Query 014754
Match_columns 419
No_of_seqs 327 out of 2053
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:11:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 1.3E-28 2.7E-33 270.4 24.5 181 103-321 672-853 (854)
2 PRK05007 PII uridylyl-transfer 100.0 4.8E-28 1E-32 266.7 25.0 184 103-323 696-880 (884)
3 TIGR01693 UTase_glnD [Protein- 99.9 1.7E-25 3.8E-30 246.9 24.5 184 104-321 664-849 (850)
4 PRK00275 glnD PII uridylyl-tra 99.9 3E-25 6.5E-30 244.6 25.7 184 106-324 702-888 (895)
5 PRK04374 PII uridylyl-transfer 99.9 1E-24 2.2E-29 239.0 24.9 180 105-322 687-867 (869)
6 PRK04374 PII uridylyl-transfer 99.9 1.4E-24 3E-29 238.0 24.4 174 5-180 675-867 (869)
7 PRK05007 PII uridylyl-transfer 99.9 1.4E-24 3E-29 239.3 23.6 174 5-181 687-880 (884)
8 PRK01759 glnD PII uridylyl-tra 99.9 1.5E-24 3.2E-29 238.4 23.3 172 5-179 663-853 (854)
9 PRK00275 glnD PII uridylyl-tra 99.9 1.7E-24 3.7E-29 238.6 23.5 175 5-182 687-888 (895)
10 PRK05092 PII uridylyl-transfer 99.9 3.6E-24 7.7E-29 238.0 25.9 187 104-323 728-916 (931)
11 PRK03059 PII uridylyl-transfer 99.9 3.6E-24 7.7E-29 235.2 25.1 181 105-322 675-855 (856)
12 PRK03059 PII uridylyl-transfer 99.9 1.1E-23 2.3E-28 231.4 24.0 171 5-180 664-855 (856)
13 COG2844 GlnD UTP:GlnB (protein 99.9 9.3E-24 2E-28 220.9 21.1 179 107-322 683-862 (867)
14 PRK03381 PII uridylyl-transfer 99.9 1.6E-23 3.5E-28 228.0 23.3 176 106-318 597-773 (774)
15 PRK03381 PII uridylyl-transfer 99.9 1.2E-23 2.7E-28 228.9 22.4 164 7-175 588-772 (774)
16 PRK05092 PII uridylyl-transfer 99.9 1.2E-21 2.6E-26 217.9 24.7 175 6-182 718-917 (931)
17 TIGR01693 UTase_glnD [Protein- 99.9 1E-21 2.2E-26 217.0 23.4 172 5-179 654-849 (850)
18 COG2844 GlnD UTP:GlnB (protein 99.9 2.9E-21 6.2E-26 202.3 20.2 173 5-180 670-862 (867)
19 cd04897 ACT_ACR_3 ACT domain-c 99.8 1.9E-19 4.1E-24 138.5 11.0 73 249-323 1-74 (75)
20 cd04896 ACT_ACR-like_3 ACT dom 99.8 2.9E-18 6.4E-23 131.9 11.1 75 250-324 1-75 (75)
21 PRK11589 gcvR glycine cleavage 99.8 1.6E-17 3.5E-22 151.1 16.8 160 246-416 5-169 (190)
22 cd04895 ACT_ACR_1 ACT domain-c 99.8 6E-18 1.3E-22 129.2 9.8 68 249-318 1-69 (72)
23 PRK11589 gcvR glycine cleavage 99.7 4.5E-16 9.8E-21 141.6 13.4 156 17-180 5-167 (190)
24 cd04897 ACT_ACR_3 ACT domain-c 99.7 4.7E-16 1E-20 119.7 11.2 72 108-180 1-73 (75)
25 cd04895 ACT_ACR_1 ACT domain-c 99.7 9.7E-16 2.1E-20 117.1 10.7 68 108-176 1-69 (72)
26 cd04927 ACT_ACR-like_2 Second 99.7 1.5E-15 3.1E-20 118.4 11.4 72 110-181 2-73 (76)
27 COG2716 GcvR Glycine cleavage 99.6 1.7E-15 3.7E-20 132.0 11.7 143 247-400 3-149 (176)
28 cd04900 ACT_UUR-like_1 ACT dom 99.6 3.3E-15 7.2E-20 115.4 10.9 71 109-179 2-73 (73)
29 COG2716 GcvR Glycine cleavage 99.6 3.5E-15 7.6E-20 130.0 10.8 154 18-179 3-163 (176)
30 cd04896 ACT_ACR-like_3 ACT dom 99.6 6.6E-15 1.4E-19 113.3 10.7 70 109-180 1-73 (75)
31 cd04925 ACT_ACR_2 ACT domain-c 99.6 1.6E-14 3.4E-19 112.0 11.1 71 109-180 1-73 (74)
32 cd04898 ACT_ACR-like_4 ACT dom 99.6 2.7E-15 5.9E-20 112.4 5.4 77 342-419 1-77 (77)
33 cd04928 ACT_TyrKc Uncharacteri 99.5 2.4E-13 5.1E-18 102.6 9.8 64 21-87 2-67 (68)
34 cd04925 ACT_ACR_2 ACT domain-c 99.5 4E-13 8.6E-18 104.1 10.0 71 250-322 1-73 (74)
35 cd04928 ACT_TyrKc Uncharacteri 99.5 6E-13 1.3E-17 100.5 10.2 66 109-179 2-67 (68)
36 cd04927 ACT_ACR-like_2 Second 99.5 7.2E-13 1.6E-17 103.2 10.9 72 251-324 2-74 (76)
37 cd04900 ACT_UUR-like_1 ACT dom 99.4 1.8E-12 3.9E-17 100.1 10.2 70 250-320 2-72 (73)
38 cd04926 ACT_ACR_4 C-terminal 99.3 1.8E-11 3.9E-16 94.2 10.5 67 109-176 2-68 (72)
39 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 7.4E-11 1.6E-15 89.9 10.5 70 109-179 1-70 (70)
40 cd04894 ACT_ACR-like_1 ACT dom 99.2 4.7E-11 1E-15 86.3 7.6 68 21-88 1-69 (69)
41 PRK00227 glnD PII uridylyl-tra 99.2 3.6E-10 7.9E-15 121.2 16.4 145 108-322 546-691 (693)
42 cd04926 ACT_ACR_4 C-terminal 99.1 6.6E-10 1.4E-14 85.5 9.4 54 20-74 1-55 (72)
43 PRK00227 glnD PII uridylyl-tra 99.1 1.4E-09 3E-14 116.8 14.5 142 21-180 547-691 (693)
44 cd04899 ACT_ACR-UUR-like_2 C-t 99.0 3.3E-09 7.3E-14 80.6 10.1 68 250-320 1-69 (70)
45 cd04873 ACT_UUR-ACR-like ACT d 99.0 7E-09 1.5E-13 78.5 10.4 68 110-178 2-69 (70)
46 PF13740 ACT_6: ACT domain; PD 98.7 2.4E-07 5.3E-12 72.0 10.3 66 108-180 2-67 (76)
47 cd04873 ACT_UUR-ACR-like ACT d 98.7 2.7E-07 5.8E-12 69.7 10.0 68 250-320 1-69 (70)
48 PF13740 ACT_6: ACT domain; PD 98.7 1E-07 2.3E-12 74.0 7.8 64 20-86 2-65 (76)
49 cd04893 ACT_GcvR_1 ACT domains 98.6 3.1E-07 6.8E-12 71.5 9.0 63 21-87 2-65 (77)
50 cd04870 ACT_PSP_1 CT domains f 98.4 1.3E-06 2.8E-11 67.6 8.2 63 22-87 1-64 (75)
51 cd04894 ACT_ACR-like_1 ACT dom 98.4 8.4E-07 1.8E-11 64.4 6.4 67 109-178 1-67 (69)
52 PF01842 ACT: ACT domain; Int 98.4 3.6E-06 7.9E-11 62.6 10.4 63 109-178 1-64 (66)
53 cd04893 ACT_GcvR_1 ACT domains 98.4 2.2E-06 4.7E-11 66.8 8.8 64 109-179 2-65 (77)
54 cd04870 ACT_PSP_1 CT domains f 98.4 1.9E-06 4.2E-11 66.6 8.2 65 110-180 1-65 (75)
55 PF01842 ACT: ACT domain; Int 98.3 3.9E-06 8.6E-11 62.4 9.0 62 21-86 1-64 (66)
56 cd04869 ACT_GcvR_2 ACT domains 98.2 1.2E-05 2.7E-10 62.7 9.0 64 22-87 1-70 (81)
57 cd04875 ACT_F4HF-DF N-terminal 98.2 1.5E-05 3.3E-10 61.3 9.2 65 22-87 1-67 (74)
58 cd04872 ACT_1ZPV ACT domain pr 98.1 9.2E-06 2E-10 64.8 7.7 65 21-87 2-67 (88)
59 COG4747 ACT domain-containing 98.1 0.00011 2.3E-09 60.6 13.1 112 22-155 5-116 (142)
60 cd04875 ACT_F4HF-DF N-terminal 98.1 2E-05 4.3E-10 60.6 8.6 33 344-376 2-34 (74)
61 PRK00194 hypothetical protein; 98.1 1.9E-05 4.1E-10 63.2 7.9 67 20-87 3-69 (90)
62 cd04872 ACT_1ZPV ACT domain pr 98.0 1.7E-05 3.6E-10 63.3 7.3 67 109-180 2-68 (88)
63 cd04869 ACT_GcvR_2 ACT domains 97.9 8E-05 1.7E-09 58.1 9.2 65 110-179 1-70 (81)
64 PRK07431 aspartate kinase; Pro 97.9 0.041 8.9E-07 59.2 33.0 268 22-373 272-554 (587)
65 PRK00194 hypothetical protein; 97.9 4.6E-05 9.9E-10 60.9 7.7 67 108-179 3-69 (90)
66 TIGR00655 PurU formyltetrahydr 97.8 0.00033 7.1E-09 68.0 12.9 107 251-367 2-110 (280)
67 PRK06027 purU formyltetrahydro 97.8 0.00034 7.4E-09 68.2 12.8 68 247-320 4-73 (286)
68 PF13291 ACT_4: ACT domain; PD 97.8 0.00018 3.8E-09 56.2 8.8 66 107-177 5-71 (80)
69 PRK06027 purU formyltetrahydro 97.8 0.00057 1.2E-08 66.7 13.9 68 19-88 5-75 (286)
70 COG3830 ACT domain-containing 97.7 5.1E-05 1.1E-09 59.9 5.1 66 20-87 3-69 (90)
71 PRK13010 purU formyltetrahydro 97.7 0.00041 8.9E-09 67.6 12.5 68 19-87 8-78 (289)
72 TIGR00655 PurU formyltetrahydr 97.7 0.00068 1.5E-08 65.8 13.5 114 22-142 2-118 (280)
73 COG4747 ACT domain-containing 97.7 0.0017 3.7E-08 53.7 13.2 113 251-393 5-118 (142)
74 cd04887 ACT_MalLac-Enz ACT_Mal 97.7 0.00051 1.1E-08 52.4 9.5 62 111-177 2-63 (74)
75 PRK13011 formyltetrahydrofolat 97.6 0.0011 2.4E-08 64.6 13.9 114 19-143 6-124 (286)
76 COG3830 ACT domain-containing 97.6 8.1E-05 1.7E-09 58.8 4.7 68 108-180 3-70 (90)
77 PRK13011 formyltetrahydrofolat 97.6 0.00029 6.3E-09 68.7 8.9 71 341-416 7-77 (286)
78 PF13291 ACT_4: ACT domain; PD 97.5 0.0011 2.3E-08 51.7 9.2 65 248-317 5-69 (80)
79 PRK13010 purU formyltetrahydro 97.5 0.0024 5.1E-08 62.3 13.3 36 248-283 8-43 (289)
80 COG0788 PurU Formyltetrahydrof 97.4 0.00081 1.8E-08 63.5 8.9 66 19-86 6-74 (287)
81 cd04887 ACT_MalLac-Enz ACT_Mal 97.3 0.0019 4.2E-08 49.2 8.8 61 252-318 2-62 (74)
82 cd04905 ACT_CM-PDT C-terminal 97.3 0.0016 3.5E-08 50.8 8.1 67 343-415 3-69 (80)
83 PRK06737 acetolactate synthase 97.2 0.0023 5E-08 49.5 8.2 65 109-179 3-68 (76)
84 cd04889 ACT_PDH-BS-like C-term 97.2 0.0013 2.9E-08 47.4 6.5 47 111-157 1-47 (56)
85 COG0788 PurU Formyltetrahydrof 97.2 0.0022 4.7E-08 60.6 8.9 69 106-178 5-74 (287)
86 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0043 9.4E-08 46.3 9.2 62 111-177 1-66 (73)
87 cd04888 ACT_PheB-BS C-terminal 97.1 0.0041 8.9E-08 47.5 8.6 63 110-177 2-65 (76)
88 CHL00100 ilvH acetohydroxyacid 97.1 0.004 8.6E-08 56.1 9.3 66 109-180 3-69 (174)
89 PRK13562 acetolactate synthase 97.0 0.0041 8.8E-08 48.9 7.9 66 109-179 3-69 (84)
90 PRK08178 acetolactate synthase 97.0 0.0047 1E-07 49.8 8.4 67 106-179 6-73 (96)
91 cd04898 ACT_ACR-like_4 ACT dom 97.0 0.0011 2.4E-08 50.4 4.4 68 251-318 2-71 (77)
92 cd04931 ACT_PAH ACT domain of 97.0 0.0042 9.1E-08 49.8 8.1 69 342-417 15-83 (90)
93 cd04909 ACT_PDH-BS C-terminal 97.0 0.0075 1.6E-07 45.3 9.0 48 109-156 2-50 (69)
94 cd04904 ACT_AAAH ACT domain of 96.9 0.0044 9.5E-08 47.7 7.6 64 344-415 3-66 (74)
95 TIGR00119 acolac_sm acetolacta 96.9 0.0076 1.6E-07 53.4 9.7 65 109-179 2-67 (157)
96 cd04877 ACT_TyrR N-terminal AC 96.9 0.0058 1.3E-07 46.8 7.8 34 110-143 2-35 (74)
97 PRK11895 ilvH acetolactate syn 96.8 0.0095 2.1E-07 53.0 9.8 65 109-179 3-68 (161)
98 cd04880 ACT_AAAH-PDT-like ACT 96.8 0.0073 1.6E-07 46.3 8.0 65 345-415 3-67 (75)
99 CHL00100 ilvH acetohydroxyacid 96.8 0.0064 1.4E-07 54.7 8.6 35 342-376 3-37 (174)
100 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.8 0.0088 1.9E-07 45.4 8.3 63 110-177 2-65 (79)
101 cd04905 ACT_CM-PDT C-terminal 96.8 0.014 3.1E-07 45.3 9.5 50 109-158 2-51 (80)
102 PRK11152 ilvM acetolactate syn 96.8 0.0085 1.8E-07 46.4 7.9 64 109-179 4-68 (76)
103 cd04886 ACT_ThrD-II-like C-ter 96.8 0.0077 1.7E-07 45.0 7.6 60 23-85 1-66 (73)
104 cd04879 ACT_3PGDH-like ACT_3PG 96.7 0.0078 1.7E-07 44.6 7.3 46 344-391 2-47 (71)
105 cd04878 ACT_AHAS N-terminal AC 96.7 0.013 2.9E-07 43.5 8.2 62 110-177 2-64 (72)
106 cd04908 ACT_Bt0572_1 N-termina 96.6 0.0086 1.9E-07 44.8 6.9 36 109-144 2-37 (66)
107 cd04889 ACT_PDH-BS-like C-term 96.6 0.0069 1.5E-07 43.6 6.1 47 344-393 1-47 (56)
108 cd04929 ACT_TPH ACT domain of 96.6 0.0094 2E-07 45.9 7.1 64 344-415 3-66 (74)
109 PRK06737 acetolactate synthase 96.6 0.016 3.6E-07 44.8 8.3 65 250-320 3-67 (76)
110 cd04878 ACT_AHAS N-terminal AC 96.6 0.0074 1.6E-07 44.9 6.4 62 343-413 2-63 (72)
111 PRK07431 aspartate kinase; Pro 96.6 1.4 3.1E-05 47.4 26.8 191 18-281 346-554 (587)
112 cd04908 ACT_Bt0572_1 N-termina 96.6 0.016 3.4E-07 43.3 8.0 58 21-85 2-59 (66)
113 cd04879 ACT_3PGDH-like ACT_3PG 96.5 0.0097 2.1E-07 44.1 6.6 45 111-155 2-47 (71)
114 cd04903 ACT_LSD C-terminal ACT 96.5 0.023 5E-07 42.1 8.3 45 111-155 2-47 (71)
115 PRK08577 hypothetical protein; 96.4 0.029 6.4E-07 48.4 10.0 68 106-177 54-122 (136)
116 cd04888 ACT_PheB-BS C-terminal 96.4 0.023 5.1E-07 43.2 8.5 62 251-318 2-64 (76)
117 cd04882 ACT_Bt0572_2 C-termina 96.4 0.017 3.6E-07 42.5 7.3 45 111-155 2-47 (65)
118 cd04877 ACT_TyrR N-terminal AC 96.4 0.012 2.7E-07 45.0 6.7 37 22-58 2-38 (74)
119 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.4 0.0096 2.1E-07 45.2 6.0 64 343-414 2-65 (79)
120 cd02116 ACT ACT domains are co 96.4 0.027 5.8E-07 38.6 7.8 46 111-156 1-46 (60)
121 cd04909 ACT_PDH-BS C-terminal 96.4 0.024 5.1E-07 42.5 7.9 61 21-85 2-64 (69)
122 cd04902 ACT_3PGDH-xct C-termin 96.4 0.018 3.9E-07 43.4 7.3 46 111-156 2-48 (73)
123 cd04902 ACT_3PGDH-xct C-termin 96.4 0.015 3.3E-07 43.8 6.9 46 345-392 3-48 (73)
124 PRK04435 hypothetical protein; 96.3 0.041 9E-07 48.2 10.3 71 103-177 64-134 (147)
125 cd04874 ACT_Af1403 N-terminal 96.3 0.034 7.4E-07 41.3 8.6 59 22-85 2-62 (72)
126 cd04874 ACT_Af1403 N-terminal 96.3 0.022 4.7E-07 42.4 7.5 46 110-155 2-47 (72)
127 PRK13562 acetolactate synthase 96.3 0.026 5.6E-07 44.4 7.8 65 251-321 4-69 (84)
128 cd04876 ACT_RelA-SpoT ACT dom 96.2 0.048 1E-06 39.4 8.6 45 111-155 1-45 (71)
129 PRK08178 acetolactate synthase 96.2 0.033 7.2E-07 44.9 8.1 66 248-320 7-72 (96)
130 cd04903 ACT_LSD C-terminal ACT 96.2 0.031 6.6E-07 41.4 7.6 33 344-376 2-34 (71)
131 cd04884 ACT_CBS C-terminal ACT 96.1 0.036 7.9E-07 42.0 7.9 33 111-143 2-34 (72)
132 cd04931 ACT_PAH ACT domain of 96.1 0.07 1.5E-06 42.7 9.7 76 242-321 7-82 (90)
133 PRK11152 ilvM acetolactate syn 96.1 0.03 6.6E-07 43.3 7.2 35 342-376 4-38 (76)
134 TIGR00119 acolac_sm acetolacta 96.0 0.04 8.6E-07 48.9 8.7 34 343-376 3-36 (157)
135 cd04901 ACT_3PGDH C-terminal A 96.0 0.0077 1.7E-07 45.0 3.6 58 344-414 2-59 (69)
136 cd04883 ACT_AcuB C-terminal AC 95.9 0.075 1.6E-06 39.9 8.9 59 21-85 2-63 (72)
137 PRK11895 ilvH acetolactate syn 95.9 0.052 1.1E-06 48.3 9.0 34 343-376 4-37 (161)
138 PRK08577 hypothetical protein; 95.9 0.13 2.7E-06 44.5 11.3 68 17-85 53-122 (136)
139 PF13710 ACT_5: ACT domain; PD 95.8 0.046 1E-06 40.7 6.8 57 117-179 1-58 (63)
140 cd04884 ACT_CBS C-terminal ACT 95.7 0.056 1.2E-06 41.0 7.4 33 23-55 2-34 (72)
141 cd04901 ACT_3PGDH C-terminal A 95.7 0.015 3.2E-07 43.4 4.1 44 111-155 2-45 (69)
142 PRK04435 hypothetical protein; 95.6 0.18 4E-06 44.1 11.0 73 241-318 61-133 (147)
143 PRK11899 prephenate dehydratas 95.5 0.048 1E-06 53.0 7.9 66 343-414 196-261 (279)
144 cd04882 ACT_Bt0572_2 C-termina 95.5 0.051 1.1E-06 39.8 6.4 33 344-376 2-34 (65)
145 cd04876 ACT_RelA-SpoT ACT dom 95.4 0.08 1.7E-06 38.1 7.2 47 23-69 1-48 (71)
146 cd04930 ACT_TH ACT domain of t 95.4 0.045 9.8E-07 45.9 6.2 66 342-415 42-107 (115)
147 cd04883 ACT_AcuB C-terminal AC 95.4 0.1 2.2E-06 39.2 7.7 48 109-156 2-50 (72)
148 PRK07334 threonine dehydratase 95.4 0.12 2.6E-06 52.9 10.6 67 106-177 324-394 (403)
149 cd02116 ACT ACT domains are co 95.3 0.13 2.7E-06 35.1 7.4 33 23-55 1-33 (60)
150 PRK06291 aspartate kinase; Pro 95.0 0.98 2.1E-05 47.2 16.4 109 247-375 319-435 (465)
151 COG1707 ACT domain-containing 95.0 0.099 2.1E-06 46.1 7.3 60 22-85 4-65 (218)
152 cd04904 ACT_AAAH ACT domain of 94.9 0.19 4E-06 38.5 8.1 49 252-301 3-51 (74)
153 TIGR00656 asp_kin_monofn aspar 94.7 2 4.4E-05 43.8 17.6 133 247-416 258-398 (401)
154 PRK06635 aspartate kinase; Rev 94.7 1.7 3.7E-05 44.4 17.0 108 109-280 263-374 (404)
155 cd04880 ACT_AAAH-PDT-like ACT 94.6 0.35 7.6E-06 36.8 8.9 65 111-177 2-66 (75)
156 cd04871 ACT_PSP_2 ACT domains 94.5 0.046 9.9E-07 43.2 3.7 63 110-178 1-72 (84)
157 PRK06635 aspartate kinase; Rev 94.5 1.2 2.6E-05 45.5 15.2 109 248-373 261-375 (404)
158 PRK08210 aspartate kinase I; R 94.5 1.7 3.6E-05 44.5 16.1 100 247-371 269-372 (403)
159 cd04871 ACT_PSP_2 ACT domains 94.4 0.039 8.4E-07 43.6 3.2 62 22-87 1-73 (84)
160 cd04929 ACT_TPH ACT domain of 94.4 0.32 6.9E-06 37.4 8.1 51 252-303 3-53 (74)
161 PRK11899 prephenate dehydratas 94.2 0.4 8.7E-06 46.6 10.4 54 249-303 194-247 (279)
162 PLN02551 aspartokinase 94.1 2.3 5E-05 45.1 16.4 114 246-375 363-481 (521)
163 PRK10872 relA (p)ppGpp synthet 94.0 0.29 6.3E-06 53.7 9.8 67 106-177 664-731 (743)
164 PF13710 ACT_5: ACT domain; PD 94.0 0.44 9.5E-06 35.4 7.9 56 29-87 1-58 (63)
165 PRK10622 pheA bifunctional cho 94.0 0.23 5.1E-06 50.5 8.5 67 342-414 298-364 (386)
166 PRK10872 relA (p)ppGpp synthet 93.8 0.41 8.8E-06 52.6 10.5 75 238-318 654-730 (743)
167 PRK11092 bifunctional (p)ppGpp 93.6 0.36 7.8E-06 52.9 9.7 66 107-177 625-690 (702)
168 PRK07334 threonine dehydratase 93.6 0.45 9.8E-06 48.7 9.9 66 248-318 325-393 (403)
169 TIGR00719 sda_beta L-serine de 93.6 0.39 8.5E-06 44.6 8.6 49 342-392 149-197 (208)
170 COG0077 PheA Prephenate dehydr 93.5 0.28 6.2E-06 47.4 7.6 55 342-400 195-249 (279)
171 TIGR00719 sda_beta L-serine de 93.5 0.34 7.4E-06 45.0 8.0 47 246-292 145-191 (208)
172 cd04885 ACT_ThrD-I Tandem C-te 93.4 0.6 1.3E-05 34.9 7.9 60 112-177 2-61 (68)
173 TIGR00656 asp_kin_monofn aspar 93.4 2.9 6.2E-05 42.7 15.4 106 19-138 259-370 (401)
174 PRK11092 bifunctional (p)ppGpp 93.0 0.65 1.4E-05 50.9 10.4 74 239-318 615-689 (702)
175 PRK09436 thrA bifunctional asp 93.0 2.7 5.9E-05 47.1 15.5 113 247-375 313-433 (819)
176 COG0077 PheA Prephenate dehydr 92.8 0.81 1.8E-05 44.3 9.7 54 248-303 193-247 (279)
177 PF13840 ACT_7: ACT domain ; P 92.8 0.54 1.2E-05 35.0 6.8 46 106-157 4-53 (65)
178 PRK09034 aspartate kinase; Rev 92.7 3.6 7.8E-05 42.9 15.1 111 247-375 306-422 (454)
179 TIGR00691 spoT_relA (p)ppGpp s 92.6 0.62 1.3E-05 51.0 9.6 66 107-177 609-674 (683)
180 PF13840 ACT_7: ACT domain ; P 92.5 0.38 8.3E-06 35.8 5.6 31 343-373 8-42 (65)
181 PRK09181 aspartate kinase; Val 92.1 8 0.00017 40.6 16.8 107 247-375 327-438 (475)
182 TIGR00691 spoT_relA (p)ppGpp s 92.0 1.1 2.3E-05 49.2 10.5 74 239-318 599-673 (683)
183 cd04930 ACT_TH ACT domain of t 92.0 1 2.2E-05 37.8 8.1 52 249-302 41-93 (115)
184 PRK06291 aspartate kinase; Pro 92.0 6.2 0.00014 41.2 15.9 109 19-141 320-434 (465)
185 PRK06382 threonine dehydratase 91.9 1.1 2.3E-05 46.1 10.0 68 105-177 327-398 (406)
186 COG1707 ACT domain-containing 91.8 0.61 1.3E-05 41.3 6.7 39 110-148 4-42 (218)
187 COG0317 SpoT Guanosine polypho 91.7 1.1 2.3E-05 48.8 9.9 75 238-318 615-690 (701)
188 PRK11898 prephenate dehydratas 91.6 0.63 1.4E-05 45.4 7.5 67 343-415 198-265 (283)
189 TIGR00657 asp_kinases aspartat 91.5 13 0.00028 38.5 17.6 107 247-373 300-413 (441)
190 PRK09084 aspartate kinase III; 91.5 10 0.00023 39.4 16.8 107 246-369 303-415 (448)
191 PRK09034 aspartate kinase; Rev 91.2 7.9 0.00017 40.3 15.7 109 19-141 307-421 (454)
192 PRK09181 aspartate kinase; Val 91.2 9.6 0.00021 40.0 16.3 105 19-141 328-437 (475)
193 COG0527 LysC Aspartokinases [A 91.2 12 0.00026 39.0 16.7 109 246-374 304-419 (447)
194 PRK08210 aspartate kinase I; R 91.2 8.7 0.00019 39.3 15.8 99 19-138 270-372 (403)
195 cd04885 ACT_ThrD-I Tandem C-te 90.9 1.4 3.1E-05 32.9 7.2 59 253-319 2-61 (68)
196 TIGR01268 Phe4hydrox_tetr phen 90.5 0.92 2E-05 46.6 7.6 68 342-416 17-84 (436)
197 PRK10622 pheA bifunctional cho 90.4 2 4.3E-05 43.9 10.0 55 248-303 296-350 (386)
198 PLN02317 arogenate dehydratase 89.9 1.4 3E-05 44.7 8.2 70 342-414 284-364 (382)
199 PRK11790 D-3-phosphoglycerate 89.7 0.72 1.6E-05 47.4 6.3 48 107-155 337-384 (409)
200 cd04906 ACT_ThrD-I_1 First of 89.5 3.6 7.8E-05 32.2 8.9 62 110-177 3-64 (85)
201 COG0317 SpoT Guanosine polypho 89.5 1.8 3.9E-05 47.2 9.2 47 105-152 624-670 (701)
202 COG0440 IlvH Acetolactate synt 89.4 1.6 3.5E-05 38.7 7.3 67 108-180 4-71 (163)
203 TIGR01270 Trp_5_monoox tryptop 89.0 1.2 2.5E-05 46.1 7.1 67 342-415 32-98 (464)
204 PLN02551 aspartokinase 88.5 15 0.00032 39.1 15.2 111 19-141 365-480 (521)
205 PRK08818 prephenate dehydrogen 88.1 1.5 3.3E-05 44.4 7.2 50 341-396 295-345 (370)
206 TIGR01127 ilvA_1Cterm threonin 87.6 4.4 9.5E-05 41.1 10.4 67 106-177 303-373 (380)
207 PRK13581 D-3-phosphoglycerate 86.8 1.7 3.8E-05 46.1 7.2 61 343-414 454-514 (526)
208 PRK09436 thrA bifunctional asp 86.6 20 0.00044 40.3 15.7 114 18-141 313-432 (819)
209 KOG2663 Acetolactate synthase, 86.2 2.2 4.8E-05 40.3 6.5 38 107-144 76-113 (309)
210 PRK06382 threonine dehydratase 86.1 3 6.5E-05 42.8 8.2 64 19-85 329-398 (406)
211 PRK08198 threonine dehydratase 85.8 7 0.00015 40.0 10.7 38 105-142 324-361 (404)
212 TIGR01327 PGDH D-3-phosphoglyc 85.7 1.9 4.2E-05 45.8 6.8 61 343-414 453-513 (525)
213 COG0440 IlvH Acetolactate synt 85.3 3.9 8.5E-05 36.3 7.3 67 250-323 5-72 (163)
214 PRK11790 D-3-phosphoglycerate 85.3 2 4.3E-05 44.2 6.5 62 19-85 337-398 (409)
215 PRK08818 prephenate dehydrogen 84.4 2.6 5.6E-05 42.7 6.7 49 107-157 294-343 (370)
216 PRK06349 homoserine dehydrogen 84.0 4.3 9.3E-05 42.0 8.2 51 107-158 347-397 (426)
217 cd04913 ACT_AKii-LysC-BS-like_ 83.7 11 0.00024 27.6 8.5 31 111-141 4-35 (75)
218 TIGR01127 ilvA_1Cterm threonin 83.6 4.7 0.0001 40.9 8.3 62 21-85 306-373 (380)
219 cd04906 ACT_ThrD-I_1 First of 83.4 9.2 0.0002 29.9 8.2 60 251-318 3-63 (85)
220 PRK06545 prephenate dehydrogen 83.2 3.2 7E-05 41.8 6.8 38 18-55 288-325 (359)
221 TIGR01327 PGDH D-3-phosphoglyc 83.1 2.2 4.7E-05 45.4 5.8 64 247-314 449-512 (525)
222 PRK06545 prephenate dehydrogen 83.1 1.8 3.9E-05 43.6 4.9 40 105-144 287-326 (359)
223 PRK09224 threonine dehydratase 83.1 67 0.0015 34.0 17.1 145 247-414 326-485 (504)
224 PRK13581 D-3-phosphoglycerate 82.5 3 6.6E-05 44.3 6.6 65 246-314 449-513 (526)
225 PRK08198 threonine dehydratase 82.2 7.7 0.00017 39.6 9.3 67 342-414 328-395 (404)
226 PRK09466 metL bifunctional asp 82.1 24 0.00052 39.6 13.6 106 247-373 315-426 (810)
227 PRK08961 bifunctional aspartat 81.8 42 0.00091 38.0 15.7 105 246-369 319-429 (861)
228 TIGR00657 asp_kinases aspartat 81.6 18 0.00039 37.5 11.8 108 19-140 301-413 (441)
229 cd04932 ACT_AKiii-LysC-EC_1 AC 81.3 13 0.00029 28.4 8.1 31 109-139 2-35 (75)
230 PLN02550 threonine dehydratase 80.5 46 0.001 35.9 14.5 114 21-141 418-542 (591)
231 PRK12483 threonine dehydratase 80.4 86 0.0019 33.4 17.0 116 19-141 344-472 (521)
232 COG4492 PheB ACT domain-contai 80.4 7.6 0.00016 33.2 6.8 66 341-414 72-137 (150)
233 COG2150 Predicted regulator of 80.1 3.3 7.2E-05 36.5 4.8 35 19-53 94-128 (167)
234 COG0527 LysC Aspartokinases [A 79.6 62 0.0013 33.7 14.8 108 18-140 305-418 (447)
235 COG4492 PheB ACT domain-contai 79.5 14 0.0003 31.6 8.1 69 105-177 69-137 (150)
236 cd04922 ACT_AKi-HSDH-ThrA_2 AC 79.2 20 0.00043 25.8 8.3 33 250-282 2-37 (66)
237 PRK10820 DNA-binding transcrip 79.2 3.9 8.5E-05 43.4 6.1 34 343-376 2-35 (520)
238 PRK11898 prephenate dehydratas 78.4 14 0.00031 35.9 9.3 54 249-303 196-250 (283)
239 cd04891 ACT_AK-LysC-DapG-like_ 78.0 7.3 0.00016 27.2 5.5 42 115-156 8-49 (61)
240 cd04912 ACT_AKiii-LysC-EC-like 77.9 22 0.00048 26.9 8.4 63 109-177 2-67 (75)
241 COG2150 Predicted regulator of 77.8 3.9 8.5E-05 36.1 4.5 35 107-141 92-128 (167)
242 PLN02317 arogenate dehydratase 77.5 14 0.00031 37.5 9.1 53 249-303 283-350 (382)
243 COG3978 Acetolactate synthase 77.3 18 0.00039 28.1 7.4 68 248-322 2-69 (86)
244 PRK12483 threonine dehydratase 76.5 1.1E+02 0.0024 32.6 17.3 146 246-414 342-502 (521)
245 COG3978 Acetolactate synthase 76.4 26 0.00056 27.3 8.0 66 108-180 3-69 (86)
246 PRK08526 threonine dehydratase 76.0 32 0.00069 35.3 11.4 37 106-142 324-360 (403)
247 PRK06349 homoserine dehydrogen 75.9 10 0.00023 39.1 8.0 64 341-413 348-411 (426)
248 cd04935 ACT_AKiii-DAPDC_1 ACT 75.0 17 0.00037 27.7 7.1 56 116-177 12-67 (75)
249 TIGR01268 Phe4hydrox_tetr phen 73.9 18 0.00038 37.4 8.8 67 249-319 16-82 (436)
250 cd04890 ACT_AK-like_1 ACT doma 73.5 26 0.00057 25.0 7.5 36 350-393 12-47 (62)
251 cd04935 ACT_AKiii-DAPDC_1 ACT 73.5 38 0.00082 25.8 8.7 56 257-319 12-67 (75)
252 cd04919 ACT_AK-Hom3_2 ACT doma 73.3 32 0.00069 24.8 8.4 34 250-283 2-38 (66)
253 TIGR01270 Trp_5_monoox tryptop 72.7 17 0.00037 37.7 8.4 58 245-303 27-85 (464)
254 KOG2663 Acetolactate synthase, 72.5 6 0.00013 37.5 4.6 36 19-54 76-111 (309)
255 cd04937 ACT_AKi-DapG-BS_2 ACT 72.4 34 0.00074 24.8 8.0 28 251-278 3-33 (64)
256 PRK09084 aspartate kinase III; 72.3 39 0.00084 35.2 11.2 105 19-136 305-415 (448)
257 cd04937 ACT_AKi-DapG-BS_2 ACT 71.9 35 0.00077 24.7 8.6 28 110-137 3-33 (64)
258 PRK08841 aspartate kinase; Val 71.2 74 0.0016 32.5 12.7 95 247-373 256-350 (392)
259 PRK09224 threonine dehydratase 71.1 70 0.0015 33.8 12.9 119 20-142 328-456 (504)
260 cd04922 ACT_AKi-HSDH-ThrA_2 AC 69.6 38 0.00083 24.2 8.8 32 110-141 3-37 (66)
261 cd04919 ACT_AK-Hom3_2 ACT doma 69.4 39 0.00085 24.3 8.6 33 109-141 2-37 (66)
262 cd04868 ACT_AK-like ACT domain 69.0 32 0.00069 23.4 7.0 33 251-283 2-37 (60)
263 cd04892 ACT_AK-like_2 ACT doma 68.8 34 0.00074 23.8 7.3 32 343-374 2-36 (65)
264 PRK09466 metL bifunctional asp 68.7 59 0.0013 36.6 12.2 102 19-137 316-423 (810)
265 PF05088 Bac_GDH: Bacterial NA 67.9 2.8E+02 0.0062 33.6 37.0 78 342-419 490-568 (1528)
266 TIGR02079 THD1 threonine dehyd 67.7 81 0.0018 32.4 12.2 68 105-177 322-390 (409)
267 cd04891 ACT_AK-LysC-DapG-like_ 67.1 8.9 0.00019 26.7 3.7 39 27-66 8-48 (61)
268 COG3283 TyrR Transcriptional r 66.2 12 0.00027 37.6 5.5 59 343-418 2-60 (511)
269 cd04913 ACT_AKii-LysC-BS-like_ 66.1 9.5 0.00021 28.0 3.9 26 27-52 9-34 (75)
270 cd04912 ACT_AKiii-LysC-EC-like 65.9 55 0.0012 24.6 9.5 62 250-318 2-66 (75)
271 TIGR01124 ilvA_2Cterm threonin 65.9 1.8E+02 0.004 30.7 16.3 116 247-375 323-452 (499)
272 cd04924 ACT_AK-Arch_2 ACT doma 64.9 48 0.001 23.6 8.3 34 250-283 2-38 (66)
273 PRK08639 threonine dehydratase 64.7 87 0.0019 32.2 11.8 69 105-177 333-401 (420)
274 PRK08961 bifunctional aspartat 64.3 1.9E+02 0.0041 32.9 15.3 103 19-136 321-429 (861)
275 cd04890 ACT_AK-like_1 ACT doma 62.3 51 0.0011 23.5 7.1 37 116-157 11-47 (62)
276 cd04868 ACT_AK-like ACT domain 61.4 15 0.00032 25.2 4.0 32 110-141 2-36 (60)
277 PRK08526 threonine dehydratase 60.8 41 0.0009 34.5 8.5 36 19-54 325-360 (403)
278 TIGR01124 ilvA_2Cterm threonin 57.3 1.6E+02 0.0034 31.2 12.3 65 106-177 323-387 (499)
279 PRK08841 aspartate kinase; Val 57.2 2.3E+02 0.005 28.9 15.1 121 19-180 257-377 (392)
280 cd04923 ACT_AK-LysC-DapG-like_ 55.6 68 0.0015 22.4 7.9 56 344-416 3-61 (63)
281 PF05088 Bac_GDH: Bacterial NA 54.6 84 0.0018 37.8 10.5 75 16-90 485-568 (1528)
282 cd04924 ACT_AK-Arch_2 ACT doma 53.1 79 0.0017 22.4 8.9 33 109-141 2-37 (66)
283 PRK14646 hypothetical protein; 52.4 1.7E+02 0.0036 25.8 10.8 92 261-368 8-102 (155)
284 cd04892 ACT_AK-like_2 ACT doma 51.1 80 0.0017 21.8 8.3 32 110-141 2-36 (65)
285 PRK14634 hypothetical protein; 51.0 1.7E+02 0.0038 25.7 10.8 79 261-352 8-88 (155)
286 cd04914 ACT_AKi-DapG-BS_1 ACT 50.9 27 0.0006 25.8 4.0 31 21-51 2-33 (67)
287 cd04916 ACT_AKiii-YclM-BS_2 AC 50.5 89 0.0019 22.2 8.3 34 250-283 2-38 (66)
288 cd04932 ACT_AKiii-LysC-EC_1 AC 50.4 22 0.00048 27.1 3.5 26 256-281 11-36 (75)
289 PLN02550 threonine dehydratase 50.1 3.7E+02 0.008 29.2 16.4 145 247-414 415-572 (591)
290 PRK05925 aspartate kinase; Pro 50.0 3.2E+02 0.0069 28.4 16.6 106 247-373 298-406 (440)
291 cd04934 ACT_AK-Hom3_1 CT domai 49.6 75 0.0016 24.0 6.3 53 117-177 13-65 (73)
292 cd04921 ACT_AKi-HSDH-ThrA-like 49.4 1E+02 0.0022 23.0 7.2 33 109-141 2-37 (80)
293 cd04923 ACT_AK-LysC-DapG-like_ 49.3 88 0.0019 21.8 7.8 31 251-281 2-35 (63)
294 PRK00907 hypothetical protein; 49.3 45 0.00096 26.8 5.2 48 20-67 17-68 (92)
295 cd04916 ACT_AKiii-YclM-BS_2 AC 48.7 95 0.0021 22.0 8.7 32 110-141 3-37 (66)
296 cd04936 ACT_AKii-LysC-BS-like_ 48.7 90 0.002 21.7 7.9 30 344-373 3-35 (63)
297 cd04921 ACT_AKi-HSDH-ThrA-like 48.6 1.1E+02 0.0024 22.8 8.6 34 250-283 2-38 (80)
298 TIGR02079 THD1 threonine dehyd 47.1 1.4E+02 0.003 30.6 9.8 67 246-318 322-389 (409)
299 PF08753 NikR_C: NikR C termin 46.9 1.3E+02 0.0028 23.1 8.2 63 20-85 2-65 (78)
300 cd04914 ACT_AKi-DapG-BS_1 ACT 46.4 33 0.00072 25.4 3.9 30 110-139 3-33 (67)
301 PRK14636 hypothetical protein; 46.2 2.3E+02 0.0049 25.6 10.6 63 259-323 4-66 (176)
302 PRK10820 DNA-binding transcrip 45.9 35 0.00076 36.2 5.4 34 110-143 2-35 (520)
303 PRK14630 hypothetical protein; 45.6 1.7E+02 0.0037 25.4 8.7 62 258-323 6-67 (143)
304 cd04918 ACT_AK1-AT_2 ACT domai 44.8 1.2E+02 0.0026 22.0 8.5 33 110-142 3-37 (65)
305 PRK14645 hypothetical protein; 44.8 2.2E+02 0.0048 25.1 11.0 62 260-323 9-70 (154)
306 TIGR01269 Tyr_3_monoox tyrosin 44.0 63 0.0014 33.4 6.5 68 342-415 40-107 (457)
307 cd04918 ACT_AK1-AT_2 ACT domai 43.9 1.2E+02 0.0027 21.9 8.2 33 251-283 3-37 (65)
308 PRK14638 hypothetical protein; 41.7 2.4E+02 0.0052 24.6 10.3 58 263-323 11-68 (150)
309 cd04915 ACT_AK-Ectoine_2 ACT d 41.6 1.2E+02 0.0026 22.2 6.3 33 343-375 4-38 (66)
310 PRK08639 threonine dehydratase 41.3 1.8E+02 0.004 29.8 9.7 67 246-318 333-400 (420)
311 COG3283 TyrR Transcriptional r 41.2 72 0.0016 32.4 6.2 33 251-283 2-34 (511)
312 cd04933 ACT_AK1-AT_1 ACT domai 40.9 26 0.00057 27.1 2.6 25 115-139 11-35 (78)
313 PRK04460 nickel responsive reg 39.7 1.8E+02 0.004 25.0 7.9 62 20-84 55-117 (137)
314 PF00903 Glyoxalase: Glyoxalas 39.2 66 0.0014 25.6 5.0 40 355-399 87-126 (128)
315 PRK00907 hypothetical protein; 38.9 1.7E+02 0.0036 23.5 7.0 64 249-317 17-82 (92)
316 cd04936 ACT_AKii-LysC-BS-like_ 38.3 1.4E+02 0.0029 20.8 8.2 31 110-140 2-35 (63)
317 PRK14633 hypothetical protein; 38.0 2.6E+02 0.0057 24.4 8.8 88 262-367 6-95 (150)
318 cd04920 ACT_AKiii-DAPDC_2 ACT 37.2 1.6E+02 0.0034 21.3 7.1 28 110-137 2-32 (63)
319 KOG2797 Prephenate dehydratase 37.0 76 0.0016 31.2 5.5 135 258-400 191-345 (377)
320 PRK01002 nickel responsive reg 37.0 2.3E+02 0.005 24.5 8.2 61 21-84 59-120 (141)
321 PRK14646 hypothetical protein; 36.4 1.9E+02 0.004 25.5 7.6 56 354-418 9-64 (155)
322 cd04933 ACT_AK1-AT_1 ACT domai 35.5 50 0.0011 25.5 3.4 26 349-374 12-37 (78)
323 cd04910 ACT_AK-Ectoine_1 ACT d 35.4 2E+02 0.0043 21.8 7.5 32 344-375 4-38 (71)
324 PRK02047 hypothetical protein; 34.5 1.3E+02 0.0027 24.0 5.7 47 20-66 16-66 (91)
325 TIGR02793 nikR nickel-responsi 34.5 2.7E+02 0.0058 23.8 8.0 62 20-84 53-115 (129)
326 PRK02967 nickel responsive reg 34.3 2.7E+02 0.0058 24.1 8.1 63 19-84 54-117 (139)
327 PRK14632 hypothetical protein; 33.7 3.5E+02 0.0076 24.2 9.7 91 33-136 10-101 (172)
328 PRK00630 nickel responsive reg 33.4 2.7E+02 0.0058 24.4 8.0 62 20-84 66-128 (148)
329 COG3603 Uncharacterized conser 33.2 1.4E+02 0.0031 25.1 5.8 36 105-140 60-98 (128)
330 PRK14634 hypothetical protein; 32.9 1.8E+02 0.004 25.5 7.0 55 354-417 9-63 (155)
331 COG0779 Uncharacterized protei 32.8 3.5E+02 0.0075 23.9 9.3 91 31-136 8-102 (153)
332 cd04915 ACT_AK-Ectoine_2 ACT d 32.4 2E+02 0.0043 21.0 8.6 34 250-283 3-38 (66)
333 PRK14640 hypothetical protein; 30.7 3.7E+02 0.008 23.5 10.7 57 262-323 8-65 (152)
334 PRK14632 hypothetical protein; 30.7 3.9E+02 0.0084 24.0 8.8 55 263-322 11-65 (172)
335 PRK14647 hypothetical protein; 29.7 3.9E+02 0.0085 23.5 9.1 58 262-323 10-67 (159)
336 PLN02828 formyltetrahydrofolat 29.0 1.1E+02 0.0024 29.6 5.3 102 37-145 1-107 (268)
337 COG3603 Uncharacterized conser 28.8 54 0.0012 27.6 2.7 30 344-373 66-98 (128)
338 cd04920 ACT_AKiii-DAPDC_2 ACT 28.4 2.3E+02 0.005 20.4 7.6 27 251-277 2-31 (63)
339 cd07253 Glo_EDI_BRP_like_2 Thi 27.8 1.2E+02 0.0027 23.9 4.8 43 355-400 79-121 (125)
340 PF02576 DUF150: Uncharacteris 27.4 3.4E+02 0.0075 23.1 7.7 72 266-352 2-75 (141)
341 PRK00341 hypothetical protein; 27.0 1.9E+02 0.0041 23.0 5.5 45 21-66 18-66 (91)
342 cd04934 ACT_AK-Hom3_1 CT domai 26.5 82 0.0018 23.8 3.2 25 350-374 13-37 (73)
343 cd08357 Glo_EDI_BRP_like_18 Th 26.4 99 0.0022 24.7 4.0 45 354-400 77-121 (125)
344 PRK14633 hypothetical protein; 26.3 4.4E+02 0.0095 23.0 9.9 92 33-137 6-98 (150)
345 PRK00092 ribosome maturation p 26.1 4.4E+02 0.0095 22.9 9.7 58 262-323 9-66 (154)
346 PTZ00324 glutamate dehydrogena 24.2 3.2E+02 0.0069 31.5 8.4 48 114-161 239-286 (1002)
347 cd04907 ACT_ThrD-I_2 Second of 23.7 3.4E+02 0.0075 20.9 6.6 60 344-414 4-63 (81)
348 PRK14630 hypothetical protein; 23.7 4.8E+02 0.01 22.6 9.6 58 29-87 6-65 (143)
349 cd04911 ACT_AKiii-YclM-BS_1 AC 23.0 1.8E+02 0.004 22.4 4.5 56 350-417 13-68 (76)
350 PRK00110 hypothetical protein; 22.2 6.9E+02 0.015 23.8 9.8 102 17-143 93-199 (245)
351 PRK14639 hypothetical protein; 22.2 5.1E+02 0.011 22.3 9.9 54 266-323 3-56 (140)
352 PRK04998 hypothetical protein; 21.5 2.8E+02 0.006 21.8 5.5 41 20-60 15-57 (88)
353 PRK06724 hypothetical protein; 21.5 1.4E+02 0.003 25.0 4.1 44 354-400 76-119 (128)
354 TIGR01033 DNA-binding regulato 20.9 7.2E+02 0.016 23.5 9.9 104 16-142 92-200 (238)
355 COG1255 Uncharacterized protei 20.9 1.5E+02 0.0033 24.9 3.9 37 353-393 23-59 (129)
356 cd08346 PcpA_N_like N-terminal 20.6 1.5E+02 0.0033 23.4 4.1 38 355-400 87-124 (126)
357 COG0779 Uncharacterized protei 20.1 6E+02 0.013 22.3 8.5 78 261-353 9-88 (153)
358 cd08356 Glo_EDI_BRP_like_17 Th 20.1 1.3E+02 0.0028 24.1 3.5 45 355-400 66-110 (113)
359 cd04907 ACT_ThrD-I_2 Second of 20.0 4.1E+02 0.009 20.4 7.6 61 110-177 3-63 (81)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.3e-28 Score=270.37 Aligned_cols=181 Identities=22% Similarity=0.304 Sum_probs=155.0
Q ss_pred CCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccc
Q 014754 103 PTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGES 182 (419)
Q Consensus 103 ~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~ 182 (419)
..+.+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|||.+.+|..++++++++|++.|.++|.+.
T Consensus 672 ~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~ 751 (854)
T PRK01759 672 RFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTN 751 (854)
T ss_pred cCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 45568999999999999999999999999999999999999889999999999999887667788999999999999765
Q ss_pred ccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchH
Q 014754 183 CISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGL 262 (419)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGL 262 (419)
. . . ..+... . ++...+..||+|.|+|+.+..+|+|+|.+.|||||
T Consensus 752 ~-~----~--------------~~~~~~---------------~-~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGL 796 (854)
T PRK01759 752 K-L----K--------------KLNLEE---------------N-HKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGL 796 (854)
T ss_pred C-C----c--------------chhccc---------------c-ccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHH
Confidence 2 0 0 000000 0 11113456899999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHh
Q 014754 263 LYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEM 321 (419)
Q Consensus 263 L~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l 321 (419)
||+|+++|.++|++|+.|+|+ |.|+++.|+||| +.+|.+++++++ ++|+++|.+++
T Consensus 797 L~~I~~~l~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 797 LAQVSQVFSELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred HHHHHHHHHHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 999999999999999999999 589999999999 788999997655 99999988765
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=4.8e-28 Score=266.66 Aligned_cols=184 Identities=18% Similarity=0.201 Sum_probs=157.3
Q ss_pred CCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccc
Q 014754 103 PTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGES 182 (419)
Q Consensus 103 ~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~ 182 (419)
..+.+.+.|+|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|||++.+|..++++++++|++.|.++|.+.
T Consensus 696 ~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 696 QATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQS 775 (884)
T ss_pred cCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 44567999999999999999999999999999999999999989999999999999887667788999999999999765
Q ss_pred ccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchH
Q 014754 183 CISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGL 262 (419)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGL 262 (419)
.. . . ...++ + + .+..++..||+|.|+|+.++.+|+|+|.+.|||||
T Consensus 776 ~~-~-----~----------~~~~~---------------~--~-~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGL 821 (884)
T PRK05007 776 SP-Q-----P----------PKPRR---------------L--P-AKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGL 821 (884)
T ss_pred CC-C-----c----------ccccc---------------c--c-cccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHH
Confidence 20 0 0 00000 0 0 01113457899999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 263 LYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 263 L~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
||+|+++|.++|++|++|+|+ |.|+++.|+||| +.+|.+++ +++++.|+++|.+++..
T Consensus 822 L~~I~~~l~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 822 LARVGKIFADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred HHHHHHHHHHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 999999999999999999999 589999999999 77899998 67889999999988753
No 3
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.94 E-value=1.7e-25 Score=246.91 Aligned_cols=184 Identities=24% Similarity=0.311 Sum_probs=153.0
Q ss_pred CCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHccc
Q 014754 104 TCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLH-TKKRQDETCEQLHAVLGES 182 (419)
Q Consensus 104 ~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~-~~~~~~~l~~~L~~~l~~~ 182 (419)
.+.+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|||++.+|..+ +++++++|++.|.++|.+.
T Consensus 664 ~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~ 743 (850)
T TIGR01693 664 RPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGL 743 (850)
T ss_pred CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 446899999999999999999999999999999999999889999999999999988654 4567999999999999765
Q ss_pred ccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchH
Q 014754 183 CISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGL 262 (419)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGL 262 (419)
. . . +. ...++ +.+. .+...+.++|+|.|+|+.++.+|+|+|.|.|||||
T Consensus 744 ~-~----~--~~--------~~~~~---------------~~~~-~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGl 792 (850)
T TIGR01693 744 A-K----D--PD--------TISAR---------------RARR-RRLQHFAVPPRVTILNTASRKATIMEVRALDRPGL 792 (850)
T ss_pred C-c----c--cc--------ccccc---------------cCCc-ccccCCCCCCeEEEccCCCCCeEEEEEEECCccHH
Confidence 2 0 0 00 00000 0000 01113456899999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHh
Q 014754 263 LYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEM 321 (419)
Q Consensus 263 L~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l 321 (419)
|++|+++|+++|++|++|+|+ |.|+++.|+||+ +..|.++++ ++++.|+++|.+++
T Consensus 793 l~~i~~~l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 793 LARVGRTLEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHHHHHHHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999999999999 479999999999 677999997 78899999988765
No 4
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=3e-25 Score=244.63 Aligned_cols=184 Identities=17% Similarity=0.224 Sum_probs=155.8
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCC--CHHHHHHHHHHHHHHHcccc
Q 014754 106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLH--TKKRQDETCEQLHAVLGESC 183 (419)
Q Consensus 106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~--~~~~~~~l~~~L~~~l~~~~ 183 (419)
.+.+.|.|+++||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.+++|..+ +++++++|++.|.++|.++.
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~ 781 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD 781 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999999999999999999999988753 45789999999999997652
Q ss_pred cccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHH
Q 014754 184 ISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLL 263 (419)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL 263 (419)
. +. . .+.++. . .....+..+|.|.|+++.+.++|+|+|.+.||||||
T Consensus 782 ~-----~~--~--------~~~~~~-~-----------------~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLL 828 (895)
T PRK00275 782 D-----YP--T--------IIQRRV-P-----------------RQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLL 828 (895)
T ss_pred c-----cc--h--------hhhhhh-h-----------------hhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHH
Confidence 0 00 0 011110 0 001123468999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcCC
Q 014754 264 YDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLHP 324 (419)
Q Consensus 264 ~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~~ 324 (419)
++|+.+|..+|+||.+|+|.| .|+++.|+||| +.+|.++.+++++++|+++|..+|..+
T Consensus 829 a~I~~~L~~~~l~I~~AkI~T--~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 829 ARIGRIFLEFDLSLQNAKIAT--LGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred HHHHHHHHHCCCEEEEeEEEe--cCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999996 59999999999 788999998888999999999888653
No 5
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=1e-24 Score=238.98 Aligned_cols=180 Identities=17% Similarity=0.218 Sum_probs=151.0
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccccc
Q 014754 105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCI 184 (419)
Q Consensus 105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~ 184 (419)
..+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.|.. .++++++++.|.++|.++.
T Consensus 687 ~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~~- 763 (869)
T PRK04374 687 DNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGDL- 763 (869)
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCCC-
Confidence 4478999999999999999999999999999999999999999999999999988763 4668889999999997652
Q ss_pred ccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHH
Q 014754 185 SCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLY 264 (419)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~ 264 (419)
.... +. +. +.+ .+...+.+||+|.|+|+.+.++|+|+|.+.||||||+
T Consensus 764 ~~~~-~~-------~~--~~~----------------------~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa 811 (869)
T PRK04374 764 QKVR-PA-------RR--AVP----------------------RQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLA 811 (869)
T ss_pred Cccc-cc-------cc--cCc----------------------ccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHH
Confidence 0000 00 00 000 0112345789999999999999999999999999999
Q ss_pred HHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754 265 DIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEML 322 (419)
Q Consensus 265 ~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~ 322 (419)
+|+.+|+++|++|..|+|+| .|+++.|+||| +.+|.+++++++ +.|+++|.+.+.
T Consensus 812 ~Ia~~l~~~~l~I~~AkI~T--~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 812 DVAHVLRMQHLRVHDARIAT--FGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence 99999999999999999995 69999999999 788888886655 999999988774
No 6
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=1.4e-24 Score=237.97 Aligned_cols=174 Identities=21% Similarity=0.197 Sum_probs=145.4
Q ss_pred CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCc-ccHHHHHH
Q 014754 5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSI-IRWTNLKN 81 (419)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~-~~~~~l~~ 81 (419)
.+|+++.+...+..++++|+|+++|+||||++||++|+.+|+||++|+|+| ||+ ++|+|+|++++|.+ .+|+++++
T Consensus 675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~-~ld~f~V~~~~~~~~~~~~~i~~ 753 (869)
T PRK04374 675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDA-IFDVFEVLPQDTYADGDPQRLAA 753 (869)
T ss_pred CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCE-EEEEEEEeCCCCCChHHHHHHHH
Confidence 467777776567778999999999999999999999999999999999996 888 58999999998853 57888999
Q ss_pred HHHhhCCCCCc--cc--c--ccc----------CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec
Q 014754 82 RLMLECPSCSV--SF--Y--FNQ----------LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP 145 (419)
Q Consensus 82 ~Le~~L~~~~~--~~--~--~~~----------~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~ 145 (419)
.|+++|.+... .. + +++ ...+..+...|+|+|+++||||||++|+++|+.+|+||++|+|+|.
T Consensus 754 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~- 832 (869)
T PRK04374 754 ALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF- 832 (869)
T ss_pred HHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-
Confidence 99999977432 10 0 011 1123556689999999999999999999999999999999999986
Q ss_pred CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754 146 DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 146 ~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~ 180 (419)
|++++|+|||++.+|...+++..++|+++|.+.|+
T Consensus 833 g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 833 GERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 99999999999988875544444999999999874
No 7
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=1.4e-24 Score=239.30 Aligned_cols=174 Identities=21% Similarity=0.245 Sum_probs=147.6
Q ss_pred CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCc---ccHHHH
Q 014754 5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSI---IRWTNL 79 (419)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~---~~~~~l 79 (419)
.+|.|. .++++..++++|+|+++|+||||++||++|+.+|+||++|+|+| ||+ ++|+|+|++++|.+ .++++|
T Consensus 687 ~~p~V~-i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~-alD~F~V~d~~g~~~~~~~~~~I 764 (884)
T PRK05007 687 DKPLVL-LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGM-AMDTFIVLEPDGSPLSQDRHQVI 764 (884)
T ss_pred CCCeEE-EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCe-EEEEEEEECCCCCCCCHHHHHHH
Confidence 356666 45567779999999999999999999999999999999999987 777 58999999998865 367889
Q ss_pred HHHHHhhCCCCCcc--cc---c----------ccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754 80 KNRLMLECPSCSVS--FY---F----------NQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT 144 (419)
Q Consensus 80 ~~~Le~~L~~~~~~--~~---~----------~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~ 144 (419)
++.|+++|.+.... .. + +...++..+..+|+|+|.++||||||++|+++|+++|++|++|+|.|
T Consensus 765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T- 843 (884)
T PRK05007 765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITT- 843 (884)
T ss_pred HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEec-
Confidence 99999998665310 00 0 01234567789999999999999999999999999999999999997
Q ss_pred cCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHcc
Q 014754 145 PDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGE 181 (419)
Q Consensus 145 ~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~ 181 (419)
.|+++.|+|||++.+|..+++++.++|+++|..+|..
T Consensus 844 ~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 844 IGERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred cCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 6999999999999988877788889999999999854
No 8
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=1.5e-24 Score=238.39 Aligned_cols=172 Identities=23% Similarity=0.264 Sum_probs=144.1
Q ss_pred CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcc---cHHHH
Q 014754 5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSII---RWTNL 79 (419)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~---~~~~l 79 (419)
.+|.|. ..+++..++++|+|+++||||||++||++|+.+|+||++|+|+| +|. ++|+|+|++++|.++ +++.|
T Consensus 663 ~~~~V~-i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~-alD~F~V~d~~g~~~~~~~~~~l 740 (854)
T PRK01759 663 GDLLVK-ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGY-VLDSFIVTELNGKLLEFDRRRQL 740 (854)
T ss_pred CCCEEE-EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCE-EEEEEEEeCCCCCCCCHHHHHHH
Confidence 345665 45567789999999999999999999999999999999999987 666 589999999988763 67788
Q ss_pred HHHHHhhCCCCCcc---c-ccc----------cCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec
Q 014754 80 KNRLMLECPSCSVS---F-YFN----------QLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP 145 (419)
Q Consensus 80 ~~~Le~~L~~~~~~---~-~~~----------~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~ 145 (419)
++.|+++|.+.... . .++ ...++..+..+|+|+|.++||||||++|+++|+++|++|+.|+|.| .
T Consensus 741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T-~ 819 (854)
T PRK01759 741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT-I 819 (854)
T ss_pred HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcc-c
Confidence 99999998765421 1 001 1234567788999999999999999999999999999999999986 6
Q ss_pred CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 146 DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 146 ~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
|+++.|+|||++.+|..++++..++|+++|.++|
T Consensus 820 gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 820 GEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 9999999999999887666555599999998876
No 9
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=1.7e-24 Score=238.63 Aligned_cols=175 Identities=22% Similarity=0.266 Sum_probs=144.7
Q ss_pred CCceEEEEecCCC---CCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCc-----c
Q 014754 5 NDDVVLIQKGKRP---GEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSI-----I 74 (419)
Q Consensus 5 ~~~~v~~~~~~~~---~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~-----~ 74 (419)
++|++++ ..++. .++++|+||++||||||+++|++|+.+|+||++|+|+| ||+ ++|+|+|++++|.+ .
T Consensus 687 ~~~~v~~-~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~-alD~F~V~d~~g~~~~~~~~ 764 (895)
T PRK00275 687 GGPLVLI-KETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQF-TLDTYIVLDDDGEPIGDNPA 764 (895)
T ss_pred CCCeEEE-EecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCe-EEEEEEEeCCCCCCccchHH
Confidence 4677774 33343 58999999999999999999999999999999999986 777 58999999998875 2
Q ss_pred cHHHHHHHHHhhCCCCCc--c-c-cc--cc----------CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEE
Q 014754 75 RWTNLKNRLMLECPSCSV--S-F-YF--NQ----------LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQR 138 (419)
Q Consensus 75 ~~~~l~~~Le~~L~~~~~--~-~-~~--~~----------~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~ 138 (419)
+|++|++.|+++|.+... . . .+ .. ...+..+..+|+|+|+++||||||++|+++|+.+|+||++
T Consensus 765 r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~ 844 (895)
T PRK00275 765 RIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQN 844 (895)
T ss_pred HHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEE
Confidence 688899999999876542 1 0 00 11 1123455689999999999999999999999999999999
Q ss_pred EEEEeecCCeEEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHccc
Q 014754 139 VKVTTTPDGRVLDLFFITDNRELLH-TKKRQDETCEQLHAVLGES 182 (419)
Q Consensus 139 a~i~T~~~~~~~d~F~V~~~~g~~~-~~~~~~~l~~~L~~~l~~~ 182 (419)
|+|+|+ |++++|+|||++.+|..+ +++++++|+++|.++|.+.
T Consensus 845 AkI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 845 AKIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred eEEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999987 999999999999887654 5578999999999999654
No 10
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=3.6e-24 Score=238.02 Aligned_cols=187 Identities=25% Similarity=0.358 Sum_probs=156.7
Q ss_pred CCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHccc
Q 014754 104 TCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELL-HTKKRQDETCEQLHAVLGES 182 (419)
Q Consensus 104 ~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~-~~~~~~~~l~~~L~~~l~~~ 182 (419)
...+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++++|.. .+++++++|++.|..++.+.
T Consensus 728 ~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 807 (931)
T PRK05092 728 PARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGE 807 (931)
T ss_pred CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 34478999999999999999999999999999999999999999999999999988764 46689999999999999654
Q ss_pred ccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchH
Q 014754 183 CISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGL 262 (419)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGL 262 (419)
. . +. . .+.++ ..+..+...+..+|.|.|+|+.+..+|+|+|.+.|||||
T Consensus 808 ~-~----~~--~--------~~~~r----------------~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGL 856 (931)
T PRK05092 808 V-R----LP--E--------ALAKR----------------TKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGL 856 (931)
T ss_pred C-C----Cc--c--------ccccc----------------cCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcH
Confidence 2 1 00 0 01000 000001113456899999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 263 LYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 263 L~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
|++|+++|+++|+||.+|+|.| .|+++.|+|++ +.+|.++.+++.++.|+++|.+.+..
T Consensus 857 l~~I~~~l~~~gl~I~~A~I~T--~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 857 LYDLTRALSDLNLNIASAHIAT--YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred HHHHHHHHHHCCceEEEEEEEE--cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999995 79999999999 78899999988899999999999865
No 11
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=3.6e-24 Score=235.18 Aligned_cols=181 Identities=20% Similarity=0.234 Sum_probs=150.5
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccccc
Q 014754 105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCI 184 (419)
Q Consensus 105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~ 184 (419)
..+.+.|.|+++||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.++.|...+++++++|++.|.++|.++.
T Consensus 675 ~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~- 753 (856)
T PRK03059 675 AGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQA- 753 (856)
T ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCCC-
Confidence 4578999999999999999999999999999999999999999999999999988775566899999999999997652
Q ss_pred ccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHH
Q 014754 185 SCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLY 264 (419)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~ 264 (419)
. +. . ...++ .+ .+...+..++.|.|+++.+.++|+|+|.++||||||+
T Consensus 754 ~----~~--~--------~~~~~-----------------~~-~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa 801 (856)
T PRK03059 754 P----LP--E--------PSKGR-----------------LS-RQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLY 801 (856)
T ss_pred C----cc--h--------hhccc-----------------cc-ccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHH
Confidence 0 00 0 01000 00 0111345688999999999999999999999999999
Q ss_pred HHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754 265 DIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML 322 (419)
Q Consensus 265 ~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~ 322 (419)
+|+.+|+.+|+||..|+|.| .|+++.|+|+|. +.++.+++++++|+++|.+++.
T Consensus 802 ~Ia~~L~~~~l~I~~AkI~T--~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 802 AIARVLAEHRVSVHTAKINT--LGERVEDTFLID--GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999996 599999999993 3445677889999999987663
No 12
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.1e-23 Score=231.43 Aligned_cols=171 Identities=22% Similarity=0.255 Sum_probs=141.0
Q ss_pred CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCc---ccHHHH
Q 014754 5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSI---IRWTNL 79 (419)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~---~~~~~l 79 (419)
++|+++ ...++..++++|+|+++||||||++||++|+.+|+||++|+|+| ||.+ +|+|+|.+++|.. .+|++|
T Consensus 664 ~~~~v~-~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~-ld~f~V~~~~~~~~~~~~~~~i 741 (856)
T PRK03059 664 DTPIVR-ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYA-LDTFQVLDPEEDVHYRDIINLV 741 (856)
T ss_pred CCCeEE-EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeE-EEEEEEeCCCCCCChHHHHHHH
Confidence 457777 45557779999999999999999999999999999999999985 8884 8999999987752 378999
Q ss_pred HHHHHhhCCCCCc--c-cc---cccC----------CCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 014754 80 KNRLMLECPSCSV--S-FY---FNQL----------STRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTT 143 (419)
Q Consensus 80 ~~~Le~~L~~~~~--~-~~---~~~~----------~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T 143 (419)
++.|+++|.+... . .. +++. ..+..+.+.|.|+|+++||||||++||++|+.+|+||++|+|+|
T Consensus 742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T 821 (856)
T PRK03059 742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821 (856)
T ss_pred HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence 9999999976432 1 10 1111 12244568999999999999999999999999999999999998
Q ss_pred ecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754 144 TPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 144 ~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~ 180 (419)
. ||+++|+|||.+.. ..+++++++|++.|.++|+
T Consensus 822 ~-~~~v~DvF~V~~~~--~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 822 L-GERVEDTFLIDGSG--LSDNRLQIQLETELLDALA 855 (856)
T ss_pred c-CCEEEEEEEEcCCC--CCCHHHHHHHHHHHHHHhc
Confidence 6 99999999996433 3467889999999998873
No 13
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.3e-24 Score=220.88 Aligned_cols=179 Identities=22% Similarity=0.271 Sum_probs=149.7
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccccccc
Q 014754 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISC 186 (419)
Q Consensus 107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~ 186 (419)
..+.|.|+++|+|.||+.+++.+...|.||++|+|+|+.+|+++|+|+|.+++|..+++.+...++..|.+++....
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~--- 759 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGK--- 759 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcCC---
Confidence 67999999999999999999999999999999999999999999999999999988888888888888888885442
Q ss_pred ccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHHHH
Q 014754 187 ELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDI 266 (419)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~~i 266 (419)
. .|.. ++ ..++ +...+.++|+|.|.|..+..+|+|+|.+.||||||+++
T Consensus 760 ---~-~~~~---~~--r~~r----------------------~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v 808 (867)
T COG2844 760 ---A-QPPR---RR--RIPR----------------------KLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAAL 808 (867)
T ss_pred ---C-CCcc---cc--ccCc----------------------ccceeccCCceeeccccCCCceEEEEEeCCcccHHHHH
Confidence 0 0100 00 1111 11234578999999999999999999999999999999
Q ss_pred HHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754 267 MRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEML 322 (419)
Q Consensus 267 ~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~ 322 (419)
+++|.+++++|++|+|+ |.|++++|+||+ +..|.+++ ++....+.+.|.+.+.
T Consensus 809 ~~v~~dl~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~ 862 (867)
T COG2844 809 AGVFADLGLSLHSAKIT--TFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALL 862 (867)
T ss_pred HHHHHhcccceeeeeec--cccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence 99999999999999999 589999999999 78899986 4555666666665543
No 14
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.6e-23 Score=228.00 Aligned_cols=176 Identities=20% Similarity=0.278 Sum_probs=143.0
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHcccccc
Q 014754 106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCIS 185 (419)
Q Consensus 106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~ 185 (419)
.+.+.|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.++.|..+ .++++++.|.++|.++. .
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~-~ 671 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPP---DAALLRQDLRRALDGDL-D 671 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcc---hHHHHHHHHHHHHcCCC-c
Confidence 57899999999999999999999999999999999998 8999999999999887643 35789999999997642 0
Q ss_pred cccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHHH
Q 014754 186 CELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYD 265 (419)
Q Consensus 186 ~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~~ 265 (419)
. ..++.+. ++.....+...+..++.|.++|+.+.++|+|+|.|.||||||++
T Consensus 672 ~------------------~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~ 723 (774)
T PRK03381 672 V------------------LARLAAR----------EAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLAR 723 (774)
T ss_pred h------------------hhhhhcc----------cccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHH
Confidence 0 0000000 00000001113456889999999999999999999999999999
Q ss_pred HHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHH
Q 014754 266 IMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLK 318 (419)
Q Consensus 266 i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~ 318 (419)
|+++|+++|+||.+|+|.| .|+++.|+||| +.+|.+++++ ++.|+++|.
T Consensus 724 Ia~~L~~~~lnI~~AkI~T--~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 724 LARALERAGVDVRWARVAT--LGADVVDVFYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred HHHHHHHCCCeEEEEEEee--cCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence 9999999999999999995 69999999999 7889999965 788888764
No 15
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=228.94 Aligned_cols=164 Identities=17% Similarity=0.175 Sum_probs=134.7
Q ss_pred ceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 7 DVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 7 ~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
+++. ...++ .+.++|+|+++||||||++||++|+.+||||++|+|++ ||+ ++|+|+|.+++|.+..|+++++.|++
T Consensus 588 ~~v~-~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~-~ld~F~V~~~~~~~~~~~~l~~~L~~ 664 (774)
T PRK03381 588 VHVE-IAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGV-AVLEFVVSPRFGSPPDAALLRQDLRR 664 (774)
T ss_pred CEEE-EeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCE-EEEEEEEECCCCCcchHHHHHHHHHH
Confidence 4443 34445 78999999999999999999999999999999999998 776 58999999998876678999999999
Q ss_pred hCCCCCc---cc-cc------ccC----------CCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec
Q 014754 86 ECPSCSV---SF-YF------NQL----------STRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP 145 (419)
Q Consensus 86 ~L~~~~~---~~-~~------~~~----------~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~ 145 (419)
+|.+... .. .+ .+. ..+..+..+++|+|+++||||||++|+++|+.+|+||++|+|.|.
T Consensus 665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~- 743 (774)
T PRK03381 665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL- 743 (774)
T ss_pred HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-
Confidence 9977532 10 01 110 112444568999999999999999999999999999999999986
Q ss_pred CCeEEEEEEEEcCCCCCCCHHHHHHHHHHH
Q 014754 146 DGRVLDLFFITDNRELLHTKKRQDETCEQL 175 (419)
Q Consensus 146 ~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L 175 (419)
|++++|+|||++.+|..++++ .++|+++|
T Consensus 744 g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L 772 (774)
T PRK03381 744 GADVVDVFYVTGAAGGPLADA-RAAVEQAV 772 (774)
T ss_pred CCeEEEEEEEECCCCCcCchH-HHHHHHHh
Confidence 999999999999988766554 67777765
No 16
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.89 E-value=1.2e-21 Score=217.91 Aligned_cols=175 Identities=22% Similarity=0.245 Sum_probs=143.9
Q ss_pred CceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCc----ccHHHH
Q 014754 6 DDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSI----IRWTNL 79 (419)
Q Consensus 6 ~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~----~~~~~l 79 (419)
++.++..++++..++++|+|+++||||||++||++|+.+|+||++|+|+| +|+ ++|+|+|++++|.+ .+++.|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~-alD~F~V~~~~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGR-ALDTFWIQDAFGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCe-EEEEEEEECCCCCCCCCHHHHHHH
Confidence 44555555567778999999999999999999999999999999999987 676 58999999988754 368889
Q ss_pred HHHHHhhCCCCCc--c-c-cc--c--cC----------CCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 014754 80 KNRLMLECPSCSV--S-F-YF--N--QL----------STRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 80 ~~~Le~~L~~~~~--~-~-~~--~--~~----------~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
++.|+.++.+... . . .+ . +. .++..+..+|.|+|+++||||||++|+++|+++|+||++|+|
T Consensus 797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I 876 (931)
T PRK05092 797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI 876 (931)
T ss_pred HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence 9999998855421 0 1 01 1 11 123456678999999999999999999999999999999999
Q ss_pred EeecCCeEEEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHccc
Q 014754 142 TTTPDGRVLDLFFITDNRELL-HTKKRQDETCEQLHAVLGES 182 (419)
Q Consensus 142 ~T~~~~~~~d~F~V~~~~g~~-~~~~~~~~l~~~L~~~l~~~ 182 (419)
.| .++++.|+|||++.+|.. .+++++++|++.|.++|.+.
T Consensus 877 ~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 877 AT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred EE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 97 589999999999988764 56678899999999999654
No 17
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.89 E-value=1e-21 Score=217.00 Aligned_cols=172 Identities=24% Similarity=0.292 Sum_probs=143.4
Q ss_pred CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee-e-cCcEEEEEEEEecCCCCcc----cHHH
Q 014754 5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIS-T-DGIWCYIVLWVVPHSSSII----RWTN 78 (419)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~-t-dG~~~~d~f~V~~~~g~~~----~~~~ 78 (419)
++|.+.+... ...++++|+|+++||||||++|+++|+.+|+||.+|+|+ + +|+ ++|+|+|++++|.++ ++++
T Consensus 654 ~~~~v~~~~~-~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~-~lD~F~V~~~~g~~~~~~~~~~~ 731 (850)
T TIGR01693 654 GGPLALIDGT-RPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGV-ALDTFVVQDLFGSPPAAERVFQE 731 (850)
T ss_pred CCCEEEEecc-CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCE-EEEEEEEECCCCCCCCcHHHHHH
Confidence 4577766654 347899999999999999999999999999999999999 4 666 589999999988652 5888
Q ss_pred HHHHHHhhCCCCCc---c--cc---ccc----------CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEE
Q 014754 79 LKNRLMLECPSCSV---S--FY---FNQ----------LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVK 140 (419)
Q Consensus 79 l~~~Le~~L~~~~~---~--~~---~~~----------~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~ 140 (419)
|++.|.++|.+... . .+ +++ ..++..+..+|.|+|.++|||||+++|+++|+++|+||++|+
T Consensus 732 i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~ 811 (850)
T TIGR01693 732 LLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAK 811 (850)
T ss_pred HHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEE
Confidence 99999999866432 0 10 011 123466778999999999999999999999999999999999
Q ss_pred EEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 141 VTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 141 i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
|.| .++++.|+|||++..|.+.++++++.|+++|.++|
T Consensus 812 i~t-~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 812 ITT-FGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred EEe-cCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 997 57999999999998887766688899999998876
No 18
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.9e-21 Score=202.33 Aligned_cols=173 Identities=25% Similarity=0.283 Sum_probs=134.2
Q ss_pred CCceEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcc---cHHHH
Q 014754 5 NDDVVLIQKGKRPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSII---RWTNL 79 (419)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~---~~~~l 79 (419)
++|+|..+.. ...++++|+||+||+|.||+.+|+.++..|+||++|+|+| ||+. +|+|+|++++|.++ +...+
T Consensus 670 ~~~Lv~~~~r-~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~a-lDtfiv~~~~g~~~~~dr~~~~ 747 (867)
T COG2844 670 GKPLVLISVR-PHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYA-LDTFIVLEPDGFPVEEDRRAAL 747 (867)
T ss_pred cCcceeeeec-ccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCce-eeeEEEecCCCCccchhHHHHH
Confidence 4567765433 4448899999999999999999999999999999999986 9995 89999999998663 34444
Q ss_pred HHHHHhhCCCCCcc-----cccccC----------CCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754 80 KNRLMLECPSCSVS-----FYFNQL----------STRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT 144 (419)
Q Consensus 80 ~~~Le~~L~~~~~~-----~~~~~~----------~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~ 144 (419)
+..+.+++.+.... ..+++. ..+..+.+.++++|.+.||||||++++++|+++|++|++|+|.|
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT- 826 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT- 826 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc-
Confidence 45555555332211 001111 12244557999999999999999999999999999999999986
Q ss_pred cCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754 145 PDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 145 ~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~ 180 (419)
.|+++.|+|||++..|..++++..+.+.+.|.+.+.
T Consensus 827 ~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~ 862 (867)
T COG2844 827 FGERVEDVFIVTDADGQALNAELRQSLLQRLLEALL 862 (867)
T ss_pred ccccceeEEEEeccccccCCHHHHHHHHHHHHHHhc
Confidence 699999999999999876677666666666666553
No 19
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=1.9e-19 Score=138.51 Aligned_cols=73 Identities=18% Similarity=0.373 Sum_probs=69.8
Q ss_pred eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
+|+|+|.|+|||||||+|+++|+++|++|++|+|+ |.|+++.|+||+ +.+|.|+.+++++++|+++|.+++++
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999 589999999999 88999999999999999999999876
No 20
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.77 E-value=2.9e-18 Score=131.91 Aligned_cols=75 Identities=69% Similarity=1.224 Sum_probs=69.7
Q ss_pred eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCC
Q 014754 250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHP 324 (419)
Q Consensus 250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~ 324 (419)
|+|+|.|+|||||||+|+++|+++|++|++|+|++.|.|+++.|+||++.+|++++|+++++.|+++|.+++.+|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999999944489999999999888999999999999999999988764
No 21
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.77 E-value=1.6e-17 Score=151.11 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=114.3
Q ss_pred CCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC-C
Q 014754 246 SPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH-P 324 (419)
Q Consensus 246 ~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~-~ 324 (419)
..++.+|++.|+|||||++.++++|+++||||.+++.+. .|+.+.-++++ .|.+ ...+.|+..|...-.+ .
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~--lgg~Fa~i~lv--s~~~----~~~~~le~~L~~l~~~~~ 76 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAM--LGEEFTFIMLL--SGSW----NAITLIESTLPLKGAELD 76 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHh--hCCceEEEEEE--eCCh----hHHHHHHHHHHhhhhhcC
Confidence 457899999999999999999999999999999999996 57766644444 3433 4678888887544433 4
Q ss_pred ceEEEecCCC--CcccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeec--cCceeeEEEEEEEcCCCCCCc
Q 014754 325 LRVIIANRGP--DTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYST--SEREWEIYRFLLDENCKFQLS 400 (419)
Q Consensus 325 ~~v~i~~~~~--~~~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~--~~~~~~~~~f~~~d~~g~~~~ 400 (419)
+.+.+..... ......++.+++.|.||||||++||++|+++|+||.++++.+... .+..-....|.+.-|.|..+.
T Consensus 77 L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~ 156 (190)
T PRK11589 77 LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAA 156 (190)
T ss_pred eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHH
Confidence 5555432111 122223589999999999999999999999999999999987542 222124555666557777665
Q ss_pred chHHHHHHHHHHHHHH
Q 014754 401 SMVAREQIVDRVRRAL 416 (419)
Q Consensus 401 ~~~~~~~~~~~~~~~l 416 (419)
.-+.-.+.++.+|
T Consensus 157 ---~L~~~l~~l~~eL 169 (190)
T PRK11589 157 ---NIEQAFKALCTEL 169 (190)
T ss_pred ---HHHHHHHHHHHHh
Confidence 3444455555554
No 22
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=6e-18 Score=129.25 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=64.4
Q ss_pred eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHH
Q 014754 249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLK 318 (419)
Q Consensus 249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~ 318 (419)
+|+|+|.++||||||++|+++|+++|++|+.|+|+ |.|+++.|+||+ +.+|+|+.|+++++.|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999 589999999999 889999999999999998874
No 23
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.68 E-value=4.5e-16 Score=141.63 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=104.0
Q ss_pred CCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCC-CCcc-c
Q 014754 17 PGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPS-CSVS-F 94 (419)
Q Consensus 17 ~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~-~~~~-~ 94 (419)
....+.|+|+|+|||||+++++++|+++||||+++++...|..|.-++.| ++.......++..|...-.. .+.. .
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~~~~~~~le~~L~~l~~~~~L~i~v 81 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGSWNAITLIESTLPLKGAELDLLIVM 81 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCChhHHHHHHHHHHhhhhhcCeEEEE
Confidence 34678999999999999999999999999999999998744445677777 33211334444444332211 1111 1
Q ss_pred ccccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC---C--eEEEEEEEEcCCCCCCCHHHHH
Q 014754 95 YFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD---G--RVLDLFFITDNRELLHTKKRQD 169 (419)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~---~--~~~d~F~V~~~~g~~~~~~~~~ 169 (419)
.+.........+..+.++|++.|||||++++|++|+++|+||.+.+..|... + ...-.|.+.-+.+ ...+
T Consensus 82 ~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-----~~~~ 156 (190)
T PRK11589 82 KRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-----QDAA 156 (190)
T ss_pred EeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-----CCHH
Confidence 1211110112223689999999999999999999999999999999887642 1 2333444443332 2366
Q ss_pred HHHHHHHHHHc
Q 014754 170 ETCEQLHAVLG 180 (419)
Q Consensus 170 ~l~~~L~~~l~ 180 (419)
.|+++|++..+
T Consensus 157 ~L~~~l~~l~~ 167 (190)
T PRK11589 157 NIEQAFKALCT 167 (190)
T ss_pred HHHHHHHHHHH
Confidence 78888888653
No 24
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.68 E-value=4.7e-16 Score=119.70 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=66.4
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCC-CCHHHHHHHHHHHHHHHc
Q 014754 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELL-HTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~-~~~~~~~~l~~~L~~~l~ 180 (419)
+|+|+|.++||||||++|+++|+++|++|.+|+|.| .|+++.|+|||++.+|.. .++++.++|++.|.+++.
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T-~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT-DGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee-cCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999997 699999999999998864 567888999999999885
No 25
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.66 E-value=9.7e-16 Score=117.11 Aligned_cols=68 Identities=24% Similarity=0.347 Sum_probs=61.4
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCC-CCHHHHHHHHHHHH
Q 014754 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELL-HTKKRQDETCEQLH 176 (419)
Q Consensus 108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~-~~~~~~~~l~~~L~ 176 (419)
+|+|+|.++||||||++|+++|+++|++|+.|+|.| .|+++.|+|||++.+|.. .+++++++|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT-~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS-DGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee-cCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 488999999999999999999999999999999986 699999999999998765 46788888888775
No 26
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=1.5e-15 Score=118.36 Aligned_cols=72 Identities=81% Similarity=1.214 Sum_probs=66.6
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHcc
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGE 181 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~ 181 (419)
.++|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|||.++.+...+++++++++++|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 689999999999999999999999999999999888999999999999877756778999999999999854
No 27
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.64 E-value=1.7e-15 Score=132.01 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=112.5
Q ss_pred CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCce
Q 014754 247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLR 326 (419)
Q Consensus 247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~ 326 (419)
.+|.+|++.|.||||++..++++..++||||.++|+++ .|+.+. |++...|.| +...+|+..| ..+.....
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~--~g~~~a--~i~lisgs~----dav~~le~~l-~~l~~~~~ 73 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAM--LGEEFA--GIMLISGSW----DAVTLLEATL-PLLGAELD 73 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHH--hhccee--EEEEEeeCH----HHHHHHHHHh-hcccccCC
Confidence 46799999999999999999999999999999999995 687666 666777765 6789999987 55555444
Q ss_pred EE--EecCCCCc--ccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCc
Q 014754 327 VI--IANRGPDT--ELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLS 400 (419)
Q Consensus 327 v~--i~~~~~~~--~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~ 400 (419)
+. +...++.. ....++.++|.+.|||||+.++|++|.++|+||.++++.+...-+. ...-|...-.-+-|++
T Consensus 74 L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s--~~~lfha~it~~lPa~ 149 (176)
T COG2716 74 LLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGS--SAPLFHAQITARLPAN 149 (176)
T ss_pred eEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCC--CccceehhhhccCCCc
Confidence 44 43333332 2355789999999999999999999999999999999999777666 5677777443444443
No 28
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.63 E-value=3.3e-15 Score=115.44 Aligned_cols=71 Identities=28% Similarity=0.375 Sum_probs=64.4
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLH-TKKRQDETCEQLHAVL 179 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~-~~~~~~~l~~~L~~~l 179 (419)
+.|+|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|||+++.+... +++++++|++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 6799999999999999999999999999999999988899999999999877654 5788999999998764
No 29
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.61 E-value=3.5e-15 Score=130.04 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=117.1
Q ss_pred CCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcc----
Q 014754 18 GEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVS---- 93 (419)
Q Consensus 18 ~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~---- 93 (419)
..++.|+++++|+||+...+|+..+++||||+++++..-|..|..+..| +| .|+.+ ..||+.|+...+.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li---sg---s~dav-~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI---SG---SWDAV-TLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE---ee---CHHHH-HHHHHHhhcccccCCeE
Confidence 3568999999999999999999999999999999999977665566666 56 69999 8899998765431
Q ss_pred --cccccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCe-EEEEEEEEcCCCCCCCHHHHHH
Q 014754 94 --FYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGR-VLDLFFITDNRELLHTKKRQDE 170 (419)
Q Consensus 94 --~~~~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~-~~d~F~V~~~~g~~~~~~~~~~ 170 (419)
+.+......+..+..+.+.|.+.|||||+.++|++|..+|+||.+....|....+ -.-.|...-.- .++..-....
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~-~lPa~~~i~~ 154 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITA-RLPANLSISA 154 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhc-cCCCcCcHHH
Confidence 2222222225567799999999999999999999999999999988887765332 23445554322 2333345678
Q ss_pred HHHHHHHHH
Q 014754 171 TCEQLHAVL 179 (419)
Q Consensus 171 l~~~L~~~l 179 (419)
|+++|++..
T Consensus 155 l~~~f~al~ 163 (176)
T COG2716 155 LRDAFEALC 163 (176)
T ss_pred HHHHHHHHH
Confidence 888888865
No 30
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=6.6e-15 Score=113.34 Aligned_cols=70 Identities=26% Similarity=0.456 Sum_probs=63.3
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE--eecCCeEEEEEEEEcCCC-CCCCHHHHHHHHHHHHHHHc
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT--TTPDGRVLDLFFITDNRE-LLHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~--T~~~~~~~d~F~V~~~~g-~~~~~~~~~~l~~~L~~~l~ 180 (419)
|+|+|.++||||||++|+++|+++|++|+.|+|. | .|+++.|+||| +..| ++.++++.+.|+++|.+++.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T-~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKV-KGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCc-ccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999998 7 59999999999 6655 55678899999999999874
No 31
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=1.6e-14 Score=112.00 Aligned_cols=71 Identities=25% Similarity=0.398 Sum_probs=64.5
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCC-CC-CCCHHHHHHHHHHHHHHHc
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNR-EL-LHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~-g~-~~~~~~~~~l~~~L~~~l~ 180 (419)
|+|+|+++||||||++|+++|+++||||++|+++|. ++++.|+|||++++ +. ..+++++++|++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999975 99999999999986 65 3567889999999999875
No 32
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=2.7e-15 Score=112.39 Aligned_cols=77 Identities=64% Similarity=1.110 Sum_probs=73.0
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHcCC
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW 419 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l~~~ 419 (419)
+++|++|..||.+++|+|-+|+.+|++|++++|.+|..++++|++++|.+.+..+. +++.+.|+.++|+|++.+|||
T Consensus 1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw 77 (77)
T cd04898 1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW 77 (77)
T ss_pred CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999999999999999999999999887555 888999999999999999999
No 33
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.49 E-value=2.4e-13 Score=102.63 Aligned_cols=64 Identities=25% Similarity=0.292 Sum_probs=58.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC 87 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L 87 (419)
.+|+|+++||||||++++++|+.+|+||++|+|++ ||++ +|+|+|.+.+|. ..+.+.+.|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~-LDtF~V~d~~~~--~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLA-LDIFVVTGWKRG--ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeE-EEEEEEecCCcc--chHHHHHHHHHhh
Confidence 58999999999999999999999999999999986 8885 899999999886 6778888888765
No 34
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.47 E-value=4e-13 Score=104.09 Aligned_cols=71 Identities=23% Similarity=0.300 Sum_probs=64.8
Q ss_pred eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecC-CCcCCCHHHHHHHHHHHHHHhc
Q 014754 250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKD-GKKIVDPEKQSAICSRLKMEML 322 (419)
Q Consensus 250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~-g~~~~d~~~~~~l~~~L~~~l~ 322 (419)
|+|+|.++|||||+++|+++|+++|+||.+|++.| .|+.+.|+|++ +.+ |.++.+++++++|++.|.+++.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t--~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT--HNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE--ECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999996 59999999998 766 8888888899999999987764
No 35
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.46 E-value=6e-13 Score=100.45 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=57.7
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
+.|.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|.+.+|. .-+.|+++|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~-----~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG-----ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc-----chHHHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999999998764 2245666666654
No 36
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.46 E-value=7.2e-13 Score=103.16 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=64.4
Q ss_pred EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcCC
Q 014754 251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLHP 324 (419)
Q Consensus 251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~~ 324 (419)
+++|.++|||||+++++.+|+++|++|.+|+|.| |.|+++.|+|++ +.+|. ..+++++++|++.|.+++++.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T-t~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~~ 74 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST-TPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGDS 74 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE-CCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHchh
Confidence 7899999999999999999999999999999997 589999999999 66555 556788899999999988763
No 37
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.41 E-value=1.8e-12 Score=100.11 Aligned_cols=70 Identities=26% Similarity=0.302 Sum_probs=62.6
Q ss_pred eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHH
Q 014754 250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKME 320 (419)
Q Consensus 250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~ 320 (419)
+.|+|.++||||||++++.+|+.+|+||.+|+|.| +.++++.|+|++ +.+|.++.+++++++|++.|...
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T-~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFT-TRDGYALDTFVVLDPDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE-eCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999997 457899999988 77788887788889999888654
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.32 E-value=1.8e-11 Score=94.24 Aligned_cols=67 Identities=28% Similarity=0.413 Sum_probs=58.1
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLH 176 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~ 176 (419)
+.|+|.++||||+|++|+++|+++|+||++|.++|. ++++.|+|+|.++++...++++++++++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTDANGNPVDPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-CCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence 579999999999999999999999999999999875 6799999999998876556667777766654
No 39
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.25 E-value=7.4e-11 Score=89.87 Aligned_cols=70 Identities=40% Similarity=0.551 Sum_probs=62.4
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
|.|.|.++|+||+|++|+++|+++|+||.++++.|. ++++.|+|++.+..+...+.+++++|+++|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~-~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATL-GERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec-CCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999875 5699999999998876667789999999988753
No 40
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.22 E-value=4.7e-11 Score=86.25 Aligned_cols=68 Identities=74% Similarity=1.432 Sum_probs=61.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCC-cccHHHHHHHHHhhCC
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSS-IIRWTNLKNRLMLECP 88 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~-~~~~~~l~~~Le~~L~ 88 (419)
++|+|.+||+.||-.++++++.+.|++|..+.++|||.|++.+|+|...... +++|+.++++|++++|
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~CP 69 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSACP 69 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhcCC
Confidence 4799999999999999999999999999999999999999999999876533 3799999999998864
No 41
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.19 E-value=3.6e-10 Score=121.23 Aligned_cols=145 Identities=10% Similarity=0.049 Sum_probs=115.8
Q ss_pred eEEEEEEe-cCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHccccccc
Q 014754 108 VYLLKLFC-LDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISC 186 (419)
Q Consensus 108 ~~~i~v~~-~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~ 186 (419)
...++|.. +|++|+|.+++++|+.+|++|++|++.+ +|.+...|.|.+..|..+++. .+++.+...+.+..+
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~-- 618 (693)
T PRK00227 546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGPQDFDPQ---EFLQAYKSGVYSELP-- 618 (693)
T ss_pred CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCCCCCChH---HHHHHHHHhhcCCCC--
Confidence 45788888 9999999999999999999999999985 788889999999888877764 677888888765531
Q ss_pred ccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEEcCcchHHHHH
Q 014754 187 ELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHCVDHKGLLYDI 266 (419)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~~DrpGLL~~i 266 (419)
.. ...||.+.+.. ++++|++.||||+|+.+
T Consensus 619 -----------------~~---------------------------~~~~~~~~~~~------~~~e~r~~dr~g~l~~~ 648 (693)
T PRK00227 619 -----------------DP---------------------------APGITATFWHG------NILEVRTEDRRGALGAL 648 (693)
T ss_pred -----------------cc---------------------------cCCCCceEeeC------cEEEEEeCccccHHHHH
Confidence 00 01245666654 79999999999999999
Q ss_pred HHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754 267 MRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML 322 (419)
Q Consensus 267 ~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~ 322 (419)
+++|. +|.+|+++ |.|..+.|.|++... .....++.++..++.
T Consensus 649 ~~~l~----~~~~~~~~--~~g~~~~~~~~~~~~-------~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 649 LGVLP----DLLWITAS--TPGATMIVQAALKPG-------FDRATVERDVTRVLA 691 (693)
T ss_pred HHHhh----hhhhHhhc--CCCcceEEEEEecCc-------ccHHHHHHHHHHHHh
Confidence 99999 88999999 589999999998621 124667666665543
No 42
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.10 E-value=6.6e-10 Score=85.52 Aligned_cols=54 Identities=24% Similarity=0.419 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcc
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSII 74 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~ 74 (419)
+++|+|+++|+||+|++|+++|+++|+||++|++++ +|+ .+|+|+|+++++.+.
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~-~~d~f~v~~~~~~~~ 55 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDM-AVNVFYVTDANGNPV 55 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCe-EEEEEEEECCCCCcC
Confidence 468999999999999999999999999999999987 555 589999999887653
No 43
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.08 E-value=1.4e-09 Score=116.84 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=114.7
Q ss_pred EEEEEEc-CCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc--cc
Q 014754 21 HVITVNC-PDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY--FN 97 (419)
Q Consensus 21 ~~v~V~~-~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~--~~ 97 (419)
-.++|.. +|++|++.+++++|+.++++|.+|++.++|.+ ...|.|....|.+.+...+++.+...+.+...... ++
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVANGPW-SAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEecCCce-EEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 5778888 99999999999999999999999999998886 79999999888777888888999988876553111 11
Q ss_pred cCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 98 QLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 98 ~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
.... ..++++|.+.||+|+|+.++++|. .|..|++.| .|..++|+||+.+.. ...+++..+..
T Consensus 626 ~~~~-----~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~-~g~~~~~~~~~~~~~-------~r~~~~~~~~~ 688 (693)
T PRK00227 626 ATFW-----HGNILEVRTEDRRGALGALLGVLP----DLLWITAST-PGATMIVQAALKPGF-------DRATVERDVTR 688 (693)
T ss_pred ceEe-----eCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcC-CCcceEEEEEecCcc-------cHHHHHHHHHH
Confidence 1111 127999999999999999999999 899999986 689999999998321 24567777777
Q ss_pred HHc
Q 014754 178 VLG 180 (419)
Q Consensus 178 ~l~ 180 (419)
+|.
T Consensus 689 ~~~ 691 (693)
T PRK00227 689 VLA 691 (693)
T ss_pred HHh
Confidence 663
No 44
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.01 E-value=3.3e-09 Score=80.63 Aligned_cols=68 Identities=32% Similarity=0.572 Sum_probs=59.1
Q ss_pred eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHH
Q 014754 250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKME 320 (419)
Q Consensus 250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~ 320 (419)
|+++|.+.||||+|++|+++|.++|++|.++++.+ .++.+.|+|++ +.+|.+. +.+.+++|+++|...
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~--~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIAT--LGERAEDVFYVTDADGQPL-DPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEe--cCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999985 56699999988 6777774 467888899888654
No 45
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.97 E-value=7e-09 Score=78.54 Aligned_cols=68 Identities=34% Similarity=0.568 Sum_probs=59.8
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAV 178 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~ 178 (419)
.|.|.++|+||+|++++++|+++|++|.++.+.+.. ++..++|++..+++...++++++.|+++|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG-ERALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC-CEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 688999999999999999999999999999999764 49999999998876556667889999988765
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.67 E-value=2.4e-07 Score=71.96 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=54.2
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~ 180 (419)
+.+|++.|+||||+++.++++|+++|+||.+.+..+ .++++.-.+.|.-+ ++..++|+++|.++..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~-~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAV-LGGRFTLIMLVSIP------EDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEE-ETTEEEEEEEEEES------HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEE-EcCeEEEEEEEEeC------cccHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999986 57888888888754 4567888888888753
No 47
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.66 E-value=2.7e-07 Score=69.71 Aligned_cols=68 Identities=35% Similarity=0.575 Sum_probs=56.2
Q ss_pred eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHH
Q 014754 250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKME 320 (419)
Q Consensus 250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~ 320 (419)
+.|.|.++|+||+|++++.+|.++|++|.++++.+ .+++..++|.+ ..++... +++++++|++.|...
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGERALDVFYVTDSDGRPL-DPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence 46889999999999999999999999999999985 45588899988 5555553 457888888887543
No 48
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.66 E-value=1e-07 Score=74.01 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=48.4
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhh
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLE 86 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~ 86 (419)
...|+|+|+||||+++.++++|+++||||.+++..+.|..|..++.|.-+.. ..+++++.|++.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~---~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPED---SLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHH---HHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcc---cHHHHHHHHHHH
Confidence 4689999999999999999999999999999999984444567788865532 566676676664
No 49
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.60 E-value=3.1e-07 Score=71.51 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=48.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC 87 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L 87 (419)
+.|++.||||||+++++++.|+++|+||.+++.+. +|. |.-.+.+..+. ...+.+++.|+...
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~-F~m~~~~~~~~---~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTE-FALTMLVEGSW---DAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCE-EEEEEEEEecc---ccHHHHHHHHHHHH
Confidence 67899999999999999999999999999999887 555 44555554332 25677777777643
No 50
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.42 E-value=1.3e-06 Score=67.57 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=51.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754 22 VITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC 87 (419)
Q Consensus 22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L 87 (419)
.|+|+|+||||+.++++++|+++|+||.+.+..+ .|. |.-.|.|.-|.+. +.+.+++.|+..+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~-f~~~~~v~~p~~~--~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGR-LSLGILVQIPDSA--DSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCe-eEEEEEEEcCCCC--CHHHHHHHHHHHH
Confidence 3799999999999999999999999999998665 666 4577888766542 5777878887765
No 51
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.42 E-value=8.4e-07 Score=64.44 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=58.2
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAV 178 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~ 178 (419)
++|+|.+||+.||-.++++++.++|++|..+.+.| .|.+..-+|+|...... -+-+|+.|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~~--~~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPPS--IKVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCCC--CcccHHHHHHHHHhc
Confidence 47999999999999999999999999999999986 68899999999875433 245789999998875
No 52
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.41 E-value=3.6e-06 Score=62.63 Aligned_cols=63 Identities=25% Similarity=0.542 Sum_probs=47.4
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCC-eEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG-RVLDLFFITDNRELLHTKKRQDETCEQLHAV 178 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~-~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~ 178 (419)
|.|.|.++||||+|++++++|+++|+||..+.+.+..++ .....+...+ ....+++.+.|+++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHcc
Confidence 578999999999999999999999999999999986552 3333333332 33455666666664
No 53
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.39 E-value=2.2e-06 Score=66.76 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=50.6
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
++|++.|+||||++++|+++|+++|+||.+.+.++ .++++.-.+.+..+ ....+.|++.|....
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~~------~~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEGS------WDAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEec------cccHHHHHHHHHHHH
Confidence 68999999999999999999999999999999987 56777555555432 123567777777754
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.37 E-value=1.9e-06 Score=66.62 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=51.9
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~ 180 (419)
+|+|.|+||||++++++++|+++|+||.+.+..+. ++++.-.|.+.-+.+ ...+.|++.|+...+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~-~~~f~~~~~v~~p~~-----~~~~~l~~~l~~l~~ 65 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI-HGRLSLGILVQIPDS-----ADSEALLKDLLFKAH 65 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE-cCeeEEEEEEEcCCC-----CCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999987654 677777787765433 235678888887653
No 55
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.34 E-value=3.9e-06 Score=62.44 Aligned_cols=62 Identities=24% Similarity=0.287 Sum_probs=47.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCc--EEEEEEEEecCCCCcccHHHHHHHHHhh
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGI--WCYIVLWVVPHSSSIIRWTNLKNRLMLE 86 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~--~~~d~f~V~~~~g~~~~~~~l~~~Le~~ 86 (419)
+.|.|.++||||++++++++|+++|+||..+..++++. +.+.++.+.+.. ..+.+.+.|++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEE----DLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGH----GHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCC----CHHHHHHHHHcc
Confidence 47899999999999999999999999999999987332 334455544333 566776777764
No 56
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.18 E-value=1.2e-05 Score=62.70 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=49.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecC------cEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754 22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDG------IWCYIVLWVVPHSSSIIRWTNLKNRLMLEC 87 (419)
Q Consensus 22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG------~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L 87 (419)
.|+|.|+|+||++++|++.|+++|+||.+.+..+++ ..+.-.+.+..|.+ .+..++++.|+...
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~--~~~~~l~~~l~~l~ 70 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG--TDLDALREELEELC 70 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC--CCHHHHHHHHHHHH
Confidence 378999999999999999999999999999988643 22345666655543 25777877777754
No 57
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.17 E-value=1.5e-05 Score=61.29 Aligned_cols=65 Identities=15% Similarity=0.267 Sum_probs=48.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754 22 VITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC 87 (419)
Q Consensus 22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L 87 (419)
.|+|.|+||||+++++++.|+++|+||.+.+.++ .+..|.-.+.+..+.+ ....+.+++.|+...
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF-DLSREALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHH
Confidence 3789999999999999999999999999999884 3332334455544432 125777877777654
No 58
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.14 E-value=9.2e-06 Score=64.81 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC 87 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L 87 (419)
..|++.|+|+||++++++++|+++|+||.+.+.++ .|.+ .-.+.+.-+. .....+.+++.|+...
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f-~~~~~v~~~~-~~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYF-TMIMIVDISE-SNLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCcc-EEEEEEEeCC-CCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999776 5554 4556665543 1125677777777754
No 59
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.11 E-value=0.00011 Score=60.65 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=83.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccccccCCC
Q 014754 22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQLST 101 (419)
Q Consensus 22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~~~~~~ 101 (419)
+|.|+..||||-++..+..|.++|+||..-.|...|.+-+.-+.|.+| +.-.+.|+.+ +.. .+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d~A~~~Lee~--gF~---Vr----- 67 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------DEAHSVLEEA--GFT---VR----- 67 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------HHHHHHHHHC--CcE---EE-----
Confidence 689999999999999999999999999977777677643233344222 2233455553 111 00
Q ss_pred CCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754 102 RPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI 155 (419)
Q Consensus 102 ~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V 155 (419)
..-++-|..+|+||=+++|+.+|.++++|+..+..+++....++-+|-+
T Consensus 68 -----~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ 116 (142)
T COG4747 68 -----ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV 116 (142)
T ss_pred -----eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh
Confidence 2346778899999999999999999999999999998877677665544
No 60
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.10 E-value=2e-05 Score=60.64 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=31.1
Q ss_pred EEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754 344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGR 376 (419)
Q Consensus 344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t 376 (419)
+.+.|+|||||+++||++|+++|+||.+++..+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 678999999999999999999999999999775
No 61
>PRK00194 hypothetical protein; Validated
Probab=98.06 E-value=1.9e-05 Score=63.16 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=49.0
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC 87 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L 87 (419)
.+.|+|.|+|+||++++++++|+++|+||.+.+-.+.+..+.-.+.+.-+. .+...+.+++.|++..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE-SKKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC-CCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999998776343344545554442 1124567766666643
No 62
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.04 E-value=1.7e-05 Score=63.31 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=51.8
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~ 180 (419)
..|++.|+|+||++++++++|+++|+||.+.+..+ .++.+.-.+.+.-+. . ....+.|++.|.....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~-~~~~f~~~~~v~~~~-~---~~~~~~L~~~l~~l~~ 68 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI-MDGYFTMIMIVDISE-S---NLDFAELQEELEELGK 68 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh-hCCccEEEEEEEeCC-C---CCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999986 466666666665332 0 1235678888877653
No 63
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.93 E-value=8e-05 Score=58.08 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=47.5
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-----CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-----GRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-----~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
.|+|.++|+||++++|+++|+++|+||.+.+..+... ++..-.+.+.-+. ....++|++.|+...
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-----~~~~~~l~~~l~~l~ 70 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-----GTDLDALREELEELC 70 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-----CCCHHHHHHHHHHHH
Confidence 3789999999999999999999999999999987531 3343444444332 123567888777754
No 64
>PRK07431 aspartate kinase; Provisional
Probab=97.93 E-value=0.041 Score=59.20 Aligned_cols=268 Identities=16% Similarity=0.144 Sum_probs=149.2
Q ss_pred EEEEE-cCCCCChHHHHHHHHHhCCceEEEEEee--ecCcEEEEEEEEecCCCCcccHHHHHHHHHh---hCCCCCcccc
Q 014754 22 VITVN-CPDKTGLGCDICRIILDFGLYITKGDIS--TDGIWCYIVLWVVPHSSSIIRWTNLKNRLML---ECPSCSVSFY 95 (419)
Q Consensus 22 ~v~V~-~~DrpgL~~~i~~~l~~~~lnI~~A~i~--tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~---~L~~~~~~~~ 95 (419)
.+++. .++.+|+++++...|+++|.||.--.-+ ..+.. --.|.|... +.+...+.|+. .+.. .
T Consensus 272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~-~isf~i~~~-----d~~~~~~~l~~l~~~~~~-~---- 340 (587)
T PRK07431 272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSN-DIAFTVAEN-----ELKKAEAVAEAIAPALGG-A---- 340 (587)
T ss_pred EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCc-cEEEEEeHH-----HHHHHHHHHHHHHHHcCC-C----
Confidence 34443 4889999999999999999999855322 23332 235666332 12222222332 2211 0
Q ss_pred cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHH
Q 014754 96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETC 172 (419)
Q Consensus 96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~ 172 (419)
......+...|.|++. +.+|+++++..+|++.|+||.... ++ +.. -.|.|. ++..++.-
T Consensus 341 -----~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~-Is~vv~--------~~d~~~av 402 (587)
T PRK07431 341 -----EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVK-VSCVID--------AEDGDKAL 402 (587)
T ss_pred -----cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCE-EEEEEc--------HHHHHHHH
Confidence 0012245778999885 799999999999999999997443 32 221 223332 23344555
Q ss_pred HHHHHHHcccccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEE
Q 014754 173 EQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLL 252 (419)
Q Consensus 173 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi 252 (419)
+.|++.+.-+.... .+.+ . + .......-+-|. ...+...|
T Consensus 403 ~~Lh~~f~~~~~~~----------------~~~~----~-----------~-----~~~~~~~v~gIa----~~~~~~~i 442 (587)
T PRK07431 403 RAVCEAFELEDSQI----------------EINP----T-----------A-----SGQDEPEVRGVA----LDRNQAQL 442 (587)
T ss_pred HHHHHHhccCCccc----------------ccCc----c-----------c-----cCCCCCcEEEEE----ccCCEEEE
Confidence 66677663321000 0000 0 0 000000112333 22355566
Q ss_pred EEE-EcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCC--eeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCceEEE
Q 014754 253 QIH-CVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGY--RDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVII 329 (419)
Q Consensus 253 ~v~-~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~--~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~v~i 329 (419)
++. ..+++|+++.+...|+++|++|..-.-+. ..++ ...=.|.++.. +.....++.+.|...+.. ..+.+
T Consensus 443 ~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~-~~~~~~~~~isf~v~~~-----~~~~~~~~l~~l~~~~~~-~~i~~ 515 (587)
T PRK07431 443 AIRNVPDRPGMAASIFGALAEANISVDMIVQSQ-RCRSDGTRDISFTVPKE-----DREAAQKVLRELAKQLPG-AEVED 515 (587)
T ss_pred EECCCCCCccHHHHHHHHHHHcCCeEEEEEecC-CCCCCCceeEEEEEcHH-----HHHHHHHHHHHHHHhcCC-ceEEE
Confidence 664 46789999999999999999998775531 1221 11113555431 111222222223222211 12222
Q ss_pred ecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754 330 ANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAA 373 (419)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~ 373 (419)
... -..+.+.|. .+||++..+..+|.+.|++|....
T Consensus 516 ~~~--------va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 516 GPA--------IAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred eCC--------eEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 111 237888886 889999999999999999997666
No 65
>PRK00194 hypothetical protein; Validated
Probab=97.92 E-value=4.6e-05 Score=60.94 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=49.7
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
.+.++|.++||||++++++++|+++|+||.+.+..+ .++.+.-.+.+.-+. . +...+.|++.|....
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~-~~~~~~~~~~v~~~~-~---~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI-MDGYFTMIMLVDISE-S---KKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh-hCCeeEEEEEEEecC-C---CCCHHHHHHHHHHHH
Confidence 678999999999999999999999999999999876 466655544443221 1 112456777777653
No 66
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.80 E-value=0.00033 Score=68.04 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=63.2
Q ss_pred EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCc--eEE
Q 014754 251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPL--RVI 328 (419)
Q Consensus 251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~--~v~ 328 (419)
+|++.|+|||||++.|++.|+++|+||.+.+-..+..++.+.-.+.++..+..+ ..+.|+++|.+++...+ .+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~----~~~~l~~~l~~~~~~~~~l~i~ 77 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRL----EESSLLAAFKSALAEKFEMTWE 77 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhCCEEE
Confidence 789999999999999999999999999999887531233333222233322122 25677777665344433 333
Q ss_pred EecCCCCcccccceeEEEeeCCCCccHHHHHHHHHHcCc
Q 014754 329 IANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGI 367 (419)
Q Consensus 329 i~~~~~~~~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v 367 (419)
+..... ..++-|....+..-+.+|....+.-.+
T Consensus 78 l~~~~~------~~ki~vl~Sg~g~nl~~l~~~~~~g~l 110 (280)
T TIGR00655 78 LILADK------LKRVAILVSKEDHCLGDLLWRWYSGEL 110 (280)
T ss_pred EecCCC------CcEEEEEEcCCChhHHHHHHHHHcCCC
Confidence 333211 113333333334466666666654443
No 67
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.78 E-value=0.00034 Score=68.19 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=48.8
Q ss_pred CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE--ecCCCcCCCHHHHHHHHHHHHHH
Q 014754 247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ--QKDGKKIVDPEKQSAICSRLKME 320 (419)
Q Consensus 247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v--~~~g~~~~d~~~~~~l~~~L~~~ 320 (419)
.++++|+|.|+|||||+++|+++|+++|+||.+.+..+...++ .|.+ ..+..+- +...+.|+++|.+.
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~i~v~~~~~--~~~~~~L~~~L~~l 73 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMRVEFEGDGL--IFNLETLRADFAAL 73 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEEEEEEeCCC--CCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999998611233 3633 3222111 12367888877543
No 68
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.78 E-value=0.00018 Score=56.15 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=48.2
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
..+.|.|.+.||||+|++|+.++++.|+||.+..+.+.. ++.+.-.|.+.-. +.+.++.|.+.|++
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHHCT
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999998753 6777777777543 34455555444443
No 69
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.76 E-value=0.00057 Score=66.66 Aligned_cols=68 Identities=15% Similarity=0.257 Sum_probs=52.1
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEec-CCCCcccHHHHHHHHHhhCC
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVP-HSSSIIRWTNLKNRLMLECP 88 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~-~~g~~~~~~~l~~~Le~~L~ 88 (419)
..+.|+|.|+|||||+++++++|+++|+||.+.+.++ .+..|.-.+.+.- +.. ...+.|++.|++...
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~--~~~~~L~~~L~~l~~ 75 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLI--FNLETLRADFAALAE 75 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCC--CCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999886 4333445555543 222 257888888887653
No 70
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.74 E-value=5.1e-05 Score=59.89 Aligned_cols=66 Identities=23% Similarity=0.419 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee-ecCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDIS-TDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC 87 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~-tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L 87 (419)
...|||.|+||||+.+.++++|+++|.||++-.=. -+|.+ --.+.|.-+. ...+..+++..++...
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~f-tm~~lV~~~~-~~~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFF-TMIMLVDISK-EVVDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhc-eeeeEEcCCh-HhccHHHHHHHHHHHH
Confidence 36899999999999999999999999999985532 38885 3445553331 2236677777776654
No 71
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.74 E-value=0.00041 Score=67.63 Aligned_cols=68 Identities=15% Similarity=0.274 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee--e-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIS--T-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC 87 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~--t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L 87 (419)
....|+|.|||||||.++++++|+++|+||++.+-+ + .|.+| -.+.+.+........+.+++.|+...
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff-m~i~~~~~~~~~~~~~~l~~~l~~l~ 78 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF-MRVSFHAQSAEAASVDTFRQEFQPVA 78 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE-EEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999999999986 3 44443 33333322111236777877777754
No 72
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.71 E-value=0.00068 Score=65.83 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=67.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCccccccc
Q 014754 22 VITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQ 98 (419)
Q Consensus 22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~~~ 98 (419)
.|+|.|||+||+++.+++.|+++|+||++.+.+. .|.+ .-.+.+..++ .....+.+++.|+.++..... +.-.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F-~mr~~v~~~~-~~~~~~~l~~~l~~~~~~~~~-l~i~- 77 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRF-FMRVEFQLEG-FRLEESSLLAAFKSALAEKFE-MTWE- 77 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeE-EEEEEEEeCC-CCCCHHHHHHHHHHHHHHHhC-CEEE-
Confidence 5899999999999999999999999999999876 3664 4455554443 123578888888873322221 0000
Q ss_pred CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 014754 99 LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT 142 (419)
Q Consensus 99 ~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~ 142 (419)
.... .....|-|..--+..-|..+......-.+++.=+-+.
T Consensus 78 -l~~~--~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vi 118 (280)
T TIGR00655 78 -LILA--DKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVI 118 (280)
T ss_pred -EecC--CCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEE
Confidence 0000 0112333333333444666666666555554433444
No 73
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.68 E-value=0.0017 Score=53.73 Aligned_cols=113 Identities=13% Similarity=0.122 Sum_probs=78.6
Q ss_pred EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEE-EEecCCCcCCCHHHHHHHHHHHHHHhcCCceEEE
Q 014754 251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVII 329 (419)
Q Consensus 251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F-~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~v~i 329 (419)
-|+|...++||=|..++.+|+++|+||.--.|+ ..|+ | ++.. -+++|+.. .+.|+ +.+..+.+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiA--dt~d-----FGIiRm---vV~~~d~A---~~~Le---e~gF~Vr~ 68 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIA--DTGD-----FGIIRM---VVDRPDEA---HSVLE---EAGFTVRE 68 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEec--cccC-----cceEEE---EcCChHHH---HHHHH---HCCcEEEe
Confidence 467888999999999999999999999999998 3577 7 4421 11223221 12221 12222221
Q ss_pred ecCCCCcccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEc
Q 014754 330 ANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDE 393 (419)
Q Consensus 330 ~~~~~~~~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d 393 (419)
...+-+.-.|+||=++.|..+|.+.++|+...-..++.. .+ +.-.|.+.|
T Consensus 69 -----------~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek--~K-Alli~r~ed 118 (142)
T COG4747 69 -----------TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK--QK-ALLIVRVED 118 (142)
T ss_pred -----------eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC--ce-EEEEEEhhH
Confidence 236677889999999999999999999999988776433 22 666666644
No 74
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.65 E-value=0.00051 Score=52.42 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=47.3
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
|.|.+.||||+|++|+.++++.|.||.+....+..++.+...|.+.-. +.+.++.+.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence 688999999999999999999999999888876545676666666433 34455666666555
No 75
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.64 E-value=0.0011 Score=64.62 Aligned_cols=114 Identities=16% Similarity=0.216 Sum_probs=72.3
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCc--c
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSV--S 93 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~--~ 93 (419)
....|+|.|+||||++++++++|+++|+||.+.+.++ .|.+ .-.+.+..+.+. ..+.|+++|+.......- .
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F-~m~~~~~~p~~~--~~~~L~~~L~~l~~~l~l~i~ 82 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRF-FMRVEFHSEEGL--DEDALRAGFAPIAARFGMQWE 82 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeE-EEEEEEecCCCC--CHHHHHHHHHHHHHHhCcEEE
Confidence 3578999999999999999999999999999999873 5554 345666545443 578888888886543221 0
Q ss_pred cccccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 014754 94 FYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTT 143 (419)
Q Consensus 94 ~~~~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T 143 (419)
... ... ...|-|.+.-+.--|..+........++..=+-+.|
T Consensus 83 i~~------~~~--~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 83 LHD------PAA--RPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred Eee------ccc--CceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence 110 111 113344433344446666666666655544444443
No 76
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.63 E-value=8.1e-05 Score=58.76 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=51.7
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~ 180 (419)
..+|+|.|.||||+.+.++++|+++|+||++-.-. -.+|++--.+.|.-+. +......+++.|....+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQt-vm~~~ftm~~lV~~~~----~~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQT-VMDGFFTMIMLVDISK----EVVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH-HHhhhceeeeEEcCCh----HhccHHHHHHHHHHHHH
Confidence 46899999999999999999999999999976663 4577776777775432 12345677777777654
No 77
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.58 E-value=0.00029 Score=68.65 Aligned_cols=71 Identities=13% Similarity=-0.029 Sum_probs=47.9
Q ss_pred ceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHH
Q 014754 341 ANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRAL 416 (419)
Q Consensus 341 ~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l 416 (419)
.+.+.+.|.||||||++||++|+++|+||.+++..+....+. -..++.+.-+.+..++ .-+.-.+.+.++|
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~--F~m~~~~~~p~~~~~~---~L~~~L~~l~~~l 77 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGR--FFMRVEFHSEEGLDED---ALRAGFAPIAARF 77 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCe--EEEEEEEecCCCCCHH---HHHHHHHHHHHHh
Confidence 457999999999999999999999999999999874322222 2334444445553333 4444445555554
No 78
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.47 E-value=0.0011 Score=51.68 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=46.4
Q ss_pred CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHH
Q 014754 248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRL 317 (419)
Q Consensus 248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L 317 (419)
..+-|.|.+.||||+|.+|+.++.+.|+||....+.+...++.+.=.|-+.. .|.++++.|.+.|
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-----~d~~~L~~ii~~L 69 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-----KDLEHLNQIIRKL 69 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-----CCHHHHHHHHHHH
Confidence 4567999999999999999999999999999999996211444443343333 3456778777776
No 79
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.45 E-value=0.0024 Score=62.35 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=33.4
Q ss_pred CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEe
Q 014754 248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFS 283 (419)
Q Consensus 248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~ 283 (419)
.+++|+|.|+|||||++.|+..|+++|+||.+..-.
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 457999999999999999999999999999998874
No 80
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00081 Score=63.46 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=50.7
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHhh
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLE 86 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~ 86 (419)
....+++.|||++||+++|++.|+++||||.++.=++ .|.+||-+-+. .++.+...+.+++.+...
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~--~~~~~~~~~~l~~~f~~~ 74 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFE--GEGGPLDREALRAAFAPL 74 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEe--cCCCcccHHHHHHHHHHH
Confidence 5679999999999999999999999999999999876 45555443222 233334678888888773
No 81
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.31 E-value=0.0019 Score=49.18 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=45.9
Q ss_pred EEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 014754 252 LQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLK 318 (419)
Q Consensus 252 i~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~ 318 (419)
|.|.+.||||+|.+|+.++++.|.||.+....+. ..+.+.-.|.+.. .+.++++.+.++|.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev-----~~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDA-----PSEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEc-----CCHHHHHHHHHHHh
Confidence 6889999999999999999999999998888752 3344443354433 33567888887764
No 82
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.27 E-value=0.0016 Score=50.77 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=50.0
Q ss_pred eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754 343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA 415 (419)
Q Consensus 343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~ 415 (419)
.+.+.-.|+||.|+++...|+++|+||.+..+... .... ..+.|++ |.+|. .. +..-+.+++.++..
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~--~~~~-~~~~f~v-d~~~~-~~-~~~~~~~l~~l~~~ 69 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPS--KGGL-WEYVFFI-DFEGH-IE-DPNVAEALEELKRL 69 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEc--CCCC-ceEEEEE-EEECC-CC-CHHHHHHHHHHHHh
Confidence 56667789999999999999999999999987753 2222 5689998 54554 22 44556777887764
No 83
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.22 E-value=0.0023 Score=49.51 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=46.9
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
+.|.+...|+||+|++++++|+..|.||.+..+.-+.+ +..--++.+. | ++...+.|...|.+..
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~---~---~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV---C---TENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE---C---CHHHHHHHHHHHhCCc
Confidence 46899999999999999999999999999888864333 3332233332 1 2456677777777654
No 84
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.21 E-value=0.0013 Score=47.39 Aligned_cols=47 Identities=23% Similarity=0.413 Sum_probs=39.9
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEc
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~ 157 (419)
|.+..+|+||.+++++..|.++|+||.+..+....++...-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999988654477777777754
No 85
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.0022 Score=60.61 Aligned_cols=69 Identities=14% Similarity=0.267 Sum_probs=48.1
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754 106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHAV 178 (419)
Q Consensus 106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~ 178 (419)
++.+++++.|+|++||++.|++.|+++|+||.++.-++.. .|+++.--......+ +...+.|++.|..+
T Consensus 5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~----~~~~~~l~~~f~~~ 74 (287)
T COG0788 5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG----PLDREALRAAFAPL 74 (287)
T ss_pred ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC----cccHHHHHHHHHHH
Confidence 3578999999999999999999999999999999998533 333322222222111 13345677777763
No 86
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.15 E-value=0.0043 Score=46.34 Aligned_cols=62 Identities=21% Similarity=0.192 Sum_probs=41.4
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec----CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP----DGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~----~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
+.|..+|+||+|++|+.+|+++|+||.+....... .+...-.|.+... +.+.++.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 35778999999999999999999999988765322 2444444444321 23445555555543
No 87
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.09 E-value=0.0041 Score=47.48 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=45.3
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHH-HHHHHHHHHHH
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKK-RQDETCEQLHA 177 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~-~~~~l~~~L~~ 177 (419)
.+.|.++|+||++++|++.|+++|+||......+..++.+.-.|.+...+ .+ .+++|.++|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~-----~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST-----MNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc-----hHHHHHHHHHHHhc
Confidence 57899999999999999999999999998876543345555556664322 22 45555555554
No 88
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.06 E-value=0.004 Score=56.09 Aligned_cols=66 Identities=14% Similarity=0.249 Sum_probs=48.2
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~ 180 (419)
..+.|.+.|+||+|++++++|+..|+||.+..+..+.. +..--++.+. . ++..++.|.+.|.+..+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~----~~~~ieqL~kQL~KLid 69 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--G----DDRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--C----CHHHHHHHHHHHHHHhH
Confidence 47999999999999999999999999999998865332 3332223222 1 12336788888888763
No 89
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.02 E-value=0.0041 Score=48.86 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=48.0
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCe-EEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGR-VLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~-~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
..|.+...|+||.|+++++.|+..|+||.+..+..+.+.. .--++.+... ++..++.+...|.+..
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~-----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ-----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC-----CHHHHHHHHHHHhCCc
Confidence 3689999999999999999999999999999887654433 3333333211 3455677777777754
No 90
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.01 E-value=0.0047 Score=49.75 Aligned_cols=67 Identities=12% Similarity=0.276 Sum_probs=48.3
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCC-eEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG-RVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~-~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
.....|.+...|+||+|++|++.|+..|.||.+..+.-+..+ ..--++.+ . +++.++++...|.++.
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv-~------~~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV-N------DDQRLEQMISQIEKLE 73 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE-c------CchHHHHHHHHHhCCc
Confidence 345679999999999999999999999999998887644332 22223322 2 1346677777777765
No 91
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0011 Score=50.38 Aligned_cols=68 Identities=16% Similarity=0.304 Sum_probs=51.3
Q ss_pred EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEE-EE-ecCCCcCCCHHHHHHHHHHHH
Q 014754 251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQ-QKDGKKIVDPEKQSAICSRLK 318 (419)
Q Consensus 251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F-~v-~~~g~~~~d~~~~~~l~~~L~ 318 (419)
-+++.|+-||-.+||++-+|+.+|+.|.+|.|.....+++...+| ++ +..+..++.......+.+.+.
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~ 71 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVT 71 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHH
Confidence 378999999999999999999999999999999754577777776 44 444444554555556655543
No 92
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0042 Score=49.78 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=52.8
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHc
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALM 417 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l~ 417 (419)
+.+-+...|+||-|+++-..|+++|||+.+++++. ..+.. -.+.||+ |.+|. .+ ..-+++++.+++.|.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP--~~~~~-~~Y~FfV-Dieg~--~~-~~~~~~l~~L~~~~~ 83 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRP--SRLNK-DEYEFFI-NLDKK--SA-PALDPIIKSLRNDIG 83 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCC-ceEEEEE-EEEcC--CC-HHHHHHHHHHHHHhC
Confidence 35556668999999999999999999999999986 33333 4699999 76775 22 344677788888775
No 93
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.0075 Score=45.27 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=36.8
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCC-eEEEEEEEE
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG-RVLDLFFIT 156 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~-~~~d~F~V~ 156 (419)
+.+.+..+|+||.|+++++.|+++|+||.+.......++ ...-.|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 568889999999999999999999999998877654322 333344443
No 94
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.95 E-value=0.0044 Score=47.69 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=47.7
Q ss_pred EEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754 344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA 415 (419)
Q Consensus 344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~ 415 (419)
+-+.-.|+||-|+++...|+.+|||+.+.++.. ..+.. -.+.||+ |.+| . ...-+++++.+++.
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP--~~~~~-~~y~Ffv-d~~~---~-~~~~~~~l~~L~~~ 66 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRP--SRRNG-SEYEFFV-DCEV---D-RGDLDQLISSLRRV 66 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCC--CCCCC-ceEEEEE-EEEc---C-hHHHHHHHHHHHHh
Confidence 344557899999999999999999999999986 33333 5799999 7677 2 22346666766654
No 95
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.91 E-value=0.0076 Score=53.40 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=51.1
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
..|+|...|+||.|++|++.|+++|+||.+..+..+. .+...-+|.|.. ++...+.|...|.+..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence 4689999999999999999999999999999887654 355555555542 2456778888888765
No 96
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.88 E-value=0.0058 Score=46.83 Aligned_cols=34 Identities=24% Similarity=0.560 Sum_probs=31.8
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTT 143 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T 143 (419)
.|.|.+.||+|++++|+.++++.|+||.+..+.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~ 35 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP 35 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec
Confidence 4789999999999999999999999999999875
No 97
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.85 E-value=0.0095 Score=52.98 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=50.5
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
..|+|...|+||.|++|++.|+++|+||.+..+..+. .+...-+|.|.. ++..++.+...|.++.
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999998887554 355555555542 3556778888888765
No 98
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.84 E-value=0.0073 Score=46.31 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=47.6
Q ss_pred EEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754 345 ELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA 415 (419)
Q Consensus 345 ~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~ 415 (419)
-+.-.|+||.|++|...|+++|+|+.+.++.. ..+.. ..+.||+ |.+|.+- +..-+.+++.+++.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp--~~~~~-~~~~f~i-d~~~~~~--~~~~~~~l~~l~~~ 67 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRP--SRKGL-WEYEFFV-DFEGHID--DPDVKEALEELKRV 67 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeee--cCCCC-ceEEEEE-EEECCCC--CHHHHHHHHHHHHh
Confidence 34457999999999999999999999998774 33322 6789999 6666321 23446777777764
No 99
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.81 E-value=0.0064 Score=54.74 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=32.7
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGR 376 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t 376 (419)
+.+.+.+.||||+|.+|+.+|+++|+||.++.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 36899999999999999999999999999999964
No 100
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.0088 Score=45.39 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=42.1
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
.|.|.+.|+||++++++.+|+++|+||.+....+..+ +.+.-.|.+.. .+...++++.+.|.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~-----~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE-----TSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc-----CCHHHHHHHHHHHHc
Confidence 4788999999999999999999999999887754323 44433333322 133444444444443
No 101
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.79 E-value=0.014 Score=45.34 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=38.6
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcC
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDN 158 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~ 158 (419)
+.+.+..+|+||.|+++...|+++|+||.+.......++...-.|+|.-.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~ 51 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE 51 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence 35677789999999999999999999999887664434445566777543
No 102
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.79 E-value=0.0085 Score=46.38 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=47.7
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCC-eEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDG-RVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~-~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
+.+.+...|+||.|++++++|+..|.||.+..+.-+.++ ..--++.| . + +..++.|.+.|.++.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~-----~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S-----ERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C-----CchHHHHHHHHhcCc
Confidence 578999999999999999999999999999998755443 33334444 2 1 334567777777654
No 103
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.78 E-value=0.0077 Score=44.95 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=41.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEeee------cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 23 ITVNCPDKTGLGCDICRIILDFGLYITKGDIST------DGIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 23 v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t------dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
+.|..+|+||++++|+.+|+++|+||.+..... .|.. ...|.+...+. ...+.+.+.|++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~-~~~i~v~~~~~--~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEV-EVELTLETRGA--EHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceE-EEEEEEEeCCH--HHHHHHHHHHHH
Confidence 357789999999999999999999999888664 2443 34455533321 144556566654
No 104
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.73 E-value=0.0078 Score=44.58 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=36.8
Q ss_pred EEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEE
Q 014754 344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLL 391 (419)
Q Consensus 344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~ 391 (419)
+.+...|+||++.+|+.+|++.|+||.++.+......+. ....|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~--~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGI--AYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCE--EEEEEEc
Confidence 567899999999999999999999999999865221122 5667766
No 105
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.66 E-value=0.013 Score=43.48 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=43.6
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee-cCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT-PDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~-~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
.+.+.+.|+||++++++.+|+++|+||.+....+. .++.+.-.|.+.. .+ ..++.+.+.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHhC
Confidence 36788999999999999999999999999888754 2444444444432 12 445555555554
No 106
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.64 E-value=0.0086 Score=44.76 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=32.8
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT 144 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~ 144 (419)
..+.|..+|+||.|++++..|+++|+||.+..++..
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~ 37 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADT 37 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEec
Confidence 468889999999999999999999999999988754
No 107
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.63 E-value=0.0069 Score=43.55 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=38.3
Q ss_pred EEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEc
Q 014754 344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDE 393 (419)
Q Consensus 344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d 393 (419)
+++...|+||.+.+++..|.++|+||.++.+.... ++. +...|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~--~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEF--GILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCc--EEEEEEECC
Confidence 35678999999999999999999999999987632 233 788888855
No 108
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.62 E-value=0.0094 Score=45.94 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=48.4
Q ss_pred EEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754 344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA 415 (419)
Q Consensus 344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~ 415 (419)
+-+.-.|+||-|+++-..|+.+|+|+.+++++. ..+.. -.+.||+ |.+|.. ..-+.+++.+++.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP--~~~~~-~~y~F~i-d~e~~~----~~i~~~l~~l~~~ 66 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRK--SKRRS-SEFEIFV-DCECDQ----RRLDELVQLLKRE 66 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCC-ceEEEEE-EEEcCH----HHHHHHHHHHHHh
Confidence 334457999999999999999999999999986 33333 5699999 666643 1456777777764
No 109
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.60 E-value=0.016 Score=44.78 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=46.8
Q ss_pred eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHH
Q 014754 250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKME 320 (419)
Q Consensus 250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~ 320 (419)
..+.+...|+||+|..++.+|...|+||.+-.+.. |.......+.++- .| +++..+.|.++|.+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~-te~~~~sriti~~-~~----~~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNE-RDTSGVSEMKLTA-VC----TENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecc-cCCCCeeEEEEEE-EC----CHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999988874 3333333333331 12 346778888887544
No 110
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.60 E-value=0.0074 Score=44.90 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=43.1
Q ss_pred eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHH
Q 014754 343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVR 413 (419)
Q Consensus 343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~ 413 (419)
.+.+.+.|+||++.+++.+|++.|++|.++...+...++. +...|.+... + ....++++.++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~------~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGI--SRITIVVEGD------D-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCe--EEEEEEEECC------H-HHHHHHHHHHh
Confidence 4678899999999999999999999999999765211222 4555555322 1 23356666655
No 111
>PRK07431 aspartate kinase; Provisional
Probab=96.59 E-value=1.4 Score=47.42 Aligned_cols=191 Identities=14% Similarity=0.125 Sum_probs=112.2
Q ss_pred CCcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCc--
Q 014754 18 GEPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSV-- 92 (419)
Q Consensus 18 ~~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~-- 92 (419)
.+...|+|++. +.+|+.+++..+|++.|.||.... +.+.- ..|.|... +.++..+.|.+.+.....
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe~~--Is~vv~~~-----d~~~av~~Lh~~f~~~~~~~ 416 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEVK--VSCVIDAE-----DGDKALRAVCEAFELEDSQI 416 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCE--EEEEEcHH-----HHHHHHHHHHHHhccCCccc
Confidence 35678889885 899999999999999999997544 33331 35555322 234444666666633221
Q ss_pred cccc---ccCC----CCCCCCCeEEEEEE-ecCcccHHHHHHHHHHhCCceEEEEEEEeecC--CeEEEEEEEEcCCCCC
Q 014754 93 SFYF---NQLS----TRPTCSPVYLLKLF-CLDRKGLLHDVTQVLCELELSIQRVKVTTTPD--GRVLDLFFITDNRELL 162 (419)
Q Consensus 93 ~~~~---~~~~----~~~~~~~~~~i~v~-~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~--~~~~d~F~V~~~~g~~ 162 (419)
...+ ++.. .-........|++. .++.+|+++++.+.|+++|+||..-......+ |..--.|.+..
T Consensus 417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----- 491 (587)
T PRK07431 417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----- 491 (587)
T ss_pred ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence 0111 0000 00122345556654 47889999999999999999999553321112 12222344422
Q ss_pred CCHHHHHHHHHHHHHHHcccccccccccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEe
Q 014754 163 HTKKRQDETCEQLHAVLGESCISCELQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVD 242 (419)
Q Consensus 163 ~~~~~~~~l~~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~ 242 (419)
++.....+.+++ +.... ....+.++
T Consensus 492 ---~~~~~~~~~l~~-l~~~~---------------------------------------------------~~~~i~~~ 516 (587)
T PRK07431 492 ---EDREAAQKVLRE-LAKQL---------------------------------------------------PGAEVEDG 516 (587)
T ss_pred ---HHHHHHHHHHHH-HHHhc---------------------------------------------------CCceEEEe
Confidence 222233222333 21110 00123332
Q ss_pred CCCCCCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEE
Q 014754 243 NSLSPAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGR 281 (419)
Q Consensus 243 n~~~~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~ 281 (419)
.+...|.+.|. .+||++.++..+|.+.|+++....
T Consensus 517 ----~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 517 ----PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred ----CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 35678888886 689999999999999999995544
No 112
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.59 E-value=0.016 Score=43.32 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=42.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
..++|..+|+||.+++++..|+++|+||....++..+.- .++.+.. + +.+.+.+.|++
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~-~----~~~~~~~~L~~ 59 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV-S----DPDKAKEALKE 59 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE-C----CHHHHHHHHHH
Confidence 468899999999999999999999999999998764332 3444433 2 24445455554
No 113
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.53 E-value=0.0097 Score=44.06 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=37.6
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEE
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFI 155 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V 155 (419)
+.|.+.|++|++++++.+|+++|+||.+..+.... ++...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67889999999999999999999999999987543 3566666666
No 114
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.46 E-value=0.023 Score=42.10 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=34.8
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEee-cCCeEEEEEEE
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT-PDGRVLDLFFI 155 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~-~~~~~~d~F~V 155 (419)
+.+..+|+||.+++++..|+++|+||.+...... .++...-.|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 5788999999999999999999999998887642 23444433433
No 115
>PRK08577 hypothetical protein; Provisional
Probab=96.45 E-value=0.029 Score=48.43 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=47.3
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
...+.|.|.+.|+||+|++++++|+++|+||.+....+.. ++.+.-.|.+.-.+. +..++.+.+.|.+
T Consensus 54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~~ 122 (136)
T PRK08577 54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELKK 122 (136)
T ss_pred ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHHc
Confidence 3588999999999999999999999999999988877654 343434443432211 1234555555544
No 116
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.45 E-value=0.023 Score=43.21 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=44.4
Q ss_pred EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHH-HHHHHHHHHH
Q 014754 251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPE-KQSAICSRLK 318 (419)
Q Consensus 251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~-~~~~l~~~L~ 318 (419)
.+.+.+.||||+|++|+.+++++|+||......+ ..++.+.=.|.+... +.+ +++.|.++|.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~-----~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTS-----TMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcC-----chHHHHHHHHHHHh
Confidence 4789999999999999999999999999887653 123333333545432 233 6777777764
No 117
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.43 E-value=0.017 Score=42.50 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=34.2
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEE
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFI 155 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V 155 (419)
+.|..+|+||-|+++++.|+++|+||.+...+... .+...-.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 67888999999999999999999999987765432 2444333433
No 118
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.42 E-value=0.012 Score=44.98 Aligned_cols=37 Identities=14% Similarity=0.458 Sum_probs=33.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCc
Q 014754 22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGI 58 (419)
Q Consensus 22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~ 58 (419)
.+.|.+.||+|++++|+.++++.|.||.+.++.++|.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~~~ 38 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPKGR 38 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecCCe
Confidence 4789999999999999999999999999999887643
No 119
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.39 E-value=0.0096 Score=45.18 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=43.4
Q ss_pred eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754 343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~ 414 (419)
.+.+.+.|+||++.+++..|++.|+||..+...... ++.. +.-.|.+... +...-+++++.+++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~-~~~~-~~~~i~~~~~------~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEAD-GGET-APVVIVTHET------SEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccC-CCCc-eeEEEEEccC------CHHHHHHHHHHHHc
Confidence 578889999999999999999999999999865421 2121 3334444222 24444566666664
No 120
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.37 E-value=0.027 Score=38.64 Aligned_cols=46 Identities=35% Similarity=0.523 Sum_probs=35.0
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEE
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFIT 156 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~ 156 (419)
|.+.++|++|++++++++|+.+|++|...............+++..
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVV 46 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEE
Confidence 4688999999999999999999999999887653222333444444
No 121
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.37 E-value=0.024 Score=42.49 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=43.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeec--CcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDISTD--GIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~td--G~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
..+.|..+|+||.++++++.|+++|+||.....+.. +......+.+..++ ..+++.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~----~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE----DRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH----HHHHHHHHHHH
Confidence 468889999999999999999999999998887652 31122345553221 34566566665
No 122
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.36 E-value=0.018 Score=43.38 Aligned_cols=46 Identities=26% Similarity=0.418 Sum_probs=36.5
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEee-cCCeEEEEEEEE
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT-PDGRVLDLFFIT 156 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~-~~~~~~d~F~V~ 156 (419)
+.+..+|+||.++++++.|+++|+||.+...... .++...-+|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 4568999999999999999999999998877543 345666666554
No 123
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.35 E-value=0.015 Score=43.77 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=35.2
Q ss_pred EEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEE
Q 014754 345 ELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLD 392 (419)
Q Consensus 345 ~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~ 392 (419)
-+.+.|+||.+.++++.|+++|+||.+..+.....++. +...|.+.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~--~~~~i~v~ 48 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGE--ALMVLSVD 48 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCE--EEEEEEeC
Confidence 45789999999999999999999999988754222222 56666663
No 124
>PRK04435 hypothetical protein; Provisional
Probab=96.32 E-value=0.041 Score=48.24 Aligned_cols=71 Identities=24% Similarity=0.238 Sum_probs=51.3
Q ss_pred CCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 103 PTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 103 ~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
...+....|.+...|+||+|++|+++|+++|+||.........+|.+.-.|.+...+. ...++.|.+.|+.
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~----~~~L~~Li~~L~~ 134 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM----EGDIDELLEKLRN 134 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh----HHHHHHHHHHHHc
Confidence 3456788999999999999999999999999999987765434566655666654221 1245555555554
No 125
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31 E-value=0.034 Score=41.34 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=42.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeec--CcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 22 VITVNCPDKTGLGCDICRIILDFGLYITKGDISTD--GIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~td--G~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
++.+.++|+||.+++++..|+++++||.+.....+ |.+ .-.|.+... . ..+.+.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~-~~~i~~~~~-~---~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKA-RIYMELEGV-G---DIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeE-EEEEEEecc-c---cHHHHHHHHhC
Confidence 57889999999999999999999999998887653 443 334555332 1 34455455554
No 126
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.30 E-value=0.022 Score=42.43 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=35.7
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI 155 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V 155 (419)
.+.+.++|+||.+++++..|+++++||.+....+..++...-.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 47 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL 47 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence 5788999999999999999999999999888764333444333333
No 127
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.29 E-value=0.026 Score=44.39 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=48.0
Q ss_pred EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHh
Q 014754 251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEM 321 (419)
Q Consensus 251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l 321 (419)
++.+...|+||+|.+++..|...|+||.+-.+.. |.-.....+=++ .. | |++..+++.++|.+.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~-Te~~~iSRmtivv~~-~----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTH-SEQPGISNMEIQVDI-Q----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecc-cCCCCceEEEEEEeC-C----CHHHHHHHHHHHhCCc
Confidence 6889999999999999999999999999999985 443333332232 21 2 4567788888875443
No 128
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.19 E-value=0.048 Score=39.37 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=34.8
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI 155 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V 155 (419)
|.|.++|+||.+.+++..|.+++++|.+..+....++...-.|.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL 45 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence 467899999999999999999999999998875332444333444
No 129
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.18 E-value=0.033 Score=44.90 Aligned_cols=66 Identities=9% Similarity=0.176 Sum_probs=47.9
Q ss_pred CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHH
Q 014754 248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKME 320 (419)
Q Consensus 248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~ 320 (419)
...+|.+...|+||+|..|+..|+..|+||.+-.+.. |.-....-+.++-. + ++.+++|.++|.+.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~-te~~~iSRmtivv~-~-----~~~i~Qi~kQL~KL 72 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLP-IQDGDKSRIWLLVN-D-----DQRLEQMISQIEKL 72 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEee-cCCCCceEEEEEEc-C-----chHHHHHHHHHhCC
Confidence 3456899999999999999999999999999998875 33333333334321 2 25678888887544
No 130
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.18 E-value=0.031 Score=41.42 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=29.6
Q ss_pred EEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754 344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGR 376 (419)
Q Consensus 344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t 376 (419)
+.+...||||++.+++..|+++|++|.++....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 567899999999999999999999999887653
No 131
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.12 E-value=0.036 Score=42.01 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=29.6
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTT 143 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T 143 (419)
+.+..+|+||-|++++..|+++|.||.+.....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 678899999999999999999999999876653
No 132
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.10 E-value=0.07 Score=42.72 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=50.7
Q ss_pred eCCCCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHh
Q 014754 242 DNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEM 321 (419)
Q Consensus 242 ~n~~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l 321 (419)
++......|-|-+..+|+||-|+++...|+++|+|+.+-.-.-. .+....=.||++.+|. .+ ...+.+.+.|...+
T Consensus 7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~-~~~~~~Y~FfVDieg~--~~-~~~~~~l~~L~~~~ 82 (90)
T cd04931 7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPS-RLNKDEYEFFINLDKK--SA-PALDPIIKSLRNDI 82 (90)
T ss_pred cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccC-CCCCceEEEEEEEEcC--CC-HHHHHHHHHHHHHh
Confidence 33444455777777799999999999999999999988776531 2333333578888875 23 34444445554443
No 133
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.08 E-value=0.03 Score=43.33 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=32.7
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGR 376 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t 376 (419)
+.+++...++||+|..++..|+..|+||.++....
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~ 38 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ 38 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee
Confidence 46888999999999999999999999999999975
No 134
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.04 E-value=0.04 Score=48.85 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=31.6
Q ss_pred eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754 343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGR 376 (419)
Q Consensus 343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t 376 (419)
.+.+.-.|+||.|.+|+..|+++|+||.++.+..
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~ 36 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGP 36 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEee
Confidence 5788899999999999999999999999998775
No 135
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.02 E-value=0.0077 Score=45.02 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=42.1
Q ss_pred EEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754 344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~ 414 (419)
+-+.+.||||++.+++..|++.|+||..+...+ .++. +...|.+... .. +.+++++++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~--a~~~~~~~~~----~l-----~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEI--GYVVIDIDSE----VS-----EELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCE--EEEEEEcCCC----CC-----HHHHHHHHc
Confidence 446789999999999999999999998887654 3333 6666666332 22 467777664
No 136
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.95 E-value=0.075 Score=39.94 Aligned_cols=59 Identities=24% Similarity=0.225 Sum_probs=43.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
+.+.+..+|+||.++++++.|+++|+||.+..... .|. ..-+|.+.. . ..+.+.+.|++
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~-~~v~i~v~~-~----~~~~~~~~L~~ 63 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDN-KILVFRVQT-M----NPRPIIEDLRR 63 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCe-EEEEEEEec-C----CHHHHHHHHHH
Confidence 57899999999999999999999999999887553 344 345566633 2 23456566655
No 137
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=95.93 E-value=0.052 Score=48.32 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=31.5
Q ss_pred eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754 343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGR 376 (419)
Q Consensus 343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t 376 (419)
.+.+.-.|+||.|.+|+..|+++|+||.++.+..
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~ 37 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGP 37 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeee
Confidence 6788899999999999999999999999998765
No 138
>PRK08577 hypothetical protein; Provisional
Probab=95.93 E-value=0.13 Score=44.48 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=46.1
Q ss_pred CCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 17 PGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 17 ~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
....+.+.|.+.|+||++++++++|++++.||.+....+ .+..+...|.+.-++. ....+.+.+.|++
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-~~~l~~l~~~L~~ 122 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-DIDLEELEEELKK 122 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-hhhHHHHHHHHHc
Confidence 334788999999999999999999999999999887664 2332233444432321 0135556555554
No 139
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.76 E-value=0.046 Score=40.67 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=38.3
Q ss_pred CcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 014754 117 DRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHAVL 179 (419)
Q Consensus 117 DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l 179 (419)
|+||.|.+|+++|...|+||.+..+..+.+ +..--++.+.. . +...+.|...|.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~-~-----~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG-D-----DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee-C-----chhHHHHHHHHhccC
Confidence 789999999999999999999999986444 44433444432 1 224556777776654
No 140
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.74 E-value=0.056 Score=40.97 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=29.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEeee
Q 014754 23 ITVNCPDKTGLGCDICRIILDFGLYITKGDIST 55 (419)
Q Consensus 23 v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t 55 (419)
+.|..+|+||-+++++..|+++|+||.+...+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 678899999999999999999999999887654
No 141
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.73 E-value=0.015 Score=43.44 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=34.6
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI 155 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V 155 (419)
+.+.+.|+||++++++.+|+++|+||......+ .++.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEc
Confidence 567899999999999999999999998876653 23555444444
No 142
>PRK04435 hypothetical protein; Provisional
Probab=95.56 E-value=0.18 Score=44.15 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=51.8
Q ss_pred EeCCCCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 014754 241 VDNSLSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLK 318 (419)
Q Consensus 241 v~n~~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~ 318 (419)
|+.........|.+...|+||+|++|..+++++|+||..-.... ..++.+.=.|-++..+. ..+++.|.++|.
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~----~~~L~~Li~~L~ 133 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSM----EGDIDELLEKLR 133 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCCh----HHHHHHHHHHHH
Confidence 45556778899999999999999999999999999998877653 23343433354543221 136777777763
No 143
>PRK11899 prephenate dehydratase; Provisional
Probab=95.55 E-value=0.048 Score=52.97 Aligned_cols=66 Identities=8% Similarity=0.004 Sum_probs=48.9
Q ss_pred eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754 343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~ 414 (419)
.+-+.-.|+||.|+++...|+++|||+.+++++. ..+.. -.+.||+ |.+|..-+ +.. ++.++.|++
T Consensus 196 sl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP--~~~~~-~~Y~F~i-d~eg~~~d-~~v-~~aL~~l~~ 261 (279)
T PRK11899 196 TFVFRVRNIPAALYKALGGFATNGVNMTKLESYM--VGGSF-TATQFYA-DIEGHPED-RNV-ALALEELRF 261 (279)
T ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeee--cCCCC-ceEEEEE-EEECCCCC-HHH-HHHHHHHHH
Confidence 4444557999999999999999999999999986 44444 5899999 88885433 333 444555544
No 144
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.54 E-value=0.051 Score=39.83 Aligned_cols=33 Identities=12% Similarity=-0.005 Sum_probs=28.8
Q ss_pred EEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754 344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGR 376 (419)
Q Consensus 344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t 376 (419)
+.+.-.||||.+.+++..|+++|+||.++....
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~ 34 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFV 34 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEc
Confidence 456678999999999999999999999887654
No 145
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.45 E-value=0.08 Score=38.11 Aligned_cols=47 Identities=28% Similarity=0.257 Sum_probs=35.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecC-cEEEEEEEEecC
Q 014754 23 ITVNCPDKTGLGCDICRIILDFGLYITKGDISTDG-IWCYIVLWVVPH 69 (419)
Q Consensus 23 v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG-~~~~d~f~V~~~ 69 (419)
+.|.++|+||.+.+++..|.+++++|.+..+...+ ......|.+..+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR 48 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC
Confidence 35778999999999999999999999999887632 322334444333
No 146
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.39 E-value=0.045 Score=45.93 Aligned_cols=66 Identities=8% Similarity=0.024 Sum_probs=48.9
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA 415 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~ 415 (419)
+.+-+.-.|+||-|+++-..|+++|||+.++++.. ..+.. -.+.||+ |.+|.. . .-..+++.|+..
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP--~~~~~-~eY~FfI-dieg~~-~---~~~~aL~~L~~~ 107 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRP--SRKEG-GDLEVLV-RCEVHR-S---DLLQLISSLRQV 107 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCc--CCCCC-ceEEEEE-EEEeCH-H---HHHHHHHHHHHh
Confidence 35555668999999999999999999999999986 32332 4689999 666643 1 356666777654
No 147
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.39 E-value=0.1 Score=39.22 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=36.7
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee-cCCeEEEEEEEE
Q 014754 109 YLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT-PDGRVLDLFFIT 156 (419)
Q Consensus 109 ~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~-~~~~~~d~F~V~ 156 (419)
+.+.+..+|+||.+.+++..|+++|+||.+....-. .++...-.|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 468889999999999999999999999997765422 234554455553
No 148
>PRK07334 threonine dehydratase; Provisional
Probab=95.37 E-value=0.12 Score=52.93 Aligned_cols=67 Identities=22% Similarity=0.187 Sum_probs=49.8
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee----cCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT----PDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~----~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
...+.|.|.+.||||+|++|+.+|++.++||.+....+. .++.+.-.|.+.-. +.+.++.+.+.|++
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRA 394 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999988753 34555444444322 34566666666665
No 149
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.25 E-value=0.13 Score=35.12 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=30.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEeee
Q 014754 23 ITVNCPDKTGLGCDICRIILDFGLYITKGDIST 55 (419)
Q Consensus 23 v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t 55 (419)
|.+.++|++|++++++++|+.++++|.......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~ 33 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT 33 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence 468899999999999999999999999998765
No 150
>PRK06291 aspartate kinase; Provisional
Probab=95.05 E-value=0.98 Score=47.21 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=69.7
Q ss_pred CCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 247 PAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 247 ~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
.+.+.|++.+. +.||+++++..+|.++|++|..-.-++ ..... .|.++. +..+...+.|...+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~sI--sf~V~~--------~d~~~av~~L~~~~~~ 386 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESNI--SLVVDE--------ADLEKALKALRREFGE 386 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCceE--EEEEeH--------HHHHHHHHHHHHHHHH
Confidence 45678888875 689999999999999999998754331 12222 255543 1222223333333322
Q ss_pred --CceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEEee
Q 014754 324 --PLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAAIG 375 (419)
Q Consensus 324 --~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~~ 375 (419)
...+.+... -..+.+.|. ++||+...+..+|++.|+||....-.
T Consensus 387 ~~~~~i~~~~~--------~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqg 435 (465)
T PRK06291 387 GLVRDVTFDKD--------VCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQG 435 (465)
T ss_pred hcCcceEEeCC--------EEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEec
Confidence 111222111 126788885 79999999999999999999866533
No 151
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=95.00 E-value=0.099 Score=46.12 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=47.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 22 VITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 22 ~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
-+.+.+.|+||.+.+++++++++|.||.-++.+. ||..++..|.+...+ +.+.|.+++++
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~----d~e~l~~~lks 65 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID----DFEKLLERLKS 65 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC----CHHHHHHHhhc
Confidence 4678899999999999999999999999999774 886555556663332 57777666665
No 152
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=94.95 E-value=0.19 Score=38.54 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=36.6
Q ss_pred EEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCC
Q 014754 252 LQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDG 301 (419)
Q Consensus 252 i~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g 301 (419)
+-+..+|+||-|+++...|+.+|+|+.+-.-.-. .+....=.|+++.+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~-~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPS-RRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCC-CCCCceEEEEEEEEc
Confidence 4455589999999999999999999987765531 233333457888877
No 153
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.75 E-value=2 Score=43.81 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=79.5
Q ss_pred CCeeEEEEEE---cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 247 PAHTLLQIHC---VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 247 ~~~tvi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
.+...|+|.+ .++||++.++..+|.+.|+++..-.-.. ..... .|+++. +..++..+.|......
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~--s~~~I--s~~V~~--------~d~~~a~~~L~~~~~~ 325 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP--SETSI--SLTVDE--------TDADEAVRALKDQSGA 325 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC--CCceE--EEEEeH--------HHHHHHHHHHHHHHHh
Confidence 3567788884 5789999999999999999997554321 11112 255542 1233333344333211
Q ss_pred -C-ceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCC
Q 014754 324 -P-LRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQ 398 (419)
Q Consensus 324 -~-~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~ 398 (419)
. ..+.+. +. -..+.+.|. ++||++..+.++|++.|+||.... + +. -.-.|.+
T Consensus 326 ~~~~~i~~~-~~-------~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~--~---s~---~~is~vv------- 382 (401)
T TIGR00656 326 AGLDRVEVE-EG-------LAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG--S---SE---TNISFLV------- 382 (401)
T ss_pred cCCceEEEe-CC-------eEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c---CC---CEEEEEE-------
Confidence 0 111111 11 126778885 789999999999999999998644 2 11 1223444
Q ss_pred CcchHHHHHHHHHHHHHH
Q 014754 399 LSSMVAREQIVDRVRRAL 416 (419)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l 416 (419)
+.++-.+.+..|.+++
T Consensus 383 --~~~d~~~av~~Lh~~f 398 (401)
T TIGR00656 383 --DEKDAEKAVRKLHEVF 398 (401)
T ss_pred --eHHHHHHHHHHHHHHH
Confidence 2345566677776654
No 154
>PRK06635 aspartate kinase; Reviewed
Probab=94.73 E-value=1.7 Score=44.41 Aligned_cols=108 Identities=15% Similarity=0.246 Sum_probs=67.0
Q ss_pred EEEEEE-ecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHcccccccc
Q 014754 109 YLLKLF-CLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAVLGESCISCE 187 (419)
Q Consensus 109 ~~i~v~-~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~~~~~~~~ 187 (419)
..|++. ..++||+++++..+|+++|+||.........++..--.|.|. .++.+...+.|.+. ....
T Consensus 263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~--------~~~~~~a~~~L~~~-~~~~---- 329 (404)
T PRK06635 263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP--------RDDLEKALELLEEV-KDEI---- 329 (404)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc--------HHHHHHHHHHHHHH-HHHc----
Confidence 345554 367899999999999999999995544322222333445443 22223333334331 1110
Q ss_pred cccCCCccccCCCcCCCcHHHHHHhhhhccchhhhhhhccCCCccCCCccEEEEeCCCCCCeeEEEEEE---cCcchHHH
Q 014754 188 LQLAGPECDCHQGVTSLSPVVAEELFRFELSDKETRLQALSPDMTKLKKANVVVDNSLSPAHTLLQIHC---VDHKGLLY 264 (419)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~rrl~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~v~n~~~~~~tvi~v~~---~DrpGLL~ 264 (419)
....+.+. ++..++++.| .|+||.++
T Consensus 330 -----------------------------------------------~~~~i~~~----~~ia~isvvG~~~~~~~g~~a 358 (404)
T PRK06635 330 -----------------------------------------------GAESVTYD----DDIAKVSVVGVGMRSHPGVAA 358 (404)
T ss_pred -----------------------------------------------CcceEEEc----CCeEEEEEECCCCCCCchHHH
Confidence 00123322 3466788876 68999999
Q ss_pred HHHHHHHhCCeEEEEE
Q 014754 265 DIMRTLKDCNMKISYG 280 (419)
Q Consensus 265 ~i~~~l~~~g~~I~~a 280 (419)
++.++|.+.|+||...
T Consensus 359 ~i~~~La~~~Ini~~i 374 (404)
T PRK06635 359 KMFEALAEEGINIQMI 374 (404)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999774
No 155
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.63 E-value=0.35 Score=36.80 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=40.6
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 111 LKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 111 i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
+.+..+|+||-|+++...|+++|+||.+....-..+....-.||+.-. +. .++...+.+-+.|.+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~-~~-~~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE-GH-IDDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE-CC-CCCHHHHHHHHHHHH
Confidence 345568999999999999999999999775543333233344555432 32 123344444455544
No 156
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.52 E-value=0.046 Score=43.17 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=43.9
Q ss_pred EEEEEecC-cccHHHHHHHHHHhCCceEEEEEEEeec--------CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754 110 LLKLFCLD-RKGLLHDVTQVLCELELSIQRVKVTTTP--------DGRVLDLFFITDNRELLHTKKRQDETCEQLHAV 178 (419)
Q Consensus 110 ~i~v~~~D-rpGLl~~i~~~l~~~glnI~~a~i~T~~--------~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~ 178 (419)
+|+|.|.| ..|++++++++|+++|+||.+.+-.+.. .+...-.|.|..+. ...+.|++.|.+.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~------~~~~~lr~~L~~l 72 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP------ADLEALRAALLEL 72 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC------CCHHHHHHHHHHH
Confidence 47999999 9999999999999999999954442110 12344556665322 2356788887765
No 157
>PRK06635 aspartate kinase; Reviewed
Probab=94.47 E-value=1.2 Score=45.50 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=65.7
Q ss_pred CeeEEEEEE-cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc--CC
Q 014754 248 AHTLLQIHC-VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML--HP 324 (419)
Q Consensus 248 ~~tvi~v~~-~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~--~~ 324 (419)
+...|++.+ .++||++.++..+|.+.|++|.....+. +.++...=.|.++. +..+...+.|..... ..
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~-~~~~~~~is~~v~~--------~~~~~a~~~L~~~~~~~~~ 331 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNV-SEDGKTDITFTVPR--------DDLEKALELLEEVKDEIGA 331 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC-CCCCceeEEEEEcH--------HHHHHHHHHHHHHHHHcCc
Confidence 345555554 5689999999999999999999654432 11111221255532 222333333333110 00
Q ss_pred ceEEEecCCCCcccccceeEEEee---CCCCccHHHHHHHHHHcCceEEEEE
Q 014754 325 LRVIIANRGPDTELLVANPVELCG---KGRPRVFYDVTLALKVLGICVFSAA 373 (419)
Q Consensus 325 ~~v~i~~~~~~~~~~~~~~~~v~g---~DRpGil~~vt~~l~~~~v~I~~~~ 373 (419)
..+.+. .. ...+.+.| .++||++.++.++|++.|+||....
T Consensus 332 ~~i~~~-~~-------ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 332 ESVTYD-DD-------IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ceEEEc-CC-------eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 112111 11 23677777 5899999999999999999998875
No 158
>PRK08210 aspartate kinase I; Reviewed
Probab=94.45 E-value=1.7 Score=44.54 Aligned_cols=100 Identities=17% Similarity=0.308 Sum_probs=66.6
Q ss_pred CCeeEEEEEEcCc-chHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCc
Q 014754 247 PAHTLLQIHCVDH-KGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPL 325 (419)
Q Consensus 247 ~~~tvi~v~~~Dr-pGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~ 325 (419)
.+...++|.+.+. ||.+.+|..+|.+.|++|.....+. +.. .|.++. +..+++.+.|.. +. .
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~----~~i--s~~v~~--------~~~~~a~~~l~~-~~--~ 331 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP----TEV--VFTVSD--------EDSEKAKEILEN-LG--L 331 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC----ceE--EEEEcH--------HHHHHHHHHHHH-hC--C
Confidence 4566778877665 9999999999999999998874431 212 255532 223444444332 21 1
Q ss_pred eEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEE
Q 014754 326 RVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFS 371 (419)
Q Consensus 326 ~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~ 371 (419)
.+.+... -..+.+.|. ++||++..+..+|.+.|+||..
T Consensus 332 ~v~~~~~--------~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 KPSVREN--------CAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred cEEEeCC--------cEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 2222111 126777785 8999999999999999999975
No 159
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.43 E-value=0.039 Score=43.58 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=46.0
Q ss_pred EEEEEcCC-CCChHHHHHHHHHhCCceEEEEEeee-----c-----CcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754 22 VITVNCPD-KTGLGCDICRIILDFGLYITKGDIST-----D-----GIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC 87 (419)
Q Consensus 22 ~v~V~~~D-rpgL~~~i~~~l~~~~lnI~~A~i~t-----d-----G~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L 87 (419)
.|||+++| ..|++++++++|+++|+||.+-+-.+ . ... ...|.|..+. .+.+.+++.|.+.-
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~-~~e~~v~~~~---~~~~~lr~~L~~la 73 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKA-CVEFSVRGQP---ADLEALRAALLELA 73 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcE-EEEEEEeCCC---CCHHHHHHHHHHHh
Confidence 37999999 99999999999999999998755211 1 232 4677776444 36788888887643
No 160
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.37 E-value=0.32 Score=37.40 Aligned_cols=51 Identities=4% Similarity=-0.011 Sum_probs=37.5
Q ss_pred EEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCc
Q 014754 252 LQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKK 303 (419)
Q Consensus 252 i~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~ 303 (419)
+-+..+|+||-|+++...|+.+|+|+.+-.-... .+....=.||++.+|..
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~-~~~~~~y~F~id~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKS-KRRSSEFEIFVDCECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccC-CCCCceEEEEEEEEcCH
Confidence 3444589999999999999999999988776531 23333345788887754
No 161
>PRK11899 prephenate dehydratase; Provisional
Probab=94.24 E-value=0.4 Score=46.61 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=41.2
Q ss_pred eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCc
Q 014754 249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKK 303 (419)
Q Consensus 249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~ 303 (419)
-|.|-+..+|+||.|+++..+|+++|+|+.+-.-.- +.+....=+||++.+|..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP-~~~~~~~Y~F~id~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYM-VGGSFTATQFYADIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeee-cCCCCceEEEEEEEECCC
Confidence 466666778999999999999999999998766553 133334446789988854
No 162
>PLN02551 aspartokinase
Probab=94.05 E-value=2.3 Score=45.11 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=70.3
Q ss_pred CCCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754 246 SPAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML 322 (419)
Q Consensus 246 ~~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~ 322 (419)
..+.++|+|.+. +.+|++.++...|.++|++|..-. + ..... .|.++.+. +...+.+++....|...+.
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--s--Se~sI--s~~v~~~~--~~~~~~i~~~l~~l~~el~ 434 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--T--SEVSI--SLTLDPSK--LWSRELIQQELDHLVEELE 434 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--c--cCCEE--EEEEehhH--hhhhhhHHHHHHHHHHHhh
Confidence 345688999876 589999999999999999998763 2 12222 26665421 1111111111112222333
Q ss_pred CCceEEEecCCCCcccccceeEEEeeC--CCCccHHHHHHHHHHcCceEEEEEee
Q 014754 323 HPLRVIIANRGPDTELLVANPVELCGK--GRPRVFYDVTLALKVLGICVFSAAIG 375 (419)
Q Consensus 323 ~~~~v~i~~~~~~~~~~~~~~~~v~g~--DRpGil~~vt~~l~~~~v~I~~~~~~ 375 (419)
+...+.+... -..+.+.|. .+||++..+..+|++.||||....-.
T Consensus 435 ~~~~V~v~~~--------vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqg 481 (521)
T PLN02551 435 KIAVVNLLQG--------RSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQG 481 (521)
T ss_pred cCCeEEEeCC--------EEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEec
Confidence 3222332211 125677765 68999999999999999999887744
No 163
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.00 E-value=0.29 Score=53.69 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=49.7
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeec-CCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP-DGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~-~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
.....|.|.+.||+|+|++|+.+++..++||.+..+.+.. ++.+.-.|.|.-. +-+.+..|...|+.
T Consensus 664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~ 731 (743)
T PRK10872 664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ 731 (743)
T ss_pred eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999987543 5665555555322 34455566555554
No 164
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=93.98 E-value=0.44 Score=35.37 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=38.9
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEEecCCCCcccHHHHHHHHHhhC
Q 014754 29 DKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLEC 87 (419)
Q Consensus 29 DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L 87 (419)
|+||.+.+++++|...|.||.+-.+.. ++...--++.|...+ . ..+.|...|++..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~-~--~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD-R--EIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C-C--HHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc-h--hHHHHHHHHhccC
Confidence 789999999999999999999999875 444332344443322 2 5666777777654
No 165
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.96 E-value=0.23 Score=50.52 Aligned_cols=67 Identities=7% Similarity=-0.001 Sum_probs=49.3
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~ 414 (419)
+++-+.-.|+||.|+++-..|+.+|||+.++++.. ..+.. -.|.||+ |.+|..-+ +. .+..++.|+.
T Consensus 298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP--~~~~~-~~Y~Ffi-d~eg~~~d-~~-~~~aL~~l~~ 364 (386)
T PRK10622 298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESRP--IHGNP-WEEMFYL-DVQANLRS-AE-MQKALKELGE 364 (386)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeee--cCCCC-ceEEEEE-EEeCCCCC-HH-HHHHHHHHHH
Confidence 34555557999999999999999999999999985 33443 6899999 87884433 33 3445555554
No 166
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.84 E-value=0.41 Score=52.58 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=52.9
Q ss_pred EEEEeCC-CCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCC-CCeeEEEEEEecCCCcCCCHHHHHHHHH
Q 014754 238 NVVVDNS-LSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQ-GYRDLDLFIQQKDGKKIVDPEKQSAICS 315 (419)
Q Consensus 238 ~V~v~n~-~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~-g~~~~D~F~v~~~g~~~~d~~~~~~l~~ 315 (419)
.|.++.. .......|.|.+.||+|||.+|+.++++.++||....+.+. . ++.+.-.|.+.. .+-+++..|..
T Consensus 654 ~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~-~~~~~~~~~~~ieV-----~~~~~L~~l~~ 727 (743)
T PRK10872 654 DAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSD-TKQQLATIDMTIEI-----YNLQVLGRVLG 727 (743)
T ss_pred EeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCCEEEEEEEEEE-----CCHHHHHHHHH
Confidence 3555543 22345789999999999999999999999999999998752 2 343333344432 34567788877
Q ss_pred HHH
Q 014754 316 RLK 318 (419)
Q Consensus 316 ~L~ 318 (419)
.|.
T Consensus 728 ~L~ 730 (743)
T PRK10872 728 KLN 730 (743)
T ss_pred HHh
Confidence 764
No 167
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.61 E-value=0.36 Score=52.87 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=48.3
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
..+.|.|.+.||+|+|++|+.+++..++||.++++.+..++.+.-.|.+.-. +-+.+..|-..|+.
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV 690 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 4668999999999999999999999999999999876444555445544322 23455555555554
No 168
>PRK07334 threonine dehydratase; Provisional
Probab=93.59 E-value=0.45 Score=48.73 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=47.6
Q ss_pred CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecC---CCCeeEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 014754 248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNS---QGYRDLDLFIQQKDGKKIVDPEKQSAICSRLK 318 (419)
Q Consensus 248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t---~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~ 318 (419)
..+-|.|.+.||||+|.+|+.+|.+.++||.+....+.. .++.+.=.|.+.. .+.++++.+.+.|+
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-----~d~~~L~~vi~~Lr 393 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-----RDAAHLQEVIAALR 393 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-----CCHHHHHHHHHHHH
Confidence 347899999999999999999999999999999887420 1222222233332 34577888888775
No 169
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=93.56 E-value=0.39 Score=44.58 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=40.6
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEE
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLD 392 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~ 392 (419)
+.+-+.-.||||++..|+..|.++||||-.+.+.+...++. |.....++
T Consensus 149 ~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~--Ai~vl~vD 197 (208)
T TIGR00719 149 PAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNI--ALLTIEID 197 (208)
T ss_pred cEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCE--EEEEEEeC
Confidence 36667779999999999999999999999999998555444 77777773
No 170
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.45 E-value=0.28 Score=47.38 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=44.5
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCc
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLS 400 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~ 400 (419)
+.+-+.-.|+||-|+++-..|+.+|||..+++++. ..+.. -.+.||+ |.+|..-+
T Consensus 195 Tsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP--~k~~~-~~Y~F~i-D~eg~~~~ 249 (279)
T COG0077 195 TSLIFSVPNKPGALYKALGVFAKRGINLTKIESRP--LKTGL-GEYLFFI-DIEGHIDD 249 (279)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecc--cCCCC-eeEEEEE-EEecCcCc
Confidence 35555556999999999999999999999999985 44444 6899999 87777655
No 171
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=93.45 E-value=0.34 Score=45.02 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=39.4
Q ss_pred CCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeE
Q 014754 246 SPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDL 292 (419)
Q Consensus 246 ~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~ 292 (419)
.+....+-+.-.||||.+..++..|.++|+||...++.+...|+.+.
T Consensus 145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai 191 (208)
T TIGR00719 145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIAL 191 (208)
T ss_pred cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEE
Confidence 34556777788999999999999999999999999999854566555
No 172
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.40 E-value=0.6 Score=34.93 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=38.7
Q ss_pred EEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 112 KLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 112 ~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
.|.-+||||-|.+++.+++. |.||....-... +.....+++...-. +++..+++.+.|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~-~~~~~~v~v~ie~~----~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQ-GGDEARVLVGIQVP----DREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC-CCCceEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 56789999999999999999 999997655422 21222333333221 34555666666654
No 173
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=93.37 E-value=2.9 Score=42.73 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=68.2
Q ss_pred CcEEEEEE---cCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754 19 EPHVITVN---CPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY 95 (419)
Q Consensus 19 ~~~~v~V~---~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~ 95 (419)
+...|+|. .++++|+++++...|.+++.||.--....... --.|.|... +.++..+.|.+.+....
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~--~Is~~V~~~-----d~~~a~~~L~~~~~~~~---- 327 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSET--SISLTVDET-----DADEAVRALKDQSGAAG---- 327 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCc--eEEEEEeHH-----HHHHHHHHHHHHHHhcC----
Confidence 45677888 57899999999999999999997433221112 134555221 23333344544331100
Q ss_pred cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEE
Q 014754 96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQR 138 (419)
Q Consensus 96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~ 138 (419)
............|.|++. ++||+++++..+|++.|+||..
T Consensus 328 ---~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 328 ---LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred ---CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 000012235778888885 7899999999999999999984
No 174
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.99 E-value=0.65 Score=50.94 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=52.1
Q ss_pred EEEeCC-CCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHH
Q 014754 239 VVVDNS-LSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRL 317 (419)
Q Consensus 239 V~v~n~-~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L 317 (419)
|.++.. .....+.|.|.+.||+|+|.+|+.++++.++||.+....+. .+..+.-.|-+.. .+.+++..|...|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV-----~~~~~L~~i~~~L 688 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTA-----RDRVHLANIMRKI 688 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEE-----CCHHHHHHHHHHH
Confidence 555543 22345789999999999999999999999999999998752 3333332343332 3356778887776
Q ss_pred H
Q 014754 318 K 318 (419)
Q Consensus 318 ~ 318 (419)
.
T Consensus 689 r 689 (702)
T PRK11092 689 R 689 (702)
T ss_pred h
Confidence 4
No 175
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.97 E-value=2.7 Score=47.10 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=71.0
Q ss_pred CCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 247 PAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 247 ~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
.+.+.|+|.+. ++||++.++..+|.++|++|....-++ ..... .|.++.+- . ....+.|.+.+...+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sI--sf~V~~~d--~--~~av~~L~~~f~~el~~ 384 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSI--SFCVPQSD--A--AKAKRALEEEFALELKE 384 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceE--EEEEeHHH--H--HHHHHHHHHHHHHHhcc
Confidence 56788999876 589999999999999999997665432 12222 25664310 0 11223343333222221
Q ss_pred -C-ceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEEee
Q 014754 324 -P-LRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAAIG 375 (419)
Q Consensus 324 -~-~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~~ 375 (419)
. -.+.+... -..+.+.|. ++||+...+..+|.+.|+||....-.
T Consensus 385 ~~~~~i~~~~~--------valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqg 433 (819)
T PRK09436 385 GLLEPLEVEEN--------LAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQG 433 (819)
T ss_pred CCcceEEEeCC--------EEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEec
Confidence 1 11222111 226778885 78999999999999999999877633
No 176
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=92.83 E-value=0.81 Score=44.29 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=43.3
Q ss_pred CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEE-EEEEecCCCc
Q 014754 248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLD-LFIQQKDGKK 303 (419)
Q Consensus 248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D-~F~v~~~g~~ 303 (419)
..|.|-+..+|+||-|+++..+|+.+|+|..+-.-. ..+....+ +||+|.+|..
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESR--P~k~~~~~Y~F~iD~eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESR--PLKTGLGEYLFFIDIEGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeec--ccCCCCeeEEEEEEEecCc
Confidence 578888888899999999999999999999877765 33444444 5688988865
No 177
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=92.76 E-value=0.54 Score=35.01 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=35.1
Q ss_pred CCeEEEEEEec----CcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEc
Q 014754 106 SPVYLLKLFCL----DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157 (419)
Q Consensus 106 ~~~~~i~v~~~----DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~ 157 (419)
.....|+|.++ |.||+++++++.|++.|+||.... |.. -|.|.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~~----~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SEI----SISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ESS----EEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Eee----eEEEEEeH
Confidence 35678889888 799999999999999999998555 322 26676754
No 178
>PRK09034 aspartate kinase; Reviewed
Probab=92.65 E-value=3.6 Score=42.90 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCeeEEEEEE---cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 247 PAHTLLQIHC---VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 247 ~~~tvi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
.+.+.|++.+ .+++|+++++...|.++|++|..- ++ ...... |.++.+ .+. ...+..+.+.|...+.
T Consensus 306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~s--s~~sis--~~v~~~--~~~-~a~~~~l~~el~~~~~- 375 (454)
T PRK09034 306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PS--GIDDLS--IIIRER--QLT-PKKEDEILAEIKQELN- 375 (454)
T ss_pred CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cC--CCcEEE--EEEeHH--Hhh-HHHHHHHHHHHHHhhC-
Confidence 3467788875 578999999999999999999875 32 222233 666431 111 0111333333332221
Q ss_pred CceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEEee
Q 014754 324 PLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAAIG 375 (419)
Q Consensus 324 ~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~~ 375 (419)
...+.+... -..+.+.|. ++||++..+..+|++.|+||......
T Consensus 376 ~~~I~~~~~--------va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~ 422 (454)
T PRK09034 376 PDELEIEHD--------LAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQG 422 (454)
T ss_pred CceEEEeCC--------EEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 112222111 226777764 78999999999999999999887643
No 179
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.59 E-value=0.62 Score=51.03 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=47.7
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
..+.|.|.+.||+|+|++|+.+++..++||.+.++.+..++.+.-.|.|.-. +-..+..|-..|+.
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-----NYKHLLKIMLKIKT 674 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999976444555444444322 23445555555443
No 180
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=92.51 E-value=0.38 Score=35.84 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=26.6
Q ss_pred eEEEeeC----CCCccHHHHHHHHHHcCceEEEEE
Q 014754 343 PVELCGK----GRPRVFYDVTLALKVLGICVFSAA 373 (419)
Q Consensus 343 ~~~v~g~----DRpGil~~vt~~l~~~~v~I~~~~ 373 (419)
.+.+.|. |.||+++.++..|+++||||+...
T Consensus 8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 5666665 799999999999999999999888
No 181
>PRK09181 aspartate kinase; Validated
Probab=92.10 E-value=8 Score=40.57 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=70.7
Q ss_pred CCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 247 PAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 247 ~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
.+.+.|+|.+. +.+|++.++..+|.++|++|. .+++ ....+ .|.++.+ ...++++.+.|...+..
T Consensus 327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~s--s~~si--s~~v~~~------~~~~~~~~~~L~~~~~~ 394 (475)
T PRK09181 327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKAT--NANTI--THYLWGS------LKTLKRVIAELEKRYPN 394 (475)
T ss_pred CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEe--cCcEE--EEEEcCC------hHHHHHHHHHHHHhcCC
Confidence 46788888765 689999999999999999998 3442 12222 3666432 12334454555443331
Q ss_pred CceEEEecCCCCcccccceeEEEeeCC--CCccHHHHHHHHHHcCceEEEEEee
Q 014754 324 PLRVIIANRGPDTELLVANPVELCGKG--RPRVFYDVTLALKVLGICVFSAAIG 375 (419)
Q Consensus 324 ~~~v~i~~~~~~~~~~~~~~~~v~g~D--RpGil~~vt~~l~~~~v~I~~~~~~ 375 (419)
..+.. .+ -..+.++|.. +||+...+..+|++.||||......
T Consensus 395 -~~i~~--~~-------~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 395 -AEVTV--RK-------VAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred -ceEEE--CC-------ceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence 12221 11 1267777754 8999999999999999999877754
No 182
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.98 E-value=1.1 Score=49.21 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=51.4
Q ss_pred EEEeCC-CCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHH
Q 014754 239 VVVDNS-LSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRL 317 (419)
Q Consensus 239 V~v~n~-~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L 317 (419)
|.++.. .....+.|.|.+.||+|+|.+|+.++++.++||.+..+.+. .++.+.-.|-+. +.+-+++..|...|
T Consensus 599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ie-----V~~~~~L~~ii~~L 672 (683)
T TIGR00691 599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVE-----IKNYKHLLKIMLKI 672 (683)
T ss_pred EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence 455443 22456789999999999999999999999999999999752 223222123232 23456778777776
Q ss_pred H
Q 014754 318 K 318 (419)
Q Consensus 318 ~ 318 (419)
.
T Consensus 673 ~ 673 (683)
T TIGR00691 673 K 673 (683)
T ss_pred h
Confidence 4
No 183
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.96 E-value=1 Score=37.76 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=38.8
Q ss_pred eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCee-EEEEEEecCCC
Q 014754 249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRD-LDLFIQQKDGK 302 (419)
Q Consensus 249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~-~D~F~v~~~g~ 302 (419)
.|-+-+..+|+||-|+++...|+++|+|+.+-.-.. ....- .=.||++.+|.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP--~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRP--SRKEGGDLEVLVRCEVH 93 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCc--CCCCCceEEEEEEEEeC
Confidence 456666669999999999999999999998876553 33322 22478888774
No 184
>PRK06291 aspartate kinase; Provisional
Probab=91.95 E-value=6.2 Score=41.24 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=70.4
Q ss_pred CcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754 19 EPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY 95 (419)
Q Consensus 19 ~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~ 95 (419)
+...|+|.+. +.+|+++++.++|+++|+||.-..-.+.... -.|.|... +.+...+.|.+.+.....
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~~-----d~~~av~~L~~~~~~~~~--- 389 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDEA-----DLEKALKALRREFGEGLV--- 389 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeHH-----HHHHHHHHHHHHHHHhcC---
Confidence 4567788764 7899999999999999999975432233332 35555322 222333445444322110
Q ss_pred cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 014754 96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
..-........|.|+|. +++|+.+++..+|++.|+||.-...
T Consensus 390 ----~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq 434 (465)
T PRK06291 390 ----RDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ 434 (465)
T ss_pred ----cceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence 00012235678899885 7899999999999999999984433
No 185
>PRK06382 threonine dehydratase; Provisional
Probab=91.91 E-value=1.1 Score=46.06 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=47.6
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE----eecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT----TTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~----T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
....+.++|.-+|+||-|++++..|.++|+||.+.... ....+...-+|.|... +++..+.|.+.|++
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 44688999999999999999999999999999876653 2223455555555432 23344456555554
No 186
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.76 E-value=0.61 Score=41.27 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=34.9
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCe
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGR 148 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~ 148 (419)
-+.+.+.++||.|.++++.++++|.||..++.+...+|.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~ 42 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGE 42 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCc
Confidence 478889999999999999999999999999998765654
No 187
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.67 E-value=1.1 Score=48.81 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=54.1
Q ss_pred EEEEeCC-CCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHH
Q 014754 238 NVVVDNS-LSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSR 316 (419)
Q Consensus 238 ~V~v~n~-~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~ 316 (419)
.|.++.. .....+-|.|.+.||+|||.+|+++|++.++||......+ .++++.++.+. . .+.+-.++..|..+
T Consensus 615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~--~~~~~~~~~~~-i---~v~n~~~L~~i~~~ 688 (701)
T COG0317 615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRS--DKDQFATMQFT-I---EVKNLNHLGRVLAR 688 (701)
T ss_pred EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccc--cCCceEEEEEE-E---EECcHHHHHHHHHH
Confidence 3555555 3567789999999999999999999999999999999885 34444443322 1 12334677777776
Q ss_pred HH
Q 014754 317 LK 318 (419)
Q Consensus 317 L~ 318 (419)
|.
T Consensus 689 l~ 690 (701)
T COG0317 689 LK 690 (701)
T ss_pred Hh
Confidence 63
No 188
>PRK11898 prephenate dehydratase; Provisional
Probab=91.63 E-value=0.63 Score=45.39 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=47.6
Q ss_pred eEEEee-CCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754 343 PVELCG-KGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA 415 (419)
Q Consensus 343 ~~~v~g-~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~ 415 (419)
.+-+.- .++||-|+++-..|+++|||+.+++++- ..+.. -.+.||+ |.+|.. .++ .-+++++.|++.
T Consensus 198 slif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP--~~~~~-~~y~F~v-d~eg~~-~~~-~~~~al~~L~~~ 265 (283)
T PRK11898 198 SLVLTLPNNLPGALYKALSEFAWRGINLTRIESRP--TKTGL-GTYFFFI-DVEGHI-DDV-LVAEALKELEAL 265 (283)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHCCCCeeeEeccc--CCCCC-ccEEEEE-EEEccC-CCH-HHHHHHHHHHHh
Confidence 333444 3579999999999999999999999985 33343 5699999 777753 323 345566666653
No 189
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=91.53 E-value=13 Score=38.54 Aligned_cols=107 Identities=20% Similarity=0.235 Sum_probs=65.9
Q ss_pred CCeeEEEEEEcCc--chHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc-C
Q 014754 247 PAHTLLQIHCVDH--KGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML-H 323 (419)
Q Consensus 247 ~~~tvi~v~~~Dr--pGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~-~ 323 (419)
.+...|+|.+.+- +|++.++..+|.++|++|....-.+ ..... .|.++.+ ..++..+.|..... .
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~--se~sI--s~~I~~~--------~~~~a~~~L~~~~~~~ 367 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSS--SETSI--SFTVDKE--------DADQAKTLLKSELNLS 367 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC--CCceE--EEEEEHH--------HHHHHHHHHHHHHHhc
Confidence 4567788877553 7999999999999999997765321 11222 2555431 11222222222111 1
Q ss_pred Cc-eEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754 324 PL-RVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAA 373 (419)
Q Consensus 324 ~~-~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~ 373 (419)
.. .+.+. +. -..+.+.|. ++||++.++...|++.|+||....
T Consensus 368 ~~~~I~~~-~~-------~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 368 ALSSVEVE-KG-------LAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CcceEEEc-CC-------eEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 11 12211 11 236777664 789999999999999999998876
No 190
>PRK09084 aspartate kinase III; Validated
Probab=91.48 E-value=10 Score=39.41 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=66.0
Q ss_pred CCCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754 246 SPAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML 322 (419)
Q Consensus 246 ~~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~ 322 (419)
..+..+|+|.+. +.+|++.++..+|.++|++|..-..+ . ... .|.++.+.. . ......+...+.+.+.
T Consensus 303 ~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ss---e-~sI--s~~i~~~~~--~-~~~~~~~~~~l~~el~ 373 (448)
T PRK09084 303 RRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTS---E-VSV--SLTLDTTGS--T-STGDTLLTQALLTELS 373 (448)
T ss_pred eCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEecc---C-cEE--EEEEechhh--h-hhhhHHHHHHHHHHHh
Confidence 346778899875 68999999999999999999876522 1 222 366653211 0 0111223333334444
Q ss_pred CCceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceE
Q 014754 323 HPLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICV 369 (419)
Q Consensus 323 ~~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I 369 (419)
....+.+... -..+.+.|. ++||+...+..+|.+.++.+
T Consensus 374 ~~~~i~~~~~--------va~IsvvG~gm~~~~gv~arif~aL~~~nI~~ 415 (448)
T PRK09084 374 QLCRVEVEEG--------LALVALIGNNLSKACGVAKRVFGVLEPFNIRM 415 (448)
T ss_pred cCCeEEEECC--------eEEEEEECCCcccCcChHHHHHHHHHhCCeEE
Confidence 3223333211 126788886 79999999999998754443
No 191
>PRK09034 aspartate kinase; Reviewed
Probab=91.24 E-value=7.9 Score=40.35 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=69.0
Q ss_pred CcEEEEEEc---CCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754 19 EPHVITVNC---PDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY 95 (419)
Q Consensus 19 ~~~~v~V~~---~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~ 95 (419)
+.+.|++.+ ++++|+.+++...|+++|+||.-- .+... --.|.|...+-.......+.+.|+..++...
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~ss~~--sis~~v~~~~~~~a~~~~l~~el~~~~~~~~---- 378 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PSGID--DLSIIIRERQLTPKKEDEILAEIKQELNPDE---- 378 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cCCCc--EEEEEEeHHHhhHHHHHHHHHHHHHhhCCce----
Confidence 345666664 678999999999999999998864 22222 2456664332110011334344443331100
Q ss_pred cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 014754 96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
-....+...|.+++. +.||+++++..+|+++|+||.-...
T Consensus 379 ------I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 379 ------LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421 (454)
T ss_pred ------EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 012235778888764 7899999999999999999985543
No 192
>PRK09181 aspartate kinase; Validated
Probab=91.24 E-value=9.6 Score=39.99 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=70.9
Q ss_pred CcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754 19 EPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY 95 (419)
Q Consensus 19 ~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~ 95 (419)
+.+.|+|-+. +.+|+.+++...|+++|++|. -+.+... -..|.|... . ...+++.+.|++.+....
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~--sis~~v~~~-~--~~~~~~~~~L~~~~~~~~---- 396 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN--TITHYLWGS-L--KTLKRVIAELEKRYPNAE---- 396 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc--EEEEEEcCC-h--HHHHHHHHHHHHhcCCce----
Confidence 4566677543 789999999999999999997 2333222 245666433 1 134555566665552211
Q ss_pred cccCCCCCCCCCeEEEEEEecC--cccHHHHHHHHHHhCCceEEEEEE
Q 014754 96 FNQLSTRPTCSPVYLLKLFCLD--RKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 96 ~~~~~~~~~~~~~~~i~v~~~D--rpGLl~~i~~~l~~~glnI~~a~i 141 (419)
. . ..+...|.++|.. +||+.+++..+|++.|+||..-..
T Consensus 397 ----i--~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 397 ----V--T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred ----E--E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 0 1 1457789998865 899999999999999999984433
No 193
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=91.20 E-value=12 Score=39.00 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=69.4
Q ss_pred CCCeeEEEEEEcC---cchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754 246 SPAHTLLQIHCVD---HKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML 322 (419)
Q Consensus 246 ~~~~tvi~v~~~D---rpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~ 322 (419)
..+.+.|.|.+.. ++|.+.++...|.++|+++..-.-... . .. =.|.++. ...+.....|.+...
T Consensus 304 ~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~-~-~~--i~~~v~~--------~~~~~a~~~l~~~~~ 371 (447)
T COG0527 304 DDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSIS-E-VS--ISFTVPE--------SDAPRALRALLEEKL 371 (447)
T ss_pred CCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccC-C-Ce--EEEEEch--------hhHHHHHHHHHHHHh
Confidence 3577888888765 569999999999999999976543320 1 11 2365532 112222233333332
Q ss_pred CCc-eEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEEe
Q 014754 323 HPL-RVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAAI 374 (419)
Q Consensus 323 ~~~-~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~ 374 (419)
... .+.+... -..+.+.|. ..||+...+..+|++.++||....+
T Consensus 372 ~~~~~v~~~~~--------~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~iss 419 (447)
T COG0527 372 ELLAEVEVEEG--------LALVSIVGAGMRSNPGVAARIFQALAEENINIIMISS 419 (447)
T ss_pred hhcceEEeeCC--------eeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEc
Confidence 221 2222111 126788885 7799999999999999999998883
No 194
>PRK08210 aspartate kinase I; Reviewed
Probab=91.19 E-value=8.7 Score=39.26 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=66.7
Q ss_pred CcEEEEEEcCCC-CChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccccc
Q 014754 19 EPHVITVNCPDK-TGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFN 97 (419)
Q Consensus 19 ~~~~v~V~~~Dr-pgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~~ 97 (419)
+...|+|.+.+. ||.+++|...|+++|.||.-...+.+ . -+|.+... +.++..+.|++.- ..
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~-~---is~~v~~~-----~~~~a~~~l~~~~--~~------ 332 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT-E---VVFTVSDE-----DSEKAKEILENLG--LK------ 332 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc-e---EEEEEcHH-----HHHHHHHHHHHhC--Cc------
Confidence 456777777555 99999999999999999987643322 1 24555321 2333434444421 00
Q ss_pred cCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEE
Q 014754 98 QLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQR 138 (419)
Q Consensus 98 ~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~ 138 (419)
.....+...|.|++. ++||+++++..+|++.|+||..
T Consensus 333 ----v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 333 ----PSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred ----EEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 012235677888875 7899999999999999999974
No 195
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.86 E-value=1.4 Score=32.87 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=41.9
Q ss_pred EEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHH
Q 014754 253 QIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKM 319 (419)
Q Consensus 253 ~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~ 319 (419)
.|.-+||||=|..+..++.. |.||..-.-.. .+.....+++. ... ++++.++|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~--~~~~~~~v~v~ie~~-----~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRN--QGGDEARVLVGIQVP-----DREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc--CCCCceEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 56779999999999999999 99998877664 23333444533 332 35677888887753
No 196
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=90.47 E-value=0.92 Score=46.60 Aligned_cols=68 Identities=9% Similarity=0.118 Sum_probs=51.4
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHH
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRAL 416 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l 416 (419)
+++-+.-.|+||-|+++-..|+++|||+.++++.. ..+.. -.+.||| |.+|.. . ..-+.+++.|++..
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRP--sk~~~-~eY~FFV-D~eg~~-~--~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRP--SKTHP-GEYEFFV-EFDEAS-D--RKLEGVIEHLRQKA 84 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEeccc--CCCCC-ccEEEEE-EEecCc-c--HHHHHHHHHHHHhc
Confidence 35555668999999999999999999999999985 33333 4688999 767754 2 34577788887654
No 197
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=90.40 E-value=2 Score=43.85 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=41.4
Q ss_pred CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCc
Q 014754 248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKK 303 (419)
Q Consensus 248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~ 303 (419)
..|.+-+..+|+||.|+++...|+..|+|+.+-.-.- +.+.-..=+||++.+|..
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP-~~~~~~~Y~Ffid~eg~~ 350 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRP-IHGNPWEEMFYLDVQANL 350 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeee-cCCCCceEEEEEEEeCCC
Confidence 3566666668999999999999999999998766553 234444456789988853
No 198
>PLN02317 arogenate dehydratase
Probab=89.85 E-value=1.4 Score=44.72 Aligned_cols=70 Identities=9% Similarity=0.094 Sum_probs=48.4
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccC-----------ceeeEEEEEEEcCCCCCCcchHHHHHHHH
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSE-----------REWEIYRFLLDENCKFQLSSMVAREQIVD 410 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~-----------~~~~~~~f~~~d~~g~~~~~~~~~~~~~~ 410 (419)
+.+-+.-.|+||.|+++-.+|+.+|||+.+++++..-... ...-.+.||+ |.+|..-+ +.. +..++
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d-~~~-~~aL~ 360 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMAD-PRA-QNALA 360 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCC-HHH-HHHHH
Confidence 4555555789999999999999999999999997522221 0013689999 87775433 333 44556
Q ss_pred HHHH
Q 014754 411 RVRR 414 (419)
Q Consensus 411 ~~~~ 414 (419)
.|+.
T Consensus 361 ~L~~ 364 (382)
T PLN02317 361 HLQE 364 (382)
T ss_pred HHHH
Confidence 6654
No 199
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.69 E-value=0.72 Score=47.38 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=41.1
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEE
Q 014754 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFI 155 (419)
Q Consensus 107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V 155 (419)
....|.+.-.|+||.++.|+..|+++|+||...+..+ .++++.-+|-+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~ 384 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDV 384 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEe
Confidence 5678888999999999999999999999999888874 56777666644
No 200
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.51 E-value=3.6 Score=32.20 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=35.9
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
.+.|.-+|+||=|++++.+|+ +.||....-.....+.+.-.+.+...++ ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc----HHHHHHHHHHHHH
Confidence 477888999999999999999 5666643332222233322232322211 3445566666554
No 201
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=89.47 E-value=1.8 Score=47.16 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=39.1
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEE
Q 014754 105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDL 152 (419)
Q Consensus 105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~ 152 (419)
....+.|.|.+.||+|+|++|+.+|+..++||.+....+. ++....+
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~ 670 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATM 670 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEE
Confidence 3467899999999999999999999999999999888764 4444343
No 202
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=89.42 E-value=1.6 Score=38.67 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=48.5
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCe-EEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGR-VLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~-~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~ 180 (419)
...+.+.-.|.||.|+++++.|++.|+||.+..+.-+..+. .--++.+. . ++...+++...|.++.+
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~-g-----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS-G-----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc-C-----CcchHHHHHHHHHhhcc
Confidence 45688888999999999999999999999998886554433 33333332 1 23456778888887763
No 203
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=88.99 E-value=1.2 Score=46.06 Aligned_cols=67 Identities=6% Similarity=0.024 Sum_probs=49.1
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA 415 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~ 415 (419)
+++-+.-.|+||-|+++-..|+++|||+.++++.. ..+..|..+.||| |.+|.. ..-+++++.|+..
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRP--sk~~~~e~Y~FfV-D~Eg~~----~~l~~aL~~Lk~~ 98 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRD--SKDGTSKTMDVLV-DVELFH----YGLQEAMDLLKSG 98 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCc--CCCCCCccEEEEE-EEEcCH----HHHHHHHHHHHHh
Confidence 45666668999999999999999999999999986 3333323389999 666543 2346666777653
No 204
>PLN02551 aspartokinase
Probab=88.46 E-value=15 Score=39.05 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=68.1
Q ss_pred CcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754 19 EPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY 95 (419)
Q Consensus 19 ~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~ 95 (419)
+.+.|+|.+. +.+|.++++...|+++|++|.-- ++... --.|.|...+-. ..+.+++.++..+.... ..
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe~--sIs~~v~~~~~~--~~~~i~~~l~~l~~el~-~~- 436 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEV--SISLTLDPSKLW--SRELIQQELDHLVEELE-KI- 436 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccCC--EEEEEEehhHhh--hhhhHHHHHHHHHHHhh-cC-
Confidence 3467777654 68999999999999999998754 23222 235666433211 12223323322211100 00
Q ss_pred cccCCCCCCCCCeEEEEEEec--CcccHHHHHHHHHHhCCceEEEEEE
Q 014754 96 FNQLSTRPTCSPVYLLKLFCL--DRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 96 ~~~~~~~~~~~~~~~i~v~~~--DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
.......+...|.|+|. ..+|+++++..+|+..|+||.....
T Consensus 437 ----~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsq 480 (521)
T PLN02551 437 ----AVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQ 480 (521)
T ss_pred ----CeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEe
Confidence 00122345777888864 6889999999999999999985444
No 205
>PRK08818 prephenate dehydrogenase; Provisional
Probab=88.13 E-value=1.5 Score=44.39 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=37.1
Q ss_pred ceeEEEeeC-CCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCC
Q 014754 341 ANPVELCGK-GRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCK 396 (419)
Q Consensus 341 ~~~~~v~g~-DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g 396 (419)
.+.+.+.=. |+||.|++|+..|+++||||.+.++. .+++|. +.|++ +..+
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~----~~r~~~-y~f~i-~~~~ 345 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS----RTPAGE-LHFRI-GFEP 345 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEe----cccCce-EEEEE-EEec
Confidence 445555555 99999999999999999999999993 233333 33888 5433
No 206
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=87.60 E-value=4.4 Score=41.05 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=44.7
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE---ee-cCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT---TT-PDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~---T~-~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
.....+.|.-+|+||.|++++..++++|.||.+..-. .. ..+.+.-.+.+... +++..+.|.+.|++
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 3466899999999999999999999999999976433 11 22444444444322 23444556555554
No 207
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.85 E-value=1.7 Score=46.11 Aligned_cols=61 Identities=20% Similarity=0.359 Sum_probs=45.2
Q ss_pred eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754 343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~ 414 (419)
.+-+.-.|+||++..|+..|.+.+|||-.+.+.+...++. +...+.+++ ++. +.+++.|++
T Consensus 454 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~--al~~i~~D~----~v~-----~~~l~~i~~ 514 (526)
T PRK13581 454 MLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGE--ALMVLSVDD----PVP-----EEVLEELRA 514 (526)
T ss_pred EEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCe--EEEEEECCC----CCC-----HHHHHHHhc
Confidence 3444558999999999999999999999999887544444 777777733 455 566666653
No 208
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=86.64 E-value=20 Score=40.28 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=71.0
Q ss_pred CCcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCccc
Q 014754 18 GEPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSF 94 (419)
Q Consensus 18 ~~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~ 94 (419)
.+...|+|.+. ++||+.+++...|+++|.||.-...++...- ..|.|... +.+.....|.+.+.....
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~s--Isf~V~~~-----d~~~av~~L~~~f~~el~-- 383 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYS--ISFCVPQS-----DAAKAKRALEEEFALELK-- 383 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCce--EEEEEeHH-----HHHHHHHHHHHHHHHHhc--
Confidence 35567888764 7899999999999999999965433333331 35666332 222222334333211100
Q ss_pred ccccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 014754 95 YFNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
...........+...|.|+|. ++||+.+++..+|.+.|+||.....
T Consensus 384 -~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq 432 (819)
T PRK09436 384 -EGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ 432 (819)
T ss_pred -cCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 000000122346778999886 7899999999999999999985543
No 209
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=86.20 E-value=2.2 Score=40.29 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=34.0
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT 144 (419)
Q Consensus 107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~ 144 (419)
....|.+.-.|.||++++|+++|+..|.||.+.-+.-+
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~t 113 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLT 113 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeech
Confidence 46679999999999999999999999999999888643
No 210
>PRK06382 threonine dehydratase; Provisional
Probab=86.13 E-value=3 Score=42.78 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=46.1
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee----e--cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIS----T--DGIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~----t--dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
..+.+.|.-+|+||-|++++..|.++|.||.+-... . .|.. ..+|.|...+- ...+.|.+.|++
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~-~v~i~vet~~~--~~~~~v~~~L~~ 398 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQ-SVTFTVNVRGQ--DHLDRILNALRE 398 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcE-EEEEEEEeCCH--HHHHHHHHHHHH
Confidence 457889999999999999999999999999977654 2 4553 45666644311 134466666665
No 211
>PRK08198 threonine dehydratase; Provisional
Probab=85.76 E-value=7 Score=39.97 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=33.7
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 014754 105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT 142 (419)
Q Consensus 105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~ 142 (419)
......+.|.-+|+||-|+++...++++|.||.+....
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 44567899999999999999999999999999977664
No 212
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=85.73 E-value=1.9 Score=45.79 Aligned_cols=61 Identities=18% Similarity=0.328 Sum_probs=45.5
Q ss_pred eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754 343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~ 414 (419)
.+-+.-.||||++..|+..|.+++|||-.+...+...++. +...+.+++ ++. +.+++.|++
T Consensus 453 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~--al~~i~~D~----~v~-----~~~l~~i~~ 513 (525)
T TIGR01327 453 MLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGE--ALMLLSLDQ----PVP-----DEVLEEIKA 513 (525)
T ss_pred EEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCe--EEEEEEcCC----CCC-----HHHHHHHhc
Confidence 3444457999999999999999999999999987545444 777777733 355 566666654
No 213
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=85.35 E-value=3.9 Score=36.30 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=48.7
Q ss_pred eEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 250 TLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 250 tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
-++.+.-.|.||.|..++..|+..|+||.+-.+.. |+-....-+-++ .. |+...+++..+|...+.-
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~-tE~~~~SRiTivv~g------~~~~~EQi~kQL~kLidV 72 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGP-TETPGLSRITIVVSG------DEQVLEQIIKQLNKLIDV 72 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEe-cCCCCceEEEEEEcC------CcchHHHHHHHHHhhccc
Confidence 36777789999999999999999999999998885 443333333333 32 235678888888766654
No 214
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.31 E-value=2 Score=44.15 Aligned_cols=62 Identities=21% Similarity=0.219 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
+...+.+.-+|+||.+++++.+|+++|+||-.-+..+.|..++-++.+.. . -.+.+.+.|++
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~---~--~~~~~~~~i~~ 398 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA---D--YAEEALDALKA 398 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC---C--CcHHHHHHHHc
Confidence 66788999999999999999999999999988888876655556666632 1 13344455554
No 215
>PRK08818 prephenate dehydrogenase; Provisional
Probab=84.42 E-value=2.6 Score=42.75 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=37.1
Q ss_pred CeEEEEEEec-CcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEc
Q 014754 107 PVYLLKLFCL-DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157 (419)
Q Consensus 107 ~~~~i~v~~~-DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~ 157 (419)
..+.|.+.-+ |+||-|++++..|+.+|+||.+-.+.- ...+-.- |++.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~-~r~~~y~-f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR-TPAGELH-FRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec-ccCceEE-EEEEE
Confidence 4677777776 999999999999999999999888832 2222222 77753
No 216
>PRK06349 homoserine dehydrogenase; Provisional
Probab=83.98 E-value=4.3 Score=41.96 Aligned_cols=51 Identities=22% Similarity=0.468 Sum_probs=40.2
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcC
Q 014754 107 PVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDN 158 (419)
Q Consensus 107 ~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~ 158 (419)
..+.|.+...|+||.|++|++.|.++|+||.+...... .+....++++++.
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~ 397 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHE 397 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEe
Confidence 46789999999999999999999999999997766533 2344566677653
No 217
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=83.69 E-value=11 Score=27.63 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=25.1
Q ss_pred EEEE-ecCcccHHHHHHHHHHhCCceEEEEEE
Q 014754 111 LKLF-CLDRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 111 i~v~-~~DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
|++. .+|.||.++++...|++.|+||.....
T Consensus 4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 3443 378999999999999999999985543
No 218
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=83.57 E-value=4.7 Score=40.86 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee---e---cCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIS---T---DGIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~---t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
..+.|.-+|+||.|++++..++++|.||.+-.-. . .|.+ ...+.+...+ +...+.|.+.|++
T Consensus 306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~-~v~v~vet~~--~~~~~~i~~~L~~ 373 (380)
T TIGR01127 306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFA-MVEITLETRG--KEHLDEILKILRD 373 (380)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceE-EEEEEEEeCC--HHHHHHHHHHHHH
Confidence 4889999999999999999999999999987543 1 3443 3344443221 1144566666655
No 219
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.44 E-value=9.2 Score=29.86 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=37.9
Q ss_pred EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEE-EEecCCCcCCCHHHHHHHHHHHH
Q 014754 251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLF-IQQKDGKKIVDPEKQSAICSRLK 318 (419)
Q Consensus 251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F-~v~~~g~~~~d~~~~~~l~~~L~ 318 (419)
++.|.-+||||=|..++.+|. +.||....-... ..+ ...+. .+...++ ++..+.+.+.|.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~-~~~-~~~v~i~ie~~~~----~~~~~~i~~~L~ 63 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYA-DEK-DAHIFVGVSVANG----AEELAELLEDLK 63 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEcc-CCC-eeEEEEEEEeCCc----HHHHHHHHHHHH
Confidence 678888999999999999999 556654444421 122 22233 3443221 466777777764
No 220
>PRK06545 prephenate dehydrogenase; Validated
Probab=83.24 E-value=3.2 Score=41.79 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=35.4
Q ss_pred CCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee
Q 014754 18 GEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST 55 (419)
Q Consensus 18 ~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t 55 (419)
.....|.|.-||+||-+++|+..|...|+||.+-+|..
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 46789999999999999999999999999999999964
No 221
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=83.14 E-value=2.2 Score=45.39 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=45.1
Q ss_pred CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHH
Q 014754 247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAIC 314 (419)
Q Consensus 247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~ 314 (419)
.....+-+.-.||||.+..++..|.++++||...++.+...|+.+. .++..+. +++ ++.+++|+
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al--~~i~~D~-~v~-~~~l~~i~ 512 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEAL--MLLSLDQ-PVP-DEVLEEIK 512 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEE--EEEEcCC-CCC-HHHHHHHh
Confidence 3445556677999999999999999999999999988754566555 3444433 444 34555554
No 222
>PRK06545 prephenate dehydrogenase; Validated
Probab=83.11 E-value=1.8 Score=43.63 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=36.3
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEee
Q 014754 105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTT 144 (419)
Q Consensus 105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~ 144 (419)
.+.++.+.|.-+|+||-+++++..|...|+||.+.+|.-.
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~ 326 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEA 326 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeec
Confidence 4568899999999999999999999999999999999643
No 223
>PRK09224 threonine dehydratase; Reviewed
Probab=83.10 E-value=67 Score=34.00 Aligned_cols=145 Identities=12% Similarity=0.134 Sum_probs=85.5
Q ss_pred CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHH-HHHHHHHHHHHhcCC
Q 014754 247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEK-QSAICSRLKMEMLHP 324 (419)
Q Consensus 247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~-~~~l~~~L~~~l~~~ 324 (419)
.....+.|.-+||||=|..+.+.|. +.||..-+-.. .+.....+|+. ...+ +++ .+.|.+.|.+ .+
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~--~~~~~a~V~vgie~~~-----~~~~~~~i~~~L~~---~g 393 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRY--ADAKEAHIFVGVQLSR-----GQEERAEIIAQLRA---HG 393 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEe--cCCCeEEEEEEEEeCC-----hhhHHHHHHHHHHH---cC
Confidence 4567899999999999999999999 57776655543 23334445643 4322 233 6778777643 23
Q ss_pred ceEEEecCCC------------Cc-ccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEE
Q 014754 325 LRVIIANRGP------------DT-ELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLL 391 (419)
Q Consensus 325 ~~v~i~~~~~------------~~-~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~ 391 (419)
..+...+... .+ ...-...+.+.=++|||-|.+....|. -+.||...+-. .+++ ....-.+
T Consensus 394 y~~~~ls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr---~~~~--~~g~vlv 467 (504)
T PRK09224 394 YPVVDLSDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR---NHGA--DYGRVLA 467 (504)
T ss_pred CCeEECCCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc---cCCc--ccccEEE
Confidence 4433332110 00 000122456677899999999988766 66788888875 3343 2333333
Q ss_pred EcCCCCCCcchHHHHHHHHHHHH
Q 014754 392 DENCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 392 ~d~~g~~~~~~~~~~~~~~~~~~ 414 (419)
|-.+.+. ++..+.+++..
T Consensus 468 ----gi~~~~~-~~~~~~~~l~~ 485 (504)
T PRK09224 468 ----GFQVPDA-DEPEFEAFLDE 485 (504)
T ss_pred ----EEecChh-hHHHHHHHHHH
Confidence 3334322 55666666543
No 224
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.47 E-value=3 Score=44.30 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=44.6
Q ss_pred CCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHH
Q 014754 246 SPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAIC 314 (419)
Q Consensus 246 ~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~ 314 (419)
.+....+-+...|+||.+..++..|.++++||...++.+...|+.+. .++..++ +++ ++.+++|+
T Consensus 449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al--~~i~~D~-~v~-~~~l~~i~ 513 (526)
T PRK13581 449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEAL--MVLSVDD-PVP-EEVLEELR 513 (526)
T ss_pred eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEE--EEEECCC-CCC-HHHHHHHh
Confidence 34455556677999999999999999999999999988643345444 3444433 444 34545554
No 225
>PRK08198 threonine dehydratase; Provisional
Probab=82.23 E-value=7.7 Score=39.64 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=45.2
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeecc-CceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTS-EREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~-~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~ 414 (419)
..+.+.=.||||.|.++...+.+.|.||.+..-...... ....+.-.+-+ + +.++...+.+++.|+.
T Consensus 328 ~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~i-e-----~~~~~~~~~l~~~L~~ 395 (404)
T PRK08198 328 LKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTL-E-----TRGPEHIEEILDALRD 395 (404)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEE-E-----eCCHHHHHHHHHHHHH
Confidence 378888899999999999999999999999876542111 11102222222 2 1234566788888876
No 226
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=82.09 E-value=24 Score=39.65 Aligned_cols=106 Identities=14% Similarity=0.054 Sum_probs=68.2
Q ss_pred CCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 247 PAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 247 ~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
.+.+.|++.+. +.||.+.++..+|.++|+++..-..++ ..... .|.++. ...+.+.+.|... ..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~--s~~si--s~~i~~--------~~~~~~~~~l~~~-~~ 381 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHP--DRQLL--QLAYTS--------EVADSALKLLDDA-AL 381 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecC--CCcEE--EEEEeH--------HHHHHHHHHHHhh-cC
Confidence 45678888876 789999999999999999997665432 22211 244432 1233333333322 12
Q ss_pred CceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754 324 PLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICVFSAA 373 (419)
Q Consensus 324 ~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~ 373 (419)
...+.+... -..+.++|. .+||+...+..+|.+.++++....
T Consensus 382 ~~~i~v~~~--------~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~ 426 (810)
T PRK09466 382 PGELKLREG--------LALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQS 426 (810)
T ss_pred CCcEEEeCC--------eEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEe
Confidence 222322111 236888885 689999999999999999986554
No 227
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=81.83 E-value=42 Score=38.03 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=65.4
Q ss_pred CCCeeEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754 246 SPAHTLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML 322 (419)
Q Consensus 246 ~~~~tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~ 322 (419)
..+.++|++.+. +.+|++.+|...|.++|++|..- ++ ....+ .|.++....... .+.++.+...|.
T Consensus 319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~s--se~si--s~~i~~~~~~~~-~~~~~~l~~~l~---- 387 (861)
T PRK08961 319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SS--SETNV--TVSLDPSENLVN-TDVLAALSADLS---- 387 (861)
T ss_pred ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--Ec--CCCEE--EEEEccccccch-HHHHHHHHHHHh----
Confidence 345788888754 58999999999999999999765 32 12222 255543221111 123444444432
Q ss_pred CCceEEEecCCCCcccccceeEEEeeC---CCCccHHHHHHHHHHcCceE
Q 014754 323 HPLRVIIANRGPDTELLVANPVELCGK---GRPRVFYDVTLALKVLGICV 369 (419)
Q Consensus 323 ~~~~v~i~~~~~~~~~~~~~~~~v~g~---DRpGil~~vt~~l~~~~v~I 369 (419)
..-.+.+... -..|.++|. .+||+...+..+|++.+|++
T Consensus 388 ~~~~i~~~~~--------va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 388 QICRVKIIVP--------CAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred hcCcEEEeCC--------eEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 2112222111 137888885 88999999999999988765
No 228
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=81.57 E-value=18 Score=37.50 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=65.2
Q ss_pred CcEEEEEEcCC-C-CChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCccccc
Q 014754 19 EPHVITVNCPD-K-TGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYF 96 (419)
Q Consensus 19 ~~~~v~V~~~D-r-pgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~ 96 (419)
+...|+|.+.+ . +|+++++...|.++|+||.-..-.+... --.|.|...+ .+...+.|........
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~--sIs~~I~~~~-----~~~a~~~L~~~~~~~~----- 368 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSET--SISFTVDKED-----ADQAKTLLKSELNLSA----- 368 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCc--eEEEEEEHHH-----HHHHHHHHHHHHHhcC-----
Confidence 45567777633 3 7999999999999999997553222222 1355553322 1222222322110000
Q ss_pred ccCCCCCCCCCeEEEEEEe---cCcccHHHHHHHHHHhCCceEEEEE
Q 014754 97 NQLSTRPTCSPVYLLKLFC---LDRKGLLHDVTQVLCELELSIQRVK 140 (419)
Q Consensus 97 ~~~~~~~~~~~~~~i~v~~---~DrpGLl~~i~~~l~~~glnI~~a~ 140 (419)
...-....+...|++++ .+.||+++++...|++.|+||....
T Consensus 369 --~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 --LSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred --cceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 00001233577888876 4789999999999999999998543
No 229
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.29 E-value=13 Score=28.38 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=25.7
Q ss_pred EEEEE--E-ecCcccHHHHHHHHHHhCCceEEEE
Q 014754 109 YLLKL--F-CLDRKGLLHDVTQVLCELELSIQRV 139 (419)
Q Consensus 109 ~~i~v--~-~~DrpGLl~~i~~~l~~~glnI~~a 139 (419)
+.|+| . .++.||++++|..+|+++|+||.-.
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 35666 2 4788999999999999999999844
No 230
>PLN02550 threonine dehydratase
Probab=80.50 E-value=46 Score=35.94 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=66.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcE-EEEEEEEecCCCCcccHHHHHHHHHhhCCCCCc----c
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIW-CYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSV----S 93 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~-~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~----~ 93 (419)
..+.|.-|||||-|.+++.+|... ||.+-.-.. .+.. +...+.+.++ ...++|.+.|++.--.... .
T Consensus 418 ~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~----~~~~~i~~~l~~~g~~~~~l~~~~ 491 (591)
T PLN02550 418 AVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTE----QELQALKKRMESAQLRTVNLTSND 491 (591)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCH----HHHHHHHHHHHHCCCCeEeCCCCh
Confidence 578899999999999999999986 888766442 2221 1222333221 1456666666653211000 0
Q ss_pred --cccccC-C-CCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 014754 94 --FYFNQL-S-TRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 94 --~~~~~~-~-~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
+.+-+. . ....-..--.+.+.-|.|||-|.+++.+|.. ..||...+=
T Consensus 492 ~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~Y 542 (591)
T PLN02550 492 LVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHY 542 (591)
T ss_pred HHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEe
Confidence 111000 0 0011133556777889999999999998874 356665444
No 231
>PRK12483 threonine dehydratase; Reviewed
Probab=80.36 E-value=86 Score=33.40 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=67.2
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee--cCcE-EEEEEEEecCCCCcccH-HHHHHHHHhhCCCC---C
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST--DGIW-CYIVLWVVPHSSSIIRW-TNLKNRLMLECPSC---S 91 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~-~~d~f~V~~~~g~~~~~-~~l~~~Le~~L~~~---~ 91 (419)
....+.|.-|||||-|.+++.+|... ||.+-.-.. .+.. +...+.+.+++ .. +.|.+.|++.--.. .
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~----~~~~~i~~~l~~~g~~~~dls 417 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRH----DPRAQLLASLRAQGFPVLDLT 417 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChh----hhHHHHHHHHHHCCCCeEECC
Confidence 34678889999999999999999988 888765432 2221 11223332222 33 56667776531000 0
Q ss_pred c-ccc----ccc-CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 014754 92 V-SFY----FNQ-LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 92 ~-~~~----~~~-~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
+ ... |.. .-..+....--.+.+.-|.|||=|.+++..|.. ..||...+=
T Consensus 418 dne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~-~~niTeF~Y 472 (521)
T PRK12483 418 DDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGP-RWNISLFHY 472 (521)
T ss_pred CCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCC-Ccceeeeee
Confidence 0 010 100 000112234556777789999999999999984 245554443
No 232
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=80.36 E-value=7.6 Score=33.20 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=48.1
Q ss_pred ceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754 341 ANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 341 ~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~ 414 (419)
...+.+.=.||.|+|+++-+++++.++||...+=.- .-+|+ |--+..+ |.++.. .+.+.+++.+|+
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~--Anvtlsi-~~ssm~----~~V~~ii~kl~k 137 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGR--ANVTLSI-DTSSME----KDVDKIIEKLRK 137 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCce--eeEEEEE-Echhhh----hhHHHHHHHHhc
Confidence 357888889999999999999999999998776432 24455 6666666 444433 336778887775
No 233
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=80.08 E-value=3.3 Score=36.50 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=27.8
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEe
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDI 53 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i 53 (419)
+.+++..-.++.||+++.+++.++++|++|..+-.
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 33444444588999999999999999999997643
No 234
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=79.64 E-value=62 Score=33.75 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=68.8
Q ss_pred CCcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCccc
Q 014754 18 GEPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSF 94 (419)
Q Consensus 18 ~~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~ 94 (419)
.+...|+|.++ .++|..+++...|.++|+|+.----..+... -.|.|... ..+...+.|++.......
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~-----~~~~a~~~l~~~~~~~~~-- 375 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES-----DAPRALRALLEEKLELLA-- 375 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh-----hHHHHHHHHHHHHhhhcc--
Confidence 45667777763 3459999999999999999964322222222 35666322 233333444444322110
Q ss_pred ccccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEE
Q 014754 95 YFNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVK 140 (419)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~ 140 (419)
........-.|.+++. ..||..+++..+|++.|+||....
T Consensus 376 ------~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 376 ------EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred ------eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 0122335667888875 678999999999999999999555
No 235
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=79.47 E-value=14 Score=31.62 Aligned_cols=69 Identities=26% Similarity=0.341 Sum_probs=48.7
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
..+-+.+.+.-.||.|.|+++-.++++.++||......--.+|++--+..+... +. +...+.|-+.|++
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s-sm---~~~V~~ii~kl~k 137 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS-SM---EKDVDKIIEKLRK 137 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch-hh---hhhHHHHHHHHhc
Confidence 345677888999999999999999999999999777654446777666655433 21 2234455555544
No 236
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=79.22 E-value=20 Score=25.78 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=26.8
Q ss_pred eEEEEEE---cCcchHHHHHHHHHHhCCeEEEEEEE
Q 014754 250 TLLQIHC---VDHKGLLYDIMRTLKDCNMKISYGRF 282 (419)
Q Consensus 250 tvi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~i 282 (419)
.+|.+.| .+.||+++++.++|.+.|+++.--.-
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 3566666 47899999999999999999976543
No 237
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=79.21 E-value=3.9 Score=43.39 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=32.2
Q ss_pred eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeee
Q 014754 343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGR 376 (419)
Q Consensus 343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t 376 (419)
+++|.|.||.||.+||...|...++|+...++..
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~ 35 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDP 35 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcC
Confidence 5899999999999999999999999999999874
No 238
>PRK11898 prephenate dehydratase; Provisional
Probab=78.42 E-value=14 Score=35.90 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=38.5
Q ss_pred eeEEEEEEcC-cchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCc
Q 014754 249 HTLLQIHCVD-HKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKK 303 (419)
Q Consensus 249 ~tvi~v~~~D-rpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~ 303 (419)
.|.|-+.-.+ +||-|+++...|+++|+|+.+-.-.-. .+....=.||++.+|..
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~-~~~~~~y~F~vd~eg~~ 250 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPT-KTGLGTYFFFIDVEGHI 250 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccC-CCCCccEEEEEEEEccC
Confidence 4556566655 699999999999999999987765521 23323335788888853
No 239
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.97 E-value=7.3 Score=27.20 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=29.4
Q ss_pred ecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEE
Q 014754 115 CLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFIT 156 (419)
Q Consensus 115 ~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~ 156 (419)
.+|.+|.++++.+.|.++|++|.........++...-.|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 478899999999999999999986554322223333345554
No 240
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=77.88 E-value=22 Score=26.85 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=37.7
Q ss_pred EEEEEEe---cCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 109 YLLKLFC---LDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 109 ~~i~v~~---~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
+.|++.+ .+.+|+++++..+|+++|+++... .+ .+ .--.|.|.... ...+...+.+|.+.|++
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i--~~-s~--~~is~~v~~~~-~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI--ST-SE--VSVSLTLDPTK-NLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE--Ec-CC--cEEEEEEEchh-hccchHHHHHHHHHHHh
Confidence 3566643 678999999999999999999743 22 22 12334444322 11112345566666655
No 241
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=77.84 E-value=3.9 Score=36.08 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=28.3
Q ss_pred CeEEEEEEe--cCcccHHHHHHHHHHhCCceEEEEEE
Q 014754 107 PVYLLKLFC--LDRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 107 ~~~~i~v~~--~DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
+.-+|+|+. .+.||+++.+++.++++||+|..+-.
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 445566665 67899999999999999999996544
No 242
>PLN02317 arogenate dehydratase
Probab=77.48 E-value=14 Score=37.50 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=39.7
Q ss_pred eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCe---------------eEEEEEEecCCCc
Q 014754 249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYR---------------DLDLFIQQKDGKK 303 (419)
Q Consensus 249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~---------------~~D~F~v~~~g~~ 303 (419)
.|.|-+.-+|+||-|+++..+|+..|+|+.+-.-.- ...+ ..=.||+|.+|..
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP--~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~ 350 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRP--QRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM 350 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeee--cCCCCccccccccccccccccEEEEEEEEcCc
Confidence 466777778999999999999999999998766442 2222 3336789988754
No 243
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=77.33 E-value=18 Score=28.11 Aligned_cols=68 Identities=9% Similarity=0.031 Sum_probs=48.9
Q ss_pred CeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754 248 AHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML 322 (419)
Q Consensus 248 ~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~ 322 (419)
..+.+++.+.++|+.|..+.++....|..+-.-..+..-+++.+.=-|.|+.+- ..+-|...|++...
T Consensus 2 ~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R-------~~~lL~~QLeKl~D 69 (86)
T COG3978 2 MQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDR-------SVDLLTSQLEKLYD 69 (86)
T ss_pred ceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCC-------ChHHHHHHHHHHcc
Confidence 357889999999999999999999999999888877432355444336665432 24666777655543
No 244
>PRK12483 threonine dehydratase; Reviewed
Probab=76.47 E-value=1.1e+02 Score=32.56 Aligned_cols=146 Identities=10% Similarity=0.069 Sum_probs=84.3
Q ss_pred CCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHH-HHHHHHHHHHhcC
Q 014754 246 SPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQ-SAICSRLKMEMLH 323 (419)
Q Consensus 246 ~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~-~~l~~~L~~~l~~ 323 (419)
......+.|.-+||||-|.+++.+|... ||.+..-.. .+.+...+++. ... ++++. ++|.++|.+ .
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~--~~~~~~~v~v~ie~~-----~~~~~~~~i~~~l~~---~ 409 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY--ADAREAHLFVGVQTH-----PRHDPRAQLLASLRA---Q 409 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe--cCCCeeEEEEEEEeC-----ChhhhHHHHHHHHHH---C
Confidence 4456788999999999999999999988 776554443 22222444543 332 23454 777777643 3
Q ss_pred CceEEEecCCC------------Ccc-cccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEE
Q 014754 324 PLRVIIANRGP------------DTE-LLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFL 390 (419)
Q Consensus 324 ~~~v~i~~~~~------------~~~-~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~ 390 (419)
+..+...+... .+. ......+.+.=++|||=+..+.+.|.. ..||...+=+- .+.. ..+.|.
T Consensus 410 g~~~~dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~-~~niTeF~YR~---~~~~-~a~v~v 484 (521)
T PRK12483 410 GFPVLDLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGP-RWNISLFHYRN---HGAA-DGRVLA 484 (521)
T ss_pred CCCeEECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCC-CcceeeeeecC---CCCC-ceEEEE
Confidence 34433332110 000 011235667778999999989988864 24566655442 2221 444544
Q ss_pred EEcCCCCCCcchHHHHHHHHHHHH
Q 014754 391 LDENCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 391 ~~d~~g~~~~~~~~~~~~~~~~~~ 414 (419)
|-.+. .++++.+++.+++
T Consensus 485 -----gi~~~-~~~~~~~~~~l~~ 502 (521)
T PRK12483 485 -----GLQVP-EDERAALDAALAA 502 (521)
T ss_pred -----EEeeC-hhHHHHHHHHHHH
Confidence 22232 2566777777764
No 245
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=76.38 E-value=26 Score=27.27 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=48.6
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHc
Q 014754 108 VYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHAVLG 180 (419)
Q Consensus 108 ~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~l~ 180 (419)
.+.+++...++|+.|.++-++-...|..|......+..+ |.+---|.| +.+. ..+.|...|+++.+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV-~s~R------~~~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV-DSDR------SVDLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE-cCCC------ChHHHHHHHHHHcc
Confidence 578999999999999999999999999999888865433 444333444 3221 23567888888763
No 246
>PRK08526 threonine dehydratase; Provisional
Probab=75.97 E-value=32 Score=35.29 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=32.9
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 014754 106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT 142 (419)
Q Consensus 106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~ 142 (419)
.....+.+.-+||||-|.+++..+...+.||....-.
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~ 360 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYD 360 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEE
Confidence 4577899999999999999999999999999976653
No 247
>PRK06349 homoserine dehydrogenase; Provisional
Probab=75.87 E-value=10 Score=39.10 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=43.9
Q ss_pred ceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHH
Q 014754 341 ANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVR 413 (419)
Q Consensus 341 ~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~ 413 (419)
.+.+.+...|+||.+..|+.+|.++|+||.+..-.. ..+. ....+++++. .+++..+++++.+.
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~--~~~~--~~~ivivT~~-----~~e~~l~~~i~~L~ 411 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKG--AGGE--GAEIVIVTHE-----TSEAALRAALAAIE 411 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEecc--CCCC--ceeEEEEEEe-----CCHHHHHHHHHHHh
Confidence 467888899999999999999999999999886542 2222 3455566552 12334445555444
No 248
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.00 E-value=17 Score=27.73 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=36.4
Q ss_pred cCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 116 LDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 116 ~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
++.||+++++.++|+++|+||.-- .+ .. .--.|.|...... .+++.+++|.+.|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI--~~-s~--~~isftv~~~~~~-~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLV--ST-SE--TNVTVSLDPDPNG-LDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEE--Ee-CC--CEEEEEEeCcccc-cchHHHHHHHHHHHh
Confidence 578999999999999999999944 33 22 2234555433311 233456677777766
No 249
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=73.94 E-value=18 Score=37.44 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=45.3
Q ss_pred eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 014754 249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKM 319 (419)
Q Consensus 249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~ 319 (419)
.|.|-+..+|+||-|+++..+|+++|+|+.+-.-.- ..+....=.|+|+.+|.. + ...+.+.+.|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRP-sk~~~~eY~FFVD~eg~~--~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRP-SKTHPGEYEFFVEFDEAS--D-RKLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEeccc-CCCCCccEEEEEEEecCc--c-HHHHHHHHHHHH
Confidence 466666779999999999999999999998766542 123322335788887754 2 334444444443
No 250
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=73.50 E-value=26 Score=25.05 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=28.2
Q ss_pred CCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEc
Q 014754 350 GRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDE 393 (419)
Q Consensus 350 DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d 393 (419)
++||...+|.+.|.++|+++...... . ---.|++..
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t~---~-----~~is~~v~~ 47 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPTS---E-----NSVTLYLDD 47 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEecC---C-----CEEEEEEeh
Confidence 77999999999999999999998632 1 245677743
No 251
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.45 E-value=38 Score=25.79 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=36.6
Q ss_pred cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 014754 257 VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKM 319 (419)
Q Consensus 257 ~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~ 319 (419)
.+.||+++++..+|+++|+++..-.- ....+. |.+......+.+ +.+++|.+.|..
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~----s~~~is--ftv~~~~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST----SETNVT--VSLDPDPNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe----CCCEEE--EEEeCcccccch-HHHHHHHHHHHh
Confidence 57899999999999999999987632 122223 666443222332 356677766643
No 252
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.28 E-value=32 Score=24.78 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=27.5
Q ss_pred eEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEe
Q 014754 250 TLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFS 283 (419)
Q Consensus 250 tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~ 283 (419)
.+|.+.|. ++||++.++.++|.+.|+++.--.-+
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~ 38 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQG 38 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEec
Confidence 35667675 68999999999999999999766443
No 253
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=72.67 E-value=17 Score=37.70 Aligned_cols=58 Identities=7% Similarity=-0.086 Sum_probs=41.1
Q ss_pred CCCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeE-EEEEEecCCCc
Q 014754 245 LSPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDL-DLFIQQKDGKK 303 (419)
Q Consensus 245 ~~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~-D~F~v~~~g~~ 303 (419)
.....|-|-+.-+|+||-|+++-..|+++|+|+.+-.-.-. .+.... =.|+|+.+|..
T Consensus 27 ~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPs-k~~~~e~Y~FfVD~Eg~~ 85 (464)
T TIGR01270 27 EGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDS-KDGTSKTMDVLVDVELFH 85 (464)
T ss_pred CCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcC-CCCCCccEEEEEEEEcCH
Confidence 34455666667799999999999999999999987765531 222222 25788877643
No 254
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=72.49 E-value=6 Score=37.49 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=31.5
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIS 54 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~ 54 (419)
....|.++.-|.||.+.+|+++|+..|.||-+--+-
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc 111 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVC 111 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeee
Confidence 346788999999999999999999999999876654
No 255
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=72.43 E-value=34 Score=24.82 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.7
Q ss_pred EEEEEEc---CcchHHHHHHHHHHhCCeEEE
Q 014754 251 LLQIHCV---DHKGLLYDIMRTLKDCNMKIS 278 (419)
Q Consensus 251 vi~v~~~---DrpGLL~~i~~~l~~~g~~I~ 278 (419)
.|.+.|. +.||++.++..+|.+.|+++.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5677775 689999999999999999995
No 256
>PRK09084 aspartate kinase III; Validated
Probab=72.26 E-value=39 Score=35.17 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=63.4
Q ss_pred CcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754 19 EPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY 95 (419)
Q Consensus 19 ~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~ 95 (419)
+...|+|.+. +.+|.++++...|+++|+||.--. +... -.+|.|...+-.......+.+.+.+.+.... .
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse~--sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~-~-- 377 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSEV--SVSLTLDTTGSTSTGDTLLTQALLTELSQLC-R-- 377 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccCc--EEEEEEechhhhhhhhHHHHHHHHHHHhcCC-e--
Confidence 4567777654 789999999999999999998553 2222 2356664332110011122233333332111 0
Q ss_pred cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceE
Q 014754 96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSI 136 (419)
Q Consensus 96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI 136 (419)
.....+...|.|+|. ++||+.+++..+|++.++.+
T Consensus 378 ------i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~~ 415 (448)
T PRK09084 378 ------VEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNIRM 415 (448)
T ss_pred ------EEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCeEE
Confidence 012345778999886 78999999999998754433
No 257
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=71.92 E-value=35 Score=24.75 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=25.1
Q ss_pred EEEEEec---CcccHHHHHHHHHHhCCceEE
Q 014754 110 LLKLFCL---DRKGLLHDVTQVLCELELSIQ 137 (419)
Q Consensus 110 ~i~v~~~---DrpGLl~~i~~~l~~~glnI~ 137 (419)
.|.|+|. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5777775 789999999999999999996
No 258
>PRK08841 aspartate kinase; Validated
Probab=71.17 E-value=74 Score=32.51 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=60.0
Q ss_pred CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCce
Q 014754 247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLR 326 (419)
Q Consensus 247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~ 326 (419)
.+.+.|++.+ +.+..+...|.++|+++..-.- ....+ .|+++. ...++++. .+...
T Consensus 256 ~~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~~----~~~~~--~~~v~~--------~~~~~~~~----~~~~~-- 311 (392)
T PRK08841 256 RDLALIEVES----ESLPSLTKQCQMLGIEVWNVIE----EADRA--QIVIKQ--------DACAKLKL----VFDDK-- 311 (392)
T ss_pred CCeEEEEecc----chHHHHHHHHHHcCCCEEEEEe----cCCcE--EEEECH--------HHHHHHHH----hCccc--
Confidence 4566777754 3578899999999998876532 22222 255532 22333322 22111
Q ss_pred EEEecCCCCcccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEE
Q 014754 327 VIIANRGPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAA 373 (419)
Q Consensus 327 v~i~~~~~~~~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~ 373 (419)
+.+. .. -..+.+.|...||+...+..+|.+.|+||....
T Consensus 312 i~~~-~~-------~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 312 IRNS-ES-------VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred EEEe-CC-------EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 11 226889999999999999999999999996555
No 259
>PRK09224 threonine dehydratase; Reviewed
Probab=71.12 E-value=70 Score=33.85 Aligned_cols=119 Identities=14% Similarity=0.075 Sum_probs=70.2
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecC-cEEEEEEEEecCCCCcccHHHHHHHHHhhCCCC---Cc-cc
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDG-IWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSC---SV-SF 94 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG-~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~---~~-~~ 94 (419)
-..+.|.-|||||-|.+++.+|. +.||.+-+-...+ .. ..+|....-.+..-..+.|.+.|++.==.. .. ..
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~-a~V~vgie~~~~~~~~~~i~~~L~~~gy~~~~ls~ne~ 404 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKE-AHIFVGVQLSRGQEERAEIIAQLRAHGYPVVDLSDDEL 404 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCe-EEEEEEEEeCChhhHHHHHHHHHHHcCCCeEECCCCHH
Confidence 46788888999999999999998 6888875543211 11 133332221211002566777776631000 00 00
Q ss_pred c----ccc-CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 014754 95 Y----FNQ-LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT 142 (419)
Q Consensus 95 ~----~~~-~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~ 142 (419)
. |.. .-..+....-..+.+.=|.|||-|.+...+|. -+.||...+=.
T Consensus 405 ~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 405 AKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred HHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 0 100 00011222455678888999999999999777 78899877663
No 260
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=69.56 E-value=38 Score=24.19 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=26.6
Q ss_pred EEEEEe---cCcccHHHHHHHHHHhCCceEEEEEE
Q 014754 110 LLKLFC---LDRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 110 ~i~v~~---~DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
.|.+.| ++.||+++++.+.|++.|++|.-...
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 567776 47899999999999999999985543
No 261
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.40 E-value=39 Score=24.26 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=27.1
Q ss_pred EEEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 014754 109 YLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 109 ~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
..|.++|. ++||+.+++.++|++.|++|.-...
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 35677775 6899999999999999999985544
No 262
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=68.99 E-value=32 Score=23.43 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=26.5
Q ss_pred EEEEEEcC---cchHHHHHHHHHHhCCeEEEEEEEe
Q 014754 251 LLQIHCVD---HKGLLYDIMRTLKDCNMKISYGRFS 283 (419)
Q Consensus 251 vi~v~~~D---rpGLL~~i~~~l~~~g~~I~~a~i~ 283 (419)
+|++.+.+ .+|.+.++.++|.++++++..-.-+
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 45566655 8999999999999999999766543
No 263
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=68.79 E-value=34 Score=23.84 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=26.3
Q ss_pred eEEEeeC---CCCccHHHHHHHHHHcCceEEEEEe
Q 014754 343 PVELCGK---GRPRVFYDVTLALKVLGICVFSAAI 374 (419)
Q Consensus 343 ~~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~ 374 (419)
.+.+.|. ++||+++++...|.+.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 3566554 8899999999999999999977764
No 264
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=68.67 E-value=59 Score=36.61 Aligned_cols=102 Identities=12% Similarity=-0.023 Sum_probs=67.5
Q ss_pred CcEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754 19 EPHVITVNCP---DKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY 95 (419)
Q Consensus 19 ~~~~v~V~~~---DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~ 95 (419)
+.+.|+|.+. +.+|.++++..+|+++|+||.--...+++.. ..|.+... ..+.+.+.|+..... ..
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~s--is~~i~~~-----~~~~~~~~l~~~~~~--~~-- 384 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQL--LQLAYTSE-----VADSALKLLDDAALP--GE-- 384 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCcE--EEEEEeHH-----HHHHHHHHHHhhcCC--Cc--
Confidence 4557777765 7789999999999999999875543344432 34444311 233443444442111 00
Q ss_pred cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceEE
Q 014754 96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQ 137 (419)
Q Consensus 96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~ 137 (419)
.........|.|+|. .++|+.+++..+|.+.|+++.
T Consensus 385 ------i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii 423 (810)
T PRK09466 385 ------LKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFI 423 (810)
T ss_pred ------EEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEE
Confidence 022346778999985 689999999999999999996
No 265
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=67.87 E-value=2.8e+02 Score=33.59 Aligned_cols=78 Identities=21% Similarity=0.122 Sum_probs=63.1
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeec-cCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHcCC
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYST-SEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMGW 419 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~-~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l~~~ 419 (419)
..+.+....+|..|+++.-+|..+|+.|.+-..-.-.. ++....++.|++..+.|..++..+.++.+.+.+.+...||
T Consensus 490 ~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~g~ 568 (1528)
T PF05088_consen 490 LRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWNGR 568 (1528)
T ss_pred EEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhcCC
Confidence 57788889999999999999999999999887543222 3444489999998888887776778888888888887665
No 266
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=67.69 E-value=81 Score=32.36 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=42.9
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecC-CeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPD-GRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~-~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
......+.+.-|||||-|.+++..+...+.||...+-.-..+ +.. .++....-. +++..++|.+.|++
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~-~v~v~iE~~----~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETG-PALIGIELN----DKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeE-EEEEEEEeC----CHHHHHHHHHHHHH
Confidence 345778999999999999999997777777999555431111 222 232222211 24555666666655
No 267
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.06 E-value=8.9 Score=26.74 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=28.7
Q ss_pred cCCCCChHHHHHHHHHhCCceEEEEEeee--cCcEEEEEEEE
Q 014754 27 CPDKTGLGCDICRIILDFGLYITKGDIST--DGIWCYIVLWV 66 (419)
Q Consensus 27 ~~DrpgL~~~i~~~l~~~~lnI~~A~i~t--dG~~~~d~f~V 66 (419)
.+|.+|.++++.+.|.++|++|....... .|.. --.|.|
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~-~is~~v 48 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTT-DISFTV 48 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcE-EEEEEE
Confidence 48899999999999999999997654432 3332 245666
No 268
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=66.23 E-value=12 Score=37.64 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=43.3
Q ss_pred eEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHcC
Q 014754 343 PVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMG 418 (419)
Q Consensus 343 ~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l~~ 418 (419)
+++|.|.||-||..|+-..|...+|++...+++ ...+.|+.-+ ...-...+.++.+|.+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid---------~~~~IYln~p--------~l~~~~fs~L~aei~~ 60 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID---------PIGRIYLNFP--------ELEFESFSSLMAEIRR 60 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec---------CCCeEEEecc--------ccCHHHHHHHHHHHhc
Confidence 589999999999999999999999999999986 2334566222 2224455666666543
No 269
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=66.11 E-value=9.5 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.9
Q ss_pred cCCCCChHHHHHHHHHhCCceEEEEE
Q 014754 27 CPDKTGLGCDICRIILDFGLYITKGD 52 (419)
Q Consensus 27 ~~DrpgL~~~i~~~l~~~~lnI~~A~ 52 (419)
.+|.||.++++...|+++|.||.-..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 38999999999999999999997443
No 270
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=65.95 E-value=55 Score=24.64 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=37.2
Q ss_pred eEEEEEE---cCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 014754 250 TLLQIHC---VDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLK 318 (419)
Q Consensus 250 tvi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~ 318 (419)
+.|++.| .+.||++.++..+|.+.|+++..-. + .+.... |.+..+. ...+...+..|.+.|+
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~-~---s~~~is--~~v~~~~-~~~~~~~~~~~~~~l~ 66 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS-T---SEVSVS--LTLDPTK-NLSDQLLLDALVKDLS 66 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE-c---CCcEEE--EEEEchh-hccchHHHHHHHHHHH
Confidence 3455543 5679999999999999999996553 1 233333 5664321 1121234455555554
No 271
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=65.90 E-value=1.8e+02 Score=30.70 Aligned_cols=116 Identities=15% Similarity=0.136 Sum_probs=70.5
Q ss_pred CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHHHHhcCCc
Q 014754 247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLKMEMLHPL 325 (419)
Q Consensus 247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~~~l~~~~ 325 (419)
.....+.|.-+||||=|..++++|... ||...+-.. .+.....+|+. ... ++++++.|.+.|.+ .+.
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~--~~~~~a~v~vgie~~-----~~~~~~~l~~~L~~---~Gy 390 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRY--ADRKDAHIFVGVQLS-----NPQERQEILARLND---GGY 390 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEe--cCCCeEEEEEEEEeC-----CHHHHHHHHHHHHH---cCC
Confidence 466789999999999999999999984 665555443 23223445643 432 35778888887753 233
Q ss_pred eEEEecC-------------CCCcccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEee
Q 014754 326 RVIIANR-------------GPDTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIG 375 (419)
Q Consensus 326 ~v~i~~~-------------~~~~~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~ 375 (419)
.+...+. +..+.....-.+.+.=+.|||-|.+.-.+| .-..||...+-.
T Consensus 391 ~~~dls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l-~~~~~It~f~Yr 452 (499)
T TIGR01124 391 SVVDLTDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTL-QGYWNISLFHYR 452 (499)
T ss_pred CeEECCCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhc-CCCCceeeEEEe
Confidence 3332221 110011112245666789999888776643 234477777764
No 272
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.88 E-value=48 Score=23.60 Aligned_cols=34 Identities=6% Similarity=0.103 Sum_probs=27.2
Q ss_pred eEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEe
Q 014754 250 TLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFS 283 (419)
Q Consensus 250 tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~ 283 (419)
++|.+.|. +.+|++.++...|++.|+++.--.-+
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~ 38 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQG 38 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 35666664 68999999999999999999766543
No 273
>PRK08639 threonine dehydratase; Validated
Probab=64.66 E-value=87 Score=32.23 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=42.9
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 105 CSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 105 ~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
......+.+.-|||||-|.+++..+...+.||...+-.-..+.....++...+- .+++..++|.+.|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~----~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIEL----KDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEe----CCHHHHHHHHHHHHH
Confidence 446788999999999999999997776666999765431111111222222221 134556667666655
No 274
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=64.26 E-value=1.9e+02 Score=32.85 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=63.3
Q ss_pred CcEEEEEE---cCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc
Q 014754 19 EPHVITVN---CPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY 95 (419)
Q Consensus 19 ~~~~v~V~---~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~ 95 (419)
+.+.|+|- .++.+|+++++...|+++|.||.-- ++...- .+|.+.+.+.. .+++..+.+...+.... ..
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse~s--is~~i~~~~~~--~~~~~~~~l~~~l~~~~-~i- 392 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSETN--VTVSLDPSENL--VNTDVLAALSADLSQIC-RV- 392 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCCCE--EEEEEcccccc--chHHHHHHHHHHHhhcC-cE-
Confidence 45667774 3578999999999999999999543 333321 35555433211 12222233333332111 00
Q ss_pred cccCCCCCCCCCeEEEEEEec---CcccHHHHHHHHHHhCCceE
Q 014754 96 FNQLSTRPTCSPVYLLKLFCL---DRKGLLHDVTQVLCELELSI 136 (419)
Q Consensus 96 ~~~~~~~~~~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI 136 (419)
........|.|+|. .+||+.+++..+|++.|+++
T Consensus 393 -------~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 393 -------KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred -------EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 11235678999985 78999999999999987665
No 275
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=62.32 E-value=51 Score=23.48 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=27.0
Q ss_pred cCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEc
Q 014754 116 LDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITD 157 (419)
Q Consensus 116 ~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~ 157 (419)
.+++|+.+++.++|+++|+|+.-. .|. . .--.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i--~t~-~--~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI--PTS-E--NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE--ecC-C--CEEEEEEeh
Confidence 477899999999999999999944 332 2 224566654
No 276
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=61.43 E-value=15 Score=25.24 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=25.8
Q ss_pred EEEEEecC---cccHHHHHHHHHHhCCceEEEEEE
Q 014754 110 LLKLFCLD---RKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 110 ~i~v~~~D---rpGLl~~i~~~l~~~glnI~~a~i 141 (419)
.|+|.+.+ .+|.++++.++|++++++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 45666655 899999999999999999985433
No 277
>PRK08526 threonine dehydratase; Provisional
Probab=60.78 E-value=41 Score=34.47 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=32.2
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEee
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIS 54 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~ 54 (419)
....+.|.-|||||-|++++..+++.+.||.+-+-.
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~ 360 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYD 360 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEE
Confidence 446889999999999999999999999999987754
No 278
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=57.26 E-value=1.6e+02 Score=31.21 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=43.4
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 106 SPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 106 ~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
.....+.|.-|||||-|.+++.+|.. .||...+-.- .+.....+|....-. +++..++|.+.|++
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~-~~~~~a~v~vgie~~----~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRY-ADRKDAHIFVGVQLS----NPQERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEe-cCCCeEEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 35677888999999999999999997 5777665542 222233444443321 35566777777765
No 279
>PRK08841 aspartate kinase; Validated
Probab=57.21 E-value=2.3e+02 Score=28.94 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=71.0
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCccccccc
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFYFNQ 98 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~~~~ 98 (419)
+.+.|++.+ +.++++.+.|+++|+++.--. +...- -.|.|. ...+ ..++..+....
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~--~~~~~--~~~~v~--------~~~~-~~~~~~~~~~i------- 312 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWNVI--EEADR--AQIVIK--------QDAC-AKLKLVFDDKI------- 312 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEEEE--ecCCc--EEEEEC--------HHHH-HHHHHhCcccE-------
Confidence 345556643 357899999999998877432 22211 244552 1122 22233222111
Q ss_pred CCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 014754 99 LSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHAV 178 (419)
Q Consensus 99 ~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~~ 178 (419)
........|.++|...||+.+++..+|.+.|+||.. +.+ .+ ..+.+|.+ .+..++.-+.|.+.
T Consensus 313 ----~~~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~--i~~--s~--~~is~vv~-------~~~~~~av~~lH~~ 375 (392)
T PRK08841 313 ----RNSESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQ--CST--EP--QSSMLVLD-------PANVDRAANILHKT 375 (392)
T ss_pred ----EEeCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEE--EEC--CC--cEEEEEEe-------HHHHHHHHHHHHHH
Confidence 112457789999999999999999999999999963 322 22 23333332 33445555666666
Q ss_pred Hc
Q 014754 179 LG 180 (419)
Q Consensus 179 l~ 180 (419)
+.
T Consensus 376 f~ 377 (392)
T PRK08841 376 YV 377 (392)
T ss_pred Hc
Confidence 63
No 280
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.62 E-value=68 Score=22.39 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=37.2
Q ss_pred EEEee---CCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHH
Q 014754 344 VELCG---KGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRAL 416 (419)
Q Consensus 344 ~~v~g---~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l 416 (419)
+.+.| .+.||++.++...|.+.++++...... + .--.|.+.+ ++..+.+..+.+++
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s-----~---~~is~~v~~---------~~~~~~~~~l~~~l 61 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTS-----E---IKISCLVDE---------DDAEKAVRALHEAF 61 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEcc-----C---CeEEEEEeH---------HHHHHHHHHHHHHh
Confidence 45555 367999999999999999999777632 1 223466633 33455566666654
No 281
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=54.63 E-value=84 Score=37.85 Aligned_cols=75 Identities=9% Similarity=0.009 Sum_probs=55.3
Q ss_pred CCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEeee----cC-cEEEEEEEEecCCCCcc----cHHHHHHHHHhh
Q 014754 16 RPGEPHVITVNCPDKTGLGCDICRIILDFGLYITKGDIST----DG-IWCYIVLWVVPHSSSII----RWTNLKNRLMLE 86 (419)
Q Consensus 16 ~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i~t----dG-~~~~d~f~V~~~~g~~~----~~~~l~~~Le~~ 86 (419)
...+.+.+.+|.+.++..++++.-+|..+|+.|++.+-+. +| ..++.-|.+..+.+... .++.+++.+.++
T Consensus 485 ~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 485 AGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHH
Confidence 3446789999999999999999999999999999999653 33 22368888888776433 345555555555
Q ss_pred CCCC
Q 014754 87 CPSC 90 (419)
Q Consensus 87 L~~~ 90 (419)
..+.
T Consensus 565 ~~g~ 568 (1528)
T PF05088_consen 565 WNGR 568 (1528)
T ss_pred hcCC
Confidence 5443
No 282
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.13 E-value=79 Score=22.39 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=26.8
Q ss_pred EEEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 014754 109 YLLKLFCL---DRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 109 ~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
..|.++|. +.+|+++++.+.|++.|++|.-...
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 35667764 7889999999999999999985544
No 283
>PRK14646 hypothetical protein; Provisional
Probab=52.43 E-value=1.7e+02 Score=25.84 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecC-CCcCCCHHHHHHHHHHHHHHhcCCceEEEecCCCCcccc
Q 014754 261 GLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKD-GKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELL 339 (419)
Q Consensus 261 GLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~-g~~~~d~~~~~~l~~~L~~~l~~~~~v~i~~~~~~~~~~ 339 (419)
-+-..+..++.++|+.+....+... .+.++.-+|+ +.. |..++ =+.++.+.+.+.+.|... + ...
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~-~~~~~LrV~I-Dk~~g~gVt-ldDC~~vSr~is~~LD~~----------D-~i~ 73 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTN-QNPIVIKIII-KKTNGDDIS-LDDCALFNTPASEEIENS----------N-LLN 73 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeC-CCCeEEEEEE-ECCCCCCcc-HHHHHHHHHHHHHHhCcC----------C-CCC
Confidence 4566788899999999999999852 3455555555 443 43444 356788888887777631 0 111
Q ss_pred cceeEEEeeC--CCCccHHHHHHHHHHcCce
Q 014754 340 VANPVELCGK--GRPRVFYDVTLALKVLGIC 368 (419)
Q Consensus 340 ~~~~~~v~g~--DRpGil~~vt~~l~~~~v~ 368 (419)
..|.+||+++ ||| |..--++-+-.|-.
T Consensus 74 ~~Y~LEVSSPGldRp--L~~~~df~r~~G~~ 102 (155)
T PRK14646 74 CSYVLEISSQGVSDE--LTSERDFKTFKGFP 102 (155)
T ss_pred CCeEEEEcCCCCCCc--CCCHHHHHHhCCCE
Confidence 2467777765 554 33334444334443
No 284
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=51.12 E-value=80 Score=21.82 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=26.2
Q ss_pred EEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 014754 110 LLKLFCL---DRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 110 ~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
.|++.+. +++|+++++...|++.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4677654 8899999999999999999985443
No 285
>PRK14634 hypothetical protein; Provisional
Probab=51.04 E-value=1.7e+02 Score=25.70 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCceEEEecCCCCccccc
Q 014754 261 GLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLV 340 (419)
Q Consensus 261 GLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~v~i~~~~~~~~~~~ 340 (419)
-+-..+..++.++|+.+....+... .+.++.-+|+=..+|..++ =+.++.+.+.+.+.|... + ....
T Consensus 8 ~i~~l~~~~~~~~G~elvdve~~~~-~~~~~lrV~ID~~~g~~v~-lddC~~vSr~is~~LD~~----------d-~i~~ 74 (155)
T PRK14634 8 DLETLASATAADKGFELCGIQVLTH-LQPMTLQVQIRRSSGSDVS-LDDCAGFSGPMGEALEAS----------Q-LLTE 74 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeC-CCCcEEEEEEECCCCCccc-HHHHHHHHHHHHHHhccc----------c-cCCC
Confidence 4555667788899999999999852 3455555554334564454 457788888887777632 0 0112
Q ss_pred ceeEEEeeC--CCC
Q 014754 341 ANPVELCGK--GRP 352 (419)
Q Consensus 341 ~~~~~v~g~--DRp 352 (419)
.|.+||+++ |||
T Consensus 75 ~Y~LEVSSPGldRp 88 (155)
T PRK14634 75 AYVLEISSPGIGDQ 88 (155)
T ss_pred CeEEEEeCCCCCCc
Confidence 467777764 665
No 286
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=50.89 E-value=27 Score=25.84 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=25.6
Q ss_pred EEEEEEc-CCCCChHHHHHHHHHhCCceEEEE
Q 014754 21 HVITVNC-PDKTGLGCDICRIILDFGLYITKG 51 (419)
Q Consensus 21 ~~v~V~~-~DrpgL~~~i~~~l~~~~lnI~~A 51 (419)
..|+|.+ ++.||..+++.+.|+++|+||-=-
T Consensus 2 ~~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 2 TQIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 3566665 577999999999999999998755
No 287
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.46 E-value=89 Score=22.17 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=27.7
Q ss_pred eEEEEEEc---CcchHHHHHHHHHHhCCeEEEEEEEe
Q 014754 250 TLLQIHCV---DHKGLLYDIMRTLKDCNMKISYGRFS 283 (419)
Q Consensus 250 tvi~v~~~---DrpGLL~~i~~~l~~~g~~I~~a~i~ 283 (419)
.++.+.|. ++||++..+...|++.|+++.-..-.
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 35666675 68999999999999999999776544
No 288
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.37 E-value=22 Score=27.12 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=23.2
Q ss_pred EcCcchHHHHHHHHHHhCCeEEEEEE
Q 014754 256 CVDHKGLLYDIMRTLKDCNMKISYGR 281 (419)
Q Consensus 256 ~~DrpGLL~~i~~~l~~~g~~I~~a~ 281 (419)
..++||++++|..+|+++|++|..-.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 36789999999999999999998763
No 289
>PLN02550 threonine dehydratase
Probab=50.12 E-value=3.7e+02 Score=29.19 Aligned_cols=145 Identities=8% Similarity=0.024 Sum_probs=82.2
Q ss_pred CCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEE-EecCCCcCCCHHHHHHHHHHHHHHhcCCc
Q 014754 247 PAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFI-QQKDGKKIVDPEKQSAICSRLKMEMLHPL 325 (419)
Q Consensus 247 ~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~-v~~~g~~~~d~~~~~~l~~~L~~~l~~~~ 325 (419)
.....+.|.-+||||-|.+++.+|... ||.+..-... ..+.+ .+++ +... ++++.++|.++|.+ .++
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~-~~~~~-~v~v~ie~~-----~~~~~~~i~~~l~~---~g~ 482 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYS-SEKEA-LVLYSVGVH-----TEQELQALKKRMES---AQL 482 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEec-CCCce-EEEEEEEeC-----CHHHHHHHHHHHHH---CCC
Confidence 345678999999999999999999987 6665544431 22222 2333 2332 35778888887753 233
Q ss_pred eEEEecCCC------------CcccccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEc
Q 014754 326 RVIIANRGP------------DTELLVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDE 393 (419)
Q Consensus 326 ~v~i~~~~~------------~~~~~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d 393 (419)
+....+... -.+......+.+.=++|||-+.++...|.. ..||...+-.. ++.. ..+.|.
T Consensus 483 ~~~~l~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~YR~---~~~~-~a~vlv--- 554 (591)
T PLN02550 483 RTVNLTSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHYRG---QGET-GANVLV--- 554 (591)
T ss_pred CeEeCCCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEeec---CCCC-CccEEE---
Confidence 332222110 011111224566678999999999998764 24555555442 2221 222332
Q ss_pred CCCCCCcchHHHHHHHHHHHH
Q 014754 394 NCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 394 ~~g~~~~~~~~~~~~~~~~~~ 414 (419)
|-.+. ++++..+++++++
T Consensus 555 --Gi~v~-~~e~~~l~~~l~~ 572 (591)
T PLN02550 555 --GIQVP-PEEMQEFKSRANA 572 (591)
T ss_pred --EEeeC-HHHHHHHHHHHHH
Confidence 22333 3567777777754
No 290
>PRK05925 aspartate kinase; Provisional
Probab=49.98 E-value=3.2e+02 Score=28.43 Aligned_cols=106 Identities=16% Similarity=0.085 Sum_probs=63.3
Q ss_pred CCeeEEEEEEcC-cchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCc
Q 014754 247 PAHTLLQIHCVD-HKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPL 325 (419)
Q Consensus 247 ~~~tvi~v~~~D-rpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~ 325 (419)
.+.+++++.+.. .+|.+.++...|.++|++|.... + .+... .|.++.+. .. ...++. |...+.+..
T Consensus 298 ~~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i~-s---~~~si--s~~i~~~~--~~-~~~~~~----l~~~l~~~~ 364 (440)
T PRK05925 298 QNQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLVM-A---QNLGV--YFTIDDDD--IS-EEYPQH----LTDALSAFG 364 (440)
T ss_pred CCEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEEe-c---cCCEE--EEEEechh--cc-HHHHHH----HHHHhcCCc
Confidence 345677776542 47889999999999999997552 2 22222 26665321 11 112222 233333322
Q ss_pred eEEEecCCCCcccccceeEEEeeC--CCCccHHHHHHHHHHcCceEEEEE
Q 014754 326 RVIIANRGPDTELLVANPVELCGK--GRPRVFYDVTLALKVLGICVFSAA 373 (419)
Q Consensus 326 ~v~i~~~~~~~~~~~~~~~~v~g~--DRpGil~~vt~~l~~~~v~I~~~~ 373 (419)
.+.+... -..+.+.|. -+||+...+..+|++.|+||....
T Consensus 365 ~i~~~~~--------~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~ 406 (440)
T PRK05925 365 TVSCEGP--------LALITMIGAKLASWKVVRTFTEKLRGYQTPVFCWC 406 (440)
T ss_pred eEEEECC--------EEEEEEeCCCcccccHHHHHHHHHhhCCCCEEEEE
Confidence 2332211 125777775 338899999999999999996644
No 291
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=49.58 E-value=75 Score=24.03 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=33.7
Q ss_pred CcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 117 DRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 117 DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
-.||+++++.+.|+++|+||.-- .+ ++ .--.|.+.. ... ..+.+++|.+.|++
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I--~~--s~-~~isftv~~--~~~-~~~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLI--ST--SE-VHVSMALHM--ENA-EDTNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEE--Ee--CC-CEEEEEEeh--hhc-ChHHHHHHHHHHHH
Confidence 46899999999999999999844 33 22 223344433 221 12356677777766
No 292
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=49.39 E-value=1e+02 Score=23.02 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=26.5
Q ss_pred EEEEEEe---cCcccHHHHHHHHHHhCCceEEEEEE
Q 014754 109 YLLKLFC---LDRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 109 ~~i~v~~---~DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
..|++.+ .+.+|+++++.+.|++.|+++.-...
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~ 37 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQ 37 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence 3567754 47889999999999999999985544
No 293
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.34 E-value=88 Score=21.80 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=24.8
Q ss_pred EEEEEE---cCcchHHHHHHHHHHhCCeEEEEEE
Q 014754 251 LLQIHC---VDHKGLLYDIMRTLKDCNMKISYGR 281 (419)
Q Consensus 251 vi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~ 281 (419)
.|++.| .+.||++.++...|.+.|+++..-.
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355554 4679999999999999999996654
No 294
>PRK00907 hypothetical protein; Provisional
Probab=49.29 E-value=45 Score=26.78 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=36.4
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEe----eecCcEEEEEEEEe
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDI----STDGIWCYIVLWVV 67 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i----~tdG~~~~d~f~V~ 67 (419)
..-+.|.|.+++++...|..++..+.-..-...+ ++.|.+..-++.|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ 68 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFR 68 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEE
Confidence 4789999999999999999999988765555554 56888643444443
No 295
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.69 E-value=95 Score=22.00 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=26.7
Q ss_pred EEEEEec---CcccHHHHHHHHHHhCCceEEEEEE
Q 014754 110 LLKLFCL---DRKGLLHDVTQVLCELELSIQRVKV 141 (419)
Q Consensus 110 ~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~i 141 (419)
.|.++|. +.||+.+++...|++.|+++.-...
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 5677774 7899999999999999999985544
No 296
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=48.66 E-value=90 Score=21.73 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=24.8
Q ss_pred EEEee---CCCCccHHHHHHHHHHcCceEEEEE
Q 014754 344 VELCG---KGRPRVFYDVTLALKVLGICVFSAA 373 (419)
Q Consensus 344 ~~v~g---~DRpGil~~vt~~l~~~~v~I~~~~ 373 (419)
+.+.| .+.||+..++...|.+.|+++.-..
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 45555 3679999999999999999997775
No 297
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=48.63 E-value=1.1e+02 Score=22.80 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=26.9
Q ss_pred eEEEEEE---cCcchHHHHHHHHHHhCCeEEEEEEEe
Q 014754 250 TLLQIHC---VDHKGLLYDIMRTLKDCNMKISYGRFS 283 (419)
Q Consensus 250 tvi~v~~---~DrpGLL~~i~~~l~~~g~~I~~a~i~ 283 (419)
+.|++.| .+.+|+++++.++|++.|+++.--.-+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 3566654 368999999999999999999766544
No 298
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=47.06 E-value=1.4e+02 Score=30.61 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=46.0
Q ss_pred CCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEE-EecCCCcCCCHHHHHHHHHHHH
Q 014754 246 SPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFI-QQKDGKKIVDPEKQSAICSRLK 318 (419)
Q Consensus 246 ~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~-v~~~g~~~~d~~~~~~l~~~L~ 318 (419)
+.....+.+.-+||||=|.++...+...+.||.+-+-.. ..+.....+++ +... ++++.++|.+.|.
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~-~~~~~~~~v~v~iE~~-----~~~h~~~i~~~L~ 389 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTK-KSNRETGPALIGIELN-----DKEDFAGLLERMA 389 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeee-cCCCCeEEEEEEEEeC-----CHHHHHHHHHHHH
Confidence 456678999999999999999997777777998766553 12322333443 3432 2567788887764
No 299
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=46.92 E-value=1.3e+02 Score=23.07 Aligned_cols=63 Identities=19% Similarity=0.142 Sum_probs=45.5
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEE-eeecCcEEEEEEEEecCCCCcccHHHHHHHHHh
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGD-ISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLML 85 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~-i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le~ 85 (419)
++...||-..++++-.+++..--++.--|.... +.-++.+|+.+|.+ .|...+++++..+|.+
T Consensus 2 g~it~vydh~~~~l~~~l~~iqH~~~~~I~s~~Hvhl~~~~ClEvivv---~G~~~~I~~l~~~l~~ 65 (78)
T PF08753_consen 2 GTITIVYDHHKRELSERLTEIQHEYHDIIISSLHVHLDHDNCLEVIVV---RGPADRIKELAEKLRS 65 (78)
T ss_dssp EEEEEEEETTSTTHHHHHHHHHHHTTTCEEEEEEEEESSSEEEEEEEE---EEEHHHHHHHHHHHHT
T ss_pred EEEEEEEcCCchhHHHHHHHHHHhCcCeEEEeeEEeecCCCeEEEEEE---EcCHHHHHHHHHHHhc
Confidence 356678888899999999999999998777655 33477779999999 4521245555445543
No 300
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=46.45 E-value=33 Score=25.40 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.1
Q ss_pred EEEEEe-cCcccHHHHHHHHHHhCCceEEEE
Q 014754 110 LLKLFC-LDRKGLLHDVTQVLCELELSIQRV 139 (419)
Q Consensus 110 ~i~v~~-~DrpGLl~~i~~~l~~~glnI~~a 139 (419)
.|+|.+ ++.||.++++.+.|+++|+||---
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 456665 466999999999999999999966
No 301
>PRK14636 hypothetical protein; Provisional
Probab=46.22 E-value=2.3e+02 Score=25.60 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 259 HKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 259 rpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
.+-+-..+..++.++|+.+....+... .+.++.-+|+=..+|..++ =+.++.+.+.|.+.|..
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~-~~~~~lrV~ID~~~~ggV~-lDDC~~vSr~Is~~LD~ 66 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGG-KSDPTLQIMAERPDTRQLV-IEDCAALSRRLSDVFDE 66 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcC-CCCeEEEEEEECCCCCCcC-HHHHHHHHHHHHHHhcc
Confidence 344566778889999999999998842 3455555555333333344 45778888888777763
No 302
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=45.87 E-value=35 Score=36.21 Aligned_cols=34 Identities=24% Similarity=0.558 Sum_probs=31.7
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTT 143 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T 143 (419)
.++|.|.||.|+..+|...|..+++|+....|..
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~ 35 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDP 35 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcC
Confidence 4789999999999999999999999999999963
No 303
>PRK14630 hypothetical protein; Provisional
Probab=45.59 E-value=1.7e+02 Score=25.42 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 258 DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 258 DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
|..-+-..+..++.++|+.+........ .+.+..-+|+=..+| ++ =+.++.+.+++...+..
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~-~~~~~lrV~Id~~~g--V~-idDC~~vSr~i~~~ld~ 67 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRN-RNEGKIQIVLYKKDS--FG-VDTLCDLHKMILLILEA 67 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEec-CCCcEEEEEEECCCC--CC-HHHHHHHHHHHHHHhcc
Confidence 3344556678889999999999998742 344555444422345 33 34677777777666543
No 304
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.77 E-value=1.2e+02 Score=22.01 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=26.1
Q ss_pred EEEEEec--CcccHHHHHHHHHHhCCceEEEEEEE
Q 014754 110 LLKLFCL--DRKGLLHDVTQVLCELELSIQRVKVT 142 (419)
Q Consensus 110 ~i~v~~~--DrpGLl~~i~~~l~~~glnI~~a~i~ 142 (419)
.|.++|. ..+|+++++..+|++.|++|.-....
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g 37 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQG 37 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4666664 46899999999999999999855543
No 305
>PRK14645 hypothetical protein; Provisional
Probab=44.75 E-value=2.2e+02 Score=25.07 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 260 KGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 260 pGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
.-+-..+..++.++|+.+....+... .+.++.-+|+=..+|..++ =+.++.+.+.+.+.|..
T Consensus 9 ~~i~~li~~~~~~~G~elvdve~~~~-~~~~ilrV~ID~~~~~~v~-lddC~~vSr~is~~LD~ 70 (154)
T PRK14645 9 PDLQQLAEGALEPLGYEVLEVQVQRS-GGKRIVLVRIDRKDEQPVT-VEDLERASRALEAELDR 70 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeC-CCCeEEEEEEECCCCCCcC-HHHHHHHHHHHHHHhcc
Confidence 34666778899999999999999852 3455554444223344455 45778888888777763
No 306
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=43.97 E-value=63 Score=33.44 Aligned_cols=68 Identities=9% Similarity=0.013 Sum_probs=45.5
Q ss_pred eeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHH
Q 014754 342 NPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRA 415 (419)
Q Consensus 342 ~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~ 415 (419)
..+.+...+ +|-|.++-++|.++++|+.+.++......+..-..+.|++ +.++. ...-..+++.|+..
T Consensus 40 ~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v-~~~~~----~~~~~~~~~~l~~~ 107 (457)
T TIGR01269 40 NQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLI-TLEAN----EINMSLLIESLRGN 107 (457)
T ss_pred EEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEE-EEecc----HhhHHHHHHHHHhh
Confidence 355566555 9999999999999999999999975322221113577777 33332 23356777877764
No 307
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.86 E-value=1.2e+02 Score=21.92 Aligned_cols=33 Identities=6% Similarity=0.010 Sum_probs=26.3
Q ss_pred EEEEEEc--CcchHHHHHHHHHHhCCeEEEEEEEe
Q 014754 251 LLQIHCV--DHKGLLYDIMRTLKDCNMKISYGRFS 283 (419)
Q Consensus 251 vi~v~~~--DrpGLL~~i~~~l~~~g~~I~~a~i~ 283 (419)
+|.+.|. ..+|++.++..+|.+.|++|.-..-.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g 37 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQG 37 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4556664 36899999999999999999766654
No 308
>PRK14638 hypothetical protein; Provisional
Probab=41.67 E-value=2.4e+02 Score=24.65 Aligned_cols=58 Identities=7% Similarity=-0.000 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 263 LYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 263 L~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
-..+..++.++|+.+....+... .+.+..-+|+ +.++..++ =+.++.+.+.|.+.|..
T Consensus 11 ~~~~~~i~~~~G~elvdve~~~~-~~~~~lrV~I-D~~~G~v~-lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 11 RKEAERIAEEQGLEIFDVQYRRE-SRGWVLRIII-DNPVGYVS-VRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHHHHHcCCEEEEEEEEec-CCCcEEEEEE-ECCCCCcC-HHHHHHHHHHHHHHhcc
Confidence 34566788999999999999852 3445554444 54322244 35678888888777763
No 309
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=41.58 E-value=1.2e+02 Score=22.21 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=26.3
Q ss_pred eEEEeeC--CCCccHHHHHHHHHHcCceEEEEEee
Q 014754 343 PVELCGK--GRPRVFYDVTLALKVLGICVFSAAIG 375 (419)
Q Consensus 343 ~~~v~g~--DRpGil~~vt~~l~~~~v~I~~~~~~ 375 (419)
.+.+.|. .+||+..++.++|.+.|+++......
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~ 38 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS 38 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec
Confidence 3555663 37999999999999999999877644
No 310
>PRK08639 threonine dehydratase; Validated
Probab=41.25 E-value=1.8e+02 Score=29.82 Aligned_cols=67 Identities=10% Similarity=0.171 Sum_probs=44.8
Q ss_pred CCCeeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCCCcCCCHHHHHHHHHHHH
Q 014754 246 SPAHTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDGKKIVDPEKQSAICSRLK 318 (419)
Q Consensus 246 ~~~~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g~~~~d~~~~~~l~~~L~ 318 (419)
+.....+.+.-+||||-|.++...+...+.||..-+-... .+.....+++. ... ++++.++|.+.|.
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~-~~~~~~~v~v~iE~~-----~~~h~~~i~~~L~ 400 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKK-NNRETGPVLVGIELK-----DAEDYDGLIERME 400 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeec-CCCCceEEEEEEEeC-----CHHHHHHHHHHHH
Confidence 4566789999999999999999977776669987654421 22222233432 332 3567788888774
No 311
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=41.24 E-value=72 Score=32.38 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=31.0
Q ss_pred EEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEe
Q 014754 251 LLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFS 283 (419)
Q Consensus 251 vi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~ 283 (419)
-++|.|.||-||..++-..|...++|+....|.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid 34 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID 34 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec
Confidence 378999999999999999999999999999986
No 312
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.86 E-value=26 Score=27.06 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.2
Q ss_pred ecCcccHHHHHHHHHHhCCceEEEE
Q 014754 115 CLDRKGLLHDVTQVLCELELSIQRV 139 (419)
Q Consensus 115 ~~DrpGLl~~i~~~l~~~glnI~~a 139 (419)
.++.||+.+++..+|+++|+||.-.
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 3688999999999999999999843
No 313
>PRK04460 nickel responsive regulator; Provisional
Probab=39.73 E-value=1.8e+02 Score=25.04 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=45.0
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEE-eeecCcEEEEEEEEecCCCCcccHHHHHHHHH
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGD-ISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLM 84 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~-i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le 84 (419)
++...||-..+.++..+++.+--++.-.|.... +.-|+.+|+.++.| .|...+.+++...|.
T Consensus 55 Gvi~vvYdH~~~~l~~~l~~iqH~~~d~Iiss~HvHld~~~ClEvivv---~G~~~~I~~L~~~l~ 117 (137)
T PRK04460 55 GTVTLVYNHHVSDLAQKLTEIQHDHHDEIISSLHVHLDHHNCLEVLVL---KGKAKEIKKIADRLI 117 (137)
T ss_pred EEEEEEEeCCcchHHHHHHHHHHhhhceEEEEEEEecCCCcEEEEEEE---EcCHHHHHHHHHHHH
Confidence 455567888888999999999988876676554 44488889999999 453225666655565
No 314
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=39.19 E-value=66 Score=25.59 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCC
Q 014754 355 FYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQL 399 (419)
Q Consensus 355 l~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~ 399 (419)
|....+.|++.|+.+...--.. ... ....||+.||+|..+
T Consensus 87 l~~~~~~l~~~g~~~~~~~~~~---~~~--~~~~~y~~Dp~G~~i 126 (128)
T PF00903_consen 87 LDAAYERLKAQGVEIVEEPDRY---YFG--SGYSFYFRDPDGNLI 126 (128)
T ss_dssp HHHHHHHHHHTTGEEEEEEEEH---STT--CEEEEEEEETTSEEE
T ss_pred HHHHHHHHhhcCccEEecCCCC---CCC--CEEEEEEECCCCCEE
Confidence 4558889999999988665332 333 577789999999765
No 315
>PRK00907 hypothetical protein; Provisional
Probab=38.92 E-value=1.7e+02 Score=23.49 Aligned_cols=64 Identities=19% Similarity=0.073 Sum_probs=43.3
Q ss_pred eeEEEEEEcCcchHHHHHHHHHHhCCeEEEEEEEee--cCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHH
Q 014754 249 HTLLQIHCVDHKGLLYDIMRTLKDCNMKISYGRFSP--NSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRL 317 (419)
Q Consensus 249 ~tvi~v~~~DrpGLL~~i~~~l~~~g~~I~~a~i~t--~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L 317 (419)
.+-+.|.|.++++|...|..++..+.-......+.. ...|....=.+.+.. ++.++++.|-++|
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a-----ts~eQld~iY~~L 82 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA-----ESREQYDAAHQAL 82 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE-----CCHHHHHHHHHHH
Confidence 478999999999999999999999987666555531 124653332222222 3356777776665
No 316
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=38.27 E-value=1.4e+02 Score=20.78 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=25.1
Q ss_pred EEEEEe---cCcccHHHHHHHHHHhCCceEEEEE
Q 014754 110 LLKLFC---LDRKGLLHDVTQVLCELELSIQRVK 140 (419)
Q Consensus 110 ~i~v~~---~DrpGLl~~i~~~l~~~glnI~~a~ 140 (419)
.|++.+ .+.+|+++++.+.|++.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 356654 4679999999999999999997544
No 317
>PRK14633 hypothetical protein; Provisional
Probab=38.03 E-value=2.6e+02 Score=24.40 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCceEEEecCCCCcccccc
Q 014754 262 LLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVA 341 (419)
Q Consensus 262 LL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~v~i~~~~~~~~~~~~ 341 (419)
+-..+..++.++|+.+....+.. .|.+..-+|+ +.++. ++ =+.++.+.+++.+.|... + .....
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~--~~~~~lrV~I-D~~~G-v~-lddC~~vSr~i~~~LD~~----------d-~i~~~ 69 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVG--SGKLTIRIFI-DHENG-VS-VDDCQIVSKEISAVFDVE----------D-PVSGK 69 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe--CCCcEEEEEE-eCCCC-CC-HHHHHHHHHHHHHHhccC----------c-CCCCC
Confidence 34456778999999999999985 3444544444 54322 33 356788888887777631 0 01124
Q ss_pred eeEEEeeC--CCCccHHHHHHHHHHcCc
Q 014754 342 NPVELCGK--GRPRVFYDVTLALKVLGI 367 (419)
Q Consensus 342 ~~~~v~g~--DRpGil~~vt~~l~~~~v 367 (419)
|.+||+++ ||| |...-++-+-.|=
T Consensus 70 Y~LEVSSPGldRp--L~~~~~f~r~~G~ 95 (150)
T PRK14633 70 YILEVSSPGMNRQ--IFNIIQAQALVGF 95 (150)
T ss_pred eEEEEeCCCCCCC--CCCHHHHHHhCCC
Confidence 67777765 664 3333344333443
No 318
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.17 E-value=1.6e+02 Score=21.27 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=23.0
Q ss_pred EEEEEec---CcccHHHHHHHHHHhCCceEE
Q 014754 110 LLKLFCL---DRKGLLHDVTQVLCELELSIQ 137 (419)
Q Consensus 110 ~i~v~~~---DrpGLl~~i~~~l~~~glnI~ 137 (419)
.|.++|. +.||+++++.++|.+.|+++.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 4677775 679999999999999877774
No 319
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=37.02 E-value=76 Score=31.23 Aligned_cols=135 Identities=14% Similarity=0.146 Sum_probs=74.4
Q ss_pred CcchHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEE-ecCC--CcCCCHHHHHHHHHHHHHHhcCC--------ce
Q 014754 258 DHKGLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQ-QKDG--KKIVDPEKQSAICSRLKMEMLHP--------LR 326 (419)
Q Consensus 258 DrpGLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v-~~~g--~~~~d~~~~~~l~~~L~~~l~~~--------~~ 326 (419)
..|--+.+..+.|..++.|+..-.++. |.| .+. ++. +..+ ..+.+ +..++|- .| ..|.+. .+
T Consensus 191 SHPQal~Qce~~L~~l~~~~~r~a~~d-Ta~-Aa~--~~s~~~~~d~~AIAS-e~aA~ly-~l-~Il~~~IqDd~~NvTR 263 (377)
T KOG2797|consen 191 SHPQALGQCECSLTKLGPNAAREAVSD-TAG-AAE--QISASNTADTAAIAS-ERAAELY-GL-NILEKNIQDDLGNVTR 263 (377)
T ss_pred cCcHHHHHHHHHHHhcccceeeeeccc-hHH-HHH--HHHhcccccHHHHHH-HHHHHHh-cc-hhhhhhcccccCCeeE
Confidence 468889999999999999887777764 333 222 322 2111 12221 1222221 11 122222 22
Q ss_pred EEEecCCCCcc-c--ccceeEEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeee------ccCceeeEEEEEEEcCCCC
Q 014754 327 VIIANRGPDTE-L--LVANPVELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYS------TSEREWEIYRFLLDENCKF 397 (419)
Q Consensus 327 v~i~~~~~~~~-~--~~~~~~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~------~~~~~~~~~~f~~~d~~g~ 397 (419)
.-+.-+++-.+ . .-.+.+--.-.+.||.|+++-.+|+-+.||+...+++.+- .++..--.+.||+ |++..
T Consensus 264 FLmLar~p~ip~t~rl~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~h~~p~r~v~~~k~f~ylFyi-dfeas 342 (377)
T KOG2797|consen 264 FLMLAREPIIPDTDRLFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPFHNRPLRVVDDSKNFEYLFYI-DFEAS 342 (377)
T ss_pred EEEEeccCCCCCCCccceeeEEEEeecCCchHHHHHHHHHhhhceeeeeecccccCCCcccccccccccEEEEE-EEEec
Confidence 23333333111 1 1112333335789999999999999999999999997511 1111114688999 65554
Q ss_pred CCc
Q 014754 398 QLS 400 (419)
Q Consensus 398 ~~~ 400 (419)
..+
T Consensus 343 mae 345 (377)
T KOG2797|consen 343 MAE 345 (377)
T ss_pred cCc
Confidence 444
No 320
>PRK01002 nickel responsive regulator; Provisional
Probab=36.97 E-value=2.3e+02 Score=24.49 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=43.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEE-eeecCcEEEEEEEEecCCCCcccHHHHHHHHH
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGD-ISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLM 84 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~-i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le 84 (419)
+...||-+++.++-.+++.+..++.-.|.... +.-|+.+|+.++.| .|...+..++...|.
T Consensus 59 vItivydh~~~~l~~~l~~iqH~~~~~Iiss~Hvhld~~~ClEvivv---~G~~~~I~~l~~kL~ 120 (141)
T PRK01002 59 TISVIYDHHSTGVMEKLTDIQHDYSDLIVASLHIHLDHDHCLEVIVV---RGDAKEIRELTEKLM 120 (141)
T ss_pred EEEEEEeccchhHHHHHHHHHHhccCeEEEeeeeecCCCcEEEEEEE---EcCHHHHHHHHHHHh
Confidence 44448888888999999999999988777544 33478779999999 442225555555555
No 321
>PRK14646 hypothetical protein; Provisional
Probab=36.43 E-value=1.9e+02 Score=25.51 Aligned_cols=56 Identities=5% Similarity=-0.011 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHcC
Q 014754 354 VFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALMG 418 (419)
Q Consensus 354 il~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l~~ 418 (419)
|-.-+..++.++|+-+..++... .++. ..-+.|++.++|+.++ -.-|+.+.+.|..
T Consensus 9 i~~li~p~~~~~G~eLvdve~~~--~~~~--~~LrV~IDk~~g~gVt-----ldDC~~vSr~is~ 64 (155)
T PRK14646 9 LEILLEKVANEFDLKICSLNIQT--NQNP--IVIKIIIKKTNGDDIS-----LDDCALFNTPASE 64 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEe--CCCC--eEEEEEEECCCCCCcc-----HHHHHHHHHHHHH
Confidence 34456778889999999999875 3443 5668888666665665 4445555555543
No 322
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.52 E-value=50 Score=25.49 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=23.7
Q ss_pred CCCCccHHHHHHHHHHcCceEEEEEe
Q 014754 349 KGRPRVFYDVTLALKVLGICVFSAAI 374 (419)
Q Consensus 349 ~DRpGil~~vt~~l~~~~v~I~~~~~ 374 (419)
.+.||.+++|...|+++|+||.....
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 57899999999999999999999864
No 323
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=35.37 E-value=2e+02 Score=21.84 Aligned_cols=32 Identities=9% Similarity=0.200 Sum_probs=26.1
Q ss_pred EEEeeC---CCCccHHHHHHHHHHcCceEEEEEee
Q 014754 344 VELCGK---GRPRVFYDVTLALKVLGICVFSAAIG 375 (419)
Q Consensus 344 ~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~~~ 375 (419)
+++.+. +.+|.-++|.++|++++++|...++.
T Consensus 4 levfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~n 38 (71)
T cd04910 4 LEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTN 38 (71)
T ss_pred EEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecC
Confidence 455554 45888999999999999999999765
No 324
>PRK02047 hypothetical protein; Provisional
Probab=34.52 E-value=1.3e+02 Score=24.03 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=36.0
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEe----eecCcEEEEEEEE
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGDI----STDGIWCYIVLWV 66 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i----~tdG~~~~d~f~V 66 (419)
...+.|.+++.+++...+..++..+...+..+.+ ++.|.+..-.+.|
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v 66 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITV 66 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEE
Confidence 5899999999999999999999999766555544 4588863333344
No 325
>TIGR02793 nikR nickel-responsive transcriptional regulator NikR. Three members of the seed for this model, from Escherichia coli, Pseudomonas putida, and Brucella melitensis, are found associated with a nickel ABC transporter operon that acts to import nickel for use as a cofactor in urease or hydrogenase. These proteins, with characterized nickel-binding and DNA-binding domains, act as nickel-responsive transcriptional regulators. In the larger family of full-length homologs, most others both lack proximity to the nickel ABC transporter operon and form a separate clade. Several of the homologs not within the scope of this model, but rather scoring between the trusted and noise cutoffs, have been shown to bind nickel, copper, or both, and to regulate genes in response to nickel.
Probab=34.45 E-value=2.7e+02 Score=23.77 Aligned_cols=62 Identities=8% Similarity=-0.038 Sum_probs=44.7
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEE-eeecCcEEEEEEEEecCCCCcccHHHHHHHHH
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGD-ISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLM 84 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~-i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le 84 (419)
++...||-..++++-.+++.+--++.-.|.... +.-|+.+|+.++.| .|...+.+++.+.|.
T Consensus 53 G~i~~vYdH~~~~l~~~l~~iqH~~~d~Iiss~HvHld~~~ClEvivv---~G~~~~I~~l~~~l~ 115 (129)
T TIGR02793 53 AVLSYTYDHSKRDLPRRLTQTQHHHHDLSVATLHVHLDHDDCLEVSVL---KGDMGDVQHFADHVI 115 (129)
T ss_pred EEEEEEEeCCchhHHHHHHHHHHhhccEEEEEEEEecCCCceEEEEEE---EcCHHHHHHHHHHHH
Confidence 456668888889999999999988877776544 34488889999999 453224555545555
No 326
>PRK02967 nickel responsive regulator; Provisional
Probab=34.28 E-value=2.7e+02 Score=24.11 Aligned_cols=63 Identities=10% Similarity=-0.017 Sum_probs=45.1
Q ss_pred CcEEEEEEcCCCCChHHHHHHHHHhCCceEEEEE-eeecCcEEEEEEEEecCCCCcccHHHHHHHHH
Q 014754 19 EPHVITVNCPDKTGLGCDICRIILDFGLYITKGD-ISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLM 84 (419)
Q Consensus 19 ~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~-i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le 84 (419)
-++...||-..+.++-.+++.+--++.-.|..+. +.-|+.+|+.+|.| .|...+.+++...|.
T Consensus 54 ~G~it~vYdH~~~~l~~~l~~iqH~~~d~I~ss~HvHld~~~ClEvivv---~G~~~~I~~l~~~l~ 117 (139)
T PRK02967 54 VAVLSYVYDHEKRDLASRLVSTQHHHHDLSVATLHVHLDHDDCLEVAVL---KGDTGDVQHFADDVI 117 (139)
T ss_pred EEEEEEEEeCCcccHHHHHHHHHHhhcceEEEEEEEecCCCcEEEEEEE---EcCHHHHHHHHHHHH
Confidence 3456668888889999999999988877676554 44588889999999 453224555555555
No 327
>PRK14632 hypothetical protein; Provisional
Probab=33.73 E-value=3.5e+02 Score=24.22 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCc-ccHHHHHHHHHhhCCCCCcccccccCCCCCCCCCeEEE
Q 014754 33 LGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSI-IRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLL 111 (419)
Q Consensus 33 L~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~-~~~~~l~~~Le~~L~~~~~~~~~~~~~~~~~~~~~~~i 111 (419)
+-..+..++..+|+.+.+......+.|. --+.|..+.|-. .+++.+.+.|...|.... .-+..|.+
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~-lrV~ID~~~GV~ldDC~~vSr~is~~LD~~d------------~i~~~Y~L 76 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTV-VRLFVDGPEGVTIDQCAEVSRHVGLALEVED------------VISSAYVL 76 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcE-EEEEEECCCCCCHHHHHHHHHHHHHHhcccc------------cCCCCeEE
Confidence 5566778889999999999977766664 344443334422 367888778888775321 11245667
Q ss_pred EEEecCcccHHHHHHHHHHhCCceE
Q 014754 112 KLFCLDRKGLLHDVTQVLCELELSI 136 (419)
Q Consensus 112 ~v~~~DrpGLl~~i~~~l~~~glnI 136 (419)
+|.+|-=.--|...-..-...|-.|
T Consensus 77 EVSSPGldRpL~~~~~f~r~iG~~V 101 (172)
T PRK14632 77 EVSSPGLERPFFRAEQMSPYVGRQI 101 (172)
T ss_pred EEeCCCCCCcCCCHHHHHHhCCCEE
Confidence 7776532222444444444444443
No 328
>PRK00630 nickel responsive regulator; Provisional
Probab=33.44 E-value=2.7e+02 Score=24.40 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=45.0
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceEEEEE-eeecCcEEEEEEEEecCCCCcccHHHHHHHHH
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYITKGD-ISTDGIWCYIVLWVVPHSSSIIRWTNLKNRLM 84 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~-i~tdG~~~~d~f~V~~~~g~~~~~~~l~~~Le 84 (419)
++...||-.+..++..+++.+--++.-.|+... +.-|+..|+.++.|. |...+++++...|.
T Consensus 66 G~itvvYdH~~~~l~~~l~~iqH~~~d~Iist~HvHld~~~CLEvivv~---G~~~~I~~la~~l~ 128 (148)
T PRK00630 66 AVLVVIYDHHQRELNQRMIDIQHASGTHILCTTHIHMDHHNCLETIILR---GNSFEIQRLQLEIG 128 (148)
T ss_pred EEEEEEEeCCcchHHHHHHHHHHhhhceEEEEEEEecCCCCEEEEEEEE---cCHHHHHHHHHHHH
Confidence 455668888888999999999888866666544 444888899999994 43225666666666
No 329
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=33.15 E-value=1.4e+02 Score=25.10 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=28.0
Q ss_pred CCCeEEEEEEec---CcccHHHHHHHHHHhCCceEEEEE
Q 014754 105 CSPVYLLKLFCL---DRKGLLHDVTQVLCELELSIQRVK 140 (419)
Q Consensus 105 ~~~~~~i~v~~~---DrpGLl~~i~~~l~~~glnI~~a~ 140 (419)
+.+...+.+.++ |-+|+|+.|.+.|++.|+.|--..
T Consensus 60 ~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavS 98 (128)
T COG3603 60 EKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVS 98 (128)
T ss_pred cCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEE
Confidence 445555666554 889999999999999999998433
No 330
>PRK14634 hypothetical protein; Provisional
Probab=32.93 E-value=1.8e+02 Score=25.54 Aligned_cols=55 Identities=4% Similarity=-0.106 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHc
Q 014754 354 VFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALM 417 (419)
Q Consensus 354 il~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l~ 417 (419)
+-.-+..++.++|+-+..++... .++. ..-+.|+..++|..++ -.-|+.+.++|.
T Consensus 9 i~~l~~~~~~~~G~elvdve~~~--~~~~--~~lrV~ID~~~g~~v~-----lddC~~vSr~is 63 (155)
T PRK14634 9 LETLASATAADKGFELCGIQVLT--HLQP--MTLQVQIRRSSGSDVS-----LDDCAGFSGPMG 63 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEe--CCCC--cEEEEEEECCCCCccc-----HHHHHHHHHHHH
Confidence 33446667889999999999875 3333 5678888667786566 444555555554
No 331
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.79 E-value=3.5e+02 Score=23.87 Aligned_cols=91 Identities=10% Similarity=0.084 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHhCCceEEEEEeeecC-cEEEEEEEEecCCCCc-ccHHHHHHHHHhhCCCCCcccccccCCCCCCCCCe
Q 014754 31 TGLGCDICRIILDFGLYITKGDISTDG-IWCYIVLWVVPHSSSI-IRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPV 108 (419)
Q Consensus 31 pgL~~~i~~~l~~~~lnI~~A~i~tdG-~~~~d~f~V~~~~g~~-~~~~~l~~~Le~~L~~~~~~~~~~~~~~~~~~~~~ 108 (419)
..++.-+-.++.++|+.+.+..+...| .|.+-+|. ..+.|-- .+++++.+.+...|.... + -.+.
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~i-d~~g~v~lddC~~vSr~is~~LD~ed-----------p-i~~~ 74 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYI-DKEGGVTLDDCADVSRAISALLDVED-----------P-IEGA 74 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEe-CCCCCCCHHHHHHHHHHHHHHhccCC-----------c-cccc
Confidence 456777888999999999999999855 56444433 2222221 367888788888775322 1 1256
Q ss_pred EEEEEEec--CcccHHHHHHHHHHhCCceE
Q 014754 109 YLLKLFCL--DRKGLLHDVTQVLCELELSI 136 (419)
Q Consensus 109 ~~i~v~~~--DrpGLl~~i~~~l~~~glnI 136 (419)
|.++|.+| ||| |......-...|-.|
T Consensus 75 Y~LEVSSPGldRp--L~~~~~f~r~~G~~V 102 (153)
T COG0779 75 YFLEVSSPGLDRP--LKTAEHFARFIGEKV 102 (153)
T ss_pred EEEEeeCCCCCCC--cCCHHHHHHhcCcEE
Confidence 77888765 566 333333334444433
No 332
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=32.38 E-value=2e+02 Score=20.99 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=26.9
Q ss_pred eEEEEEEcC--cchHHHHHHHHHHhCCeEEEEEEEe
Q 014754 250 TLLQIHCVD--HKGLLYDIMRTLKDCNMKISYGRFS 283 (419)
Q Consensus 250 tvi~v~~~D--rpGLL~~i~~~l~~~g~~I~~a~i~ 283 (419)
.+|.+.|.+ +||+..++.++|.+.|+++..-..+
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~ 38 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS 38 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec
Confidence 456666653 6899999999999999999765544
No 333
>PRK14640 hypothetical protein; Provisional
Probab=30.68 E-value=3.7e+02 Score=23.51 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEec-CCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 262 LLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQK-DGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 262 LL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~-~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
+-..+..++.++|+.+....+... .+.+..-+|+ +. +| ++ =+.++.+.++|.+.|..
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~-~~~~~lrV~I-D~~~g--v~-lddC~~vSr~is~~LD~ 65 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRA-GKHSTLRVYI-DGENG--VS-VENCAEVSHQVGAIMDV 65 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEec-CCCcEEEEEE-ECCCC--CC-HHHHHHHHHHHHHHhcc
Confidence 445677788999999999999852 3444544444 54 34 33 46788888888877764
No 334
>PRK14632 hypothetical protein; Provisional
Probab=30.65 E-value=3.9e+02 Score=23.96 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhc
Q 014754 263 LYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEML 322 (419)
Q Consensus 263 L~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~ 322 (419)
-..+..++.++|+.+....+.. .+.+..-+|+ +.++. ++ =+.++.+.+++.+.|.
T Consensus 11 ~~li~pv~~~~G~eLvdve~~~--~~~~~lrV~I-D~~~G-V~-ldDC~~vSr~is~~LD 65 (172)
T PRK14632 11 ADMAGPFLASLGLELWGIELSY--GGRTVVRLFV-DGPEG-VT-IDQCAEVSRHVGLALE 65 (172)
T ss_pred HHHHHHHHHHCCCEEEEEEEEe--CCCcEEEEEE-ECCCC-CC-HHHHHHHHHHHHHHhc
Confidence 3446677889999999999873 3444444444 54322 22 3567888888877776
No 335
>PRK14647 hypothetical protein; Provisional
Probab=29.70 E-value=3.9e+02 Score=23.52 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 262 LLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 262 LL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
+-..+..++.++|+.+....+... .+.++.-+|+ +.++. ++ =+.++.+.+++.+.|..
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~-~~~~~lrV~I-D~~~g-vs-lddC~~vSr~is~~LD~ 67 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKRE-GREMVLRLFI-DKEGG-VN-LDDCAEVSRELSEILDV 67 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEec-CCCeEEEEEE-eCCCC-CC-HHHHHHHHHHHHHHHcc
Confidence 344567778999999999999852 3345554444 54332 23 35678888888777763
No 336
>PLN02828 formyltetrahydrofolate deformylase
Probab=29.05 E-value=1.1e+02 Score=29.59 Aligned_cols=102 Identities=10% Similarity=0.065 Sum_probs=51.7
Q ss_pred HHHHHHhCCceEEEEEeee---cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCCcccc--cccCCCCCCCCCeEEE
Q 014754 37 ICRIILDFGLYITKGDIST---DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCSVSFY--FNQLSTRPTCSPVYLL 111 (419)
Q Consensus 37 i~~~l~~~~lnI~~A~i~t---dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~~~~~--~~~~~~~~~~~~~~~i 111 (419)
+++.|+++|+||.+++-++ .|.+|| -..+. .++.....+.+++.+...-.... +. ..+... . .....|
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~-r~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~--~~~~ri 73 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYS-RSEFI-FDPVKWPRAQMDEDFQEISKHFK--ALKSVVRVPG-L--DPKYKI 73 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEE-EEEEE-eCCCCCCHHHHHHHHHHHHHhcC--CcceEEEEcc-C--CCCcEE
Confidence 4788999999999999886 455443 22221 12211245677666665322211 10 000000 1 112234
Q ss_pred EEEecCcccHHHHHHHHHHhCCceEEEEEEEeec
Q 014754 112 KLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTP 145 (419)
Q Consensus 112 ~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~ 145 (419)
-|...-...-|.++......-.+++.=+-+.|.+
T Consensus 74 avlvSg~g~nl~~ll~~~~~g~l~~eI~~ViSn~ 107 (268)
T PLN02828 74 AVLASKQDHCLIDLLHRWQDGRLPVDITCVISNH 107 (268)
T ss_pred EEEEcCCChhHHHHHHhhhcCCCCceEEEEEeCC
Confidence 4444444445677777766666655555555543
No 337
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=28.76 E-value=54 Score=27.56 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.6
Q ss_pred EEEeeC---CCCccHHHHHHHHHHcCceEEEEE
Q 014754 344 VELCGK---GRPRVFYDVTLALKVLGICVFSAA 373 (419)
Q Consensus 344 ~~v~g~---DRpGil~~vt~~l~~~~v~I~~~~ 373 (419)
+-+.|+ |=+|||.-|.+.|+++||.|+-.+
T Consensus 66 lk~~gpf~FgltGilasV~~pLsd~gigIFavS 98 (128)
T COG3603 66 LKFEGPFDFGLTGILASVSQPLSDNGIGIFAVS 98 (128)
T ss_pred EEEeccccCCcchhhhhhhhhHhhCCccEEEEE
Confidence 444454 889999999999999999999877
No 338
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.41 E-value=2.3e+02 Score=20.41 Aligned_cols=27 Identities=4% Similarity=-0.059 Sum_probs=22.6
Q ss_pred EEEEEEc---CcchHHHHHHHHHHhCCeEE
Q 014754 251 LLQIHCV---DHKGLLYDIMRTLKDCNMKI 277 (419)
Q Consensus 251 vi~v~~~---DrpGLL~~i~~~l~~~g~~I 277 (419)
+|.+.|. +.||++.++.++|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4667775 67999999999999988777
No 339
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.78 E-value=1.2e+02 Score=23.92 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCc
Q 014754 355 FYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLS 400 (419)
Q Consensus 355 l~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~ 400 (419)
+.++.+.|.++|+.+....... .+.. +....||+.||+|..+.
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~--~~~~-~~~~~~~~~DPdG~~ve 121 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVPR--TGAR-GPITSVYFRDPDGNLIE 121 (125)
T ss_pred HHHHHHHHHHCCceeecCcccc--cCCC-CCccEEEEECCCCCEEE
Confidence 7889999999999887555432 1111 13567899999998775
No 340
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=27.35 E-value=3.4e+02 Score=23.13 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCceEEEecCCCCcccccceeEE
Q 014754 266 IMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLVANPVE 345 (419)
Q Consensus 266 i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~v~i~~~~~~~~~~~~~~~~ 345 (419)
|..++..+|+.+...++... .+.+..-+|+-. ++. ++ =+.++++.+.+.+.|.. .......+.+|
T Consensus 2 i~~~~~~~g~~l~~v~~~~~-~~~~~l~V~id~-~~g-v~-lddc~~~sr~i~~~LD~-----------~d~i~~~y~LE 66 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKE-GGNRILRVFIDK-DGG-VS-LDDCEKVSRAISALLDA-----------EDPIPEDYTLE 66 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEE-TTEEEEEEEEE--SS-----HHHHHHHHHHHGGGTTT-----------S----S-EEEE
T ss_pred cccchhhcCCEEEEEEEEEC-CCCEEEEEEEEe-CCC-CC-HHHHHHHHHHHHHHHcc-----------ccccCcceEEE
Q ss_pred EeeC--CCC
Q 014754 346 LCGK--GRP 352 (419)
Q Consensus 346 v~g~--DRp 352 (419)
|+++ |||
T Consensus 67 VSSPG~~r~ 75 (141)
T PF02576_consen 67 VSSPGIDRP 75 (141)
T ss_dssp EE--SSSS-
T ss_pred EeCCCCCCc
No 341
>PRK00341 hypothetical protein; Provisional
Probab=27.02 E-value=1.9e+02 Score=23.02 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=34.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEe----eecCcEEEEEEEE
Q 014754 21 HVITVNCPDKTGLGCDICRIILDFGLYITKGDI----STDGIWCYIVLWV 66 (419)
Q Consensus 21 ~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~A~i----~tdG~~~~d~f~V 66 (419)
+.+.|.|.+.+++-..|..++..+. ....+.+ ++.|.+..-.+.|
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i 66 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHI 66 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEE
Confidence 8899999999999999999998876 6655544 4588864334444
No 342
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=26.45 E-value=82 Score=23.82 Aligned_cols=25 Identities=8% Similarity=-0.091 Sum_probs=22.8
Q ss_pred CCCccHHHHHHHHHHcCceEEEEEe
Q 014754 350 GRPRVFYDVTLALKVLGICVFSAAI 374 (419)
Q Consensus 350 DRpGil~~vt~~l~~~~v~I~~~~~ 374 (419)
..||.+++|.+.|+++|+|+.....
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe
Confidence 5699999999999999999999864
No 343
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.44 E-value=99 Score=24.72 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCc
Q 014754 354 VFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLS 400 (419)
Q Consensus 354 il~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~ 400 (419)
=+.++.+.|.++|+.+...-... ..+..+....||+.||+|..+.
T Consensus 77 dv~~~~~~l~~~g~~~~~~p~~~--~~~~~~~~~~~~~~DPdG~~iE 121 (125)
T cd08357 77 EFDALAERLEAAGVEFLIEPYTR--FEGQPGEQETFFLKDPSGNALE 121 (125)
T ss_pred HHHHHHHHHHHCCCcEecCccee--ccCCcCceeEEEEECCCCCEEE
Confidence 47788899999999887532221 0111113467999999998764
No 344
>PRK14633 hypothetical protein; Provisional
Probab=26.29 E-value=4.4e+02 Score=22.98 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhCCceEEEEEeeecCcEEEEEEEEecCCCCc-ccHHHHHHHHHhhCCCCCcccccccCCCCCCCCCeEEE
Q 014754 33 LGCDICRIILDFGLYITKGDISTDGIWCYIVLWVVPHSSSI-IRWTNLKNRLMLECPSCSVSFYFNQLSTRPTCSPVYLL 111 (419)
Q Consensus 33 L~~~i~~~l~~~~lnI~~A~i~tdG~~~~d~f~V~~~~g~~-~~~~~l~~~Le~~L~~~~~~~~~~~~~~~~~~~~~~~i 111 (419)
+-..+..++..+|+.+.+......|.+.+ -..|..++|-. .+++.+.+.|...|.... .-++.+.+
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~l-rV~ID~~~Gv~lddC~~vSr~i~~~LD~~d------------~i~~~Y~L 72 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTI-RIFIDHENGVSVDDCQIVSKEISAVFDVED------------PVSGKYIL 72 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEeCCCCCCHHHHHHHHHHHHHHhccCc------------CCCCCeEE
Confidence 45567788999999999999887555543 34443344432 367888778888775321 11346778
Q ss_pred EEEecCcccHHHHHHHHHHhCCceEE
Q 014754 112 KLFCLDRKGLLHDVTQVLCELELSIQ 137 (419)
Q Consensus 112 ~v~~~DrpGLl~~i~~~l~~~glnI~ 137 (419)
+|.+|-=.--|...-..-...|-.|.
T Consensus 73 EVSSPGldRpL~~~~~f~r~~G~~v~ 98 (150)
T PRK14633 73 EVSSPGMNRQIFNIIQAQALVGFNVK 98 (150)
T ss_pred EEeCCCCCCCCCCHHHHHHhCCCeEE
Confidence 88876433335555555555555443
No 345
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=26.14 E-value=4.4e+02 Score=22.94 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 262 LLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 262 LL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
+-..+..++..+|+.+....+... .+....-+|+ +.++. + +=+.++.+.+.+.+.|..
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~-~~~~~l~V~I-d~~~g-v-~iddc~~~Sr~is~~LD~ 66 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKE-GRDSTLRIYI-DKEGG-I-DLDDCEEVSRQISAVLDV 66 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEec-CCCcEEEEEE-ECCCC-C-CHHHHHHHHHHHHHHhcc
Confidence 445568889999999999999852 3454444444 54332 3 346788888888777763
No 346
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=24.19 E-value=3.2e+02 Score=31.55 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=41.4
Q ss_pred EecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCC
Q 014754 114 FCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNREL 161 (419)
Q Consensus 114 ~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~ 161 (419)
..+...|+|+.++..+..+|+.+..+.+-+-.+|..+-.|||....+.
T Consensus 239 r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 239 RRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred cCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 345566899999999999999999999998878988899999976554
No 347
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.67 E-value=3.4e+02 Score=20.85 Aligned_cols=60 Identities=7% Similarity=-0.046 Sum_probs=38.2
Q ss_pred EEEeeCCCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHH
Q 014754 344 VELCGKGRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRR 414 (419)
Q Consensus 344 ~~v~g~DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~ 414 (419)
+.+.=++|||-+......+. -+.||...+=.. .+.. ....|.--. +.++ ++..+.+++++
T Consensus 4 ~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~---~~~~-~a~vlvGi~-----~~~~-~~~~l~~~l~~ 63 (81)
T cd04907 4 FRFEFPERPGALKKFLNELL-PKWNITLFHYRN---QGSD-YGRVLVGIQ-----VPDA-DLDELKERLDA 63 (81)
T ss_pred EEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEec---CCCC-ceeEEEEEE-----eChH-HHHHHHHHHHH
Confidence 44566899999999999983 368888888664 2221 344443322 3323 67777777765
No 348
>PRK14630 hypothetical protein; Provisional
Probab=23.65 E-value=4.8e+02 Score=22.55 Aligned_cols=58 Identities=12% Similarity=-0.020 Sum_probs=39.3
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEeee-cCcEEEEEEEEecCCCCc-ccHHHHHHHHHhhC
Q 014754 29 DKTGLGCDICRIILDFGLYITKGDIST-DGIWCYIVLWVVPHSSSI-IRWTNLKNRLMLEC 87 (419)
Q Consensus 29 DrpgL~~~i~~~l~~~~lnI~~A~i~t-dG~~~~d~f~V~~~~g~~-~~~~~l~~~Le~~L 87 (419)
|...+...+..++..+|+.+.+..... .+.|.+ -+.+..++|-. .+++.+.+.+...|
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~gV~idDC~~vSr~i~~~l 65 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDSFGVDTLCDLHKMILLIL 65 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 444567788899999999999999886 455643 44443344422 26777777776665
No 349
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.00 E-value=1.8e+02 Score=22.38 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=37.9
Q ss_pred CCCccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHc
Q 014754 350 GRPRVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLSSMVAREQIVDRVRRALM 417 (419)
Q Consensus 350 DRpGil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~~~~~~~~~~~~~~~~l~ 417 (419)
-..|.++.+..+|.++|+++.++-++- . --...+ +...++ ++..+.++..+++++.
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~PSGI---D-----~~Siii---~~~~~~-~~~~~~i~~~i~~~~~ 68 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMPSGI---D-----DISIII---RDNQLT-DEKEQKILAEIKEELH 68 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeecCCC---c-----cEEEEE---Eccccc-hhhHHHHHHHHHHhcC
Confidence 457899999999999999999987552 1 122233 233344 2245788888888764
No 350
>PRK00110 hypothetical protein; Validated
Probab=22.17 E-value=6.9e+02 Score=23.78 Aligned_cols=102 Identities=10% Similarity=0.073 Sum_probs=65.2
Q ss_pred CCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEE----EEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCCC
Q 014754 17 PGEPHVITVNCPDKTGLGCDICRIILDFGLYITK----GDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSCS 91 (419)
Q Consensus 17 ~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~----A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~~ 91 (419)
..-++.|.+.+.|+....+.|-.+|..+|+++-. +.+|. -|.+ .+. .. ..+.+ ++.++....
T Consensus 93 ~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~kG~i-----~~~-~~----~~d~~---~e~aieaGa 159 (245)
T PRK00110 93 GGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDRKGVI-----VIE-PL----DEDEL---MEAALEAGA 159 (245)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEeccceEE-----EeC-CC----CHHHH---HHHHHhCCC
Confidence 3345688889999999999999999999999844 33454 4442 221 11 23333 344443222
Q ss_pred cccccccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 014754 92 VSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTT 143 (419)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T 143 (419)
... ....+ .+.|+| .|--|..+...|...|+.|.++.+.-
T Consensus 160 eDv--------~~e~~--~~~i~~--~p~~~~~v~~~L~~~g~~~~~sei~~ 199 (245)
T PRK00110 160 EDV--------ETDDE--SFEVIT--APEDFEAVRDALEAAGLEAESAEVTM 199 (245)
T ss_pred CEe--------eccCC--eEEEEE--CHHHHHHHHHHHHHcCCCeeeeEEEE
Confidence 111 11122 255555 46679999999999999999888853
No 351
>PRK14639 hypothetical protein; Provisional
Probab=22.16 E-value=5.1e+02 Score=22.29 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=37.0
Q ss_pred HHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcC
Q 014754 266 IMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLH 323 (419)
Q Consensus 266 i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~ 323 (419)
+..++.++|+.+....+... .+.+..-+|+ +.+|. ++ =+.++.+.+.+.+.|..
T Consensus 3 ~ep~~~~~G~eLvdve~~~~-~~~~~lrV~I-d~~~g-v~-iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSE-NGRKIYRVYI-TKEGG-VN-LDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhCCCEEEEEEEEec-CCCcEEEEEE-eCCCC-CC-HHHHHHHHHHHHHHhcc
Confidence 45678899999999999852 4455555454 54433 34 45788888888777763
No 352
>PRK04998 hypothetical protein; Provisional
Probab=21.50 E-value=2.8e+02 Score=21.80 Aligned_cols=41 Identities=10% Similarity=0.006 Sum_probs=31.5
Q ss_pred cEEEEEEcCCCCChHHHHHHHHHhCCceE--EEEEeeecCcEE
Q 014754 20 PHVITVNCPDKTGLGCDICRIILDFGLYI--TKGDISTDGIWC 60 (419)
Q Consensus 20 ~~~v~V~~~DrpgL~~~i~~~l~~~~lnI--~~A~i~tdG~~~ 60 (419)
...+.|.+++.+++...|..++..+--.- ...+-++.|.+.
T Consensus 15 ~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~ 57 (88)
T PRK04998 15 SFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYH 57 (88)
T ss_pred CceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEE
Confidence 57899999999999999999998873221 334556789863
No 353
>PRK06724 hypothetical protein; Provisional
Probab=21.48 E-value=1.4e+02 Score=24.96 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCc
Q 014754 354 VFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLS 400 (419)
Q Consensus 354 il~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~ 400 (419)
=|.++.+.|.+.|+.+...-... ... .+....+|+.||+|..+.
T Consensus 76 dvd~~~~~l~~~G~~~~~~p~~~--~~~-~~g~~~~~f~DPdG~~iE 119 (128)
T PRK06724 76 VVDEVAEFLSSTKIKIIRGPMEM--NHY-SEGYYTIDFYDPNGFIIE 119 (128)
T ss_pred HHHHHHHHHHHCCCEEecCCccc--CCC-CCCEEEEEEECCCCCEEE
Confidence 46789999999999876543222 111 113578889999999874
No 354
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=20.86 E-value=7.2e+02 Score=23.51 Aligned_cols=104 Identities=11% Similarity=0.121 Sum_probs=65.6
Q ss_pred CCCCcEEEEEEcCCCCChHHHHHHHHHhCCceEEE----EEeee-cCcEEEEEEEEecCCCCcccHHHHHHHHHhhCCCC
Q 014754 16 RPGEPHVITVNCPDKTGLGCDICRIILDFGLYITK----GDIST-DGIWCYIVLWVVPHSSSIIRWTNLKNRLMLECPSC 90 (419)
Q Consensus 16 ~~~~~~~v~V~~~DrpgL~~~i~~~l~~~~lnI~~----A~i~t-dG~~~~d~f~V~~~~g~~~~~~~l~~~Le~~L~~~ 90 (419)
+..-.+.|.+.+.|+....+.|-.+|..+|+++-. +.+|. -|.+ .+... + ...+.+ ++.++...
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~kG~i-----~~~~~-~--~~~d~~---~e~aieaG 160 (238)
T TIGR01033 92 PGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSRKGVI-----EVPKN-E--VDEEDL---MEAAIEAG 160 (238)
T ss_pred CCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeecceEE-----EECCC-C--CCHHHH---HHHHHhCC
Confidence 34445688889999999999999999999999843 34554 3442 22211 1 133444 44444332
Q ss_pred CcccccccCCCCCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 014754 91 SVSFYFNQLSTRPTCSPVYLLKLFCLDRKGLLHDVTQVLCELELSIQRVKVT 142 (419)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~ 142 (419)
.... ...... +.|+|. |--|..+...|..+|+.|.++.+.
T Consensus 161 Aedv--------~~~~~~--~~v~~~--~~~~~~v~~~L~~~g~~i~~sei~ 200 (238)
T TIGR01033 161 AEDI--------DVDDDE--FEVYTA--PEELEKVKEALEAKGFPIESAEIT 200 (238)
T ss_pred Ccee--------eccCCc--EEEEEC--HHHHHHHHHHHHHcCCCceeeEEE
Confidence 2111 001111 555553 567999999999999999988875
No 355
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.86 E-value=1.5e+02 Score=24.94 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEc
Q 014754 353 RVFYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDE 393 (419)
Q Consensus 353 Gil~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d 393 (419)
|-..+|++.|+++|+.+.--+|.- .... ...+|+++|
T Consensus 23 G~~~~VA~~L~e~g~dv~atDI~~--~~a~--~g~~~v~DD 59 (129)
T COG1255 23 GFFLDVAKRLAERGFDVLATDINE--KTAP--EGLRFVVDD 59 (129)
T ss_pred chHHHHHHHHHHcCCcEEEEeccc--ccCc--ccceEEEcc
Confidence 557789999999999999999985 3333 678999988
No 356
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=20.57 E-value=1.5e+02 Score=23.44 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCc
Q 014754 355 FYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLS 400 (419)
Q Consensus 355 l~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~ 400 (419)
+.++.+.+.++|+.+.... . .. ....||+.||+|..+.
T Consensus 87 ~~~~~~~~~~~g~~~~~~~--~---~~---~~~~~~~~DP~G~~iE 124 (126)
T cd08346 87 LDAWRERLRAAGVPVSGVV--D---HF---GERSIYFEDPDGLRLE 124 (126)
T ss_pred HHHHHHHHHHcCCcccceE--e---ec---ceEEEEEECCCCCEEE
Confidence 5678899999999876432 1 11 4678999999998664
No 357
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.13 E-value=6e+02 Score=22.35 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhCCeEEEEEEEeecCCCCeeEEEEEEecCCCcCCCHHHHHHHHHHHHHHhcCCceEEEecCCCCccccc
Q 014754 261 GLLYDIMRTLKDCNMKISYGRFSPNSQGYRDLDLFIQQKDGKKIVDPEKQSAICSRLKMEMLHPLRVIIANRGPDTELLV 340 (419)
Q Consensus 261 GLL~~i~~~l~~~g~~I~~a~i~t~t~g~~~~D~F~v~~~g~~~~d~~~~~~l~~~L~~~l~~~~~v~i~~~~~~~~~~~ 340 (419)
.+..-+-.++.++|+.+...++... .++.+.-+|+ +..|. ++ =+.++++.+++.+.|... + +...
T Consensus 9 ~v~~liep~~~~lG~ELv~ve~~~~-~~~~~lrI~i-d~~g~-v~-lddC~~vSr~is~~LD~e----------d-pi~~ 73 (153)
T COG0779 9 KVTELIEPVVESLGFELVDVEFVKE-GRDSVLRIYI-DKEGG-VT-LDDCADVSRAISALLDVE----------D-PIEG 73 (153)
T ss_pred HHHHHHHHhHhhcCcEEEEEEEEEc-CCCcEEEEEe-CCCCC-CC-HHHHHHHHHHHHHHhccC----------C-cccc
Confidence 3445566788999999999999962 3244544443 44332 22 346788888887777632 0 1113
Q ss_pred ceeEEEeeC--CCCc
Q 014754 341 ANPVELCGK--GRPR 353 (419)
Q Consensus 341 ~~~~~v~g~--DRpG 353 (419)
.|.+||+++ |||=
T Consensus 74 ~Y~LEVSSPGldRpL 88 (153)
T COG0779 74 AYFLEVSSPGLDRPL 88 (153)
T ss_pred cEEEEeeCCCCCCCc
Confidence 567888765 7763
No 358
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.08 E-value=1.3e+02 Score=24.13 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCceEEEEEeeeeeccCceeeEEEEEEEcCCCCCCc
Q 014754 355 FYDVTLALKVLGICVFSAAIGRYSTSEREWEIYRFLLDENCKFQLS 400 (419)
Q Consensus 355 l~~vt~~l~~~~v~I~~~~~~t~~~~~~~~~~~~f~~~d~~g~~~~ 400 (419)
+.++-+.|++.|+.+..-.+... .....|....|++.||+|+.+.
T Consensus 66 id~~~~~l~~~G~~~~~~~~~~~-~~~~~~g~r~f~~~DPdGn~~~ 110 (113)
T cd08356 66 LEAYYEHIKALGLPKKFPGVKLP-PITQPWWGREFFLHDPSGVLWH 110 (113)
T ss_pred HHHHHHHHHHcCCcccccceecC-ccccCCCcEEEEEECCCccEEE
Confidence 55577888999987543222111 1112235688999999998763
No 359
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.04 E-value=4.1e+02 Score=20.40 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=37.4
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeecCCeEEEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014754 110 LLKLFCLDRKGLLHDVTQVLCELELSIQRVKVTTTPDGRVLDLFFITDNRELLHTKKRQDETCEQLHA 177 (419)
Q Consensus 110 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~a~i~T~~~~~~~d~F~V~~~~g~~~~~~~~~~l~~~L~~ 177 (419)
.+.|.-|.|||-|.+.+..+.- +.||...+=. ..++....+|.-..-. ++ ..+.+.+.|.+
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR-~~~~~~a~vlvGi~~~----~~-~~~~l~~~l~~ 63 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELLP-KWNITLFHYR-NQGSDYGRVLVGIQVP----DA-DLDELKERLDA 63 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEe-cCCCCceeEEEEEEeC----hH-HHHHHHHHHHH
Confidence 3566779999999999999943 7888876654 2343333444332211 12 45566666655
Done!