9999
Q ss_pred cchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHHhhcCCchHHHHHHHHHHHHHhh
Q 014749 180 SGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVV 259 (419)
Q Consensus 180 nGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~lp~l~~~~~~l~~~~~~V 259 (419)
||+|++|++||+++++|+++++...... +.+.+..+++| +|+++.+++++++++++|
T Consensus 160 nG~SliI~~gI~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~--~~~~~~~~~~~~~~~~~v 216 (410)
T TIGR00967 160 NGISLLIFAGIIATIPSGLLQPTEVRQS---------------------KVRDLISFLQN--LPFLLYLIATIIVFAVVV 216 (410)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhhh---------------------hccchhhHHHH--HHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888766421100 00111222333 356777888889999999
Q ss_pred heeceEEEEeeeeccCCC-----ccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhcCCcccccccccccccccCC
Q 014749 260 YFQGFKVVLPVRSKNARG-----QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG 334 (419)
Q Consensus 260 ~l~~~~~~IPi~~~~~~g-----~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~ 334 (419)
|+|++|||||+||+|.++ +++|+|+|+||||+||+|||++++++|+++++++.+..+.+
T Consensus 217 ~~~~~~~~IPi~~~~~~~~~~~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~---------------- 280 (410)
T TIGR00967 217 FVQQARRKIPIQSAKRQGGRRGSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGGA---------------- 280 (410)
T ss_pred eeeeeEEEEEEEEhhhhcCCCCCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCCcchh----------------
Confidence 999999999999998544 78999999999999999999999999999999874321111
Q ss_pred CccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHcCceeccc
Q 014749 335 HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCY 405 (419)
Q Consensus 335 ~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~Lkk~g~~I~~~ 405 (419)
++.+++.++ ...+|+|.++|.++++ +||++|+++ ++||||+||||||||++|||.
T Consensus 281 ---------~~~~~~~~~--~~~~p~~~~~y~~lii----~Fs~f~~~~-~~~p~~iA~~lkk~g~~IpGi 335 (410)
T TIGR00967 281 ---------WFLNPILSL--SLSDPIGAILYLILII----FFSFFYVEL-QLNPEDMAKNLKKQGMFIPGI 335 (410)
T ss_pred ---------HHHHHHHhc--CCcccHHHHHHHHHHH----HHHHHHHHH-ccCHHHHHHHHHHCCCcCCCc
Confidence 112222221 1346889999966655 999999995 599999999999999999996
No 6
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=2.1e-70 Score=565.41 Aligned_cols=318 Identities=21% Similarity=0.349 Sum_probs=262.7
Q ss_pred cccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCC-------ChhHHHHHHh---hhcccccccccchHHHhHHH
Q 014749 22 QSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGA-------DPFYWMRVIL---ASNRGTVMELGITPIVTSGL 91 (419)
Q Consensus 22 ~~p~~~~~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~~-------~~~~~~~~if---a~~~~Slf~LGI~PyItAsI 91 (419)
.+.++++|+|+|++||++++++||+|++||+||+|.++.+ ++++++++++ |++|+|+|+|||+|||||||
T Consensus 6 ~~~~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyItAsI 85 (426)
T PRK09204 6 KNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSGGALSRFSIFALGIMPYITASI 85 (426)
T ss_pred HhHhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHhhccccHHHHHHHHcccchhcccHHHhCcHHHHHHHH
Confidence 3456789999999999999999999999999999987652 2678888888 68999999999999999999
Q ss_pred HHHHHhcc--cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------cc-cccchhHHHHHHHHHHHHH
Q 014749 92 VMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYG------SV-SQLGAGNAILIILQLCFAG 162 (419)
Q Consensus 92 I~QLL~~~--kl~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~------~~-~~~~~~~~~~ivl~L~aG~ 162 (419)
+||||+.. ++.+++||+|+||||+|++||++|+++|++||++++.. +.+ .. .+++...+..++++|++|+
T Consensus 86 i~QLL~~~ip~l~~l~kege~gr~k~~~~tr~ltl~~a~iQs~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~L~~Gs 164 (426)
T PRK09204 86 IMQLLTVVIPKLEELKKEGEAGRRKINQYTRYLTVVLAFVQSIGIAAG-LNSMSGGGGLVPIPPGFFFYLTIVITLTAGT 164 (426)
T ss_pred HHHHHHHHhhhHHHHhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCccccccCCccHHHHHHHHHHHHHHH
Confidence 99999976 88999999999999999999999999999999998853 321 11 1123456789999999999
Q ss_pred HHHHHHHhhhhcccCcCcchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHHhhcCC
Q 014749 163 IIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNL 242 (419)
Q Consensus 163 ~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~l 242 (419)
++++||||+||| ||+|||+|++|++||++++++++.+....... + . .+.+.
T Consensus 165 ~i~~wL~e~It~-~GiGnGiSliI~~gI~~~ip~~~~~~~~~~~~-~-~------------------~~~~~-------- 215 (426)
T PRK09204 165 MFLMWLGEQITE-RGIGNGISLIIFAGIVAGLPSAIGQTFELART-G-S------------------LSILV-------- 215 (426)
T ss_pred HHHHHHHHHHhc-cCcccchHHHHHHHHHHHHHHHHHHHHHHhcc-C-c------------------chHHH--------
Confidence 999999999999 99999999999999999997765543210000 0 0 00000
Q ss_pred chHHHHHHHHHHHHHhhheeceEEEEeeeeccC-------CCccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhc
Q 014749 243 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNA-------RGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKY 315 (419)
Q Consensus 243 p~l~~~~~~l~~~~~~V~l~~~~~~IPi~~~~~-------~g~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~ 315 (419)
.++.+++++++++++||+|++|||||+||+|. +++++|+|+|+||+|+||+|||++++++|++++++.
T Consensus 216 -~~~~~~~~~~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~---- 290 (426)
T PRK09204 216 -FLLLIVLFLAVIAFVVFVEQAQRRIPVQYAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFF---- 290 (426)
T ss_pred -HHHHHHHHHHHHHHHheeeeeEEEEEEEehhhhccccccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHhc----
Confidence 14446667788899999999999999999984 346899999999999999999999999999998871
Q ss_pred CCcccccccccccccccCCCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Q 014749 316 SGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQL 395 (419)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~L 395 (419)
+++. |.+ .+.+|++|. +|.|.++|.++++ +|+++|++++ +||||+||||
T Consensus 291 ~~~~-------~~~-----------~~~~~~~~~--------~~~~~~~y~~lii----~Fs~fy~~i~-~~p~~iAe~l 339 (426)
T PRK09204 291 GSGS-------WLQ-----------WIANYLSPG--------SPLYILLYALLII----FFTFFYTAIQ-FNPEEIAENL 339 (426)
T ss_pred CchH-------HHH-----------HHHHHhCCC--------ChHHHHHHHHHHH----HHHHHHHHHh-cCHHHHHHHH
Confidence 1210 211 134677652 5889999998888 7999999999 9999999999
Q ss_pred HHcCceeccc
Q 014749 396 KVYWSSLLCY 405 (419)
Q Consensus 396 kk~g~~I~~~ 405 (419)
||||++|||.
T Consensus 340 ~k~g~~IpGi 349 (426)
T PRK09204 340 KKSGGFIPGI 349 (426)
T ss_pred HHCCCcccCC
Confidence 9999999996
No 7
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=4.5e-69 Score=554.41 Aligned_cols=318 Identities=21% Similarity=0.327 Sum_probs=254.0
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCC-----CChhHHHHHHh---hhcccccccccchHHHhHHHHHH
Q 014749 23 SADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG-----ADPFYWMRVIL---ASNRGTVMELGITPIVTSGLVMQ 94 (419)
Q Consensus 23 ~p~~~~~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~-----~~~~~~~~~if---a~~~~Slf~LGI~PyItAsII~Q 94 (419)
+.+|++|+|+|++||++++++||+|++||+||+|.+.. +|+++++++++ +++|+|+|+|||+|||||||+||
T Consensus 3 ~~~~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~~~~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsII~Q 82 (417)
T CHL00161 3 QSKKKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSLSNNPLLNLLNTFSGGGFFVIGLFALGILPYINASIIIQ 82 (417)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhhccccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHHHHH
Confidence 34688999999999999999999999999999998764 36788999888 47889999999999999999999
Q ss_pred HHhcc--cccccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 014749 95 LLAGS--KIIEVDNN-VREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDEL 171 (419)
Q Consensus 95 LL~~~--kl~~l~~~-~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~~~~~~~~~~~~~ivl~L~aG~~~v~wL~e~ 171 (419)
+++.. ++.+++|| +|+||||+|++||++|+++|++||++++.+ ..+...+.+.....+++++|++|+++++||||+
T Consensus 83 Ll~~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~-~~~~~~~~~~~~~~~~v~~L~~Gt~~~~wL~e~ 161 (417)
T CHL00161 83 LLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFW-LKPYLFNWNLLLALEIVLALTSGSMIVLWLSEL 161 (417)
T ss_pred HHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876 78888887 999999999999999999999999999874 322112233456789999999999999999999
Q ss_pred hhcccCcCcchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHHhhcCCchHHHHHHH
Q 014749 172 LQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLAT 251 (419)
Q Consensus 172 it~g~GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~lp~l~~~~~~ 251 (419)
||| ||+|||+|++|++||++++ |..+.. .+.+.+++...+. .+..++++
T Consensus 162 it~-~GiGnGiSliI~~~I~~~~------p~~~~~---------------~~~~~~~~~~~~~---------~~~~~~~~ 210 (417)
T CHL00161 162 ITE-KGLGNGSSLLIFFNIVSNL------PKLLQS---------------LLFSLSANITILS---------ILLLLFLF 210 (417)
T ss_pred HHh-cCcCcchHHHHHHHHHHHH------HHHHHH---------------HHHHhccchhHHH---------HHHHHHHH
Confidence 999 9999999999999999999 321110 0000000111111 13445567
Q ss_pred HHHHHHhhheeceEEEEeeeeccCCC------ccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhcCCcccccccc
Q 014749 252 VLVFLIVVYFQGFKVVLPVRSKNARG------QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLG 325 (419)
Q Consensus 252 l~~~~~~V~l~~~~~~IPi~~~~~~g------~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~~~~~~~~~l~ 325 (419)
+++++++|++|++|||||+||+|.++ +++|+|+|+||+|+||+|||++++++|+++++++++.+..
T Consensus 211 ~~vi~~vv~~~~~~rrIPi~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~-------- 282 (417)
T CHL00161 211 FITLIGIIFLQEAIRKIPLISAKQLGKSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLL-------- 282 (417)
T ss_pred HHHHHHHHHhhcceEEEEEEEhhhhccccccCccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccchh--------
Confidence 78888999999999999999998543 7899999999999999999999999999999987542111
Q ss_pred cccccccCCCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHcCceeccc
Q 014749 326 KWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCY 405 (419)
Q Consensus 326 ~~~~~~~~~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~Lkk~g~~I~~~ 405 (419)
.+. ....++++ ..+.|.++|.++++ +||++|++++ +||||+||||||||++|||.
T Consensus 283 ~~~------------~~~~~~~~--------~~~~y~~~y~~lii----~Fs~f~~~i~-~~p~~iA~~Lkk~g~~IpGv 337 (417)
T CHL00161 283 PLL------------SLFLQLAS--------FKILYLVLYFVLIL----FFSYFYSTIV-LNPKDISENLQKMAVSIPGI 337 (417)
T ss_pred hHH------------HHHhcCCc--------ccHHHHHHHHHHHH----HHHHHHHHHh-cCHHHHHHHHHHCCCcCCCc
Confidence 110 11223321 23556666665555 9999999999 99999999999999999996
No 8
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=2.2e-68 Score=549.73 Aligned_cols=318 Identities=19% Similarity=0.283 Sum_probs=246.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCC----ChhHHHHHHh---hhcccccccccchHHHhHHHHHHHHh
Q 014749 25 DRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGA----DPFYWMRVIL---ASNRGTVMELGITPIVTSGLVMQLLA 97 (419)
Q Consensus 25 ~~~~~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~~----~~~~~~~~if---a~~~~Slf~LGI~PyItAsII~QLL~ 97 (419)
++++|+|||++||++++++||+|++||+||+|.++.+ +.+.++.++| +++|+|+|+|||+|||||||+||||+
T Consensus 9 ~~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~~~~~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII~QLL~ 88 (434)
T PRK12907 9 MRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKVQDQANVLGMLNVFGGGALQHFSIFAVGITPYITASIIVQLLQ 88 (434)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhhhhhhhHHHHHHHHhccccccChHHHHccHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999986542 2366777888 46999999999999999999999996
Q ss_pred cc---cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----ccccchhHHHHHHHHHHHHHHHHHHHH
Q 014749 98 GS---KIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGS-----VSQLGAGNAILIILQLCFAGIIVICLD 169 (419)
Q Consensus 98 ~~---kl~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~~-----~~~~~~~~~~~ivl~L~aG~~~v~wL~ 169 (419)
.. ++.+++||+|+||||+|++|||+|+++|++||++++.. +... ..+.+......++++|++||++++|||
T Consensus 89 ~~~~p~l~~l~kege~gr~k~~~~tR~ltl~la~iQs~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~WL~ 167 (434)
T PRK12907 89 MDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYG-FNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLG 167 (434)
T ss_pred hccCccHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 56666789999999999999999999999999999863 4311 112233346778899999999999999
Q ss_pred hhhhcccCcCcchHHHHHHHHHHHHhHhhcCcccccCCCC--ccchhHHHHHHHHHHhhhhhhhHHHHHHhhcCCchHHH
Q 014749 170 ELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRG--AEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITN 247 (419)
Q Consensus 170 e~it~g~GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~--~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~lp~l~~ 247 (419)
|+||| ||+|||+|++|++||+++++ +.+.+... ....|.. .+ ...+. .++.
T Consensus 168 e~It~-~GIGnGiSliI~~gIv~~~p------~~~~~~~~~~~~~~~~~-~~----------~~~~~---------~~~~ 220 (434)
T PRK12907 168 EQITA-NGVGNGISMLIFAGLVAAIP------NVANQIYLQQFQNAGDQ-LF----------MHIIK---------MLLI 220 (434)
T ss_pred HHHhc-CCcCcccHHHHHHHHHHHHH------HHHHHHHHHHhhccCch-hh----------hhHHH---------HHHH
Confidence 99999 99999999999999999993 22111000 0000000 00 00000 1233
Q ss_pred HHHHHHHHHHhhheeceEEEEeeeeccC-------CC-ccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 014749 248 LLATVLVFLIVVYFQGFKVVLPVRSKNA-------RG-QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNF 319 (419)
Q Consensus 248 ~~~~l~~~~~~V~l~~~~~~IPi~~~~~-------~g-~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~~~~~ 319 (419)
+++++++++++|++|++|||||+||+|+ +| +++|+|+|+|+|||||+||||+++++|+++++++.+ +.
T Consensus 221 ~~~~~~~i~~~v~v~~~~rrIPi~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~----~~ 296 (434)
T PRK12907 221 GLVILAIVVGVIYIQQAVRKIPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPD----SS 296 (434)
T ss_pred HHHHHHHHHHHhheeeeeEEEEEEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCC----Ch
Confidence 4445567788999999999999999962 23 567999999999999999999999999999988632 11
Q ss_pred cccccccccccccCCCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHcC
Q 014749 320 FVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYW 399 (419)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~Lkk~g 399 (419)
. . .| +..+++|. +|.|.++|.++++ +|+|||+.++ +||||+||||||+|
T Consensus 297 ~---~-~~--------------~~~~~~~~--------~~~~~~~y~~lii----~Fs~fyt~i~-~nP~~iAenL~k~G 345 (434)
T PRK12907 297 V---S-KW--------------LVANLDFA--------HPIGMTLYVGLIV----AFTYFYAFIQ-VNPEQMAENLKKQN 345 (434)
T ss_pred H---H-HH--------------HHHHcCCC--------CcHHHHHHHHHHH----HHHHHHHHHc-cCHHHHHHHHHHCC
Confidence 0 0 11 12334442 4778899988877 8899998888 99999999999999
Q ss_pred ceeccc
Q 014749 400 SSLLCY 405 (419)
Q Consensus 400 ~~I~~~ 405 (419)
++|||.
T Consensus 346 ~~IPGi 351 (434)
T PRK12907 346 GYVPGI 351 (434)
T ss_pred CcCCCc
Confidence 999996
No 9
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=8.3e-66 Score=527.10 Aligned_cols=310 Identities=18% Similarity=0.248 Sum_probs=242.1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCC---hhHHHHHHh---hhcccccccccchHHHhHHHHHHHH
Q 014749 23 SADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD---PFYWMRVIL---ASNRGTVMELGITPIVTSGLVMQLL 96 (419)
Q Consensus 23 ~p~~~~~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~~~---~~~~~~~if---a~~~~Slf~LGI~PyItAsII~QLL 96 (419)
+-++++|+|+|++||++++++||+|++||+||+|.++.+| .+.++.+.+ +++|+|+|+|||+|||||||+||||
T Consensus 5 ~~~~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~~~~~~~~~~~~fsGG~~~~~slfsLGI~PyItAsII~QLL 84 (404)
T PRK12417 5 KKFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGGHESFLKIAAANTGGDLRTLNIFSLGLGPWMTSMIILQLF 84 (404)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcCccchHHHHHHHhcccccccCcHHHHccHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999986644 355666666 4789999999999999999999999
Q ss_pred hcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 014749 97 AGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGY 176 (419)
Q Consensus 97 ~~~kl~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~~~~~~~~~~~~~ivl~L~aG~~~v~wL~e~it~g~ 176 (419)
+..++.+++++.+|++.+ .|||+|+++|++||++++.+..+.. +.+..++..++++|++||++++||||+||| |
T Consensus 85 ~~~~~~~l~~~~kee~gr---~~r~ltl~la~iQs~~~~~~~~~~~--~~~~~~~~~~~l~L~aGt~~~~WL~E~it~-~ 158 (404)
T PRK12417 85 SYRKRDGLMKQTIEEQHY---RERILTLIIAVIQSLAVILSLPSKE--RISQTNILLNTLILVTGTMFLVWLSDLNAR-Y 158 (404)
T ss_pred HhCCCcchhhcChHHHHH---HHHHHHHHHHHHHHHHHHHHhcccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 987777777764443322 3699999999999999987522211 111235788999999999999999999999 9
Q ss_pred CcCcchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHHhhcCCchHHHHHHHHHHHH
Q 014749 177 GLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFL 256 (419)
Q Consensus 177 GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~lp~l~~~~~~l~~~~ 256 (419)
|+| |+|++|++||+++++++.++.. .. . +. . ....+.+.+++++
T Consensus 159 GIG-G~SliI~~~Iv~~~p~~~~~~~--~~-------~--~~---------------~---------~~~~~~~~~~~i~ 202 (404)
T PRK12417 159 GIG-GPMPIVLVSMIKSIPQDVIEYI--DA-------S--HI---------------V---------IILLILLVIITLF 202 (404)
T ss_pred Ccc-HHHHHHHHHHHHHHHHHHHHHH--HH-------H--HH---------------H---------HHHHHHHHHHHHH
Confidence 999 9999999999999966654321 00 0 00 0 0222333444556
Q ss_pred HhhheeceEEEEeeeeccC--C-CccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhcCCcccccccccccccccC
Q 014749 257 IVVYFQGFKVVLPVRSKNA--R-GQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYS 333 (419)
Q Consensus 257 ~~V~l~~~~~~IPi~~~~~--~-g~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~ 333 (419)
++|++|++|||||+||++. + .+++|+|+|+|+|||||+|||+|++++|+++++++++.++++...+ |
T Consensus 203 ~~v~~~~~~rrIPi~~~~~~~~~~~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~----~------ 272 (404)
T PRK12417 203 FLYFIELVEYRIPYNDIMNHNRFKMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGIS----A------ 272 (404)
T ss_pred HHHHHhheEEEEEEEEhhhhccCCCCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHH----H------
Confidence 7999999999999999873 2 3678999999999999999999999999999998866544432110 1
Q ss_pred CCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHcCceeccc
Q 014749 334 GHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCY 405 (419)
Q Consensus 334 ~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~Lkk~g~~I~~~ 405 (419)
...++++ ++|.|.++|.++++ +|++||+.+. +||||+||||||||++|||.
T Consensus 273 --------~~~~~~~--------~~~~~~~~y~~lii----~fs~fys~i~-~nP~diAe~lkk~g~~IpGi 323 (404)
T PRK12417 273 --------DMDMLSF--------GSPLGVTVYLILQF----LLSYFFSFVN-INTKQIAKDMLKSGNYIPGV 323 (404)
T ss_pred --------HHHHcCC--------CCcHHHHHHHHHHH----HHHHHHHHHh-cCHHHHHHHHHHCCCcccCC
Confidence 1133332 36889999999999 5566666666 99999999999999999996
No 10
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=1e-61 Score=496.47 Aligned_cols=305 Identities=19% Similarity=0.321 Sum_probs=235.2
Q ss_pred chHHHHHHHHHHHHHHHHcccccCCCccCCCC-----CChhHHHHHHh-h--hcccccccccchHHHhHHHHHHHHhccc
Q 014749 29 PFREKVIYTVISLFIFLVCSQLPLYGIHSTTG-----ADPFYWMRVIL-A--SNRGTVMELGITPIVTSGLVMQLLAGSK 100 (419)
Q Consensus 29 ~l~~ril~Tl~il~iy~lg~~IPlpGi~~~~~-----~~~~~~~~~if-a--~~~~Slf~LGI~PyItAsII~QLL~~~k 100 (419)
.+|+|++||++++++||+|++||+||+|.+.. ++..+++.+.+ + .+|+|+|+|||+|||||||+||+|+..+
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~~~~ 80 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQDMEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFSFTK 80 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhHHHhcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHHhCc
Confidence 37999999999999999999999999998752 12234455555 3 5678999999999999999999998867
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHhhhhcccCcCc
Q 014749 101 IIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGS 180 (419)
Q Consensus 101 l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~g~~~~~~~~~~~~~~~ivl~L~aG~~~v~wL~e~it~g~GiGn 180 (419)
+.++|+..+|+| ++.||++|+++|++||.+++.+ .... .+.+......++++|++|+++++||||+||| ||+|
T Consensus 81 ~~~l~~~~~~~~---~~~tr~ltl~~a~iQs~~~~~~-~~~~-~~~~~~~~~~~vl~L~~Gt~iv~wL~E~it~-~GiG- 153 (395)
T TIGR02920 81 SDGFDAQSPKEQ---QYRERFLTLIIAIIQGLAIIHS-FTNK-NGLSDFNMLLATLILVTGTCLLVWLADLNAK-YGIG- 153 (395)
T ss_pred CcchhhhCHHHh---hHHHHHHHHHHHHHHHHHHHHH-hhcc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-
Confidence 777887766655 3369999999999999999875 3211 1111235678899999999999999999999 9999
Q ss_pred chHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHHhhhhhhhHHHHHHhhcCCchHHHHHHHHHHHHHhhh
Q 014749 181 GISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVY 260 (419)
Q Consensus 181 GiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~l~~~~~~~~lp~l~~~~~~l~~~~~~V~ 260 (419)
|+|++|++||+++++++.++..+. + .+.. .++..++++++++++++
T Consensus 154 G~sllI~~~I~s~~~~~~~~~~~~----~---~~~~---------------------------~~~~~~~~~~~i~~~v~ 199 (395)
T TIGR02920 154 GSMPIVLVSMLKNIPSNVFELFQM----S---YIWL---------------------------IALLILLTLVALFLLAF 199 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc----c---hHHH---------------------------HHHHHHHHHHHHHHHHh
Confidence 999999999999997776543210 0 0110 02223445555667999
Q ss_pred eeceEEEEeeeeccC--CC-ccceeeeccccccchHHHHHHHHHHHHHHHHHHHhhhcCCcccccccccccccccCCCcc
Q 014749 261 FQGFKVVLPVRSKNA--RG-QQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSI 337 (419)
Q Consensus 261 l~~~~~~IPi~~~~~--~g-~~~~iPiKln~aGvmPvIfasall~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 337 (419)
+|++|||||++|+|. |+ +++|+|+|+||+|+||+|||++++++|+++++.+.+.++++.. .+.|.
T Consensus 200 ~~~~~~rIpv~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~---~~~~~--------- 267 (395)
T TIGR02920 200 IERAEYRIPVNDISLHNRSNLMSYLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSL---INNWV--------- 267 (395)
T ss_pred eecceEEEEEEEchhhccCCCCcccceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCCch---HHHHh---------
Confidence 999999999999983 43 6788999999999999999999999998887766554333311 11121
Q ss_pred ccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHcCceeccc
Q 014749 338 PVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKVYWSSLLCY 405 (419)
Q Consensus 338 ~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~g~~P~diA~~Lkk~g~~I~~~ 405 (419)
.+++ ..+|.|.++|.++++++|++||+. . +||||+||||||||++|||.
T Consensus 268 ------~~~~--------~~~~~~~i~y~~lii~fs~fys~i----~-~nP~diA~~Lkk~g~~IpGi 316 (395)
T TIGR02920 268 ------FQFS--------FSSPVGILIYLILQMLLSYFFTFV----N-INPKEISKSFRKSGNYIPGI 316 (395)
T ss_pred ------hccC--------CcchHHHHHHHHHHHHHHHHHHHh----e-ECHHHHHHHHHHCCCCccCc
Confidence 1122 236889999999999666666666 3 99999999999999999996
No 11
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=6e-57 Score=455.08 Aligned_cols=272 Identities=35% Similarity=0.554 Sum_probs=218.0
Q ss_pred ccccccchHHHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccc------ccchh
Q 014749 77 TVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMS-GMYGSVS------QLGAG 149 (419)
Q Consensus 77 Slf~LGI~PyItAsII~QLL~~~kl~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~-g~~~~~~------~~~~~ 149 (419)
|+|+|||+|||||||+||++...++.++|+++|+||||++++||++|+++|++||++++.. +.++... +.+..
T Consensus 1 SlfsLGI~PyitAsIi~Qll~~~~l~~l~~~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLLIIPKLIKLQKEGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGSGFI 80 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHHHSSSSSSHSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTTCHH
T ss_pred ChHhhccHHHHHHHHHHHHHhcccHHHhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchHHH
Confidence 7999999999999999999988899999999999999999999999999999999999964 2222211 12455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCcCcchHHHHHHHHHHHHhHhhcCcccccCCCCccchhHHHHHHHHHH-hhhh
Q 014749 150 NAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLI-TKQN 228 (419)
Q Consensus 150 ~~~~ivl~L~aG~~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~-~~~~ 228 (419)
...+++++|++|+++++||||+||| ||+|||+|++|++||+++++|++.+.. +... +.+.
T Consensus 81 ~~~~i~l~L~~G~~i~~wL~e~it~-~GiGnG~SliI~~~I~~~~~~~i~~~~------------------~~~~~~~~~ 141 (346)
T PF00344_consen 81 NYLLIVLQLVAGSMILIWLSELITK-YGIGNGISLIIFAGIISNLPWSIINLF------------------QLLSNKAGS 141 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CSSSTHHHHHHHHHHHHHHHHHHHHHH------------------HHHHTTCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCcccchHHHHHHHHHHHHHHHHHHHH------------------HHHHHhhcc
Confidence 6699999999999999999999999 999999999999999999977643221 1111 0001
Q ss_pred hhhHHHHHHhhcCCchHHHHHHHHHHHHHhhheeceEEEEeeeeccC----CCccceeeeccccccchHHHHHHHHHHHH
Q 014749 229 KVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNA----RGQQGAYPIKLFYTSNMPIILQSALVSNL 304 (419)
Q Consensus 229 ~~~~l~~~~~~~~lp~l~~~~~~l~~~~~~V~l~~~~~~IPi~~~~~----~g~~~~iPiKln~aGvmPvIfasall~~p 304 (419)
..+.+. .+..+++++++++++|++|++|||||++|+|. +++++|+|+|+||+|+||+||+++++++|
T Consensus 142 ~~~~~~---------~l~~~~~~l~~~~~~v~l~~~~~rIPi~~~~~~~~~~~~~~ylPikln~aG~mPiifa~sll~~p 212 (346)
T PF00344_consen 142 LSNALF---------LLIILIITLVVIALVVYLQEAERRIPIQYARIVNSSRGQSSYLPIKLNYAGVMPIIFASSLLSLP 212 (346)
T ss_dssp SSSTHH---------HHHHHHHHHHHHHHHHHHHHCEEEECEBBSSSB--SSSBCSCEEEETTSSTHHHHHHHHHHHHHH
T ss_pred cccHHH---------HHHHHHHHHHHHHhheeeeeeEEEEEEEeccccccCcccceeeeeeccccccchHHHHHHHHHHH
Confidence 111111 25667788888999999999999999999998 78899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcccccccccccccccCCCccccccccccccCCccchhhccChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014749 305 YFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVS 384 (419)
Q Consensus 305 ~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~l~p~~~~~~~~~~~~~~iiY~~liv~~s~~Fs~~~~~i~ 384 (419)
+++++++++.++++ .+.+++.+|++ ++.+...|.++.++++++||++|+ ..
T Consensus 213 ~~i~~~l~~~~~~~------------------~~~~~i~~~~~----------~~~~~~~y~~~~~~li~~Fs~~~~-~~ 263 (346)
T PF00344_consen 213 QYIAQFLNSQFPNN------------------WLVSGIAYYFS----------QNLNSPLYIIFYLILIILFSYFFS-FI 263 (346)
T ss_dssp HHHHHHCTTCSCCS------------------CCSSCCHHHTS----------SSHHHHHHHHHHHHHHHHHHHHHH-TS
T ss_pred HHHHHhccCCCccc------------------cHHHHHHHHhc----------cCcchHHHHHHHHHHHHHHHHHHh-hc
Confidence 99999886543321 23345667773 233444444444555558999998 55
Q ss_pred CCCHHHHHHHHHHcCceeccc
Q 014749 385 GSSARDVAKQLKVYWSSLLCY 405 (419)
Q Consensus 385 g~~P~diA~~Lkk~g~~I~~~ 405 (419)
+.||||+||||||+|++|||.
T Consensus 264 ~~~p~~iA~~lkk~g~~I~Gi 284 (346)
T PF00344_consen 264 NINPKDIAENLKKSGDYIPGI 284 (346)
T ss_dssp SSHHHHHHHHCHCTTSSSSTC
T ss_pred cCCHHHHHHHHHHhCCEeCCC
Confidence 699999999999999999986
No 12
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=97.60 E-value=3.1e-05 Score=52.78 Aligned_cols=35 Identities=57% Similarity=1.233 Sum_probs=30.4
Q ss_pred HHHHHcccccCCCccCCCCCChhHHHHHHhhhccc
Q 014749 42 FIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRG 76 (419)
Q Consensus 42 ~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifa~~~~ 76 (419)
++|.++++|||+|++.....|++.++|.++|.+++
T Consensus 1 ilYl~ls~ipLyG~~~~~~~D~f~~~R~i~As~~G 35 (35)
T PF10559_consen 1 ILYLFLSQIPLYGLQSASSSDPFYWLRAIFASNRG 35 (35)
T ss_dssp HHHHHHHHSB-STSTTTTSSCCHTTTHHHHTSSTT
T ss_pred CEEEEeeCCccccccCCCcCCHHHHHHHHHcccCC
Confidence 58999999999999777888999999999998764
No 13
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=58.32 E-value=18 Score=30.72 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=25.8
Q ss_pred hHHHhHHHHHHHHhcccc---cccccccHHHHHHHHHHHHHHHHHH
Q 014749 84 TPIVTSGLVMQLLAGSKI---IEVDNNVREDRALLNGAQKLLGILI 126 (419)
Q Consensus 84 ~PyItAsII~QLL~~~kl---~~l~~~~~~gr~k~~~~tr~ltl~l 126 (419)
.=.++.||++|++.+.-+ .+.+-+.++.+++.++...+.+...
T Consensus 45 l~Li~iSlvLQv~vgilli~~~~~n~~~~~~~~~~~~lnn~~~~~v 90 (104)
T PF04923_consen 45 LTLISISLVLQVVVGILLIFISRYNINKPEKQRRANRLNNWATILV 90 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 345788999999998722 2234444555555555555555443
No 14
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=22.14 E-value=51 Score=34.70 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCceecc-----ccccc
Q 014749 388 ARDVAKQLKVYWSSLLC-----YFWSL 409 (419)
Q Consensus 388 P~diA~~Lkk~g~~I~~-----~~~~~ 409 (419)
-||+++.|+|+|..+.| |||+.
T Consensus 276 Dk~v~~~l~~~gvpVvGvdsLRYfW~~ 302 (456)
T COG3946 276 DKEVAEALQKQGVPVVGVDSLRYFWSE 302 (456)
T ss_pred hHHHHHHHHHCCCceeeeehhhhhhcc
Confidence 38999999999999998 89984
Done!