Query 014753
Match_columns 419
No_of_seqs 163 out of 439
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 17:12:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 2.4E-28 8.2E-33 190.7 6.4 60 244-304 2-61 (64)
2 2yus_A SWI/SNF-related matrix- 90.2 0.79 2.7E-05 36.2 6.7 50 244-299 13-62 (79)
3 2hzd_A Transcriptional enhance 88.6 0.32 1.1E-05 39.8 3.4 56 248-305 5-77 (82)
4 2yum_A ZZZ3 protein, zinc fing 87.7 0.98 3.4E-05 34.3 5.5 52 248-302 7-61 (75)
5 2cu7_A KIAA1915 protein; nucle 86.8 1.6 5.4E-05 33.2 6.1 50 247-302 7-56 (72)
6 1x41_A Transcriptional adaptor 83.3 3.4 0.00012 30.4 6.4 50 246-301 5-55 (60)
7 1ity_A TRF1; helix-turn-helix, 80.1 6.3 0.00022 29.5 7.0 56 242-300 3-58 (69)
8 2cqr_A RSGI RUH-043, DNAJ homo 78.6 7.8 0.00027 30.3 7.3 54 245-301 14-68 (73)
9 2cqq_A RSGI RUH-037, DNAJ homo 76.7 6.5 0.00022 30.6 6.3 48 249-302 8-58 (72)
10 2iw5_B Protein corest, REST co 74.7 5.4 0.00018 38.1 6.3 54 245-304 129-182 (235)
11 2xag_B REST corepressor 1; ami 74.0 4.6 0.00016 41.7 6.2 52 247-304 378-429 (482)
12 2elk_A SPCC24B10.08C protein; 71.4 5.5 0.00019 29.2 4.5 46 250-300 10-56 (58)
13 1guu_A C-MYB, MYB proto-oncoge 66.0 16 0.00056 25.6 5.9 46 249-299 3-48 (52)
14 3sjm_A Telomeric repeat-bindin 65.7 17 0.00059 27.3 6.3 48 247-297 9-56 (64)
15 2d9a_A B-MYB, MYB-related prot 64.0 25 0.00086 25.4 6.7 50 245-299 4-53 (60)
16 1wgx_A KIAA1903 protein; MYB D 61.0 18 0.00061 28.7 5.8 52 251-305 10-62 (73)
17 1gvd_A MYB proto-oncogene prot 54.9 35 0.0012 23.9 6.0 46 249-299 3-48 (52)
18 1w0t_A Telomeric repeat bindin 52.9 47 0.0016 23.5 6.4 48 249-299 2-49 (53)
19 2dim_A Cell division cycle 5-l 46.4 61 0.0021 24.1 6.4 48 247-299 7-54 (70)
20 2eqr_A N-COR1, N-COR, nuclear 45.5 18 0.0006 26.8 3.3 45 245-295 8-52 (61)
21 2aje_A Telomere repeat-binding 43.2 58 0.002 27.2 6.4 52 243-297 7-60 (105)
22 2cjj_A Radialis; plant develop 39.8 35 0.0012 27.8 4.5 47 250-301 9-58 (93)
23 2yqk_A Arginine-glutamic acid 39.1 26 0.00088 26.2 3.4 52 247-306 7-58 (63)
24 2din_A Cell division cycle 5-l 35.9 74 0.0025 23.3 5.4 47 248-301 8-54 (66)
25 2roh_A RTBP1, telomere binding 30.2 1.4E+02 0.0049 25.5 7.0 54 243-302 25-80 (122)
26 1gv2_A C-MYB, MYB proto-oncoge 28.3 1.3E+02 0.0044 23.6 6.0 46 249-299 4-49 (105)
27 3osg_A MYB21; transcription-DN 26.9 1.4E+02 0.0049 24.4 6.2 50 245-300 7-56 (126)
28 2crg_A Metastasis associated p 25.2 62 0.0021 24.7 3.5 47 245-296 4-50 (70)
29 4eef_G F-HB80.4, designed hema 24.0 21 0.00073 28.7 0.7 45 250-297 21-66 (74)
30 2juh_A Telomere binding protei 22.8 1.5E+02 0.0053 25.2 5.8 54 242-298 10-65 (121)
31 2k9n_A MYB24; R2R3 domain, DNA 22.7 1.8E+02 0.0061 23.1 5.9 45 250-299 2-46 (107)
32 1gv2_A C-MYB, MYB proto-oncoge 21.7 1.7E+02 0.0059 22.8 5.6 60 230-299 41-100 (105)
33 1qgp_A Protein (double strande 21.6 1.1E+02 0.0037 23.3 4.2 45 252-299 11-55 (77)
34 2k9n_A MYB24; R2R3 domain, DNA 20.6 1.7E+02 0.0057 23.2 5.3 61 230-300 38-98 (107)
35 2lm1_A Lysine-specific demethy 20.3 46 0.0016 26.7 2.0 33 254-287 44-80 (107)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=2.4e-28 Score=190.72 Aligned_cols=60 Identities=47% Similarity=0.790 Sum_probs=57.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhcccc
Q 014753 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (419)
Q Consensus 244 s~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKYRl~k~ 304 (419)
+.+|+||+||+|||++||+||++|| .|+||||+||++|+|+|||++||||||||||+...
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999 79999999999999999999999999999998754
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=90.22 E-value=0.79 Score=36.22 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014753 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (419)
Q Consensus 244 s~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKY 299 (419)
..+..+-.||+|=+.+|++||+..|+- =+.|-+.|+ +=|..+|+.|-++|
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYKDD----WNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHcC--CCCHHHHHHHHHHh
Confidence 344556789999999999999999943 367777764 79999999999888
No 3
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=88.61 E-value=0.32 Score=39.77 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=37.0
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhh---c-C-------------CCCccHHHHHHhhhhhhccccC
Q 014753 248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLEL---M-D-------------VKDLTLAHVKSHLQMYRTVKTT 305 (419)
Q Consensus 248 pRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel---M-n-------------V~gLTr~hVkSHLQKYRl~k~t 305 (419)
..-+|.++|-..|++|++.+- .. -+=|.+|.. | | -+-=|+.+|+||||.-|..+..
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred cCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 456899999999999999885 11 111222311 1 1 1456889999999987765443
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.65 E-value=0.98 Score=34.33 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=40.1
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCCh---HHHHhhcCCCCccHHHHHHhhhhhhcc
Q 014753 248 PRMRWTTTLHARFVHAVELLGGHERATP---KSVLELMDVKDLTLAHVKSHLQMYRTV 302 (419)
Q Consensus 248 pRlrWT~ELH~rFV~AVeqLGG~dkAtP---K~ILelMnV~gLTr~hVkSHLQKYRl~ 302 (419)
.+-.||+|=+++|++||+.+| .+...| +.|-+.| +|=|-.+|+.|-|+|-..
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 445799999999999999999 333222 3455554 689999999999999654
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=86.76 E-value=1.6 Score=33.18 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=40.6
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhcc
Q 014753 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV 302 (419)
Q Consensus 247 KpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKYRl~ 302 (419)
..+-.||+|=++.|++||+++|- .=+.|-+.| +|=|..+|+.|.++|-..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999993 446676654 789999999999988543
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=83.35 E-value=3.4 Score=30.36 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=39.8
Q ss_pred CCCCcccCHHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCccHHHHHHhhhhhhc
Q 014753 246 RAPRMRWTTTLHARFVHAVELLG-GHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301 (419)
Q Consensus 246 kKpRlrWT~ELH~rFV~AVeqLG-G~dkAtPK~ILelMnV~gLTr~hVkSHLQKYRl 301 (419)
...|-.||+|=.+++++||+.+| +- =+.|-+.| ++=|-.+|+.|-++|=.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34556799999999999999999 32 35677766 68899999999888743
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=80.09 E-value=6.3 Score=29.52 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=43.9
Q ss_pred cCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhh
Q 014753 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (419)
Q Consensus 242 krs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKYR 300 (419)
+...++.|-.||+|=-++.+++|+++|. -.=+.|.+.|...|=|-.+|+-+-..|-
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 3456778889999999999999999991 1346788888766889999987766653
No 8
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=78.58 E-value=7.8 Score=30.31 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=41.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cCCCCccHHHHHHhhhhhhc
Q 014753 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQMYRT 301 (419)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~gLTr~hVkSHLQKYRl 301 (419)
.+..+-.||.|=..+|++||..+| +-+|.+--.+ .-|+|=|-.+|+.|-+++..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344556799999999999999998 2377655443 24579999999999887754
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=76.73 E-value=6.5 Score=30.62 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=38.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChH---HHHhhcCCCCccHHHHHHhhhhhhcc
Q 014753 249 RMRWTTTLHARFVHAVELLGGHERATPK---SVLELMDVKDLTLAHVKSHLQMYRTV 302 (419)
Q Consensus 249 RlrWT~ELH~rFV~AVeqLGG~dkAtPK---~ILelMnV~gLTr~hVkSHLQKYRl~ 302 (419)
+-.||.|=..+|+.||..+++ -+|. +|-+.| |=|-++|+.|-+++...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 447999999999999999983 3455 466666 57999999998887554
No 10
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=74.68 E-value=5.4 Score=38.06 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=44.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhcccc
Q 014753 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (419)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKYRl~k~ 304 (419)
..+..-+||+|=++.|++|+...|- -=..|-++ |++=|..+|+.|..+||....
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence 4466789999999999999999992 25667776 578999999999999986543
No 11
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=74.00 E-value=4.6 Score=41.70 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=43.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhcccc
Q 014753 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (419)
Q Consensus 247 KpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKYRl~k~ 304 (419)
+..-+||+|=|..|++||.+.|- -=+.|-+.++-. |..+|++|-++||....
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence 45689999999999999999992 356777876654 99999999999987644
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=71.37 E-value=5.5 Score=29.19 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=35.7
Q ss_pred cccCHHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCccHHHHHHhhhhhh
Q 014753 250 MRWTTTLHARFVHAVELLG-GHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (419)
Q Consensus 250 lrWT~ELH~rFV~AVeqLG-G~dkAtPK~ILelMnV~gLTr~hVkSHLQKYR 300 (419)
-.||+|=.+++++||++.| +- =+.|-+.|+. +=|..+++.|-++|-
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 3699999999999999999 43 3556666532 678899998887763
No 13
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=66.01 E-value=16 Score=25.57 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=36.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014753 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (419)
Q Consensus 249 RlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKY 299 (419)
|-.||+|=.++++++|+++|. ..=+.|.+.| +|=|-.+|+-+-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 2356777765 588999998887665
No 14
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=65.67 E-value=17 Score=27.31 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=37.0
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhh
Q 014753 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 297 (419)
Q Consensus 247 KpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQ 297 (419)
+.|-.||+|=-++.+++|++.|. -.=+.|.+.+.+.|=|-.+++-.-.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~ 56 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRWR 56 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHHH
Confidence 34567999999999999999992 1246788888878888888875443
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=64.03 E-value=25 Score=25.36 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=38.5
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014753 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (419)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKY 299 (419)
....|-.||+|=.++++++|+++|. -.=+.|.+.| +|=|-.+|+.+-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3456678999999999999999992 1235666665 688999998887766
No 16
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=60.97 E-value=18 Score=28.70 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=39.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cCCCCccHHHHHHhhhhhhccccC
Q 014753 251 RWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQMYRTVKTT 305 (419)
Q Consensus 251 rWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~gLTr~hVkSHLQKYRl~k~t 305 (419)
.||.+=..+|.+|+..++ +.+|.+-..+ .-|+|=|.++|..|-+.....+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s 62 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGS 62 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcccc
Confidence 599999999999999987 4477765442 346889999999887666444443
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=54.86 E-value=35 Score=23.93 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=35.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014753 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (419)
Q Consensus 249 RlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKY 299 (419)
|-.||+|=.++++++|++.|. ..=+.|.+.| +|=|..+|+.+-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 1235566665 688899998887766
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=52.90 E-value=47 Score=23.45 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=36.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014753 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (419)
Q Consensus 249 RlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKY 299 (419)
|-.||+|=.+..+++|+..|. -.=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 134678888865577888888665544
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.41 E-value=61 Score=24.06 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=38.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014753 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (419)
Q Consensus 247 KpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKY 299 (419)
..|-.||+|=-++++++|.++|- ..=+.|-+.|+ +=|..+|+-+-..|
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34568999999999999999991 23467777775 88999999887776
No 20
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.49 E-value=18 Score=26.77 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=34.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHh
Q 014753 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 295 (419)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSH 295 (419)
.|+..-.||+|=|+.|++|+.+.|- -=..|-++ |++=|..+|.-|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHH
Confidence 4456678999999999999999982 23566555 468888888754
No 21
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=43.18 E-value=58 Score=27.16 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=39.3
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCccHHHHHHhhh
Q 014753 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMD--VKDLTLAHVKSHLQ 297 (419)
Q Consensus 243 rs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMn--V~gLTr~hVkSHLQ 297 (419)
...++.|-.||+|=-+..+++|+++|. -.=+.|++.+. .++=|--+||-+-.
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrWr 60 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKWK 60 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHHH
Confidence 347788999999999999999999993 12357777652 37889999986433
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=39.82 E-value=35 Score=27.76 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=37.4
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChH---HHHhhcCCCCccHHHHHHhhhhhhc
Q 014753 250 MRWTTTLHARFVHAVELLGGHERATPK---SVLELMDVKDLTLAHVKSHLQMYRT 301 (419)
Q Consensus 250 lrWT~ELH~rFV~AVeqLGG~dkAtPK---~ILelMnV~gLTr~hVkSHLQKYRl 301 (419)
-.||.|=...|++||..+| . -+|. +|-+.| +|=|-++|+.|-+++..
T Consensus 9 ~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYD-K--DTPDRWANVARAV--EGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHHS--TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3699999999999999998 2 2554 454444 79999999999888754
No 23
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.12 E-value=26 Score=26.22 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=34.7
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhccccCc
Q 014753 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTD 306 (419)
Q Consensus 247 KpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKYRl~k~td 306 (419)
..+-.||+|=+++|++|+.+.| -+ =..|.+.| |+.-|..+|.. -|=+.|+++
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~---fYY~wKkt~ 58 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELIT---FYYYWKKTS 58 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHH---HHHHHHCSS
T ss_pred cCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHH---HHhcccCCC
Confidence 3456899999999999999999 22 23444311 56777777754 444444444
No 24
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.90 E-value=74 Score=23.33 Aligned_cols=47 Identities=13% Similarity=0.324 Sum_probs=37.2
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhhc
Q 014753 248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301 (419)
Q Consensus 248 pRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKYRl 301 (419)
.+-.||.|=.++++++|+.+|- .=..|-++| |=|-.+|+-|-+.|-.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhC
Confidence 3457999999999999999983 346676644 5899999999888744
No 25
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=30.23 E-value=1.4e+02 Score=25.46 Aligned_cols=54 Identities=26% Similarity=0.236 Sum_probs=40.6
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhc--CCCCccHHHHHHhhhhhhcc
Q 014753 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELM--DVKDLTLAHVKSHLQMYRTV 302 (419)
Q Consensus 243 rs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelM--nV~gLTr~hVkSHLQKYRl~ 302 (419)
...++.|-.||+|=-+..+++|+++|. -.=+.|++.+ ..++=|--++|- |||..
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKd---RWrnl 80 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKD---KWKTL 80 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHH---HHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHH---HHHHH
Confidence 457788899999999999999999992 1235677654 347888888884 45543
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=28.29 E-value=1.3e+02 Score=23.57 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=36.2
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014753 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (419)
Q Consensus 249 RlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKY 299 (419)
+-.||+|=-++++++|+..|. -.=+.|-+.| +|=|..+|+.+-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 457999999999999999993 1235677766 688999998777665
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=26.94 E-value=1.4e+02 Score=24.39 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=38.7
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhh
Q 014753 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (419)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKYR 300 (419)
....|-.||+|=-++.+++|++.|. .=+.|.+.| +|=|..+|..+-..|-
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence 3456678999999999999999993 456777765 4778888887766653
No 28
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=25.19 E-value=62 Score=24.72 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=33.8
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhh
Q 014753 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 296 (419)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHL 296 (419)
.|+..-.||+|=+..|.+|+...| -+ =..|-+. -|+.-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHH-HcCCCCHHHHHHHH
Confidence 455667899999999999999999 22 2344431 16778888877654
No 29
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=24.01 E-value=21 Score=28.75 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=34.6
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cCCCCccHHHHHHhhh
Q 014753 250 MRWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQ 297 (419)
Q Consensus 250 lrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~gLTr~hVkSHLQ 297 (419)
-.||.+=...|..|+...+ +-+|.+--.+ --|+|=|.+.|+.|-|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3699999999999998875 4567655443 2357999999999866
No 30
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=22.78 E-value=1.5e+02 Score=25.25 Aligned_cols=54 Identities=22% Similarity=0.159 Sum_probs=41.0
Q ss_pred cCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCccHHHHHHhhhh
Q 014753 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMD--VKDLTLAHVKSHLQM 298 (419)
Q Consensus 242 krs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMn--V~gLTr~hVkSHLQK 298 (419)
+.+.++.|-.||+|=-+..+++|+++|. -.=+.|++.+. .+|=|--+||-+...
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrn 65 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKT 65 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHH
Confidence 3457888999999999999999999992 12357777764 378888888865433
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=22.73 E-value=1.8e+02 Score=23.07 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=34.3
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014753 250 MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (419)
Q Consensus 250 lrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKY 299 (419)
-.||+|=-++++++|+..|. -.=+.|-+.|+ |=|..+|.-+-.+|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI--TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT--TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC--CCCHHHHHHHHHHH
Confidence 47999999999999999993 23456777764 77888887655544
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=21.73 E-value=1.7e+02 Score=22.79 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=42.1
Q ss_pred cchhcccccCcccCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014753 230 LMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (419)
Q Consensus 230 ~~rs~~~~~~p~krs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKY 299 (419)
-.|.||...+.. .-.+-.||+|=...+++||.++|. .=..|-+. ++|=|..+|+.+-..+
T Consensus 41 qcr~Rw~~~l~p----~~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 41 QCRERWHNHLNP----EVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp HHHHHHHHTTCC----CCCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTT--CTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCC----cccccCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 356666543321 123457999999999999999993 23456665 4899999999886544
No 33
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.56 E-value=1.1e+02 Score=23.32 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhh
Q 014753 252 WTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (419)
Q Consensus 252 WT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKY 299 (419)
=++++..+-++++...|--+..+.+.|.+.++|+ +..|..||.+-
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs---~~tV~~~L~~L 55 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTP---KKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCC---HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcC---HHHHHHHHHHH
Confidence 3677888899999999944678999999999854 56677776655
No 34
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=20.65 E-value=1.7e+02 Score=23.23 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=42.9
Q ss_pred cchhcccccCcccCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHhhhhhh
Q 014753 230 LMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (419)
Q Consensus 230 ~~rs~~~~~~p~krs~kKpRlrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~gLTr~hVkSHLQKYR 300 (419)
-.|.|+...+-. .-.+-.||+|=...++++|.++|. .=..|-+.| +|=|..+|+.+-..+.
T Consensus 38 qcr~Rw~~~L~p----~i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 38 QCRERWNNYINP----ALRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIA 98 (107)
T ss_dssp HHHHHHHHHSSS----CCTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc----cccccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 356666543221 123457999999999999999993 235666665 7999999998876554
No 35
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=20.33 E-value=46 Score=26.66 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCc
Q 014753 254 TTLHARFVHAVELLGGHERATP----KSVLELMDVKDL 287 (419)
Q Consensus 254 ~ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~gL 287 (419)
-+|++.|.. |..+||.++.+- +.|.+.|+++.-
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~ 80 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSS 80 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCC
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCC
Confidence 378888876 678999887654 367889999763
Done!