BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014755
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 38/193 (19%)
Query: 92 GIAYARWSPDSRHILTTSDFQLRLTVWS----LLNTACVHVQSPKHASKGVAFTQDGKFA 147
G+A+ SPD + I + SD + + +W+ LL T H S + GVAF+ DG+
Sbjct: 349 GVAF---SPDGQTIASASDDKT-VKLWNRNGQLLQTLTGHSSSVR----GVAFSPDGQ-- 398
Query: 148 AICTRRDCK---------DYINLLSCHTWEIMGVFAVDTLDLADIEWSPDDSAIVIWDSP 198
I + D K + L+ H+ + GV +SPDD I +
Sbjct: 399 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV-----------AFSPDDQTIA--SAS 445
Query: 199 LEYKVLIYSPDGRCLLKYQAYESGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFA 258
+ V +++ +G+ L + S V+ +++SP GQ +A S D+T+++ N
Sbjct: 446 DDKTVKLWNRNGQLLQTLTGHSSS--VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 503
Query: 259 EFMHLSTVRGPCF 271
H S+VRG F
Sbjct: 504 LTGHSSSVRGVAF 516
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 114/281 (40%), Gaps = 56/281 (19%)
Query: 14 CFSPNARYIAVAVDYRLVV---RDAHSFKVVQLFSCLDKISYIEWAL----DSEYILCGL 66
FSP+ + IA A D + V R+ QL L S W + D + I
Sbjct: 23 AFSPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVWGVAFSPDGQTIASAS 76
Query: 67 YKRLMIQAWSLTQP--EWTCKIDEGLAGIAYARWSPDSRHILTTSDFQLRLTVWS----L 120
+ ++ W+ + + G+A+ SPD + I + SD + + +W+ L
Sbjct: 77 DDK-TVKLWNRNGQLLQTLTGHSSSVRGVAF---SPDGQTIASASDDKT-VKLWNRNGQL 131
Query: 121 LNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCK---------DYINLLSCHTWEIMG 171
L T H S GVAF+ DG+ I + D K + L+ H+ + G
Sbjct: 132 LQTLTGHSSSVW----GVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 185
Query: 172 V-FAVDTLDLADIEWSPDDSAIVIWDSPLEYKVLIYSPDGRCLLKYQAYESGLGVKSISW 230
V F+ D +A + DD + +W+ +G+ L + S V+ +++
Sbjct: 186 VAFSPDGQTIAS---ASDDKTVKLWN-----------RNGQLLQTLTGHSSS--VRGVAF 229
Query: 231 SPCGQFLAVGSYDQTLRVLNHLTWKTFAEFMHLSTVRGPCF 271
SP GQ +A S D+T+++ N H S+V G F
Sbjct: 230 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAF 270
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 112/256 (43%), Gaps = 48/256 (18%)
Query: 14 CFSPNARYIAVAVDYRLVVRDAHSFKVVQ-LFSCLDKISYIEWALDSEYILCGLYKRLMI 72
FSP+ + IA A D + V + +++Q L + + ++ D + I + +
Sbjct: 351 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TV 409
Query: 73 QAWSLTQPEWTCKIDEGLAGIAYARW----SPDSRHILTTSDFQLRLTVWS----LLNTA 124
+ W+ ++ + L G + + W SPD + I + SD + + +W+ LL T
Sbjct: 410 KLWNRN-----GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNRNGQLLQTL 463
Query: 125 CVHVQSPKHASKGVAFTQDGKFAAICTRRDCK---------DYINLLSCHTWEIMGV-FA 174
H S + GVAF+ DG+ I + D K + L+ H+ + GV F+
Sbjct: 464 TGHSSSVR----GVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 517
Query: 175 VDTLDLADIEWSPDDSAIVIWDSPLEYKVLIYSPDGRCLLKYQAYESGLGVKSISWSPCG 234
D +A + DD + +W+ +G+ L + S V +++SP G
Sbjct: 518 PDGQTIAS---ASDDKTVKLWN-----------RNGQLLQTLTGHSSS--VWGVAFSPDG 561
Query: 235 QFLAVGSYDQTLRVLN 250
Q +A S D+T+++ N
Sbjct: 562 QTIASASSDKTVKLWN 577
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 116/275 (42%), Gaps = 44/275 (16%)
Query: 14 CFSPNARYIAVAVDYRLVVRDAHSFKVVQ-LFSCLDKISYIEWALDSEYILCGLYKRLMI 72
FSP+ + IA A D + V + +++Q L + + ++ D + I + +
Sbjct: 187 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TV 245
Query: 73 QAWSLTQP--EWTCKIDEGLAGIAYARWSPDSRHILTTSDFQLRLTVWS----LLNTACV 126
+ W+ + + G+A+ PD + I + SD + + +W+ LL T
Sbjct: 246 KLWNRNGQLLQTLTGHSSSVNGVAF---RPDGQTIASASDDKT-VKLWNRNGQLLQTLTG 301
Query: 127 HVQSPKHASKGVAFTQDGKFAAICTRRDCK---------DYINLLSCHTWEIMGV-FAVD 176
H S GVAF+ DG+ I + D K ++ L+ H+ + GV F+ D
Sbjct: 302 HSSSVW----GVAFSPDGQ--TIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPD 355
Query: 177 TLDLADIEWSPDDSAIVIWDSPLEYKVLIYSPDGRCLLKYQAYESGLGVKSISWSPCGQF 236
+A + DD + +W+ +G+ L + S V+ +++SP GQ
Sbjct: 356 GQTIAS---ASDDKTVKLWN-----------RNGQLLQTLTGHSSS--VRGVAFSPDGQT 399
Query: 237 LAVGSYDQTLRVLNHLTWKTFAEFMHLSTVRGPCF 271
+A S D+T+++ N H S+V G F
Sbjct: 400 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 434
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 28/146 (19%)
Query: 136 KGVAFTQDGKFAAICTRRDCK---------DYINLLSCHTWEIMGV-FAVDTLDLADIEW 185
+GVAF+ DG+ I + D K + L+ H+ + GV F+ D +A
Sbjct: 20 RGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS--- 74
Query: 186 SPDDSAIVIWDSPLEYKVLIYSPDGRCLLKYQAYESGLGVKSISWSPCGQFLAVGSYDQT 245
+ DD + +W+ +G+ L + S V+ +++SP GQ +A S D+T
Sbjct: 75 ASDDKTVKLWN-----------RNGQLLQTLTGHSSS--VRGVAFSPDGQTIASASDDKT 121
Query: 246 LRVLNHLTWKTFAEFMHLSTVRGPCF 271
+++ N H S+V G F
Sbjct: 122 VKLWNRNGQLLQTLTGHSSSVWGVAF 147
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 16/194 (8%)
Query: 64 CGLYKRLMIQAWSLTQPEWTCK--IDEG-LAGIAYARWSPDSRHILTTSDFQLRLTVW-- 118
CG +R+ I W W CK + EG + WSP ++ + S F +W
Sbjct: 34 CGGDRRIRI--WGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS-FDATTCIWKK 90
Query: 119 SLLNTACVH-VQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEIMGVFAVDT 177
+ + CV ++ ++ K VA+ G A C+R + +E + V T
Sbjct: 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT 150
Query: 178 LDLADIEWSPDDSAIVIWDSPLEYKVLIY---SPDGRCLLKYQAYESGLGVKSISWSPCG 234
D+ + W P S ++ + + V +Y D C + +ES V S+++ P G
Sbjct: 151 QDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--VWSLAFDPSG 206
Query: 235 QFLAVGSYDQTLRV 248
Q LA S D+T+R+
Sbjct: 207 QRLASCSDDRTVRI 220
>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
Length = 343
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 26/232 (11%)
Query: 9 QTGPSCFSPNARYIAVAV--DYRL----VVRDAHSFKVVQLFSCLDKISYIEWALDSEYI 62
Q P SP+ RY+ V V ++R+ + D + + +++I +++
Sbjct: 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFV 98
Query: 63 LCGLYKRLMIQAWSLTQ--PEWTCKIDEGLAGIAYARWSPDSRHILTTSDFQLRLTVWSL 120
G Y + L P + EGL G A SPD+R + + Q R+ ++++
Sbjct: 99 FVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV 158
Query: 121 LNTACVHVQSPKHAS-------KGVAFTQDGKFAAICTRR--------DCKD-YINLLSC 164
+ + Q P + + + F + ++ A C + KD + N+
Sbjct: 159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY-AYCVNELNSSVDVWELKDPHGNIECV 217
Query: 165 HTWEIMGVFAVDTLDLADIEWSPDDSAIVIWDSPLEY-KVLIYSPDGRCLLK 215
T ++M DT ADI +PD + D V S DG L K
Sbjct: 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 21 YIAVAVDYRLVVRDAHSFKVVQLFSCLD----KISYIEWALDSEYILCGLYKRLMIQAWS 76
+ +VA D +L++ D S + +D +++ + + SE+IL + W
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 77 LTQPEWTCKIDEGLAG-IAYARWSPDSRHILTTSDFQLRLTVWSLLNTACVHVQSPKHAS 135
L + E I +WSP + IL +S RL VW L + QSP+ A
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL--SKIGEEQSPEDAE 360
Query: 136 KG---VAFTQDGKFAAIC 150
G + F G A I
Sbjct: 361 DGPPELLFIHGGHTAKIS 378
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 14 CFSPNARYIAVAVDYRLV-VRDAHSFKVVQLFSCLDKISY-IEWALDSEYILCGLYKRLM 71
CFSP+ +++A + RL+ + D + K+V + ++ Y +++ + ++ G R
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR-T 188
Query: 72 IQAWSLT--QPEWTCKIDEGLAGIAYARWSPDSRHILTTSDFQLRLTVW--------SLL 121
++ W L Q T I++G+ +A SP + + VW L
Sbjct: 189 VRIWDLRTGQCSLTLSIEDGVTTVAV---SPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 122 NTACVHVQSPKHASKGVAFTQDGK 145
++ K + V FT+DG+
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQ 269
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRV 248
S L ++S+ +SP G+FLA G+ D+ +R+
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRI 149
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 15/167 (8%)
Query: 98 WSPDSRHILTTSDFQLRLTVWSLLNTA--------CVHVQSPKHASKGVAFTQDGKFAAI 149
W P + +L F +++W+ +A ++ ++ KGVA++ DG + A
Sbjct: 66 WRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124
Query: 150 CTR-RDCKDYINLLSCHTWEIMGVFAVDTLDLADIEWSPDDSAIVIWDSPLEYKVLI--- 205
C+R + + S +E + V + D+ + W P ++ + S + V I
Sbjct: 125 CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA--SSSYDDTVRIWKD 182
Query: 206 YSPDGRCLLKYQAYESGLGVKSISWSPCGQFLAVGSYDQTLRVLNHL 252
Y D C+ +E + + L GS D T+RV ++
Sbjct: 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 82 WTCKIDEGLAGIAYARWSPDSRHILTTSDFQLRLTVWSLLNTACVHVQSPKHASKGVAFT 141
T K + G+A SPD + + T++ ++V + + A ++ S + KG+A T
Sbjct: 110 GTVKTGKSPLGLA---LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT 166
Query: 142 QDGKFAAICTRRDCKDYINLLSCHTWEIMGVFAVDTLDLADIEWSPDDSAI 192
DG K Y+ + ++ +D +E +P A+
Sbjct: 167 PDG----------TKVYVANFDSXSISVIDTVTNSVIDTVKVEAAPSGIAV 207
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 18/169 (10%)
Query: 98 WSPDSRHILTTSDFQLRLTVWSLLNTACVH--VQSPKHASKGVAFTQDGKFAAICTRRDC 155
W +S+ I + + R L +T + + A V F F I D
Sbjct: 111 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD- 169
Query: 156 KDYINLLSCHTWEIMGVFAVDTLDLADIEWSPD---------DSAIVIWDSPLEYKVLIY 206
+ + + ++ F T + + ++PD D IV+++ K ++
Sbjct: 170 -NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 228
Query: 207 SPDGRCLLKYQAYESGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWK 255
D LK A+ V ++WSP G +A S D+T+++ N T K
Sbjct: 229 EDDS---LKNVAHSGS--VFGLTWSPDGTKIASASADKTIKIWNVATLK 272
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 10/138 (7%)
Query: 21 YIAVAVDYRLVVRDAHSFKVVQLFSCLD----KISYIEWALDSEYILCGLYKRLMIQAWS 76
+ +VA D +L++ D S + +D +++ + + SE+IL + W
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 77 LTQPEWTCKIDEGLAG-IAYARWSPDSRHILTTSDFQLRLTVWSLLNTACVHVQSPKHAS 135
L + E I WSP + IL +S RL VW L + QS + A
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL--SKIGEEQSAEDAE 362
Query: 136 KG---VAFTQDGKFAAIC 150
G + F G A I
Sbjct: 363 DGPPELLFIHGGHTAKIS 380
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 51/268 (19%), Positives = 104/268 (38%), Gaps = 33/268 (12%)
Query: 2 EFTEAYKQTGPSCFSPNARYIAVAVDYRLVVRDAHSFKVVQLFSCLDKISYIEWALDSEY 61
E A Q PS + ++ V +Y L A K V S ++++ + E+
Sbjct: 9 ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAV---------SSVKFSPNGEW 59
Query: 62 ILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTSDFQLRLTVWSLL 121
+ +L I+ W ++ I GI+ WS DS +++ SD + L +W +
Sbjct: 60 LASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK-TLKIWDVS 117
Query: 122 NTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEIMGVFAVDTLDLA 181
+ C +++ K S V + + + + + T + + + ++
Sbjct: 118 SGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 175
Query: 182 DIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYESGLGVKSISWSP 232
+ ++ D S IV IWD + G+C LK + V + +SP
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDDDNPPVSFVKFSP 224
Query: 233 CGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
G+++ + D TL++ ++ K +
Sbjct: 225 NGKYILAATLDNTLKLWDYSKGKCLKTY 252
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 51/268 (19%), Positives = 104/268 (38%), Gaps = 33/268 (12%)
Query: 2 EFTEAYKQTGPSCFSPNARYIAVAVDYRLVVRDAHSFKVVQLFSCLDKISYIEWALDSEY 61
E A Q PS + ++ V +Y L A K V S ++++ + E+
Sbjct: 11 ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAV---------SSVKFSPNGEW 61
Query: 62 ILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTSDFQLRLTVWSLL 121
+ +L I+ W ++ I GI+ WS DS +++ SD + L +W +
Sbjct: 62 LASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK-TLKIWDVS 119
Query: 122 NTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEIMGVFAVDTLDLA 181
+ C +++ K S V + + + + + T + + + ++
Sbjct: 120 SGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 177
Query: 182 DIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYESGLGVKSISWSP 232
+ ++ D S IV IWD + G+C LK + V + +SP
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDDDNPPVSFVKFSP 226
Query: 233 CGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
G+++ + D TL++ ++ K +
Sbjct: 227 NGKYILAATLDNTLKLWDYSKGKCLKTY 254
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 37/134 (27%)
Query: 170 MGVFAVDTLDLADIEWSPD-DSAIVIWD------------SPLEYKVLIYSPDGRCLL-- 214
+GV +VD I S D+ I +WD P++ L +SPD + L
Sbjct: 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATG 140
Query: 215 ----------------KYQAYESGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFA 258
+Y G + SI++SP G++LA G+ D + + + T K
Sbjct: 141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL-- 198
Query: 259 EFMHLSTVRGPCFP 272
L T+ G P
Sbjct: 199 ----LHTLEGHAMP 208
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 274 VFKEVDEPLQLDMSELCLND 293
VFK E L +DM ELC ND
Sbjct: 32 VFKRSSEALGIDMEELCFND 51
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/220 (18%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 50 ISYIEWALDSEYILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTS 109
+S ++++ + E++ +L I+ W ++ I GI+ WS DS +++ S
Sbjct: 32 VSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 110 DFQLRLTVWSLLNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEI 169
D + L +W + + C +++ K S V + + + + + T +
Sbjct: 91 DDK-TLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 170 MGVFAVDTLDLADIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYE 220
+ + ++ + ++ D S IV IWD + G+C LK +
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDD 196
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
V + +SP G+++ + D TL++ ++ K +
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/220 (18%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 50 ISYIEWALDSEYILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTS 109
+S ++++ + E++ +L I+ W ++ I GI+ WS DS +++ S
Sbjct: 32 VSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 110 DFQLRLTVWSLLNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEI 169
D + L +W + + C +++ K S V + + + + + T +
Sbjct: 91 DDK-TLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 170 MGVFAVDTLDLADIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYE 220
+ + ++ + ++ D S IV IWD + G+C LK +
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDD 196
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
V + +SP G+++ + D TL++ ++ K +
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/220 (18%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 50 ISYIEWALDSEYILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTS 109
+S ++++ + E++ +L I+ W ++ I GI+ WS DS +++ S
Sbjct: 22 VSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 80
Query: 110 DFQLRLTVWSLLNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEI 169
D + L +W + + C +++ K S V + + + + + T +
Sbjct: 81 DDK-TLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 137
Query: 170 MGVFAVDTLDLADIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYE 220
+ + ++ + ++ D S IV IWD + G+C LK +
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDD 186
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
V + +SP G+++ + D TL++ ++ K +
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
>pdb|3GSZ|A Chain A, Structure Of The Genotype 2b Hcv Polymerase
pdb|3GSZ|B Chain B, Structure Of The Genotype 2b Hcv Polymerase
pdb|3HVO|A Chain A, Structure Of The Genotype 2b Hcv Polymerase Bound To A Nni
pdb|3HVO|B Chain B, Structure Of The Genotype 2b Hcv Polymerase Bound To A Nni
Length = 563
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 22/102 (21%)
Query: 284 LDMSELCLNDDFI-----QGNSDATNGHIKVRYEVMEIPISLPFQKPPTDKPNPKQGIGL 338
+D L DD + QGN + +++ E M + PP D P P+ + L
Sbjct: 309 VDPVMLVCGDDLVVISESQGNEEDER-NLRAFTEAMT-----RYSAPPGDLPRPEYDLEL 362
Query: 339 MSWSSDS-----------QYICTRNDSMPTTLWIWDICRQEP 369
++ S + +Y TR+ + P T W+ R P
Sbjct: 363 ITSCSSNVSVALDSRGRRRYFLTRDPTTPITRAAWETVRHSP 404
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/208 (18%), Positives = 86/208 (41%), Gaps = 24/208 (11%)
Query: 50 ISYIEWALDSEYILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTS 109
+S ++++ + E++ +L I+ W ++ I GI+ WS DS +++ S
Sbjct: 43 VSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 101
Query: 110 DFQLRLTVWSLLNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEI 169
D + L +W + + C +++ K S V + + + + + T +
Sbjct: 102 DDK-TLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 158
Query: 170 MGVFAVDTLDLADIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYE 220
+ + ++ + ++ D S IV IWD + G+C LK +
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDD 207
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRV 248
V + +SP G+++ + D TL++
Sbjct: 208 DNPPVSFVKFSPNGKYILAATLDNTLKL 235
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 40/220 (18%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 50 ISYIEWALDSEYILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTS 109
+S ++++ + E++ +L I+ W ++ I GI+ WS DS +++ S
Sbjct: 26 VSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 110 DFQLRLTVWSLLNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEI 169
D + L +W + + C +++ K S V + + + + + T +
Sbjct: 85 DDK-TLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 170 MGVFAVDTLDLADIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYE 220
+ + ++ + ++ D S IV IWD + G+C LK +
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDD 190
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
V + +SP G+++ + D TL++ ++ K +
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 40/220 (18%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 50 ISYIEWALDSEYILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTS 109
+S ++++ + E++ +L I+ W ++ I GI+ WS DS +++ S
Sbjct: 27 VSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 85
Query: 110 DFQLRLTVWSLLNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEI 169
D + L +W + + C +++ K S V + + + + + T +
Sbjct: 86 DDK-TLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 142
Query: 170 MGVFAVDTLDLADIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYE 220
+ + ++ + ++ D S IV IWD + G+C LK +
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDD 191
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
V + +SP G+++ + D TL++ ++ K +
Sbjct: 192 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 40/220 (18%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 50 ISYIEWALDSEYILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTS 109
+S ++++ + E++ +L I+ W ++ I GI+ WS DS +++ S
Sbjct: 26 VSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 110 DFQLRLTVWSLLNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEI 169
D + L +W + + C +++ K S V + + + + + T +
Sbjct: 85 DDK-TLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 170 MGVFAVDTLDLADIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYE 220
+ + ++ + ++ D S IV IWD + G+C LK +
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDD 190
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
V + +SP G+++ + D TL++ ++ K +
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 40/220 (18%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 50 ISYIEWALDSEYILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTS 109
+S ++++ + E++ +L I+ W ++ I GI+ WS DS +++ S
Sbjct: 25 VSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 83
Query: 110 DFQLRLTVWSLLNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEI 169
D + L +W + + C +++ K S V + + + + + T +
Sbjct: 84 DDK-TLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 140
Query: 170 MGVFAVDTLDLADIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYE 220
+ + ++ + ++ D S IV IWD + G+C LK +
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDD 189
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
V + +SP G+++ + D TL++ ++ K +
Sbjct: 190 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 40/220 (18%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 50 ISYIEWALDSEYILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTS 109
+S ++++ + E++ +L I+ W ++ I GI+ WS DS +++ S
Sbjct: 31 VSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 89
Query: 110 DFQLRLTVWSLLNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEI 169
D + L +W + + C +++ K S V + + + + + T +
Sbjct: 90 DDK-TLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 146
Query: 170 MGVFAVDTLDLADIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYE 220
+ + ++ + ++ D S IV IWD + G+C LK +
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDD 195
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
V + +SP G+++ + D TL++ ++ K +
Sbjct: 196 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 35/283 (12%)
Query: 15 FSPNARYIAV-AVDYRLVVRDAHSFKVVQLF-SCLDKISYIEWALDSEYILCGLYKR-LM 71
FS + YIA + D ++ + D+ + K+V + ++++ + S ++L
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 72 IQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILT-TSDFQLRL-TVWSLLNTACVHVQ 129
++ W L Q E + + + R+SPD + + ++D LRL V S ++V+
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Query: 130 S--------PKHAS---KGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEIMGVFAVDTL 178
P+ K +++ DG + K+ + L HT ++ + T
Sbjct: 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----KNKVLLFDIHTSGLLA--EIHTG 838
Query: 179 DLADIEW---SPDDSAIVIWDSPLEYKVLIYSPDGRCLLKYQAYESGLG-VKSISWSPCG 234
+ I++ SP D VI S +Y V +++ D R LK L V + +SP G
Sbjct: 839 HHSTIQYCDFSPYDHLAVIALS--QYCVELWNIDSR--LKVADCRGHLSWVHGVMFSPDG 894
Query: 235 QFLAVGSYDQTLRVLNHLTWKTFAEFMHLSTVRGPCFPAVFKE 277
S DQT+RV W+T + + V VF+E
Sbjct: 895 SSFLTASDDQTIRV-----WETKKVCKNSAIVLKQEIDVVFQE 932
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 35/283 (12%)
Query: 15 FSPNARYIAV-AVDYRLVVRDAHSFKVVQLF-SCLDKISYIEWALDSEYILCGLYKR-LM 71
FS + YIA + D ++ + D+ + K+V + ++++ + S ++L
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 72 IQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILT-TSDFQLRL-TVWSLLNTACVHVQ 129
++ W L Q E + + + R+SPD + + ++D LRL V S ++V+
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 791
Query: 130 S--------PKHAS---KGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEIMGVFAVDTL 178
P+ K +++ DG + K+ + L HT ++ + T
Sbjct: 792 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----KNKVLLFDIHTSGLLA--EIHTG 845
Query: 179 DLADIEW---SPDDSAIVIWDSPLEYKVLIYSPDGRCLLKYQAYESGLG-VKSISWSPCG 234
+ I++ SP D VI S +Y V +++ D R LK L V + +SP G
Sbjct: 846 HHSTIQYCDFSPYDHLAVIALS--QYCVELWNIDSR--LKVADCRGHLSWVHGVMFSPDG 901
Query: 235 QFLAVGSYDQTLRVLNHLTWKTFAEFMHLSTVRGPCFPAVFKE 277
S DQT+RV W+T + + V VF+E
Sbjct: 902 SSFLTASDDQTIRV-----WETKKVCKNSAIVLKQEIDVVFQE 939
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 40/220 (18%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 50 ISYIEWALDSEYILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTS 109
+S ++++ + E++ +L I+ W ++ I GI+ WS DS +++ S
Sbjct: 32 VSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 110 DFQLRLTVWSLLNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEI 169
D + L +W + + C +++ K S V + + + + + T +
Sbjct: 91 DDK-TLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 170 MGVFAVDTLDLADIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYE 220
+ + ++ + ++ D S IV IWD + G+C LK +
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDD 196
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
V + +SP G+++ + D TL++ ++ K +
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 40/220 (18%), Positives = 90/220 (40%), Gaps = 24/220 (10%)
Query: 50 ISYIEWALDSEYILCGLYKRLMIQAWSLTQPEWTCKIDEGLAGIAYARWSPDSRHILTTS 109
+S ++++ + E++ +L I+ W ++ I GI+ WS DS +++ S
Sbjct: 29 VSSVKFSPNGEWLAASSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 110 DFQLRLTVWSLLNTACVHVQSPKHASKGVAFTQDGKFAAICTRRDCKDYINLLSCHTWEI 169
D + L +W + + C +++ K S V + + + + + T +
Sbjct: 88 DDK-TLKIWDVSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 170 MGVFAVDTLDLADIEWSPDDSAIV---------IWDSPLEYKVLIYSPDGRCLLKYQAYE 220
+ + ++ + ++ D S IV IWD + G+C LK +
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD----------TASGQC-LKTLIDD 193
Query: 221 SGLGVKSISWSPCGQFLAVGSYDQTLRVLNHLTWKTFAEF 260
V + +SP G+++ + D TL++ ++ K +
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,882,462
Number of Sequences: 62578
Number of extensions: 585703
Number of successful extensions: 1077
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 108
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)