BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014754
(419 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 39/221 (17%)
Query: 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKR 167
V L + C D GL + L SI ++ T DG LD F++ D
Sbjct: 755 VTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDG--------- 805
Query: 168 QDETC--EQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQ 225
E C E+ H LG E L+G D +G+ S + + R
Sbjct: 806 --EGCSFEEPHQ-LGRLNHLVEQALSG-RLDIRKGIEDAS---------HHSTSRRMRAI 852
Query: 226 ALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPN 285
+ P VV+DN+ S HT+++++ D GLL+D+ L +++IS +
Sbjct: 853 HVPP--------RVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHIT-- 902
Query: 286 SQGYRDLDLF-IQQKDGKKIVDPEKQSAICSRLKMEMLHPL 325
+ G R +D+F ++ G KI DP + +RL+ +L L
Sbjct: 903 TYGMRAVDVFYVRDLLGMKITDPVR----LARLRETLLASL 939
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 59/154 (38%), Gaps = 29/154 (18%)
Query: 250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEK 309
T L + C DH GL I L I R S G ++Q +G +P +
Sbjct: 756 TELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQ 815
Query: 310 --------QSAICSRL----------------KMEMLH-PLRVIIANRGPDTELLVANPV 344
+ A+ RL +M +H P RV+I N D ++
Sbjct: 816 LGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVVIDNTASDRHTVI---- 871
Query: 345 ELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYS 378
E+ G+ RP + +DVT AL + + SA I Y
Sbjct: 872 EVNGRDRPGLLHDVTSALSSASLQISSAHITTYG 905
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 86/203 (42%), Gaps = 32/203 (15%)
Query: 117 DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLH 176
D GL + + ++I K+TT DG LD+F + +T E H
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTV--------------QTLEG-H 779
Query: 177 AVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKK 236
A+ E I+ +LA D G L + + R + TR + P
Sbjct: 780 AIEKEERIA---RLAKTVRDVLTGDLPLEKALRRQPPRLP---ERTRHLTVPP------- 826
Query: 237 ANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF- 295
V+VDN S HT+++I+ D G LY + R L D ++IS R S + G R +D F
Sbjct: 827 -RVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVS--TYGERVVDSFY 883
Query: 296 IQQKDGKKIVDPEKQSAICSRLK 318
++ G KIV K + I L+
Sbjct: 884 VKDVFGMKIVHRAKLAQIREALE 906
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 45/226 (19%)
Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
L +F D LL + +I ++ TT DG+ LD I+ + +DE
Sbjct: 741 LTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGQALDTIAISREYD-------RDE 793
Query: 171 TCEQLHAVLGE---SCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQAL 227
+ A +GE I L+L G T L P V E
Sbjct: 794 DEGRRAARIGEIIEQVIDGRLRLPDVVARRAAGKTRLRPFVVE----------------- 836
Query: 228 SPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ 287
V+V+N S HT++++ +D GLL+ + + N+ I+ + +
Sbjct: 837 ---------PKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGE 887
Query: 288 GYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRG 333
RD+ ++ G +I P +Q+AI K ++H ++AN G
Sbjct: 888 RARDV-FYVTDLLGARITAPTRQAAI----KRALIH----LLANGG 924
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 14/134 (10%)
Query: 80 KNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRV 139
K++ + PS +++ N LS + T ++++ CLDR GLL ++T VL +L L IQ
Sbjct: 817 KSKAFVIPPSVNIT---NSLSNKFT-----VIEVECLDRPGLLSEITAVLSDLSLDIQSA 868
Query: 140 KVTTTPDGRVLDLFFITD--NRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDC 197
++TT + +V+D F++TD +++ KR + T ++ AV+ E EL+ P
Sbjct: 869 RITTFGE-KVIDTFYVTDLVGQKISGDSKRANITA-RMKAVMAEE--EDELRERMPSGII 924
Query: 198 HQGVTSLSPVVAEE 211
T+ +P +E+
Sbjct: 925 APAATARTPPASEK 938
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 238 NVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-I 296
+V + NSLS T++++ C+D GLL +I L D ++ I R + + G + +D F +
Sbjct: 826 SVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARIT--TFGEKVIDTFYV 883
Query: 297 QQKDGKKIVDPEKQSAICSRLKMEM 321
G+KI K++ I +R+K M
Sbjct: 884 TDLVGQKISGDSKRANITARMKAVM 908
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 10/95 (10%)
Query: 88 PSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG 147
PS ++S N LS + T ++++ CLDR GLL D+T V+ +L L I ++TT +
Sbjct: 827 PSVTIS---NGLSNKFT-----VIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGE- 877
Query: 148 RVLDLFFITD-NRELLHTKKRQDETCEQLHAVLGE 181
+V+D F++TD + + RQ ++L AV+ E
Sbjct: 878 KVIDTFYVTDLFGQKVTNDNRQASIAQRLKAVMSE 912
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 238 NVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ 297
+V + N LS T++++ C+D GLL D+ + D ++ I R + + D ++
Sbjct: 828 SVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDT-FYVT 886
Query: 298 QKDGKKIVDPEKQSAICSRLKMEM 321
G+K+ + +Q++I RLK M
Sbjct: 887 DLFGQKVTNDNRQASIAQRLKAVM 910
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 33/183 (18%)
Query: 140 KVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQ 199
++ TT DGR LD I + + R+ T ++ E LAG +
Sbjct: 759 QIFTTSDGRALDTILINREFPIDEDEMRRANTISKM----------IEDVLAGKK----- 803
Query: 200 GVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDH 259
L V+A TR + + T K +V + NSLS T+++I C+D
Sbjct: 804 ---RLPEVIA------------TRTKGRKRNKTFTVKPHVTISNSLSNKFTVIEIECLDR 848
Query: 260 KGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQQKDGKKIVDPEKQSAICSRLK 318
GLL ++ L D ++ I R + + G + +D F + G+KI + +Q +I RLK
Sbjct: 849 IGLLAEVTAVLADLSLDIHSARIT--TFGEKVIDTFYVIDLVGQKITNENRQGSISVRLK 906
Query: 319 MEM 321
M
Sbjct: 907 AVM 909
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 80 KNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRV 139
+N+ P ++S N LS + T ++++ CLDR GLL +VT VL +L L I
Sbjct: 818 RNKTFTVKPHVTIS---NSLSNKFT-----VIEIECLDRIGLLAEVTAVLADLSLDIHSA 869
Query: 140 KVTTTPDGRVLDLFFITD-NRELLHTKKRQDETCEQLHAVLGE 181
++TT + +V+D F++ D + + + RQ +L AV+ E
Sbjct: 870 RITTFGE-KVIDTFYVIDLVGQKITNENRQGSISVRLKAVMSE 911
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 32/211 (15%)
Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
L +F D LL + +I ++ TT DGR LD I+ + +DE
Sbjct: 741 LTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTISISREYD-------RDE 793
Query: 171 TCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPD 230
+ +GE D +G L VVA R + R + P+
Sbjct: 794 DEGRRATRIGEMI-----------EDVLEGKLRLPEVVARRTVR-----SKARPFVIEPE 837
Query: 231 MTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYR 290
+T ++N S +T++++ +D GLLY++ + N+ I+ + + R
Sbjct: 838 VT--------INNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR 889
Query: 291 DLDLFIQQKDGKKIVDPEKQSAICSRLKMEM 321
D+ ++ G +I P +QSAI S L M
Sbjct: 890 DV-FYVTDLLGAQINAPTRQSAIKSALTHVM 919
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 239 VVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQ 297
V++DN+ S HT+++++ D GLLYD+ R L + ++IS + S + G + +D+F ++
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS--TYGEKAIDVFYVK 904
Query: 298 QKDGKKIVDPEKQSAICSRLKMEMLHP 324
G K+ K + I RL + P
Sbjct: 905 DVFGLKVTHENKLAQIRERLLHALADP 931
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 117 DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
DR GLL+D+T+ L L L I K++T + + +D+F++ D
Sbjct: 866 DRPGLLYDLTRALTNLTLQISSAKISTYGE-KAIDVFYVKD 905
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 324 PLRVIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYS 378
P RV+I N T ++ E+ G+ RP + YD+T AL L + + SA I Y
Sbjct: 844 PPRVLIDNNASTTHTVI----EVNGRDRPGLLYDLTRALTNLTLQISSAKISTYG 894
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 31/207 (14%)
Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
L +F +D LL + +I ++ TT DGR LD I+ E +DE
Sbjct: 741 LTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISREYE-------RDE 793
Query: 171 TCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPD 230
+ +GE+ +G L VA R K+ + ++ P+
Sbjct: 794 DEGRRATRIGETI-----------EQVLEGKLRLPDAVARRTTR----GKQHKAFSVEPE 838
Query: 231 MTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYR 290
V ++N S +T++++ +D GLLY++ + N+ I+ + + R
Sbjct: 839 --------VSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR 890
Query: 291 DLDLFIQQKDGKKIVDPEKQSAICSRL 317
D+ ++ G +I P +Q+AI S L
Sbjct: 891 DV-FYVTDLLGAQINAPTRQAAIKSAL 916
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 88 PSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG 147
P S++ +++L T ++++ LDR GLL+++T + +L L+I V T +
Sbjct: 837 PEVSINNQWSELYT--------VIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGE- 887
Query: 148 RVLDLFFITD 157
R D+F++TD
Sbjct: 888 RARDVFYVTD 897
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 31/207 (14%)
Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
L +F +D LL + +I ++ TT DGR LD I+ E +DE
Sbjct: 741 LTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISREYE-------RDE 793
Query: 171 TCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPD 230
+ +GE+ +G L VA R K+ + ++ P+
Sbjct: 794 DEGRRATRIGETI-----------EQVLEGKLRLPDAVARRTTR----GKQHKAFSVEPE 838
Query: 231 MTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYR 290
V ++N S +T++++ +D GLLY++ + N+ I+ + + R
Sbjct: 839 --------VSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR 890
Query: 291 DLDLFIQQKDGKKIVDPEKQSAICSRL 317
D+ ++ G +I P +Q+AI S L
Sbjct: 891 DV-FYVTDLLGAQINAPTRQAAIKSAL 916
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 88 PSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG 147
P S++ +++L T ++++ LDR GLL+++T + +L L+I V T +
Sbjct: 837 PEVSINNQWSELYT--------VIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGE- 887
Query: 148 RVLDLFFITD 157
R D+F++TD
Sbjct: 888 RARDVFYVTD 897
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNR-ELLHTKKRQD 169
++LF LD+ GLL DV+ V EL LSIQ K+TT + + D F +T+ + E L ++RQ
Sbjct: 807 MELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGE-KAQDFFILTNAKGEALSERERQS 865
Query: 170 ETCEQLHAVL 179
E+L A L
Sbjct: 866 -LSEKLQARL 874
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 46/204 (22%)
Query: 113 LFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD-NRELLHTKKRQDET 171
++C DR L V + +LSI ++ T+ DG D F +T+ + LL +R+
Sbjct: 703 IYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAFDSFIVTELDGSLLKFDRRR--- 759
Query: 172 CEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDM 231
VL ++ I+ SL+ S++ T+LQ +
Sbjct: 760 ------VLEKAIIN-----------------SLN------------SNELTKLQG--SEN 782
Query: 232 TKLKKANVVVD----NSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ 287
KL+ NV + N+ HT +++ +D GLL D+ + N+ I + + +
Sbjct: 783 HKLQHFNVKTEVRFLNTEKTTHTEMELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGE 842
Query: 288 GYRDLDLFIQQKDGKKIVDPEKQS 311
+D + K G+ + + E+QS
Sbjct: 843 KAQDFFILTNAK-GEALSERERQS 865
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 9/78 (11%)
Query: 80 KNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRV 139
KN+ + PS ++ N LS + T ++++ CLDR GLL ++T VL +L L IQ
Sbjct: 818 KNKAFVIPPSVIIT---NSLSNKFT-----VIEVECLDRPGLLSEITAVLSDLSLDIQSA 869
Query: 140 KVTTTPDGRVLDLFFITD 157
++TT + +V+D F++ D
Sbjct: 870 RITTFGE-KVIDTFYVAD 886
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 238 NVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-I 296
+V++ NSLS T++++ C+D GLL +I L D ++ I R + + G + +D F +
Sbjct: 827 SVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARIT--TFGEKVIDTFYV 884
Query: 297 QQKDGKKIVDPEKQSAICSRLKMEM 321
G+KI + +++ I +RLK M
Sbjct: 885 ADLVGQKISNENRRAYITARLKAVM 909
>sp|Q4ZWT0|GLND_PSEU2 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=glnD PE=3 SV=1
Length = 898
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
PV +L+L DR GLL + ++ E +LS+Q K+ T + RV D+FFITD
Sbjct: 812 PVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE-RVEDVFFITD 861
>sp|Q48F57|GLND_PSE14 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=glnD PE=3 SV=1
Length = 898
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
PV +L+L DR GLL + ++ E +LS+Q K+ T + RV D+FFITD
Sbjct: 812 PVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE-RVEDVFFITD 861
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 44/214 (20%)
Query: 102 RPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNREL 161
RP + ++ + DR+GL D+ + L ++ +V T+ G+ LD+F++
Sbjct: 730 RPGSNAAEVV-IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYV------ 782
Query: 162 LHTKKRQDET-----CEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFE 216
QD T CE A+ ++ L+ AG + D ++ P E
Sbjct: 783 ------QDVTGAPFGCENPRAL---RRLADALEAAG-KGDA----LAVEPRRGSE----- 823
Query: 217 LSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMK 276
+TR A + +V +DN S T+++ D GLL+ + +TL D +
Sbjct: 824 ----QTRAAAFAI------APSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALS 873
Query: 277 ISYGRFSPNSQGYRDLDLF-IQQKDGKKIVDPEK 309
I + G R +D F +Q +G K+ D K
Sbjct: 874 IQSAHI--DGYGERAVDAFYVQTTEGGKVTDTRK 905
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 44/214 (20%)
Query: 102 RPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNREL 161
RP + ++ + DR+GL D+ + L ++ +V T+ G+ LD+F++
Sbjct: 730 RPGSNAAEVV-IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYV------ 782
Query: 162 LHTKKRQDET-----CEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFE 216
QD T CE A+ ++ L+ AG + D ++ P E
Sbjct: 783 ------QDVTGAPFGCENPRAL---RRLADALEAAG-KGDA----LAVEPRRGSE----- 823
Query: 217 LSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMK 276
+TR A + +V +DN S T+++ D GLL+ + +TL D +
Sbjct: 824 ----QTRAAAFAI------APSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALS 873
Query: 277 ISYGRFSPNSQGYRDLDLF-IQQKDGKKIVDPEK 309
I + G R +D F +Q +G K+ D K
Sbjct: 874 IQSAHI--DGYGERAVDAFYVQTTEGGKVTDTRK 905
>sp|Q886P5|GLND_PSESM [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=glnD PE=3 SV=1
Length = 898
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
PV +L+L DR GLL + ++ E +LS+Q K+ T + RV D+FFITD
Sbjct: 812 PVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE-RVEDVFFITD 861
>sp|Q4KHH8|GLND_PSEF5 [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=glnD PE=3 SV=1
Length = 900
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD--NRELLHT 164
PV +L+L DR GLL + ++ E +LS+Q K+ T + RV D+FFITD N+ L
Sbjct: 813 PVTVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE-RVEDVFFITDAHNQPLSDP 871
Query: 165 K---KRQDETCEQL 175
+ + QD EQL
Sbjct: 872 QLCSRLQDAIVEQL 885
>sp|Q3KHB4|GLND_PSEPF [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf0-1) GN=glnD PE=3 SV=1
Length = 900
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD--NREL--- 161
PV +L+L DR GLL V + E +LS+Q K+ T + RV D+FFITD N+ L
Sbjct: 813 PVTVLELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGE-RVEDVFFITDAHNQPLSDP 871
Query: 162 LHTKKRQDETCEQL 175
L + QD EQL
Sbjct: 872 LLCSRLQDAIVEQL 885
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 139 VKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCH 198
++ TT DGR LD + NRE +DET + A +G+ D
Sbjct: 763 AQIHTTSDGRALDTILV--NREF---SVAEDET--RRAASIGKLI-----------EDVL 804
Query: 199 QGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVD 258
G L V+A S K +R ++P++T + N+LS T++++ +D
Sbjct: 805 SGRKKLPDVIASRT----RSKKRSRAFTVTPEVT--------ISNALSNKFTVIEVEGLD 852
Query: 259 HKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQQKDGKKIVDPEKQSAICSRL 317
GLL ++ L D ++ I+ + + G + +D F + G KI +Q I +RL
Sbjct: 853 RTGLLSEVTAVLSDLSLDIASAHIT--TFGEKVIDTFYVTDLVGSKITSENRQMNIAARL 910
Query: 318 K 318
K
Sbjct: 911 K 911
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 80 KNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRV 139
++R P ++S N LS + T ++++ LDR GLL +VT VL +L L I
Sbjct: 823 RSRAFTVTPEVTIS---NALSNKFT-----VIEVEGLDRTGLLSEVTAVLSDLSLDIASA 874
Query: 140 KVTTTPDGRVLDLFFITD-NRELLHTKKRQDETCEQLHAVLG 180
+TT + +V+D F++TD + ++ RQ +L AVL
Sbjct: 875 HITTFGE-KVIDTFYVTDLVGSKITSENRQMNIAARLKAVLA 915
>sp|P36223|GLND_AZOVI [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii GN=glnD
PE=3 SV=1
Length = 899
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKK 166
PV +L++ DR GLL + ++ + +LS+Q K+ T + RV D+FF+TD H +
Sbjct: 813 PVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGE-RVEDVFFVTDA----HNQP 867
Query: 167 RQD-ETCEQLHAVLGESC 183
D E C +L + E
Sbjct: 868 LSDPELCARLQLAIAEQL 885
>sp|C1DSU8|GLND_AZOVD [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=glnD PE=3 SV=1
Length = 899
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKK 166
PV +L++ DR GLL + ++ + +LS+Q K+ T + RV D+FF+TD H +
Sbjct: 813 PVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGE-RVEDVFFVTDA----HNQP 867
Query: 167 RQD-ETCEQLHAVLGESC 183
D E C +L + E
Sbjct: 868 LSDPELCARLQLAIAEQL 885
>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain
ymp) GN=glnD PE=3 SV=1
Length = 899
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
PV +L+L DR GLL + ++ E +LS+Q K+ T + RV D+FF+TD
Sbjct: 813 PVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGE-RVEDVFFVTD 862
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 29/203 (14%)
Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
L + +D LL + +I ++ TT DGR LD I+ + +DE
Sbjct: 737 LTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRALDTISISREYD-------RDE 789
Query: 171 TCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPD 230
+ +GE+ + +G L VA R S + +L+A
Sbjct: 790 DEGRRATRIGETI-----------EEVLEGKLRLPEAVA----RRASSGSKAKLRAF--- 831
Query: 231 MTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYR 290
+ + V ++N+ S +T++++ +D GLLY + + N+ I+ + + R
Sbjct: 832 ---VVEPEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERAR 888
Query: 291 DLDLFIQQKDGKKIVDPEKQSAI 313
D+ ++ G +I P +Q+AI
Sbjct: 889 DV-FYVTDLLGAQITAPTRQAAI 910
>sp|C3K5E4|GLND_PSEFS [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=glnD PE=3 SV=1
Length = 900
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
PV +L+L DR GLL + + E +LS+Q K+ T + RV D+FFITD
Sbjct: 813 PVTVLELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGE-RVEDVFFITD 862
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 80 KNRLMLECPSCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRV 139
++R P ++S N LS + T ++++ LDR GLL +VT VL +L L I
Sbjct: 823 RSRAFTVTPEVTIS---NTLSNKFT-----VIEVEGLDRTGLLSEVTAVLSDLSLDIASA 874
Query: 140 KVTTTPDGRVLDLFFITD-NRELLHTKKRQDETCEQLHAVLG 180
+TT + +V+D F++TD + ++ RQ +L AVL
Sbjct: 875 HITTFGE-KVIDTFYVTDLVGSKITSENRQMNIAARLKAVLA 915
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 33/181 (18%)
Query: 139 VKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCELQLAGPECDCH 198
++ TT DGR LD + NRE +DET + A +G+ D
Sbjct: 763 AQIHTTSDGRALDTILV--NREF---SVAEDET--RRAASIGKLI-----------EDVL 804
Query: 199 QGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVD 258
G L V+A K +R ++P++T + N+LS T++++ +D
Sbjct: 805 SGRKRLPEVIASRT----RVKKRSRAFTVTPEVT--------ISNTLSNKFTVIEVEGLD 852
Query: 259 HKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQQKDGKKIVDPEKQSAICSRL 317
GLL ++ L D ++ I+ + + G + +D F + G KI +Q I +RL
Sbjct: 853 RTGLLSEVTAVLSDLSLDIASAHIT--TFGEKVIDTFYVTDLVGSKITSENRQMNIAARL 910
Query: 318 K 318
K
Sbjct: 911 K 911
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 104 TCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
T P +L++ DR GLL V Q+ + +LS+Q K+ T + RV D+FF+TD
Sbjct: 810 TQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGE-RVEDVFFVTD 862
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFIT--DNRELLHT 164
PV +L++ DR GLL + ++ E +LS+Q K+ T + RV D+FFIT DN+ L
Sbjct: 813 PVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGE-RVEDVFFITDADNQPLSDP 871
Query: 165 K---KRQDETCEQLHAVLG 180
+ + Q+ +QL A G
Sbjct: 872 QLCSRLQEAIVQQLQAGQG 890
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
PV +L++ DR GLL + ++ E +LS+Q K+ T + RV D+FFITD
Sbjct: 813 PVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGE-RVEDVFFITD 862
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
PV +L++ DR GLL + ++ E +LS+Q K+ T + RV D+FFITD
Sbjct: 813 PVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGE-RVEDVFFITD 862
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
PV +L++ DR GLL + ++ E ++S+Q K+ T + RV D+FFITD
Sbjct: 813 PVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGE-RVEDVFFITD 862
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/267 (19%), Positives = 102/267 (38%), Gaps = 51/267 (19%)
Query: 76 WTNLKNRLMLECPSCSVSFYFNQLSTRPTCS-PVYLLK--------------LFCLDRKG 120
W+ L + L+ + V+++ + + +P S P+ L+K ++ D+
Sbjct: 657 WSQLGDDYFLKHNAADVAWHSDAILQQPADSGPLVLIKETTQREFEGGTQIFIYAPDQHD 716
Query: 121 LLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180
+ +L L+I ++ T+ LD + + DN + + +Q+ L
Sbjct: 717 FFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDG--GSIGDNPQRVKQIRDGLT 774
Query: 181 ESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVV 240
E+ + E A + V +L F+ P +T L A
Sbjct: 775 EALRTPEDYPA-----------IIQRRVPRQLKHFDFP----------PQVTILNDAQRP 813
Query: 241 VDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKD 300
V T+L+I D GLL I R + ++ + + + + D+ FI D
Sbjct: 814 V--------TILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDV-FFITDAD 864
Query: 301 GKKIVDPEKQSAICSRLKMEMLHPLRV 327
+ + DP+ +CSRL+ ++ L+
Sbjct: 865 NQPLSDPQ----LCSRLQEAIIQQLQA 887
>sp|Q9CNH1|GLND_PASMU [Protein-PII] uridylyltransferase OS=Pasteurella multocida (strain
Pm70) GN=glnD PE=3 SV=1
Length = 864
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDE 170
++LF LD+ GLL V+QV EL+L++ K+TT + + D F +T++ + T +++
Sbjct: 794 MELFALDQTGLLAKVSQVFSELKLNLLNAKITTIGE-KAEDFFILTNSEDRALTAEQRQC 852
Query: 171 TCEQLHAVL 179
++LH VL
Sbjct: 853 LTQRLHEVL 861
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 113 LFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
++C D+ L H V + + SI ++ T+ DG V D F IT+
Sbjct: 690 VYCQDQPNLFHKVVTTIGAKKFSIHDAQIITSHDGYVFDSFIITE 734
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 117 DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLH 176
DR L D+ + + ++ +V T+ G+ LD+F++ QD + +
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYV------------QDASGQPFG 788
Query: 177 AVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKK 236
+ + LA C + P ++L R T A++P
Sbjct: 789 SHDPRALARLAETLA---CAARGEPVAREPRKPQDLGR-------TAAFAITP------- 831
Query: 237 ANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGY--RDLDL 294
V++DN S T+++ D GLL + RT+ D + I S + GY R +D
Sbjct: 832 -AVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSI----LSAHIDGYGERAVDA 886
Query: 295 F-IQQKDGKKIVDPEKQS 311
F + DG+K+ D K++
Sbjct: 887 FYVVDADGRKLTDARKRN 904
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 239 VVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQ 298
V ++N S HT++++ +D GLL+ + + N+ I+ + + RD+ ++
Sbjct: 837 VTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDV-FYVTD 895
Query: 299 KDGKKIVDPEKQSAI 313
G +I P +Q+AI
Sbjct: 896 LLGARITAPTRQAAI 910
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 97 NQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFIT 156
NQ S R T ++++ LDR GLL +T + +L L+I V T + R D+F++T
Sbjct: 841 NQWSDRHT-----MIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGE-RARDVFYVT 894
Query: 157 D 157
D
Sbjct: 895 D 895
>sp|Q7N8P9|GLND_PHOLL [Protein-PII] uridylyltransferase OS=Photorhabdus luminescens
subsp. laumondii (strain TT01) GN=glnD PE=3 SV=1
Length = 882
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 95 YFNQLSTRPTCSPVY-----LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRV 149
+FN + T+ T P + ++LF LD+ GLL V + E+ +S+ +TT + RV
Sbjct: 789 HFN-VPTKVTFLPTHNERRTYMELFALDQPGLLARVGNIFAEMGVSLHGAHITTIGE-RV 846
Query: 150 LDLFFITDNRELLHTKKRQDETCEQLHAVLG 180
D F + D KK ++E E+L A L
Sbjct: 847 EDFFVLADKDHKALNKKVREELSERLTATLN 877
>sp|A8GIE8|GLND_SERP5 [Protein-PII] uridylyltransferase OS=Serratia proteamaculans
(strain 568) GN=glnD PE=3 SV=1
Length = 892
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 232 TKLKKANVVVDNSLSPAHT----LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ 287
+KL+ +V + S P HT L++ +D GLL + D N+ + R S +
Sbjct: 795 SKLRHFSVPTEVSFLPTHTDRRSYLELTALDQPGLLARVGEVFADLNLSLHGARIS--TI 852
Query: 288 GYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHP 324
G R DLFI ++ ++PE + + RL E L+P
Sbjct: 853 GERVEDLFILADSDRRALNPETRRKLEQRLT-EALNP 888
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD-NRELLHTKKRQ 168
L+L LD+ GLL V +V +L LS+ +++T + RV DLF + D +R L+ + R+
Sbjct: 819 LELTALDQPGLLARVGEVFADLNLSLHGARISTIGE-RVEDLFILADSDRRALNPETRR 876
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157
V +L++ DR GLL + ++ E +LS+Q K+ T + RV D+FFITD
Sbjct: 814 VTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGE-RVEDVFFITD 862
Score = 38.9 bits (89), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 54/271 (19%), Positives = 100/271 (36%), Gaps = 59/271 (21%)
Query: 76 WTNLKNRLMLECPSCSVSFYFNQLSTRPT-CSPVYLLK--------------LFCLDRKG 120
W+ L + L+ + V+++ + + +P P+ L+K ++ D+
Sbjct: 657 WSQLGDDYFLKHNAADVAWHSDAILQQPADGGPLVLIKETTQREFEGGTQIFIYAPDQHD 716
Query: 121 LLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180
+ +L L+I ++ T+ LD + + DN
Sbjct: 717 FFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDND--------------------- 755
Query: 181 ESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKAN-- 238
G D Q V + + E L E D T +Q P +LK N
Sbjct: 756 ----------GGSIGDNPQRVKQIRDGLTEALRNPE--DYPTIIQRRVP--RQLKHFNFP 801
Query: 239 --VVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFI 296
V + N A T+L+I D GLL I R + ++ + + + + D+ FI
Sbjct: 802 PQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDV-FFI 860
Query: 297 QQKDGKKIVDPEKQSAICSRLKMEMLHPLRV 327
D + + DP+ +CSRL+ ++ L+
Sbjct: 861 TDADNQPLSDPQ----LCSRLQEAIVQQLQA 887
>sp|Q02RD0|GLND_PSEAB [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=glnD PE=3 SV=1
Length = 900
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKR 167
V +L++ DR GLL + + + +LS+Q K+ T + RV D+F+ITD R +
Sbjct: 814 VSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE-RVEDVFYITDAR---NQPLA 869
Query: 168 QDETCEQLHAVLGES 182
+ C++L A L E
Sbjct: 870 DPDLCKRLQAALVEQ 884
>sp|B7V7F5|GLND_PSEA8 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
LESB58) GN=glnD PE=3 SV=1
Length = 900
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKR 167
V +L++ DR GLL + + + +LS+Q K+ T + RV D+F+ITD R +
Sbjct: 814 VSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE-RVEDVFYITDAR---NQPLA 869
Query: 168 QDETCEQLHAVLGES 182
+ C++L A L E
Sbjct: 870 DPDLCKRLQAALVEQ 884
>sp|A6V1D0|GLND_PSEA7 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
PA7) GN=glnD PE=3 SV=1
Length = 900
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKR 167
V +L++ DR GLL + + + +LS+Q K+ T + RV D+F+ITD R +
Sbjct: 814 VSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE-RVEDVFYITDAR---NQPLA 869
Query: 168 QDETCEQLHAVLGES 182
+ C++L A L E
Sbjct: 870 DPDLCKRLQAALVEQ 884
>sp|Q9Z9H0|GLND_PSEAE [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=glnD
PE=3 SV=2
Length = 900
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKR 167
V +L++ DR GLL + + + +LS+Q K+ T + RV D+F+ITD R +
Sbjct: 814 VSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE-RVEDVFYITDAR---NQPLA 869
Query: 168 QDETCEQLHAVLGES 182
+ C++L A L E
Sbjct: 870 DPDLCKRLQAALVEQ 884
>sp|Q8XZJ3|GLND_RALSO [Protein-PII] uridylyltransferase OS=Ralstonia solanacearum (strain
GMI1000) GN=glnD PE=3 SV=1
Length = 861
Score = 38.9 bits (89), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 68/179 (37%), Gaps = 34/179 (18%)
Query: 18 GEPHVITVNCPDKTGLGCDICR-------IILDFGLYITKGDISTD-------------- 56
GE + V PD+ L IC ILD ++ TK + D
Sbjct: 676 GEGLQVAVYSPDRPDLFARICGYFERKGLTILDAKIHTTKHGYALDTFQVADPGSGLVEP 735
Query: 57 GIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLSTRPTC-------SPVY 109
G + I+ V + +I + ++ E P +S +P Y
Sbjct: 736 GHYRDIITLVEHELAELI----ARETVLAEPPRGRISRQSRSFPIKPRVDLRPDERGQYY 791
Query: 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQ 168
LL L DR GLL+ + +VL +S+ ++ T + RV D+F + D R L K Q
Sbjct: 792 LLSLSATDRTGLLYAIARVLARHRVSVHTARINTLGE-RVEDVFLL-DGRRLTQDNKLQ 848
>sp|Q4FUP5|GLND_PSYA2 [Protein-PII] uridylyltransferase OS=Psychrobacter arcticus (strain
DSM 17307 / 273-4) GN=glnD PE=3 SV=1
Length = 915
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 90 CSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRV 149
+++F FN S++ +++ L LD+ GLL V QV + ++ + ++TT + R
Sbjct: 826 TTINFEFNDASSQ------HIMSLETLDQPGLLARVGQVFLQQQIEVHAARITTLGE-RA 878
Query: 150 LDLFFITDNRE 160
D+F+I+D +
Sbjct: 879 EDMFYISDQND 889
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 15/101 (14%)
Query: 230 DMTKLKK--------ANVVVDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKIS--- 278
D KLKK ++ DN S +T++++ D GLLYD+ RTL N+ I+
Sbjct: 823 DRDKLKKREAQFRFPTHIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAV 882
Query: 279 ---YGRFSPNSQGYRDL-DLFIQQKDGKKIVDPEKQSAICS 315
YG +S +D+ L + QK+ ++ ++ + + AI
Sbjct: 883 IATYGAQVVDSFYVKDMFGLKLHQKNRQETLEKKLRQAIVE 923
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 106 SPVY-LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNREL-LH 163
S +Y ++++ DR GLL+D+T+ L + I V T +V+D F++ D L LH
Sbjct: 847 SDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASA-VIATYGAQVVDSFYVKDMFGLKLH 905
Query: 164 TKKRQDETCEQLHAVLGESC 183
K RQ+ ++L + E
Sbjct: 906 QKNRQETLEKKLRQAIVEGA 925
>sp|A8ALC3|GLND_CITK8 [Protein-PII] uridylyltransferase OS=Citrobacter koseri (strain
ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=glnD PE=3 SV=1
Length = 890
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI-TDNRELLHTKKRQ 168
L+L LD+ GLL V Q+ +L +S+ ++TT + RV DLF I T +R L+ + +Q
Sbjct: 816 FLELIALDQPGLLARVGQIFADLGISLHGARITTIGE-RVEDLFIIATADRRALNNELQQ 874
Query: 169 DETCEQLHAVLG 180
E ++L A L
Sbjct: 875 -EVHQRLTAALN 885
>sp|P41393|GLND_KLEOX [Protein-PII] uridylyltransferase OS=Klebsiella oxytoca GN=glnD
PE=3 SV=1
Length = 887
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI-TDNRELLHTKKRQ 168
L+L LD+ GLL V QV +L +S+ ++TT + RV DLF I T +R L+ + +Q
Sbjct: 813 FLELIALDQPGLLARVGQVFADLGISLHGARITTIGE-RVEDLFIIATADRRALNNELQQ 871
Query: 169 D 169
+
Sbjct: 872 E 872
>sp|Q1QDM9|GLND_PSYCK [Protein-PII] uridylyltransferase OS=Psychrobacter cryohalolentis
(strain K5) GN=glnD PE=3 SV=1
Length = 913
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 89 SCSVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGR 148
+ +++F FN S + +++ L LD+ GLL V QV + ++ + ++TT + R
Sbjct: 823 ATTINFDFNDASNQ------HIMSLETLDQPGLLARVGQVFLQQQIEVHAARITTLGE-R 875
Query: 149 VLDLFFITDNRE 160
D+F+I+D +
Sbjct: 876 AEDMFYISDQND 887
>sp|Q6D8E5|GLND_ERWCT [Protein-PII] uridylyltransferase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=glnD
PE=3 SV=1
Length = 904
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 220 KETRLQALSPDMTKLKKANVVVDNSLSPAHT----LLQIHCVDHKGLLYDIMRTLKDCNM 275
+ R++ SP KL+ +V + + P HT +++ +D GLL I D N+
Sbjct: 795 QHPRVRRTSP---KLRHFSVPTEVNFLPTHTDRRSYMELSALDQPGLLARIGEIFSDLNL 851
Query: 276 KISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHP 324
+ R S + G R DLFI ++ + PE + + RL E L+P
Sbjct: 852 SLHGARIS--TIGERVEDLFILADSDRRALKPELRLKLQERLT-EALNP 897
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDN 158
++L LD+ GLL + ++ +L LS+ +++T + RV DLF + D+
Sbjct: 828 MELSALDQPGLLARIGEIFSDLNLSLHGARISTIGE-RVEDLFILADS 874
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 97 NQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFIT 156
N LS R + ++++ LDR GLL ++T L +L L I +TT + +V+D F++T
Sbjct: 840 NTLSNRFS-----VIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGE-KVIDTFYVT 893
Query: 157 D 157
D
Sbjct: 894 D 894
Score = 35.4 bits (80), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 241 VDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKD 300
+ N+LS +++++ +D GLL +I TL D ++ I+ + + D ++
Sbjct: 838 IRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDT-FYVTDLT 896
Query: 301 GKKIVDPEKQSAICSRL--KMEMLHPLR 326
G+KI P + + I +RL +E + P R
Sbjct: 897 GQKIDSPARIATIRNRLMATLEGIAPER 924
>sp|C6DAI1|GLND_PECCP [Protein-PII] uridylyltransferase OS=Pectobacterium carotovorum
subsp. carotovorum (strain PC1) GN=glnD PE=3 SV=1
Length = 904
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 233 KLKKANVVVDNSLSPAHT----LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQG 288
KL+ +V + + P HT +++ +D GLL I D N+ + R S + G
Sbjct: 805 KLRHFSVPTEVNFLPTHTDRRSYMELSALDQPGLLARIGEIFADLNLSLHGARIS--TIG 862
Query: 289 YRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHP 324
R DLFI ++ + PE + + RL E L+P
Sbjct: 863 ERVEDLFILADSDRRALKPELRLKLQERLT-EALNP 897
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDN 158
++L LD+ GLL + ++ +L LS+ +++T + RV DLF + D+
Sbjct: 828 MELSALDQPGLLARIGEIFADLNLSLHGARISTIGE-RVEDLFILADS 874
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,331,999
Number of Sequences: 539616
Number of extensions: 6446849
Number of successful extensions: 17151
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 16931
Number of HSP's gapped (non-prelim): 325
length of query: 419
length of database: 191,569,459
effective HSP length: 120
effective length of query: 299
effective length of database: 126,815,539
effective search space: 37917846161
effective search space used: 37917846161
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)