BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014754
         (419 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MTJ|A Chain A, The Crystal Structure Of A Homoserine Dehydrogenase From
           Thiobacillus Denitrificans To 2.15a
          Length = 444

 Score = 34.3 bits (77), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 48  ITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSV---SFYFNQLSTRP- 103
           + KGD     ++        P +S+++       RL    P   V   +F  +QL+  P 
Sbjct: 291 LVKGDAVGPTLYYGAGAGSEPTASAVVADLVDVTRLHTADPHHRVPHLAFQPDQLADTPI 350

Query: 104 ----TCSPVYLLKLFCLDRKGLLHDVTQVLCELELSI 136
                    Y L+L   DR G+L D+T++L +  +SI
Sbjct: 351 LPXEAVRTAYYLRLRAFDRPGVLADITRILADSSISI 387


>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
           Complex With Nadp
 pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
           Complex With Nadp
 pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
           Complex With Nadp
 pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
           Complex With Nadp
          Length = 279

 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 194 ECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKK----ANVVVDNSLSPAH 249
           E   H   T +SP V E  F F+L DK+    A + +  K  K    A  V+    +PAH
Sbjct: 207 EAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAH 266


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,245,580
Number of Sequences: 62578
Number of extensions: 497259
Number of successful extensions: 1273
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 5
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)