Query 014751
Match_columns 419
No_of_seqs 125 out of 133
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 17:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_B Snurportin-1; transport 100.0 4E-100 1E-104 759.9 14.5 263 2-288 28-291 (365)
2 1xk5_A Snurportin-1; protein-R 100.0 2.1E-80 7.1E-85 581.5 15.2 190 96-288 1-190 (204)
3 2p8q_B Snurportin-1; heat repe 99.2 3.4E-12 1.2E-16 91.0 2.5 39 4-42 1-40 (40)
4 1ckm_A MRNA capping enzyme; nu 99.0 3.8E-08 1.3E-12 97.7 19.5 240 116-402 75-327 (330)
5 3rtx_A MRNA-capping enzyme; gu 98.7 9.3E-08 3.2E-12 95.8 12.5 254 116-402 63-338 (343)
6 1p16_A GTP--RNA, mRNA capping 98.5 4.7E-07 1.6E-11 91.8 10.7 265 116-402 60-374 (395)
7 3kyh_C MRNA-capping enzyme sub 98.5 1.5E-06 5.2E-11 90.2 14.6 172 116-290 65-263 (461)
8 1vs0_A Putative DNA ligase-lik 98.1 1.4E-05 4.8E-10 78.4 11.1 155 101-283 11-191 (310)
9 3l2p_A DNA ligase 3; DNA ligas 97.8 8E-05 2.7E-09 79.2 10.6 155 101-281 229-422 (579)
10 2cfm_A Thermostable DNA ligase 97.7 7.7E-05 2.6E-09 78.9 9.4 160 101-283 224-425 (561)
11 3gde_A DNA ligase; DNA-binding 97.7 5.3E-05 1.8E-09 80.2 7.7 155 101-280 228-422 (558)
12 2hiv_A Thermostable DNA ligase 97.6 0.00015 5.1E-09 77.6 9.7 161 101-284 255-459 (621)
13 1x9n_A DNA ligase I; 5'-adenyl 97.6 0.00021 7E-09 77.5 10.2 165 101-281 311-516 (688)
14 3vnn_A DNA ligase 4; non-homol 97.2 0.0012 4.1E-08 57.7 9.2 93 125-217 8-129 (139)
15 1a0i_A DNA ligase; DNA replica 96.7 0.0041 1.4E-07 61.5 8.6 91 184-283 144-242 (348)
16 1fvi_A Chlorella virus DNA lig 96.7 0.0017 5.9E-08 63.2 5.7 153 101-283 5-190 (297)
17 3j21_c 50S ribosomal protein L 75.4 2.8 9.5E-05 34.4 4.1 35 125-159 39-79 (87)
18 2l66_A SSO7C4, transcriptional 61.6 6.3 0.00022 28.6 3.1 29 325-353 15-43 (53)
19 4a18_H RPL35A; ribosome, eukar 57.5 11 0.00037 32.3 4.3 35 125-159 52-99 (113)
20 1sqr_A 50S ribosomal protein L 52.5 12 0.00041 31.1 3.6 36 125-160 39-80 (95)
21 1yfb_A Transition state regula 52.4 11 0.00039 28.3 3.3 29 325-353 25-53 (59)
22 4glx_A DNA ligase; inhibitor, 46.0 2.3E+02 0.0078 30.2 13.2 143 183-354 220-387 (586)
23 3fb9_A Uncharacterized protein 45.1 5.6 0.00019 32.8 0.6 31 124-154 23-53 (90)
24 3qwu_A DNA ligase; structural 44.1 35 0.0012 34.5 6.3 132 113-273 70-235 (370)
25 1mvf_D MAZE protein, PEMI-like 39.6 21 0.00073 27.6 3.2 29 325-353 16-44 (82)
26 3iz5_j 60S ribosomal protein L 39.3 19 0.00064 30.7 2.9 36 125-160 49-98 (111)
27 3izc_j 60S ribosomal protein R 29.0 17 0.00058 30.8 1.0 24 137-160 71-94 (107)
28 2ns5_A Partitioning-defective 26.8 24 0.00082 28.7 1.5 14 114-127 9-22 (85)
29 2v31_A Ubiquitin-activating en 25.4 61 0.0021 27.3 3.8 14 332-345 38-51 (112)
30 4ejq_A Kinesin-like protein KI 24.2 1.1E+02 0.0038 26.5 5.4 38 251-288 46-87 (154)
31 2dnt_A Chromodomain protein, Y 21.1 1.5E+02 0.0051 22.9 5.1 28 172-202 18-45 (78)
32 3tpo_A Importin subunit alpha- 20.1 5.9 0.0002 40.1 -4.2 42 3-44 10-54 (529)
No 1
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=100.00 E-value=3.9e-100 Score=759.88 Aligned_cols=263 Identities=37% Similarity=0.691 Sum_probs=228.5
Q ss_pred CCCCCCCcCCCCC-CchHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhccccCCCCCCCCCCCCCCCCCccccCCCCccch
Q 014751 2 APPDLRRPFKRTA-ISDQQRRRELSLQRQSQNRRDAQQQARCLASSVLSLQSQYPDPVPELEIEPESQPQQEAGPLTKDL 80 (419)
Q Consensus 2 aph~~~~~~k~~~-~~~Q~~RR~~~Le~Qk~~R~d~~~~aR~La~~~~~~~~~~~~~~~e~~~~~~~~e~~~~~~~~~~~ 80 (419)
|||||++|||+++ +.+|++||+++|++||++|+|++||||+||+++|+. .+ ++||++++.+ +|
T Consensus 28 a~HPR~sqyK~k~~~~~Q~~RR~~~Le~QK~kR~d~~~haR~La~~~~~~----~~----------seeed~~~~e--em 91 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTG----ME----------SEEENKKDDE--EM 91 (365)
T ss_dssp SCCGGGCC---CTTCCSCCHHHHHHHHHTCCCCSCHHHHHHHHHHTCCC-------------------------------
T ss_pred CCCcchhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc----cc----------cccccccccc--hh
Confidence 8999999999998 558999999999999999999999999999999862 11 1122233333 57
Q ss_pred hhhhhhhccCCcchhhhhhhcccccccccCCCCCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEEeeccCCCCCCC
Q 014751 81 DIRQASKLRGPEVRKWFASQLMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFPSALPSGAR 160 (419)
Q Consensus 81 d~~~~~k~~gk~~rk~ya~qLMlsEWl~dvP~dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~~F~S~LPgG~~ 160 (419)
|++ .|++++++|||||||||||+++|+||+++|+|||||+||||||||++|+|++|+++|+++++|+|+||||++
T Consensus 92 d~~-----~~~k~~k~yanqlMlsEWl~dvP~dL~~~W~~vpcPvGkRcLVVas~G~T~aysk~G~~l~~F~S~LPGG~~ 166 (365)
T 3gjx_B 92 DID-----TVKKLPKHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNR 166 (365)
T ss_dssp ----------CCCCCSSSSCSEEEEECCSCCTTHHHHEEEEEEESSEEEEEEEETTEEEEECTTCCEEEEECCSSTTTCC
T ss_pred ccc-----ccccccHHHHhhHHHHHhcccCCcccccCeeEEeccCCcEEEEEecCceEEEECCCCCEEeeeCCCCCCCCc
Confidence 776 467888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCcEEEeeeEecCCcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceeccccccCC
Q 014751 161 TKDPSGSAQSYCILDCIFHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVYNCD 240 (419)
Q Consensus 161 ~~~~~~~~~~ytILDCIy~e~~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp~~~c~ 240 (419)
+ ++. +++||||||||++.++|||||||||||||++|||+||||||||+|||+|+++++++++.|||+|++||+|+|+
T Consensus 167 ~--~s~-~~~~TILDCIy~e~~~tyYVLDVL~W~g~~l~dCeteFRffWl~SKL~E~~~l~e~s~~np~~Fv~lp~~~C~ 243 (365)
T 3gjx_B 167 R--NST-AKDYTILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCT 243 (365)
T ss_dssp -------CCCCEEEEEEEETTTTEEEEEEEEEETTEECTTSCHHHHHHHHHHHGGGSTTTTSCCSSCCSEEEECCEEECC
T ss_pred c--ccC-CCCCEEEEEEeecCCceEEEEEEeeeCCcccccCchHHHHHHHHHHhhhcccccccccCCCCceeccCCCCcC
Confidence 5 333 7899999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hHhHHHHHhcCCCCCcccEEeEeccccccCCCCcCeeeeccCCCccce
Q 014751 241 QRGLYSAYIESVPYAKDGLLFYNKHAHYQTGNTPLALVWKDEKCSQYV 288 (419)
Q Consensus 241 ~~~L~~~~~~~~p~~~DGLLFYHKea~Y~~G~TPLv~~wkD~~~s~y~ 288 (419)
+++|+.+++..+||++||||||||++||++|.||||+|||+.+++..+
T Consensus 244 ~esL~~~ls~~~pfe~DGLLFYHK~ahY~~G~TPLVgWLkPyMv~diL 291 (365)
T 3gjx_B 244 PESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVL 291 (365)
T ss_dssp HHHHHHHTTCCCSSCEEEEEEEETTCCCCSEEEEEEEEECHHHHTTTT
T ss_pred HHHHHHHhccCCCCccceEEEEeccccccCCCCccceecchhhhHHHh
Confidence 999999999999999999999999999999999999999987776654
No 2
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.1e-80 Score=581.55 Aligned_cols=190 Identities=41% Similarity=0.862 Sum_probs=181.8
Q ss_pred hhhhhcccccccccCCCCCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEEeeccCCCCCCCCCCCCCCCCCcEEEe
Q 014751 96 WFASQLMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFPSALPSGARTKDPSGSAQSYCILD 175 (419)
Q Consensus 96 ~ya~qLMlsEWl~dvP~dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~~F~S~LPgG~~~~~~~~~~~~ytILD 175 (419)
+|||||||||||+|||+||+++|+|||||+||||||||+||+|++|+|+|+++++|+|+||||+++ +++ +++|||||
T Consensus 1 ~ya~~lmlsEWl~diP~dl~~~Wl~vp~P~GkRcLvva~~G~T~~~~k~G~~~~~F~S~LPgG~~~--~~~-~~~~tILD 77 (204)
T 1xk5_A 1 HYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRR--NST-AKDYTILD 77 (204)
T ss_dssp CCSSCSEEEEECCSCCTTHHHHEEEEEEESSEEEEEEEETTEEEEECTTSCEEEEECCSSSSSCSS--SCC-TTCCEEEE
T ss_pred CcccchhhhhhcccCCCccCCCeEEEECCCCcEEEEEecCCeEEEECCCCcEEEEEcccCCCCCcc--cCC-CCCCEEEE
Confidence 389999999999999999999999999999999999999999999999999999999999999975 222 68899999
Q ss_pred eeEecCCcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceeccccccCChHhHHHHHhcCCCCC
Q 014751 176 CIFHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVYNCDQRGLYSAYIESVPYA 255 (419)
Q Consensus 176 CIy~e~~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp~~~c~~~~L~~~~~~~~p~~ 255 (419)
|||++.++|||||||||||||++|||+||||||||+|||+|+++++++++.|+|+|+++|+|+|+.++|+++++..+||+
T Consensus 78 CI~~e~~~tyYVLDvl~W~g~~l~dcetefRffWl~skl~E~~~l~~~s~~n~~~f~~lp~~~c~~~~l~~~~~~~~~~~ 157 (204)
T 1xk5_A 78 CIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFE 157 (204)
T ss_dssp EEEEGGGTEEEEEEEEEETTEECTTSCHHHHHHHHHHHTTTSTTTTSCBTTBSSEEEECCEEECSHHHHHHHHTCCCSSC
T ss_pred EEEecCCcEEEEEEEEEECCceeecCcHHHHHHHHHHHhccccccccccccCCcceEecccccCCHHHHHHHHccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEeEeccccccCCCCcCeeeeccCCCccce
Q 014751 256 KDGLLFYNKHAHYQTGNTPLALVWKDEKCSQYV 288 (419)
Q Consensus 256 ~DGLLFYHKea~Y~~G~TPLv~~wkD~~~s~y~ 288 (419)
+||||||||++||++|.||||+|+|+.+....+
T Consensus 158 ~DGlLFyHK~a~Y~~G~TPLv~WLkp~mlpeiL 190 (204)
T 1xk5_A 158 VDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVL 190 (204)
T ss_dssp EEEEEEEESSCCCCSEEEEEEEEECGGGHHHHH
T ss_pred cceEEEEeccccccCCCCChhhhcchhhchhhh
Confidence 999999999999999999999999987766554
No 3
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=99.22 E-value=3.4e-12 Score=90.97 Aligned_cols=39 Identities=26% Similarity=0.212 Sum_probs=35.7
Q ss_pred CCCCCcCCCCC-CchHHHHHHHHHHHHHHhHHHHHHHHhh
Q 014751 4 PDLRRPFKRTA-ISDQQRRRELSLQRQSQNRRDAQQQARC 42 (419)
Q Consensus 4 h~~~~~~k~~~-~~~Q~~RR~~~Le~Qk~~R~d~~~~aR~ 42 (419)
|||+++||.++ +++|++||+++|++||++|+|++||||+
T Consensus 1 HPR~sqYK~k~~~~~q~~rRr~~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 1 HPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARR 40 (40)
T ss_dssp -CCGGGTTCCCCSCSTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CccHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999996 7889998888999999999999999995
No 4
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=98.95 E-value=3.8e-08 Score=97.74 Aligned_cols=240 Identities=15% Similarity=0.145 Sum_probs=158.9
Q ss_pred CceEEEEecCCcEEEEEee----CCeEEEEcCCCcEEE-eeccCCCCCCCCCCCCCCCCCcEEEeeeEecC--C--cEEE
Q 014751 116 HDWYVFARPAGKRCIVVSS----NGTTVSRERNGSILH-HFPSALPSGARTKDPSGSAQSYCILDCIFHEL--D--QTYY 186 (419)
Q Consensus 116 ~~Wl~vpcPvGkRcLVVas----~G~T~ay~k~G~~l~-~F~S~LPgG~~~~~~~~~~~~ytILDCIy~e~--~--~tyY 186 (419)
.+|++-.=.-|-||+++.. .|.+..++++|..+. .|+. ++.. ...-||||+-+.-. + -+||
T Consensus 75 ~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~-~~~~---------~~~~~vLDGElv~~~~~~~~~f~ 144 (330)
T 1ckm_A 75 NKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKN-IPRV---------LFQGSIFDGELCVDIVEKKFAFV 144 (330)
T ss_dssp SCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSC-CCTT---------GGGCEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChh-hhhc---------cCCCeeEEEEEEEEcCCCeEEEE
Confidence 4799999999999999988 688999999998765 3432 2211 12359999966532 2 3899
Q ss_pred EEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceeccccccCChHhHHHHHhcCC--CCCcccEEeEec
Q 014751 187 VIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVYNCDQRGLYSAYIESV--PYAKDGLLFYNK 264 (419)
Q Consensus 187 VLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp~~~c~~~~L~~~~~~~~--p~~~DGLLFYHK 264 (419)
|.|+|.++|.++.+.+..=|.--|..-+.... .....++.+...+.++.+.+.+...+.... .|..|||+|-+.
T Consensus 145 vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yg~EGlI~K~~ 220 (330)
T 1ckm_A 145 LFDAVVVSGVTVSQMDLASRFFAMKRSLKEFK----NVPEDPAILRYKEWIPLEHPTIIKDHLKKANAIYHTDGLIIMSV 220 (330)
T ss_dssp EEEEEEETTEECTTSCHHHHHHHHHHHHTTCC----CCTTSSSEEEECCCEETTCHHHHHHHHHHHHHHSCEEEEEEEES
T ss_pred EEeeeeeCCcccccCCHHHHHHHHHHHHhhhc----ccCCCCeEEEEEEEEehhHHHHHHHHHHHHhccCCCceEEEeeC
Confidence 99999999999999998888888887774210 011234555556666665444442111222 237999999999
Q ss_pred cccccCCCCcCeeeecc--CCCccceeecCCCCCccccceEEEEEecCCceeccCCCceEEecccchhhhhcCCCCCCee
Q 014751 265 HAHYQTGNTPLALVWKD--EKCSQYVIDTDSKGQVLSQQQVVLELQEDGKLSTSDDPPVIFGCLDGEFIQKSGLQSGSLL 342 (419)
Q Consensus 265 ea~Y~~G~TPLv~~wkD--~~~s~y~~d~d~~g~~~~~q~vvL~~~~~g~l~T~D~~pv~~~~~~~~~i~~~~l~~g~L~ 342 (419)
++.|.+|.+.-++-||. .++-.|+|-. ..| .+-|-...+|.+ |-+|++. ..+.+|.++
T Consensus 221 dspY~~Gr~~~~lKwK~~~~~tvDfvi~~-g~g------~~gl~~~~~~~~-------vp~~~~~------k~~~~g~Iv 280 (330)
T 1ckm_A 221 DEPVIYGRNFNLFKLKPGTHHTIDFIIMS-EDG------TIGIFDPNLRKN-------VPVGKLD------GYYNKGSIV 280 (330)
T ss_dssp SSCCCCEEEEEEEEECSTTCCCEEEEECS-TTC------CEEEEETTTTEE-------EECCCCS------SCCCTTCEE
T ss_pred CCcccCCCccCeEEEEeCCCceEEEEEEc-cCC------eEEEEeCCCCce-------eeeeeee------hhhcCCeEE
Confidence 99999999988899998 6777787762 233 233322112222 4445543 123577777
Q ss_pred eEEEcCCceeeccCceeeeceEEeecCCccccCCchhhHHHHHHhhhcCCCchhHHHhhc
Q 014751 343 KFAIGNGGLSFVDGKLEKSDLNYLGKSNRARMFADSYSKVIFQYMVRHTPLKFDDLLASV 402 (419)
Q Consensus 343 Rf~i~~~~~~~~~~~~~~~~l~~~~~~~~~R~~aDs~sKIlfq~~~r~~p~~i~~~~~~~ 402 (419)
=|+.. .|.|..--++.. +..||+++-+.-=...-..|||.++|+..+
T Consensus 281 E~~~~-------~G~wr~~R~R~D------K~~~n~~~t~~~v~~si~~~vt~eeL~~~~ 327 (330)
T 1ckm_A 281 ECGFA-------DGTWKYIQGRSD------KNQANDRLTYEKTLLNIEENITIDELLDLF 327 (330)
T ss_dssp EEEEE-------TTEEEEEEECTT------CSSCCBHHHHHHHHHHHHHCCCHHHHTTCC
T ss_pred EEEEE-------CCceEEEEEeCC------CCCCCHHHHHHHHHHhhhcCCCHHHHHHhh
Confidence 77775 344444333322 336888877655555567899999999877
No 5
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=98.70 E-value=9.3e-08 Score=95.82 Aligned_cols=254 Identities=16% Similarity=0.272 Sum_probs=127.4
Q ss_pred CceEEEEecCCcEEEEEee-CCeEEEEcCCCcEEE----eeccCCCCCCCCCCCCCCCCCcEEEeeeEec--CC----cE
Q 014751 116 HDWYVFARPAGKRCIVVSS-NGTTVSRERNGSILH----HFPSALPSGARTKDPSGSAQSYCILDCIFHE--LD----QT 184 (419)
Q Consensus 116 ~~Wl~vpcPvGkRcLVVas-~G~T~ay~k~G~~l~----~F~S~LPgG~~~~~~~~~~~~ytILDCIy~e--~~----~t 184 (419)
.+|++-.=.-|-|||+... .|.+..++++|..+. +||..---. ....-||||+-+.- .+ -+
T Consensus 63 ~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~~~~~--------~~~~~tvLDGElV~~~~~g~~~~~ 134 (343)
T 3rtx_A 63 KPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLR--------MHLSNTLLDGEMIIDKVNGQAVPR 134 (343)
T ss_dssp SCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEETTEEE--------EECCSEEEEEEEEEEESSSSEEEE
T ss_pred CCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcchhhh--------ccCCCeEEEEEEEEecCCCcEeeE
Confidence 5788888889999999888 899999999998763 576431100 01234999995542 22 38
Q ss_pred EEEEEEEeeCCcccccccchhhHHHhhhhcccc-----CCCCCCCCCCCCceeccccccCCh-HhHH-HHHhcCCCCCcc
Q 014751 185 YYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAET-----GACDAPSHYYKFRFSTVPVYNCDQ-RGLY-SAYIESVPYAKD 257 (419)
Q Consensus 185 yYVLDvl~W~g~~l~dceteFRffWl~SKl~E~-----~~~~~~s~~n~~~F~~lp~~~c~~-~~L~-~~~~~~~p~~~D 257 (419)
|+|.|+|.++|.++.+++..=|.--|..-+-+- ..........||.+..-++++.+. +.|. .-+........|
T Consensus 135 ~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~~~~~~pf~vr~K~~~~~~~~~~ll~~~~~~~l~~~~d 214 (343)
T 3rtx_A 135 YLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRPKQFFDINISRKLLEGNFAKEVSHEMD 214 (343)
T ss_dssp EEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSCCTTTSSSEEEECCCEEGGGHHHHSCC----------C
T ss_pred EEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccccccCCCcEEEEEEeEehhhHHHHHhhhhHhhcCCCCC
Confidence 999999999999999999999988876544320 000011234567666677777654 2222 122345667899
Q ss_pred cEEeEeccccccCCCCcCeeeeccC--CCccceeecCCCCCccccceEEEEEecCCceeccCCCceEEecccchhhhhcC
Q 014751 258 GLLFYNKHAHYQTGNTPLALVWKDE--KCSQYVIDTDSKGQVLSQQQVVLELQEDGKLSTSDDPPVIFGCLDGEFIQKSG 335 (419)
Q Consensus 258 GLLFYHKea~Y~~G~TPLv~~wkD~--~~s~y~~d~d~~g~~~~~q~vvL~~~~~g~l~T~D~~pv~~~~~~~~~i~~~~ 335 (419)
||+|.+.+ .|.+|.++-++=||.+ ++..|.+--...+... + |- ...|.|+. +|.-+.++.+.. .. .
T Consensus 215 GlIf~~~~-~Y~~G~~~~~lKwKp~~~~tvDF~l~~~~~~~~g----~-~~-~~~~~l~~-~g~~~~f~~~~~---t~-~ 282 (343)
T 3rtx_A 215 GLIFQPIG-KYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEG----L-LP-QNVGLLYV-GGYERPFAQIKV---TK-E 282 (343)
T ss_dssp EEEEEESS-CCCCEEEEEEEEECCSTTCC---------------------------------------------------
T ss_pred eEEEEECc-cCcCCCCcceEEEecCcceEEEEEEEecccCCCC----c-cc-cccceEEE-CCeeeecceeec---cc-c
Confidence 99999999 9999999999999995 7778877432211100 0 00 01122222 111234443310 00 0
Q ss_pred CC--CCCeeeEEEcCCceeeccCceeeeceEEeecCCccccCCchhhHHHHHHhhhcCCCchhHHHhhc
Q 014751 336 LQ--SGSLLKFAIGNGGLSFVDGKLEKSDLNYLGKSNRARMFADSYSKVIFQYMVRHTPLKFDDLLASV 402 (419)
Q Consensus 336 l~--~g~L~Rf~i~~~~~~~~~~~~~~~~l~~~~~~~~~R~~aDs~sKIlfq~~~r~~p~~i~~~~~~~ 402 (419)
++ .|.++=|+.. +|.+.. + |-+.=+..|-++|-+.-=...=..|||.++|+..+
T Consensus 283 l~~ld~~IvEC~~~-------~~~W~~-----~-R~R~DK~~pN~~~tv~~v~~SI~d~Vt~e~L~~~i 338 (343)
T 3rtx_A 283 LKQYDNKIIECKFE-------NNSWVF-----M-RQRIDKSFPNAYNTAMAVCNSISNPVTKEMLFEFI 338 (343)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred chhcCCEEEEEEEE-------CCEEEE-----E-EEcCCCCCCchHHHHHHHHHHHHccCCHHHHHHHH
Confidence 11 2333333322 122211 1 22222456777777666555558899999999876
No 6
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=98.48 E-value=4.7e-07 Score=91.77 Aligned_cols=265 Identities=15% Similarity=0.231 Sum_probs=153.4
Q ss_pred CceEEEEecCCcEEEEEe-----eCCeEEEEcCCCcEEE----eeccCCCCCCCCCCCCCCCCCcEEEeeeEecCC----
Q 014751 116 HDWYVFARPAGKRCIVVS-----SNGTTVSRERNGSILH----HFPSALPSGARTKDPSGSAQSYCILDCIFHELD---- 182 (419)
Q Consensus 116 ~~Wl~vpcPvGkRcLVVa-----s~G~T~ay~k~G~~l~----~F~S~LPgG~~~~~~~~~~~~ytILDCIy~e~~---- 182 (419)
.+|++-+=--|-||+++. ..|.+..++++|..+. +||...--. ++ ......-||||+-+.-.+
T Consensus 60 ~~~~ve~K~DG~R~ll~~~~~~~~g~~v~L~sR~~~~~~i~~~~FP~~~~~~-~~---~~~~~~~~vLDGElV~~~~~~~ 135 (395)
T 1p16_A 60 KDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNET-RE---KPTYHHGTLLDGELVLENRNVS 135 (395)
T ss_dssp SCEEEEEEECSEEEEEEEEEETTTEEEEEEEETTCCEEECCSCCCCSCTTCC-SS---SCCCCSSEEEEEEEEEECCSSS
T ss_pred CCEEEEECccceEEEEEEeecccCCCEEEEEeCCCceEEeccccCCcccccc-cc---hhccCCcceeeeEEEEeccCCC
Confidence 478888888999999988 4467889999999864 676532111 00 000122499998655322
Q ss_pred ---cEEEEEEEEeeCCcccccccchhhHHHhhhhcccc-CC-C---C--CCCCCCCCceeccccccCChHhHHHHHhc--
Q 014751 183 ---QTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAET-GA-C---D--APSHYYKFRFSTVPVYNCDQRGLYSAYIE-- 250 (419)
Q Consensus 183 ---~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~-~~-~---~--~~s~~n~~~F~~lp~~~c~~~~L~~~~~~-- 250 (419)
-+|+|.|+|.++|.++.+.+..=|.--|..-+.+. .. . . ..+...+|.+..-++++... +..++..
T Consensus 136 ~~~~~f~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~pf~v~~~~~~~~~~--~~~~~~~~~ 213 (395)
T 1p16_A 136 EPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFPFKVGFKTMLTSYH--ADDVLSKMD 213 (395)
T ss_dssp CCEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSCCEEEECCCEEGGG--THHHHTTGG
T ss_pred cceeEEEEEEEEEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCccccccccCceEEEEecchhHHH--HHHHHHHHH
Confidence 37999999999999999999988888887744221 00 0 0 01122334444444454432 2333322
Q ss_pred CCCCCcccEEeEeccccccCCCCcCeeeecc--CCCccceeec------C----CCCC------ccccce-EEEEEecCC
Q 014751 251 SVPYAKDGLLFYNKHAHYQTGNTPLALVWKD--EKCSQYVIDT------D----SKGQ------VLSQQQ-VVLELQEDG 311 (419)
Q Consensus 251 ~~p~~~DGLLFYHKea~Y~~G~TPLv~~wkD--~~~s~y~~d~------d----~~g~------~~~~q~-vvL~~~~~g 311 (419)
......|||+|-..++.|.+|.+..++=||- .++-.|++-. + ..|. +.+... +.|-+...|
T Consensus 214 ~~~~g~EGlI~K~~ds~Y~~Gr~~~wlKwK~~~~~TvDfvl~~~~~~~~~~~~~g~G~~~~~~dy~~~p~~~~l~v~~~~ 293 (395)
T 1p16_A 214 KLFHASDGLIYTCAETPYVFGTDQTLLKWKPAEENTVDFQLEFVFNEVQDPDLDERDPTSTYLDYDAKPNLIKLRVWQGS 293 (395)
T ss_dssp GCSSCEEEEEEEESSSCCCSEEEEEEEEECCGGGCCEEEEEEEECEEEECTTSCTTSTTCEEEECSSCCSEEEEEEECST
T ss_pred hcCCCCCeEEEEeCCCCcCCCCccceEEEecCCCeEEEEEEEEEecccccccccccCccccccccccccceeEEEEEeCC
Confidence 3457799999999999999999988888886 6777777651 1 1221 000111 333332221
Q ss_pred ceeccCCCceEEecc---cchhhh--hc-CCCCCCeeeEEEcCCceeeccCceeeeceEEeecCCccccCCchhhHHHHH
Q 014751 312 KLSTSDDPPVIFGCL---DGEFIQ--KS-GLQSGSLLKFAIGNGGLSFVDGKLEKSDLNYLGKSNRARMFADSYSKVIFQ 385 (419)
Q Consensus 312 ~l~T~D~~pv~~~~~---~~~~i~--~~-~l~~g~L~Rf~i~~~~~~~~~~~~~~~~l~~~~~~~~~R~~aDs~sKIlfq 385 (419)
+- =+.++++ ++++-. +. .--+|.++=|+..+. ..|.|..--++. =+..|++++-+.-=
T Consensus 294 ~~------~~~f~~~~ltd~e~~~l~~~~~~~~~~IvEc~~~~~----~~g~wr~~R~R~------DK~~pN~~~t~~~v 357 (395)
T 1p16_A 294 NV------HTDFAKLDLSDDDWERLKALEQPLQGRIAECRQSTT----KKGYWEMLRFRN------DKSNGNHISVVEKI 357 (395)
T ss_dssp TC------EEEEEEECCCHHHHHHHHHSSSCCTTCEEEEEECSS----STTEEEEEEECT------TCSSCCBHHHHHHH
T ss_pred cc------cceeeEEEeCHHHHHHhHhhcccCCCEEEEEEeecC----CCCccEEEEEeC------CCCCcChHHHHHHH
Confidence 10 1233432 222221 11 122567766666420 234344332222 23357877765444
Q ss_pred HhhhcCCCchhHHHhhc
Q 014751 386 YMVRHTPLKFDDLLASV 402 (419)
Q Consensus 386 ~~~r~~p~~i~~~~~~~ 402 (419)
...=..|||.++|+..+
T Consensus 358 l~si~~~vt~eeL~~~~ 374 (395)
T 1p16_A 358 LVSIKDGVKEKEVIEWC 374 (395)
T ss_dssp HHHHHHSCCHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHH
Confidence 44446899999999875
No 7
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.5e-06 Score=90.25 Aligned_cols=172 Identities=19% Similarity=0.296 Sum_probs=114.8
Q ss_pred CceEEEEecCCcEEEEEee------CCeEEEEcCCCcEEE----eeccCCCCCCCCCCCCCCCCCcEEEeeeEecC----
Q 014751 116 HDWYVFARPAGKRCIVVSS------NGTTVSRERNGSILH----HFPSALPSGARTKDPSGSAQSYCILDCIFHEL---- 181 (419)
Q Consensus 116 ~~Wl~vpcPvGkRcLVVas------~G~T~ay~k~G~~l~----~F~S~LPgG~~~~~~~~~~~~ytILDCIy~e~---- 181 (419)
.+|++-.=.-|.|||+... .|.+..++++|.... +||..-...... .-.....-||||+-+.-.
T Consensus 65 ~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~v~~~~FP~~~~~~~~~--~l~~~~~~TlLDGElV~d~~~~ 142 (461)
T 3kyh_C 65 HDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEE--LLETLQDGTLLDGELVIQTNPM 142 (461)
T ss_dssp SCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEEECCCCCCCCSSCCSSG--GGTCCCCSEEEEEEEEEEECTT
T ss_pred CCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEEcccccCCcccccchhh--hhhccCCCeEEEEEEEeccCCC
Confidence 5788888888999998876 378888999998763 676432110000 000123459999944421
Q ss_pred ----CcEEEEEEEEeeCCcccccccchhhHHHhhhhcccc--CCC--C-CCCCCCCCceeccccccC-ChHhHHHHHhcC
Q 014751 182 ----DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAET--GAC--D-APSHYYKFRFSTVPVYNC-DQRGLYSAYIES 251 (419)
Q Consensus 182 ----~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~--~~~--~-~~s~~n~~~F~~lp~~~c-~~~~L~~~~~~~ 251 (419)
.-+|+|.|+|.++|.++.+++..=|.-.|..-+.+. ..+ . ......||.+..-.++++ ..+.|.. ....
T Consensus 143 ~~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~~~p~~~~~~pF~V~~K~~~~~~~~~~l~~-~~~~ 221 (461)
T 3kyh_C 143 TKLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRAAYPNRCTTFPFKISMKHMDFSYQLVKVAK-SLDK 221 (461)
T ss_dssp TCCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHHHCSTTCSCCCSEEEECCCEEGGGHHHHHH-HHTT
T ss_pred CCccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhhccccccccCCcEEEeccchhhhhHHHHHH-hhhh
Confidence 127999999999999999999999998887665321 000 0 011234454444445454 2333333 2345
Q ss_pred CCCCcccEEeEeccccccC-CCCcCeeeeccC--CCccceee
Q 014751 252 VPYAKDGLLFYNKHAHYQT-GNTPLALVWKDE--KCSQYVID 290 (419)
Q Consensus 252 ~p~~~DGLLFYHKea~Y~~-G~TPLv~~wkD~--~~s~y~~d 290 (419)
.....|||+|.+.++.|.+ |.+.-++=||.+ ++-.|++-
T Consensus 222 l~~~~EGLv~k~~~spY~~Ggr~~~~lKwKp~~~nTVDF~L~ 263 (461)
T 3kyh_C 222 LPHLSDGLIFTPVKAPYTAGGKDSLLLKWKPEQENTVDFKLI 263 (461)
T ss_dssp CSSCEEEEEEEESSSBCCSSSEEEEEEECCCTTTCCCEEEEE
T ss_pred ccCCCCeEEEEeCCCCCcCCCcCCCeEEEEcCCCeeEEEEEE
Confidence 7788999999999999999 688999999985 77777664
No 8
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=98.10 E-value=1.4e-05 Score=78.37 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=111.9
Q ss_pred cccccccccCCCCCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEE-eecc------CCCCCCCCCCCCCCCCCcEE
Q 014751 101 LMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILH-HFPS------ALPSGARTKDPSGSAQSYCI 173 (419)
Q Consensus 101 LMlsEWl~dvP~dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~-~F~S------~LPgG~~~~~~~~~~~~ytI 173 (419)
.||+.-. ++|.-...+|++=.==-|-||++....|....+|++|..+. +||. .||. .-+|
T Consensus 11 PmLA~~~-~~~~~~~~~~~~E~K~DG~R~~~~~~~g~v~l~SR~g~~~t~~fPel~~~~~~l~~------------~~~i 77 (310)
T 1vs0_A 11 PMLATHG-TVAGLKASQWAFEGXWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLAD------------HHVV 77 (310)
T ss_dssp CCEEEEC-CCTTCCTTTEEEEEECCSEEEEEEEETTEEEEEETTCCBCGGGCGGGHHHHHHTTT------------CEEE
T ss_pred CeECCCc-CCCccCCCCEEEEEccCcEEEEEEEECCEEEEEcCCCCCchhhchhHHHHHHhCCC------------ccEE
Confidence 5777766 46653356899988889999999999999999999998764 4542 2342 1389
Q ss_pred EeeeEecC------------------CcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceeccc
Q 014751 174 LDCIFHEL------------------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVP 235 (419)
Q Consensus 174 LDCIy~e~------------------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp 235 (419)
|||=..-. .-+|||.|+|.++|.++.+-+..=|.--|.+-+.+. ++...|
T Consensus 78 LDGElv~~d~~g~~~F~~l~~r~~~~~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~------------~i~~~~ 145 (310)
T 1vs0_A 78 LDGEAVVLDSSGVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT------------SLTVPE 145 (310)
T ss_dssp EEEEEECBCTTSCBCHHHHHTCCTTSCCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS------------CCCCCC
T ss_pred EeeEEEEECCCCCcCHHHHHhhccCCcEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCC------------cEEECc
Confidence 99844321 127999999999999999988888877776665431 333445
Q ss_pred cccCChHhHHHHHhcCCCCCcccEEeEeccccccCC-CCcCeeeeccCC
Q 014751 236 VYNCDQRGLYSAYIESVPYAKDGLLFYNKHAHYQTG-NTPLALVWKDEK 283 (419)
Q Consensus 236 ~~~c~~~~L~~~~~~~~p~~~DGLLFYHKea~Y~~G-~TPLv~~wkD~~ 283 (419)
.+..+ +.+.+.....--.+|+++-..++.|++| .|.-++=||-..
T Consensus 146 ~~~~~---~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~ 191 (310)
T 1vs0_A 146 LLPGD---GAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWN 191 (310)
T ss_dssp CCCSS---HHHHHHHHHHTTCCEEEEEETTCCCCTTCEEEEEEEEESSE
T ss_pred cCchH---HHHHHHHHHHcCCceEEEeCCCCCcCCCCcChHHhccchhe
Confidence 55544 3444433334558999999999999999 887777777654
No 9
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=97.78 E-value=8e-05 Score=79.22 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=108.5
Q ss_pred cccccccccCCC---CCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEEeeccC-----------CCCCCCCCCCCC
Q 014751 101 LMLPEWMIDVPD---RLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFPSA-----------LPSGARTKDPSG 166 (419)
Q Consensus 101 LMlsEWl~dvP~---dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~~F~S~-----------LPgG~~~~~~~~ 166 (419)
-||++-..+++. .+..+|++=+==-|-||+|+...|....+||+|..+ |+.. +|++
T Consensus 229 PMLA~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~~--~p~~~~~l~~~l~~~~~~~-------- 298 (579)
T 3l2p_A 229 PMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPV--LPHKVAHFKDYIPQAFPGG-------- 298 (579)
T ss_dssp CCEEEECCCHHHHHHHCTTCEEEEECCCSEEEEEEEETTEEEEECTTSCBC--CGGGTTTGGGTHHHHSTTC--------
T ss_pred CccCCcCCCHHHHHhhCCCCeEEEEccCcEEEEEEEECCEEEEECCCCCcc--ChhHHHHHHHHHHHhcCcC--------
Confidence 366666544433 234578766666699999999999999999999875 4431 2322
Q ss_pred CCCCcEEEee---eEec---------------------CCcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCC
Q 014751 167 SAQSYCILDC---IFHE---------------------LDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDA 222 (419)
Q Consensus 167 ~~~~ytILDC---Iy~e---------------------~~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~ 222 (419)
.-+|||| +++. ..-+|||.|+|.++|.++.+-+..=|.--|.+=+.+.+
T Consensus 299 ---~~~iLDGElv~~d~~~g~~~~F~~L~~~~~~~~~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~---- 371 (579)
T 3l2p_A 299 ---HSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIP---- 371 (579)
T ss_dssp ---SEEEEEEEEEEBCTTTCCBCCGGGGSHHHHHHCSSCCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBT----
T ss_pred ---CceEEEeEEEEEeCCCCcccCHHHHHHHhhhhcccCCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhcCC----
Confidence 1389998 2221 13479999999999999999888888777766654421
Q ss_pred CCCCCCCceeccccccCC-hHhHHHHHhcCCCCCcccEEeEeccccccCCCCcCeeeecc
Q 014751 223 PSHYYKFRFSTVPVYNCD-QRGLYSAYIESVPYAKDGLLFYNKHAHYQTGNTPLALVWKD 281 (419)
Q Consensus 223 ~s~~n~~~F~~lp~~~c~-~~~L~~~~~~~~p~~~DGLLFYHKea~Y~~G~TPLv~~wkD 281 (419)
-+|...|...++ .+.+.+.+.....--..|++.-+.++.|++|.. .|||=
T Consensus 372 ------~~i~~~~~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~ds~Y~~Grr---~WlK~ 422 (579)
T 3l2p_A 372 ------NRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR---HWLKV 422 (579)
T ss_dssp ------TTEEECCEEEECSHHHHHHHHHHHHHTTCCCEEEEESSCCCCTTCE---EEEEE
T ss_pred ------CeEEEeeeEEcCCHHHHHHHHHHHHHhCCCceEEecCcCCCCCCCe---eeEEE
Confidence 245666655554 455666665544456899999999999999997 46663
No 10
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=97.72 E-value=7.7e-05 Score=78.86 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=117.8
Q ss_pred cccccccccCCCC---CCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEE-eecc-------CCCCCCCCCCCCCCCC
Q 014751 101 LMLPEWMIDVPDR---LSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILH-HFPS-------ALPSGARTKDPSGSAQ 169 (419)
Q Consensus 101 LMlsEWl~dvP~d---L~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~-~F~S-------~LPgG~~~~~~~~~~~ 169 (419)
.||+.-..++|+. +..+|++=.==-|-||+++..+|....+||+|..+. +||. .||.
T Consensus 224 PmLA~~~~~~~~~~~~~~~~~~~E~K~DG~R~~i~~~~g~v~l~SR~g~~~t~~fPel~~~~~~~l~~------------ 291 (561)
T 2cfm_A 224 PMLAQQAASIRDALLEMGGEAEFEIKYDGARVQVHKDGSKIIVYSRRLENVTRAIPEIVEALKEAIIP------------ 291 (561)
T ss_dssp CCEEEEESCHHHHHHHTTSCEEEEEECCSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCS------------
T ss_pred CeeCCcCCChhHHHhhcCCcEEEEEeEceEEEEEEEECCEEEEEeCCCCCchhhhhhHHHHHHHhCCC------------
Confidence 3676665555442 344899888889999999999999999999998765 4554 3442
Q ss_pred CcEEEeeeEecC-----------------------------CcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCC
Q 014751 170 SYCILDCIFHEL-----------------------------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGAC 220 (419)
Q Consensus 170 ~ytILDCIy~e~-----------------------------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~ 220 (419)
.-|||||=..-. .-.|||.|+|.++|.++.+.+..=|.--|.+-+.+.
T Consensus 292 ~~~iLDGElv~~d~~g~~~~F~~L~~r~~~~~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~--- 368 (561)
T 2cfm_A 292 EKAIVEGELVAIGENGRPLPFQYVLRRFRRKHNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN--- 368 (561)
T ss_dssp SEEEEEEEEEEBCTTSSBCCTHHHHHHHHCCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC---
T ss_pred cceEeeeEEEEEcCCCcccCHHHHHHHhhcccchhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC---
Confidence 138999833211 126999999999999999988888887777666431
Q ss_pred CCCCCCCCCceeccccccCC-hHhHHHHHhcCCCCCcccEEeEeccccccCC-CCcCeeeeccCC
Q 014751 221 DAPSHYYKFRFSTVPVYNCD-QRGLYSAYIESVPYAKDGLLFYNKHAHYQTG-NTPLALVWKDEK 283 (419)
Q Consensus 221 ~~~s~~n~~~F~~lp~~~c~-~~~L~~~~~~~~p~~~DGLLFYHKea~Y~~G-~TPLv~~wkD~~ 283 (419)
-++...|.+.++ .+.+.+.+.....--.+|+++-..++.|++| .+.-|+=||...
T Consensus 369 --------~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~ 425 (561)
T 2cfm_A 369 --------EKIKVAENLITKKVEEAEAFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM 425 (561)
T ss_dssp --------SSEEECCEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCCCCTTCEEEEEEEECSSC
T ss_pred --------CcEEEeeeEEcCCHHHHHHHHHHHHHcCCceeEEeCCCCCCCCCCcCCCeEEEcccC
Confidence 246677877774 5566666655555668999999999999999 677777777554
No 11
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=97.70 E-value=5.3e-05 Score=80.21 Aligned_cols=155 Identities=17% Similarity=0.125 Sum_probs=112.7
Q ss_pred cccccccccCCCCCC--CceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEE-eeccC-------CCCCCCCCCCCCCCCC
Q 014751 101 LMLPEWMIDVPDRLS--HDWYVFARPAGKRCIVVSSNGTTVSRERNGSILH-HFPSA-------LPSGARTKDPSGSAQS 170 (419)
Q Consensus 101 LMlsEWl~dvP~dL~--~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~-~F~S~-------LPgG~~~~~~~~~~~~ 170 (419)
-||++-...+|+.+. .+|++=+==-|-||+|+...|....+||+|..+. +||.. ||. +
T Consensus 228 PmLA~~~~~~~~~~~~~~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~d~t~~fPel~~~~~~~l~~------------~ 295 (558)
T 3gde_A 228 MMLAQVAESLESAVREMRTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKSVKP------------G 295 (558)
T ss_dssp CCEEEECSCHHHHHHHSSSEEEEEECSSEEEEEEECSSCCEEEETTCCBCGGGCHHHHHHHHHHBCS------------S
T ss_pred CeeCCcCCChHHHhhhccceEEEEeEeeEEEEEEEeCCEEEEEcCCCCcccccchHHHHHHHhhCCC------------C
Confidence 477766555665432 5788777777999999999999999999998765 34432 442 2
Q ss_pred cEEEee---eEecC-------------------------CcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCC
Q 014751 171 YCILDC---IFHEL-------------------------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDA 222 (419)
Q Consensus 171 ytILDC---Iy~e~-------------------------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~ 222 (419)
+|||| ++... .-+|||.|+|.++| ++.+.+..=|.--|.+-+.+
T Consensus 296 -~iLDGElv~~~~g~~~~F~~L~~r~~~~~~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~------ 367 (558)
T 3gde_A 296 -VILDGEVIAVKEGKPMPFQHVLRRFRRKHDVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE------ 367 (558)
T ss_dssp -EEEEEEEEEEETTEEECHHHHHHHHHC--CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC------
T ss_pred -eEEEeEEEEcCCCcCCCHHHHHHHhccccchhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCC------
Confidence 99998 22110 12699999999999 99999888888877766642
Q ss_pred CCCCCCCceeccccccC-ChHhHHHHHhcCCCCCcccEEeEeccccccCC-CCcCeeeec
Q 014751 223 PSHYYKFRFSTVPVYNC-DQRGLYSAYIESVPYAKDGLLFYNKHAHYQTG-NTPLALVWK 280 (419)
Q Consensus 223 ~s~~n~~~F~~lp~~~c-~~~~L~~~~~~~~p~~~DGLLFYHKea~Y~~G-~TPLv~~wk 280 (419)
+-++...|.+.+ +.+.+...+.....--.+|+++-+.++.|++| .+.-|+=||
T Consensus 368 -----~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K 422 (558)
T 3gde_A 368 -----SEKIKLAKQIVTDSVDEVRKMYDEAISAGHEGVMIKLPSSPYIPGKRGKNWLKVK 422 (558)
T ss_dssp -----CSSEEECCEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCBCCTTCEEEEEEEEE
T ss_pred -----CCeEEEeeeEecCCHHHHHHHHHHHHHcCCceeEEecCCCCCCCCCcCCceEEEe
Confidence 124666777776 45666666655554568999999999999999 677666666
No 12
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=97.61 E-value=0.00015 Score=77.63 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=119.7
Q ss_pred cccccccccCCCC---CCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEE-eecc-------CCCCCCCCCCCCCCCC
Q 014751 101 LMLPEWMIDVPDR---LSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILH-HFPS-------ALPSGARTKDPSGSAQ 169 (419)
Q Consensus 101 LMlsEWl~dvP~d---L~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~-~F~S-------~LPgG~~~~~~~~~~~ 169 (419)
.||+.-...+|+. +..+|++=.==-|-||+++...|....++|+|..+. +||. .||.
T Consensus 255 PmLA~~~~~~~~~l~~~~~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~~~t~~fP~l~~~~~~~l~~------------ 322 (621)
T 2hiv_A 255 PMLAERLSNPEEILKKMGGNAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYIEG------------ 322 (621)
T ss_dssp CCEEEECSCHHHHHHHTTTCEEEEEECSSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCC------------
T ss_pred CeeCCccCchhHHHhhcCCcEEEEEEEcceeEEEEEcCCEEEEEcCCCcCcHhhhhhHHHHHHHhCCC------------
Confidence 4777766555543 344798888778999999999999999999998765 4654 4552
Q ss_pred CcEEEeeeEecC-----------------------------CcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCC
Q 014751 170 SYCILDCIFHEL-----------------------------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGAC 220 (419)
Q Consensus 170 ~ytILDCIy~e~-----------------------------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~ 220 (419)
.-+||||=..-. .-+|||.|+|.++|.++.+-+..=|.--|.+-+.+.
T Consensus 323 ~~~iLDGElv~~d~~~g~~l~F~~L~~r~~~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~--- 399 (621)
T 2hiv_A 323 KEFIIEGEIVAIDPESGEMRPFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN--- 399 (621)
T ss_dssp SSEEEEEEEEEBCTTTCCBCCTHHHHHHHHCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC---
T ss_pred cCeEEeEEEEEeecCCCCcCCHHHHhhhccccchhhhcccCceEEEEEeccccCCCccccCCHHHHHHHHHHHhCcC---
Confidence 128999833211 125999999999999999988888888777766541
Q ss_pred CCCCCCCCCceeccccccCC-hHhHHHHHhcCCCCCcccEEeEec--cccccCC-CCcCeeeeccCCC
Q 014751 221 DAPSHYYKFRFSTVPVYNCD-QRGLYSAYIESVPYAKDGLLFYNK--HAHYQTG-NTPLALVWKDEKC 284 (419)
Q Consensus 221 ~~~s~~n~~~F~~lp~~~c~-~~~L~~~~~~~~p~~~DGLLFYHK--ea~Y~~G-~TPLv~~wkD~~~ 284 (419)
-++...|.+.++ .+.+.+.+.....--.+|+++-.. ++.|++| .+.-|+=||....
T Consensus 400 --------~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~ 459 (621)
T 2hiv_A 400 --------DYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQ 459 (621)
T ss_dssp --------SSEEECCEEEESSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCT
T ss_pred --------CcEEEeeeEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCCeEEEechhc
Confidence 245667777774 556777665555566899999999 9999999 6778878886653
No 13
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=97.57 E-value=0.00021 Score=77.52 Aligned_cols=165 Identities=18% Similarity=0.172 Sum_probs=113.6
Q ss_pred cccccccccCCCC---C-CCceEEEEecCCcEEEEEe-eCCeEEEEcCCCcEEE-eecc---CCCCCCCCCCCCCCCCCc
Q 014751 101 LMLPEWMIDVPDR---L-SHDWYVFARPAGKRCIVVS-SNGTTVSRERNGSILH-HFPS---ALPSGARTKDPSGSAQSY 171 (419)
Q Consensus 101 LMlsEWl~dvP~d---L-~~~Wl~vpcPvGkRcLVVa-s~G~T~ay~k~G~~l~-~F~S---~LPgG~~~~~~~~~~~~y 171 (419)
.||+.-..++|+. + ..+|++=.==-|-||+|+. .+|....+||+|..+. +|+- .++.--. .+..-
T Consensus 311 PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~~g~v~l~SR~g~d~t~~fPel~~~l~~~~~------~~~~~ 384 (688)
T 1x9n_A 311 PMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKL------PSVTS 384 (688)
T ss_dssp CCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCBCTTTCHHHHHTSGGGBC------TTCCC
T ss_pred CccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEcCCCeEEEEeCCCCcccccchHHHHHHHHhhc------cCCCC
Confidence 5676655444332 2 2478888877899999999 5788999999998765 4542 1221000 00123
Q ss_pred EEEeeeE---ecC-------------------------CcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCC
Q 014751 172 CILDCIF---HEL-------------------------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAP 223 (419)
Q Consensus 172 tILDCIy---~e~-------------------------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~ 223 (419)
+||||=. +.. .-+|||.|+|.++|.++.+-+..=|.--|..-+.+.+
T Consensus 385 ~ILDGElV~~d~~~g~~~~F~~L~~r~r~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~Pl~eRr~~L~~~~~~~~----- 459 (688)
T 1x9n_A 385 FILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETE----- 459 (688)
T ss_dssp EEEEEEEEEECTTTCSBCCHHHHTTSCSSCCCGGGCCSEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCBT-----
T ss_pred eEEeEEEEEEeCCCCCcCCHHHHHHHhhcccchhhcccceEEEEEechhhcCCccccCCHHHHHHHHHHhhccCC-----
Confidence 8999733 221 1379999999999999999888888777776665421
Q ss_pred CCCCCCceeccccccCC-hHhHHHHHhcCCCCCcccEEeEec--cccccCC-CCcCeeeecc
Q 014751 224 SHYYKFRFSTVPVYNCD-QRGLYSAYIESVPYAKDGLLFYNK--HAHYQTG-NTPLALVWKD 281 (419)
Q Consensus 224 s~~n~~~F~~lp~~~c~-~~~L~~~~~~~~p~~~DGLLFYHK--ea~Y~~G-~TPLv~~wkD 281 (419)
-++...+.+.++ .+.+...+.....--.+||++-+. ++.|++| .+.-|+=||-
T Consensus 460 -----~~i~~~~~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y~~GkRs~~WlK~K~ 516 (688)
T 1x9n_A 460 -----GEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKK 516 (688)
T ss_dssp -----TTEEECCEECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSCTTTCSEEEEEEEH
T ss_pred -----CcEEEEeeEecCCHHHHHHHHHHHHhcCCceeEEeecccCCCCCCCCcCchHheeeh
Confidence 246667777764 556666665555566899999999 9999998 6777666664
No 14
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=97.24 E-value=0.0012 Score=57.71 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=61.9
Q ss_pred CCcEEEEEeeCCeEEEEcCCCcEEE-eeccCCCCCCC---CCCCCCCCCCcEEEee---eEecC----------------
Q 014751 125 AGKRCIVVSSNGTTVSRERNGSILH-HFPSALPSGAR---TKDPSGSAQSYCILDC---IFHEL---------------- 181 (419)
Q Consensus 125 vGkRcLVVas~G~T~ay~k~G~~l~-~F~S~LPgG~~---~~~~~~~~~~ytILDC---Iy~e~---------------- 181 (419)
-|-||++....|....+|++|.-+. +||-..-.|.- -...-..+-.-+|||| ++++.
T Consensus 8 DG~R~q~~~~g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~~~~~~~~~iLDGEiv~~d~~~~~f~~~~~~~~~~~~ 87 (139)
T 3vnn_A 8 DGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGTKFDIKRM 87 (139)
T ss_dssp CCEEEEEEEETTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSCCCTTCCEEEEEEEEEEEETTTTEECCC---------
T ss_pred CeEEEEEEEECCEEEEEeCCCCCchhhccchhhhcchhHHHHHHHhccCCceEeeeEEEEecCCCCCHHHHHhhhhhhhh
Confidence 3899999999999999999998764 46532100000 0000000113489998 22221
Q ss_pred ------CcEEEEEEEEeeCCcccccccchhhHHHhhhhcccc
Q 014751 182 ------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAET 217 (419)
Q Consensus 182 ------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~ 217 (419)
.-+|||.|+|.++|.++.+.+..=|---|.+-+.+.
T Consensus 88 ~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~~~~ 129 (139)
T 3vnn_A 88 VEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPI 129 (139)
T ss_dssp ----CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHCCCB
T ss_pred hhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhcC
Confidence 127899999999999999999888887777766553
No 15
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=96.69 E-value=0.0041 Score=61.48 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=63.0
Q ss_pred EEEEEEEEeeC----Cccc---ccccchhhHHHhhhhccccCCCCCCCCCCCCceeccccccCC-hHhHHHHHhcCCCCC
Q 014751 184 TYYVIDMVCWR----GYSL---YDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVYNCD-QRGLYSAYIESVPYA 255 (419)
Q Consensus 184 tyYVLDvl~W~----g~~l---~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp~~~c~-~~~L~~~~~~~~p~~ 255 (419)
+|||.|||..+ |.++ .+-+..=|.--|.+-+...+ .-.+...|.+.++ .+.+.+++.....--
T Consensus 144 ~~~vFDll~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 214 (348)
T 1a0i_A 144 HIKLYAILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFP---------EIEWQAAESYEVYDMVELQQLYEQKRAEG 214 (348)
T ss_dssp EEEEEEEEEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCT---------TSEEEECCEEEESSHHHHHHHHHHHHTTT
T ss_pred EEEEEeeEeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCC---------CCeEEEeccEecCCHHHHHHHHHHHHHcC
Confidence 69999999999 8877 55555556555555433211 1256778888875 466777776655566
Q ss_pred cccEEeEeccccccCCCCcCeeeeccCC
Q 014751 256 KDGLLFYNKHAHYQTGNTPLALVWKDEK 283 (419)
Q Consensus 256 ~DGLLFYHKea~Y~~G~TPLv~~wkD~~ 283 (419)
.+|+++-..++.|++|.+.-++=||...
T Consensus 215 ~EGlv~K~~ds~Y~~Grr~~wlK~K~~~ 242 (348)
T 1a0i_A 215 HEGLIVKDPMCIYKRGKKSGWWKMKPEN 242 (348)
T ss_dssp CCCEEEECTTCEECSEEEEEEEEESCCE
T ss_pred CceEEEeCCCCCCCCCCccCcEEEeecc
Confidence 8999999999999999765333444333
No 16
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=96.68 E-value=0.0017 Score=63.24 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=99.1
Q ss_pred cccccccccCCCCCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEEeec------cCCCCCCCCCCCCCCCCCcEEE
Q 014751 101 LMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFP------SALPSGARTKDPSGSAQSYCIL 174 (419)
Q Consensus 101 LMlsEWl~dvP~dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~~F~------S~LPgG~~~~~~~~~~~~ytIL 174 (419)
-||+.-...+|+ ...+|++=+==-|-||++ +| ..+|++|..+.. | ..++ -+||
T Consensus 5 PmLA~~~~~~~~-~~~~~~~E~K~DG~R~~~---~g--~l~SR~g~~~t~-p~l~~~~~~~~--------------~~iL 63 (297)
T 1fvi_A 5 PLLAATLENIED-VQFPCLATPKIAGIRSVK---QT--QMLSRTFKPIRN-SVMNRLLTELL--------------PEGS 63 (297)
T ss_dssp CCBCEECCCGGG-CCSSEEEEECCCSEEEEE---SS--SEECTTSCBCSC-HHHHHHHHHHS--------------CTTE
T ss_pred ceeCCccCcCcC-CCCcEEEEeeEeeeeEEe---cC--EEECCCCcccCc-HHHHHHHHhcC--------------CeeE
Confidence 467766655544 236788877778999998 77 899999998652 2 1111 2788
Q ss_pred eeeEe--------------------cCCcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceecc
Q 014751 175 DCIFH--------------------ELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTV 234 (419)
Q Consensus 175 DCIy~--------------------e~~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~l 234 (419)
|+=.. ...-+|||.|+|..+ .+-+..=|.--|.+-+.+.+. ....-.+..+
T Consensus 64 DGElv~~~~~F~~l~~~~~~~~~~~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~-----~~~~~~i~~~ 134 (297)
T 1fvi_A 64 DGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPH-----ILEHAQVKII 134 (297)
T ss_dssp EEEEECTTSCHHHHHHHHHSCC----CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGG-----GGGCSSEEEE
T ss_pred EEEEEECCCCHHHHHHHhccCCCCCccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCC-----ccccceEEEc
Confidence 98443 123479999999776 333444455555544433211 0000145566
Q ss_pred c--cccCC-hHhHHHHHhcCCCCCcccEEeEeccccccCCCCc----CeeeeccCC
Q 014751 235 P--VYNCD-QRGLYSAYIESVPYAKDGLLFYNKHAHYQTGNTP----LALVWKDEK 283 (419)
Q Consensus 235 p--~~~c~-~~~L~~~~~~~~p~~~DGLLFYHKea~Y~~G~TP----Lv~~wkD~~ 283 (419)
| .+.++ .+.+.+.+.....--.+|+++-..++.|++|.+. -++=||...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~GRs~~~~g~wlK~K~~~ 190 (297)
T 1fvi_A 135 PLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFK 190 (297)
T ss_dssp ECCCEEECSHHHHHHHHHHHHHTTCCSEEEECTTCCCCSSBCCTTTTSSEEECCCE
T ss_pred CcceEecCCHHHHHHHHHHHHHCCCcEEEEECCCCCcCCCCCCCCCCCeEEECCCC
Confidence 6 77764 5667766655555568999999999999999888 777777543
No 17
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=75.44 E-value=2.8 Score=34.42 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=26.9
Q ss_pred CCcEEEEEeeCC------eEEEEcCCCcEEEeeccCCCCCC
Q 014751 125 AGKRCIVVSSNG------TTVSRERNGSILHHFPSALPSGA 159 (419)
Q Consensus 125 vGkRcLVVas~G------~T~ay~k~G~~l~~F~S~LPgG~ 159 (419)
.||||.-|...| .|...-.+|-...+|.++||+-.
T Consensus 39 lGKrvayv~~~g~~iwGKVtr~HGnsGvVrAkF~~nLP~~a 79 (87)
T 3j21_c 39 IGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPGQA 79 (87)
T ss_dssp TTCEEEECCSSSCCEEEEEEEECCSSSCEEEEESSCCCSSC
T ss_pred cCceEEEEeCCCCEEEEEEEeeeCCCCeEEEEeCCCCChHH
Confidence 577777776555 35566779999999999999854
No 18
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=61.56 E-value=6.3 Score=28.59 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=26.1
Q ss_pred cccchhhhhcCCCCCCeeeEEEcCCceee
Q 014751 325 CLDGEFIQKSGLQSGSLLKFAIGNGGLSF 353 (419)
Q Consensus 325 ~~~~~~i~~~~l~~g~L~Rf~i~~~~~~~ 353 (419)
++|.++..+.|+++|+-+.|.+.++++.+
T Consensus 15 ~IPk~ir~~lgi~~Gd~v~i~~~~~~ivl 43 (53)
T 2l66_A 15 TIPAKVRQKFQIKEGDLVKVTFDESEGVV 43 (53)
T ss_dssp CCCHHHHHHSCCCTTCEEEEEECSSSCCE
T ss_pred EeCHHHHHHcCcCCCCEEEEEEECCEEEE
Confidence 46889999999999999999999888776
No 19
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=57.54 E-value=11 Score=32.29 Aligned_cols=35 Identities=31% Similarity=0.537 Sum_probs=27.0
Q ss_pred CCcEEEEEe--e--CC---------eEEEEcCCCcEEEeeccCCCCCC
Q 014751 125 AGKRCIVVS--S--NG---------TTVSRERNGSILHHFPSALPSGA 159 (419)
Q Consensus 125 vGkRcLVVa--s--~G---------~T~ay~k~G~~l~~F~S~LPgG~ 159 (419)
+||||.-|. . +| .|...-.+|-+..+|.++||+-.
T Consensus 52 lGKrvayvykak~~~g~k~RviwGKVtR~HGnsGvVrAkF~~nLP~kA 99 (113)
T 4a18_H 52 QGKRVVYIYKGQKKNGSNYRTIWGRIGKAHGNNGVAVARFAHNLPPQA 99 (113)
T ss_dssp TTCEEEEEEEEEEETTEEEEEEEEEEEEEETTTTEEEEEESSCCCGGG
T ss_pred cCCeEEEEEecCCCCCCeEEEEEEEEEeeeCCCCeEEEEeCCCCChHH
Confidence 699998864 2 23 35567779999999999999854
No 20
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=52.46 E-value=12 Score=31.15 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=26.8
Q ss_pred CCcEEEEEeeC-----C-eEEEEcCCCcEEEeeccCCCCCCC
Q 014751 125 AGKRCIVVSSN-----G-TTVSRERNGSILHHFPSALPSGAR 160 (419)
Q Consensus 125 vGkRcLVVas~-----G-~T~ay~k~G~~l~~F~S~LPgG~~ 160 (419)
+||||.-|..- | .|..--.+|-+..+|.++||+-+-
T Consensus 39 lGKrvayvyka~rviwGKVtR~HGnsGvVrAkF~~nLP~kA~ 80 (95)
T 1sqr_A 39 IGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPGQAL 80 (95)
T ss_dssp TTCEEEECCSTTCCEEEEEEEESSSSSCEEEECSSCCSSSCT
T ss_pred cCCeEEEEECCCCEEEEEEEeeeCCCCEEEEEeCCCCChHHc
Confidence 58888877643 3 245567799999999999999553
No 21
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=52.37 E-value=11 Score=28.25 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=26.0
Q ss_pred cccchhhhhcCCCCCCeeeEEEcCCceee
Q 014751 325 CLDGEFIQKSGLQSGSLLKFAIGNGGLSF 353 (419)
Q Consensus 325 ~~~~~~i~~~~l~~g~L~Rf~i~~~~~~~ 353 (419)
++|.++....|+++|+-+.|.+.++++.+
T Consensus 25 tIPkeiR~~Lgi~~Gd~l~i~~~~~~IiL 53 (59)
T 1yfb_A 25 VIPIELRRTLGIAEKDALEIYVDDEKIIL 53 (59)
T ss_dssp ECCHHHHHHTTCCTTCEEEEEEETTEEEE
T ss_pred EeCHHHHHHcCCCCCCEEEEEEECCEEEE
Confidence 36889999999999999999999888776
No 22
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=45.99 E-value=2.3e+02 Score=30.19 Aligned_cols=143 Identities=15% Similarity=0.240 Sum_probs=81.8
Q ss_pred cEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceeccccc-cC-ChHhHHHHH------hcCCCC
Q 014751 183 QTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVY-NC-DQRGLYSAY------IESVPY 254 (419)
Q Consensus 183 ~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp~~-~c-~~~~L~~~~------~~~~p~ 254 (419)
-.||+.++..|.+..+.+...+. +-||++ .+ |...|++ -| +.+.+...+ ....||
T Consensus 220 L~f~~y~v~~~~~~~~~~t~~e~-l~~L~~----~G------------f~v~~~~~~~~~~~~~~~~~~~~~~~R~~l~y 282 (586)
T 4glx_A 220 LTFFCYGVGVLEGGELPDTHLGR-LLQFKK----WG------------LPVSDRVTLCESAEEVLAFYHKVEEDRPTLGF 282 (586)
T ss_dssp CEEEEEEEEEEESSCCCSBHHHH-HHHHHH----TT------------CCCCTTCEEESSHHHHHHHHHHHHHHGGGSSS
T ss_pred cceeEeeeeeeecccccccHHHH-HHHHHH----cC------------CCCccceeeeccHHHHHHHHHHHHHhhhcccc
Confidence 57899999998887765544332 334432 21 1122221 12 233343332 357899
Q ss_pred CcccEEeEeccccccC--C---CCcCe-eeeccCCCccceeecCCCCCccccceEEEEEecCCcee--------ccCCCc
Q 014751 255 AKDGLLFYNKHAHYQT--G---NTPLA-LVWKDEKCSQYVIDTDSKGQVLSQQQVVLELQEDGKLS--------TSDDPP 320 (419)
Q Consensus 255 ~~DGLLFYHKea~Y~~--G---~TPLv-~~wkD~~~s~y~~d~d~~g~~~~~q~vvL~~~~~g~l~--------T~D~~p 320 (419)
++||+++-..+-.++. | .+|-+ ..||=+. +-+...=..|..++--.|.+. +.+|
T Consensus 283 ~iDGiVikvn~~~~~~~lG~ts~~PrwAiA~Kfp~----------e~~~T~v~~I~~qVGRTG~iTPvA~lePV~l~G-- 350 (586)
T 4glx_A 283 DIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPA----------QEQMTFVRDVEFQVGRTGAITPVARLEPVHVAG-- 350 (586)
T ss_dssp CEEEEEEEESBHHHHHHHCBCSSSBSSEEEECCCC----------CEEEEEEEEEEEEECTTSBEEEEEEEEEEEETT--
T ss_pred cCCceEEEecchhhhhccCCccCCCCeeEEEcccc----------hhheeEeEEEEEecCCceEEEEEEEEeeEEeCC--
Confidence 9999999888766542 3 34553 5666211 001011122444444466543 4555
Q ss_pred eEEe--c-ccchhhhhcCCCCCCeeeEEEcCCceeec
Q 014751 321 VIFG--C-LDGEFIQKSGLQSGSLLKFAIGNGGLSFV 354 (419)
Q Consensus 321 v~~~--~-~~~~~i~~~~l~~g~L~Rf~i~~~~~~~~ 354 (419)
+.+. + =|..+|...++++|+.+...-.+++|.-+
T Consensus 351 ~tVsraTLhN~~~I~~~di~iGD~V~V~rAGdVIP~I 387 (586)
T 4glx_A 351 VLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQV 387 (586)
T ss_dssp EEEEEEECCCHHHHHHHTCEETCEEEEEEETTTEEEE
T ss_pred EEEEecccCCHHHHHhcCCCcCCEEEEEECCCcCccc
Confidence 3333 3 25588999999999999998888888653
No 23
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=45.10 E-value=5.6 Score=32.77 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=28.7
Q ss_pred cCCcEEEEEeeCCeEEEEcCCCcEEEeeccC
Q 014751 124 PAGKRCIVVSSNGTTVSRERNGSILHHFPSA 154 (419)
Q Consensus 124 PvGkRcLVVas~G~T~ay~k~G~~l~~F~S~ 154 (419)
=+|+|+.|.|.+|.-+...+.|.+...|||.
T Consensus 23 ~vG~~V~l~An~GRkK~~er~GvL~etYPSv 53 (90)
T 3fb9_A 23 HEGQVVEMTLENGRKRQKNRLGKLIEVYPSL 53 (90)
T ss_dssp TTTSEEEEEECCSSSCCSCEEEEEEEECSSE
T ss_pred cCCCEEEEEecCCcccEEEEEEEEEEecCcE
Confidence 4799999999999999999999999999875
No 24
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=44.06 E-value=35 Score=34.52 Aligned_cols=132 Identities=11% Similarity=0.183 Sum_probs=76.3
Q ss_pred CCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEE-----------E-eeccCCCCCCCCCCCCCCCCCcEEEeee---
Q 014751 113 RLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSIL-----------H-HFPSALPSGARTKDPSGSAQSYCILDCI--- 177 (419)
Q Consensus 113 dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l-----------~-~F~S~LPgG~~~~~~~~~~~~ytILDCI--- 177 (419)
.+..+|+|--==-|-++-++.-+|...++|++|++. . .|...+|+ .+||+=
T Consensus 70 ~f~~~~~veEKLDG~NVRi~~~dG~ilA~TRgG~icP~tT~r~~~~~~~~f~~~~P~--------------l~LdGEl~g 135 (370)
T 3qwu_A 70 QFEAPFWVEEKVDGYNTRIFKYGDNYYALSRGGFICPFTTDRLPDLIDLRILDENPD--------------LVICAEVAG 135 (370)
T ss_dssp HCSSCEEEEEECSSEEEEEEEETTEEEEECTTSCBCHHHHHHHHHHCCCHHHHHCTT--------------EEEEEEEEC
T ss_pred cCCCcEEEEEeeCCeEEEEEEECCEEEEEcCCCcccCcchhhhhhhcCchhhhcCCC--------------eEEEEEEEc
Confidence 345688888777899999989999999999999862 2 35555553 566661
Q ss_pred -----------EecCCcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceeccccccCC---hHh
Q 014751 178 -----------FHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVYNCD---QRG 243 (419)
Q Consensus 178 -----------y~e~~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp~~~c~---~~~ 243 (419)
|.-..-+|||.||..-.+.-.. ..+=|.-| +++.+. + ....+..++++ .+.
T Consensus 136 ~~npy~~~s~~y~~~~i~F~VFDV~d~~~~~~L--~~~eR~~l----l~~~~l--------p-~V~ii~~~~~~~~~~~~ 200 (370)
T 3qwu_A 136 PENPYIEESPPYVKEDVQLFVFDFMKKNEQGFL--SQEEKMEL----IEKYNL--------P-HVEILGRFTASEEGIKK 200 (370)
T ss_dssp TTCSSCSCCCTTCCSSCEEEEEEEEETTCCSCC--CHHHHHHH----HHHHTC--------C-BCCEEEEECSSHHHHHH
T ss_pred CCCCccccCCcccccCceEEEEeCccccCCCcC--CHHHHHHH----HHHCCC--------C-CccEEEEeCCCCCCHHH
Confidence 1123569999999974321000 12223333 222221 0 11234455665 344
Q ss_pred HHHHHhcCCCCCcccEEeEecc-----ccccCCCC
Q 014751 244 LYSAYIESVPYAKDGLLFYNKH-----AHYQTGNT 273 (419)
Q Consensus 244 L~~~~~~~~p~~~DGLLFYHKe-----a~Y~~G~T 273 (419)
+.+++..-..--..|+++=..+ +.|+.+.|
T Consensus 201 l~~~l~~l~~~g~EGVVlK~~~~~~~~~KY~t~~s 235 (370)
T 3qwu_A 201 IKEILKRFNEEGREGVVFKEDSERNKRAKYITSYA 235 (370)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSSSCCEEEEECHHH
T ss_pred HHHHHHHHHhCCCcEEEEecCccCCCceeeecCCC
Confidence 5555431111247788887776 56666554
No 25
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=39.56 E-value=21 Score=27.64 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=26.1
Q ss_pred cccchhhhhcCCCCCCeeeEEEcCCceee
Q 014751 325 CLDGEFIQKSGLQSGSLLKFAIGNGGLSF 353 (419)
Q Consensus 325 ~~~~~~i~~~~l~~g~L~Rf~i~~~~~~~ 353 (419)
++|.++..+.||.+|+-+-+.+.++++.+
T Consensus 16 ~iPk~~~~~lgl~~gd~v~i~~~~~~iii 44 (82)
T 1mvf_D 16 RIPATLMQALNLNIDDEVKIDLVDGKLII 44 (82)
T ss_dssp ECCHHHHHHTTCCTTCBEEEEEETTEEEE
T ss_pred EECHHHHHHcCCCCCCEEEEEEECCEEEE
Confidence 68999999999999999999988887766
No 26
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=39.27 E-value=19 Score=30.73 Aligned_cols=36 Identities=33% Similarity=0.418 Sum_probs=26.5
Q ss_pred CCcEEEEEee-------------CC-eEEEEcCCCcEEEeeccCCCCCCC
Q 014751 125 AGKRCIVVSS-------------NG-TTVSRERNGSILHHFPSALPSGAR 160 (419)
Q Consensus 125 vGkRcLVVas-------------~G-~T~ay~k~G~~l~~F~S~LPgG~~ 160 (419)
.||||.-|.. .| .|...-.+|-...+|.++||+-.-
T Consensus 49 lGKrvayvykak~~~~g~k~R~iwGKVtR~HGnsGvVrAkF~~nLP~kA~ 98 (111)
T 3iz5_j 49 AGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98 (111)
T ss_dssp SCCCCEECCCCCSSSCCCCSCCEECEEEEESSSSSCEEEECSSCCSTTCC
T ss_pred cCcEEEEEEeccccCCCceEEEEEEEEEeeeCCCCEEEEEeCCCCChHHc
Confidence 5888877642 13 355667789999999999999543
No 27
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=28.98 E-value=17 Score=30.84 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=18.9
Q ss_pred eEEEEcCCCcEEEeeccCCCCCCC
Q 014751 137 TTVSRERNGSILHHFPSALPSGAR 160 (419)
Q Consensus 137 ~T~ay~k~G~~l~~F~S~LPgG~~ 160 (419)
.|...-.+|-...+|.++||+-.-
T Consensus 71 VtR~HGnsGvVrAkF~~nLP~kA~ 94 (107)
T 3izc_j 71 VTRTHGNSGVVRATFRNNLPAKTF 94 (107)
T ss_dssp EEECSSSSSCEEECCCSCCSTTCC
T ss_pred EEeeeCCCCeEEEEeCCCCChHHc
Confidence 355566789999999999999543
No 28
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=26.80 E-value=24 Score=28.68 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=11.9
Q ss_pred CCCceEEEEecCCc
Q 014751 114 LSHDWYVFARPAGK 127 (419)
Q Consensus 114 L~~~Wl~vpcPvGk 127 (419)
|+..|++|||-.|+
T Consensus 9 fg~~~vvVPC~dg~ 22 (85)
T 2ns5_A 9 FGRTRVDVPCGDGR 22 (85)
T ss_dssp ETTEEEEEEESSSC
T ss_pred ECCEEEEEECCCCc
Confidence 57899999998884
No 29
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=25.41 E-value=61 Score=27.27 Aligned_cols=14 Identities=21% Similarity=0.790 Sum_probs=12.4
Q ss_pred hhcCCCCCCeeeEE
Q 014751 332 QKSGLQSGSLLKFA 345 (419)
Q Consensus 332 ~~~~l~~g~L~Rf~ 345 (419)
..|+|..|+.++|+
T Consensus 38 ~~H~l~dGD~V~Fs 51 (112)
T 2v31_A 38 ARHGFETGDFVSFS 51 (112)
T ss_dssp CCCCCCTTCEEEEC
T ss_pred CccCCcCCCEEEEE
Confidence 57999999999995
No 30
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=24.15 E-value=1.1e+02 Score=26.46 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCCCCcccEEeEeccccccCCCCc----CeeeeccCCCccce
Q 014751 251 SVPYAKDGLLFYNKHAHYQTGNTP----LALVWKDEKCSQYV 288 (419)
Q Consensus 251 ~~p~~~DGLLFYHKea~Y~~G~TP----Lv~~wkD~~~s~y~ 288 (419)
.-|....-+++|.+++.+.-|..+ --..+.+..+|+..
T Consensus 46 ~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H 87 (154)
T 4ejq_A 46 EDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEH 87 (154)
T ss_dssp CCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEE
T ss_pred CCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCccccc
Confidence 456667888999999999999865 23467788887765
No 31
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=21.09 E-value=1.5e+02 Score=22.90 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEeeeEecCCcEEEEEEEEeeCCccccccc
Q 014751 172 CILDCIFHELDQTYYVIDMVCWRGYSLYDCT 202 (419)
Q Consensus 172 tILDCIy~e~~~tyYVLDvl~W~g~~l~dce 202 (419)
.|||.-......+.| .+.|+|++..+|+
T Consensus 18 ~Il~~r~~~~g~~~Y---lVKWkGy~~~~~T 45 (78)
T 2dnt_A 18 RIVDKRKNKKGKTEY---LVRWKGYDSEDDT 45 (78)
T ss_dssp CEEEEEECTTSCEEE---EECBTTBCGGGCE
T ss_pred EEEEEEEcCCCcEEE---EEEECCCCccCCc
Confidence 388886654456767 5799999876653
No 32
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=20.08 E-value=5.9 Score=40.08 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=8.8
Q ss_pred CCCCCCcCCCCCCchHH---HHHHHHHHHHHHhHHHHHHHHhhhh
Q 014751 3 PPDLRRPFKRTAISDQQ---RRRELSLQRQSQNRRDAQQQARCLA 44 (419)
Q Consensus 3 ph~~~~~~k~~~~~~Q~---~RR~~~Le~Qk~~R~d~~~~aR~La 44 (419)
|-.|+..||.++....+ +|++...|..|+||.+.+..-|++.
T Consensus 10 ~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~ 54 (529)
T 3tpo_A 10 PAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVS 54 (529)
T ss_dssp ----------------------------------CCSCSCCCCCC
T ss_pred cHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCC
Confidence 44588999988752222 2234678888999999988878764
Done!