Citrus Sinensis ID: 014757
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 419 | 2.2.26 [Sep-21-2011] | |||||||
| P52425 | 372 | Glycerol-3-phosphate dehy | N/A | no | 0.866 | 0.975 | 0.852 | 0.0 | |
| Q9SCX9 | 400 | Glycerol-3-phosphate dehy | yes | no | 0.871 | 0.912 | 0.820 | 1e-180 | |
| Q5EA88 | 349 | Glycerol-3-phosphate dehy | yes | no | 0.816 | 0.979 | 0.524 | 2e-98 | |
| P21695 | 349 | Glycerol-3-phosphate dehy | yes | no | 0.816 | 0.979 | 0.521 | 1e-97 | |
| Q5R5V3 | 351 | Glycerol-3-phosphate dehy | yes | no | 0.813 | 0.971 | 0.520 | 6e-97 | |
| Q8N335 | 351 | Glycerol-3-phosphate dehy | no | no | 0.813 | 0.971 | 0.520 | 7e-97 | |
| Q6P824 | 352 | Glycerol-3-phosphate dehy | yes | no | 0.816 | 0.971 | 0.518 | 9e-97 | |
| P13707 | 349 | Glycerol-3-phosphate dehy | yes | no | 0.813 | 0.977 | 0.526 | 1e-96 | |
| Q5RCE0 | 349 | Glycerol-3-phosphate dehy | no | no | 0.816 | 0.979 | 0.518 | 1e-96 | |
| Q3ULJ0 | 351 | Glycerol-3-phosphate dehy | no | no | 0.813 | 0.971 | 0.517 | 2e-96 |
| >sp|P52425|GPDA_CUPLA Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cuphea lanceolata GN=GPDH PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/366 (85%), Positives = 339/366 (92%), Gaps = 3/366 (0%)
Query: 45 TLPSSFSSGSDDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLP 104
T + SSG D +S+VTVVGSGNWGSVA+KLIA+NTL+L SFHDEVRMWVFEETLP
Sbjct: 9 THQNQHSSGYDG---PRSRVTVVGSGNWGSVAAKLIATNTLKLPSFHDEVRMWVFEETLP 65
Query: 105 SGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRL 164
SGEKLTDVIN+TNENVKYLPGIKLG+NVVADPDLENAVKDANMLVFVTPHQFMEGICKRL
Sbjct: 66 SGEKLTDVINQTNENVKYLPGIKLGRNVVADPDLENAVKDANMLVFVTPHQFMEGICKRL 125
Query: 165 VGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEAT 224
GK+ +A+SLIKGMEVK EGPCMIS+LIS+ LG++CCVLMGANIANEIAVEKFSEAT
Sbjct: 126 EGKIQEGAQALSLIKGMEVKMEGPCMISSLISDLLGINCCVLMGANIANEIAVEKFSEAT 185
Query: 225 VGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTK 284
VG+R+NR+IAEKWVQLFSTPYFMV+AV+DVEGVELCGTLKN+VAIAAGFVDGLEMGNNTK
Sbjct: 186 VGFRENRDIAEKWVQLFSTPYFMVSAVEDVEGVELCGTLKNIVAIAAGFVDGLEMGNNTK 245
Query: 285 AAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRS 344
AAIMRIGLREM+AFSKLLF SVKD+TFFESCGVADLITTCLGGRNRKVAEAFAKN GKRS
Sbjct: 246 AAIMRIGLREMKAFSKLLFPSVKDTTFFESCGVADLITTCLGGRNRKVAEAFAKNGGKRS 305
Query: 345 FDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSE 404
FDDLEAEML+GQKLQGVSTA+EVYEVL HRGWLELFPLF+TVHEI G LPPSAIVEYSE
Sbjct: 306 FDDLEAEMLRGQKLQGVSTAKEVYEVLGHRGWLELFPLFSTVHEISTGRLPPSAIVEYSE 365
Query: 405 RKPRLS 410
+K S
Sbjct: 366 QKTIFS 371
|
Cuphea lanceolata (taxid: 3930) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8 |
| >sp|Q9SCX9|GPDA1_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] 1, chloroplastic OS=Arabidopsis thaliana GN=DHAPRD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 632 bits (1630), Expect = e-180, Method: Compositional matrix adjust.
Identities = 306/373 (82%), Positives = 335/373 (89%), Gaps = 8/373 (2%)
Query: 34 MAPAFEDNNSETLPSSFSSGSDDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDE 93
M+PA E + + G +D KSKVTVVGSGNWGSVA+KLIASN L+L SFHDE
Sbjct: 35 MSPALEKSRQG------NGGCNDD--SKSKVTVVGSGNWGSVAAKLIASNALKLPSFHDE 86
Query: 94 VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTP 153
VRMWVFEE LP+GEKL DVIN+TNENVKYLPGIKLG+NVVADPDLENAVKDANMLVFVTP
Sbjct: 87 VRMWVFEEVLPNGEKLNDVINKTNENVKYLPGIKLGRNVVADPDLENAVKDANMLVFVTP 146
Query: 154 HQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIAN 213
HQFM+GICK+L GK+ GDVEAISL+KGMEVK+EGPCMIS+LIS+QLG++CCVLMGANIAN
Sbjct: 147 HQFMDGICKKLDGKITGDVEAISLVKGMEVKKEGPCMISSLISKQLGINCCVLMGANIAN 206
Query: 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGF 273
EIAVEKFSEATVGYR +REIA+ WVQLFSTPYFMVT V DVEGVELCGTLKNVVAIAAGF
Sbjct: 207 EIAVEKFSEATVGYRGSREIADTWVQLFSTPYFMVTPVHDVEGVELCGTLKNVVAIAAGF 266
Query: 274 VDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVA 333
VDGLEMGNNTKAAIMRIGLREM+A SKLLF SVKDSTFFESCGVAD+ITTCLGGRNR+VA
Sbjct: 267 VDGLEMGNNTKAAIMRIGLREMKALSKLLFPSVKDSTFFESCGVADVITTCLGGRNRRVA 326
Query: 334 EAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGH 393
EAFAK+ GKRSFD+LEAEMLQGQKLQGVSTAREVYEVL H GWLE+FPLF+TVH+IC G
Sbjct: 327 EAFAKSRGKRSFDELEAEMLQGQKLQGVSTAREVYEVLKHCGWLEMFPLFSTVHQICTGR 386
Query: 394 LPPSAIVEYSERK 406
L P AIV+Y E K
Sbjct: 387 LQPEAIVQYRENK 399
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q5EA88|GPDA_BOVIN Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Bos taurus GN=GPD1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 182/347 (52%), Positives = 240/347 (69%), Gaps = 5/347 (1%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K++ N +L+ F V MWVFEE + G KLT++IN +ENVKY
Sbjct: 5 KVCIVGSGNWGSAIAKIVGGNAAQLAHFDPRVTMWVFEEDI-GGRKLTEIINTQHENVKY 63
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL NVVA PD+ A DA++L+FV PHQF+ IC +L G + D +SLIKG++
Sbjct: 64 LPGHKLPPNVVAVPDVVQAAADADILIFVVPHQFIGKICDQLKGHLKADTIGVSLIKGVD 123
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
+G +IS +I E+LG+ VLMGANIANE+A EKF E T+G + N+ + +L
Sbjct: 124 EGPKGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGSK-NQAHGQLLKELMQ 182
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T VQ+V+ VE+CG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+KL
Sbjct: 183 TPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLF 242
Query: 303 FS-SVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
S SV +TF ESCGVADLITTC GGRNRKVAEAFA+ +S + LE EML GQKLQG
Sbjct: 243 CSGSVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKEMLNGQKLQGP 300
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKPR 408
TARE++ +L H+G ++ FPLF V+++C + P + + P
Sbjct: 301 QTARELHSILQHKGMVDKFPLFTAVYKVCYENQPVGEFIHCLQNHPE 347
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|P21695|GPDA_HUMAN Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Homo sapiens GN=GPD1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 181/347 (52%), Positives = 239/347 (68%), Gaps = 5/347 (1%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K++ N +L+ F V MWVFEE + G+KLT++IN +ENVKY
Sbjct: 5 KVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDI-GGKKLTEIINTQHENVKY 63
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL NVVA PD+ A +DA++L+FV PHQF+ IC +L G + + ISLIKG++
Sbjct: 64 LPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD 123
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
G +IS +I E+LG+ VLMGANIA+E+A EKF E T+G +D + + +L
Sbjct: 124 EGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQ-GQLLKELMQ 182
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T VQ+V+ VE+CG LKNVVA+ AGF DGL G+NTKAA++R+GL EM AF+KL
Sbjct: 183 TPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLF 242
Query: 303 FSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
S V +TF ESCGVADLITTC GGRNRKVAEAFA+ +S + LE E+L GQKLQG
Sbjct: 243 CSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKELLNGQKLQGP 300
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKPR 408
TARE+Y +L H+G ++ FPLF V+++C P + + P
Sbjct: 301 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPE 347
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q5R5V3|GPD1L_PONAB Glycerol-3-phosphate dehydrogenase 1-like protein OS=Pongo abelii GN=GPD1L PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 180/346 (52%), Positives = 238/346 (68%), Gaps = 5/346 (1%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K+I +N +L F V+MWVFEET+ +G KLTD+IN +ENVKY
Sbjct: 7 KVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETV-NGRKLTDIINNDHENVKY 65
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL +NVVA +L AV+DA++LVFV PHQF+ IC + G+V I+LIKG++
Sbjct: 66 LPGHKLPENVVAISNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGID 125
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
EG +IS +I E++G+ VLMGANIANE+A EKF E T+G + E + +L
Sbjct: 126 EGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSK-VMENGLLFKELLQ 184
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T V D + VELCG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+++
Sbjct: 185 TPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARIF 244
Query: 303 F-SSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
V +TF ESCGVADLITTC GGRNR+VAEAFA+ ++ ++LE EML GQKLQG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFART--GKTIEELEKEMLNGQKLQGP 302
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
T+ EVY +L +G L+ FPLF V++IC P ++ + P
Sbjct: 303 QTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQGMLSCLQSHP 348
|
Plays a role in regulating cardiac sodium current; decreased enzymatic activity with resulting increased levels of glycerol 3-phosphate activating the DPD1L-dependent SCN5A phosphorylation pathway, may ultimately lead to decreased sodium current; cardiac sodium current may also be reduced due to alterations of NAD(H) balance induced by DPD1L. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q8N335|GPD1L_HUMAN Glycerol-3-phosphate dehydrogenase 1-like protein OS=Homo sapiens GN=GPD1L PE=1 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 180/346 (52%), Positives = 238/346 (68%), Gaps = 5/346 (1%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K+I +N +L F V+MWVFEET+ +G KLTD+IN +ENVKY
Sbjct: 7 KVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETV-NGRKLTDIINNDHENVKY 65
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL +NVVA +L AV+DA++LVFV PHQF+ IC + G+V I+LIKG++
Sbjct: 66 LPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGID 125
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
EG +IS +I E++G+ VLMGANIANE+A EKF E T+G + E + +L
Sbjct: 126 EGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSK-VMENGLLFKELLQ 184
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T V D + VELCG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+++
Sbjct: 185 TPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARIF 244
Query: 303 FS-SVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
V +TF ESCGVADLITTC GGRNR+VAEAFA+ ++ ++LE EML GQKLQG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFART--GKTIEELEKEMLNGQKLQGP 302
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
T+ EVY +L +G L+ FPLF V++IC P ++ + P
Sbjct: 303 QTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHP 348
|
Plays a role in regulating cardiac sodium current; decreased enzymatic activity with resulting increased levels of glycerol 3-phosphate activating the DPD1L-dependent SCN5A phosphorylation pathway, may ultimately lead to decreased sodium current; cardiac sodium current may also be reduced due to alterations of NAD(H) balance induced by DPD1L. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q6P824|GPD1L_XENTR Glycerol-3-phosphate dehydrogenase 1-like protein OS=Xenopus tropicalis GN=gpd1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 180/347 (51%), Positives = 239/347 (68%), Gaps = 5/347 (1%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K+I N L F V MWVFEE + +G KLT++IN +ENVKY
Sbjct: 8 KVCIVGSGNWGSAVAKIIGHNVKNLKKFASTVNMWVFEENI-NGRKLTEIINTEHENVKY 66
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL +NVVA P+L +AVKDA++L+FV PHQF+ IC+ + GKV+ + I+LIKG++
Sbjct: 67 LPGYKLPENVVAVPNLSDAVKDADLLIFVIPHQFIHKICQEISGKVHRNALGITLIKGID 126
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
EG +IS +I E++ + VLMGANIANE+A EKF E T+G + N+E + +L
Sbjct: 127 EGPEGLRLISDIIREKMDIDVSVLMGANIANEVAAEKFCETTIGSK-NKEHGLLFKELLQ 185
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T V+D + VELCG LKN+VA+AAGF DGL G+NTKAA++R+GL EM AF+ +
Sbjct: 186 TPNFRITVVEDADTVELCGALKNIVAVAAGFCDGLGCGDNTKAAVIRLGLMEMIAFANVF 245
Query: 303 FSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
V +TF ESCGVADLITTC GGRNRKV+EAF K+ +S ++LE EML GQKLQG
Sbjct: 246 CKGPVSIATFLESCGVADLITTCYGGRNRKVSEAFVKS--GKSIEELEKEMLNGQKLQGP 303
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKPR 408
T+ EVY +L + + FPLF V++IC P ++ + P
Sbjct: 304 QTSAEVYRILQQKNMVNKFPLFTAVYQICYEGKPVEDVISCLQSHPE 350
|
Plays a role in regulating cardiac sodium current. Xenopus tropicalis (taxid: 8364) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|P13707|GPDA_MOUSE Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Mus musculus GN=Gpd1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 182/346 (52%), Positives = 237/346 (68%), Gaps = 5/346 (1%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K++ SN RL+ F V MWVFEE + G KLT++IN +ENVKY
Sbjct: 5 KVCIVGSGNWGSAIAKIVGSNAGRLAHFDPRVTMWVFEEDI-GGRKLTEIINTQHENVKY 63
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL NVVA PD+ A A++LVFV PHQF+ IC +L G + + ISLIKG++
Sbjct: 64 LPGHKLPPNVVAIPDVVQAATGADILVFVVPHQFIGKICDQLKGHLKANTIGISLIKGVD 123
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
G +IS +I E+LG+ VLMGANIA+E+A EKF E T+G +D + + L
Sbjct: 124 EGPNGLKLISEVIGERLGIPMSVLMGANIASEVAEEKFCETTIGCKDPAQ-GQLLKDLMQ 182
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T VQ+V+ VE+CG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+KL
Sbjct: 183 TPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLF 242
Query: 303 FS-SVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
S +V +TF ESCGVADLITTC GGRNRKVAEAFA+ +S + LE EML GQKLQG
Sbjct: 243 CSGTVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKEMLNGQKLQGP 300
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
TARE++ +L H+G ++ FPLF V+++C P + + P
Sbjct: 301 QTARELHSILQHKGLVDKFPLFTAVYKVCYEGQPVGEFIRCLQNHP 346
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q5RCE0|GPDA_PONAB Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Pongo abelii GN=GPD1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 180/347 (51%), Positives = 237/347 (68%), Gaps = 5/347 (1%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K++ N +L+ F V MWVFEE + G+KLT++IN +ENVKY
Sbjct: 5 KVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDI-GGKKLTEIINTQHENVKY 63
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL NVVA PD+ A DA++L+FV PHQF+ IC +L G + + ISLIKG++
Sbjct: 64 LPGHKLPPNVVAVPDVVQAAADADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD 123
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
G +IS +I E LG+ VLMGANIA+E+A EKF E T+G +D + + +L
Sbjct: 124 EGPNGLKLISEVIGEHLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQ-GQLLKELMQ 182
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T VQ+V+ VE+CG LKNVVA+ AGF DGL G+NTKAA++R+GL EM AF+KL
Sbjct: 183 TPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLF 242
Query: 303 FSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
S V +TF ESCGVADLITTC GGRNRKVAEAFA+ +S + LE E+L GQKLQG
Sbjct: 243 RSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKELLNGQKLQGP 300
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKPR 408
TARE++ +L H+G ++ FPLF V+++C P + + P
Sbjct: 301 ETARELHSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIRCLQNHPE 347
|
Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q3ULJ0|GPD1L_MOUSE Glycerol-3-phosphate dehydrogenase 1-like protein OS=Mus musculus GN=Gpd1l PE=1 SV=2 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/346 (51%), Positives = 239/346 (69%), Gaps = 5/346 (1%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K+I SN L F V+MWVFEET+ +G KLTD+IN +ENVKY
Sbjct: 7 KVCIVGSGNWGSAVAKIIGSNVKTLQKFSSTVKMWVFEETV-NGRKLTDIINNDHENVKY 65
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL +NVVA P+L AV+DA++LVFV PHQF+ IC + G+V I+LIKG++
Sbjct: 66 LPGHKLPENVVAVPNLSEAVQDADLLVFVIPHQFIHKICDEITGRVPEKALGITLIKGID 125
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
+G +IS +I E++G+ VLMGANIA+E+A EKF E T+G + + + +L
Sbjct: 126 EGPDGLKLISDIIREKMGIDISVLMGANIASEVAAEKFCETTIGSKVMQN-GLLFKELLQ 184
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T V D + VELCG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+K+
Sbjct: 185 TPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFAKIF 244
Query: 303 F-SSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
V +TF ESCGVADLITTC GGRNR+VAEAFA+ ++ ++LE E+L GQKLQG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFART--GKTIEELEKELLNGQKLQGP 302
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
T+ EVY +L +G L+ FPLF V++IC P + ++ + P
Sbjct: 303 QTSAEVYRILRQKGLLDKFPLFTAVYQICYEGRPVTQMLSCLQSHP 348
|
Plays a role in regulating cardiac sodium current; decreased enzymatic activity with resulting increased levels of glycerol 3-phosphate activating the DPD1L-dependent SCN5A phosphorylation pathway, may ultimately lead to decreased sodium current; cardiac sodium current may also be reduced due to alterations of NAD(H) balance induced by DPD1L. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 419 | ||||||
| TAIR|locus:2168758 | 400 | GPDHp "Glycerol-3-phosphate de | 0.871 | 0.912 | 0.820 | 9.3e-162 | |
| UNIPROTKB|Q5EA88 | 349 | GPD1 "Glycerol-3-phosphate deh | 0.813 | 0.977 | 0.531 | 3e-92 | |
| UNIPROTKB|J9NS24 | 434 | GPD1L "Uncharacterized protein | 0.813 | 0.785 | 0.528 | 2.1e-91 | |
| UNIPROTKB|P21695 | 349 | GPD1 "Glycerol-3-phosphate deh | 0.813 | 0.977 | 0.528 | 2.1e-91 | |
| UNIPROTKB|F1P0W8 | 380 | GPD1L "Uncharacterized protein | 0.813 | 0.897 | 0.523 | 1.2e-90 | |
| MGI|MGI:95679 | 349 | Gpd1 "glycerol-3-phosphate deh | 0.813 | 0.977 | 0.531 | 1.9e-90 | |
| UNIPROTKB|Q8N335 | 351 | GPD1L "Glycerol-3-phosphate de | 0.813 | 0.971 | 0.526 | 3.1e-90 | |
| UNIPROTKB|I3LLU0 | 351 | GPD1L "Uncharacterized protein | 0.813 | 0.971 | 0.528 | 3.1e-90 | |
| RGD|621381 | 349 | Gpd1 "glycerol-3-phosphate deh | 0.773 | 0.928 | 0.553 | 3.1e-90 | |
| UNIPROTKB|A6QQR7 | 351 | GPD1L "GPD1L protein" [Bos tau | 0.813 | 0.971 | 0.528 | 4e-90 |
| TAIR|locus:2168758 GPDHp "Glycerol-3-phosphate dehydrogenase plastidic" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1575 (559.5 bits), Expect = 9.3e-162, P = 9.3e-162
Identities = 306/373 (82%), Positives = 335/373 (89%)
Query: 34 MAPAFEDNNSETLPSSFSSGSDDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDE 93
M+PA E + + G +D KSKVTVVGSGNWGSVA+KLIASN L+L SFHDE
Sbjct: 35 MSPALEKSRQG------NGGCNDD--SKSKVTVVGSGNWGSVAAKLIASNALKLPSFHDE 86
Query: 94 VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTP 153
VRMWVFEE LP+GEKL DVIN+TNENVKYLPGIKLG+NVVADPDLENAVKDANMLVFVTP
Sbjct: 87 VRMWVFEEVLPNGEKLNDVINKTNENVKYLPGIKLGRNVVADPDLENAVKDANMLVFVTP 146
Query: 154 HQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIAN 213
HQFM+GICK+L GK+ GDVEAISL+KGMEVK+EGPCMIS+LIS+QLG++CCVLMGANIAN
Sbjct: 147 HQFMDGICKKLDGKITGDVEAISLVKGMEVKKEGPCMISSLISKQLGINCCVLMGANIAN 206
Query: 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGF 273
EIAVEKFSEATVGYR +REIA+ WVQLFSTPYFMVT V DVEGVELCGTLKNVVAIAAGF
Sbjct: 207 EIAVEKFSEATVGYRGSREIADTWVQLFSTPYFMVTPVHDVEGVELCGTLKNVVAIAAGF 266
Query: 274 VDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVA 333
VDGLEMGNNTKAAIMRIGLREM+A SKLLF SVKDSTFFESCGVAD+ITTCLGGRNR+VA
Sbjct: 267 VDGLEMGNNTKAAIMRIGLREMKALSKLLFPSVKDSTFFESCGVADVITTCLGGRNRRVA 326
Query: 334 EAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGH 393
EAFAK+ GKRSFD+LEAEMLQGQKLQGVSTAREVYEVL H GWLE+FPLF+TVH+IC G
Sbjct: 327 EAFAKSRGKRSFDELEAEMLQGQKLQGVSTAREVYEVLKHCGWLEMFPLFSTVHQICTGR 386
Query: 394 LPPSAIVEYSERK 406
L P AIV+Y E K
Sbjct: 387 LQPEAIVQYRENK 399
|
|
| UNIPROTKB|Q5EA88 GPD1 "Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 184/346 (53%), Positives = 241/346 (69%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K++ N +L+ F V MWVFEE + G KLT++IN +ENVKY
Sbjct: 5 KVCIVGSGNWGSAIAKIVGGNAAQLAHFDPRVTMWVFEEDI-GGRKLTEIINTQHENVKY 63
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL NVVA PD+ A DA++L+FV PHQF+ IC +L G + D +SLIKG++
Sbjct: 64 LPGHKLPPNVVAVPDVVQAAADADILIFVVPHQFIGKICDQLKGHLKADTIGVSLIKGVD 123
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
+G +IS +I E+LG+ VLMGANIANE+A EKF E T+G + N+ + +L
Sbjct: 124 EGPKGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGSK-NQAHGQLLKELMQ 182
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T VQ+V+ VE+CG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+KL
Sbjct: 183 TPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLF 242
Query: 303 FS-SVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
S SV +TF ESCGVADLITTC GGRNRKVAEAFA+ GK S + LE EML GQKLQG
Sbjct: 243 CSGSVSSATFLESCGVADLITTCYGGRNRKVAEAFART-GK-SIEQLEKEMLNGQKLQGP 300
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
TARE++ +L H+G ++ FPLF V+++C + P + + P
Sbjct: 301 QTARELHSILQHKGMVDKFPLFTAVYKVCYENQPVGEFIHCLQNHP 346
|
|
| UNIPROTKB|J9NS24 GPD1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 183/346 (52%), Positives = 242/346 (69%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K+I +N +L+ F V+MWVFEET+ +G KLTD+IN +ENVKY
Sbjct: 90 KVCIVGSGNWGSAVAKIIGNNVKKLTKFASTVKMWVFEETV-NGRKLTDIINNDHENVKY 148
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL +NV+A P+L AVKDA++LVFV PHQF+ IC L G+V D I+LIKG++
Sbjct: 149 LPGHKLPENVIAVPNLGEAVKDADLLVFVIPHQFIHRICDELTGRVPKDALGITLIKGID 208
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
EG +IS +I E++G+ VLMGANIA+E+A EKF E T+G + E + +L
Sbjct: 209 EGPEGLKLISDIIREKMGIDVSVLMGANIASEVAAEKFCETTIGSKI-MENGLLFKELLQ 267
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T V D + VELCG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+++
Sbjct: 268 TPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLHSGDNTKAAVIRLGLMEMIAFARIF 327
Query: 303 FSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
V +TF ESCGVADLITTC GGRNR+VAEAFA+ GK + ++LE EML GQKLQG
Sbjct: 328 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFART-GK-TIEELEKEMLNGQKLQGP 385
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
T+ EVY +L +G ++ FPLF V++IC P ++ + P
Sbjct: 386 QTSAEVYRILKQKGMVDKFPLFTAVYQICYEGKPVQEMLSCLQSHP 431
|
|
| UNIPROTKB|P21695 GPD1 "Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 183/346 (52%), Positives = 240/346 (69%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K++ N +L+ F V MWVFEE + G+KLT++IN +ENVKY
Sbjct: 5 KVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDI-GGKKLTEIINTQHENVKY 63
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL NVVA PD+ A +DA++L+FV PHQF+ IC +L G + + ISLIKG++
Sbjct: 64 LPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD 123
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
G +IS +I E+LG+ VLMGANIA+E+A EKF E T+G +D + + +L
Sbjct: 124 EGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQ-GQLLKELMQ 182
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T VQ+V+ VE+CG LKNVVA+ AGF DGL G+NTKAA++R+GL EM AF+KL
Sbjct: 183 TPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLF 242
Query: 303 FSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
S V +TF ESCGVADLITTC GGRNRKVAEAFA+ GK S + LE E+L GQKLQG
Sbjct: 243 CSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFART-GK-SIEQLEKELLNGQKLQGP 300
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
TARE+Y +L H+G ++ FPLF V+++C P + + P
Sbjct: 301 ETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHP 346
|
|
| UNIPROTKB|F1P0W8 GPD1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 181/346 (52%), Positives = 237/346 (68%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
+V +VGSGNWGS +K+I +N +L F V+MWVFEE + +G KLTD+IN +ENVKY
Sbjct: 36 RVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEENI-NGRKLTDIINNEHENVKY 94
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL NVVA P+L AV+DA++LVFV PHQF+ +C + G+V I+LIKG++
Sbjct: 95 LPGYKLPDNVVAVPNLNEAVQDADLLVFVVPHQFIHKVCDEITGRVPKKALGITLIKGID 154
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
EG +IS +I E++G+ VLMGANIANE+A EKF E T+G + E + +L
Sbjct: 155 EGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKI-LENGLLFKELLQ 213
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T V D + VELCG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+++
Sbjct: 214 TPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARIF 273
Query: 303 FSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
V +TF ESCGVADLITTC GGRNR+VAEAF K GK S ++LE EML GQKLQG
Sbjct: 274 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFVKT-GK-SIEELEQEMLNGQKLQGP 331
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
T+ EVY +L +G L+ FPLF V++IC P ++ + P
Sbjct: 332 QTSAEVYRILKQKGMLDKFPLFTAVYQICYEGKPVKEMISCLQSHP 377
|
|
| MGI|MGI:95679 Gpd1 "glycerol-3-phosphate dehydrogenase 1 (soluble)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 184/346 (53%), Positives = 238/346 (68%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K++ SN RL+ F V MWVFEE + G KLT++IN +ENVKY
Sbjct: 5 KVCIVGSGNWGSAIAKIVGSNAGRLAHFDPRVTMWVFEEDI-GGRKLTEIINTQHENVKY 63
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL NVVA PD+ A A++LVFV PHQF+ IC +L G + + ISLIKG++
Sbjct: 64 LPGHKLPPNVVAIPDVVQAATGADILVFVVPHQFIGKICDQLKGHLKANTIGISLIKGVD 123
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
G +IS +I E+LG+ VLMGANIA+E+A EKF E T+G +D + + L
Sbjct: 124 EGPNGLKLISEVIGERLGIPMSVLMGANIASEVAEEKFCETTIGCKDPAQ-GQLLKDLMQ 182
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T VQ+V+ VE+CG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+KL
Sbjct: 183 TPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLF 242
Query: 303 FS-SVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
S +V +TF ESCGVADLITTC GGRNRKVAEAFA+ GK S + LE EML GQKLQG
Sbjct: 243 CSGTVSSATFLESCGVADLITTCYGGRNRKVAEAFART-GK-SIEQLEKEMLNGQKLQGP 300
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
TARE++ +L H+G ++ FPLF V+++C P + + P
Sbjct: 301 QTARELHSILQHKGLVDKFPLFTAVYKVCYEGQPVGEFIRCLQNHP 346
|
|
| UNIPROTKB|Q8N335 GPD1L "Glycerol-3-phosphate dehydrogenase 1-like protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 182/346 (52%), Positives = 239/346 (69%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K+I +N +L F V+MWVFEET+ +G KLTD+IN +ENVKY
Sbjct: 7 KVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETV-NGRKLTDIINNDHENVKY 65
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL +NVVA +L AV+DA++LVFV PHQF+ IC + G+V I+LIKG++
Sbjct: 66 LPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGID 125
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
EG +IS +I E++G+ VLMGANIANE+A EKF E T+G + E + +L
Sbjct: 126 EGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKV-MENGLLFKELLQ 184
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T V D + VELCG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+++
Sbjct: 185 TPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARIF 244
Query: 303 FSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
V +TF ESCGVADLITTC GGRNR+VAEAFA+ GK + ++LE EML GQKLQG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFART-GK-TIEELEKEMLNGQKLQGP 302
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
T+ EVY +L +G L+ FPLF V++IC P ++ + P
Sbjct: 303 QTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHP 348
|
|
| UNIPROTKB|I3LLU0 GPD1L "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 183/346 (52%), Positives = 238/346 (68%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K+I N +L F V+MWVFEET+ +G KLTD+IN +ENVKY
Sbjct: 7 KVCIVGSGNWGSAVAKIIGDNVKKLQKFASTVKMWVFEETV-NGRKLTDIINNDHENVKY 65
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL +NVVA +L AVKDA++LVFV PHQF+ IC + G+V D I+LIKG++
Sbjct: 66 LPGHKLPENVVAVANLGEAVKDADLLVFVIPHQFIHRICDEITGRVPKDALGITLIKGID 125
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
EG +IS +I E++G+ VLMGANIANE+A KF E T+G + E + +L
Sbjct: 126 EGPEGLKLISDIIREKMGIDISVLMGANIANEVAAGKFCETTIGSKV-MENGLLFKELLQ 184
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T V D + VELCG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+++
Sbjct: 185 TPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARIF 244
Query: 303 FSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
V +TF ESCGVADLITTC GGRNR+VAEAFA+ GK + ++LE EML GQKLQG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFART-GK-TIEELEKEMLNGQKLQGP 302
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
TA EVY +L +G ++ FPLF V++IC P ++ + P
Sbjct: 303 QTAAEVYRILKQKGLVDKFPLFTAVYQICYEGRPVQEMLSCLQSHP 348
|
|
| RGD|621381 Gpd1 "glycerol-3-phosphate dehydrogenase 1 (soluble)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 182/329 (55%), Positives = 234/329 (71%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K++ SN +L+ F V MWVFEE + G KLT++IN +ENVKY
Sbjct: 5 KVCIVGSGNWGSAIAKIVGSNASQLAHFDPRVTMWVFEEDI-GGRKLTEIINTQHENVKY 63
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL NVVA PD+ A A++LVFV PHQF+ IC +L G + + ISLIKG++
Sbjct: 64 LPGHKLPPNVVAVPDVVQAATGADILVFVVPHQFIGKICDQLKGHLKANTIGISLIKGID 123
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
G +IS +I E LG+ VLMGANIA+E+A EKF E T+G +D + + +L
Sbjct: 124 EGPNGLKLISEVIGESLGIPMSVLMGANIASEVAEEKFCETTIGCKDPAQ-GQLLKELMQ 182
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T VQ+V+ VE+CG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+KL
Sbjct: 183 TPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLF 242
Query: 303 FS-SVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
S SV +TF ESCGVADLITTC GGRNRKVAEAFA+ GK S + LE EML GQKLQG
Sbjct: 243 CSGSVSSATFLESCGVADLITTCYGGRNRKVAEAFART-GK-SIEQLEKEMLNGQKLQGP 300
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEIC 390
TARE++ +L H+G ++ FPLF V+++C
Sbjct: 301 QTARELHSILQHKGLVDKFPLFTAVYKVC 329
|
|
| UNIPROTKB|A6QQR7 GPD1L "GPD1L protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
Identities = 183/346 (52%), Positives = 239/346 (69%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV +VGSGNWGS +K+I +N +L F V+MWVFEET+ +G KLTD+IN +ENVKY
Sbjct: 7 KVCIVGSGNWGSAVAKIIGNNVRKLQKFASTVKMWVFEETV-NGRKLTDIINNDHENVKY 65
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPG KL +NVVA +L AV+DA++LVFV PHQF+ IC + G+V D I+LIKG++
Sbjct: 66 LPGHKLPENVVAVANLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKDALGITLIKGID 125
Query: 183 VKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS 242
EG +IS +I E++G+ VLMGANIANE+A KF E T+G + E + +L
Sbjct: 126 EGPEGLKLISDIIREKMGIDISVLMGANIANEVAAGKFCETTIGSKI-MENGLLFKELLQ 184
Query: 243 TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302
TP F +T V D + VELCG LKN+VA+ AGF DGL G+NTKAA++R+GL EM AF+++
Sbjct: 185 TPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLLCGDNTKAAVIRLGLMEMIAFARIF 244
Query: 303 FSS-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361
V +TF ESCGVADLITTC GGRNRKVAEAFA+ GK + ++LE EML GQKLQG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRKVAEAFART-GK-TIEELEKEMLNGQKLQGP 302
Query: 362 STAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
T+ EVY +L +G L+ FPLF V++IC P ++ + P
Sbjct: 303 QTSAEVYRILKQKGLLDKFPLFTAVYQICYEGRPVQEMLSCLQSHP 348
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q801R8 | GPD1L_XENLA | 1, ., 1, ., 1, ., 8 | 0.5129 | 0.8162 | 0.9715 | N/A | no |
| P34517 | GPDH2_CAEEL | 1, ., 1, ., 1, ., 8 | 0.4708 | 0.8615 | 0.9209 | yes | no |
| Q5EA88 | GPDA_BOVIN | 1, ., 1, ., 1, ., 8 | 0.5244 | 0.8162 | 0.9799 | yes | no |
| Q6P824 | GPD1L_XENTR | 1, ., 1, ., 1, ., 8 | 0.5187 | 0.8162 | 0.9715 | yes | no |
| Q5R5V3 | GPD1L_PONAB | 1, ., 1, ., 1, ., 8 | 0.5202 | 0.8138 | 0.9715 | yes | no |
| Q9HGY1 | GPD2_ZYGRO | 1, ., 1, ., 1, ., 8 | 0.4475 | 0.8019 | 0.8637 | yes | no |
| Q9HGY2 | GPD1_ZYGRO | 1, ., 1, ., 1, ., 8 | 0.4419 | 0.8019 | 0.8379 | yes | no |
| P52425 | GPDA_CUPLA | 1, ., 1, ., 1, ., 8 | 0.8524 | 0.8663 | 0.9758 | N/A | no |
| P08507 | GPDA_RABIT | 1, ., 1, ., 1, ., 8 | 0.5043 | 0.8162 | 0.9799 | yes | no |
| O57656 | GPDA_TAKRU | 1, ., 1, ., 1, ., 8 | 0.5086 | 0.8162 | 0.9743 | N/A | no |
| Q9SCX9 | GPDA1_ARATH | 1, ., 1, ., 1, ., 8 | 0.8203 | 0.8711 | 0.9125 | yes | no |
| Q27928 | GPDA_DROPS | 1, ., 1, ., 1, ., 8 | 0.4913 | 0.8186 | 0.9527 | yes | no |
| Q5XIZ6 | GPD1L_DANRE | 1, ., 1, ., 1, ., 8 | 0.5158 | 0.8138 | 0.9715 | yes | no |
| P21696 | GPD1_SCHPO | 1, ., 1, ., 1, ., 8 | 0.4651 | 0.8305 | 0.9038 | yes | no |
| O35077 | GPDA_RAT | 1, ., 1, ., 1, ., 8 | 0.5471 | 0.7732 | 0.9283 | yes | no |
| P21695 | GPDA_HUMAN | 1, ., 1, ., 1, ., 8 | 0.5216 | 0.8162 | 0.9799 | yes | no |
| Q6FWJ7 | GPD2_CANGA | 1, ., 1, ., 1, ., 8 | 0.4630 | 0.8090 | 0.8033 | yes | no |
| P13707 | GPDA_MOUSE | 1, ., 1, ., 1, ., 8 | 0.5260 | 0.8138 | 0.9770 | yes | no |
| P13706 | GPDA_DROME | 1, ., 1, ., 1, ., 8 | 0.4971 | 0.8186 | 0.9449 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| gw1.XVII.642.1 | hypothetical protein (345 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_Genewise1_v1.C_290280 | glycerol-3-phosphate O-acyltransferase (EC-2.3.1.15) (392 aa) | • | 0.900 | ||||||||
| fgenesh4_pm.C_LG_X000808 | 1-acylglycerol-3-phosphate O-acyltransferase (EC-2.3.1.51) (488 aa) | • | 0.899 | ||||||||
| fgenesh4_pm.C_LG_VIII000213 | 1-acylglycerol-3-phosphate O-acyltransferase (EC-2.3.1.51) (489 aa) | • | 0.899 | ||||||||
| fgenesh4_pg.C_LG_II001856 | hypothetical protein (478 aa) | • | 0.899 | ||||||||
| eugene3.00060847 | glycerol-3-phosphate acyltransferase (EC-2.3.1.51) (497 aa) | • | 0.899 | ||||||||
| eugene3.00051090 | hypothetical protein (542 aa) | • | 0.899 | ||||||||
| estExt_fgenesh4_pm.C_LG_XVI0406 | SubName- Full=Putative uncharacterized protein; (501 aa) | • | 0.899 | ||||||||
| estExt_fgenesh4_pm.C_LG_XIV0124 | hypothetical protein (500 aa) | • | 0.899 | ||||||||
| estExt_fgenesh4_pm.C_LG_IV0573 | glycerol acyltransferase family protein (375 aa) | • | 0.899 | ||||||||
| estExt_fgenesh4_pg.C_LG_IX0244 | glycerol acyltransferase family protein (375 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 419 | |||
| TIGR03376 | 342 | TIGR03376, glycerol3P_DH, glycerol-3-phosphate deh | 0.0 | |
| PTZ00345 | 365 | PTZ00345, PTZ00345, glycerol-3-phosphate dehydroge | 1e-166 | |
| COG0240 | 329 | COG0240, GpsA, Glycerol-3-phosphate dehydrogenase | 1e-103 | |
| PRK00094 | 325 | PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosp | 8e-71 | |
| pfam07479 | 145 | pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol- | 7e-63 | |
| pfam01210 | 157 | pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol- | 5e-53 | |
| PRK12439 | 341 | PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-p | 3e-39 | |
| PRK14618 | 328 | PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-p | 1e-36 | |
| PRK14619 | 308 | PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-p | 5e-25 | |
| PRK14620 | 326 | PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-p | 7e-25 |
| >gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Score = 531 bits (1369), Expect = 0.0
Identities = 192/345 (55%), Positives = 241/345 (69%), Gaps = 7/345 (2%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLS-SFHDEVRMWVFEETLPSGEKLTDVINRTNENVK 121
+V VVGSGNWG+ +K++A N L F + VRMWVFEE G LT++IN T+ENVK
Sbjct: 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEE-IEGRNLTEIINTTHENVK 59
Query: 122 YLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181
YLPGIKL N+VA PDL A K A++LVFV PHQF+EGICK+L G V + AIS IKG+
Sbjct: 60 YLPGIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGL 119
Query: 182 EVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNRE---IAEKWV 238
EV ++G ++S +I E+LG+ C VL GAN+ANE+A EKFSE TVGYRD + A
Sbjct: 120 EVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLK 179
Query: 239 QLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298
LF PYF V V DV GVE+ G LKNVVAIAAGFVDGL G+N KAA+MR GL EM F
Sbjct: 180 ALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKF 239
Query: 299 SKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKL 358
+++ F + + + FESCGVADLITTCLGGRN KV AFAK +S ++LE E+L GQ L
Sbjct: 240 ARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKT--GKSLEELEKELLNGQSL 297
Query: 359 QGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYS 403
QGV+TA+EV+E+L ++ + FPLF V++I LPP + E
Sbjct: 298 QGVATAKEVHELLKNKNKDDEFPLFEAVYQILYEGLPPKKLPECL 342
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. Length = 342 |
| >gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 469 bits (1209), Expect = e-166
Identities = 183/340 (53%), Positives = 243/340 (71%), Gaps = 4/340 (1%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV+V+GSGNWGS SK++ NT R FH+EVRMWV EE + GEKL+D+IN +ENVKY
Sbjct: 13 KVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV-EGEKLSDIINTKHENVKY 71
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLV--GKVNGDVEAISLIKG 180
LPGIKL N+VA DL+ AV+DA++L+FV PHQF+E + ++ + AISL KG
Sbjct: 72 LPGIKLPDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKG 131
Query: 181 MEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQL 240
+ V+ P + S +I E+LG+ CC L GAN+AN++A E+FSEAT+G D ++ A W +L
Sbjct: 132 IIVENGKPVLCSDVIEEELGIPCCALSGANVANDVAREEFSEATIGCED-KDDALIWQRL 190
Query: 241 FSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSK 300
F PYF + V DV GVE+CG LKN++A+AAGF DGL +G NTK+AI+RIGL EM+ F K
Sbjct: 191 FDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGK 250
Query: 301 LLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQG 360
+ F +V D TFFESCG+ADLITTCLGGRN + A FAK GK+S++++EAE+L GQKLQG
Sbjct: 251 IFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQG 310
Query: 361 VSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIV 400
T +EVYEVL + FPLF ++I PS+++
Sbjct: 311 TVTLKEVYEVLESHDLKKEFPLFTVTYKIAFEGADPSSLI 350
|
Length = 365 |
| >gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 307 bits (789), Expect = e-103
Identities = 123/352 (34%), Positives = 179/352 (50%), Gaps = 29/352 (8%)
Query: 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENV 120
K+ V+G+G+WG+ +K++A N EVR+W +E ++ IN T EN
Sbjct: 1 MMKIAVIGAGSWGTALAKVLARNG-------HEVRLWGRDE------EIVAEINETRENP 47
Query: 121 KYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180
KYLPGI L N+ A DL A+ A+++V P Q + + ++L + D +S KG
Sbjct: 48 KYLPGILLPPNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKG 107
Query: 181 MEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQ 239
+E E ++S +I E+L + VL G + A E+A + V D +E AEK
Sbjct: 108 LE--PETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASND-QEAAEKVQA 164
Query: 240 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFS 299
LFS+PYF V DV GVE+ G LKNV+AIAAG DGL +G+N KAA++ GL EM
Sbjct: 165 LFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLG 224
Query: 300 KLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQK 357
L + + TF G+ DLI TC RNR+ + S D+ E+ GQ
Sbjct: 225 VALGAKPE--TFMGLSGLGDLILTCTSPLSRNRRFGLLLGQGL---SLDEALEEI--GQV 277
Query: 358 LQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEY-SERKPR 408
++GV TA+ VYE+ G P+ V+ + L P +E R +
Sbjct: 278 VEGVRTAKAVYELAKKLG--IEMPITEAVYRVLYEGLDPKEAIEELMGRDLK 327
|
Length = 329 |
| >gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 225 bits (577), Expect = 8e-71
Identities = 113/346 (32%), Positives = 173/346 (50%), Gaps = 29/346 (8%)
Query: 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENV 120
K+ V+G+G+WG+ + ++A N HD V +W + + IN EN
Sbjct: 1 MMKIAVLGAGSWGTALAIVLARN------GHD-VTLWARDP------EQAAEINADRENP 47
Query: 121 KYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180
+YLPGIKL N+ A DL A+ DA++++ P Q + + K+L + D + KG
Sbjct: 48 RYLPGIKLPDNLRATTDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKG 107
Query: 181 MEVKREGPCMISTLISEQLG--VSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWV 238
+E ++S ++ E+L VL G + A E+A + + D E+AE+
Sbjct: 108 IE--PGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD-EELAERVQ 164
Query: 239 QLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298
+LF +PYF V DV GVEL G LKNV+AIAAG DGL +G+N +AA++ GL E+
Sbjct: 165 ELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL 224
Query: 299 SKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQ 356
L TF G+ DL+ TC RNR+ A + + S ++ AE+ G
Sbjct: 225 GVAL--GANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGK---SLEEALAEI--GM 277
Query: 357 KLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEY 402
+GV TA+ VYE+ G +E+ P+ V+ + P VE
Sbjct: 278 VAEGVRTAKAVYELAKKLG-VEM-PITEAVYAVLYEGKDPREAVED 321
|
Length = 325 |
| >gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus | Back alignment and domain information |
|---|
Score = 198 bits (507), Expect = 7e-63
Identities = 72/153 (47%), Positives = 93/153 (60%), Gaps = 11/153 (7%)
Query: 252 QDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTF 311
+DV GVE+ G LKNV+AIAAG +DGL G+NTKAA++ GL EM F L + TF
Sbjct: 1 EDVVGVEIGGALKNVIAIAAGILDGLGFGDNTKAALITRGLMEMIKFGAALGGGPE--TF 58
Query: 312 FESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYE 369
F G+ DLITTC GRNR+V EA K +S +++E E+ GQ +GV TA+EVYE
Sbjct: 59 FGLAGLGDLITTCTSELGRNRRVGEALGK---GKSLEEIEKEL--GQVAEGVKTAKEVYE 113
Query: 370 VLSHRGWLELFPLFATVHEICVGHLPPSAIVEY 402
+ +G FPLF V+ I L P +EY
Sbjct: 114 LAKRKGL--DFPLFTAVYRILYEGLKPEEAIEY 144
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the C-terminal substrate-binding domain. Length = 145 |
| >gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 5e-53
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 16/170 (9%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
K+ V+G+G+WG+ +K++A N EVR+W +E +L + IN T ENVKY
Sbjct: 1 KIAVLGAGSWGTALAKVLARN-------GHEVRLWGRDE------ELIEEINTTRENVKY 47
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
LPGIKL N+ A DLE A+K A+++V P Q + + K+L G ++ +SL KG+E
Sbjct: 48 LPGIKLPDNLRATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPGAILVSLTKGIE 107
Query: 183 VKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVEKFSEATVGYRDNR 231
++S +I E+L + VL G + A E+A+ + V D +
Sbjct: 108 --PGTLKLLSEIIEEELPINPIAVLSGPSHAEEVALGLPTATVVASEDQQ 155
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Length = 157 |
| >gnl|CDD|171500 PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 3e-39
Identities = 102/313 (32%), Positives = 144/313 (46%), Gaps = 32/313 (10%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV V+G G+WG+ + + A L WV + D IN + N +Y
Sbjct: 9 KVVVLGGGSWGTTVASICARRGPTL--------QWV------RSAETADDINDNHRNSRY 54
Query: 123 LP-GIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181
L + L + A D A A+++V P G+ L ++ V +SL+KG+
Sbjct: 55 LGNDVVLSDTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGL 114
Query: 182 EVKREGPCM-ISTLISEQL-GVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQ 239
E +G M +S +I E L G +L G NIA E+A E ++ A V ++ +A +
Sbjct: 115 E---QGTNMRMSQIIEEVLPGHPAGILAGPNIAREVA-EGYAAAAVLAMPDQHLATRLSP 170
Query: 240 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFS 299
LF T F V DV GVE+ G LKNV AIA G L +G NT+A ++ LREM +
Sbjct: 171 LFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREM---T 227
Query: 300 KL-LFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQ 356
KL + TF G+ DLI TC RNR V E + D++ A M Q
Sbjct: 228 KLGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAG---KPIDEIIASM--NQ 282
Query: 357 KLQGVSTAREVYE 369
+GV A V E
Sbjct: 283 VAEGVKAASVVME 295
|
Length = 341 |
| >gnl|CDD|237770 PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 1e-36
Identities = 103/357 (28%), Positives = 156/357 (43%), Gaps = 39/357 (10%)
Query: 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWV----FEETLPSGEKLTDVIN 114
H +V V+G+G WG+ + L AS + VR+W F L +
Sbjct: 2 HHGMRVAVLGAGAWGTALAVLAASKGVP-------VRLWARRPEFAAALAA--------- 45
Query: 115 RTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEA 174
EN +YLPG+ L + D E A+ A+ V P + + + + + +
Sbjct: 46 -ERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPSKAL----RETLAGLPRALGY 100
Query: 175 ISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIA 234
+S KG+ ++ ++ VL G N A EIA ATV +A
Sbjct: 101 VSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIA-RFLPAATVVASPEPGLA 159
Query: 235 EKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLRE 294
+ FS P F V +D GVEL G LKNV+A+AAG VDGL++G+N KAA++ GLRE
Sbjct: 160 RRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLRE 219
Query: 295 MRAFSKLLFSSVKDSTFFESCGVADLITTC--LGGRNRKVAEAFAKNEGKRSFDDLEAEM 352
M F L +++TF+ G+ DLI T RNR EA + D E
Sbjct: 220 MVRFGVAL--GAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGV------DREHLE 271
Query: 353 LQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSA-IVEYSERKPR 408
G+ ++G+ T + + G +L P+ V + G P A + R+ +
Sbjct: 272 AGGKVVEGLYTVKALDAWAKAHG-HDL-PIVEAVARVARGGWDPLAGLRSLMGREAK 326
|
Length = 328 |
| >gnl|CDD|237771 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 5e-25
Identities = 97/354 (27%), Positives = 150/354 (42%), Gaps = 78/354 (22%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
+ ++G+G WGS + L ++N R VR+W +R +
Sbjct: 6 TIAILGAGAWGSTLAGLASANGHR-------VRVW----------------SRRSG---- 38
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGI--CKRLVGKVNGDVEAI--SLI 178
L + DA+++V M+G+ V +N E I +
Sbjct: 39 -------------LSLAAVLADADVIVSAVS---MKGVRPVAEQVQALNLPPETIIVTAT 82
Query: 179 KGMEVKREGPCMISTLISEQLGVSCC------VLMGANIANEIAVEKFSEATVGYRDNRE 232
KG++ P +T Q+ + VL G N++ EI + ATV +
Sbjct: 83 KGLD-----P--ETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQ-QGLPAATVVASRDLA 134
Query: 233 IAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGL 292
AE Q+FS+ F V D G EL GTLKNV+AIAAG DGL++G N KAA++ L
Sbjct: 135 AAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRAL 194
Query: 293 REM-RAFSKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLE 349
EM R + L + TF+ G+ DL+ TC RN +V A+ GK LE
Sbjct: 195 PEMIRVGTHL---GAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGLAQ--GK----SLE 245
Query: 350 A--EMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVE 401
L+G +GV+TA + ++ + P+ V+ + G + P +E
Sbjct: 246 QILAELEGTA-EGVNTANVLVQLAQQQNI--AVPITEQVYRLLQGEITPQQALE 296
|
Length = 308 |
| >gnl|CDD|173083 PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 7e-25
Identities = 80/311 (25%), Positives = 143/311 (45%), Gaps = 26/311 (8%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
K++++G+G++G+ IA + LSS V +W T + IN +N+KY
Sbjct: 2 KISILGAGSFGTA----IA---IALSSKKISVNLWGRNHTT------FESINTKRKNLKY 48
Query: 123 LPGIKLGKNVVADPDLENAVKD-ANMLVFVTPHQFMEGICKRLVGK-VNGDVEAISLIKG 180
LP L N+ ++ + D A ++ P Q + IC++L + + + KG
Sbjct: 49 LPTCHLPDNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKG 108
Query: 181 ME-VKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWV 238
+E + P S +++E L + +L G + A EIA EK + V N + +
Sbjct: 109 IEKSSLKFP---SEIVNEILPNNPIAILSGPSFAKEIA-EKLPCSIVLAGQNETLGSSLI 164
Query: 239 QLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298
S + QD+ GV++ LKN++AIA G V G +GNN AA++ G+ E++
Sbjct: 165 SKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTL 224
Query: 299 SKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKL 358
S+ +T + DLI TC +R ++ F G ++ + +G+ +
Sbjct: 225 YSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGNGF----NINQILSEGKSV 280
Query: 359 -QGVSTAREVY 368
+G ST + +
Sbjct: 281 IEGFSTVKPLI 291
|
Length = 326 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 419 | |||
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 100.0 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 100.0 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 100.0 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 100.0 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 100.0 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.96 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.96 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.96 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.95 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.95 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.94 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.93 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.92 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.92 | |
| PF07479 | 149 | NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate | 99.91 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.91 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.88 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.87 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.86 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.85 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.85 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.84 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.82 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.81 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.8 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.79 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.79 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.78 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.76 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.74 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.74 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.73 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.72 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.71 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.71 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.71 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.68 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.64 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.64 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.64 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.64 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.63 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.63 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.6 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.59 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.57 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.56 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.55 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.53 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.52 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.52 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.51 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.51 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.5 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.49 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.47 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.46 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 99.45 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.43 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.43 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.43 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.42 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.42 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.4 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.39 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.38 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.38 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.37 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.34 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.33 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.33 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.32 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.3 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.28 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.27 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.26 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.24 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.23 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.19 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.19 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.18 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.17 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.12 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.09 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.09 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.05 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.96 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.95 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.92 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 98.91 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.9 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.88 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.87 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 98.86 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 98.83 | |
| PF08546 | 125 | ApbA_C: Ketopantoate reductase PanE/ApbA C termina | 98.8 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.78 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 98.74 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.73 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.71 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.66 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.6 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.51 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 98.47 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.46 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.46 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.46 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.43 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.42 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.39 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.35 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.33 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.31 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 98.31 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.26 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.25 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.24 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.23 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.21 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.19 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.16 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.15 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.14 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.13 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.1 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.1 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.08 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.04 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.03 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.01 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.0 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.99 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.97 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.96 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.96 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.96 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.93 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.92 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.89 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.87 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.85 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.85 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 97.84 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.84 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.83 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.82 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.8 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.79 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.77 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.75 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.74 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.73 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.73 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.72 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.71 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.7 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.69 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.69 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.69 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.69 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.68 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.67 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.67 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.66 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.66 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.65 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.64 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.64 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.63 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.62 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.56 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 97.54 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 97.54 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.53 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.53 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.52 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.51 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.5 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.5 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.5 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.49 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.48 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.47 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.44 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.44 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.44 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.43 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.41 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.4 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.38 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.36 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.36 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.34 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.33 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.33 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.33 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.32 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.32 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.32 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.3 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.29 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.28 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.27 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.26 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.25 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.24 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.24 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.24 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.21 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.2 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.2 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.18 | |
| PLN00106 | 323 | malate dehydrogenase | 97.16 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.15 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.15 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.12 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.1 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.1 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.09 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 97.07 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.05 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.02 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 97.01 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.99 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.99 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.98 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.98 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.96 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.91 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.87 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.85 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.85 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.84 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.83 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.82 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.81 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.81 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 96.79 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.76 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.75 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.74 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 96.72 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.71 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.58 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 96.57 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.54 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.53 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.53 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.5 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.47 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.42 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.42 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.39 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.38 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.36 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.33 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.33 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.26 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.24 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.22 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.21 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 96.21 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.18 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 96.17 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.14 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.07 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.05 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.03 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.02 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.01 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.0 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 95.99 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.99 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.86 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.85 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.85 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.84 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.84 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.8 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.79 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 95.77 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.76 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.74 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.73 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 95.72 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.71 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 95.68 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.66 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.64 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 95.59 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.59 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.52 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.51 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.51 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.5 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.46 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.44 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.41 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.41 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.34 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 95.33 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.32 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 95.31 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.31 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 95.28 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.26 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 95.25 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 95.22 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.19 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 95.18 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 95.16 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.15 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.12 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 95.05 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.04 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.04 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 95.0 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.0 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.0 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 94.97 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.96 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 94.86 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.81 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 94.79 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 94.78 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.77 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 94.71 | |
| PRK05868 | 372 | hypothetical protein; Validated | 94.64 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 94.59 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.58 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 94.58 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 94.57 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 94.56 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 94.53 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 94.52 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.45 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 94.44 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 94.43 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 94.41 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.34 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.26 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 94.26 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 94.24 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 94.18 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 94.18 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.17 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.16 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 94.13 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.12 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 94.04 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.02 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.02 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 94.0 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.89 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 93.85 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 93.8 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 93.79 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 93.76 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 93.76 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 93.75 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 93.75 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.72 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.66 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 93.63 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 93.62 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 93.59 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.58 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 93.57 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.57 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 93.54 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 93.52 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 93.51 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 93.5 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.46 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.42 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.32 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 93.31 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.31 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 93.25 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 93.23 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 93.17 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 93.16 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 93.1 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.1 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 93.02 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 93.01 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 92.98 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 92.97 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.97 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.92 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 92.91 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 92.9 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.86 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.83 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 92.81 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 92.8 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 92.77 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.77 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 92.71 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 92.71 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 92.7 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.68 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 92.67 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.67 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 92.63 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 92.61 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 92.6 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 92.59 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.54 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 92.52 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 92.51 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.49 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 92.45 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 92.41 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 92.41 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 92.41 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 92.4 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 92.38 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 92.37 | |
| COG1832 | 140 | Predicted CoA-binding protein [General function pr | 92.32 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 92.3 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 92.27 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 92.18 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 92.18 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.15 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 92.13 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 92.1 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 92.08 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 92.07 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 92.07 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 92.06 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 92.04 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 92.01 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.98 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 91.93 | |
| PLN02985 | 514 | squalene monooxygenase | 91.92 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 91.91 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 91.9 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 91.86 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 91.82 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.82 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.81 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 91.8 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 91.75 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 91.75 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 91.75 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.64 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 91.6 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.58 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 91.56 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 91.53 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 91.52 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 91.48 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 91.46 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 91.46 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 91.45 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 91.37 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 91.37 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 91.34 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.31 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 91.3 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 91.29 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 91.28 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.26 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 91.26 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 91.24 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 91.23 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.22 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 91.22 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 91.21 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 91.12 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 91.1 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 91.05 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 91.03 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 91.01 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 90.97 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 90.92 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 90.75 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 90.71 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 90.69 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.68 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 90.6 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 90.53 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 90.46 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.39 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 90.29 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 90.24 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.24 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 90.22 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 90.2 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 90.2 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 90.2 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.19 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 90.15 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 90.11 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.1 |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=428.89 Aligned_cols=321 Identities=38% Similarity=0.573 Sum_probs=303.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+|||+|||+|+||+++|..|+++| |+|++|.|+++. ++.|+..+.|.+|+|++.+|.++++++|+++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng-------~~V~lw~r~~~~------~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~ 67 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG-------HEVRLWGRDEEI------VAEINETRENPKYLPGILLPPNLKATTDLAE 67 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC-------CeeEEEecCHHH------HHHHHhcCcCccccCCccCCcccccccCHHH
Confidence 589999999999999999999999 999999999876 8889998889999999999999999999999
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhcC
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVEK 219 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g~ 219 (419)
+++++|+|+++||++.++++++++.+.+.+++++|+++||+.++ +...+++++++.+|. ++.+++||++|.|+++|.
T Consensus 68 a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~--t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~ 145 (329)
T COG0240 68 ALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPE--TGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGL 145 (329)
T ss_pred HHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCC--CcchHHHHHHHHcCCCeEEEEECccHHHHHhcCC
Confidence 99999999999999999999999998999999999999999865 578899999998874 589999999999999999
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHH
Q 014757 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFS 299 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la 299 (419)
|+.+++++. |.+.+++++.+|++..|+++.++|+.|+|.++++||++|+++|+.+++.+|+|+.+++++++++||.+++
T Consensus 146 pta~~vas~-d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg 224 (329)
T COG0240 146 PTAVVVASN-DQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLG 224 (329)
T ss_pred CcEEEEecC-CHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHH
Confidence 999999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCC
Q 014757 300 KLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWL 377 (419)
Q Consensus 300 ~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~ 377 (419)
.++| .+|++|.+++|+||+++||++ |||+++|..+++ | .++++++..+ |+++||.++.+.++++++++|+
T Consensus 225 ~~lG--~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg~-g--~~~~e~l~~~--g~vvEGv~t~k~v~~la~~~~i- 296 (329)
T COG0240 225 VALG--AKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLGQ-G--LSLDEALEEI--GQVVEGVRTAKAVYELAKKLGI- 296 (329)
T ss_pred HHhC--CCcchhcccccccceeEecCCCccccHHHHHHHhC-C--CCHHHHHHhc--CCeeecHHHHHHHHHHHHHcCC-
Confidence 9995 789999999999999999998 999999999998 6 5677766654 9999999999999999999999
Q ss_pred cCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 378 ELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 378 ~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
++|+++.+|++++++++|++.++.|...
T Consensus 297 -~mPI~~~Vy~vl~~~~~~~~~~~~L~~r 324 (329)
T COG0240 297 -EMPITEAVYRVLYEGLDPKEAIEELMGR 324 (329)
T ss_pred -CCCHHHHHHHHHhCCCCHHHHHHHHhcc
Confidence 9999999999999999999999998653
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=434.75 Aligned_cols=345 Identities=52% Similarity=0.904 Sum_probs=313.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.|||+|||+|+||+++|..|+++|.....|+|+|.+|.|+++. +.+++++.|++.+.|.+|+|++++|+++++++|+++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~-~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV-EGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc-cchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 4799999999999999999999974333445799999999863 344568999999999999999999999999999988
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhc--cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhc
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVG--KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVE 218 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~--~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g 218 (419)
++.++|+||++||++.++++++++.+ .+.+++++|+++||+..++.....+++++++.++.++.+++||++|.|+..+
T Consensus 90 av~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A~Eva~~ 169 (365)
T PTZ00345 90 AVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVANDVARE 169 (365)
T ss_pred HHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHHHHHHcC
Confidence 89999999999999999999999998 7877889999999998764333678999999887778999999999999999
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Q 014757 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
.|+.+++++. +.+.++.++++|++.+|+++.++|+.|+|+++++||++|+++|+++++++|+|+.+++++++++||.++
T Consensus 170 ~pt~~vias~-~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l 248 (365)
T PTZ00345 170 EFSEATIGCE-DKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLF 248 (365)
T ss_pred CCcEEEEEeC-CHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 9999999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccC-CCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCC
Q 014757 299 SKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEG-KRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWL 377 (419)
Q Consensus 299 a~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~-~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~ 377 (419)
++++|.|.++++|++++|+||+++||++|||+++|..+++ |. +.+++++++.+.+|+++||..++..++++++++++.
T Consensus 249 ~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~-g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~ 327 (365)
T PTZ00345 249 GKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAK-RNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLK 327 (365)
T ss_pred HHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhc-cCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCC
Confidence 9999744699999999999999999999999999999998 42 247888887766799999999999999999999984
Q ss_pred cCCcHHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 014757 378 ELFPLFATVHEICVGHLPPSAIVEYSERKPR 408 (419)
Q Consensus 378 ~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (419)
.++|+++++|++++++.+|+++++.|.+++.
T Consensus 328 ~~~Pi~~~vy~il~~~~~~~~~~~~l~~r~~ 358 (365)
T PTZ00345 328 KEFPLFTVTYKIAFEGADPSSLIDVLSTNEL 358 (365)
T ss_pred CCCCHHHHHHHHHhCCCCHHHHHHHHHcCCC
Confidence 5799999999999999999999999987543
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-54 Score=421.24 Aligned_cols=335 Identities=57% Similarity=0.917 Sum_probs=304.3
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCC-CCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSS-FHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~-~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
||+|||+|+||+++|..|+++|...++ |.|+|++|.|++.. +.+++.+.+++.+.+.+|+|++++|+++++++|++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~-~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEI-EGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecccc-CCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 699999999999999999998732221 44799999996532 3455688999988899999999999999999999999
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCce
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFS 221 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~~ 221 (419)
+.++|+||++||++.++++++++.+++++++++|+++||+..++.+...+++++++.++.++.+++||++|.|+..|.|+
T Consensus 80 l~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~~pt 159 (342)
T TIGR03376 80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKEKFS 159 (342)
T ss_pred HhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcCCCc
Confidence 99999999999999999999999999988999999999998754467889999999887788999999999999999999
Q ss_pred eEEEeecCC----HHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHH
Q 014757 222 EATVGYRDN----REIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRA 297 (419)
Q Consensus 222 ~~~~~~~~~----~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~ 297 (419)
.+++++. + .+.++.++++|++.+|+++.++|+.|+|+++++||++|+++|+++++++|+|+.+++++++++||.+
T Consensus 160 ~~~ia~~-~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~ 238 (342)
T TIGR03376 160 ETTVGYR-DPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIK 238 (342)
T ss_pred eEEEEeC-CCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999988 7 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcc--chhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcC
Q 014757 298 FSKLLFSSVKDS--TFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRG 375 (419)
Q Consensus 298 la~a~g~g~~~~--~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~g 375 (419)
+++++| .+++ +|++++|+||+++||++|||+++|..++++| .+++++.+.++.|+++||..+++.+++++++++
T Consensus 239 l~~~~g--~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g--~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~ 314 (342)
T TIGR03376 239 FARMFF--PTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTG--KSLEELEKELLNGQSLQGVATAKEVHELLKNKN 314 (342)
T ss_pred HHHHhC--CCCCCCcccccchhhhhhheeecCccHHHHHHHHhcC--CCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcC
Confidence 999996 5666 9999999999999999999999999999844 688888877557999999999999999999999
Q ss_pred CCcCCcHHHHHHHHHhCCCCHHHHHHHH
Q 014757 376 WLELFPLFATVHEICVGHLPPSAIVEYS 403 (419)
Q Consensus 376 v~~~~P~~~~~~~~l~~~~~~~~~~~~~ 403 (419)
+..++|+++++|++++++++|+++++++
T Consensus 315 i~~~~Pi~~~vy~il~~~~~~~~~~~~~ 342 (342)
T TIGR03376 315 KDDEFPLFEAVYQILYEGLPPKKLPECL 342 (342)
T ss_pred CCcCCCHHHHHHHHHhCCCCHHHHHhhC
Confidence 9222999999999999999999998864
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-50 Score=397.01 Aligned_cols=333 Identities=30% Similarity=0.420 Sum_probs=301.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC-CCccCCCeEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP-GIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~-~~~l~~~i~~~~ 136 (419)
...+|||+|||+|+||+++|..|+++| +|.+|.|+++. ++.+++.+.+..+++ +..++.++.+++
T Consensus 4 ~~~~mkI~IiGaGa~G~alA~~La~~g--------~v~l~~~~~~~------~~~i~~~~~~~~~l~~~~~l~~~i~~t~ 69 (341)
T PRK12439 4 AKREPKVVVLGGGSWGTTVASICARRG--------PTLQWVRSAET------ADDINDNHRNSRYLGNDVVLSDTLRATT 69 (341)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC--------CEEEEeCCHHH------HHHHHhcCCCcccCCCCcccCCCeEEEC
Confidence 345689999999999999999999997 47889888776 788998887777887 667777888889
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC-CceEEEeCcchHHHH
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG-VSCCVLMGANIANEI 215 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g-~~~~v~~gp~~a~e~ 215 (419)
|+++++.++|+||++||+++++++++++.+.+++++++|+++||++.. +...+++.+++.++ .++.++.||+++.++
T Consensus 70 d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~--t~~~~se~i~~~l~~~~~~~l~GP~~a~ev 147 (341)
T PRK12439 70 DFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG--TNMRMSQIIEEVLPGHPAGILAGPNIAREV 147 (341)
T ss_pred CHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC--CCCcHHHHHHHHcCCCCeEEEECCCHHHHH
Confidence 988888999999999999999999999999999899999999999864 35778888888775 457889999999999
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHH
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREM 295 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~ 295 (419)
..|.++.+++++. +.+..+.++++|++.+++++.++|+.+++|++++||++|+++|+++++++++|+.++++.++++|+
T Consensus 148 ~~g~~t~~via~~-~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~ 226 (341)
T PRK12439 148 AEGYAAAAVLAMP-DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREM 226 (341)
T ss_pred HcCCCeEEEEEeC-CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 9999888888887 888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014757 296 RAFSKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 296 ~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
.++++++| .++++|++++|+||+++||++ |||+++|..+++ | .+++++.+.+ ++++||...++.+++++++
T Consensus 227 ~~~~~a~G--~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~-g--~~~~~~~~~~--~~~~EG~~~~~~~~~~~~~ 299 (341)
T PRK12439 227 TKLGVAMG--GNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGA-G--KPIDEIIASM--NQVAEGVKAASVVMEFADE 299 (341)
T ss_pred HHHHHHhC--CCcccccccchhhhhhhhccCCCCccHHHHHHHHC-C--CCHHHHHHhc--CCEEehHHHHHHHHHHHHH
Confidence 99999995 799999999999999999998 899999999998 7 6788887654 7899999999999999999
Q ss_pred cCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcCCccccccCCc
Q 014757 374 RGWLELFPLFATVHEICVGHLPPSAIVEYSERKPRLSLLEGST 416 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (419)
+++ ++|+++.+|++++++++|+++++.|-.++..+=.+|++
T Consensus 300 ~~~--~~Pi~~~~~~il~~~~~~~~~~~~l~~~~~~~e~~~~~ 340 (341)
T PRK12439 300 YGL--NMPIAREVDAVINHGSTVEQAYRGLIAEVPGHEVHGSG 340 (341)
T ss_pred hCC--CCCHHHHHHHHHhCCCCHHHHHHHHhcCCCCcccCCCC
Confidence 999 99999999999999999999999998866555566765
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=368.03 Aligned_cols=349 Identities=58% Similarity=0.956 Sum_probs=318.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCC-cchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPS-GEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~-~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
++...||+|||+|+||+++|+.+.++-..-+.|..+|.+|.++++.-. ++.+.|-||.++.|++|+|++++|.++.+.+
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 444579999999999999999999986556677789999999887521 3789999999999999999999999999999
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCC--cccHHHHHHhHhCCceEEEeCcchHHH
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREG--PCMISTLISEQLGVSCCVLMGANIANE 214 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~--~~~~~~~i~~~~g~~~~v~~gp~~a~e 214 (419)
|+.+++.+||+++..+|.+.+..++++|..+++++...||++||++..... .+.++++|.+.+|.++.+++||+.|.|
T Consensus 98 dl~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~E 177 (372)
T KOG2711|consen 98 DLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASE 177 (372)
T ss_pred hHHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHH
Confidence 999999999999999999999999999999999999999999999865333 478899999999999999999999999
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHH
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLRE 294 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E 294 (419)
+.++++...++++....+.-..+.++|++.+|+++..+|..++|+++++||++|+++|+.+++.+++|+.+++++.++.|
T Consensus 178 Va~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~E 257 (372)
T KOG2711|consen 178 VANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLE 257 (372)
T ss_pred HHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHH
Confidence 99999999999987222333359999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHc
Q 014757 295 MRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 374 (419)
Q Consensus 295 ~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~ 374 (419)
+..+++.+-++..+++++++||++|++.||+++||++.++.+++.| +++++.++.+.+|+..+|..+++.+++++++.
T Consensus 258 m~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktg--k~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~~ 335 (372)
T KOG2711|consen 258 MIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTG--KSLEELEKELLNGQKLQGPATAKEVYELLQKK 335 (372)
T ss_pred HHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcC--CCHHHHHHHhhCCCcccCcHHHHHHHHHHHHc
Confidence 9999999976558889999999999999999999999999999844 47888889999999999999999999999999
Q ss_pred CCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 014757 375 GWLELFPLFATVHEICVGHLPPSAIVEYSERKPR 408 (419)
Q Consensus 375 gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (419)
|+.+.+|+..++|++++++.+++++++.++..+.
T Consensus 336 ~l~~kfPlftaVykI~~~~~~~~~lle~l~~~~~ 369 (372)
T KOG2711|consen 336 GLVEKFPLFTAVYKICYERLPPQALLECLRNHPE 369 (372)
T ss_pred ChhhhCcHHHHHHHHHhcCCCHHHHHHHHhcccc
Confidence 9977999999999999999999999999998653
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=355.96 Aligned_cols=320 Identities=22% Similarity=0.386 Sum_probs=283.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|+||+++|..|+++| ++|++|+|+++. ++.+++.+.+..++++..++.+++++++++++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g-------~~V~l~~r~~~~------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 67 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK-------ISVNLWGRNHTT------FESINTKRKNLKYLPTCHLPDNISVKSAIDEV 67 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-------CeEEEEecCHHH------HHHHHHcCCCcccCCCCcCCCCeEEeCCHHHH
Confidence 68999999999999999999999 999999998766 78888876666667777777788888888776
Q ss_pred h-cCCCEEEEccCcchHHHHHHHHhc-cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhc
Q 014757 142 V-KDANMLVFVTPHQFMEGICKRLVG-KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVE 218 (419)
Q Consensus 142 ~-~~aDlVilavp~~~~~~vl~~l~~-~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g 218 (419)
+ .++|+||++||+++++++++++.+ .+++++.+++++||++... ...+.+.+.+.++. ++.++.||+++.++..+
T Consensus 68 ~~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~--~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~ 145 (326)
T PRK14620 68 LSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSS--LKFPSEIVNEILPNNPIAILSGPSFAKEIAEK 145 (326)
T ss_pred HhCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCC--CccHHHHHHHHcCCCceEeecCCcHHHHHHcC
Confidence 5 589999999999999999999998 8888888999999997642 34567777777753 56788999999988887
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Q 014757 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
.++.+.+++. +.+..++++++|++.+++++.++|+.+.+|.|+++|+++++.|+..+..++.|...+++.+++.|+.++
T Consensus 146 ~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v 224 (326)
T PRK14620 146 LPCSIVLAGQ-NETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTL 224 (326)
T ss_pred CCcEEEEecC-CHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 7777777776 777889999999999999999999999999999999999999999999888889899999999999999
Q ss_pred HHHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCC
Q 014757 299 SKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGW 376 (419)
Q Consensus 299 a~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv 376 (419)
++++|.+.+++++++++|++|++.||.+ +||+++|..+++ | ++++|+.+. +++++|+...++.++++++++|+
T Consensus 225 ~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~-g--~~~~d~~~~--~~~~vegi~~~~~v~~~a~~~~i 299 (326)
T PRK14620 225 YSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGN-G--FNINQILSE--GKSVIEGFSTVKPLISLAKKLNI 299 (326)
T ss_pred HHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHHHHHC-C--CCHHHHHHh--CCCEeecHHHHHHHHHHHHHhCC
Confidence 9999755689999999999999999984 899999999998 6 678888764 35678999999999999999999
Q ss_pred CcCCcHHHHHHHHHhCCCCHHHHHHHHh
Q 014757 377 LELFPLFATVHEICVGHLPPSAIVEYSE 404 (419)
Q Consensus 377 ~~~~P~~~~~~~~l~~~~~~~~~~~~~~ 404 (419)
++|+++++|++++++.+|+++++.|-
T Consensus 300 --~~P~~~~l~~~~~~~~~~~~~~~~~~ 325 (326)
T PRK14620 300 --ELPICESIYNLLYENISLEKTISVIL 325 (326)
T ss_pred --CCCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999998874
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=337.12 Aligned_cols=320 Identities=31% Similarity=0.464 Sum_probs=275.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
++|||+|||+|+||+++|..|+++| ++|++|+|++++ .+.+++.+.+..++++..++.++..+++++
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G-------~~V~~~~r~~~~------~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~ 69 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKG-------VPVRLWARRPEF------AAALAAERENREYLPGVALPAELYPTADPE 69 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC-------CeEEEEeCCHHH------HHHHHHhCcccccCCCCcCCCCeEEeCCHH
Confidence 4689999999999999999999999 999999998765 677776555555555666666677788888
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcC
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEK 219 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~ 219 (419)
+++.++|+||+|+|+.+++++++.+ +++.++++++||+.+.......+++.+.+.....+.++.||+++.++..+.
T Consensus 70 e~~~~aD~Vi~~v~~~~~~~v~~~l----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~ 145 (328)
T PRK14618 70 EALAGADFAVVAVPSKALRETLAGL----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFL 145 (328)
T ss_pred HHHcCCCEEEEECchHHHHHHHHhc----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCC
Confidence 8888999999999999988887554 467899999999986533345666666542223467889999999998887
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHH
Q 014757 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFS 299 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la 299 (419)
++..++++. +.+.+++++++|+..+++++.++|+.+++|+++++|+++++.|...++++++|...+++.++++|+..++
T Consensus 146 ~~~~~~~~~-~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la 224 (328)
T PRK14618 146 PAATVVASP-EPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFG 224 (328)
T ss_pred CeEEEEEeC-CHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 777778877 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCC
Q 014757 300 KLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWL 377 (419)
Q Consensus 300 ~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~ 377 (419)
+++ |++++++++.++.+|++.+|.+ +||+.+|.++.+ | .+++++.. .+.+.|+.+|.+.+++++++.|+
T Consensus 225 ~~~--G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~-g--~~~~~~~~---~~~~~~g~kd~~~~~~la~~~~~- 295 (328)
T PRK14618 225 VAL--GAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVR-G--VDREHLEA---GGKVVEGLYTVKALDAWAKAHGH- 295 (328)
T ss_pred HHh--CCCccchhcCcchhheeeEeccCCCccHHHHHHHhC-C--CCHHHHHH---cCCEEecHHHHHHHHHHHHHhCC-
Confidence 999 4899999999999999999876 899998988987 5 45554432 46889999999999999999999
Q ss_pred cCCcHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 014757 378 ELFPLFATVHEICVGHLPPSAIVEYSERKP 407 (419)
Q Consensus 378 ~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (419)
++|+.+.+|++++++.+|+++++.+.+++
T Consensus 296 -~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (328)
T PRK14618 296 -DLPIVEAVARVARGGWDPLAGLRSLMGRE 324 (328)
T ss_pred -CCCHHHHHHHHHhCCCCHHHHHHHHhcCC
Confidence 99999999999999999999999997643
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=324.87 Aligned_cols=320 Identities=34% Similarity=0.541 Sum_probs=279.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|+||+++|..|+++| ++|++|+|++++ ++.+++.+.+..+.++..++.++..++++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g-------~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNG-------HDVTLWARDPEQ------AAEINADRENPRYLPGIKLPDNLRATTDLAE 67 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEECCHHH------HHHHHHcCcccccCCCCcCCCCeEEeCCHHH
Confidence 689999999999999999999999 899999998766 6777776655555555555556777788877
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceEEEeCcchHHHHHhc
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCCVLMGANIANEIAVE 218 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~v~~gp~~a~e~~~g 218 (419)
++.++|+||+|||+.+++++++++.+.+++++++|+++||++++ +...+++.+++.++. ...++.+|+.+.+...+
T Consensus 68 ~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~--~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g 145 (325)
T PRK00094 68 ALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPG--TGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARG 145 (325)
T ss_pred HHhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCC--CCCcHHHHHHHHcCCCCceEEEECccHHHHHHcC
Confidence 78899999999999999999999999888899999999999874 346677888776653 56788999999888778
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Q 014757 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
.+..+.+++. +.+.+++++++|+..++++..++|+.+.+|+++++|+++++.|...++++++|...+++..+++|+..+
T Consensus 146 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~l 224 (325)
T PRK00094 146 LPTAVVIAST-DEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL 224 (325)
T ss_pred CCcEEEEEeC-CHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 7776777776 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCC
Q 014757 299 SKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGW 376 (419)
Q Consensus 299 a~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv 376 (419)
++++| ++++++.+.++.+|++.++.+ +||+.+|..+.. + .+++++.+.+ |++.|+.+|++.++++++++|+
T Consensus 225 a~~~G--~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~-~--~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~~~ 297 (325)
T PRK00094 225 GVALG--ANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQ-G--KSLEEALAEI--GMVAEGVRTAKAVYELAKKLGV 297 (325)
T ss_pred HHHhC--CChhhhhcccHhhhhhhhccCCCCccHHHHHHHHC-C--CCHHHHHHHc--CCEeecHHHHHHHHHHHHHhCC
Confidence 99995 899999998888998888877 899999999887 5 4555554432 5899999999999999999999
Q ss_pred CcCCcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014757 377 LELFPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 377 ~~~~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
++|+++++|++++++++|+++++.|.+
T Consensus 298 --~~P~~~~~~~~~~~~~~~~~~~~~~~~ 324 (325)
T PRK00094 298 --EMPITEAVYAVLYEGKDPREAVEDLMG 324 (325)
T ss_pred --CCCHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 999999999999999999999998864
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=316.10 Aligned_cols=295 Identities=28% Similarity=0.435 Sum_probs=263.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..|||+|||+|+||+++|..|+++| |+|++|+|++. ++++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G-------~~V~~~~r~~~---------------------------------~~~~ 42 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANG-------HRVRVWSRRSG---------------------------------LSLA 42 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCC-------CEEEEEeCCCC---------------------------------CCHH
Confidence 4589999999999999999999999 99999998742 2344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhcc-CCCCcEEEEeecCcccCCCCcccHHHHHHhHhC-CceEEEeCcchHHHHHh
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGK-VNGDVEAISLIKGMEVKREGPCMISTLISEQLG-VSCCVLMGANIANEIAV 217 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~-l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g-~~~~v~~gp~~a~e~~~ 217 (419)
++++++|+||+|+|+..++++++++.++ +++++++++++||++++ +...+++.+...++ .++.+++||..+.++..
T Consensus 43 ~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~--~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~ 120 (308)
T PRK14619 43 AVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTATKGLDPE--TTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQ 120 (308)
T ss_pred HHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCC--CCcCHHHHHHHHcCCCceEEEECCCcHHHHhc
Confidence 5677899999999999999999998774 67889999999999864 35667777776664 45677899999999888
Q ss_pred cCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHH
Q 014757 218 EKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRA 297 (419)
Q Consensus 218 g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~ 297 (419)
+.++.++++++ +.+..++++++|+..+++++.++|+.+++|++++||+++++.|+..++++++|...+++.++++|+.+
T Consensus 121 ~~~~~~~~ag~-~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~ 199 (308)
T PRK14619 121 GLPAATVVASR-DLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIR 199 (308)
T ss_pred CCCeEEEEEeC-CHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 87777888888 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcC
Q 014757 298 FSKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRG 375 (419)
Q Consensus 298 la~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~g 375 (419)
+++++| ++++++++++|++|+..+|.+ +||+.+|..++. + .+++++++.+ +.++||.++++.+++++++.|
T Consensus 200 l~~~~G--~~~~t~~~~~g~gd~~~t~~~~~~rn~~~g~~l~~-g--~~~~~~~~~~--~~~~eG~~~~~~~~~~~~~~~ 272 (308)
T PRK14619 200 VGTHLG--AQTETFYGLSGLGDLLATCTSPLSRNYQVGYGLAQ-G--KSLEQILAEL--EGTAEGVNTANVLVQLAQQQN 272 (308)
T ss_pred HHHHhC--CCccccccccchhhhheeecCCCCccHHHHHHHHC-C--CCHHHHHHhc--CCEeecHHHHHHHHHHHHHcC
Confidence 999995 899999999999999999987 899999999987 6 5677777653 568999999999999999999
Q ss_pred CCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 376 WLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 376 v~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
+ ++|+.+.+|++++++.+|+++++.+.++
T Consensus 273 ~--~~Pl~~~v~~i~~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 273 I--AVPITEQVYRLLQGEITPQQALEELMER 301 (308)
T ss_pred C--CCCHHHHHHHHHcCCCCHHHHHHHHHcC
Confidence 9 9999999999999999999999999874
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=238.07 Aligned_cols=284 Identities=13% Similarity=0.151 Sum_probs=202.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCcc-CCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY-LPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~-~~~~~l~~~i~~~~~ 137 (419)
+.+|||+|||+|+||+.+|..|+++| ++|+++.|++ .+.+++.|..... .++.... .+.++++
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g-------~~V~~~~r~~--------~~~~~~~g~~~~~~~~~~~~~-~~~~~~~ 66 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAG-------FDVHFLLRSD--------YEAVRENGLQVDSVHGDFHLP-PVQAYRS 66 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCC-------CeEEEEEeCC--------HHHHHhCCeEEEeCCCCeeec-CceEEcc
Confidence 45589999999999999999999999 9999999975 2566666644321 1122221 1344455
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc----e-----EEEeC
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS----C-----CVLMG 208 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~----~-----~v~~g 208 (419)
+++ ...+|+||+|||+.++.++++.+.+.++++++|++++||++.. +.+.+.+|.. . +...+
T Consensus 67 ~~~-~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~--------e~l~~~~~~~~v~~g~~~~~a~~~~ 137 (313)
T PRK06249 67 AED-MPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE--------EQLREILPAEHLLGGLCFICSNRVG 137 (313)
T ss_pred hhh-cCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH--------HHHHHHCCCCcEEEEeeeEeEecCC
Confidence 543 6789999999999999999999999999999999999999863 4555555421 1 22345
Q ss_pred cchHHHHHhcCceeEEEeec--CC-----HHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC-
Q 014757 209 ANIANEIAVEKFSEATVGYR--DN-----REIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG- 280 (419)
Q Consensus 209 p~~a~e~~~g~~~~~~~~~~--~~-----~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~- 280 (419)
|+...+...|. +.++.. .+ .+..+.+.++|+..|+.+.+++|+....|.|++.|+..++.+...+...+
T Consensus 138 pg~v~~~~~g~---~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~ 214 (313)
T PRK06249 138 PGVIHHLAYGR---VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDP 214 (313)
T ss_pred CeEEEECCCCc---EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHH
Confidence 55444332332 344432 12 46778899999999999999999999999999999765555544444433
Q ss_pred ---ccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCe
Q 014757 281 ---NNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQK 357 (419)
Q Consensus 281 ---~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~ 357 (419)
+.....++...+.|+.+++++.|..++. .+.+ . .....+..+. ...+.+||++ +|+.
T Consensus 215 l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~-~~~~-----~---------~~~~~~~~~~-~~sSM~qD~~----~gr~ 274 (313)
T PRK06249 215 LMADPDSRALIRALMAEVIQGAAACGHTLPE-GYAD-----H---------MLAVTERMPD-YRPSMYHDFE----EGRP 274 (313)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHhcCCCCCh-hHHH-----H---------HHHHhhcCCC-CCChHHHHHH----CCCc
Confidence 2335679999999999999999743222 1111 0 0111112222 2113467764 5899
Q ss_pred eehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 358 LQGVSTAREVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 358 ~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
+|.+..+|.++++|+++|+ ++|+++++|++++.
T Consensus 275 tEid~i~G~vv~~a~~~Gi--~~P~~~~l~~~l~~ 307 (313)
T PRK06249 275 LELEAIYANPLAAARAAGC--AMPRVEMLYQALEF 307 (313)
T ss_pred ccHHHHhhHHHHHHHHhCC--CCcHHHHHHHHHHH
Confidence 9999999999999999999 99999999999875
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=233.00 Aligned_cols=283 Identities=16% Similarity=0.173 Sum_probs=203.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|+||+.+|..|+++| ++|++++|+++. .+.+++.|.+.. .+ .....+..+++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-------~~V~~~~r~~~~------~~~~~~~g~~~~--~~-~~~~~~~~~~~~~~~ 64 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-------HDVTLVARRGAH------LDALNENGLRLE--DG-EITVPVLAADDPAEL 64 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-------CeEEEEECChHH------HHHHHHcCCccc--CC-ceeecccCCCChhHc
Confidence 68999999999999999999999 999999997665 677777665431 11 111112344566554
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-c--------eEEEeCcchH
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-S--------CCVLMGANIA 212 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~--------~~v~~gp~~a 212 (419)
.++|+||+|||+++++++++.+.+.++++++||+++||++.. +.+.+.++. . .....+|+.+
T Consensus 65 -~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~--------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v 135 (304)
T PRK06522 65 -GPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHL--------EELAAYIGPERVLGGVVTHAAELEGPGVV 135 (304)
T ss_pred -CCCCEEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcH--------HHHHHhcCcccEEEEEEEEeeEecCCCEE
Confidence 889999999999999999999999998889999999999753 344444432 1 1235567766
Q ss_pred HHHHhcCceeEEEeecC-CHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC----ccHHHHH
Q 014757 213 NEIAVEKFSEATVGYRD-NREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG----NNTKAAI 287 (419)
Q Consensus 213 ~e~~~g~~~~~~~~~~~-~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~----~n~~~~l 287 (419)
.+.+.| .+.++... ..+..+.+.++|+..++.+.+++|+....|.|+++|+.....+...+...+ ++....+
T Consensus 136 ~~~~~g---~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l 212 (304)
T PRK06522 136 RHTGGG---RLKIGEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRAL 212 (304)
T ss_pred EEcCCC---CEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHH
Confidence 654443 24555431 224578899999999999999999999999999999866655555444433 3456789
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHH
Q 014757 288 MRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREV 367 (419)
Q Consensus 288 ~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v 367 (419)
+..++.|+.+++++.|...+.+.+.+. + ....+..+. ...+.++|++ +|+.+|.+..++.+
T Consensus 213 ~~~~~~E~~~v~~a~G~~~~~~~~~~~------~--------~~~~~~~~~-~~sSm~~D~~----~gr~tEid~i~G~~ 273 (304)
T PRK06522 213 IRALMEEVAAVAEAEGVHLSVEEVREY------V--------RQVIQKTAA-NTSSMLQDLE----AGRPTEIDAIVGYV 273 (304)
T ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHH------H--------HHHhhccCC-CCchHHHHHH----cCCCcccchhccHH
Confidence 999999999999999632222221110 0 011111112 2112356654 58999999999999
Q ss_pred HHHHHHcCCCcCCcHHHHHHHHHhCC
Q 014757 368 YEVLSHRGWLELFPLFATVHEICVGH 393 (419)
Q Consensus 368 ~~~a~~~gv~~~~P~~~~~~~~l~~~ 393 (419)
+++|+++|+ ++|.++++|++++..
T Consensus 274 v~~a~~~gv--~~P~~~~l~~~~~~~ 297 (304)
T PRK06522 274 LRRGRKHGI--PTPLNDALYGLLKAK 297 (304)
T ss_pred HHHHHHcCC--CCcHHHHHHHHHHHH
Confidence 999999999 999999999998653
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=232.03 Aligned_cols=282 Identities=17% Similarity=0.181 Sum_probs=208.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|+|+|+||+.+|..|+++| ++|+++.|+++ ++++++.|+.+....+ ........+.+. +.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-------~~V~~~~R~~~-------~~~l~~~GL~i~~~~~-~~~~~~~~~~~~-~~ 64 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-------HDVTLLVRSRR-------LEALKKKGLRIEDEGG-NFTTPVVAATDA-EA 64 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-------CeEEEEecHHH-------HHHHHhCCeEEecCCC-ccccccccccCh-hh
Confidence 79999999999999999999999 89999999875 4889988876554444 111111223333 34
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---------eEEEeCcchH
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---------CCVLMGANIA 212 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---------~~v~~gp~~a 212 (419)
...+|+||++||+++++++++.+.+.+++++.|+.+|||+++. +.+++.++.. .++..+|+++
T Consensus 65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~--------e~l~~~~~~~~il~G~~~~~a~~~~~g~v 136 (307)
T COG1893 65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHE--------EELRKILPKETVLGGVTTHGAVREGPGHV 136 (307)
T ss_pred cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHH--------HHHHHhCCcceEEEEEeeeeeEecCCceE
Confidence 6689999999999999999999999999999999999999874 4455544321 2445566665
Q ss_pred HHHHhcCceeEEEeec--CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC----ccHHHH
Q 014757 213 NEIAVEKFSEATVGYR--DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG----NNTKAA 286 (419)
Q Consensus 213 ~e~~~g~~~~~~~~~~--~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~----~n~~~~ 286 (419)
.+.+.|. +.++.. ...+..+.+.+.|+..++.+.+++|+....|.|++.|......+....++.+ +.....
T Consensus 137 ~~~g~g~---~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~ 213 (307)
T COG1893 137 VHTGLGD---TVIGELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARA 213 (307)
T ss_pred EEecCCc---EEEccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHH
Confidence 5544333 334332 1347889999999999999999999999999999999866555555455443 234567
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHh-hhccCCCCHHHHHHHHhcCCeeehHHHHH
Q 014757 287 IMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAF-AKNEGKRSFDDLEAEMLQGQKLQGVSTAR 365 (419)
Q Consensus 287 l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l-~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~ 365 (419)
++.+.+.|...++++.|..++.+.+. +-....... +. ..++..||+. +|+.+|.++.++
T Consensus 214 l~~~~~~E~~~v~~~~g~~~~~~~~~---------------~v~~~~~~~~~~-~~sSM~qDl~----~gr~tEid~i~G 273 (307)
T COG1893 214 LIRALVAEVVAVARAEGVELPEEVVE---------------RVLAVIRATDAE-NYSSMLQDLE----KGRPTEIDAING 273 (307)
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHH---------------HHHHHHHhcccc-cCchHHHHHH----cCCcccHHHHhh
Confidence 99999999999999996323332111 111222233 22 2112356764 589999999999
Q ss_pred HHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 366 EVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 366 ~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
+++++|+++|+ ++|+++++|++++.
T Consensus 274 ~vv~~a~~~gi--~~P~~~~L~~lvk~ 298 (307)
T COG1893 274 AVVRLAKKHGL--ATPVNDTLYALLKA 298 (307)
T ss_pred HHHHHHHHhCC--CCcHHHHHHHHHHH
Confidence 99999999999 99999999999975
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=231.87 Aligned_cols=282 Identities=12% Similarity=0.081 Sum_probs=196.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCC-ccCCCeEecCCH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGI-KLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~-~l~~~i~~~~~~ 138 (419)
.|||+|+|+|+||+.+|..|+++| ++|++++|++++ .+++++. |.......+. ..+ +.. .+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G-------~~V~lv~r~~~~------~~~i~~~~Gl~i~~~g~~~~~~--~~~-~~~ 65 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG-------LPVRLILRDRQR------LAAYQQAGGLTLVEQGQASLYA--IPA-ETA 65 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-------CCeEEEEechHH------HHHHhhcCCeEEeeCCcceeec--cCC-CCc
Confidence 479999999999999999999999 899999998655 6788754 4433211111 111 111 112
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-e--------EEEeCc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-C--------CVLMGA 209 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~--------~v~~gp 209 (419)
++ ...+|+||+|||++++.++++.+.+.+.+++.|+++|||++.+ +.+.+.++.. + +...+|
T Consensus 66 ~~-~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~--------e~l~~~~~~~~v~~g~~~~ga~~~~p 136 (305)
T PRK05708 66 DA-AEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQ--------DAVAARVPHARCIFASSTEGAFRDGD 136 (305)
T ss_pred cc-ccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCH--------HHHHHhCCCCcEEEEEeeeceecCCC
Confidence 22 4578999999999999999999999999999999999999874 4455555532 1 122345
Q ss_pred chHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccH-HHHHH
Q 014757 210 NIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNT-KAAIM 288 (419)
Q Consensus 210 ~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~-~~~l~ 288 (419)
+...+.+.+ .+.++.. ..+..+++.++|...|+++.+++|+....|.|++.|...+..+.......+.-. ....+
T Consensus 137 g~v~~~~~g---~~~~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~ 212 (305)
T PRK05708 137 WRVVFAGHG---FTWLGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEV 212 (305)
T ss_pred CEEEEeceE---EEEEcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHH
Confidence 444332222 2345544 445678899999999999999999999999999999865555544444433210 01567
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHH
Q 014757 289 RIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVY 368 (419)
Q Consensus 289 ~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~ 368 (419)
...+.|+.+++++.|...+++.+.+ .........+. ...+++||++ +|+++|.+..+|.++
T Consensus 213 ~~l~~E~~~va~a~G~~~~~~~~~~--------------~~~~~~~~~~~-~~sSM~qD~~----~gR~tEid~i~G~vv 273 (305)
T PRK05708 213 AALCAELSELLRRCGQPAAAANLHE--------------EVQRVIQATAA-NYSSMYQDVR----AGRRTEISYLLGYAC 273 (305)
T ss_pred HHHHHHHHHHHHHcCCCccHHHHHH--------------HHHHHHHhccC-CCcHHHHHHH----cCCceeehhhhhHHH
Confidence 8999999999999963222221211 00111122222 2112366765 589999999999999
Q ss_pred HHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 369 EVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 369 ~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
++|+++|+ ++|.++++|++++.
T Consensus 274 r~a~~~Gv--~~P~~~~l~~~v~~ 295 (305)
T PRK05708 274 RAADRHGL--PLPRLQHLQQRLVA 295 (305)
T ss_pred HHHHHcCC--CCchHHHHHHHHHH
Confidence 99999999 99999999999864
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=226.40 Aligned_cols=283 Identities=16% Similarity=0.127 Sum_probs=198.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC-CCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP-GIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~-~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|+||+.+|..|+++| ++|++|+| +++ .+.+++.|....... +..++ ...+++.++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-------~~V~~~~r-~~~------~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~ 64 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-------RDVTFLVR-PKR------AKALRERGLVIRSDHGDAVVP--GPVITDPEE 64 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-------CceEEEec-HHH------HHHHHhCCeEEEeCCCeEEec--ceeecCHHH
Confidence 78999999999999999999999 99999999 555 577777665433211 11122 223456666
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-c----e----EEEeCcch
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-S----C----CVLMGANI 211 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~----~----~v~~gp~~ 211 (419)
+..++|+||+|||+.+++++++.+.+.+.++++|++++||++.. +.+.+.++. + + ....+|+.
T Consensus 65 ~~~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~--------~~l~~~~~~~~v~~g~~~~~~~~~~~g~ 136 (305)
T PRK12921 65 LTGPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQL--------EQLEPYFGRERVLGGVVFISAQLNGDGV 136 (305)
T ss_pred ccCCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChH--------HHHHHhCCcccEEEEEEEEEEEECCCeE
Confidence 55789999999999999999999999888899999999999753 344444442 1 1 12234443
Q ss_pred HHHHHhcCceeEEEeec--CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC----ccHHH
Q 014757 212 ANEIAVEKFSEATVGYR--DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG----NNTKA 285 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~--~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~----~n~~~ 285 (419)
..+.. ...+.++.. ...+..+++.++|...++.+.+++|+....|.|++.|...++.+.......+ ++...
T Consensus 137 v~~~~---~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~ 213 (305)
T PRK12921 137 VVQRA---DHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGR 213 (305)
T ss_pred EEEcC---CCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHH
Confidence 33221 123455432 1246778899999999999999999999999999999765555554444432 34456
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHH
Q 014757 286 AIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAR 365 (419)
Q Consensus 286 ~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~ 365 (419)
.++..++.|+.+++++.|...+++.+... + ..+....+. ...++++|++ +|+.+|.+..++
T Consensus 214 ~l~~~~~~E~~~v~~a~G~~~~~~~~~~~------~--------~~~~~~~~~-~~sSm~~D~~----~gr~tEid~i~G 274 (305)
T PRK12921 214 DLARALLRECLAVARAEGAPLRDDVVEEI------V--------KIFAGAPGD-MKTSMLRDME----KGRPLEIDHLQG 274 (305)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhHHHHH------H--------HHHhccCCC-CCcHHHHHHH----cCCcccHHHHHH
Confidence 89999999999999999632222222110 0 001111111 1112355654 589999999999
Q ss_pred HHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 366 EVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 366 ~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
.++++|+++|+ ++|.++++|++++.
T Consensus 275 ~vv~~a~~~gv--~~P~~~~l~~~~~~ 299 (305)
T PRK12921 275 VLLRRARAHGI--PTPILDTVYALLKA 299 (305)
T ss_pred HHHHHHHHhCC--CCcHHHHHHHHHHH
Confidence 99999999999 99999999999865
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=222.07 Aligned_cols=291 Identities=14% Similarity=0.155 Sum_probs=199.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc---cCCCeEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK---LGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~---l~~~i~~~~~ 137 (419)
||||+|||+|.||+++|..|+++| ++|++|+|++. .+.+++.|......++.. .+.++..+++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G-------~~V~~~~r~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 67 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAG-------ADVTLIGRARI-------GDELRAHGLTLTDYRGRDVRVPPSAIAFSTD 67 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcC-------CcEEEEecHHH-------HHHHHhcCceeecCCCcceecccceeEeccC
Confidence 579999999999999999999999 99999998643 366676665433222211 1234555666
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-c-------e-EEEeC
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-S-------C-CVLMG 208 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~-------~-~v~~g 208 (419)
++ ++.++|+||+|||+.++.++++.+.+.++++++|++++||+... +.+.+.++. . . .+..+
T Consensus 68 ~~-~~~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~--------~~l~~~~~~~~~~~g~~~~~~~~~~ 138 (341)
T PRK08229 68 PA-ALATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA--------DVLRAALPGATVLAGMVPFNVISRG 138 (341)
T ss_pred hh-hccCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH--------HHHHHhCCCCcEEEEEEEEEEEecC
Confidence 64 57899999999999999999999999998999999999998752 334444331 1 1 24557
Q ss_pred cchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCC----CccHH
Q 014757 209 ANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEM----GNNTK 284 (419)
Q Consensus 209 p~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~----~~n~~ 284 (419)
|+.+.+...|. +.++. .+.+++++++|+..++++++++|+.+..|.|+++|++ ++.....+..+ .+...
T Consensus 139 pg~~~~~~~g~---l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~ 211 (341)
T PRK08229 139 PGAFHQGTSGA---LAIEA---SPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSY 211 (341)
T ss_pred CceEEecCCCc---eEecC---CchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchH
Confidence 76654333332 33332 2456899999999999999999999999999999973 22222223322 23445
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccchhccc--CCcceeecccCccc-HHHHHHhhhcc---CCCCHHHHHHHHhcCCee
Q 014757 285 AAIMRIGLREMRAFSKLLFSSVKDSTFFESC--GVADLITTCLGGRN-RKVAEAFAKNE---GKRSFDDLEAEMLQGQKL 358 (419)
Q Consensus 285 ~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~--~~~d~~~t~~~~rn-~~~g~~l~~~g---~~~~~~~~~~~~~~g~~~ 358 (419)
..++..++.|+..++++.| ++++.+.... +...++. ..+.- ......+.... ..+..+|+ .+|+.+
T Consensus 212 ~~~~~~~~~E~~~va~a~G--i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sm~~D~----~~~r~t 283 (341)
T PRK08229 212 RRCLALAQREALRVLKAAG--IRPARLTPLPPAWIPRLLR--LPDPLFRRLAGRMLAIDPLARSSMSDDL----AAGRAT 283 (341)
T ss_pred HHHHHHHHHHHHHHHHHcC--CCccccCCCChhhhhhhhc--CChHHHHHHHHHhhccCCccCchHHHHH----HcCCcc
Confidence 6789999999999999995 7766543211 1100000 00110 01112222101 00123454 468999
Q ss_pred ehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHh
Q 014757 359 QGVSTAREVYEVLSHRGWLELFPLFATVHEICV 391 (419)
Q Consensus 359 Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~ 391 (419)
|.+..++.++++|+++|+ ++|+++++|++++
T Consensus 284 Ei~~i~G~i~~~a~~~gv--~~P~~~~~~~~~~ 314 (341)
T PRK08229 284 EIDWINGEIVRLAGRLGA--PAPVNARLCALVH 314 (341)
T ss_pred hHHHHhhHHHHHHHHcCC--CCcHHHHHHHHHH
Confidence 999999999999999999 9999999999995
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=211.24 Aligned_cols=271 Identities=14% Similarity=0.108 Sum_probs=200.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+||+|||+|.||.+||.+|.++| |+|++|+|++++ ..+.+...| .....++.|+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-------~~v~v~~r~~~k-----a~~~~~~~G--------------a~~a~s~~ea 54 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-------HEVTVYNRTPEK-----AAELLAAAG--------------ATVAASPAEA 54 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-------CEEEEEeCChhh-----hhHHHHHcC--------------CcccCCHHHH
Confidence 68999999999999999999999 999999999876 123344434 3456778888
Q ss_pred hcCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHHH
Q 014757 142 VKDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIANE 214 (419)
Q Consensus 142 ~~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~e 214 (419)
+..+|+||+||++ .++++|+ +.+.+.+++++++|++++ ++++ ..+.+++.+++. |. +.+|..|+.-+.
T Consensus 55 a~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp~--~a~~~a~~~~~~-G~~~lDAPVsGg~~~A~- 129 (286)
T COG2084 55 AAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISPE--TARELAAALAAK-GLEFLDAPVSGGVPGAA- 129 (286)
T ss_pred HHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCC-CCHH--HHHHHHHHHHhc-CCcEEecCccCCchhhh-
Confidence 9999999999997 7899998 468888899999999986 6543 234555555543 43 345666665554
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHH
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLRE 294 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E 294 (419)
.|. .+++.++ +++.+++++++|+..+-++++..+. |.....|+.+|........++.|
T Consensus 130 --~Gt--LtimvGG-~~~~f~r~~pvl~~~g~~i~~~G~~-----------------G~G~~~Kl~nn~l~~~~~~a~aE 187 (286)
T COG2084 130 --AGT--LTIMVGG-DAEAFERAKPVLEAMGKNIVHVGPV-----------------GAGQAAKLANNILLAGNIAALAE 187 (286)
T ss_pred --hCc--eEEEeCC-CHHHHHHHHHHHHHhcCceEEECCC-----------------CchHHHHHHHHHHHHHHHHHHHH
Confidence 354 4577777 8999999999999999888887775 23334455566777788999999
Q ss_pred HHHHHHHhcCCCCccchhcccCCcceeecccCcccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014757 295 MRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 295 ~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
...++++. |++++.+.+...-+ .-.+..+ .++.++.+ ++ +++.+. .....||.+++.+.|++
T Consensus 188 Al~la~k~--Gld~~~~~~vi~~~-----~~~s~~~e~~~~~m~~-~~-~~p~F~--------v~~~~KDl~la~~~A~~ 250 (286)
T COG2084 188 ALALAEKA--GLDPDVVLEVISGG-----AAGSWILENYGPRMLE-GD-FSPGFA--------VDLMLKDLGLALDAAKE 250 (286)
T ss_pred HHHHHHHc--CCCHHHHHHHHhcc-----ccCChHHHhhcchhhc-CC-CCcchh--------HHHHHHHHHHHHHHHHh
Confidence 99999999 58999888742211 0011111 12344554 32 444332 33448999999999999
Q ss_pred cCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHh
Q 014757 374 RGWLELFPLFATVHEIC-------VGHLPPSAIVEYSE 404 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~ 404 (419)
.|+ ++|+.+.+.+++ +++.|.+.+++.++
T Consensus 251 ~g~--~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 251 LGA--PLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred cCC--CCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 999 999999988888 46888888888764
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=193.24 Aligned_cols=155 Identities=36% Similarity=0.580 Sum_probs=133.6
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
||+|||+|+||+++|..|+++| ++|++|.|+++. ++.|++.+.+..++++..++.++.+++|+++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-------~~V~l~~~~~~~------~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~ 67 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-------HEVTLWGRDEEQ------IEEINETRQNPKYLPGIKLPENIKATTDLEEAL 67 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-------EEEEEETSCHHH------HHHHHHHTSETTTSTTSBEETTEEEESSHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-------CEEEEEeccHHH------HHHHHHhCCCCCCCCCcccCcccccccCHHHHh
Confidence 7999999999999999999999 999999998765 789999888888999999999999999999999
Q ss_pred cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHhcCce
Q 014757 143 KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEKFS 221 (419)
Q Consensus 143 ~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~g~~~ 221 (419)
+++|+||++||++.++++++++.+++++++++++++||+... +...+++++++.++.+ +.+++||+++.|+..+.++
T Consensus 68 ~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~--~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt 145 (157)
T PF01210_consen 68 EDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPG--TLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPT 145 (157)
T ss_dssp TT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETT--EEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--E
T ss_pred CcccEEEecccHHHHHHHHHHHhhccCCCCEEEEecCCcccC--CCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCe
Confidence 999999999999999999999999999999999999999543 4678899999988754 8999999999999999999
Q ss_pred eEEEeecCCHHH
Q 014757 222 EATVGYRDNREI 233 (419)
Q Consensus 222 ~~~~~~~~~~~~ 233 (419)
.+++++. +.+.
T Consensus 146 ~~~~as~-~~~~ 156 (157)
T PF01210_consen 146 AVVIASK-NEEV 156 (157)
T ss_dssp EEEEEES-SHHH
T ss_pred EEEEEec-cccc
Confidence 9999987 6543
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-24 Score=205.15 Aligned_cols=275 Identities=15% Similarity=0.152 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCC-CccCCCeEecCCHHHHhcCCCEEE
Q 014757 71 NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPG-IKLGKNVVADPDLENAVKDANMLV 149 (419)
Q Consensus 71 ~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~-~~l~~~i~~~~~~~ea~~~aDlVi 149 (419)
+||+.+|..|+++| ++|++++|+ +. .+.+++.|.......+ ...+ .+.+++++++ ..++|+||
T Consensus 1 aiG~~~a~~L~~~G-------~~V~l~~r~-~~------~~~i~~~Gl~i~~~~~~~~~~-~~~~~~~~~~-~~~~D~ii 64 (293)
T TIGR00745 1 AVGSLYGAYLARAG-------HDVTLLARG-EQ------LEALNQEGLRIVSLGGEFQFR-PVSAATSPEE-LPPADLVI 64 (293)
T ss_pred CchHHHHHHHHhCC-------CcEEEEecH-HH------HHHHHHCCcEEEecCCcEEEc-ccccccChhh-cCCCCEEE
Confidence 58999999999999 999999997 33 5788887765443222 2221 2345566665 67899999
Q ss_pred EccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-c--------eEEEeCcchHHHHHhcCc
Q 014757 150 FVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-S--------CCVLMGANIANEIAVEKF 220 (419)
Q Consensus 150 lavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~--------~~v~~gp~~a~e~~~g~~ 220 (419)
+|||+.+++++++.+.+.+.++++|++++||++.. +.+.+.++. + .....+|++..+.+.+
T Consensus 65 v~vKs~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~--------~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~-- 134 (293)
T TIGR00745 65 ITVKAYQTEEAAALLLPLIGKNTKVLFLQNGLGHE--------ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLG-- 134 (293)
T ss_pred EeccchhHHHHHHHhHhhcCCCCEEEEccCCCCCH--------HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccc--
Confidence 99999999999999999999999999999999863 444444442 1 1234566655443333
Q ss_pred eeEEEeecC-CHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC---cc-HHHHHHHHHHHHH
Q 014757 221 SEATVGYRD-NREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG---NN-TKAAIMRIGLREM 295 (419)
Q Consensus 221 ~~~~~~~~~-~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~---~n-~~~~l~~~~~~E~ 295 (419)
.+.++... ..+..+++.++|...++++..++|+....|.|++.|+.....+...+..++ .+ ....++...+.|+
T Consensus 135 -~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~ 213 (293)
T TIGR00745 135 -ATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEV 213 (293)
T ss_pred -cEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHH
Confidence 24555431 125678899999999999999999999999999999744433333333333 23 3568999999999
Q ss_pred HHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcC
Q 014757 296 RAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRG 375 (419)
Q Consensus 296 ~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~g 375 (419)
.+++++.|...+++.+.. .+ ......-+. ...+.++|++ +|+.+|.+..++.++++|+++|
T Consensus 214 ~~v~~a~G~~~~~~~~~~------~~--------~~~~~~~~~-~~sSm~~D~~----~gr~tEid~i~G~~v~~a~~~g 274 (293)
T TIGR00745 214 VRVARAEGVDLPDDEVEE------LV--------RAVIRMTAE-NTSSMLQDLL----RGRRTEIDAINGAVVRLAEKLG 274 (293)
T ss_pred HHHHHhCCCCCCHHHHHH------HH--------HHHHhcCCC-CCChHHHHHH----cCCcchHHHhccHHHHHHHHcC
Confidence 999999963333222211 00 011111111 2112356664 5899999999999999999999
Q ss_pred CCcCCcHHHHHHHHHhCC
Q 014757 376 WLELFPLFATVHEICVGH 393 (419)
Q Consensus 376 v~~~~P~~~~~~~~l~~~ 393 (419)
+ ++|.++.+|++++..
T Consensus 275 v--~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 275 I--DAPVNRTLYALLKAL 290 (293)
T ss_pred C--CCChHHHHHHHHHHh
Confidence 9 999999999998753
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-24 Score=185.32 Aligned_cols=146 Identities=47% Similarity=0.718 Sum_probs=129.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCcc-chhcccCCcceeecccC--cc
Q 014757 252 QDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDS-TFFESCGVADLITTCLG--GR 328 (419)
Q Consensus 252 ~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~-~~~~~~~~~d~~~t~~~--~r 328 (419)
+|+.++|+++++||++|+++|+.+++++++|+.+++++++++||.++++++| .+++ +|++++|++|+++||++ +|
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~g--g~~~~t~~~laGlGDLi~T~~s~~sR 78 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKALG--GDPENTFFGLAGLGDLILTCTSDKSR 78 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT--SSCCGGGCSTTTHHHHHHHHHHTTSH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhC--CCCcccccccchHhhhHHHhcCCCCC
Confidence 5899999999999999999999999999999999999999999999999995 6888 99999999999999998 99
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHH
Q 014757 329 NRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYS 403 (419)
Q Consensus 329 n~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~ 403 (419)
|+++|..+++ +. .+++++.+.++.++++||...++.+.++++++++ ++|+++++|++++++.+|+++++.|
T Consensus 79 N~~~G~~l~~-g~-~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i--~~Pl~~~vy~Il~~~~~~~~~i~~l 149 (149)
T PF07479_consen 79 NRRFGKALGK-GG-KSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNI--EFPLFTAVYKILYENESPEEAIEEL 149 (149)
T ss_dssp HHHHHHHHHH-TT-S-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT---GSHHHHHHHHHHHS---HHHHHHHH
T ss_pred cHHHHHHHHc-cC-CCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHcCcCCHHHHHHcC
Confidence 9999999999 52 4788888776779999999999999999999999 9999999999999999999999865
|
1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B .... |
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=193.04 Aligned_cols=278 Identities=14% Similarity=0.119 Sum_probs=200.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
+..++|++||+|.||..|+.+|.++| |.|++|||+.++ ++.+.+.|. ++..+|
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G-------~kVtV~dr~~~k------~~~f~~~Ga--------------~v~~sP 85 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAG-------YKVTVYDRTKDK------CKEFQEAGA--------------RVANSP 85 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcC-------CEEEEEeCcHHH------HHHHHHhch--------------hhhCCH
Confidence 35679999999999999999999999 999999999887 788887663 466889
Q ss_pred HHHhcCCCEEEEccCc-chHHHHHHH---HhccCCCCcEE-EEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHH
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGICKR---LVGKVNGDVEA-ISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIAN 213 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl~~---l~~~l~~~tii-vs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~ 213 (419)
.|+.+++|+||.+||+ .++++++.. +...+.++... |++++ +++. +...+.+.+.. ..+..+.+|....
T Consensus 86 aeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmST-idp~--~s~ei~~~i~~---~~~~~vDAPVSGg 159 (327)
T KOG0409|consen 86 AEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMST-IDPD--TSLEIAKAISN---KGGRFVDAPVSGG 159 (327)
T ss_pred HHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccc-cCHH--HHHHHHHHHHh---CCCeEEeccccCC
Confidence 9999999999999997 677777743 33444565555 67764 5542 23333333332 2344444443322
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~ 293 (419)
.......+.++++++ |++.+++..++|+..|..+.+.... |....+++.+|........+++
T Consensus 160 ~~~A~~G~LtimagG-de~~~~~~~~~~~~mGk~~~~~G~~-----------------GnG~~~Kl~nnm~~g~~M~g~a 221 (327)
T KOG0409|consen 160 VKGAEEGTLTIMAGG-DEALFEAASPVFKLMGKNVVFLGGV-----------------GNGQAAKLCNNMLLGSSMVGLA 221 (327)
T ss_pred chhhhcCeEEEEecC-cHHHHHHHHHHHHHhcceEEEeccc-----------------CchHHHHHHHHHHHHHHHHHHH
Confidence 111112235578877 9999999999999999887775543 4455566778888888999999
Q ss_pred HHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014757 294 EMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 294 E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
|...++.++ |+++.++++....+ .|.++-.+.+++.+.+ ++ +.+.+..++| .||.+.+.+.+++
T Consensus 222 Eal~la~r~--GLd~~~l~eiln~G----~~~S~~~~~~~p~m~k-~d-y~p~f~~~~m--------~KDLgla~~~a~~ 285 (327)
T KOG0409|consen 222 EALALADRL--GLDAKKLLEILNTG----RCWSSMFYNPVPGMLK-GD-YNPGFALKLM--------VKDLGLALNAAES 285 (327)
T ss_pred HHHHHHHHc--CCCHHHHHHHHhcC----CcccHHHhCcCchhhc-CC-CCCcchHHHH--------HHHHHHHHHhhhc
Confidence 999999999 48998888753332 2333333444666665 43 4444443444 8899999999999
Q ss_pred cCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014757 374 RGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
.+. ++|+....+|++ ++++|.+.+++.++.
T Consensus 286 ~~~--~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~ 322 (327)
T KOG0409|consen 286 VKV--PMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRR 322 (327)
T ss_pred cCC--CCchHHHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 999 999999999988 479999999966554
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=190.83 Aligned_cols=272 Identities=12% Similarity=0.042 Sum_probs=187.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|+||+|||+|.||.+||..|+++| ++|++|+|++++ .+.+.+.| +..++++.+
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G-------~~V~v~d~~~~~------~~~~~~~g--------------~~~~~s~~~ 53 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQG-------HQLQVFDVNPQA------VDALVDKG--------------ATPAASPAQ 53 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCC-------CeEEEEcCCHHH------HHHHHHcC--------------CcccCCHHH
Confidence 469999999999999999999999 999999999876 56666543 234567777
Q ss_pred HhcCCCEEEEccCcc-hHHHHHH---HHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHH
Q 014757 141 AVKDANMLVFVTPHQ-FMEGICK---RLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIAN 213 (419)
Q Consensus 141 a~~~aDlVilavp~~-~~~~vl~---~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~ 213 (419)
++.++|+||+|+|+. .++.++. .+.+.+++++++|+++++-.. +...+.+.+.+. |. ++++..+|..+.
T Consensus 54 ~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~---~~~~l~~~l~~~-g~~~ldapV~g~~~~a~ 129 (296)
T PRK15461 54 AAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPL---QTDKLIADMQAK-GFSMMDVPVGRTSDNAI 129 (296)
T ss_pred HHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHH---HHHHHHHHHHHc-CCcEEEccCCCCHHHHH
Confidence 888999999999996 5888864 456667889999999875432 123333333332 33 234555554443
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~ 293 (419)
.|. .+++.++ +++.+++++++|+..+-++++.++.-..... |+.+|........++.
T Consensus 130 ---~g~--l~~~~gg-~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~-----------------Kl~~N~~~~~~~~~~~ 186 (296)
T PRK15461 130 ---TGT--LLLLAGG-TAEQVERATPILMAMGNELINAGGPGMGIRV-----------------KLINNYMSIALNALSA 186 (296)
T ss_pred ---hCc--EEEEECC-CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHH-----------------HHHHHHHHHHHHHHHH
Confidence 354 3355666 7899999999999888777777765333333 3444555556677889
Q ss_pred HHHHHHHHhcCCCCccchhcccCCcceeecccCcccH--HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHH
Q 014757 294 EMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR--KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVL 371 (419)
Q Consensus 294 E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~--~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a 371 (419)
|+..++++. |++++.+.+...-+ ...+... ...+.+.+ ++ ++.++ ......||++++.++|
T Consensus 187 Ea~~l~~~~--Gld~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~-~~-~~~~f--------~~~~~~KD~~l~~~~a 249 (296)
T PRK15461 187 EAAVLCEAL--GLSFDVALKVMSGT-----AAGKGHFTTTWPNKVLK-GD-LSPAF--------MIDLAHKDLGIALDVA 249 (296)
T ss_pred HHHHHHHHc--CCCHHHHHHHHhcC-----cccChHHHccccchhcc-CC-CCCCc--------chHHHHhhHHHHHHHH
Confidence 999999999 58998877642111 0011110 11112322 21 32221 1223478999999999
Q ss_pred HHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014757 372 SHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 372 ~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
++.|+ ++|+.+.+.+++ +++.|...+++++++
T Consensus 250 ~~~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 250 NQLHV--PMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHcCC--CChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999 999999999888 478999999999876
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-21 Score=184.94 Aligned_cols=270 Identities=13% Similarity=0.053 Sum_probs=183.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||.+||..|.++| ++|++|+|++. .+.+.+.| +....++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G-------~~v~v~~~~~~-------~~~~~~~g--------------~~~~~s~~~~ 52 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG-------HQLHVTTIGPV-------ADELLSLG--------------AVSVETARQV 52 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC-------CeEEEEeCCHh-------HHHHHHcC--------------CeecCCHHHH
Confidence 58999999999999999999999 89999999763 24444433 2345677787
Q ss_pred hcCCCEEEEccCcc-hHHHHHH---HHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHH
Q 014757 142 VKDANMLVFVTPHQ-FMEGICK---RLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANE 214 (419)
Q Consensus 142 ~~~aDlVilavp~~-~~~~vl~---~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e 214 (419)
...+|+||+|||+. ++++++. .+.+.+.+++++|++++ +.+. +.+.+.+.+.+. |.. +++..+|..+.
T Consensus 53 ~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT-~~p~--~~~~~~~~~~~~-G~~~vdaPVsGg~~~a~- 127 (292)
T PRK15059 53 TEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSS-ISPI--ETKRFARQVNEL-GGDYLDAPVSGGEIGAR- 127 (292)
T ss_pred HhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCC-CCHH--HHHHHHHHHHHc-CCCEEEecCCCCHHHHh-
Confidence 88999999999984 7788763 35566678999999875 4332 123344444432 432 33444443332
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHH
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLRE 294 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E 294 (419)
.|.. .++.++ +++.+++++++|+..+-++++..+.-.....|+ .+|........++.|
T Consensus 128 --~g~l--~~~~gG-~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl-----------------~~N~l~~~~~~a~~E 185 (292)
T PRK15059 128 --EGTL--SIMVGG-DEAVFERVKPLFELLGKNITLVGGNGDGQTCKV-----------------ANQIIVALNIEAVSE 185 (292)
T ss_pred --cCcE--EEEEcC-CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHH-----------------HHHHHHHHHHHHHHH
Confidence 3543 355556 788999999999988877666666433333343 345555556788999
Q ss_pred HHHHHHHhcCCCCccchhcccCCcceeecccCcccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014757 295 MRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 295 ~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
+..++++. |++++++.+....+. ..+... ..++.+.+ ++ +++.+ ......||+++++++|++
T Consensus 186 a~~la~~~--Gld~~~~~~~l~~~~-----~~s~~~~~~~~~~~~-~~-~~~~f--------~l~~~~KDl~l~~~~a~~ 248 (292)
T PRK15059 186 ALLFASKA--GADPVRVRQALMGGF-----ASSRILEVHGERMIK-RT-FNPGF--------KIALHQKDLNLALQSAKA 248 (292)
T ss_pred HHHHHHHc--CCCHHHHHHHHHcCc-----ccCHHHHhhchhhhc-CC-CCCCC--------chHHHHHHHHHHHHHHHH
Confidence 99999999 589988876421110 001111 11233333 21 32211 222347899999999999
Q ss_pred cCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014757 374 RGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
.|+ ++|+.+.+.+++ +++.|...++++++.
T Consensus 249 ~g~--~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 249 LAL--NLPNTATCQELFNTCAANGGSQLDHSALVQALEL 285 (292)
T ss_pred cCC--CChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 999 999999999888 468999999999886
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=191.29 Aligned_cols=281 Identities=17% Similarity=0.194 Sum_probs=199.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc------c-CCCeEe
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK------L-GKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~------l-~~~i~~ 134 (419)
|||+|||+|.||.++|..|+++| |+|++|++++++ ++.+++ |..+.+.++.. + ..++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G-------~~V~~~d~~~~~------v~~l~~-g~~~~~e~~l~~~~~~~~~~g~l~~ 66 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG-------HEVTGVDIDQEK------VDKLNK-GKSPIYEPGLDELLAKALAAGRLRA 66 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC-------CeEEEEECCHHH------HHHhhc-CCCCCCCCCHHHHHHHhhhcCCeEE
Confidence 68999999999999999999999 999999999876 677765 33333333321 0 123677
Q ss_pred cCCHHHHhcCCCEEEEccCcc----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHH-HHHHhHhC---
Q 014757 135 DPDLENAVKDANMLVFVTPHQ----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMIS-TLISEQLG--- 200 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~-~~i~~~~g--- 200 (419)
+++++++++++|+||+|||+. ++.++++.+.+.++++++||..+ ++.+. +...+. +++++..|
T Consensus 67 ~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pg--t~~~l~~~~~~~~~g~~~ 143 (411)
T TIGR03026 67 TTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPG--TTEEVVKPILERASGLKL 143 (411)
T ss_pred ECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCC--chHHHHHHHHHhhcCCCC
Confidence 788888889999999999975 48888888988888899888765 46543 233333 44443222
Q ss_pred -CceEEEeCcchHHHHHh----cCceeEEEeecCCHHHHHHHHHHhCCCC-cEEEEcCcHHHHHHHHHHHHHHHHHHHhh
Q 014757 201 -VSCCVLMGANIANEIAV----EKFSEATVGYRDNREIAEKWVQLFSTPY-FMVTAVQDVEGVELCGTLKNVVAIAAGFV 274 (419)
Q Consensus 201 -~~~~v~~gp~~a~e~~~----g~~~~~~~~~~~~~~~~~~l~~ll~~~g-~~~~~~~di~~~e~~~al~Ni~a~~~g~~ 274 (419)
..+.+.++|.++.+... ..+..++.+ . +.+..++++++|+..+ ..++...++...+..|++.|.+
T Consensus 144 ~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~------- 214 (411)
T TIGR03026 144 GEDFYLAYNPEFLREGNAVHDLLNPDRIVGG-E-TEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTF------- 214 (411)
T ss_pred CCCceEEECCCcCCCCChhhhhcCCCEEEEe-C-CHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHH-------
Confidence 34678899987653211 223334444 5 7889999999999775 3566778888888888877764
Q ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhc
Q 014757 275 DGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQ 354 (419)
Q Consensus 275 ~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~ 354 (419)
.+.....++|+.++|+++ |+|++++.+..+.+..+ ..+.+..|..++ | .+
T Consensus 215 ----------~a~~ia~~nE~~~la~~~--GiD~~~v~~~~~~~~~i----~~~~~~pg~g~g--g--~c---------- 264 (411)
T TIGR03026 215 ----------RAVKIAFANELARICEAL--GIDVYEVIEAAGTDPRI----GFNFLNPGPGVG--G--HC---------- 264 (411)
T ss_pred ----------HHHHHHHHHHHHHHHHHh--CCCHHHHHHHhCCCCCC----CCCcCCCCCCCC--C--Cc----------
Confidence 344567899999999999 58998888765443211 011111111111 1 12
Q ss_pred CCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 014757 355 GQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407 (419)
Q Consensus 355 g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (419)
..||.++++..|++.|+ ++|+.+++.++ ++..|..+++.+.+.+
T Consensus 265 -----~~KD~~~l~~~a~~~g~--~~~l~~~~~~~--N~~~~~~~~~~~~~~l 308 (411)
T TIGR03026 265 -----IPKDPLALIYKAKELGY--NPELIEAAREI--NDSQPDYVVEKILDLL 308 (411)
T ss_pred -----hhhhHHHHHHHHHhcCC--CcHHHHHHHHH--HHHhHHHHHHHHHHHh
Confidence 26799999999999999 99999999999 5557888888887754
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=180.35 Aligned_cols=272 Identities=13% Similarity=0.137 Sum_probs=181.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+|||+|||+|.||..+|..|++.| ++|.+|+|++++ .+.+.+.+ +..++++++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g-------~~v~~~d~~~~~------~~~~~~~g--------------~~~~~~~~e 54 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAG-------YSLVVYDRNPEA------VAEVIAAG--------------AETASTAKA 54 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCC-------CeEEEEcCCHHH------HHHHHHCC--------------CeecCCHHH
Confidence 479999999999999999999999 899999998765 45555533 235567778
Q ss_pred HhcCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHH
Q 014757 141 AVKDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIAN 213 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~ 213 (419)
++.++|+||+|+|. ..++.++ +++.+.+.++++++++++.. +. +.+.+.+.+.+. |.+ +++..++..+.
T Consensus 55 ~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~-~~--~~~~l~~~~~~~-g~~~~d~pv~g~~~~a~ 130 (296)
T PRK11559 55 VAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIA-PL--ASREIAAALKAK-GIEMLDAPVSGGEPKAI 130 (296)
T ss_pred HHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCC-HH--HHHHHHHHHHHc-CCcEEEcCCCCCHHHHh
Confidence 78899999999996 5667776 45777788899999887532 21 122333333322 322 23333433222
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~ 293 (419)
.|.. .++.++ +.+.++++.++|+..+.++....+....+..|.+.| ........+++
T Consensus 131 ---~g~l--~i~~gg-~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n-----------------~~~~~~~~~~~ 187 (296)
T PRK11559 131 ---DGTL--SVMVGG-DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQ-----------------VIVALNIAAMS 187 (296)
T ss_pred ---hCcE--EEEECC-CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 3432 244445 688899999999988777666655434444454444 44455578899
Q ss_pred HHHHHHHHhcCCCCccchhcccCCcceeecccCcccH-HHHHHhhhccCCCCHHHHHHHHhcCCee-ehHHHHHHHHHHH
Q 014757 294 EMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKL-QGVSTAREVYEVL 371 (419)
Q Consensus 294 E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~-Eg~~~~~~v~~~a 371 (419)
|+..++++. |++++++.+....+ ...+... ..+..+.+ ++ +.. |.+. ...||+++++++|
T Consensus 188 Ea~~l~~~~--Gi~~~~~~~~l~~~-----~~~s~~~~~~~~~~~~-~d-~~~---------~f~~~~~~KDl~~~~~~a 249 (296)
T PRK11559 188 EALVLATKA--GVNPDLVYQAIRGG-----LAGSTVLDAKAPMVMD-RN-FKP---------GFRIDLHIKDLANALDTS 249 (296)
T ss_pred HHHHHHHHc--CCCHHHHHHHHhcC-----cccCHHHHhhchHhhc-CC-CCC---------CcchHHHHHHHHHHHHHH
Confidence 999999999 48888776532111 0001111 01122222 11 221 1111 2367999999999
Q ss_pred HHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhcC
Q 014757 372 SHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSERK 406 (419)
Q Consensus 372 ~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~~ 406 (419)
++.|+ ++|+.+.+++.+ +++.|...+++++++.
T Consensus 250 ~~~g~--~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 289 (296)
T PRK11559 250 HGVGA--PLPLTAAVMEMMQALKADGLGTADHSALACYYEKL 289 (296)
T ss_pred HHcCC--CChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHh
Confidence 99999 999999999988 5799999999999874
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=180.82 Aligned_cols=268 Identities=15% Similarity=0.098 Sum_probs=182.5
Q ss_pred EECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCC
Q 014757 66 VVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDA 145 (419)
Q Consensus 66 IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~a 145 (419)
|||+|.||.+||..|+++| ++|++|+|++++ .+.+.+.| +..+++++++++++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G-------~~V~v~dr~~~~------~~~l~~~g--------------~~~~~s~~~~~~~a 53 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG-------HPVRVFDLFPDA------VEEAVAAG--------------AQAAASPAEAAEGA 53 (288)
T ss_pred CCcccHhHHHHHHHHHhCC-------CeEEEEeCCHHH------HHHHHHcC--------------CeecCCHHHHHhcC
Confidence 6899999999999999999 999999998766 56666544 23566788888999
Q ss_pred CEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHHHHhc
Q 014757 146 NMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANEIAVE 218 (419)
Q Consensus 146 DlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e~~~g 218 (419)
|+||+|||+ .++++++ +++.+.+.+++++|+++ ++.++ +.+.+++.+.+. |.. +++..||..+. .|
T Consensus 54 dvVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~s-t~~p~--~~~~~~~~~~~~-g~~~vdaPv~Gg~~~a~---~g 126 (288)
T TIGR01692 54 DRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCS-TIDPD--SARKLAELAAAH-GAVFMDAPVSGGVGGAR---AG 126 (288)
T ss_pred CEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEEECC-CCCHH--HHHHHHHHHHHc-CCcEEECCCCCCHHHHh---hC
Confidence 999999998 6788888 67888888899999988 46542 234444554442 432 34445554443 35
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Q 014757 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
. ..++.++ +.+.+++++++|+..+-++.+.++.-..+..|++ +|........++.|+..+
T Consensus 127 ~--l~~~~gg-~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~-----------------~n~~~~~~~~~~~Ea~~l 186 (288)
T TIGR01692 127 T--LTFMVGG-VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKIC-----------------NNMLLGISMIGTAEAMAL 186 (288)
T ss_pred c--EEEEECC-CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence 4 3455556 7788999999999887777776664333444444 444455567789999999
Q ss_pred HHHhcCCCCccchhcccCCcceeecccCcccHHHH-H----HhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014757 299 SKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVA-E----AFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 299 a~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g-~----~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
+++. |++++++.+....+.-. +....++... . .+.+ ++ ++..+ ......||.+.+.++|++
T Consensus 187 a~~~--Gld~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~-~~-~~~~f--------~~~~~~KDl~~~~~~a~~ 252 (288)
T TIGR01692 187 GEKL--GLDPKVLFEIANTSSGR--CWSSDTYNPVPGVMPQAPAS-NG-YQGGF--------GTALMLKDLGLAQDAAKS 252 (288)
T ss_pred HHHc--CCCHHHHHHHHhcCCcc--CcHHHHhCCCcccccccccc-CC-CCCCc--------chHHHHhhHHHHHHHHHH
Confidence 9999 58998887642211000 0000000000 0 0111 11 22111 122447899999999999
Q ss_pred cCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHH
Q 014757 374 RGWLELFPLFATVHEIC-------VGHLPPSAIVEYS 403 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~ 403 (419)
.|+ ++|+.+.+.+++ +++.|...+++++
T Consensus 253 ~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 253 AGA--PTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred cCC--CChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 999 999999999988 4688999998875
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-20 Score=179.13 Aligned_cols=271 Identities=15% Similarity=0.107 Sum_probs=179.4
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
||+|||+|.||..+|..|+++| ++|++|+|++++ .+.+.+.|. ...+++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-------~~V~~~dr~~~~------~~~~~~~g~--------------~~~~~~~~~~ 53 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-------YQLHVTTIGPEV------ADELLAAGA--------------VTAETARQVT 53 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-------CeEEEEcCCHHH------HHHHHHCCC--------------cccCCHHHHH
Confidence 5999999999999999999999 999999998765 566655442 2345677788
Q ss_pred cCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHH--HH
Q 014757 143 KDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANE--IA 216 (419)
Q Consensus 143 ~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e--~~ 216 (419)
.++|+||+|+|+ ..++.++ +.+.+.+++++++|++++.... +...+.+.+++. |.+ ++.+|....+ ..
T Consensus 54 ~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~---~~~~l~~~l~~~-g~~--~~~~pv~g~~~~a~ 127 (291)
T TIGR01505 54 EQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPI---ESKRFAKAVKEK-GID--YLDAPVSGGEIGAI 127 (291)
T ss_pred hcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHH---HHHHHHHHHHHc-CCC--EEecCCCCCHHHHh
Confidence 899999999997 4666665 3466677889999987753321 122333444332 322 2333432111 11
Q ss_pred hcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHH
Q 014757 217 VEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMR 296 (419)
Q Consensus 217 ~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~ 296 (419)
.+. ..++.++ +++.++++.++|+..+.++.+.++....+..|+. +|........+++|+.
T Consensus 128 ~g~--l~i~~gg-~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~-----------------~n~~~~~~~~~~~Ea~ 187 (291)
T TIGR01505 128 EGT--LSIMVGG-DQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVA-----------------NQIIVALNIEAVSEAL 187 (291)
T ss_pred cCC--EEEEecC-CHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Confidence 233 2345555 7888999999999888777666553333333433 4455566778899999
Q ss_pred HHHHHhcCCCCccchhcccCCcceeecccCcccHH-HHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcC
Q 014757 297 AFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRK-VAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRG 375 (419)
Q Consensus 297 ~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~-~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~g 375 (419)
.++++. |++++++.+...-+. ..+.... .+..+.. ++ ++..+ ...-..||++.+.+++++.|
T Consensus 188 ~l~~~~--Gid~~~~~~~l~~~~-----~~s~~~~~~~~~~~~-~~-~~~~f--------~~~~~~KDl~~~~~~a~~~g 250 (291)
T TIGR01505 188 VFASKA--GVDPVRVRQALRGGL-----AGSTVLEVKGERVID-RT-FKPGF--------RIDLHQKDLNLALDSAKAVG 250 (291)
T ss_pred HHHHHc--CCCHHHHHHHHhcCc-----ccCHHHHhhChhhhc-CC-CCCCc--------chHHHHHHHHHHHHHHHHcC
Confidence 999999 589988876422110 0011110 1122222 11 22111 11233789999999999999
Q ss_pred CCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014757 376 WLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 376 v~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
+ ++|+.+.+.+++ +++.|...++++++.
T Consensus 251 ~--~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 251 A--NLPNTATVQELFNTLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred C--CChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9 999999999888 479999999999976
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-19 Score=201.27 Aligned_cols=271 Identities=13% Similarity=0.077 Sum_probs=195.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||+|||+|.||..||.+|+++| ++|++|||++++ ++.+.+.| +...+++.+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G-------~~v~v~dr~~~~------~~~l~~~G--------------a~~~~s~~e 56 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSG-------FKVQAFEISTPL------MEKFCELG--------------GHRCDSPAE 56 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCC-------CeEEEEcCCHHH------HHHHHHcC--------------CeecCCHHH
Confidence 368999999999999999999999 999999999876 67776644 345678889
Q ss_pred HhcCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC--C---ceEEEeCcch
Q 014757 141 AVKDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG--V---SCCVLMGANI 211 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g--~---~~~v~~gp~~ 211 (419)
+.++||+||+|+|+ .++++++ +.+.+.+.+++++|.+++ +.+. +.+.+++.+.+. | . ++++.+||..
T Consensus 57 ~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~ST-i~p~--~~~~la~~l~~~-g~~~~~lDaPVsGg~~~ 132 (1378)
T PLN02858 57 AAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRST-ILPL--QLQKLEKKLTER-KEQIFLVDAYVSKGMSD 132 (1378)
T ss_pred HHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCC-CCHH--HHHHHHHHHHhc-CCceEEEEccCcCCHHH
Confidence 89999999999997 6788886 467777888999999875 4432 233444444443 4 2 2355556655
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE-cCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHH
Q 014757 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA-VQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRI 290 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~-~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~ 290 (419)
+. .|+ ..++.++ +.+.+++++++|+..+-++++ .++. |....+|+.+|........
T Consensus 133 A~---~G~--L~imvGG-~~~~~~~~~p~l~~~g~~i~~~~G~~-----------------G~g~~~KL~nN~l~~~~~~ 189 (1378)
T PLN02858 133 LL---NGK--LMIIASG-RSDAITRAQPFLSAMCQKLYTFEGEI-----------------GAGSKVKMVNELLEGIHLV 189 (1378)
T ss_pred Hh---cCC--eEEEEcC-CHHHHHHHHHHHHHhcCceEEecCCC-----------------CHhHHHHHHHHHHHHHHHH
Confidence 54 354 3466666 789999999999988877654 3554 2233344555666667788
Q ss_pred HHHHHHHHHHHhcCCCCccchhcccCCcceeecccC-cccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHH
Q 014757 291 GLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLG-GRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVY 368 (419)
Q Consensus 291 ~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~-~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~ 368 (419)
++.|+..++++. |++++.+++....+ .. +... .....+.+ ++ +++.+. .....||++++.
T Consensus 190 a~aEAl~la~~~--Gld~~~l~~vl~~s------~g~s~~~~~~~~~~~~-~d-~~~~F~--------l~l~~KDl~la~ 251 (1378)
T PLN02858 190 ASAEAMALGVRA--GIHPWIIYDIISNA------AGSSWIFKNHVPLLLK-DD-YIEGRF--------LNVLVQNLGIVL 251 (1378)
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHhcC------CccCHHHHhhhhHhhc-CC-CCCCch--------hHHHHHHHHHHH
Confidence 999999999999 58999887642111 11 1111 12334443 32 332222 123478999999
Q ss_pred HHHHHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014757 369 EVLSHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 369 ~~a~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
++|++.|+ ++|+.+.+.+++ +++.|...++++++.
T Consensus 252 ~~A~~~g~--~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 252 DMAKSLPF--PLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred HHHHHcCC--CChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 99999999 999999999988 478999999998877
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=169.55 Aligned_cols=279 Identities=19% Similarity=0.213 Sum_probs=204.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-c------CCCeEe
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-L------GKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-l------~~~i~~ 134 (419)
|||+|||+|.+|...|.+|++.| |+|.++|.++++ ++.|++ |..+.|.|+.. + ..++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G-------HeVv~vDid~~K------V~~ln~-g~~PI~EpgLe~ll~~~~~~gRl~f 66 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG-------HEVVCVDIDESK------VELLNK-GISPIYEPGLEELLKENLASGRLRF 66 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC-------CeEEEEeCCHHH------HHHHhC-CCCCCcCccHHHHHHhccccCcEEE
Confidence 89999999999999999999999 999999999988 888887 66677777752 1 234889
Q ss_pred cCCHHHHhcCCCEEEEccCcc----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh-CCce
Q 014757 135 DPDLENAVKDANMLVFVTPHQ----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL-GVSC 203 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~-g~~~ 203 (419)
|+|.++++.++|++|+||++. +++++.+.+.+.+...++||.=++ +++. +...+.+.+.+.. +..+
T Consensus 67 Ttd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KST-VPvG--t~~~v~~~i~~~~~~~~f 143 (414)
T COG1004 67 TTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKST-VPVG--TTEEVRAKIREENSGKDF 143 (414)
T ss_pred EcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCC-CCCC--chHHHHHHHHhhcccCCc
Confidence 999999999999999999862 588889999999877666654332 4432 2334444444332 2357
Q ss_pred EEEeCcchHHHHH----hcCceeEEEeecCCHHHHHHHHHHhCCC---CcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhc
Q 014757 204 CVLMGANIANEIA----VEKFSEATVGYRDNREIAEKWVQLFSTP---YFMVTAVQDVEGVELCGTLKNVVAIAAGFVDG 276 (419)
Q Consensus 204 ~v~~gp~~a~e~~----~g~~~~~~~~~~~~~~~~~~l~~ll~~~---g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~ 276 (419)
.+.+.|.+.+|.. .-.|..+++|.. ++...+.+++++... ..++.. .+...+|+-|...
T Consensus 144 ~v~~NPEFLREG~Av~D~~~PdRIViG~~-~~~a~~~~~ely~~~~~~~~p~l~-t~~~~AE~IKyaa------------ 209 (414)
T COG1004 144 EVASNPEFLREGSAVYDFLYPDRIVIGVR-SERAAAVLRELYAPFLRQDVPILF-TDLREAELIKYAA------------ 209 (414)
T ss_pred eEecChHHhcCcchhhhccCCCeEEEccC-ChhHHHHHHHHHhhhhhcCCCEEE-ecchHHHHHHHHH------------
Confidence 7999999877532 234667888877 555677788887642 444433 4666777766443
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhcc---CCCCHHHHHHHHh
Q 014757 277 LEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNE---GKRSFDDLEAEML 353 (419)
Q Consensus 277 ~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g---~~~~~~~~~~~~~ 353 (419)
|...+.-..-++|+..+|++.| +|-+++.+-.|.++.+ |..+-+.| +++++
T Consensus 210 -----NafLAtKIsFiNEia~ice~~g--~D~~~V~~gIGlD~RI-----------G~~fl~aG~GyGGsCf-------- 263 (414)
T COG1004 210 -----NAFLATKISFINEIANICEKVG--ADVKQVAEGIGLDPRI-----------GNHFLNAGFGYGGSCF-------- 263 (414)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHcCCCchh-----------hHhhCCCCCCCCCcCC--------
Confidence 4555566777999999999995 7877777644444322 33322211 11564
Q ss_pred cCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 014757 354 QGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKPR 408 (419)
Q Consensus 354 ~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (419)
+||.+++++.|+++|+ +.++++++.+. ++..+..+++.+.++..
T Consensus 264 -------PKD~~AL~~~a~~~~~--~~~ll~avv~v--N~~qk~~~~~~i~~~~~ 307 (414)
T COG1004 264 -------PKDTKALIANAEELGY--DPNLLEAVVEV--NERRKDKLAEKILNHLG 307 (414)
T ss_pred -------cHhHHHHHHHHHhcCC--chHHHHHHHHH--HHHHHHHHHHHHHHhcC
Confidence 6799999999999999 99999999999 66788999999998777
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=176.83 Aligned_cols=271 Identities=12% Similarity=-0.026 Sum_probs=173.5
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..++++|+|||+|.||..||.+|+++| ++|++|||++++ ++.+.+.+... +. ..+....+
T Consensus 3 ~~~~~~IG~IGLG~MG~~mA~nL~~~G-------~~V~V~NRt~~k------~~~l~~~~~~~----Ga---~~~~~a~s 62 (493)
T PLN02350 3 SAALSRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTSK------VDETVERAKKE----GN---LPLYGFKD 62 (493)
T ss_pred CCCCCCEEEEeeHHHHHHHHHHHHhCC-------CeEEEECCCHHH------HHHHHHhhhhc----CC---cccccCCC
Confidence 345678999999999999999999999 999999999876 55555421000 00 01234577
Q ss_pred HHHHhcC---CCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcc
Q 014757 138 LENAVKD---ANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGAN 210 (419)
Q Consensus 138 ~~ea~~~---aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~ 210 (419)
+++++.. +|+||+|||+ ..++++++.+.+.+.+++++|+++|.-... .....+.+.+. |.+ ++|.+||.
T Consensus 63 ~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~---t~~~~~~l~~~-Gi~fldapVSGG~~ 138 (493)
T PLN02350 63 PEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYEN---TERRIKEAAEK-GLLYLGMGVSGGEE 138 (493)
T ss_pred HHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHH---HHHHHHHHHHc-CCeEEeCCCcCCHH
Confidence 8887765 9999999997 688999999999999999999998743221 22333333332 432 45666666
Q ss_pred hHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE------EEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHH
Q 014757 211 IANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM------VTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTK 284 (419)
Q Consensus 211 ~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~------~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~ 284 (419)
.|. .| + .++.++ +++.+++++++|+..+-+ +.+.++. |....+|+.+|..
T Consensus 139 gA~---~G-~--~im~GG-~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~-----------------GaG~~vKlv~N~i 194 (493)
T PLN02350 139 GAR---NG-P--SLMPGG-SFEAYKNIEDILEKVAAQVDDGPCVTYIGPG-----------------GAGNFVKMVHNGI 194 (493)
T ss_pred Hhc---CC-C--eEEecC-CHHHHHHHHHHHHHHhhhcCCCCcEEEeCCc-----------------CHHHHHHHHHHHH
Confidence 544 34 2 345556 789999999999877643 5555553 2233344456666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccchhcccC-CcceeecccCcccHH-HHHHhhhccCCCCHHHHHHHHhcCCeeehHH
Q 014757 285 AAIMRIGLREMRAFSKLLFSSVKDSTFFESCG-VADLITTCLGGRNRK-VAEAFAKNEGKRSFDDLEAEMLQGQKLQGVS 362 (419)
Q Consensus 285 ~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~-~~d~~~t~~~~rn~~-~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~ 362 (419)
......++.|+..++++.. |++++.+.+... +. .....+.-.. .+..+.. .+.++.....+ ...+
T Consensus 195 ~~~~m~~iaEA~~l~~~~~-Gld~~~l~~vf~~~~---~g~~~S~llei~~~~l~~-~d~~~~~f~l~--------~i~K 261 (493)
T PLN02350 195 EYGDMQLISEAYDVLKSVG-GLSNEELAEVFAEWN---KGELESFLIEITADIFSV-KDDKGDGYLVD--------KILD 261 (493)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHc---CCCccchHHHHHHHHHhh-cCCCCCCchHH--------HHHh
Confidence 6778899999999999842 488888765310 10 0011121111 1222322 11011111111 2245
Q ss_pred HHH------HHHHHHHHcCCCcCCcH-HHHHHHHHh
Q 014757 363 TAR------EVYEVLSHRGWLELFPL-FATVHEICV 391 (419)
Q Consensus 363 ~~~------~v~~~a~~~gv~~~~P~-~~~~~~~l~ 391 (419)
+++ ..+..|.+.|+ ++|+ .+++.+.+.
T Consensus 262 d~~~kGTg~w~~~~A~~lgv--~~p~i~~av~~r~~ 295 (493)
T PLN02350 262 KTGMKGTGKWTVQQAAELSV--AAPTIAASLDARYL 295 (493)
T ss_pred hhcccchHHHHHHHHHHhCC--CccHHHHHHHHHHH
Confidence 555 78889999999 9999 677776663
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=167.12 Aligned_cols=255 Identities=14% Similarity=0.057 Sum_probs=169.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||..||..|.++| ++|++|+|++++ .+.+.+.| +..+.+++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g-------~~v~v~dr~~~~------~~~~~~~g--------------~~~~~s~~~~ 53 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG-------HEVVGYDVNQEA------VDVAGKLG--------------ITARHSLEEL 53 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC-------CEEEEEECCHHH------HHHHHHCC--------------CeecCCHHHH
Confidence 58999999999999999999999 899999998765 56665533 2456677776
Q ss_pred hcC---CCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHHH
Q 014757 142 VKD---ANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIANE 214 (419)
Q Consensus 142 ~~~---aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~e 214 (419)
+++ +|+||+|+|+. .++++++.+.+.+++++++|++++.-.. +...+.+.+.+. |. ++++..+|..+.
T Consensus 54 ~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~---~~~~~~~~~~~~-g~~~vdapV~G~~~~a~- 128 (299)
T PRK12490 54 VSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYK---DDLRRAEELAER-GIHYVDCGTSGGVWGLR- 128 (299)
T ss_pred HHhCCCCCEEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCch---hHHHHHHHHHHc-CCeEEeCCCCCCHHHHh-
Confidence 655 69999999996 9999999999888889999999764332 123333444332 33 234445544333
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCc---EEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHH
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYF---MVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIG 291 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~---~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~ 291 (419)
.|. .++.++ +++.+++++++|+..+- ++++.++.-. ...+|+.+|........+
T Consensus 129 --~g~---~~~~gG-~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~-----------------a~~~Kl~~n~~~~~~~~~ 185 (299)
T PRK12490 129 --NGY---CLMVGG-DKEIYDRLEPVFKALAPEGPGYVHAGPVGS-----------------GHFLKMVHNGIEYGMMQA 185 (299)
T ss_pred --cCC---eEEecC-CHHHHHHHHHHHHHhcCcCCcEEEECCcCH-----------------HHHHHHHHHHHHHHHHHH
Confidence 343 345555 78889999999998775 4555565422 233344456666778899
Q ss_pred HHHHHHHHHHhcCCCCccchhcccCCcceeecc-cCcccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHH---HH
Q 014757 292 LREMRAFSKLLFSSVKDSTFFESCGVADLITTC-LGGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTA---RE 366 (419)
Q Consensus 292 ~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~-~~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~---~~ 366 (419)
+.|+..++++.|.+++++++++.-.. .+ ..+... .....+.. + .....+ + ...||. +.
T Consensus 186 ~aEa~~l~~~~g~~ld~~~~~~~~~~-----~~~~~s~~l~~~~~~~~~-~--~~~~~l-~--------~~~KD~~~~~l 248 (299)
T PRK12490 186 YAEGLELLDKSDFDFDVEDVARLWRN-----GSVIRSWLLDLTVKALAE-D--PKLAGI-K--------GYVNDSGEGRW 248 (299)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHcC-----CcHHHHHHHHHHHHHHhh-C--CChhhh-h--------HHHHhcCcHHH
Confidence 99999999999423788888764211 11 011111 11233332 2 111111 1 224565 68
Q ss_pred HHHHHHHcCCCcCCcHHHHHH-HHH
Q 014757 367 VYEVLSHRGWLELFPLFATVH-EIC 390 (419)
Q Consensus 367 v~~~a~~~gv~~~~P~~~~~~-~~l 390 (419)
+++.|++.|+ ++|+...+. .++
T Consensus 249 ~~~~A~~~g~--~~P~~~~a~~~~~ 271 (299)
T PRK12490 249 TVEEAIELAV--AAPVIAASLFMRF 271 (299)
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHH
Confidence 9999999999 999999984 444
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-18 Score=193.52 Aligned_cols=274 Identities=12% Similarity=0.040 Sum_probs=189.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+++|+|||+|.||.+||..|+++| ++|++|+|++++ .+.+...| ....++++
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G-------~~V~v~dr~~~~------~~~l~~~G--------------a~~~~s~~ 375 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSN-------FSVCGYDVYKPT------LVRFENAG--------------GLAGNSPA 375 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcC--------------CeecCCHH
Confidence 3578999999999999999999999 999999998766 56666543 23456788
Q ss_pred HHhcCCCEEEEccC-cchHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhH-hCC---ceEEEeCcch
Q 014757 140 NAVKDANMLVFVTP-HQFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQ-LGV---SCCVLMGANI 211 (419)
Q Consensus 140 ea~~~aDlVilavp-~~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~-~g~---~~~v~~gp~~ 211 (419)
+++.++|+||+||| +.++++++ ..+.+.+.+++++|.+++ +.+. +.+.+.+.+.+. .|. ++++..||..
T Consensus 376 e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~ST-vsP~--~~~~la~~l~~~g~g~~~lDAPVsGg~~~ 452 (1378)
T PLN02858 376 EVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSST-VSPG--FVIQLERRLENEGRDIKLVDAPVSGGVKR 452 (1378)
T ss_pred HHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCC-CCHH--HHHHHHHHHHhhCCCcEEEEccCCCChhh
Confidence 88899999999999 57888887 346677788999999876 4332 233444444442 132 2345555554
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE-cCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHH
Q 014757 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA-VQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRI 290 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~-~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~ 290 (419)
+. .|.. .++.++ +++.+++++++|+..+-++++ .++.-.....|++ +|........
T Consensus 453 A~---~G~L--~imvgG-~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~-----------------nN~l~~~~~a 509 (1378)
T PLN02858 453 AA---MGTL--TIMASG-TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMV-----------------NQLLAGVHIA 509 (1378)
T ss_pred hh---cCCc--eEEEEC-CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHH-----------------HHHHHHHHHH
Confidence 44 3543 456666 788999999999988766655 4555444444444 4455556688
Q ss_pred HHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHH
Q 014757 291 GLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYE 369 (419)
Q Consensus 291 ~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~ 369 (419)
++.|+..++++. |++++++++...-+. ..+..+ ...+.+.. ++ +++.+ ......||++++++
T Consensus 510 a~aEal~la~k~--Gld~~~l~evl~~s~-----g~s~~~~~~~~~~l~-~d-~~~~f--------~l~l~~KDl~l~~~ 572 (1378)
T PLN02858 510 SAAEAMAFGARL--GLNTRKLFDIISNAG-----GTSWMFENRVPHMLD-ND-YTPYS--------ALDIFVKDLGIVSR 572 (1378)
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHhhc-----ccChhhhhccchhhc-CC-CCCCc--------hhHHHHHHHHHHHH
Confidence 999999999999 589988876421110 001111 11223332 21 33221 12234789999999
Q ss_pred HHHHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014757 370 VLSHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 370 ~a~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
.+++.|+ ++|+.+.+.+++ +++.|..+++++++.
T Consensus 573 ~a~~~g~--~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 573 EGSSRKI--PLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHcCC--CChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999 999999999888 468999999999876
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=163.84 Aligned_cols=274 Identities=12% Similarity=0.059 Sum_probs=177.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||.++|..|+++| ++|++|+|++++ ++.+.+.| +..+++++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g-------~~v~v~dr~~~~------~~~~~~~g--------------~~~~~~~~e~ 53 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG-------HEVVGYDRNPEA------VEALAEEG--------------ATGADSLEEL 53 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC-------CeEEEEECCHHH------HHHHHHCC--------------CeecCCHHHH
Confidence 68999999999999999999999 999999999866 56665543 3456677776
Q ss_pred hcC---CCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHH
Q 014757 142 VKD---ANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANE 214 (419)
Q Consensus 142 ~~~---aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e 214 (419)
+.. +|+||+++|+. .++++++.+.+.+++++++|+++++-... ...+.+.+++. |.. +++..||..+.
T Consensus 54 ~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~---~~~~~~~~~~~-g~~~~dapvsG~~~~a~- 128 (301)
T PRK09599 54 VAKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKD---DIRRAELLAEK-GIHFVDVGTSGGVWGLE- 128 (301)
T ss_pred HhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhH---HHHHHHHHHHc-CCEEEeCCCCcCHHHHh-
Confidence 654 69999999986 88999999988888999999998754321 23333444332 432 34444544433
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCc----EEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHH
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYF----MVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRI 290 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~----~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~ 290 (419)
.| . .++.++ +++.+++++++|+..+- ++.+.+++-.....| +.+|........
T Consensus 129 --~g-~--~~~~gG-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~K-----------------l~~n~l~~~~~~ 185 (301)
T PRK09599 129 --RG-Y--CLMIGG-DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVK-----------------MVHNGIEYGMMQ 185 (301)
T ss_pred --cC-C--eEEecC-CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHH-----------------HHHHHHHHHHHH
Confidence 34 2 345556 78899999999988776 566666643223333 334555566788
Q ss_pred HHHHHHHHHHHhcCCCCccchhcccCCcceeeccc-CcccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHH
Q 014757 291 GLREMRAFSKLLFSSVKDSTFFESCGVADLITTCL-GGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVY 368 (419)
Q Consensus 291 ~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~-~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~ 368 (419)
++.|...++++.+.|++++++++.-.. .|. .+.-. ...+.+.+ . ..++.+ +.+ ..-.++.+.++
T Consensus 186 ~~aEa~~l~~~~~~gld~~~~~~~~~~-----~~~~~s~~l~~~~~~~~~-~--~~~~~~-~~~-----~kd~~~~~~~~ 251 (301)
T PRK09599 186 AYAEGFELLEASRFDLDLAAVAEVWRR-----GSVIRSWLLDLTADALAE-D--PKLDEI-SGY-----VEDSGEGRWTV 251 (301)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHhC-----CcHHHHHHHHHHHHHHhc-C--CCHHHH-HHH-----HHhhCcHHHHH
Confidence 899999999992225899888764211 111 11111 12333322 1 112211 010 00033458899
Q ss_pred HHHHHcCCCcCCcHHHH-HHHHH---hCCCCHHHHHHHHhcC
Q 014757 369 EVLSHRGWLELFPLFAT-VHEIC---VGHLPPSAIVEYSERK 406 (419)
Q Consensus 369 ~~a~~~gv~~~~P~~~~-~~~~l---~~~~~~~~~~~~~~~~ 406 (419)
+.|.+.|+ ++|.... ++..+ .....+...++-+++.
T Consensus 252 ~~A~~~~~--~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~ 291 (301)
T PRK09599 252 EEAIDLAV--PAPVIAAALFMRFRSRQEDSFADKVVAALRNG 291 (301)
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHh
Confidence 99999999 9999999 44323 3445566666666554
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-17 Score=158.03 Aligned_cols=275 Identities=10% Similarity=0.049 Sum_probs=174.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH-
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN- 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e- 140 (419)
|||+|||+|.||+++|..|+++| ++|.+|+|++++ ++.+.+.+.. ...++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g-------~~V~~~dr~~~~------~~~l~~~g~~--------------~~~s~~~~ 53 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG-------HDCVGYDHDQDA------VKAMKEDRTT--------------GVANLREL 53 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHHcCCc--------------ccCCHHHH
Confidence 68999999999999999999999 999999999876 6666664421 2234444
Q ss_pred --HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHHH
Q 014757 141 --AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANEI 215 (419)
Q Consensus 141 --a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e~ 215 (419)
.+..+|+||+|||+..++++++++.+.+.++++||+++++.... .....+.+.+ .|.+ +.+..|+..+.
T Consensus 54 ~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~g~ivid~st~~~~~---t~~~~~~~~~-~g~~~vda~vsGg~~~a~-- 127 (298)
T TIGR00872 54 SQRLSAPRVVWVMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYKD---SLRRYKLLKE-KGIHLLDCGTSGGVWGRE-- 127 (298)
T ss_pred HhhcCCCCEEEEEcCchHHHHHHHHHHhhCCCCCEEEECCCCCccc---HHHHHHHHHh-cCCeEEecCCCCCHHHHh--
Confidence 34568999999999999999999999999999999998865432 2222233332 1332 23444443333
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCc---EEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHH
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYF---MVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGL 292 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~---~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~ 292 (419)
.| + .++.++ +.+.+++++++|+..+- .+.+..+.-.....|. .+|........++
T Consensus 128 -~G-~--~~~~gG-~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~-----------------~~n~l~~~~~~~~ 185 (298)
T TIGR00872 128 -RG-Y--CFMIGG-DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKM-----------------VHNGIEYGMMAAI 185 (298)
T ss_pred -cC-C--eeeeCC-CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHH-----------------HHHHHHHHHHHHH
Confidence 34 2 344555 78889999999886653 2444454422233333 3455556678899
Q ss_pred HHHHHHHHHhcCCCCccchhcccCCcceeeccc-CcccHHH-HHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHH
Q 014757 293 REMRAFSKLLFSSVKDSTFFESCGVADLITTCL-GGRNRKV-AEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 370 (419)
Q Consensus 293 ~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~-~~rn~~~-g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~ 370 (419)
.|...++++.|.+++++++.+.-.- .|. .+.-... ...+.+ . ..+..+... .....+.+.++..
T Consensus 186 aE~~~l~~~~g~~ld~~~~~~i~~~-----g~~~~s~~l~~~~~~~~~-~--~~~~~~~~~------~~~~~~~r~~v~~ 251 (298)
T TIGR00872 186 AEGFEILRNSQFDFDIPEVARVWRR-----GSVIRSWLLDLTAIAFRE-S--PDLAEFSGR------VSDSGEGRWTVIA 251 (298)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHcC-----CchhHhHHHHHHHHHHhc-C--CcHHHHHHH------HHhhccHHHHHHH
Confidence 9999999998655788877654111 111 1111111 222222 2 122222211 1112344678889
Q ss_pred HHHcCCCcCCcHHHHHH--HHHhCC--CCHHHHHHHHhcCC
Q 014757 371 LSHRGWLELFPLFATVH--EICVGH--LPPSAIVEYSERKP 407 (419)
Q Consensus 371 a~~~gv~~~~P~~~~~~--~~l~~~--~~~~~~~~~~~~~~ 407 (419)
|.+.|+ ++|.+.... ...... .-|..+++-.|+++
T Consensus 252 a~~~g~--p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~f 290 (298)
T TIGR00872 252 AIDLGV--PAPVIATSLQSRFASRDLDDFANKVLAALRKEF 290 (298)
T ss_pred HHHhCC--CHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhh
Confidence 999999 999997733 222232 44788888888764
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.1e-17 Score=164.12 Aligned_cols=278 Identities=9% Similarity=0.053 Sum_probs=184.8
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-c--CCCeEec
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-L--GKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-l--~~~i~~~ 135 (419)
..+|||+|||+|.||..+|..|++ | ++|++||+++++ ++.+++ |..+.+.++.. + ...+.++
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la~-~-------~~V~g~D~~~~~------ve~l~~-G~~~~~e~~~~~l~~~g~l~~t 68 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFGK-S-------RQVVGFDVNKKR------ILELKN-GVDVNLETTEEELREARYLKFT 68 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHhc-C-------CEEEEEeCCHHH------HHHHHC-cCCCCCCCCHHHHHhhCCeeEE
Confidence 345899999999999999999887 6 899999999887 788884 54332222211 1 1234566
Q ss_pred CCHHHHhcCCCEEEEccCcc----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcc-cHHHHHHhHhC----
Q 014757 136 PDLENAVKDANMLVFVTPHQ----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPC-MISTLISEQLG---- 200 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~-~~~~~i~~~~g---- 200 (419)
++.+ ++.+||++|+|||+. ++..+.+.|.+.++++++||..++ +.+. +.+ .....+.+..|
T Consensus 69 ~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST-v~pg--tt~~~~~~~l~~~~g~~~~ 144 (425)
T PRK15182 69 SEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST-VYPG--CTEEECVPILARMSGMTFN 144 (425)
T ss_pred eCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC-CCCc--chHHHHHHHHHhccCCCcC
Confidence 6665 588999999999963 455556788899999999888765 5543 222 23344443223
Q ss_pred CceEEEeCcchHHHHH----hcCceeEEEeecCCHHHHHHHHHHhCCCC-cEEEEcCcHHHHHHHHHHHHHHHHHHHhhh
Q 014757 201 VSCCVLMGANIANEIA----VEKFSEATVGYRDNREIAEKWVQLFSTPY-FMVTAVQDVEGVELCGTLKNVVAIAAGFVD 275 (419)
Q Consensus 201 ~~~~v~~gp~~a~e~~----~g~~~~~~~~~~~~~~~~~~l~~ll~~~g-~~~~~~~di~~~e~~~al~Ni~a~~~g~~~ 275 (419)
..+.+...|....+.. .+.+.. ++++. +++..+.+.++++... .......++...|..|.+.|
T Consensus 145 ~~~~~~~~PE~v~~G~a~~~~~~~~r-iv~G~-~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N---------- 212 (425)
T PRK15182 145 QDFYVGYSPERINPGDKKHRLTNIKK-ITSGS-TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIEN---------- 212 (425)
T ss_pred CCeeEeeCCCcCCCCcccccccCCCe-EEECC-CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHH----------
Confidence 2344444554432110 123333 34444 6777778888887542 12344566777777665544
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcC
Q 014757 276 GLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQG 355 (419)
Q Consensus 276 ~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g 355 (419)
.+.++....++|+..+|+++ |+|.+++.+.++.... ...+..|. ++ | .++
T Consensus 213 -------~~~av~Ia~~NE~a~lae~~--GiD~~~v~~a~~~~~~------~~~~~pG~-vG--G--~Cl---------- 262 (425)
T PRK15182 213 -------TQRDLNIALVNELAIIFNRL--NIDTEAVLRAAGSKWN------FLPFRPGL-VG--G--HCI---------- 262 (425)
T ss_pred -------HHHHHHHHHHHHHHHHHHHh--CcCHHHHHHHhcCCCC------cccCCCCc-cc--c--ccc----------
Confidence 55667788999999999999 4898888776443311 11122344 43 3 454
Q ss_pred CeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 356 QKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 356 ~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
.+|..++...++++|+ .+++.+++.++ ++..|..+++.+.+.
T Consensus 263 -----pkD~~~L~~~a~~~g~--~~~l~~~a~~i--N~~~~~~v~~~~~~~ 304 (425)
T PRK15182 263 -----GVDPYYLTHKSQGIGY--YPEIILAGRRL--NDNMGNYVSEQLIKA 304 (425)
T ss_pred -----cccHHHHHHHHHhcCC--CcHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4577788999999999 89999999999 556888888888764
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=168.64 Aligned_cols=263 Identities=16% Similarity=0.068 Sum_probs=168.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|++|+|||+|.||++||..|+++| ++|++|+|++++ ++.+.+.+.+. + ..+..++++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G-------~~V~v~dr~~~~------~~~l~~~~~~~----g----~~i~~~~s~~e 59 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRG-------FKISVYNRTYEK------TEEFVKKAKEG----N----TRVKGYHTLEE 59 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCC-------CeEEEEeCCHHH------HHHHHHhhhhc----C----CcceecCCHHH
Confidence 568999999999999999999999 999999999876 66666532110 0 02345678888
Q ss_pred Hhc---CCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHH
Q 014757 141 AVK---DANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIAN 213 (419)
Q Consensus 141 a~~---~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~ 213 (419)
++. ++|+||+++++ ..++++++++.+.+.++++||+++|+.... + ....+.+.+. |.+ +.+.+|+..|.
T Consensus 60 ~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~d--t-~~r~~~l~~~-Gi~fldapVSGG~~gA~ 135 (470)
T PTZ00142 60 LVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLN--T-ERRIKRCEEK-GILYLGMGVSGGEEGAR 135 (470)
T ss_pred HHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHH--H-HHHHHHHHHc-CCeEEcCCCCCCHHHHh
Confidence 775 48999999775 789999999999999999999999976532 1 2222333322 432 45566665554
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE------EEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM------VTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAI 287 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~------~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l 287 (419)
.| + .++.++ +.+..++++++|+..+-+ +.+.++. |....+|+.+|.....
T Consensus 136 ---~G-~--~lm~GG-~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~-----------------GaGh~vKmvhN~ie~~ 191 (470)
T PTZ00142 136 ---YG-P--SLMPGG-NKEAYDHVKDILEKCSAKVGDSPCVTYVGPG-----------------SSGHYVKMVHNGIEYG 191 (470)
T ss_pred ---cC-C--EEEEeC-CHHHHHHHHHHHHHHhhhcCCCCeEEEECCC-----------------CHHHHHHHHhHHHHHH
Confidence 34 2 355555 789999999999886655 4444443 2223334455666667
Q ss_pred HHHHHHHHHHHHH-HhcCCCCccchhcccC-CcceeecccCcccHHH-HHHhhhc---cCCCCHHHHHHHHhcCCeeehH
Q 014757 288 MRIGLREMRAFSK-LLFSSVKDSTFFESCG-VADLITTCLGGRNRKV-AEAFAKN---EGKRSFDDLEAEMLQGQKLQGV 361 (419)
Q Consensus 288 ~~~~~~E~~~la~-a~g~g~~~~~~~~~~~-~~d~~~t~~~~rn~~~-g~~l~~~---g~~~~~~~~~~~~~~g~~~Eg~ 361 (419)
+.+++.|+..+++ +. |++++++.+... +. .....+.-... +.-+.++ |++..++.+... .+++-+|.
T Consensus 192 ~m~~iaEa~~l~~~~~--gl~~~~l~~v~~~w~---~g~~~S~l~ei~~~~~~~~d~~~~~~~l~~i~d~--~~~~gtg~ 264 (470)
T PTZ00142 192 DMQLISESYKLMKHIL--GMSNEELSEVFNKWN---EGILNSYLIEITAKILAKKDDLGEEHLVDKILDI--AGSKGTGK 264 (470)
T ss_pred HHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHc---CCCccCHHHHHHHHHhhcccccCCCcchhhhcCc--ccCCchHH
Confidence 8899999999998 56 588887765310 00 00011111111 2222221 101234443322 35566777
Q ss_pred HHHHHHHHHHHHcCCCcCCcHHHH
Q 014757 362 STAREVYEVLSHRGWLELFPLFAT 385 (419)
Q Consensus 362 ~~~~~v~~~a~~~gv~~~~P~~~~ 385 (419)
+++. .|-++|+ +.|++..
T Consensus 265 wt~~----~a~~~~v--~~p~i~~ 282 (470)
T PTZ00142 265 WTVQ----EALERGI--PVPTMAA 282 (470)
T ss_pred hHHH----HHHHcCC--CchHHHH
Confidence 7744 4446788 9998865
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=162.06 Aligned_cols=274 Identities=12% Similarity=0.108 Sum_probs=178.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-c------CCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-L------GKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-l------~~~ 131 (419)
|.+|||+|||+|.||.++|..|+++| ++|++||+++++ ++.++... .+.+.++.. + ...
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G-------~~V~~~D~~~~~------v~~l~~g~-~~~~e~~l~~~l~~~~~~g~ 66 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQ-------KQVIGVDINQHA------VDTINRGE-IHIVEPDLDMVVKTAVEGGY 66 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCC-------CEEEEEeCCHHH------HHHHHCCC-CCcCCCCHHHHHHHHhhcCc
Confidence 45789999999999999999999999 999999999877 67776533 222222221 0 112
Q ss_pred eEecCCHHHHhcCCCEEEEccCc----------chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh-C
Q 014757 132 VVADPDLENAVKDANMLVFVTPH----------QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL-G 200 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~----------~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~-g 200 (419)
..++++ ..++|+||+|||+ ..+.++++.+.++++++++||..++ +++. +.+.+...+.+.. +
T Consensus 67 l~~~~~----~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST-v~pg--tt~~~~~~l~~~~~~ 139 (415)
T PRK11064 67 LRATTT----PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST-SPVG--ATEQMAEWLAEARPD 139 (415)
T ss_pred eeeecc----cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC-CCCC--HHHHHHHHHHHhccC
Confidence 334433 3479999999997 4888888999999999999988764 4432 2344444444321 0
Q ss_pred ----------CceEEEeCcchHHH---H-HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHH
Q 014757 201 ----------VSCCVLMGANIANE---I-AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNV 266 (419)
Q Consensus 201 ----------~~~~v~~gp~~a~e---~-~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni 266 (419)
..+.+...|....+ . ..+.+.. ++++. +.+..++++++|+..+-.+....++...|..|+..|
T Consensus 140 ~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~-vvgG~-~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N- 216 (415)
T PRK11064 140 LTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDR-VIGGM-TPVCSARASELYKIFLEGECVVTNSRTAEMCKLTEN- 216 (415)
T ss_pred CcccccccCCCCeEEEECCCccCCCChhhhhcCCCE-EEEeC-CHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHH-
Confidence 12445666644321 0 1233443 44665 788899999999876544445567777777675544
Q ss_pred HHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHH
Q 014757 267 VAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFD 346 (419)
Q Consensus 267 ~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~ 346 (419)
...+.....++|+..+|+++ |+|++.+.+.++...-+ .....|.-++ | .++
T Consensus 217 ----------------~~~a~~ia~~nE~~~lae~~--GiD~~~v~~~~~~~~ri------~~l~pG~G~G--G--~Cl- 267 (415)
T PRK11064 217 ----------------SFRDVNIAFANELSLICADQ--GINVWELIRLANRHPRV------NILQPGPGVG--G--HCI- 267 (415)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHhccCCCc------ccCCCCCCCC--C--ccc-
Confidence 45567788999999999999 48988887765543211 0111232222 2 453
Q ss_pred HHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 347 DLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 347 ~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
.+|..++ +.+.+. ..++.+++.++ ++..|..+++.+.+.
T Consensus 268 --------------pkD~~~L---~~~~~~--~~~l~~~a~~~--N~~~~~~v~~~~~~~ 306 (415)
T PRK11064 268 --------------AVDPWFI---VAQNPQ--QARLIRTAREV--NDGKPHWVIDQVKAA 306 (415)
T ss_pred --------------cccHHHH---HHhcCC--ccHHHHHHHHH--HHHhHHHHHHHHHHH
Confidence 2344444 334565 78889988888 555777777776653
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-16 Score=160.60 Aligned_cols=285 Identities=16% Similarity=0.192 Sum_probs=191.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-c-----CCCeEe
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-L-----GKNVVA 134 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-l-----~~~i~~ 134 (419)
||||+|||+|.+|..+|..|+++|+ .++|+++|.++++ ++.+++.+... +.++.. + ..++.+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~-----g~~V~gvD~~~~~------v~~l~~g~~~~-~e~gl~ell~~~~~~~l~~ 68 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCP-----DIEVVVVDISVPR------IDAWNSDQLPI-YEPGLDEVVKQCRGKNLFF 68 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-----CCeEEEEECCHHH------HHHHHcCCCcc-CCCCHHHHHHHhhcCCEEE
Confidence 6899999999999999999999851 1779999999887 88888755322 223321 1 224788
Q ss_pred cCCHHHHhcCCCEEEEccCc--c-------------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh
Q 014757 135 DPDLENAVKDANMLVFVTPH--Q-------------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL 199 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~--~-------------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~ 199 (419)
+++.++++.++|++|+|||+ . .++++++.|.++++++++||.-+. +.+. +.+.+.+.+.+..
T Consensus 69 t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST-vp~G--tt~~~~~~l~~~~ 145 (473)
T PLN02353 69 STDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVK--TAEAIEKILTHNS 145 (473)
T ss_pred EcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC-CCCC--hHHHHHHHHHhhC
Confidence 89988789999999999963 1 688889999999998888775543 3332 2334444444422
Q ss_pred -CCceEEEeCcchHHHHH----hcCceeEEEeecCC---HHHHHHHHHHhCCCC-cEEEEcCcHHHHHHHHHHHHHHHHH
Q 014757 200 -GVSCCVLMGANIANEIA----VEKFSEATVGYRDN---REIAEKWVQLFSTPY-FMVTAVQDVEGVELCGTLKNVVAIA 270 (419)
Q Consensus 200 -g~~~~v~~gp~~a~e~~----~g~~~~~~~~~~~~---~~~~~~l~~ll~~~g-~~~~~~~di~~~e~~~al~Ni~a~~ 270 (419)
|..+.+.+.|.+..+.. .-.+..+++|+..+ .+..+++.++++..- -......++..+|+.|...|
T Consensus 146 ~g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN----- 220 (473)
T PLN02353 146 KGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAAN----- 220 (473)
T ss_pred CCCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHH-----
Confidence 34567778887654311 12344556676512 335677888877542 12334578888888886655
Q ss_pred HHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHH
Q 014757 271 AGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEA 350 (419)
Q Consensus 271 ~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~ 350 (419)
...++-...++|+.++|+++| +|..++.+.++....+ +......|..++ | .++
T Consensus 221 ------------~~ra~~Iaf~NEla~lce~~g--iD~~eV~~~~~~d~ri----g~~~l~PG~G~G--G--~Cl----- 273 (473)
T PLN02353 221 ------------AFLAQRISSVNAMSALCEATG--ADVSQVSHAVGKDSRI----GPKFLNASVGFG--G--SCF----- 273 (473)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHhCCCCcC----CCCCCCCCCCCC--C--cch-----
Confidence 445666788999999999994 8887777655444221 001111222222 2 454
Q ss_pred HHhcCCeeehHHHHHHHHHHHHHcCCCcC--CcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 351 EMLQGQKLQGVSTAREVYEVLSHRGWLEL--FPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 351 ~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~--~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
.+|..++...++++|+ + .++.+.+.++ ++..|..+++.+...
T Consensus 274 ----------pkD~~~L~~~a~~~g~--~~~~~l~~~~~~i--N~~~~~~vv~~~~~~ 317 (473)
T PLN02353 274 ----------QKDILNLVYICECNGL--PEVAEYWKQVIKM--NDYQKSRFVNRVVSS 317 (473)
T ss_pred ----------hhhHHHHHHHHHHcCC--chHHHHHHHHHHH--HHhhHHHHHHHHHHH
Confidence 4677888999999998 6 7788888877 455778888887764
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-16 Score=155.28 Aligned_cols=270 Identities=16% Similarity=0.145 Sum_probs=171.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-----cCCCeEecC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-----LGKNVVADP 136 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-----l~~~i~~~~ 136 (419)
|||+|||+|.||..+|..|+. | |+|++||+++++ ++.+++ |..+.+.++.. -...+..+.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G-------~~VigvD~d~~k------v~~l~~-g~~~~~e~~l~~~l~~~~~~l~~t~ 65 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N-------HEVVALDILPSR------VAMLND-RISPIVDKEIQQFLQSDKIHFNATL 65 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C-------CcEEEEECCHHH------HHHHHc-CCCCCCCcCHHHHHHhCCCcEEEec
Confidence 689999999999999988885 8 999999999877 677776 33222323221 012344556
Q ss_pred CHHHHhcCCCEEEEccCcc-----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEE
Q 014757 137 DLENAVKDANMLVFVTPHQ-----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCV 205 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v 205 (419)
++++++.++|+||+|||+. +++++++.+.+ ++++++||..++ +.+. +.+.+.+.+.+ ..+
T Consensus 66 ~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~ST-v~pg--tt~~l~~~~~~-----~~v 136 (388)
T PRK15057 66 DKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKST-VPVG--FTAAMHKKYRT-----ENI 136 (388)
T ss_pred chhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeee-cCCc--hHHHHHHHhhc-----CcE
Confidence 6777788999999999964 67788888877 678888887764 4432 22222222221 234
Q ss_pred EeCcchHHHHH----hcCceeEEEeecCCHHHHHHHHHHhCCC--CcEEE-EcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Q 014757 206 LMGANIANEIA----VEKFSEATVGYRDNREIAEKWVQLFSTP--YFMVT-AVQDVEGVELCGTLKNVVAIAAGFVDGLE 278 (419)
Q Consensus 206 ~~gp~~a~e~~----~g~~~~~~~~~~~~~~~~~~l~~ll~~~--g~~~~-~~~di~~~e~~~al~Ni~a~~~g~~~~~~ 278 (419)
..+|.++.+.. .-.+..++.|+ +++.++++.++|... +-.+. +..++...|..|...|
T Consensus 137 ~~~PE~l~~G~a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N------------- 201 (388)
T PRK15057 137 IFSPEFLREGKALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFAN------------- 201 (388)
T ss_pred EECcccccCCcccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHH-------------
Confidence 45676654210 01233344544 456677788777431 11122 3567777777775544
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCee
Q 014757 279 MGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKL 358 (419)
Q Consensus 279 ~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~ 358 (419)
.+.+.....++|+..+|+++ |+|.+.+.+..+....+. ....+.|.-++ | .++
T Consensus 202 ----~~~a~~Ia~~NE~a~lae~~--GiD~~eV~~a~~~d~ri~----~~~l~pG~G~G--G--~Cl------------- 254 (388)
T PRK15057 202 ----TYLAMRVAYFNELDSYAESL--GLNTRQIIEGVCLDPRIG----NHYNNPSFGYG--G--YCL------------- 254 (388)
T ss_pred ----HHHHHHHHHHHHHHHHHHHh--CcCHHHHHHHhcCCCCCC----CccCCCCCCCC--C--cCh-------------
Confidence 55667788999999999999 489888877655442211 11111233232 3 564
Q ss_pred ehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014757 359 QGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 359 Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
.+|..++...+ .++ ++|+.+++.++ ++..|+.+++.+.+
T Consensus 255 --pkD~~~L~~~~--~~~--~~~l~~~~~~~--N~~~~~~~~~~~~~ 293 (388)
T PRK15057 255 --PKDTKQLLANY--QSV--PNNLISAIVDA--NRTRKDFIADAILS 293 (388)
T ss_pred --hhhHHHHHHhc--cCC--CcHHHHHHHHH--HHHhHHHHHHHHHH
Confidence 34555554444 566 78999999998 55688888888876
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-15 Score=145.68 Aligned_cols=258 Identities=13% Similarity=0.108 Sum_probs=160.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEE-ecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMW-VFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~-~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|+||++|+..|.++|+..+ .+|++| +|++++ .+.+.+.| +..++++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~---~~i~v~~~r~~~~------~~~~~~~g--------------~~~~~~~~e 57 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPP---SRISTADDSNPAR------RDVFQSLG--------------VKTAASNTE 57 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCc---ceEEEEeCCCHHH------HHHHHHcC--------------CEEeCChHH
Confidence 789999999999999999999981000 288888 887655 45554433 345567777
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCc
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKF 220 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~ 220 (419)
++.++|+||+|+|+++++++++++.+.+.++++||++++|+.. +.+.+..+....+...|+.+..++.+.
T Consensus 58 ~~~~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~---------~~l~~~~~~~~vvr~mP~~~~~~~~~~- 127 (266)
T PLN02688 58 VVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITL---------ADLQEWAGGRRVVRVMPNTPCLVGEAA- 127 (266)
T ss_pred HHhcCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcH---------HHHHHHcCCCCEEEECCCcHHHHhCce-
Confidence 7889999999999999999999998888889999999888754 344444443223445777776655443
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHH
Q 014757 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSK 300 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~ 300 (419)
+.++.+...+++..++++++|+..|. +++.++-. .+.+....|. .+.....+..++.|. +.
T Consensus 128 ~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e~~--------~d~~~~~~g~-------g~a~~~~~~~a~~ea---~~ 188 (266)
T PLN02688 128 SVMSLGPAATADDRDLVATLFGAVGK-IWVVDEKL--------LDAVTGLSGS-------GPAYIFLAIEALADG---GV 188 (266)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHH--------cchhHhhhcC-------HHHHHHHHHHHHHHH---HH
Confidence 33444433367889999999999997 54443211 1111000111 122234566677777 77
Q ss_pred HhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCC
Q 014757 301 LLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELF 380 (419)
Q Consensus 301 a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~ 380 (419)
+. |++++.+.+.. .... ....+.+.+.+ .+++++.+.+ .+-+- .....++..++.|+ .-
T Consensus 189 ~~--Gl~~~~a~~~~------~~~~----~gs~~l~~~~~--~~~~~l~~~v----~spgG-~t~~~l~~l~~~g~--~~ 247 (266)
T PLN02688 189 AA--GLPRDVALSLA------AQTV----LGAAKMVLETG--KHPGQLKDMV----TSPGG-TTIAGVHELEKGGF--RA 247 (266)
T ss_pred Hc--CCCHHHHHHHH------HHHH----HHHHHHHHhcC--CCHHHHHHhC----CCCch-HHHHHHHHHHHCCh--HH
Confidence 77 58888776531 0000 01122222212 3455553332 11111 22334666677888 77
Q ss_pred cHHHHHHHHHhC
Q 014757 381 PLFATVHEICVG 392 (419)
Q Consensus 381 P~~~~~~~~l~~ 392 (419)
.+.+++.+..+.
T Consensus 248 ~~~~a~~~~~~r 259 (266)
T PLN02688 248 ALMNAVVAAAKR 259 (266)
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-17 Score=144.00 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=109.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|.||+.||.+|+++| ++|++|||++++ .+.+.+.| ++...+++|
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g-------~~v~~~d~~~~~------~~~~~~~g--------------~~~~~s~~e 53 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG-------YEVTVYDRSPEK------AEALAEAG--------------AEVADSPAE 53 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT-------TEEEEEESSHHH------HHHHHHTT--------------EEEESSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC-------CeEEeeccchhh------hhhhHHhh--------------hhhhhhhhh
Confidence 789999999999999999999999 999999999766 66776644 567789999
Q ss_pred HhcCCCEEEEccCc-chHHHHHHH--HhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHHH
Q 014757 141 AVKDANMLVFVTPH-QFMEGICKR--LVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIANE 214 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl~~--l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~e 214 (419)
+++.+|+||+|+|+ .++++++.+ +.+.+.+++++|++++ +.++ +...+.+.+.+ .|. ++++..||..+.
T Consensus 54 ~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT-~~p~--~~~~~~~~~~~-~g~~~vdapV~Gg~~~a~- 128 (163)
T PF03446_consen 54 AAEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMST-ISPE--TSRELAERLAA-KGVRYVDAPVSGGPPGAE- 128 (163)
T ss_dssp HHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---HH--HHHHHHHHHHH-TTEEEEEEEEESHHHHHH-
T ss_pred HhhcccceEeecccchhhhhhhhhhHHhhccccceEEEecCC-cchh--hhhhhhhhhhh-ccceeeeeeeeccccccc-
Confidence 99999999999998 789999988 9999999999999986 4332 12233333332 242 345555565444
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEE
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVT 249 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~ 249 (419)
.|. ..++.++ +++.+++++++|+..+.+++
T Consensus 129 --~g~--l~~~~gG-~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 129 --EGT--LTIMVGG-DEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp --HTT--EEEEEES--HHHHHHHHHHHHHHEEEEE
T ss_pred --ccc--eEEEccC-CHHHHHHHHHHHHHHhCCce
Confidence 354 3355556 78999999999988776665
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-15 Score=142.18 Aligned_cols=159 Identities=8% Similarity=0.119 Sum_probs=123.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|+||.+|+..|.++|+..+ ++|++|+|++++ .+.+.+ .| +..+++.++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~---~~I~v~~r~~~~------~~~l~~~~g--------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSP---DQIICSDLNVSN------LKNASDKYG--------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCC---ceEEEECCCHHH------HHHHHHhcC--------------cEEeCCcHH
Confidence 589999999999999999999883111 479999988655 444443 22 234566667
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHhcC
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEK 219 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~g~ 219 (419)
++.+||+||+|||+++++++++++.+.++++++|||+..|+.. +.+++.++.. -.++..|+.+..++.|.
T Consensus 60 ~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i---------~~l~~~l~~~~~vvR~MPN~~~~vg~g~ 130 (272)
T PRK12491 60 VANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSI---------KSTENEFDRKLKVIRVMPNTPVLVGEGM 130 (272)
T ss_pred HHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcH---------HHHHHhcCCCCcEEEECCChHHHHcCce
Confidence 7789999999999999999999999988888999999999975 4566666532 47889999999888774
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
+.+..+...+.+..+.+.++|+..|..++..++
T Consensus 131 -t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~ 163 (272)
T PRK12491 131 -SALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEK 163 (272)
T ss_pred -EEEEeCCCCCHHHHHHHHHHHHcCCCEEEEcHH
Confidence 444444444567888999999999988777554
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-14 Score=138.20 Aligned_cols=162 Identities=13% Similarity=0.160 Sum_probs=117.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|+||++++..|.++|...+ ++|++|+|+++. .+.+.+.. .++..+.+.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~---~~v~v~~r~~~~------~~~~~~~~------------~g~~~~~~~~~~ 59 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKP---SQLTITNRTPAK------AYHIKERY------------PGIHVAKTIEEV 59 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCc---ceEEEECCCHHH------HHHHHHHc------------CCeEEECCHHHH
Confidence 689999999999999999999982111 379999998754 34443311 023456677777
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCce
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFS 221 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~~ 221 (419)
+.++|+||+|||++++.++++++.+++.++++|+++++|+.. +.+.+.++.+ .+..-|+.+.....|. +
T Consensus 60 ~~~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~---------~~L~~~~~~~-~~r~~p~~~~~~~~G~-t 128 (273)
T PRK07680 60 ISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISV---------EQLETLVPCQ-VARIIPSITNRALSGA-S 128 (273)
T ss_pred HHhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH---------HHHHHHcCCC-EEEECCChHHHHhhcc-E
Confidence 789999999999999999999999988889999999998853 4455555432 3444566655444554 3
Q ss_pred eEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHH
Q 014757 222 EATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVE 255 (419)
Q Consensus 222 ~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~ 255 (419)
.+..+...+.+..+.+.++|+..|..+++.+++.
T Consensus 129 ~~~~g~~~~~~~~~~~~~ll~~~G~~~~i~e~~~ 162 (273)
T PRK07680 129 LFTFGSRCSEEDQQKLERLFSNISTPLVIEEDIT 162 (273)
T ss_pred EEeeCCCCCHHHHHHHHHHHHcCCCEEEEChHhc
Confidence 3334433356777899999999998888877643
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-14 Score=136.04 Aligned_cols=164 Identities=12% Similarity=0.112 Sum_probs=117.8
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|..|||+|||+|+||.+++..|.++|...+ ++|++|+|+++. ..+.+...- +++.+.++
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~---~~v~v~~r~~~~-----~~~~l~~~~-------------g~~~~~~~ 59 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKG---EQITVSNRSNET-----RLQELHQKY-------------GVKGTHNK 59 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCc---ceEEEECCCCHH-----HHHHHHHhc-------------CceEeCCH
Confidence 345799999999999999999999872111 689999987532 034443320 13455677
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHh
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAV 217 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~ 217 (419)
.+++.++|+||+|||++++.++++++.+.+.++++||++.+|+.+ +.+++.++.. ..+...|+.+.....
T Consensus 60 ~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~---------~~l~~~~~~~~~v~r~mPn~~~~~~~ 130 (279)
T PRK07679 60 KELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVST---------HSIRNLLQKDVPIIRAMPNTSAAILK 130 (279)
T ss_pred HHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH---------HHHHHHcCCCCeEEEECCCHHHHHhc
Confidence 777889999999999999999999999888889999999999875 3344444433 355666877665554
Q ss_pred cCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 218 EKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 218 g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
+ .+.++.+...+.+..+.++++|+..|-.+++.++
T Consensus 131 ~-~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~ 165 (279)
T PRK07679 131 S-ATAISPSKHATAEHIQTAKALFETIGLVSVVEEE 165 (279)
T ss_pred c-cEEEeeCCCCCHHHHHHHHHHHHhCCcEEEeCHH
Confidence 4 3333332223467889999999999987766544
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=137.67 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=125.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|+||.+++..|.++|...+ .+|++.+|++++ .+.+.+.- ++..+++.++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~---~~I~v~~~~~e~------~~~l~~~~-------------g~~~~~~~~~ 58 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPP---EEIIVTNRSEEK------RAALAAEY-------------GVVTTTDNQE 58 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCc---ceEEEeCCCHHH------HHHHHHHc-------------CCcccCcHHH
Confidence 5899999999999999999999982111 588999988765 33333311 1122566677
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCc
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKF 220 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~ 220 (419)
++.++|+||+|||++.+++++.++.+ +.++++|||+..|+.. +.+++.+|..-.+...|+.+..++.|.
T Consensus 59 ~~~~advv~LavKPq~~~~vl~~l~~-~~~~~lvISiaAGv~~---------~~l~~~l~~~~vvR~MPNt~a~vg~g~- 127 (266)
T COG0345 59 AVEEADVVFLAVKPQDLEEVLSKLKP-LTKDKLVISIAAGVSI---------ETLERLLGGLRVVRVMPNTPALVGAGV- 127 (266)
T ss_pred HHhhCCEEEEEeChHhHHHHHHHhhc-ccCCCEEEEEeCCCCH---------HHHHHHcCCCceEEeCCChHHHHcCcc-
Confidence 78899999999999999999999998 7789999999999975 466777773347788999999888885
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014757 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
+.+..+...+.+..+.+.++|+..|-.+++.++.
T Consensus 128 t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~ 161 (266)
T COG0345 128 TAISANANVSEEDKAFVEALLSAVGKVVEVEESL 161 (266)
T ss_pred eeeecCccCCHHHHHHHHHHHHhcCCeEEechHH
Confidence 4344433346788889999999999888887654
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-14 Score=134.68 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=120.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC-CCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE-ETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~-~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+|..|||+|||+|.||.+++..|.++|... ..++++++|+ +++ .+.+.+.. ++..++
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~---~~~i~~~~~~~~~~------~~~~~~~~-------------~~~~~~ 58 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEY---IEEIIVSNRSNVEK------LDQLQARY-------------NVSTTT 58 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCC---cCeEEEECCCCHHH------HHHHHHHc-------------CcEEeC
Confidence 355689999999999999999999886210 0136677764 333 34443311 134556
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHH
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEI 215 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~ 215 (419)
+.++++.++|+||+|||++..+++++++.+.++ +++||++++|+.. +.+++.++. ...++.+|+++.++
T Consensus 59 ~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~-~~~vis~~~gi~~---------~~l~~~~~~~~~v~r~~Pn~a~~v 128 (245)
T PRK07634 59 DWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGP---------SYLEERLPKGTPVAWIMPNTAAEI 128 (245)
T ss_pred ChHHHHhcCCEEEEecCHHHHHHHHHHHHhhcc-CCEEEEECCCCCH---------HHHHHHcCCCCeEEEECCcHHHHH
Confidence 777778899999999999999999999988775 6799999999875 356666653 34668999999999
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
+.+.+.. ......+++..+.++++|+..|..++..++
T Consensus 129 ~~g~~~~-~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~ 165 (245)
T PRK07634 129 GKSISLY-TMGQSVNETHKETLQLILKGIGTSQLCTEE 165 (245)
T ss_pred hcCCeEE-eeCCCCCHHHHHHHHHHHHhCCCEEEECHH
Confidence 8886543 333333788889999999999988876543
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=153.29 Aligned_cols=264 Identities=16% Similarity=0.059 Sum_probs=163.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
+|+|||+|.||.+||.+|+++| ++|++|+|++++ ++.+.+.+.+ + ..+....++++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-------~~V~v~drt~~~------~~~l~~~~~~-----g----~~~~~~~s~~e~v 58 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-------FTVSVYNRTPEK------TDEFLAEHAK-----G----KKIVGAYSIEEFV 58 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-------CeEEEEeCCHHH------HHHHHhhccC-----C----CCceecCCHHHHH
Confidence 4899999999999999999999 999999999876 5666553211 0 0123445666654
Q ss_pred ---cCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHHH
Q 014757 143 ---KDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANEI 215 (419)
Q Consensus 143 ---~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e~ 215 (419)
..+|+||+|+|+ ..++++++++.+.+.++++||+++|+.... .....+.+.+. |.. +.+..|+..|.
T Consensus 59 ~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~---t~~~~~~l~~~-gi~fvdapVsGG~~gA~-- 132 (467)
T TIGR00873 59 QSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPD---TERRYKELKAK-GILFVGSGVSGGEEGAR-- 132 (467)
T ss_pred hhcCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHH---HHHHHHHHHhc-CCEEEcCCCCCCHHHHh--
Confidence 468999999998 789999999999999999999998855432 11122223221 332 34555555444
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEE------EEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHH
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMV------TAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMR 289 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~------~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~ 289 (419)
.| + .++.++ +++.+++++++|+..+-++ .+.++. |....+|+.+|.....+.
T Consensus 133 -~G-~--~im~GG-~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~-----------------GsG~~vKmvhN~i~~~~m 190 (467)
T TIGR00873 133 -KG-P--SIMPGG-SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPD-----------------GAGHYVKMVHNGIEYGDM 190 (467)
T ss_pred -cC-C--cCCCCC-CHHHHHHHHHHHHHHhhhcCCCCceEEECCc-----------------CHHHHHHHHHHHHHHHHH
Confidence 34 2 344555 7899999999998765442 333332 223334455666667788
Q ss_pred HHHHHHHHHHH-HhcCCCCccchhcccC-CcceeecccCcccHHH-HHHhhhccCC---CCHHHHHHHHhcCCeeehHHH
Q 014757 290 IGLREMRAFSK-LLFSSVKDSTFFESCG-VADLITTCLGGRNRKV-AEAFAKNEGK---RSFDDLEAEMLQGQKLQGVST 363 (419)
Q Consensus 290 ~~~~E~~~la~-a~g~g~~~~~~~~~~~-~~d~~~t~~~~rn~~~-g~~l~~~g~~---~~~~~~~~~~~~g~~~Eg~~~ 363 (419)
+++.|+..+++ +. |++++++.+... |- .....+.-... +..+.+ .++ .-++.+... .++.-+|.++
T Consensus 191 ~~~aEa~~ll~~~~--g~~~~~l~~v~~~w~---~~~~~S~l~~~~~~~~~~-~d~~~~~~l~~i~~~--~~~~gtg~wt 262 (467)
T TIGR00873 191 QLICEAYDILKDGL--GLSNEEIAEVFTEWN---NGELDSYLIEITADILKK-KDEDGKPLVDKILDT--AGQKGTGKWT 262 (467)
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHhc---CCcccchHHHhHHHHHhc-cCCCCCccHHhhcCc--ccCccHHHHH
Confidence 99999999986 57 588877765320 00 01111211111 222322 110 113333222 3456677777
Q ss_pred HHHHHHHHHHcCCCcCCcHHHH-HHHHH
Q 014757 364 AREVYEVLSHRGWLELFPLFAT-VHEIC 390 (419)
Q Consensus 364 ~~~v~~~a~~~gv~~~~P~~~~-~~~~l 390 (419)
+. .|-++|+ +.|++.. +++.+
T Consensus 263 ~~----~a~~~~v--~~p~i~~av~~R~ 284 (467)
T TIGR00873 263 AI----SALDLGV--PVTLITESVFARY 284 (467)
T ss_pred HH----HHHHcCC--CchHHHHHHHHHh
Confidence 44 4446788 9998855 44444
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-14 Score=138.05 Aligned_cols=163 Identities=10% Similarity=0.090 Sum_probs=122.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|+||++++..|.++|... .++|.+|+|+++. . .+.+.... ..+..+.+.++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~---~~~V~~~~r~~~~----~-~~~l~~~~------------~~~~~~~~~~e 60 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVAT---PEEIILYSSSKNE----H-FNQLYDKY------------PTVELADNEAE 60 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCC---cccEEEEeCCcHH----H-HHHHHHHc------------CCeEEeCCHHH
Confidence 579999999999999999999987211 1689999986421 0 23333211 01334566767
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCc
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKF 220 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~ 220 (419)
++.++|+||+|+|++.+.++++++.+.+.++++||++++|+.. +.+++.++....++..|+.+..++.|.
T Consensus 61 ~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~---------~~l~~~~~~~~vvR~MPN~~~~~g~g~- 130 (277)
T PRK06928 61 IFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSL---------DDLLEITPGLQVSRLIPSLTSAVGVGT- 130 (277)
T ss_pred HHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH---------HHHHHHcCCCCEEEEeCccHHHHhhhc-
Confidence 7789999999999999999999999988888999999999975 355565654347788999998888874
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
+.+......+++..+.+.++|+..|..+++.++
T Consensus 131 t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~ 163 (277)
T PRK06928 131 SLVAHAETVNEANKSRLEETLSHFSHVMTIREE 163 (277)
T ss_pred EEEecCCCCCHHHHHHHHHHHHhCCCEEEEchh
Confidence 434443334677888999999999988877654
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-14 Score=140.40 Aligned_cols=274 Identities=14% Similarity=0.111 Sum_probs=180.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-------cCCCeEe
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-------LGKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-------l~~~i~~ 134 (419)
++|+|||+|.+|.++|..++++| ++|..+|.++++ ++.+++...... .++.. -...+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G-------~~ViG~DIn~~~------Vd~ln~G~~~i~-e~~~~~~v~~~v~~g~lra 75 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAG-------FKVIGVDINQKK------VDKLNRGESYIE-EPDLDEVVKEAVESGKLRA 75 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcC-------CceEeEeCCHHH------HHHHhCCcceee-cCcHHHHHHHHHhcCCceE
Confidence 89999999999999999999999 999999999887 888887433222 22211 1345889
Q ss_pred cCCHHHHhcCCCEEEEccCcc----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhH-hC---
Q 014757 135 DPDLENAVKDANMLVFVTPHQ----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQ-LG--- 200 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~-~g--- 200 (419)
|+|+++ +..||++|+|||.. .++++.+.|++.|++|.+||.-++ +.+. +.+.+...+.+. -|
T Consensus 76 Ttd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST-~~PG--TTe~v~~plle~~sgL~~ 151 (436)
T COG0677 76 TTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST-TPPG--TTEEVVKPLLEERSGLKF 151 (436)
T ss_pred ecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC-CCCC--cHHHHHHHHHhhcCCCcc
Confidence 999987 56999999999972 588888999999999999886654 3332 233333333333 22
Q ss_pred -CceEEEeCc-----chHH-HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHh
Q 014757 201 -VSCCVLMGA-----NIAN-EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGF 273 (419)
Q Consensus 201 -~~~~v~~gp-----~~a~-e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~ 273 (419)
.++.+-..| +... ++. ..+ =++|+. +....+..+.++++.--.+....+.+.+|++|++.|+
T Consensus 152 ~~Df~laysPERv~PG~~~~el~-~~~--kVIgG~-tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~------- 220 (436)
T COG0677 152 GEDFYLAYSPERVLPGNVLKELV-NNP--KVIGGV-TPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENT------- 220 (436)
T ss_pred cceeeEeeCccccCCCchhhhhh-cCC--ceeecC-CHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhh-------
Confidence 244444444 3332 222 111 155555 6777777777777765557777889999999987665
Q ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHh
Q 014757 274 VDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEML 353 (419)
Q Consensus 274 ~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~ 353 (419)
.+..-.+..+|+..+|+++| ++...+.+.+.....+ .-++.|.-++ | -++.
T Consensus 221 ----------fRdVNIALaNElali~~~~G--IdvwevIeaAnt~P~~------~~~~PGpGvG--G--HCIp------- 271 (436)
T COG0677 221 ----------FRDVNIALANELALICNAMG--IDVWEVIEAANTKPRV------NIFYPGPGVG--G--HCIP------- 271 (436)
T ss_pred ----------hhHHHHHHHHHHHHHHHHhC--CcHHHHHHHhccCCce------eecCCCCCCC--C--cccc-------
Confidence 34556788999999999995 7877776654332211 1122344333 2 2321
Q ss_pred cCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014757 354 QGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 354 ~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
-|-=++...|+++|. ++.+.++..++ ++..|..+++.+..
T Consensus 272 --------vDP~fl~~ka~~yg~--~~rlI~tAreI--N~~mP~~Vv~~~~~ 311 (436)
T COG0677 272 --------VDPYFLTWKAPEYGL--PARLIRTAREI--NDSMPRHVVDRVKE 311 (436)
T ss_pred --------cCchheeecccccCC--chHHHHHHHHH--hccCCHHHHHHHHH
Confidence 011144566677777 77777777776 55566666665553
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=132.94 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=114.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|.||+.++..|.++|.. .++|.+|+|+++. .+.+.+.. ++..+.+.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~----~~~v~v~~r~~~~------~~~~~~~~-------------g~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVP----AKDIIVSDPSPEK------RAALAEEY-------------GVRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCC----cceEEEEcCCHHH------HHHHHHhc-------------CCeecCChHH
Confidence 68999999999999999999998721 1579999998765 45555421 1234566667
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhcC
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVEK 219 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g~ 219 (419)
++.++|+||+|||+..++++++++.+.+ +++||++++|+.. +.+++.++. ...+..-|+++..+..+.
T Consensus 59 ~~~~advVil~v~~~~~~~v~~~l~~~~--~~~vvs~~~gi~~---------~~l~~~~~~~~~iv~~~P~~p~~~~~~~ 127 (267)
T PRK11880 59 AAQEADVVVLAVKPQVMEEVLSELKGQL--DKLVVSIAAGVTL---------ARLERLLGADLPVVRAMPNTPALVGAGM 127 (267)
T ss_pred HHhcCCEEEEEcCHHHHHHHHHHHHhhc--CCEEEEecCCCCH---------HHHHHhcCCCCcEEEecCCchHHHcCce
Confidence 7789999999999999999999998876 5799999999853 345555552 224456677776555442
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc
Q 014757 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAV 251 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~ 251 (419)
+.++.+...+.+..+.++++|+..|..+++.
T Consensus 128 -~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 128 -TALTANALVSAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred -EEEecCCCCCHHHHHHHHHHHHhCCeEEEEC
Confidence 3334443346788899999999999766665
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-13 Score=133.00 Aligned_cols=262 Identities=13% Similarity=0.055 Sum_probs=153.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHH-------HHhcCcCCccCCCCccCCCeE
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDV-------INRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~-------i~~~g~~~~~~~~~~l~~~i~ 133 (419)
+|||+|||+|.||+++|..|+++| ++|++|+|+++. .+...+. +.+.|... ......+..++.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G-------~~V~v~d~~~~~--~~~~~~~~~~~l~~l~~~g~~~-~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAG-------HEVRLWDADPAA--AAAAPAYIAGRLEDLAAFDLLD-GEAPDAVLARIR 71 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCC-------CeeEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCc-hhhHHHHhcCeE
Confidence 478999999999999999999999 999999998764 1111111 11222100 000012234567
Q ss_pred ecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcc
Q 014757 134 ADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGAN 210 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~ 210 (419)
.++++++++.++|+||.|+|+. ....++.++.+..++++++.+.+++... ..+.+.+..+ ..+...|-
T Consensus 72 ~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~---------~~la~~~~~~~~~~~~hp~ 142 (308)
T PRK06129 72 VTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA---------SAFTEHLAGRERCLVAHPI 142 (308)
T ss_pred EECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCH---------HHHHHhcCCcccEEEEecC
Confidence 7889988889999999999985 4666777787777767777666654332 2333333221 23333333
Q ss_pred hHHHHHhcCceeEEEee--cCCHHHHHHHHHHhCCCCcEEEEcC-cHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHH
Q 014757 211 IANEIAVEKFSEATVGY--RDNREIAEKWVQLFSTPYFMVTAVQ-DVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAI 287 (419)
Q Consensus 211 ~a~e~~~g~~~~~~~~~--~~~~~~~~~l~~ll~~~g~~~~~~~-di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l 287 (419)
..... .+ .+.+.+ ..+.+.++++.++++..|.++.... +..+. +. + .+
T Consensus 143 ~p~~~---~~-lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~-----i~----------------n----rl 193 (308)
T PRK06129 143 NPPYL---IP-VVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF-----VL----------------N----RL 193 (308)
T ss_pred CCccc---Cc-eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH-----HH----------------H----HH
Confidence 22110 01 122332 2378899999999999998766553 43221 11 1 13
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHH
Q 014757 288 MRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREV 367 (419)
Q Consensus 288 ~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v 367 (419)
....++|+..++++. +++++++......+ .+.+-..+|..... .. +... |...-..++.++.
T Consensus 194 ~~a~~~EA~~l~~~g--~~~~~~id~~~~~~------~g~~~~~~gp~~~~-d~-~~~~--------g~~~~~~k~~~l~ 255 (308)
T PRK06129 194 QGALLREAFRLVADG--VASVDDIDAVIRDG------LGLRWSFMGPFETI-DL-NAPG--------GVADYAQRYGPMY 255 (308)
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHhc------cCCCccCcCHHHHH-hc-cccc--------cHHHHHHHHHHHH
Confidence 457899999999998 48888876532111 11110001222111 10 1000 1111225677888
Q ss_pred HHHHHHcCCCcCCcHHHHHHHHH
Q 014757 368 YEVLSHRGWLELFPLFATVHEIC 390 (419)
Q Consensus 368 ~~~a~~~gv~~~~P~~~~~~~~l 390 (419)
.+++++.+. +.|+.+..++.+
T Consensus 256 ~~~~~~~~~--~~~~~~~~~~~~ 276 (308)
T PRK06129 256 RRMAAERGQ--PVPWDGELVARV 276 (308)
T ss_pred HhhccccCC--CchhhHHHHHHH
Confidence 888888887 888887766644
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=133.55 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=112.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||+++|..|.++|+ .++|++|+|+++. .+...+.|.. ....+++++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~-----~~~v~~~d~~~~~------~~~~~~~g~~-------------~~~~~~~~~ 56 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL-----ISKVYGYDHNELH------LKKALELGLV-------------DEIVSFEEL 56 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC-----CCEEEEEcCCHHH------HHHHHHCCCC-------------cccCCHHHH
Confidence 589999999999999999999982 1368888887654 4444443321 122355564
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce---EEE-----eCcchHH
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC---CVL-----MGANIAN 213 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~---~v~-----~gp~~a~ 213 (419)
. ++|+||+|||...+.+++.++.+ ++++++|+++.. . ...+.+.+.+..+..+ ..+ .||..+.
T Consensus 57 ~-~aD~Vilavp~~~~~~~~~~l~~-l~~~~iv~d~gs--~-----k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~ 127 (275)
T PRK08507 57 K-KCDVIFLAIPVDAIIEILPKLLD-IKENTTIIDLGS--T-----KAKIIESVPKHIRKNFIAAHPMAGTENSGPKAAI 127 (275)
T ss_pred h-cCCEEEEeCcHHHHHHHHHHHhc-cCCCCEEEECcc--c-----hHHHHHHHHHhcCCCEEecCCcCcCchhhHHhcc
Confidence 4 59999999999999999999999 888999987532 1 1223333433221111 111 2344332
Q ss_pred -HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHH
Q 014757 214 -EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNV 266 (419)
Q Consensus 214 -e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni 266 (419)
.+..|....++.....+.+..+++.++|+..|.++...+...+++..+++.|+
T Consensus 128 ~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~l 181 (275)
T PRK08507 128 KGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHL 181 (275)
T ss_pred HHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHH
Confidence 34456543233322235678899999999999888888777777766665554
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=125.94 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=114.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..|||+|||+|+||++++..|.+++...+ .++++++|+++. + + +....++.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~---~~i~~~~~~~~~---------~---~--------------~~~~~~~~ 52 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGK---ENIYYHTPSKKN---------T---P--------------FVYLQSNE 52 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCc---ceEEEECCChhc---------C---C--------------eEEeCChH
Confidence 34799999999999999999998873211 358888776432 0 1 12345666
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVE 218 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g 218 (419)
+++.++|+||+|+|+++++++++++.+++.+ +.||+..+|+.. +.+++.++. ...+...|+++..+..|
T Consensus 53 ~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~-~~iIS~~aGi~~---------~~l~~~~~~~~~vvr~mPn~p~~~g~g 122 (260)
T PTZ00431 53 ELAKTCDIIVLAVKPDLAGKVLLEIKPYLGS-KLLISICGGLNL---------KTLEEMVGVEAKIVRVMPNTPSLVGQG 122 (260)
T ss_pred HHHHhCCEEEEEeCHHHHHHHHHHHHhhccC-CEEEEEeCCccH---------HHHHHHcCCCCeEEEECCCchhHhcce
Confidence 6678899999999999999999999988764 678999999974 455665553 24668899999877665
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
. +.++.....+.+..+.+.++|+..|..+++.++
T Consensus 123 ~-t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~ 156 (260)
T PTZ00431 123 S-LVFCANNNVDSTDKKKVIDIFSACGIIQEIKEK 156 (260)
T ss_pred e-EEEEeCCCCCHHHHHHHHHHHHhCCcEEEEChH
Confidence 3 333333233567789999999999999888655
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=142.39 Aligned_cols=202 Identities=10% Similarity=0.011 Sum_probs=131.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc----CcCCccCCCCcc--CCCeE
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT----NENVKYLPGIKL--GKNVV 133 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~----g~~~~~~~~~~l--~~~i~ 133 (419)
.+|||+|||+|.||++||..|+++| ++|++||++++. .+.+.+. .....++..... ..+++
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G-------~~V~v~D~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~ 69 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAG-------IDVAVFDPHPEA------ERIIGEVLANAERAYAMLTDAPLPPEGRLT 69 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCC-------CeEEEEeCCHHH------HHHHHHHHHHHHHHHhhhccchhhhhhceE
Confidence 3579999999999999999999999 999999998765 2222110 000001111111 12366
Q ss_pred ecCCHHHHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcc
Q 014757 134 ADPDLENAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGAN 210 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~ 210 (419)
.++++++++.+||+||.|+|+.. .+.++.++.+.++++++|.+.+.|+..+ .+.+.+.. ...++..|.
T Consensus 70 ~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s---------~l~~~~~~~~r~~~~hP~ 140 (495)
T PRK07531 70 FCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPS---------DLQEGMTHPERLFVAHPY 140 (495)
T ss_pred eeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---------HHHhhcCCcceEEEEecC
Confidence 77888888899999999999863 5556788888888888888888887642 23333332 234444554
Q ss_pred hHHHHHhcCceeEEEeec--CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHH-HH
Q 014757 211 IANEIAVEKFSEATVGYR--DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKA-AI 287 (419)
Q Consensus 211 ~a~e~~~g~~~~~~~~~~--~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~-~l 287 (419)
.+... +.. +.+.++ .+.+.++++.++|+..|........ ..+|... .+
T Consensus 141 nP~~~--~~L--vevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k-------------------------~~~gfi~nrl 191 (495)
T PRK07531 141 NPVYL--LPL--VELVGGGKTSPETIRRAKEILREIGMKPVHIAK-------------------------EIDAFVGDRL 191 (495)
T ss_pred CCccc--Cce--EEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecC-------------------------CCcchhHHHH
Confidence 33221 222 233332 3578999999999998877665432 1123333 24
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhcc
Q 014757 288 MRIGLREMRAFSKLLFSSVKDSTFFES 314 (419)
Q Consensus 288 ~~~~~~E~~~la~a~g~g~~~~~~~~~ 314 (419)
+...++|+..++++. +++++++...
T Consensus 192 ~~a~~~EA~~L~~~g--~~s~~~id~~ 216 (495)
T PRK07531 192 LEALWREALWLVKDG--IATTEEIDDV 216 (495)
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHH
Confidence 455579999999997 4888877653
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=133.38 Aligned_cols=172 Identities=11% Similarity=0.034 Sum_probs=114.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||+++|..|.++| ++|++|+|+++. .+...+.|.. ....++. ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g-------~~V~~~d~~~~~------~~~a~~~g~~------------~~~~~~~-~~ 54 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG-------HTVYGVSRREST------CERAIERGLV------------DEASTDL-SL 54 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHHCCCc------------ccccCCH-hH
Confidence 68999999999999999999999 899999998754 4555443321 0123344 35
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceEEEeCcc-----hHH-
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCCVLMGAN-----IAN- 213 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~v~~gp~-----~a~- 213 (419)
+.++|+||+|+|...+.++++++.+.++++++|+++. ++.. .. .+.+.+.... ....+.|+. .+.
T Consensus 55 ~~~aDlVilavp~~~~~~~~~~l~~~l~~~~ii~d~~-Svk~-----~~-~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~ 127 (279)
T PRK07417 55 LKDCDLVILALPIGLLLPPSEQLIPALPPEAIVTDVG-SVKA-----PI-VEAWEKLHPRFVGSHPMAGTAESGVEAGQR 127 (279)
T ss_pred hcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcEEEeCc-chHH-----HH-HHHHHHhhCCceeeCCcCCCCcchHHHhhH
Confidence 7899999999999999999999999888888776654 2321 11 1222222111 011233332 222
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNV 266 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni 266 (419)
.+..|.+..++.....+.+.++.++++++..|.++...+...++...++..|.
T Consensus 128 ~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shl 180 (279)
T PRK07417 128 GLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHL 180 (279)
T ss_pred HHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcch
Confidence 24556555444444346788899999999999888777766666666665554
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=135.97 Aligned_cols=202 Identities=17% Similarity=0.144 Sum_probs=130.5
Q ss_pred CeEEEECcch--------------------HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCc
Q 014757 62 SKVTVVGSGN--------------------WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVK 121 (419)
Q Consensus 62 mkI~IIGaG~--------------------mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~ 121 (419)
|||.|.|+|+ -|++||..|+++| |+|++|+|+++..+ +...+.+...|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG-------~~V~v~Dr~~~~l~-~~~~~~l~~~G---- 68 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAG-------HDVVLAEPNRSILS-EELWKKVEDAG---- 68 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCC-------CeEEEEECCHHHhh-HHHHHHHHHCC----
Confidence 7899999997 4888999999999 99999999875310 00123344333
Q ss_pred cCCCCccCCCeEecCCHHHHhcCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC
Q 014757 122 YLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG 200 (419)
Q Consensus 122 ~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g 200 (419)
++.++++.+++.++|+||+|+|+.. ++++++.+.+.++++++|++++++-. ...++.+.+.++
T Consensus 69 ----------i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~------~~~s~~l~~~l~ 132 (342)
T PRK12557 69 ----------VKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSP------VVLYYSLEGELR 132 (342)
T ss_pred ----------CEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCH------HHHHHHHHHHhc
Confidence 4566777778899999999999977 99999999999999999998876422 222234444332
Q ss_pred C-----------ceEEEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHH
Q 014757 201 V-----------SCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAI 269 (419)
Q Consensus 201 ~-----------~~~v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~ 269 (419)
. +..+..+|.....+..|.++. ..... +++.+++++++|+..|.++++.+. -.....|.+
T Consensus 133 ~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~-~~~~~-~~e~~e~v~~LL~a~G~~v~~~~~-g~~~~vk~~------ 203 (342)
T PRK12557 133 TKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTN-GTELA-TEEQIEKCVELAESIGKEPYVVPA-DVVSAVADM------ 203 (342)
T ss_pred ccccccCeeecCCccccccccchheEEeCCCcc-cccCC-CHHHHHHHHHHHHHcCCEEEEeCH-HHHHHHHHH------
Confidence 1 112223333322222222210 11112 678889999999999988876653 222222333
Q ss_pred HHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhc
Q 014757 270 AAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFE 313 (419)
Q Consensus 270 ~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~ 313 (419)
+|...++...+..|...++++.| .+|..+.+
T Consensus 204 -----------~n~l~av~~a~~aE~~~l~~~~~--~~p~~~~~ 234 (342)
T PRK12557 204 -----------GSLVTAVALSGVLDYYSVGTKII--KAPKEMIE 234 (342)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 34445566777888888888884 56665543
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=132.36 Aligned_cols=201 Identities=17% Similarity=0.165 Sum_probs=128.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-----CcCCccCCCC--ccCCCe
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-----NENVKYLPGI--KLGKNV 132 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-----g~~~~~~~~~--~l~~~i 132 (419)
.++||+|||+|.||+++|..|+++| ++|++|+++++. .+.+++. +.... .+. ....++
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g-------~~V~~~d~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~i 67 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKG-------LQVVLIDVMEGA------LERARGVIERALGVYAP--LGIASAGMGRI 67 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCHHH------HHHHHHHHHHHHHHhhh--cccHHHHhhce
Confidence 3578999999999999999999999 899999998765 3333321 11000 000 011235
Q ss_pred EecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCc
Q 014757 133 VADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGA 209 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp 209 (419)
..++++++++++||+||+|+|+. ....++.++.+.++++++|++.++|+.. ..+.+.++.+ ..+...|
T Consensus 68 ~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~---------~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 68 RMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPI---------TAIAQAVTRPERFVGTHF 138 (311)
T ss_pred EEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCH---------HHHHhhcCCcccEEEEcc
Confidence 56778877788999999999985 4778888898888888888888888753 2333333321 1122223
Q ss_pred chHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc-CcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHH
Q 014757 210 NIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAV-QDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIM 288 (419)
Q Consensus 210 ~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~-~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~ 288 (419)
..+... +....++.+...+.+.++++.++|+..|..+... .|..+. +. +| +.
T Consensus 139 ~~p~~~--~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~----------------nr----~~ 191 (311)
T PRK06130 139 FTPADV--IPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IA----------------NR----IQ 191 (311)
T ss_pred CCCCcc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HH----------------HH----HH
Confidence 222211 2222223232236789999999999999776554 354332 11 11 23
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhc
Q 014757 289 RIGLREMRAFSKLLFSSVKDSTFFE 313 (419)
Q Consensus 289 ~~~~~E~~~la~a~g~g~~~~~~~~ 313 (419)
...++|+..++++. +++++++..
T Consensus 192 ~~~~~Ea~~l~~~g--~~~~~~id~ 214 (311)
T PRK06130 192 HALAREAISLLEKG--VASAEDIDE 214 (311)
T ss_pred HHHHHHHHHHHHcC--CCCHHHHHH
Confidence 45689999998887 467776654
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-13 Score=123.69 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=114.9
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+||| +|+||++++..|+++| ++|++|+|++++ .+.+.....+ .+....+..++.. .+..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-------~~V~v~~r~~~~------~~~l~~~~~~--~~~~~g~~~~~~~-~~~~e 64 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-------NKIIIGSRDLEK------AEEAAAKALE--ELGHGGSDIKVTG-ADNAE 64 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-------CEEEEEEcCHHH------HHHHHHHHHh--hccccCCCceEEE-eChHH
Confidence 7899997 8999999999999999 999999998766 4444332110 0000001112233 34456
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCC--------CcccHHHHHHhHhCC-ceEEEeCcch
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKRE--------GPCMISTLISEQLGV-SCCVLMGANI 211 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~--------~~~~~~~~i~~~~g~-~~~v~~gp~~ 211 (419)
++.++|+||+|+|.+++.++++++.+.+. +++||+++||+..... .....++.+.+.++. .-.+..-|+.
T Consensus 65 a~~~aDvVilavp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~ 143 (219)
T TIGR01915 65 AAKRADVVILAVPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNL 143 (219)
T ss_pred HHhcCCEEEEECCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccC
Confidence 68899999999999999999999887765 5899999999986200 012234667776654 2233333444
Q ss_pred HHHHHhc----CceeEEEeecCCHHHHHHHHHHhCCC-CcEEEEcCcH
Q 014757 212 ANEIAVE----KFSEATVGYRDNREIAEKWVQLFSTP-YFMVTAVQDV 254 (419)
Q Consensus 212 a~e~~~g----~~~~~~~~~~~~~~~~~~l~~ll~~~-g~~~~~~~di 254 (419)
..+...+ ....+.+++. +++..+++.++.+.. ||.......+
T Consensus 144 ~a~~~~~~~~~~~~~~~v~Gd-d~~ak~~v~~L~~~~~G~~~vd~G~l 190 (219)
T TIGR01915 144 SAVLLQDVDDEVDCDVLVCGD-DEEAKEVVAELAGRIDGLRALDAGPL 190 (219)
T ss_pred CHHHhcCCCCCCCCCEEEECC-CHHHHHHHHHHHHhcCCCCcccCCch
Confidence 4332221 1122344544 677788889999988 9987665554
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=132.92 Aligned_cols=212 Identities=12% Similarity=0.067 Sum_probs=138.6
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+||| +|.||+++|..|.++| ++|++|+|+++. .+.+.... ++..++++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-------~~V~v~~r~~~~------~~~~a~~~-------------gv~~~~~~~e 54 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-------FEVIVTGRDPKK------GKEVAKEL-------------GVEYANDNID 54 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-------CEEEEEECChHH------HHHHHHHc-------------CCeeccCHHH
Confidence 6899997 8999999999999999 899999998754 33332211 1234567777
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-----EEEeCcchHHHH
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-----CVLMGANIANEI 215 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-----~v~~gp~~a~e~ 215 (419)
++.++|+||+|+|...+.++++++.+.++++++|+++++.- ..+.+.+.+.++... ..+.||..+ .
T Consensus 55 ~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsSvK-------~~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~ 125 (437)
T PRK08655 55 AAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTSVK-------ERPVEAMEEYAPEGVEILPTHPMFGPRTP--S 125 (437)
T ss_pred HhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccccc-------HHHHHHHHHhcCCCCEEEEcCCCCCCCCc--c
Confidence 78899999999999999999999999999999999887411 122345555543211 233455543 2
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHH---HHHHHHHHHHHHhhh-cCCCCccHHHHHHHHH
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELC---GTLKNVVAIAAGFVD-GLEMGNNTKAAIMRIG 291 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~---~al~Ni~a~~~g~~~-~~~~~~n~~~~l~~~~ 291 (419)
..|....++.+...+.+.+++++++|+..|.++...+...++... ..+.++++.+.+... ..+........+...+
T Consensus 126 ~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~~ 205 (437)
T PRK08655 126 LKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASPI 205 (437)
T ss_pred cCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcChh
Confidence 345433323332235788899999999999998877665554443 334555554444321 2222223334677778
Q ss_pred HHHHHHHHHHhcCCCCcc
Q 014757 292 LREMRAFSKLLFSSVKDS 309 (419)
Q Consensus 292 ~~E~~~la~a~g~g~~~~ 309 (419)
++.+..+..+.. +.+|+
T Consensus 206 frd~~~~~tRIa-~~~p~ 222 (437)
T PRK08655 206 YELMIDIIGRIL-GQNPY 222 (437)
T ss_pred hHHHHHHHHHHh-cCCHH
Confidence 888866544442 34554
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=127.67 Aligned_cols=182 Identities=11% Similarity=0.097 Sum_probs=115.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.+..+||+|||+|.||.++|..|.++|. .++|++|+|+++. .+..++.|.. .....+
T Consensus 3 ~~~~~~I~IIG~G~mG~sla~~l~~~g~-----~~~V~~~dr~~~~------~~~a~~~g~~------------~~~~~~ 59 (307)
T PRK07502 3 APLFDRVALIGIGLIGSSLARAIRRLGL-----AGEIVGADRSAET------RARARELGLG------------DRVTTS 59 (307)
T ss_pred ccCCcEEEEEeeCHHHHHHHHHHHhcCC-----CcEEEEEECCHHH------HHHHHhCCCC------------ceecCC
Confidence 4456799999999999999999999882 1389999998754 4555443321 123455
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEE----------e
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVL----------M 207 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~----------~ 207 (419)
+++++.++|+||+|+|.....++++++.+.++++++|+++. ++.. ...+.+.+.++....++ .
T Consensus 60 ~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~dvg-s~k~------~~~~~~~~~~~~~~~~v~~hPm~g~e~~ 132 (307)
T PRK07502 60 AAEAVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTDVG-SVKA------SVIAAMAPHLPEGVHFIPGHPLAGTEHS 132 (307)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEeCc-cchH------HHHHHHHHhCCCCCeEEeCCCCCCCccc
Confidence 66678899999999999999999999988888888877653 2221 11222333222111122 2
Q ss_pred CcchH-HHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHH
Q 014757 208 GANIA-NEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAI 269 (419)
Q Consensus 208 gp~~a-~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~ 269 (419)
||..+ .++..|....++.....+.+.++.+.++++..|.++...+.-.++...+. +.++++.
T Consensus 133 G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~ 198 (307)
T PRK07502 133 GPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAY 198 (307)
T ss_pred chhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHH
Confidence 23322 13445554333333333677889999999999988877654444444333 4444443
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=130.40 Aligned_cols=206 Identities=15% Similarity=0.130 Sum_probs=126.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+||+|||+|.||+++|..|.++| ++|.+|+++++. .+.....+... . -..+++++++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G-------~~v~i~~~~~~~------~~~~~a~~~~~--------~--~~~~~~~~~~ 57 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAG-------PDVFIIGYDPSA------AQLARALGFGV--------I--DELAADLQRA 57 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcC-------CCeEEEEeCCCH------HHHHHHhcCCC--------C--cccccCHHHH
Confidence 47999999999999999999999 899999998765 22222222111 0 0134566777
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhc-cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEE-----E-----eCcc
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVG-KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCV-----L-----MGAN 210 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~-~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v-----~-----~gp~ 210 (419)
+.+||+||+|||...+.++++++.+ .++++++|.++. ++-. .+.+.+.+..+....+ + +|+.
T Consensus 58 ~~~aDlVilavP~~~~~~vl~~l~~~~l~~~~ivtDv~-SvK~------~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~ 130 (359)
T PRK06545 58 AAEADLIVLAVPVDATAALLAELADLELKPGVIVTDVG-SVKG------AILAEAEALLGDLIRFVGGHPMAGSHKSGVA 130 (359)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHhhcCCCCCcEEEeCc-cccH------HHHHHHHHhcCCCCeEEeeCCcCcCchhhHH
Confidence 8899999999999999999999987 477887776553 2321 1223333332211111 2 2233
Q ss_pred hHH-HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHHhhhcCCCCccHHHH
Q 014757 211 IAN-EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAGFVDGLEMGNNTKAA 286 (419)
Q Consensus 211 ~a~-e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g~~~~~~~~~n~~~~ 286 (419)
.+. +++.|.++.++.....+.+.++.++++++..|..+...+.-.++...++ +.++++.+.+.. +.........
T Consensus 131 aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al~~~--~~~~~~~~~~ 208 (359)
T PRK06545 131 AARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSLAAR--LAGEHPLALR 208 (359)
T ss_pred HhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHHHHh--hccCchHHHh
Confidence 332 4566765655554434678889999999999988876654444444443 444444333211 1111122234
Q ss_pred HHHHHHHHHHHHH
Q 014757 287 IMRIGLREMRAFS 299 (419)
Q Consensus 287 l~~~~~~E~~~la 299 (419)
+...+++.+++++
T Consensus 209 la~~gfrd~tRia 221 (359)
T PRK06545 209 LAAGGFRDITRIA 221 (359)
T ss_pred hhcccccCCcccc
Confidence 5555566555555
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-12 Score=123.17 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=131.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH-
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL- 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~- 138 (419)
.+|+|+|+|+|.||+.+|..|.++| +.|.+++++... ........+...+ ..+.+.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g-------~~v~i~g~d~~~------~~~~~a~~lgv~d----------~~~~~~~ 58 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG-------LVVRIIGRDRSA------ATLKAALELGVID----------ELTVAGL 58 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC-------CeEEEEeecCcH------HHHHHHhhcCccc----------ccccchh
Confidence 4689999999999999999999999 899999988764 1111111111110 122232
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--c---eEEEeCcchHH
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--S---CCVLMGANIAN 213 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~---~~v~~gp~~a~ 213 (419)
.++...+|+||+|||-..+.++++++.+.++++++|++++.- ...+.+.+++..+. + ...+.||..-.
T Consensus 59 ~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~-------K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~ 131 (279)
T COG0287 59 AEAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTDVGSV-------KSSVVEAMEKYLPGDVRFVGGHPMFGPEADA 131 (279)
T ss_pred hhhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEecccc-------cHHHHHHHHHhccCCCeeEecCCCCCCcccc
Confidence 445678999999999999999999999999999999987531 12233455554432 1 12345553112
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHH---HHHHHHHHHHHhh-hcCCCCccHHHHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCG---TLKNVVAIAAGFV-DGLEMGNNTKAAIMR 289 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~---al~Ni~a~~~g~~-~~~~~~~n~~~~l~~ 289 (419)
....+....++.....+.+.++++.++++..|.++...+.-.++...+ ++.|+++.+.+.. ............+..
T Consensus 132 ~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as 211 (279)
T COG0287 132 GLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLAS 211 (279)
T ss_pred cccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhccc
Confidence 344555443444443356789999999999998888877666655544 4556655554432 222111111234455
Q ss_pred HHHHHHHHHH
Q 014757 290 IGLREMRAFS 299 (419)
Q Consensus 290 ~~~~E~~~la 299 (419)
.+++.+.|++
T Consensus 212 ~~frd~tRia 221 (279)
T COG0287 212 GGFRDITRIA 221 (279)
T ss_pred cchhhHHHHH
Confidence 5566555444
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=120.40 Aligned_cols=114 Identities=13% Similarity=0.184 Sum_probs=87.0
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCC-ccCCCeEecCCHHHHh
Q 014757 64 VTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGI-KLGKNVVADPDLENAV 142 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~-~l~~~i~~~~~~~ea~ 142 (419)
|+|+|+|+||+.+|..|+++| ++|+++.|++ . .+.+++.|.......+. .+.. .....+..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g-------~~V~l~~r~~-~------~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG-------HDVTLVSRSP-R------LEAIKEQGLTITGPDGDETVQP-PIVISAPSADA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT-------CEEEEEESHH-H------HHHHHHHCEEEEETTEEEEEEE-EEEESSHGHHH
T ss_pred CEEECcCHHHHHHHHHHHHCC-------CceEEEEccc-c------HHhhhheeEEEEecccceeccc-ccccCcchhcc
Confidence 789999999999999999999 9999999987 5 67788877654322211 1111 11223332236
Q ss_pred cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC
Q 014757 143 KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG 200 (419)
Q Consensus 143 ~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g 200 (419)
..+|+||+|||+.+++++++.+.+++.+++.|++++||++.. +.+.+.++
T Consensus 66 ~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~--------~~l~~~~~ 115 (151)
T PF02558_consen 66 GPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNE--------EVLAEYFP 115 (151)
T ss_dssp STESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHH--------HHHHCHST
T ss_pred CCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcH--------HHHHHHcC
Confidence 789999999999999999999999999999999999999863 56666654
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-13 Score=109.39 Aligned_cols=94 Identities=19% Similarity=0.288 Sum_probs=73.9
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEE-ecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC-CHHH
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMW-VFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP-DLEN 140 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~-~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~-~~~e 140 (419)
||+|||+|+||++++..|.++|. . +++|.++ +|++++ .+.+.+.. ++.++. +..+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~-~---~~~v~~~~~r~~~~------~~~~~~~~-------------~~~~~~~~~~~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI-K---PHEVIIVSSRSPEK------AAELAKEY-------------GVQATADDNEE 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-----GGEEEEEEESSHHH------HHHHHHHC-------------TTEEESEEHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-C---ceeEEeeccCcHHH------HHHHHHhh-------------ccccccCChHH
Confidence 79999999999999999999984 2 2789966 888765 55554432 123344 6778
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+++.+|+||+|||++++.++++++ +...+++++||+++|
T Consensus 58 ~~~~advvilav~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 58 AAQEADVVILAVKPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHHHTSEEEE-S-GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred hhccCCEEEEEECHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 889999999999999999999999 666789999999876
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-12 Score=123.57 Aligned_cols=207 Identities=13% Similarity=0.121 Sum_probs=133.4
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
++.+|||+|||+|.||.++|..|.+.| ++|++|++++.. +.....| +...++
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G-------~~V~~~d~~~~~-------~~a~~~g--------------v~~~~~ 84 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQG-------HTVLATSRSDYS-------DIAAELG--------------VSFFRD 84 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCC-------CEEEEEECccHH-------HHHHHcC--------------CeeeCC
Confidence 556789999999999999999999999 899999987521 2222222 223456
Q ss_pred HHHHh-cCCCEEEEccCcchHHHHHHHH-hccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-EEEeCcchHHH
Q 014757 138 LENAV-KDANMLVFVTPHQFMEGICKRL-VGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-CVLMGANIANE 214 (419)
Q Consensus 138 ~~ea~-~~aDlVilavp~~~~~~vl~~l-~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-~v~~gp~~a~e 214 (419)
.++++ .++|+||+|||...+.++++++ .+.++++++|+++...-. .+.+.+.+.++... .+...|....+
T Consensus 85 ~~e~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~-------~~~~~~~~~l~~~~~~V~~HPmaG~e 157 (304)
T PLN02256 85 PDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKE-------FPKNLLLQVLPEEFDILCTHPMFGPE 157 (304)
T ss_pred HHHHhhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCCchH-------HHHHHHHHhCCCCCeEEecCCCCCCC
Confidence 66654 4699999999999999999998 677888999998865211 12345555543222 22233433222
Q ss_pred H----HhcCceeEEEe------ecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHHhhhcCCCCc
Q 014757 215 I----AVEKFSEATVG------YRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAGFVDGLEMGN 281 (419)
Q Consensus 215 ~----~~g~~~~~~~~------~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g~~~~~~~~~ 281 (419)
. ..+.+ +++. ...+.+..+.+.++++..|.++...+.-.+++..+. +.++++.+..... .
T Consensus 158 ~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~~---~-- 230 (304)
T PLN02256 158 SGKGGWAGLP--FVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKME---L-- 230 (304)
T ss_pred CCccccCCCe--EEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHcC---C--
Confidence 1 22322 1121 122567888999999999998888766555555443 4555544332211 1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 014757 282 NTKAAIMRIGLREMRAFSKLLFSSVKD 308 (419)
Q Consensus 282 n~~~~l~~~~~~E~~~la~a~g~g~~~ 308 (419)
+ ...+...+++.+++++..+- ..+|
T Consensus 231 ~-~~~~~~~gfrd~tria~r~~-~~~p 255 (304)
T PLN02256 231 E-STPINTKGYETLLRLVENTS-SDSF 255 (304)
T ss_pred c-ccccccccHHHHHHHHHhhc-CCCH
Confidence 1 13567778999999998773 3344
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=124.42 Aligned_cols=199 Identities=15% Similarity=0.108 Sum_probs=124.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcC--cCCccCCCCc---------c
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTN--ENVKYLPGIK---------L 128 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g--~~~~~~~~~~---------l 128 (419)
.++||+|||+|.||..+|..|+++| ++|++|+++++. .+.+++.- ....+.+... .
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G-------~~V~l~d~~~~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHG-------FDVTIYDISDEA------LEKAKERIAKLADRYVRDLEATKEAPAEAA 68 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcC-------CeEEEEeCCHHH------HHHHHHHHHHHHHHHHHcCCCChhhhHHHH
Confidence 4579999999999999999999999 999999998764 22222110 0000000000 1
Q ss_pred CCCeEecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE
Q 014757 129 GKNVVADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC 204 (419)
Q Consensus 129 ~~~i~~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~ 204 (419)
..+++.+++.++++.++|+||+|+|+. ....+++++.+.+++++++++.+.++.+ .+. .+.... ++.
T Consensus 69 ~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~--------~~~-~~~~~~~~r~v 139 (287)
T PRK08293 69 LNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP--------SQF-AEATGRPEKFL 139 (287)
T ss_pred HcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH--------HHH-HhhcCCcccEE
Confidence 235677889888889999999999975 6788889999988888988776655533 222 222322 211
Q ss_pred E--EeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc-CcHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 014757 205 V--LMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAV-QDVEGVELCGTLKNVVAIAAGFVDGLEMGN 281 (419)
Q Consensus 205 v--~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~-~di~~~e~~~al~Ni~a~~~g~~~~~~~~~ 281 (419)
. ...|.+ ......++.+...+.+.++++.++++..|...... .|..+-
T Consensus 140 g~Hf~~p~~-----~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgf------------------------ 190 (287)
T PRK08293 140 ALHFANEIW-----KNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGY------------------------ 190 (287)
T ss_pred EEcCCCCCC-----cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCH------------------------
Confidence 1 112211 12222223333347889999999999988765443 353221
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCccchh
Q 014757 282 NTKAAIMRIGLREMRAFSKLLFSSVKDSTFF 312 (419)
Q Consensus 282 n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~ 312 (419)
....+....++|+..+.+.- -.+++++.
T Consensus 191 -i~nRi~~~~~~ea~~l~~~g--~a~~~~iD 218 (287)
T PRK08293 191 -ILNSLLVPFLSAALALWAKG--VADPETID 218 (287)
T ss_pred -hHHHHHHHHHHHHHHHHHcC--CCCHHHHH
Confidence 11235566677888777663 24565553
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-12 Score=123.08 Aligned_cols=205 Identities=13% Similarity=0.072 Sum_probs=128.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCc-----chHHHHHHhcCcCCccCCCCccCCCeEe
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSG-----EKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~-----~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
.++||+|||+|.||..+|..|+++| ++|++++++++..+. ++..+.+.+.|..... .......+++.
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g-------~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~l~~ 73 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAG-------YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA-DKEAALARITG 73 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCC-------CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEE
Confidence 4678999999999999999999999 899999998765100 0001122222210000 00001124666
Q ss_pred cCCHHHHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcch
Q 014757 135 DPDLENAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANI 211 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~ 211 (419)
+++.++ +.+||+||+|+|.+. ..++++++.+.+++++++++.++|+.. ..+.+.++.+ -.+...|..
T Consensus 74 ~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~---------~~la~~~~~~~r~ig~h~~~ 143 (282)
T PRK05808 74 TTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSI---------TELAAATKRPDKVIGMHFFN 143 (282)
T ss_pred eCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---------HHHHHhhCCCcceEEeeccC
Confidence 777764 789999999999743 368899999999999999888888764 2334444322 122223333
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHH
Q 014757 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIG 291 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~ 291 (419)
+.++..+. .++.+...+.+..+++.++|+..|..+....|..+. ....++...
T Consensus 144 P~~~~~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~-------------------------i~~Ri~~~~ 196 (282)
T PRK05808 144 PVPVMKLV--EIIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGF-------------------------VVNRILIPM 196 (282)
T ss_pred CcccCccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccCh-------------------------HHHHHHHHH
Confidence 22222221 233333447899999999999999887766654321 112466777
Q ss_pred HHHHHHHHHHhcCCCCccch
Q 014757 292 LREMRAFSKLLFSSVKDSTF 311 (419)
Q Consensus 292 ~~E~~~la~a~g~g~~~~~~ 311 (419)
++|+.++.+. |+ .+++++
T Consensus 197 ~~ea~~~~~~-gv-~~~~di 214 (282)
T PRK05808 197 INEAIFVLAE-GV-ATAEDI 214 (282)
T ss_pred HHHHHHHHHh-CC-CCHHHH
Confidence 8888888766 32 445544
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=126.48 Aligned_cols=204 Identities=15% Similarity=0.099 Sum_probs=123.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc--CcCC----ccCCCC---ccCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT--NENV----KYLPGI---KLGK 130 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~--g~~~----~~~~~~---~l~~ 130 (419)
.+.||+|||+|.||+.+|..|+++| ++|++|+++++. .++..+.+++. +... ...... .+..
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G-------~~V~l~d~~~~~--l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~ 72 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTG-------YDVTIVDVSEEI--LKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA 72 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcC-------CeEEEEeCCHHH--HHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHh
Confidence 3568999999999999999999999 899999998765 11111222221 0000 000000 1123
Q ss_pred CeEecCCHHHHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-EEEe
Q 014757 131 NVVADPDLENAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-CVLM 207 (419)
Q Consensus 131 ~i~~~~~~~ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-~v~~ 207 (419)
++..+++. +++.++|+||+|+|+.. ...+++++.+.+++++++++.++|+... .+.+.+..+. .+..
T Consensus 73 ~i~~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~---------~la~~~~~~~r~ig~ 142 (291)
T PRK06035 73 RIRTSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIA---------EIATALERKDRFIGM 142 (291)
T ss_pred CcEeeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHH---------HHHhhcCCcccEEEE
Confidence 45566676 45789999999999864 7888889999889999999999887642 2333332211 1111
Q ss_pred CcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHH
Q 014757 208 GANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAI 287 (419)
Q Consensus 208 gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l 287 (419)
.+..+..+. + ...++.+...+.+.++++.++++..|..+....|..+-. ...+
T Consensus 143 hf~~P~~~~-~-~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv-------------------------~nRl 195 (291)
T PRK06035 143 HWFNPAPVM-K-LIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFF-------------------------TTRF 195 (291)
T ss_pred ecCCCcccC-c-cEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCee-------------------------HHHH
Confidence 111111110 1 112222333468899999999999888877666643321 1235
Q ss_pred HHHHHHHHHHHHHHhcCCCCccch
Q 014757 288 MRIGLREMRAFSKLLFSSVKDSTF 311 (419)
Q Consensus 288 ~~~~~~E~~~la~a~g~g~~~~~~ 311 (419)
....++|+.++.+. |. .+++++
T Consensus 196 ~~~~~~ea~~~~~~-g~-a~~~~i 217 (291)
T PRK06035 196 IEGWLLEAIRSFEI-GI-ATIKDI 217 (291)
T ss_pred HHHHHHHHHHHHHc-CC-CCHHHH
Confidence 56667777777655 31 445554
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.5e-12 Score=122.72 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=108.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-------cCcCCccCCC---CccCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-------TNENVKYLPG---IKLGK 130 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-------~g~~~~~~~~---~~l~~ 130 (419)
++||+|||+|.||..+|..|+++| ++|++|+++++. ++.+.+ .+........ .....
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G-------~~V~~~d~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 67 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSG-------FQTTLVDIKQEQ------LESAQQEIASIFEQGVARGKLTEAARQAALA 67 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCC-------CcEEEEeCCHHH------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 368999999999999999999999 999999998765 333321 1100000000 01123
Q ss_pred CeEecCCHHHHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--c---e
Q 014757 131 NVVADPDLENAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--S---C 203 (419)
Q Consensus 131 ~i~~~~~~~ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~---~ 203 (419)
+++.++++++++.+||+||+|+|+.. ...++.++.+.+++++++++.+.++.++ .+.+.... + .
T Consensus 68 ~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~---------~l~~~~~~~~r~~g~ 138 (288)
T PRK09260 68 RLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPT---------EIASFTKRPERVIAM 138 (288)
T ss_pred CeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---------HHHhhcCCcccEEEE
Confidence 46677888888899999999999853 4566788888888898886665555542 22232222 1 1
Q ss_pred EEEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHH
Q 014757 204 CVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVE 255 (419)
Q Consensus 204 ~v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~ 255 (419)
..+ .|.+. +....++.+...+.+.++++.++++..|..+....|..
T Consensus 139 h~~-~Pv~~-----~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~ 184 (288)
T PRK09260 139 HFF-NPVHK-----MKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFP 184 (288)
T ss_pred ecC-CCccc-----CceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc
Confidence 222 34321 22222222222478899999999999998877666643
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=131.92 Aligned_cols=254 Identities=16% Similarity=0.058 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCHHHHhcC---CCE
Q 014757 72 WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDLENAVKD---ANM 147 (419)
Q Consensus 72 mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~~ea~~~---aDl 147 (419)
||..||.+|+++| ++|++|||++++ ++.+.+. +.. .++....++++++.. +|+
T Consensus 1 MG~~mA~nL~~~G-------~~V~v~nrt~~~------~~~l~~~~g~~----------~g~~~~~s~~e~v~~l~~~~~ 57 (459)
T PRK09287 1 MGKNLALNIASHG-------YTVAVYNRTPEK------TDEFLAEEGKG----------KKIVPAYTLEEFVASLEKPRK 57 (459)
T ss_pred CcHHHHHHHHhCC-------CeEEEECCCHHH------HHHHHHhhCCC----------CCeEeeCCHHHHHhhCCCCCE
Confidence 8999999999999 999999999877 5666552 210 124567888887764 899
Q ss_pred EEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHHHHhcCceeE
Q 014757 148 LVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANEIAVEKFSEA 223 (419)
Q Consensus 148 Vilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e~~~g~~~~~ 223 (419)
||+|||+ ..++++++++.+.+.++.+||+++|..... .....+.+.+. |.+ +.+.+|+..|. .| + .
T Consensus 58 Ii~mv~~g~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~---t~~~~~~l~~~-Gi~fvdapVSGG~~gA~---~G-~--s 127 (459)
T PRK09287 58 ILLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKD---TIRREKELAEK-GIHFIGMGVSGGEEGAL---HG-P--S 127 (459)
T ss_pred EEEECCCchHHHHHHHHHHhcCCCCCEEEECCCCCHHH---HHHHHHHHHhc-CCeEEecCCCCCHHHHh---cC-C--E
Confidence 9999998 689999999999999999999998754321 12222333332 432 35556665554 35 3 3
Q ss_pred EEeecCCHHHHHHHHHHhCCCCcEE-------EEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHH
Q 014757 224 TVGYRDNREIAEKWVQLFSTPYFMV-------TAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMR 296 (419)
Q Consensus 224 ~~~~~~~~~~~~~l~~ll~~~g~~~-------~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~ 296 (419)
++.++ +.+.+++++++|+..+-++ .+.++. |....+|+.+|.......+++.|+.
T Consensus 128 iM~GG-~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~-----------------GaGh~vKmvhN~ie~~~mq~iaEa~ 189 (459)
T PRK09287 128 IMPGG-QKEAYELVAPILEKIAAKVEDGEPCVTYIGPD-----------------GAGHYVKMVHNGIEYGDMQLIAEAY 189 (459)
T ss_pred EEEeC-CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 7899999999998765443 333432 2233344556666677889999999
Q ss_pred HHHHH-hcCCCCccchhcccC-CcceeecccCcccHH-HHHHhhhccC----CCCHHHHHHHHhcCCeeehHHHHHHHHH
Q 014757 297 AFSKL-LFSSVKDSTFFESCG-VADLITTCLGGRNRK-VAEAFAKNEG----KRSFDDLEAEMLQGQKLQGVSTAREVYE 369 (419)
Q Consensus 297 ~la~a-~g~g~~~~~~~~~~~-~~d~~~t~~~~rn~~-~g~~l~~~g~----~~~~~~~~~~~~~g~~~Eg~~~~~~v~~ 369 (419)
.++++ . |++++++.+... |- .....+.-.. ....+.. ++ +.-++.+... .+++-+|.+++...
T Consensus 190 ~l~~~~~--Gl~~~~l~~v~~~wn---~g~~~S~l~ei~~~~l~~-~d~~~~~~~~d~i~d~--~~~~gtg~Wt~~~a-- 259 (459)
T PRK09287 190 DLLKDGL--GLSAEEIADVFAEWN---KGELNSYLIEITADILRQ-KDEETGKPLVDVILDK--AGQKGTGKWTSQSA-- 259 (459)
T ss_pred HHHHHhc--CCCHHHHHHHHHHhc---CCCccChHHHhHhHHHhc-CCCCCCCcchHHhcCc--ccCCcHHHHHHHHH--
Confidence 99994 7 588877655320 00 0001111111 1222322 11 0123333222 35666787875544
Q ss_pred HHHHcCCCcCCcHHHH-HHHHH
Q 014757 370 VLSHRGWLELFPLFAT-VHEIC 390 (419)
Q Consensus 370 ~a~~~gv~~~~P~~~~-~~~~l 390 (419)
-++|+ ++|++.. +++.+
T Consensus 260 --~~~~v--~~~~i~~AvfaR~ 277 (459)
T PRK09287 260 --LDLGV--PLTLITEAVFARY 277 (459)
T ss_pred --HHhCC--ChHHHHHHHHHHh
Confidence 46778 8998754 44444
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=115.73 Aligned_cols=160 Identities=17% Similarity=0.248 Sum_probs=100.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc------c-CCCeEe
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK------L-GKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~------l-~~~i~~ 134 (419)
|||+|||+|.+|..+|..|+++| |+|+.+|.++++ ++.+++ |..+.+.++.. + ..++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-------~~V~g~D~~~~~------v~~l~~-g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-------HQVIGVDIDEEK------VEALNN-GELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-------SEEEEE-S-HHH------HHHHHT-TSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCC-------CEEEEEeCChHH------HHHHhh-ccccccccchhhhhccccccccchh
Confidence 89999999999999999999999 999999999876 788887 33333444431 1 357889
Q ss_pred cCCHHHHhcCCCEEEEccCcc----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcc-cHHHHHHhHhC--C
Q 014757 135 DPDLENAVKDANMLVFVTPHQ----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPC-MISTLISEQLG--V 201 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~-~~~~~i~~~~g--~ 201 (419)
+++.++++.++|++|+|||.. .++++++.|.+.++++++||.-++ +.+. +.+ ....++++..+ .
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST-vppG--tt~~~~~~ile~~~~~~~ 143 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST-VPPG--TTEELLKPILEKRSGKKE 143 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS-SSTT--HHHHHHHHHHHHHCCTTT
T ss_pred hhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE-EEEe--eehHhhhhhhhhhccccc
Confidence 999998899999999999862 488889999999998888876654 4442 222 34455554432 3
Q ss_pred ceEEEeCcchHH-----HHHhcCceeEEEeecCCHHHHHHHHHH
Q 014757 202 SCCVLMGANIAN-----EIAVEKFSEATVGYRDNREIAEKWVQL 240 (419)
Q Consensus 202 ~~~v~~gp~~a~-----e~~~g~~~~~~~~~~~~~~~~~~l~~l 240 (419)
++.+...|.+.. +-. ..+..++.|.. +....++++++
T Consensus 144 ~f~la~~PErl~~G~a~~d~-~~~~rvV~G~~-~~~~~~~~~~l 185 (185)
T PF03721_consen 144 DFHLAYSPERLREGRAIEDF-RNPPRVVGGCD-DESAEERLKEL 185 (185)
T ss_dssp CEEEEE------TTSHHHHH-HSSSEEEEEES-SHHHHHHHHHH
T ss_pred CCeEEECCCccCCCCcchhc-cCCCEEEEeCC-cHHHHHHHhcC
Confidence 466666666543 212 23555666665 55555566653
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.3e-12 Score=121.33 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=108.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-------CcCCccCCCC---cc
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-------NENVKYLPGI---KL 128 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-------g~~~~~~~~~---~l 128 (419)
+.++||+|||+|.||..+|..|+++| ++|++|+++++. .+.+.+.+.+. |. ++.. ..
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G-------~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~----~~~~~~~~~ 68 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAG-------YDVLLNDVSADR--LEAGLATINGNLARQVAKGK----ISEEARAAA 68 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC-------CeEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCC----CCHHHHHHH
Confidence 45679999999999999999999999 999999998765 11111112111 11 0000 01
Q ss_pred CCCeEecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE
Q 014757 129 GKNVVADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC 204 (419)
Q Consensus 129 ~~~i~~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~ 204 (419)
..+++.+++.++ +.+||+||+|+|+. ..+.+++++.+.+++++++++.+.++.+ + .+.+.... ++.
T Consensus 69 ~~~i~~~~~~~~-~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--------s-~la~~~~~~~r~~ 138 (292)
T PRK07530 69 LARISTATDLED-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--------T-RLASATDRPERFI 138 (292)
T ss_pred HhCeEeeCCHHH-hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--------H-HHHhhcCCcccEE
Confidence 134666777754 78999999999973 4667788999999999999887777653 1 23332221 111
Q ss_pred --EEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014757 205 --VLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 205 --v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
....|.... ....++.+...+.+.++++.++|+..|..+.+..|.
T Consensus 139 g~h~~~p~~~~-----~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~ 185 (292)
T PRK07530 139 GIHFMNPVPVM-----KLVELIRGIATDEATFEAAKEFVTKLGKTITVAEDF 185 (292)
T ss_pred EeeccCCcccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 111122211 112233333347899999999999998877776664
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-11 Score=119.44 Aligned_cols=173 Identities=16% Similarity=0.094 Sum_probs=106.8
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHH-------HHHhcCcCCccCCCCccCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTD-------VINRTNENVKYLPGIKLGKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~-------~i~~~g~~~~~~~~~~l~~~ 131 (419)
+.++||+|||+|.||..+|..|+.+| ++|++|+++++.. ++..+ .+.+.|....... ......
T Consensus 2 ~~~~~V~vIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ 71 (295)
T PLN02545 2 AEIKKVGVVGAGQMGSGIAQLAAAAG-------MDVWLLDSDPAAL--SRGLDSISSSLARLVKKGKMSQEEA-DATLGR 71 (295)
T ss_pred CCcCEEEEECCCHHHHHHHHHHHhcC-------CeEEEEeCCHHHH--HHHHHHHHHHHHHHHHcCCCCHHHH-HHHHhc
Confidence 44578999999999999999999999 9999999987541 11111 1222221000000 000112
Q ss_pred eEecCCHHHHhcCCCEEEEccC--cchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceEEEe
Q 014757 132 VVADPDLENAVKDANMLVFVTP--HQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCCVLM 207 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp--~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~v~~ 207 (419)
+..+++.+ ++++||+||+|+| ......++.++.+.++++++|++.+.|+.+. .+.+..+. ++.-.
T Consensus 72 ~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~---------~l~~~~~~~~r~~g~- 140 (295)
T PLN02545 72 IRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISIT---------RLASATQRPQQVIGM- 140 (295)
T ss_pred eEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---------HHHhhcCCCcceEEE-
Confidence 34555654 5789999999999 4667777888988888999998888777542 23333322 21111
Q ss_pred CcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014757 208 GANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 208 gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
.+..+... +....++.+...+.+.++++.++|+..|..+....|.
T Consensus 141 h~~~pp~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~ 185 (295)
T PLN02545 141 HFMNPPPI--MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDY 185 (295)
T ss_pred eccCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCc
Confidence 11111111 2222233332347889999999999999887776664
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-11 Score=113.13 Aligned_cols=190 Identities=13% Similarity=0.040 Sum_probs=123.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||.+++..|.++|... .++.+|+|++++ .+.+.+... ++..+.+++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~----~~i~v~~r~~~~------~~~l~~~~~------------~~~~~~~~~~~ 58 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADV----SEIIVSPRNAQI------AARLAERFP------------KVRIAKDNQAV 58 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCh----heEEEECCCHHH------HHHHHHHcC------------CceEeCCHHHH
Confidence 58999999999999999999988211 346788887655 444443210 13455677777
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhcCc
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVEKF 220 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g~~ 220 (419)
+.++|+||+|||++.+.++++++. +.++++||++..|+.. +.+++.++. ...++..|+.+.....| .
T Consensus 59 ~~~aDvVilav~p~~~~~vl~~l~--~~~~~~vis~~ag~~~---------~~l~~~~~~~~~~~r~~P~~~~a~~~g-~ 126 (258)
T PRK06476 59 VDRSDVVFLAVRPQIAEEVLRALR--FRPGQTVISVIAATDR---------AALLEWIGHDVKLVRAIPLPFVAERKG-V 126 (258)
T ss_pred HHhCCEEEEEeCHHHHHHHHHHhc--cCCCCEEEEECCCCCH---------HHHHHHhCCCCCEEEECCCChhhhCCC-C
Confidence 789999999999999999998873 4678999998877653 455555542 23566677765543333 2
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHH
Q 014757 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSK 300 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~ 300 (419)
+ .+.. +. +.++++|+..|-.++..+. . .+.+..+++ ...+.+...+.|+...++
T Consensus 127 t--~~~~--~~---~~~~~l~~~lG~~~~~~~e-~------~~d~~~a~~------------s~~a~~~~~~~~~~~~~~ 180 (258)
T PRK06476 127 T--AIYP--PD---PFVAALFDALGTAVECDSE-E------EYDLLAAAS------------ALMATYFGILETATGWLE 180 (258)
T ss_pred e--EecC--CH---HHHHHHHHhcCCcEEECCh-H------hccceeehh------------ccHHHHHHHHHHHHHHHH
Confidence 2 2222 22 4678888888877765322 1 111111110 012233357888899999
Q ss_pred HhcCCCCccchhc
Q 014757 301 LLFSSVKDSTFFE 313 (419)
Q Consensus 301 a~g~g~~~~~~~~ 313 (419)
+.| +++++...
T Consensus 181 ~~G--l~~~~a~~ 191 (258)
T PRK06476 181 EQG--LKRQKARA 191 (258)
T ss_pred HcC--CCHHHHHH
Confidence 994 78776654
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-11 Score=116.96 Aligned_cols=169 Identities=17% Similarity=0.132 Sum_probs=110.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH-------hcCcCCccCCCCccCCCe
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN-------RTNENVKYLPGIKLGKNV 132 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~-------~~g~~~~~~~~~~l~~~i 132 (419)
.+.||+|||+|.||..+|..|+.+| ++|++||++++. .+.+.+.+. +.+.. ....+.++
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG-------~~V~l~D~~~~~--~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~i 71 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHG-------LDVVAWDPAPGA--EAALRANVANAWPALERQGLA-----PGASPARL 71 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC-------CeEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCC-----hhhHHhhc
Confidence 4578999999999999999999999 999999998764 111111121 11111 01123456
Q ss_pred EecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceEE--E
Q 014757 133 VADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCCV--L 206 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~v--~ 206 (419)
..++++++++.+||+||.|+|. .....++.++.+.++++++|.|.|.++.. ..+.+.... ++.. .
T Consensus 72 ~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~---------s~la~~~~~p~R~~g~Hf 142 (321)
T PRK07066 72 RFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLP---------TDFYARATHPERCVVGHP 142 (321)
T ss_pred eecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCH---------HHHHHhcCCcccEEEEec
Confidence 7788898888999999999997 34666778899999999988777776643 233333332 2222 2
Q ss_pred eCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc-CcHHH
Q 014757 207 MGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAV-QDVEG 256 (419)
Q Consensus 207 ~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~-~di~~ 256 (419)
..|.+.. ....++.+...+.+.++++.+++...|...... .|..|
T Consensus 143 fnP~~~~-----pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pG 188 (321)
T PRK07066 143 FNPVYLL-----PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPG 188 (321)
T ss_pred CCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCcc
Confidence 2333211 111223333347899999999999998665544 56543
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=110.18 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=111.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||+|+|+|+|+||+++|.+|+++| |+|.+-+|+.+. + .+...+ .+. .+.. .+++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag-------~eV~igs~r~~~--~---~~a~a~~l~~------------~i~~-~~~~ 55 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG-------HEVIIGSSRGPK--A---LAAAAAALGP------------LITG-GSNE 55 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC-------CeEEEecCCChh--H---HHHHHHhhcc------------cccc-CChH
Confidence 789999999999999999999999 999999776553 1 122221 111 1223 3456
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc--CC-C-----CcccHHHHHHhHhCCceEEEeCcch
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV--KR-E-----GPCMISTLISEQLGVSCCVLMGANI 211 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~--~~-~-----~~~~~~~~i~~~~g~~~~v~~gp~~ 211 (419)
++.+.+|+||++||-..+.+++.++...+. |++||+.+|.+.. ++ + .....++.+.+.++.. -++..-++
T Consensus 56 dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~ 133 (211)
T COG2085 56 DAAALADVVVLAVPFEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNT 133 (211)
T ss_pred HHHhcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcc
Confidence 778899999999999999999999998776 8999999998531 11 0 1234567777777532 12211111
Q ss_pred --HHHHH----hcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 212 --ANEIA----VEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 212 --a~e~~----~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
+..+. .+.-..+.+++. |.+..+.+.++.+..|++....+.
T Consensus 134 i~a~~l~~~~~~~~~~~v~vagD-D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 134 IPAAVLADLAKPGGRRDVLVAGD-DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred cCHHHhccCCCcCCceeEEEecC-cHHHHHHHHHHHHhcCcceeeccc
Confidence 11111 111223445554 788889999999999988765443
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9e-11 Score=118.19 Aligned_cols=162 Identities=16% Similarity=0.201 Sum_probs=110.8
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.+++|+||| +|.||+.+|..|.++| ++|++|+|++. +++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G-------~~V~~~d~~~~---------------------------------~~~ 136 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG-------YQVRILEQDDW---------------------------------DRA 136 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC-------CeEEEeCCCcc---------------------------------hhH
Confidence 568999999 9999999999999999 99999997521 123
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHHH
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANEI 215 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e~ 215 (419)
++++.+||+||+|||.....++++++.+ ++++++|++++. +- ..+.+.+.+..+.+ ...+.||....
T Consensus 137 ~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~S-vK------~~~~~~~~~~~~~~fvg~HPm~G~~~~~-- 206 (374)
T PRK11199 137 EDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLTS-VK------NAPLQAMLAAHSGPVLGLHPMFGPDVGS-- 206 (374)
T ss_pred HHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECCC-cc------HHHHHHHHHhCCCCEEeeCCCCCCCCcc--
Confidence 4556789999999999999999999988 889999998853 21 11223333333222 12344554321
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHHh
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAGF 273 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g~ 273 (419)
..+. .+++....+.+.++++.++++..|.++...+.-.++...+. +.|+.+++.+.
T Consensus 207 ~~~~--~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~ 265 (374)
T PRK11199 207 LAKQ--VVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGL 265 (374)
T ss_pred cCCC--EEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 23444332567788999999999999888776666655444 45555555443
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=113.70 Aligned_cols=150 Identities=9% Similarity=0.055 Sum_probs=104.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-+||+|||+|+||.++|..|.++| ++|.++++.... . .+...+.| +... +.++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG-------~~Viv~~~~~~~----~-~~~a~~~G--------------v~~~-s~~e 55 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG-------LNVIVGLRKGGA----S-WKKATEDG--------------FKVG-TVEE 55 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC-------CeEEEEECcChh----h-HHHHHHCC--------------CEEC-CHHH
Confidence 378999999999999999999999 788776654321 1 23333333 2333 4667
Q ss_pred HhcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHH-H--
Q 014757 141 AVKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANE-I-- 215 (419)
Q Consensus 141 a~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e-~-- 215 (419)
++.++|+|++++|++ +...+++++.+.++++. +|++.-|+.+. .+...+|.+ -.++..|+.+.+ +
T Consensus 56 a~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~---------~~~~~~~~~~~VvrvmPn~p~~~vr~ 125 (314)
T TIGR00465 56 AIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIH---------FVQIVPPKDVDVVMVAPKGPGTLVRE 125 (314)
T ss_pred HHhcCCEEEEeCCcHhHHHHHHHHHHhhCCCCc-EEEEeCCccHh---------hccccCCCCCcEEEECCCCCcHHHHH
Confidence 788999999999998 77777788988887775 88888898763 334444433 366788887776 3
Q ss_pred ----HhcCceeEEEeecCCHHHHHHHHHHhCCCCcE
Q 014757 216 ----AVEKFSEATVGYRDNREIAEKWVQLFSTPYFM 247 (419)
Q Consensus 216 ----~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~ 247 (419)
+.|.+..+.+....+.+..+.+..+|+..|..
T Consensus 126 ~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 126 EYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred HhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 66654322233333566777888888877755
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-11 Score=107.91 Aligned_cols=166 Identities=19% Similarity=0.191 Sum_probs=101.4
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-------cCcCCccCCCCccCCCeEec
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-------TNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-------~g~~~~~~~~~~l~~~i~~~ 135 (419)
||+|||+|.||..+|..++.+| ++|++++++++. .++..+.+++ .+..... .-.....++..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-------~~V~l~d~~~~~--l~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-------YEVTLYDRSPEA--LERARKRIERLLDRLVRKGRLSQE-EADAALARISFT 70 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-------SEEEEE-SSHHH--HHHHHHHHHHHHHHHHHTTTTTHH-HHHHHHHTEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-------CcEEEEECChHH--HHhhhhHHHHHHhhhhhhccchhh-hhhhhhhhcccc
Confidence 7999999999999999999999 999999998764 1111222222 1110000 000112457888
Q ss_pred CCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ce--EEEeCc
Q 014757 136 PDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SC--CVLMGA 209 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~--~v~~gp 209 (419)
++++++. +||+||-|+|. ....+++.+|...+++++++.+.+.++.++ .+.+.++. ++ .-...|
T Consensus 71 ~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~---------~la~~~~~p~R~ig~Hf~~P 140 (180)
T PF02737_consen 71 TDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS---------ELAAALSRPERFIGMHFFNP 140 (180)
T ss_dssp SSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH---------HHHTTSSTGGGEEEEEE-SS
T ss_pred cCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH---------HHHhccCcCceEEEEecccc
Confidence 9998866 99999999997 567888999999999999999999887652 23332332 22 222345
Q ss_pred chHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 210 NIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 210 ~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
.+.. ....++.+...+.+.++++.++++..|.......|
T Consensus 141 ~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 141 PHLM-----PLVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp TTT-------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred cccC-----ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4322 12233444445788999999999988877665444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-11 Score=124.01 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=107.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHH-------HhcCcCCccCCCCccCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVI-------NRTNENVKYLPGIKLGKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i-------~~~g~~~~~~~~~~l~~~ 131 (419)
.+.+||+|||+|.||+.+|..|+++| ++|++|+++++.+ ++..+.+ .+.|..... .-.....+
T Consensus 3 ~~~~kV~VIGaG~MG~gIA~~la~aG-------~~V~l~d~~~e~l--~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~ 72 (503)
T TIGR02279 3 INVVTVAVIGAGAMGAGIAQVAASAG-------HQVLLYDIRAEAL--ARAIAGIEARLNSLVTKGKLTAE-ECERTLKR 72 (503)
T ss_pred CCccEEEEECcCHHHHHHHHHHHhCC-------CeEEEEeCCHHHH--HHHHHHHHHHHHHHHhcCCCCHH-HHHHHHhc
Confidence 35678999999999999999999999 9999999997651 1111111 122211000 00012235
Q ss_pred eEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc--e--EE
Q 014757 132 VVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS--C--CV 205 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~--~--~v 205 (419)
++.++++++ +.+||+||.|++. ...+.++.++.+.+++++++.+.+.++.++ .+.+.+..+ + ..
T Consensus 73 i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~---------~iA~~~~~p~r~~G~H 142 (503)
T TIGR02279 73 LIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSIT---------AIAAGLARPERVAGLH 142 (503)
T ss_pred cEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH---------HHHHhcCcccceEEEe
Confidence 677888875 6799999999997 345555677888888888888777766542 222222211 1 11
Q ss_pred EeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHH
Q 014757 206 LMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVE 255 (419)
Q Consensus 206 ~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~ 255 (419)
...|.... ....++-+...+.+.++++.++++..|.......|..
T Consensus 143 Ff~Papv~-----~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~p 187 (503)
T TIGR02279 143 FFNPAPVM-----ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTP 187 (503)
T ss_pred ccCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCC
Confidence 12222111 1222222223468899999999999988777666643
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-10 Score=110.31 Aligned_cols=150 Identities=9% Similarity=0.057 Sum_probs=101.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.++|+|||+|+||.++|..|.++| ++|.+++|+.+. . .+...+.| +.. .++++
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG-------~~Vvv~~r~~~~--s---~~~A~~~G--------------~~~-~s~~e 69 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSG-------VDVVVGLREGSK--S---WKKAEADG--------------FEV-LTVAE 69 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCC-------CEEEEEECCchh--h---HHHHHHCC--------------Cee-CCHHH
Confidence 468999999999999999999999 899988876543 0 12222222 223 36778
Q ss_pred HhcCCCEEEEccCcchHHHHH-HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-EEEeCcchHHH----
Q 014757 141 AVKDANMLVFVTPHQFMEGIC-KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-CVLMGANIANE---- 214 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-~v~~gp~~a~e---- 214 (419)
+++.+|+|++++|+....+++ +++.+.++++++| +...|+... ....+.+... .++..|+.+.+
T Consensus 70 aa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~---------~~~~~p~~~~~Vi~vaPn~Pg~~vr~ 139 (330)
T PRK05479 70 AAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIH---------FGQIVPPADVDVIMVAPKGPGHLVRR 139 (330)
T ss_pred HHhcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEE-EECCCCChh---------hceeccCCCCcEEEeCCCCCchhhhh
Confidence 889999999999998889998 7899999989888 666787653 2222223222 44455666544
Q ss_pred ---HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE
Q 014757 215 ---IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM 247 (419)
Q Consensus 215 ---~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~ 247 (419)
.+.|.+..+.+....+.+..+.+..+++..|..
T Consensus 140 ~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~ 175 (330)
T PRK05479 140 EYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGT 175 (330)
T ss_pred hhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 455654322133222366677777777766543
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=112.25 Aligned_cols=191 Identities=14% Similarity=0.051 Sum_probs=117.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHH-------HHhcCcCCccCCCCccCCCeE
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDV-------INRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~-------i~~~g~~~~~~~~~~l~~~i~ 133 (419)
+.||+|||+|.||..+|..|+.+| ++|++||++++.. +...+. +.+.|..... .......+++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G-------~~V~l~d~~~~~~--~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~ 74 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAG-------VDVLVFETTEELA--TAGRNRIEKSLERAVSRGKLTER-ERDAALARLR 74 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC-------CEEEEEECCHHHH--HHHHHHHHHHHHHHHhcccCChh-hHHHHHhCeE
Confidence 458999999999999999999999 9999999998751 111111 2222211000 0001224567
Q ss_pred ecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccC-CCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--EE
Q 014757 134 ADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKV-NGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--VL 206 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l-~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v~ 206 (419)
.+++++ ++.+||+||.|+|. .....++..+...+ ++++++++.+.++..+ .+...... ++. ..
T Consensus 75 ~~~~~~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~---------~la~~~~~~~r~~g~hf 144 (286)
T PRK07819 75 FTTDLG-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM---------KLAAATKRPGRVLGLHF 144 (286)
T ss_pred eeCCHH-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---------HHHhhcCCCccEEEEec
Confidence 788885 47999999999997 34555667788877 7899999988776542 22332222 211 12
Q ss_pred eCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhC-CCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHH
Q 014757 207 MGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFS-TPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKA 285 (419)
Q Consensus 207 ~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~-~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~ 285 (419)
..|.+.. + ...++.+...+.+.++++.+++. ..|..+....|..+- ...
T Consensus 145 ~~P~~~~----~-lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf-------------------------i~n 194 (286)
T PRK07819 145 FNPVPVL----P-LVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGF-------------------------VVN 194 (286)
T ss_pred CCCcccC----c-eEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCCh-------------------------HHH
Confidence 2232211 1 12334444447899999999976 466655544553221 112
Q ss_pred HHHHHHHHHHHHHHHH
Q 014757 286 AIMRIGLREMRAFSKL 301 (419)
Q Consensus 286 ~l~~~~~~E~~~la~a 301 (419)
.+....++|+.++.+.
T Consensus 195 Ri~~~~~~Ea~~ll~e 210 (286)
T PRK07819 195 ALLVPYLLSAIRMVES 210 (286)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3566677788877765
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-10 Score=118.63 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=105.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHH-------HHhcCcCCccCCCCccCCCe
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDV-------INRTNENVKYLPGIKLGKNV 132 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~-------i~~~g~~~~~~~~~~l~~~i 132 (419)
...||+|||+|.||..||..|+++| ++|++||++++.. ++..+. +.+.|.-... .......++
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG-------~~V~l~D~~~e~l--~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i 75 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAG-------HTVLLYDARAGAA--AAARDGIAARLAKLVEKGKLTAE-QADAALARL 75 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CeEEEEeCCHHHH--HHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCe
Confidence 4568999999999999999999999 9999999998751 111111 1222210000 000112346
Q ss_pred EecCCHHHHhcCCCEEEEccCc-chH-HHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ce--EEE
Q 014757 133 VADPDLENAVKDANMLVFVTPH-QFM-EGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SC--CVL 206 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~-~~~-~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~--~v~ 206 (419)
+.++++++ +.+||+||.|++. ..+ ..++.++...+++++++.+.+.+++++ .+.+.... ++ ...
T Consensus 76 ~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---------~la~~~~~p~r~~G~hf 145 (507)
T PRK08268 76 RPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---------AIAAALKHPERVAGLHF 145 (507)
T ss_pred EEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---------HHHhhcCCcccEEEEee
Confidence 77788876 6799999999997 344 445577888788899988777666642 23332221 11 112
Q ss_pred eCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHH
Q 014757 207 MGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVE 255 (419)
Q Consensus 207 ~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~ 255 (419)
..|.... ....++-+...+.+.++++.++++..|.......|..
T Consensus 146 f~Pa~v~-----~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~p 189 (507)
T PRK08268 146 FNPVPLM-----KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTP 189 (507)
T ss_pred cCCcccC-----eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCC
Confidence 2222211 1222222222478899999999998887766666543
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-10 Score=122.36 Aligned_cols=168 Identities=16% Similarity=0.098 Sum_probs=109.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||+|||+|.||.+++..|.++|. .++|++|+|+++. .+...+.|.. ....++.++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~-----~~~V~~~d~~~~~------~~~a~~~g~~------------~~~~~~~~~ 59 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGL-----AREVVAVDRRAKS------LELAVSLGVI------------DRGEEDLAE 59 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC-----CCEEEEEECChhH------HHHHHHCCCC------------CcccCCHHH
Confidence 3689999999999999999999882 1479999998765 4444443321 012345666
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceE-----EEeCcc----
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCC-----VLMGAN---- 210 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~-----v~~gp~---- 210 (419)
++.++|+||+|+|...++++++++.+.++++++|+++. ++. ..+.+.+++.++. ... .+.|+.
T Consensus 60 ~~~~aDvVilavp~~~~~~vl~~l~~~~~~~~ii~d~~-svk------~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~ 132 (735)
T PRK14806 60 AVSGADVIVLAVPVLAMEKVLADLKPLLSEHAIVTDVG-STK------GNVVDAARAVFGELPAGFVPGHPIAGSEKSGV 132 (735)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEcC-CCc------hHHHHHHHHhccccCCeEEecCCcCcCCcchh
Confidence 78899999999999999999999999888887776664 232 1122344444321 111 122222
Q ss_pred -hHH-HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHH
Q 014757 211 -IAN-EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVE 258 (419)
Q Consensus 211 -~a~-e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e 258 (419)
.+. +...+....++.....+.+..+.+.++|+..|.++...+.-.++.
T Consensus 133 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~~~hD~ 182 (735)
T PRK14806 133 HAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDVAHHDE 182 (735)
T ss_pred hhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhH
Confidence 111 344455444444333367788899999999998776654433433
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.9e-10 Score=101.36 Aligned_cols=274 Identities=15% Similarity=0.135 Sum_probs=156.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|+|+.||+|.||..++.+|.+.| |+|..||++++. ++.+...+. +..+++++.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-------hdvV~yD~n~~a------v~~~~~~ga--------------~~a~sl~el 53 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-------HDVVGYDVNQTA------VEELKDEGA--------------TGAASLDEL 53 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-------CeEEEEcCCHHH------HHHHHhcCC--------------ccccCHHHH
Confidence 78999999999999999999999 999999999876 777776552 234455443
Q ss_pred ---hcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce---EEEeCcchHHH
Q 014757 142 ---VKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC---CVLMGANIANE 214 (419)
Q Consensus 142 ---~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~---~v~~gp~~a~e 214 (419)
+.....|-++||.. .+.++++++++.|.++.+||+--|.--.+ +.+. .+.+.+. |.++ ....|+--+.
T Consensus 54 ~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~D--s~rr-~~~l~~k-gi~flD~GTSGG~~G~~- 128 (300)
T COG1023 54 VAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKD--SLRR-AKLLAEK-GIHFLDVGTSGGVWGAE- 128 (300)
T ss_pred HHhcCCCcEEEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHH--HHHH-HHHHHhc-CCeEEeccCCCCchhhh-
Confidence 44678999999985 89999999999999999999876643321 1111 1122221 4332 3334433222
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHH
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLRE 294 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E 294 (419)
...++++++ +.+..+++.++|+..... ++ +-..++ ..|...-.|+.+|-.---+.++++|
T Consensus 129 ----~G~~lMiGG--~~~a~~~~~pif~~lA~g----e~--Gyl~~G--------p~GsGHfvKMVHNGIEYGmM~a~aE 188 (300)
T COG1023 129 ----RGYCLMIGG--DEEAVERLEPIFKALAPG----ED--GYLYCG--------PSGSGHFVKMVHNGIEYGMMQAIAE 188 (300)
T ss_pred ----cCceEEecC--cHHHHHHHHHHHHhhCcC----cC--cccccc--------CCCcchhHHHHhccHHHHHHHHHHH
Confidence 223455554 789999999999853210 10 000000 0112222233455555567888999
Q ss_pred HHHHHHHhcCCCCccchhcccCCcceeecccCcccHHH---HHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHH
Q 014757 295 MRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKV---AEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVL 371 (419)
Q Consensus 295 ~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~---g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a 371 (419)
-..+.++.-...|.+.+.+.-.-+.++ |...+ .+.+.+ . ..++++.-.++ ..-||.+++. .|
T Consensus 189 GfelL~~s~fD~D~~~VA~vW~hGSVI------rSWLldLt~~Af~~-d--~~L~q~~g~v~--dSGEGrWTv~----~a 253 (300)
T COG1023 189 GFELLKNSPFDYDLEAVAEVWNHGSVI------RSWLLDLTAEAFKK-D--PDLDQISGRVS--DSGEGRWTVE----EA 253 (300)
T ss_pred HHHHHHhCCCCCCHHHHHHHHhCcchH------HHHHHHHHHHHHhh-C--CCHHHhcCeec--cCCCceeehH----HH
Confidence 999988873233333333321111111 11111 122222 1 12333321110 1236777744 44
Q ss_pred HHcCCCcCCcHHHH-HHHHHhCCCCHHHHHHHHhc
Q 014757 372 SHRGWLELFPLFAT-VHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 372 ~~~gv~~~~P~~~~-~~~~l~~~~~~~~~~~~~~~ 405 (419)
-+.|+ +.|++.. ++.-+....+ +.....+..
T Consensus 254 ldlgv--paPVia~al~~Rf~S~~~-d~f~~kvla 285 (300)
T COG1023 254 LDLGV--PAPVIALALMMRFRSRQD-DTFAGKVLA 285 (300)
T ss_pred HhcCC--CchHHHHHHHHHHhccch-hhHHHHHHH
Confidence 46788 9999876 4444443333 444444443
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.8e-10 Score=117.98 Aligned_cols=178 Identities=12% Similarity=0.099 Sum_probs=114.4
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+..+|||+|||+|.||..+|..|.+.| ++|++|+|+... +...+.| +...++
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G-------~~V~~~dr~~~~-------~~A~~~G--------------v~~~~d 100 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQG-------HTVLAHSRSDHS-------LAARSLG--------------VSFFLD 100 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCC-------CEEEEEeCCHHH-------HHHHHcC--------------CEEeCC
Confidence 455689999999999999999999999 899999987432 2222222 234556
Q ss_pred HHHHh-cCCCEEEEccCcchHHHHHHHHh-ccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-----EEEeCcc
Q 014757 138 LENAV-KDANMLVFVTPHQFMEGICKRLV-GKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-----CVLMGAN 210 (419)
Q Consensus 138 ~~ea~-~~aDlVilavp~~~~~~vl~~l~-~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-----~v~~gp~ 210 (419)
+++++ .++|+||+|||...+.++++++. +.++++++|+++.+ + ...+.+.+.+.++..+ ..+.||.
T Consensus 101 ~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~g~iVvDv~S-v------K~~~~~~l~~~l~~~~~~v~~HPMaG~e 173 (667)
T PLN02712 101 PHDLCERHPDVILLCTSIISTENVLKSLPLQRLKRNTLFVDVLS-V------KEFAKNLLLDYLPEDFDIICSHPMFGPQ 173 (667)
T ss_pred HHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCCCeEEEECCC-C------cHHHHHHHHHhcCCCCeEEeeCCcCCCc
Confidence 66644 56999999999999999999886 67888999998852 2 1223345555543221 2344555
Q ss_pred hHHHHHhcCceeEEEe----ec--CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHH---HHHHHHHHHHHH
Q 014757 211 IANEIAVEKFSEATVG----YR--DNREIAEKWVQLFSTPYFMVTAVQDVEGVELC---GTLKNVVAIAAG 272 (419)
Q Consensus 211 ~a~e~~~g~~~~~~~~----~~--~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~---~al~Ni~a~~~g 272 (419)
.......+.. ..+. +. ...+.++.+.++++..|.++...+.-.++... ..+.|+++.+..
T Consensus 174 ~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~ 242 (667)
T PLN02712 174 SAKHGWDGLR--FVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLE 242 (667)
T ss_pred cccchhccCc--EEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322223332 2222 11 01245677789999999988877655554443 345666555443
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-11 Score=104.38 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=63.9
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
....+||+|||+|.+|..++..|.++| |.|. +++|+++. .+..... . + .. ...
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag-------~~v~~v~srs~~s------a~~a~~~-~-----~------~~-~~~ 60 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAG-------HEVVGVYSRSPAS------AERAAAF-I-----G------AG-AIL 60 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTT-------SEEEEESSCHH-H------HHHHHC--------T------T-----
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCC-------CeEEEEEeCCccc------ccccccc-c-----c------cc-ccc
Confidence 556789999999999999999999999 7875 45676543 2333321 0 0 11 223
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhcc--CCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGK--VNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~--l~~~tiivs~~nGi~ 182 (419)
++++.+.++|++|++||+..+.++.++|... ..++++|+.++-..+
T Consensus 61 ~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 61 DLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp -TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred ccccccccCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 4566788999999999999999999999987 778999999986554
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=115.79 Aligned_cols=204 Identities=13% Similarity=0.145 Sum_probs=121.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...|||+|||+|.||..+|..|.+.| ++|.+|+|+... +...+.| +...++.
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G-------~~V~~~dr~~~~-------~~a~~~G--------------v~~~~~~ 418 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQG-------HTVLAYSRSDYS-------DEAQKLG--------------VSYFSDA 418 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCc-------CEEEEEECChHH-------HHHHHcC--------------CeEeCCH
Confidence 45689999999999999999999999 899999997431 2223322 2345677
Q ss_pred HHHhc-CCCEEEEccCcchHHHHHHHHhc-cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce-E----EEeCcch
Q 014757 139 ENAVK-DANMLVFVTPHQFMEGICKRLVG-KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC-C----VLMGANI 211 (419)
Q Consensus 139 ~ea~~-~aDlVilavp~~~~~~vl~~l~~-~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~-~----v~~gp~~ 211 (419)
++++. .+|+||+|||...+.++++++.. .++++++|++++.+-. ...+.+.+.++... . .+.|+..
T Consensus 419 ~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~-------~~~~~~~~~l~~~~~~v~~HPm~G~e~ 491 (667)
T PLN02712 419 DDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKE-------FPRNLFLQHLPQDFDILCTHPMFGPES 491 (667)
T ss_pred HHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccH-------HHHHHHHHhccCCCceEeeCCCCCccc
Confidence 66554 58999999999999999998875 5788999999864311 12344454443211 1 2233332
Q ss_pred HHHHHhcCc---eeEEEeec-CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHH---HHHHHHHHHHHhhhcCCCCccHH
Q 014757 212 ANEIAVEKF---SEATVGYR-DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCG---TLKNVVAIAAGFVDGLEMGNNTK 284 (419)
Q Consensus 212 a~e~~~g~~---~~~~~~~~-~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~---al~Ni~a~~~g~~~~~~~~~n~~ 284 (419)
........+ ....+++. ...+.++.+.+++...|.++...+.-.++...+ .+.|+++.+. ....+. .
T Consensus 492 ~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla~~L---~~~~~~---~ 565 (667)
T PLN02712 492 GKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMGRLL---EKLGLE---S 565 (667)
T ss_pred cccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHH---HHCCCc---c
Confidence 100000011 00122221 123556677799999998887765544444333 3444443222 111110 1
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 014757 285 AAIMRIGLREMRAFSKLLF 303 (419)
Q Consensus 285 ~~l~~~~~~E~~~la~a~g 303 (419)
..+...+++.+..+.+...
T Consensus 566 ~~~~~~gfr~l~~Li~Ria 584 (667)
T PLN02712 566 TPINTKGYETLLNLVENTA 584 (667)
T ss_pred cccccHHHHHHHHHHHhhc
Confidence 2345667777776666663
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.5e-09 Score=105.82 Aligned_cols=162 Identities=11% Similarity=0.084 Sum_probs=108.1
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..+||+|||. |.||+.+|..|.+. + ++|+.+|+..+ ...+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~-------~~V~g~D~~d~-------------------------------~~~~ 44 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQ-------LEVIGHDPADP-------------------------------GSLD 44 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCC-------CEEEEEcCCcc-------------------------------ccCC
Confidence 3579999999 99999999999875 5 78888886421 1234
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhcc---CCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcch
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGK---VNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANI 211 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~---l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~ 211 (419)
+++.+.+||+||+|||...+.++++++.++ ++++++|+++.. + + ..+.+.+.+. +.+ ...+.||..
T Consensus 45 ~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~iVtDVgS-v---K---~~i~~~~~~~-~~~fVG~HPMaG~E~ 116 (370)
T PRK08818 45 PATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQLWLDVTS-I---K---QAPVAAMLAS-QAEVVGLHPMTAPPK 116 (370)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCeEEEECCC-C---c---HHHHHHHHhc-CCCEEeeCCCCCCCC
Confidence 556688999999999999999999999875 789999988753 1 0 1122222221 111 123444432
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHH---HHHHHHH
Q 014757 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTL---KNVVAIA 270 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al---~Ni~a~~ 270 (419)
. ....|+...++.. . ..+..++++++++..|.++...+--.++...+.+ .|+.+++
T Consensus 117 s-~lf~g~~~iltp~-~-~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~ 175 (370)
T PRK08818 117 S-PTLKGRVMVVCEA-R-LQHWSPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLA 175 (370)
T ss_pred C-cccCCCeEEEeCC-C-chhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2345654433322 2 4555788899999999998887766666665554 4654443
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.5e-09 Score=100.74 Aligned_cols=156 Identities=19% Similarity=0.172 Sum_probs=103.9
Q ss_pred CeEEEECcch--------------------HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCc
Q 014757 62 SKVTVVGSGN--------------------WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVK 121 (419)
Q Consensus 62 mkI~IIGaG~--------------------mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~ 121 (419)
|||.|.|+|+ -|.+||.+|+++| |+|++|||+++..+. +..+.+.+.|
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAG-------heV~V~Drnrsa~e~-e~~e~LaeaG---- 68 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAG-------HDVVLAEPNREFMSD-DLWKKVEDAG---- 68 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCC-------CEEEEEeCChhhhhh-hhhHHHHHCC----
Confidence 7899999997 4889999999999 999999998653100 1123455544
Q ss_pred cCCCCccCCCeEecCCHHHHhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh-
Q 014757 122 YLPGIKLGKNVVADPDLENAVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL- 199 (419)
Q Consensus 122 ~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~- 199 (419)
+..++++.++++++|+||+|+|. .+++++++.+.+.+++|++||++++ +++ ..+...+++.+
T Consensus 69 ----------A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~ST-IsP-----~t~~~~~e~~l~ 132 (341)
T TIGR01724 69 ----------VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCT-VSP-----VVLYYSLEKILR 132 (341)
T ss_pred ----------CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCC-CCH-----HHHHHHHHHHhh
Confidence 34667788889999999999998 5688998889999999999999875 443 33444454422
Q ss_pred -C-CceEEE-eC----cchHHHHHhcCceeEEEeec-------CCHHHHHHHHHHhCCCCcEEEEc
Q 014757 200 -G-VSCCVL-MG----ANIANEIAVEKFSEATVGYR-------DNREIAEKWVQLFSTPYFMVTAV 251 (419)
Q Consensus 200 -g-~~~~v~-~g----p~~a~e~~~g~~~~~~~~~~-------~~~~~~~~l~~ll~~~g~~~~~~ 251 (419)
+ .+..+. .. |+...+ + .+++++. .+++.++++.++.++.+...+..
T Consensus 133 ~~r~d~~v~s~HP~~vP~~~~~---~---~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 133 LKRTDVGISSMHPAAVPGTPQH---G---HYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred cCccccCeeccCCCCCCCCCCC---c---eeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 2 111111 11 222111 1 1122221 36889999999998877665553
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-08 Score=96.80 Aligned_cols=134 Identities=17% Similarity=0.172 Sum_probs=101.6
Q ss_pred ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCC
Q 014757 92 DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGD 171 (419)
Q Consensus 92 ~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~ 171 (419)
++|.+++|++++ .+.+.+.- ++..+.+..+++.++|+||+|||+++++++++++.+.+.++
T Consensus 10 ~~I~v~~R~~e~------~~~l~~~~-------------g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~ 70 (245)
T TIGR00112 10 YDIIVINRSPEK------LAALAKEL-------------GIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKD 70 (245)
T ss_pred CeEEEEcCCHHH------HHHHHHHc-------------CcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCC
Confidence 789999998765 45554320 13455677777789999999999999999999999877778
Q ss_pred cEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014757 172 VEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 172 tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
++|||+.+|+.. +.+++.+|. ...++..|+.+..++.|. +.+..+...+.+..+.+.++|+..|..+++
T Consensus 71 ~~ivS~~agi~~---------~~l~~~~~~~~~ivR~mPn~~~~~~~g~-t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v 140 (245)
T TIGR00112 71 KLLISIAAGVTL---------EKLSQLLGGTRRVVRVMPNTPAKVGAGV-TAIAANANVSEEDRALVLALFKAVGEVVEL 140 (245)
T ss_pred CEEEEecCCCCH---------HHHHHHcCCCCeEEEECCChHHHHhCCe-EEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 999999999975 456666663 347788999988877763 444444444567788999999999988877
Q ss_pred cCcH
Q 014757 251 VQDV 254 (419)
Q Consensus 251 ~~di 254 (419)
.++.
T Consensus 141 ~E~~ 144 (245)
T TIGR00112 141 PEAL 144 (245)
T ss_pred CHHH
Confidence 6553
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.9e-09 Score=111.91 Aligned_cols=175 Identities=14% Similarity=0.081 Sum_probs=113.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCc--chH---HHHHHhcCcCCccCCCCccCCCeEe
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSG--EKL---TDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~--~~l---~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
.+.||+|||+|.||..+|..++.+| ++|+++|++++..+. +.+ .+...+.|.... ..-.....+++.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G-------~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~-~~~~~~~~~i~~ 383 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKG-------VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDG-AKMAGVLSSIRP 383 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCC-------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhHHHHHhCeEE
Confidence 4578999999999999999999999 999999998764110 011 111111221100 000012346788
Q ss_pred cCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--EEeC
Q 014757 135 DPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--VLMG 208 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v~~g 208 (419)
+++.++ +.+||+||-|++. ....+++.++.+.+++++++.+.|.+++++ .+.+.... ++. ....
T Consensus 384 ~~~~~~-~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~---------~la~~~~~p~r~~g~Hff~ 453 (715)
T PRK11730 384 TLDYAG-FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS---------LLAKALKRPENFCGMHFFN 453 (715)
T ss_pred eCCHHH-hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---------HHHhhcCCCccEEEEecCC
Confidence 888854 7999999999998 567888999999999999999998887652 23333332 221 1223
Q ss_pred cchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHH
Q 014757 209 ANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGV 257 (419)
Q Consensus 209 p~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~ 257 (419)
|.+.. ....++.+...+.+.++++.++++..|.......|..|-
T Consensus 454 P~~~~-----~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 454 PVHRM-----PLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred ccccc-----ceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 33211 111223333346788888999888888776666676553
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=98.87 Aligned_cols=172 Identities=16% Similarity=0.136 Sum_probs=108.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCc--chHH---HHHHhcCcCCccCCCCccCCCeEe
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSG--EKLT---DVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~--~~l~---~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
.++||+|||+|.||+.+|..++.+| ++|+++|++++.+++ ..+. +...+.|.- ....-.....+++.
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G-------~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l-~~~~~~~~l~~i~~ 73 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAG-------YDVVLKDISPEALERALAYIEKNLEKLVEKGKL-TEEEADAALARITP 73 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcC-------CceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCC-ChhhHHHHHhhccc
Confidence 4689999999999999999999988 999999998654110 1111 111111210 00000112345666
Q ss_pred cCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh--CCceE--EEeC
Q 014757 135 DPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL--GVSCC--VLMG 208 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~--g~~~~--v~~g 208 (419)
++++. ++.+||+||-+++. .-.+.++.++..++++++++-|.|++++++ .+.+.. +.++. -...
T Consensus 74 ~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it---------~ia~~~~rper~iG~HFfN 143 (307)
T COG1250 74 TTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT---------ELAEALKRPERFIGLHFFN 143 (307)
T ss_pred cCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH---------HHHHHhCCchhEEEEeccC
Confidence 67776 58999999999998 567788899999999999999999988763 222222 22221 2233
Q ss_pred cchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014757 209 ANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 209 p~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
|...- .+..++.+...+++.++++.++..+.|.......|.
T Consensus 144 P~~~m-----~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~ 184 (307)
T COG1250 144 PVPLM-----PLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDV 184 (307)
T ss_pred CCCcc-----eeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCC
Confidence 43221 111223333346788999999988877444443443
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-08 Score=109.23 Aligned_cols=175 Identities=11% Similarity=0.053 Sum_probs=113.4
Q ss_pred CcCeEEEECcchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCCCCCcchHHHHH----H---hcCcCCccCCCCccCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEETLPSGEKLTDVI----N---RTNENVKYLPGIKLGKN 131 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i----~---~~g~~~~~~~~~~l~~~ 131 (419)
.++||+|||+|.||+.+|..++ ++| ++|+++|.+++.. ++..+.+ . +.+.-.. ........+
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G-------~~V~l~d~~~~~l--~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 372 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAG-------IPVRIKDINPQGI--NNALKYAWKLLDKGVKRRHMTP-AERDNQMAL 372 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcC-------CeEEEEeCCHHHH--HHHHHHHHHHHHHHHHcCCCCH-HHHHHHHcC
Confidence 4578999999999999999998 589 9999999987541 1111111 1 1111000 000012246
Q ss_pred eEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--E
Q 014757 132 VVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--V 205 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v 205 (419)
++.+++.+ ++.+||+||-|+|. ....+++.++.+.+++++++.+.|.+++++ + +.+.+.. ++. -
T Consensus 373 i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--------~-la~~~~~p~r~~g~H 442 (699)
T TIGR02440 373 ITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--------Q-IAAAASRPENVIGLH 442 (699)
T ss_pred eEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--------H-HHHhcCCcccEEEEe
Confidence 77888886 57899999999998 567788899999999999999999888753 2 2232322 221 1
Q ss_pred EeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHH
Q 014757 206 LMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVEL 259 (419)
Q Consensus 206 ~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~ 259 (419)
...|.+.. ....++.+...+++.++++.++++..|.......|..|-..
T Consensus 443 ffnP~~~~-----~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGfi~ 491 (699)
T TIGR02440 443 YFSPVEKM-----PLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYV 491 (699)
T ss_pred cCCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccchHH
Confidence 22333211 11223333334788999999999988887776677655433
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-09 Score=110.00 Aligned_cols=223 Identities=17% Similarity=0.143 Sum_probs=128.2
Q ss_pred CeEEEECcchHHH-HHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcC-CccC-CC--CccCCCeEec-
Q 014757 62 SKVTVVGSGNWGS-VASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNEN-VKYL-PG--IKLGKNVVAD- 135 (419)
Q Consensus 62 mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~-~~~~-~~--~~l~~~i~~~- 135 (419)
|||.++|+|+||. .++..|+++| ++|++++++++. +++|+++|+- +... ++ .....++...
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g-------~~V~~vd~~~~~------v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~ 67 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG-------FEVTFVDVNQEL------IDALNKRKSYQVIVVGENEQVETVSNVSAIN 67 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC-------CeEEEEECCHHH------HHHHhcCCCeEEEEecCCCcEEEEeeEeeeC
Confidence 7999999999998 5588999999 999999987766 8999988742 1111 11 1111123333
Q ss_pred -CCHHH---HhcCCCEEEEccCcchHHHHHHHHhccCCCCc--------EEEEeecCcccCCCCcccHHHHHHhHh----
Q 014757 136 -PDLEN---AVKDANMLVFVTPHQFMEGICKRLVGKVNGDV--------EAISLIKGMEVKREGPCMISTLISEQL---- 199 (419)
Q Consensus 136 -~~~~e---a~~~aDlVilavp~~~~~~vl~~l~~~l~~~t--------iivs~~nGi~~~~~~~~~~~~~i~~~~---- 199 (419)
.+.++ .+.++|+|+++|+....+++...|.+.|.+.. .|+++.||+.+. ..+.+.+.+..
T Consensus 68 ~~~~~~~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng----~~L~~~V~~~~~~~~ 143 (381)
T PRK02318 68 SADEEAVIEAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGT----SFLKKHVLKALSEDE 143 (381)
T ss_pred CCCHHHHHHHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHH----HHHHHHHHHhCCHHH
Confidence 12232 34588999999999888888888777664433 789999999874 33333332221
Q ss_pred --------CCc--eEEEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCC-----cEEEEcCcHHHHHHHHHHH
Q 014757 200 --------GVS--CCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPY-----FMVTAVQDVEGVELCGTLK 264 (419)
Q Consensus 200 --------g~~--~~v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g-----~~~~~~~di~~~e~~~al~ 264 (419)
+.+ .+-+.+|.... .+. +.+. .++..+++.+.....+ ..+.+++|+...+|.|+..
T Consensus 144 ~~wi~~~~~f~~t~VDrI~P~~~~---~d~---~~v~---~E~f~~wviE~~~~~~~~p~~~~v~~~~dv~~~~~~Kl~~ 214 (381)
T PRK02318 144 KAWLEEHVGFVDSAVDRIVPAQKN---EDP---LDVT---VEPFSEWIVDKTQFKGALPKIKGMEYVDNLMPFIERKLFT 214 (381)
T ss_pred HHHHHhcCCCCCcHHhcCCCCCCc---cCC---cccc---cccceEEEEecccccCCCCCCCCcEEccCccHHHHHHHHh
Confidence 100 11122231100 000 0000 0111112211111111 1577889999999999976
Q ss_pred HHHHH----HHHhhhcCC-----CCccHHHHHHHHHHHHHHHHHHHhcCCCCccch
Q 014757 265 NVVAI----AAGFVDGLE-----MGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTF 311 (419)
Q Consensus 265 Ni~a~----~~g~~~~~~-----~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~ 311 (419)
|.... ..|...+.+ +.+.....++...+.|+..++.+.. |++++.+
T Consensus 215 ln~~ha~~A~~g~l~G~~tv~ea~~d~~~~~~v~~l~~E~~~v~~~~~-g~~~~~l 269 (381)
T PRK02318 215 VNTGHATTAYLGYLKGYKTIREAILDPSIRAVVKGALEESGAVLIKKY-GFDKEEH 269 (381)
T ss_pred ccHHHHHHHHHHHHcCcchHHHHHcCHHHHHHHHHHHHHHHhhcCCcC-CcCHHHH
Confidence 53221 223333332 2234556788889999999996432 4654433
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-08 Score=108.84 Aligned_cols=174 Identities=13% Similarity=0.083 Sum_probs=113.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH-------hcCcCCccCCCCccCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN-------RTNENVKYLPGIKLGKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~-------~~g~~~~~~~~~~l~~~ 131 (419)
..+.||+|||+|.||..+|..++.+| ++|++++++++.. ++..+.+. +.|.. ..........+
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G-------~~V~l~d~~~~~l--~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 380 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKG-------TPIVMKDINQHSL--DLGLTEAAKLLNKQVERGRI-TPAKMAGVLNG 380 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCC-------CeEEEEeCCHHHH--HHHHHHHHHHHHHHHHcCCC-ChhhHHHHHhC
Confidence 35679999999999999999999999 9999999987641 11111111 11110 00000011245
Q ss_pred eEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--E
Q 014757 132 VVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--V 205 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v 205 (419)
++.+++.+ .+.+||+||-|++. ....+++.++.+.+++++++.+.|.+++++ .+.+.... ++. -
T Consensus 381 i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~---------~ia~~~~~p~r~ig~H 450 (714)
T TIGR02437 381 ITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS---------LLAKALKRPENFCGMH 450 (714)
T ss_pred eEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---------HHHhhcCCcccEEEEe
Confidence 77788885 47899999999998 567888999999999999999998887752 23333322 221 1
Q ss_pred EeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHH
Q 014757 206 LMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGV 257 (419)
Q Consensus 206 ~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~ 257 (419)
...|.+.. ....++.+...+.+.++++.+++...|.......|..|-
T Consensus 451 ff~P~~~~-----~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (714)
T TIGR02437 451 FFNPVHRM-----PLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGF 497 (714)
T ss_pred cCCCcccC-----ceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccc
Confidence 22333211 111223333346788899999988888776666676543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-08 Score=108.76 Aligned_cols=174 Identities=14% Similarity=0.035 Sum_probs=111.2
Q ss_pred CcCeEEEECcchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCCCCCc--ch---HHHHHHhcCcCCccCCCCccCCCeE
Q 014757 60 HKSKVTVVGSGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEETLPSG--EK---LTDVINRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~~~~~--~~---l~~~i~~~g~~~~~~~~~~l~~~i~ 133 (419)
..+||+|||+|.||..+|..++ .+| ++|+++|++++..+. +. ..+...+.+.... ........+++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G-------~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~i~ 379 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAG-------LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKP-SERDKQMALIS 379 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcC-------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHhcEE
Confidence 4679999999999999999999 889 999999998754100 00 1111111111000 00001234678
Q ss_pred ecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--EEe
Q 014757 134 ADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--VLM 207 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v~~ 207 (419)
.+++.+ ++.+||+||-|++. ....+++.++.+.+++++++.+.|.+++++ .+.+.... ++. -..
T Consensus 380 ~~~~~~-~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~---------~la~~~~~p~r~ig~Hff 449 (708)
T PRK11154 380 GTTDYR-GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG---------QIAAAAARPEQVIGLHYF 449 (708)
T ss_pred EeCChH-HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---------HHHHhcCcccceEEEecC
Confidence 888885 57999999999998 567888999999999999999999888753 22232222 221 122
Q ss_pred CcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHH
Q 014757 208 GANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEG 256 (419)
Q Consensus 208 gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~ 256 (419)
.|.+.. ....++.+...+.+.++.+.+++...|.......|..|
T Consensus 450 ~P~~~~-----~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG 493 (708)
T PRK11154 450 SPVEKM-----PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG 493 (708)
T ss_pred CccccC-----ceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc
Confidence 333211 11223444444678888888888888876555556443
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=110.07 Aligned_cols=173 Identities=12% Similarity=0.047 Sum_probs=112.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-------cCcCCccCCCCccCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-------TNENVKYLPGIKLGKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-------~g~~~~~~~~~~l~~~ 131 (419)
..+.||+|||+|.||+.+|..++.+| ++|+++|++++.. ++..+.+.+ .|.- ..........+
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G-------~~V~l~d~~~~~l--~~~~~~i~~~l~~~~~~g~~-~~~~~~~~~~~ 402 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKG-------LKTVLKDATPAGL--DRGQQQVFKGLNKKVKRKKI-TSLERDSILSN 402 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCC-------CcEEEecCCHHHH--HHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhC
Confidence 45678999999999999999999999 9999999987651 111111211 1110 00000012346
Q ss_pred eEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--E
Q 014757 132 VVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--V 205 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v 205 (419)
++.+++.+ ++.+||+||-+|+. ....+++.++.+.+++++++.+.|.+++++ .+.+.... ++. -
T Consensus 403 i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~---------~la~~~~~p~r~ig~H 472 (737)
T TIGR02441 403 LTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK---------DIAAVSSRPEKVIGMH 472 (737)
T ss_pred eEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---------HHHhhcCCccceEEEe
Confidence 77888886 47899999999998 567788899999999999999998887652 23333322 221 1
Q ss_pred EeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHH
Q 014757 206 LMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEG 256 (419)
Q Consensus 206 ~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~ 256 (419)
...|.+.. ....++.+...+.+.++++.+++...|.......|..|
T Consensus 473 ff~P~~~m-----~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG 518 (737)
T TIGR02441 473 YFSPVDKM-----QLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG 518 (737)
T ss_pred ccCCcccC-----ceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC
Confidence 22333211 11223333334678888888888888877666666544
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.8e-08 Score=94.67 Aligned_cols=210 Identities=17% Similarity=0.075 Sum_probs=126.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+.|++||+|.||+-+|.+.+++| +.|.+++|++++ .+++-+..... .++..+.+++
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G-------~~VavyNRt~~k------td~f~~~~~~~---------k~i~~~~sie 59 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHG-------YTVAVYNRTTEK------TDEFLAERAKG---------KNIVPAYSIE 59 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcC-------ceEEEEeCCHHH------HHHHHHhCccC---------CCccccCcHH
Confidence 3467999999999999999999999 999999999887 56554432211 1233445565
Q ss_pred HH---hcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHH
Q 014757 140 NA---VKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEI 215 (419)
Q Consensus 140 ea---~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~ 215 (419)
|. ++...-|+++|++ ..++.++++|.|+|.++.++|+--|..-. +|.+...+ +.+ .|..+ +-.|-+-.++.
T Consensus 60 efV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~--DT~RR~~e-L~~-~Gi~F-vG~GVSGGEeG 134 (473)
T COG0362 60 EFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYK--DTIRRNKE-LSE-KGILF-VGMGVSGGEEG 134 (473)
T ss_pred HHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCc--hHHHHHHH-HHh-cCCeE-Eeccccccccc
Confidence 53 5678899999998 77899999999999999999998775543 22222221 222 13322 22222222222
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHH
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREM 295 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~ 295 (419)
+...|+ +++| + +.+.-+.++++|.....++. +++ ...|.+ .-|..+-.|..+|-.---=.+.++|+
T Consensus 135 A~~GPS-iMpG-G-~~eay~~v~pil~~IaAk~~--g~p-Cc~~iG--------~~GAGHfVKmVHNGIEYgDMQlIaE~ 200 (473)
T COG0362 135 ARHGPS-IMPG-G-QKEAYELVAPILTKIAAKVD--GEP-CCTWIG--------PDGAGHFVKMVHNGIEYGDMQLIAEA 200 (473)
T ss_pred cccCCC-cCCC-C-CHHHHHHHHHHHHHHHhhcC--CCC-ceeeEC--------CCCCCceeeeeecCchHHHHHHHHHH
Confidence 222243 3444 4 68888888888875332221 111 011100 00222233444554433446778888
Q ss_pred HHHHHHhcCCCCccch
Q 014757 296 RAFSKLLFSSVKDSTF 311 (419)
Q Consensus 296 ~~la~a~g~g~~~~~~ 311 (419)
..+.+... |...+.+
T Consensus 201 Y~ilk~~l-gls~~ei 215 (473)
T COG0362 201 YDILKDGL-GLSAEEI 215 (473)
T ss_pred HHHHHHhc-CCCHHHH
Confidence 88888743 5665544
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.3e-08 Score=93.92 Aligned_cols=166 Identities=14% Similarity=0.083 Sum_probs=98.0
Q ss_pred HHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCCCEEEEccCcc
Q 014757 76 ASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 76 lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~~ 155 (419)
+|..|.++|. .++|+.||++++. .+.-.+.|.. -...++ .+++.++|+||+|||..
T Consensus 1 ~A~aL~~~g~-----~~~v~g~d~~~~~------~~~a~~~g~~------------~~~~~~-~~~~~~~DlvvlavP~~ 56 (258)
T PF02153_consen 1 IALALRKAGP-----DVEVYGYDRDPET------LEAALELGII------------DEASTD-IEAVEDADLVVLAVPVS 56 (258)
T ss_dssp HHHHHHHTTT-----TSEEEEE-SSHHH------HHHHHHTTSS------------SEEESH-HHHGGCCSEEEE-S-HH
T ss_pred ChHHHHhCCC-----CeEEEEEeCCHHH------HHHHHHCCCe------------eeccCC-HhHhcCCCEEEEcCCHH
Confidence 5788999981 1456666666543 2333233421 123333 45689999999999999
Q ss_pred hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--c---eEEEeCc-----chHH-HHHhcCceeEE
Q 014757 156 FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--S---CCVLMGA-----NIAN-EIAVEKFSEAT 224 (419)
Q Consensus 156 ~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~---~~v~~gp-----~~a~-e~~~g~~~~~~ 224 (419)
.+.++++++.++++++++|+++.. + ...+.+.+++..+. . ...+.|| ..+. +.+.|+...++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~S-v------K~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~ 129 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGS-V------KAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILC 129 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S--------CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEE
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCC-C------CHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEe
Confidence 999999999999999999998753 2 12334555555541 2 2455566 2222 45567755455
Q ss_pred EeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHH
Q 014757 225 VGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAG 272 (419)
Q Consensus 225 ~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g 272 (419)
.....+.+.++.+.++++..|.++...+.-.++...+. +.++++.+..
T Consensus 130 p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~ 180 (258)
T PF02153_consen 130 PGEDTDPEALELVEELWEALGARVVEMDAEEHDRIMAYVSHLPHLLASALA 180 (258)
T ss_dssp ECTTS-HHHHHHHHHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443567889999999999998887755555554443 4555554433
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1 | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.6e-08 Score=82.52 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=75.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCC----ccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcc
Q 014757 253 DVEGVELCGTLKNVVAIAAGFVDGLEMG----NNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGR 328 (419)
Q Consensus 253 di~~~e~~~al~Ni~a~~~g~~~~~~~~----~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~r 328 (419)
|+....|.|++.|....+.+...+...+ +.....++...+.|+.+++++.|..++++.+.+. +
T Consensus 1 di~~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~~~~~~l~~E~~~va~a~G~~l~~~~~~~~------~------- 67 (125)
T PF08546_consen 1 DIQRERWEKLIFNAAINPLTALTGCTNGELLENPEARELIRALMREVIAVARALGIPLDPDDLEEA------I------- 67 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHH------H-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHHHHHHHHHHHHHHHHHHhhccCcHHHHHHH------H-------
Confidence 6788899999999765555555554433 2345579999999999999999743333222110 0
Q ss_pred cHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 329 NRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 329 n~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
..+-...+. ...+..+|+ .+|+.+|.+..+|.++++|+++|+ ++|.++++|++++.
T Consensus 68 -~~~~~~~~~-~~~SM~~D~----~~gr~tEid~i~G~vv~~a~~~gv--~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 68 -ERLIRSTPD-NRSSMLQDI----EAGRPTEIDYINGYVVRLAKKHGV--PTPVNETIYALVKA 123 (125)
T ss_dssp -HHHHHCTTT-T--HHHHHH----HTTB--SHHHTHHHHHHHHHHTT-----HHHHHHHHHHHH
T ss_pred -HHHHHhcCC-ccccHHHHH----HHcccccHHHHHHHHHHHHHHHCC--CCcHHHHHHHHHHH
Confidence 011111111 110124454 468999999999999999999999 99999999999874
|
1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B .... |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.6e-08 Score=92.10 Aligned_cols=199 Identities=13% Similarity=0.119 Sum_probs=123.3
Q ss_pred cccchhcccccccchhhhhhhhcccCCCCCCcccccccCCCCCCCC-CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCC
Q 014757 12 KQPFIRKRFPCFFHSLSLSSLFMAPAFEDNNSETLPSSFSSGSDDG-VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSF 90 (419)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~ 90 (419)
..|-+|..||.|..|.--+.++.|..-. ..-..|-+..-+. .....+|||||.|.||..+|..|.++|
T Consensus 7 s~p~l~~~~~t~~~~~p~~~~~~a~~~~-----~i~d~~~~~~s~~~~k~tl~IaIIGfGnmGqflAetli~aG------ 75 (480)
T KOG2380|consen 7 SPPNLRRNSPTFLISPPRSLRIRAIDAA-----QIFDYMVSEDSIEQWKATLVIAIIGFGNMGQFLAETLIDAG------ 75 (480)
T ss_pred CCCCcccCCCceeccCcHHHHHHhhhhh-----hhhhcccCcchhhhcccceEEEEEecCcHHHHHHHHHHhcC------
Confidence 3567888899887765444443331100 0001111111111 223358999999999999999999999
Q ss_pred CceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH-hcCCCEEEEccCcchHHHHHHHHhcc-C
Q 014757 91 HDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA-VKDANMLVFVTPHQFMEGICKRLVGK-V 168 (419)
Q Consensus 91 ~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea-~~~aDlVilavp~~~~~~vl~~l~~~-l 168 (419)
|.|...+|+. . .+.-+..|. ...+++.+. -+..|+|++||....++.++...-+. +
T Consensus 76 -h~li~hsRsd-y------ssaa~~yg~--------------~~ft~lhdlcerhpDvvLlctsilsiekilatypfqrl 133 (480)
T KOG2380|consen 76 -HGLICHSRSD-Y------SSAAEKYGS--------------AKFTLLHDLCERHPDVVLLCTSILSIEKILATYPFQRL 133 (480)
T ss_pred -ceeEecCcch-h------HHHHHHhcc--------------cccccHHHHHhcCCCEEEEEehhhhHHHHHHhcCchhh
Confidence 9999999876 3 122222221 122334333 35899999999999999999877665 7
Q ss_pred CCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-----eEEEeCcchHHHHHhcCceeEE---Eeec-CCHHHHHHHHH
Q 014757 169 NGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-----CCVLMGANIANEIAVEKFSEAT---VGYR-DNREIAEKWVQ 239 (419)
Q Consensus 169 ~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-----~~v~~gp~~a~e~~~g~~~~~~---~~~~-~~~~~~~~l~~ 239 (419)
+.+++++..+.--. ...+.+.+.+|.+ +..+.||...++-.+|.|-.+. ++.. .-.+.++.+.+
T Consensus 134 rrgtlfvdvlSvKe-------fek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fle 206 (480)
T KOG2380|consen 134 RRGTLFVDVLSVKE-------FEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLE 206 (480)
T ss_pred ccceeEeeeeecch-------hHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHH
Confidence 77899987753111 1134555666643 3456788866655566554221 1110 12688999999
Q ss_pred HhCCCCcEEEE
Q 014757 240 LFSTPYFMVTA 250 (419)
Q Consensus 240 ll~~~g~~~~~ 250 (419)
+|.+.|.+...
T Consensus 207 If~cegckmVe 217 (480)
T KOG2380|consen 207 IFACEGCKMVE 217 (480)
T ss_pred HHHhcCCeEEE
Confidence 99988876443
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-07 Score=86.90 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=113.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|+|++||+|.|..+++..+.+.|...+ +.+.....+... ....++..| ++.+.+..+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~---~~i~~s~~~~~~-----~~~~~~~~g--------------~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEA---NRIWASVQTERS-----LGLMFEALG--------------VKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCch---hheeeecCchhh-----hhhhhhcCC--------------ceeeechHHH
Confidence 689999999999999999999984332 333333331111 011234433 2233333667
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHhcCc
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEKF 220 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~g~~ 220 (419)
++.+|++++++|++.++.++.++.+.+..+++++++.-|+.. .-+.+.++.+ -.+...|+.+..++.|.
T Consensus 59 ~~~s~v~~~svKp~~i~~vls~~~~~~~~~~iivS~aaG~tl---------~~l~~~l~~~~rviRvmpNtp~~v~eg~- 128 (267)
T KOG3124|consen 59 LQASDVVFLSVKPQVIESVLSEIKPKVSKGKIIVSVAAGKTL---------SSLESKLSPPTRVIRVMPNTPSVVGEGA- 128 (267)
T ss_pred HhhccceeEeecchhHHHHhhcCccccccceEEEEEeecccH---------HHHHHhcCCCCceEEecCCChhhhhcCc-
Confidence 889999999999999999999998877789999999988764 2344445532 36677788888777775
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHH
Q 014757 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVE 255 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~ 255 (419)
+.+..+.....++.+.++++|...|+.....++..
T Consensus 129 sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~i 163 (267)
T KOG3124|consen 129 SVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCI 163 (267)
T ss_pred EEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhh
Confidence 34455554456777889999999999888776643
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.3e-08 Score=84.33 Aligned_cols=94 Identities=13% Similarity=0.187 Sum_probs=67.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.++|+|||.|+.|.+.|.+|.++| .+|.+-.|+... . .+..++.|. + ..+.+|
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG-------~~V~Vglr~~s~----s-~~~A~~~Gf--------------~-v~~~~e 56 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSG-------VNVIVGLREGSA----S-WEKAKADGF--------------E-VMSVAE 56 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC--------EEEEEE-TTCH----H-HHHHHHTT---------------E-CCEHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCC-------CCEEEEecCCCc----C-HHHHHHCCC--------------e-eccHHH
Confidence 468999999999999999999999 899999988652 0 344444442 2 246778
Q ss_pred HhcCCCEEEEccCcchHHHHH-HHHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPHQFMEGIC-KRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl-~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++.+|+|++.+|+....++. ++|.|.++++++++... |..
T Consensus 57 Av~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~~L~fah-Gfn 98 (165)
T PF07991_consen 57 AVKKADVVMLLLPDEVQPEVYEEEIAPNLKPGATLVFAH-GFN 98 (165)
T ss_dssp HHHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-EEEESS-SHH
T ss_pred HHhhCCEEEEeCChHHHHHHHHHHHHhhCCCCCEEEeCC-cch
Confidence 899999999999999999998 78999999998876543 443
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.8e-08 Score=94.57 Aligned_cols=94 Identities=15% Similarity=0.255 Sum_probs=73.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-|+|+|||+|.||..+|..|...| ++|.+|+|+++. .... +....+++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G-------~~V~~~d~~~~~------~~~~------------------~~~~~~l~ 193 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFG-------ATITAYDAYPNK------DLDF------------------LTYKDSVK 193 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEeCChhH------hhhh------------------hhccCCHH
Confidence 4468999999999999999999999 899999987643 1110 12345788
Q ss_pred HHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++.++|+|++++|.. +...++ +.+.+.+++++++|+...|-...
T Consensus 194 ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd 240 (330)
T PRK12480 194 EAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVIN 240 (330)
T ss_pred HHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccC
Confidence 8899999999999974 344444 56778889999999999987764
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=91.46 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=71.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|+||.++|.+|...| ++|.+|+|.... .+.....| ++. .+++
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G-------~~ViV~~r~~~s------~~~A~~~G--------------~~v-~sl~ 66 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSG-------VEVVVGVRPGKS------FEVAKADG--------------FEV-MSVS 66 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCc-------CEEEEEECcchh------hHHHHHcC--------------CEE-CCHH
Confidence 3468999999999999999999999 899999875322 22222222 223 3688
Q ss_pred HHhcCCCEEEEccCcchHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 140 NAVKDANMLVFVTPHQFMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++.||+|++++|....+.++ +++.+.++++++++.. -|..+
T Consensus 67 Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~-hgfni 110 (335)
T PRK13403 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFS-HGFNI 110 (335)
T ss_pred HHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEEC-CCcce
Confidence 8899999999999986667877 4688889988866543 36654
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.8e-07 Score=86.90 Aligned_cols=193 Identities=10% Similarity=0.046 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCC-----cchHHHHHH-------hcCcCCccCCCCccCCCeEecCC--
Q 014757 72 WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPS-----GEKLTDVIN-------RTNENVKYLPGIKLGKNVVADPD-- 137 (419)
Q Consensus 72 mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~-----~~~l~~~i~-------~~g~~~~~~~~~~l~~~i~~~~~-- 137 (419)
||+.+|..++.+| ++|+++|++++..+ .+...+.+. +.|...... -.....+++.+++
T Consensus 1 MG~giA~~~a~~G-------~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~ 72 (314)
T PRK08269 1 MGQGIALAFAFAG-------HDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQ-ADAVLARIAVVARDG 72 (314)
T ss_pred CcHHHHHHHHhCC-------CeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhh-HHHHHhCeEeecCcc
Confidence 7999999999999 99999999985310 011112221 112110000 0012245666654
Q ss_pred HHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--EEeCcch
Q 014757 138 LENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--VLMGANI 211 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v~~gp~~ 211 (419)
+.+++.+||+||.|++. .....++.++.+.+++++++.|.+.++.+ ..+.+.... ++. ....|.+
T Consensus 73 ~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~---------~~la~~~~~p~r~~g~Hf~~Pp~ 143 (314)
T PRK08269 73 AADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLV---------TDLQRHVAHPERFLNAHWLNPAY 143 (314)
T ss_pred hHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCH---------HHHHhhcCCcccEEEEecCCccc
Confidence 56778999999999997 44556678898989999999877766653 233333322 111 1122222
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHH
Q 014757 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIG 291 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~ 291 (419)
.. ....++.+...+.+.++++.+++...|..+....|..+ +....+....
T Consensus 144 ~~-----~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~G-------------------------fi~nri~~~~ 193 (314)
T PRK08269 144 LM-----PLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPG-------------------------YIVPRIQALA 193 (314)
T ss_pred cC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC-------------------------cchHHHHHHH
Confidence 11 11112222234788999999999988877766655322 2234567888
Q ss_pred HHHHHHHHHHhcCCCCccchhc
Q 014757 292 LREMRAFSKLLFSSVKDSTFFE 313 (419)
Q Consensus 292 ~~E~~~la~a~g~g~~~~~~~~ 313 (419)
++|+..++++. +++++++..
T Consensus 194 l~EAl~l~e~g--~~~~e~iD~ 213 (314)
T PRK08269 194 MNEAARMVEEG--VASAEDIDK 213 (314)
T ss_pred HHHHHHHHHhC--CCCHHHHHH
Confidence 99999999987 478877754
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.5e-07 Score=89.37 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=69.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-|+|+|||+|.||..+|..|++ .| .+|..|+++... .... . +...+++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g-------~~V~~~d~~~~~--------~~~~-~--------------~~~~~~l 194 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYG-------SDVVAYDPFPNA--------KAAT-Y--------------VDYKDTI 194 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-------CEEEEECCCccH--------hHHh-h--------------ccccCCH
Confidence 34789999999999999999954 45 678888776532 1111 1 2234578
Q ss_pred HHHhcCCCEEEEccCcch-HHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPHQF-MEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~-~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++++|+|++++|... .+.++ ++..+.+++++++|.+++|....
T Consensus 195 ~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd 242 (332)
T PRK08605 195 EEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVD 242 (332)
T ss_pred HHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccC
Confidence 888999999999999744 44333 44567788999999999987654
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.3e-06 Score=79.88 Aligned_cols=217 Identities=16% Similarity=0.180 Sum_probs=132.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc------cCCCeEe
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK------LGKNVVA 134 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~------l~~~i~~ 134 (419)
|+||+-||+|.+|++-...++..- .+.+|+++|.+..+ +.+++... .+.|.|+.. -..++-+
T Consensus 1 ~~kiccigagyvggptcavia~kc-----p~i~vtvvd~s~~r------i~~wnsd~-lpiyepgldevv~~crgknlff 68 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKC-----PDIEVTVVDISVPR------INAWNSDK-LPIYEPGLDEVVKQCRGKNLFF 68 (481)
T ss_pred CceEEEecCcccCCcchheeeecC-----CceEEEEEecCchH------hhcccCCC-CcccCCCHHHHHHHhcCCceee
Confidence 579999999999999988887664 12578899988765 56666543 345666652 1356778
Q ss_pred cCCHHHHhcCCCEEEEccCcc---------------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh
Q 014757 135 DPDLENAVKDANMLVFVTPHQ---------------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL 199 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~---------------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~ 199 (419)
.+|.+.++.++|+||++|... +.+++...|+..-..+++++--+. ++. ..++.++..+
T Consensus 69 stdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekst-vpv------~aaesi~~il 141 (481)
T KOG2666|consen 69 STDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKST-VPV------KAAESIEKIL 141 (481)
T ss_pred ecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeecc-ccc------hHHHHHHHHH
Confidence 899999999999999998642 577777778877666777765432 322 2345555544
Q ss_pred C-----CceEEEeCcchHHHHH----hcCceeEEEeecCCH---HHHHHHHHHhCCCCc-EEEEcCcHHHHHHHHHHHHH
Q 014757 200 G-----VSCCVLMGANIANEIA----VEKFSEATVGYRDNR---EIAEKWVQLFSTPYF-MVTAVQDVEGVELCGTLKNV 266 (419)
Q Consensus 200 g-----~~~~v~~gp~~a~e~~----~g~~~~~~~~~~~~~---~~~~~l~~ll~~~g~-~~~~~~di~~~e~~~al~Ni 266 (419)
. .++.+++.|.+..|.. .-.|..+.+|+.... ..++.+..++.+.-- .-.++.+....|++|+..|.
T Consensus 142 ~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaana 221 (481)
T KOG2666|consen 142 NHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANA 221 (481)
T ss_pred hcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHH
Confidence 3 3578999998765421 122456677776223 344555566654321 12234455566777766554
Q ss_pred HHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHh
Q 014757 267 VAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302 (419)
Q Consensus 267 ~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~ 302 (419)
+.. ... -..|.+.++..+--+|+..++.+.
T Consensus 222 fla-----qri-ssins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 222 FLA-----QRI-SSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred HHH-----HHH-hhhHHHHHHHHhcCCCHHHHHHHh
Confidence 310 000 012444444444445555555555
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=88.34 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=74.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|+.|..-| .+|..|+|.+.. .+.....+ +....+++
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG-------~~V~~~dr~~~~------~~~~~~~g--------------~~~~~~l~ 243 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFD-------VKLHYTDRHRLP------EEVEQELG--------------LTYHVSFD 243 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEECCCCCc------hhhHhhcC--------------ceecCCHH
Confidence 3478999999999999999999888 899999987633 12112211 23345788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++.||+|++++|. ..++.++ ++....+++++++|.+..|-..
T Consensus 244 ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV 289 (385)
T PRK07574 244 SLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIV 289 (385)
T ss_pred HHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchh
Confidence 889999999999995 6677777 4466778999999999877654
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-06 Score=78.58 Aligned_cols=166 Identities=10% Similarity=0.113 Sum_probs=101.4
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||. |.||..++..|.++| ++|+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g-------~~v~--------------------------------------------- 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG-------LGVY--------------------------------------------- 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC-------CEEE---------------------------------------------
Confidence 69999998 999999999999999 6543
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHH-HHhcC
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANE-IAVEK 219 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e-~~~g~ 219 (419)
+.+||+||+|+|...+.++++++.+ +++++.. + + ..+.+...+.+| ...+.||..+.. +. .
T Consensus 29 -~~~~DlVilavPv~~~~~~i~~~~~------~v~Dv~S-v---K---~~i~~~~~~~vg--~HPMfGp~~a~~~lf--~ 90 (197)
T PRK06444 29 -IKKADHAFLSVPIDAALNYIESYDN------NFVEISS-V---K---WPFKKYSGKIVS--IHPLFGPMSYNDGVH--R 90 (197)
T ss_pred -ECCCCEEEEeCCHHHHHHHHHHhCC------eEEeccc-c---C---HHHHHhcCCEEe--cCCCCCCCcCccccc--c
Confidence 1368999999999999999887652 5655532 1 1 111111111112 123456766542 12 1
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHH
Q 014757 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMR 296 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~ 296 (419)
..++.....+.+..+.++++++ |.++...+--.+++..+. +.++++.+... .+ ..+...+++.+.
T Consensus 91 -~~iv~~~~~~~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~ishLpH~ia~al~~---~~------~~~~t~~fr~l~ 158 (197)
T PRK06444 91 -TVIFINDISRDNYLNEINEMFR--GYHFVEMTADEHDLLMSEIMVKPYIISMILKD---IK------SDIKTGSFDKLL 158 (197)
T ss_pred -eEEEECCCCCHHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHHHHHHHHHHHHHcc---CC------CCCCCccHHHHH
Confidence 2222222235567788999998 667776655555554444 45554433221 11 234567899999
Q ss_pred HHHHHhcCCCCccc
Q 014757 297 AFSKLLFSSVKDST 310 (419)
Q Consensus 297 ~la~a~g~g~~~~~ 310 (419)
++++... +.+++-
T Consensus 159 ria~~~~-~~~p~l 171 (197)
T PRK06444 159 EVSEIKE-KENWEV 171 (197)
T ss_pred HHHHHhc-cCCHHH
Confidence 9998884 345543
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-06 Score=85.44 Aligned_cols=105 Identities=18% Similarity=0.353 Sum_probs=69.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||||+|||+|.||..+|..++..| . +|.++|++++...++ ...+..... . ......++.+++.+
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~-------~~ev~L~D~~~~~~~~~--~~dl~~~~~-~-----~~~~~~i~~~~d~~ 66 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKE-------LGDVVLFDIVEGVPQGK--ALDIAEAAP-V-----EGFDTKITGTNDYE 66 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-------CeEEEEEECCCchhHHH--HHHHHhhhh-h-----cCCCcEEEeCCCHH
Confidence 689999999999999999999988 4 899999987651111 111111100 0 00122455566775
Q ss_pred HHhcCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.+||+||+++.. ..++++++++.+.. ++.+++..+|.++
T Consensus 67 -~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d 123 (307)
T PRK06223 67 -DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVD 123 (307)
T ss_pred -HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 47899999999632 23566667777765 5677777787553
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=87.10 Aligned_cols=96 Identities=8% Similarity=0.123 Sum_probs=73.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|+.|...| .+|.+|+|++.. ......+ +. ..+++
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G-------~~V~~~d~~~~~-------~~~~~~~--------------~~-~~~l~ 199 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFG-------MRILYYSRTRKP-------EAEKELG--------------AE-YRPLE 199 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEECCCCCh-------hhHHHcC--------------CE-ecCHH
Confidence 4479999999999999999999999 899999987643 1111111 12 24678
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++..||+|++++|. ...+.++ ++....+++++++|.++.|-...
T Consensus 200 ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd 246 (333)
T PRK13243 200 ELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVD 246 (333)
T ss_pred HHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcC
Confidence 888999999999996 5566666 45667789999999998876553
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=87.52 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=75.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||.|.||..+|+.|..-| .+|..|+|.... .+.....+ +....++
T Consensus 197 L~gktVGIVG~G~IG~~vA~~L~afG-------~~V~~~d~~~~~------~~~~~~~g--------------~~~~~~l 249 (386)
T PLN03139 197 LEGKTVGTVGAGRIGRLLLQRLKPFN-------CNLLYHDRLKMD------PELEKETG--------------AKFEEDL 249 (386)
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCC-------CEEEEECCCCcc------hhhHhhcC--------------ceecCCH
Confidence 34479999999999999999999888 899999987533 12222212 2334578
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++..||+|++++|. ...+.++ +++...+++++++|.+..|-...
T Consensus 250 ~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVD 297 (386)
T PLN03139 250 DAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMD 297 (386)
T ss_pred HHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhh
Confidence 8888999999999995 6677776 45667789999999998775543
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-06 Score=83.64 Aligned_cols=104 Identities=12% Similarity=0.230 Sum_probs=71.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|.||+.+|..|+..| + +|.++|+.++...++ .-.+...+. .......++.+++.++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g-------~~~VvlvDi~~~l~~g~--a~d~~~~~~------~~~~~~~i~~t~d~~~ 66 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKE-------LADLVLLDVVEGIPQGK--ALDMYEASP------VGGFDTKVTGTNNYAD 66 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcC-------CCeEEEEeCCCChhHHH--HHhhhhhhh------ccCCCcEEEecCCHHH
Confidence 69999999999999999999998 5 899999976541111 001111110 0011235677788876
Q ss_pred HhcCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+||+||+++.. ..++++.+++.++. ++.+++..+|..+
T Consensus 67 -~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~d 122 (305)
T TIGR01763 67 -TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLD 122 (305)
T ss_pred -hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 7899999999983 23455566677764 6788888888554
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.1e-06 Score=84.39 Aligned_cols=96 Identities=16% Similarity=0.281 Sum_probs=73.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|+.|...| .+|.+|+|.++. ...... .....+++
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG-------~~V~~~~~~~~~------~~~~~~----------------~~~~~~l~ 185 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWG-------FPLRCWSRSRKS------WPGVQS----------------FAGREELS 185 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCCCC------CCCcee----------------ecccccHH
Confidence 3479999999999999999999989 899999986543 110000 01124677
Q ss_pred HHhcCCCEEEEccCc-chHHHHHH-HHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGICK-RLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl~-~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++.+||+|++++|. .+++.++. +....+++++++|.+..|-...
T Consensus 186 e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVd 232 (312)
T PRK15469 186 AFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVV 232 (312)
T ss_pred HHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccC
Confidence 889999999999996 66777764 4667789999999998876654
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-06 Score=81.79 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=64.9
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEE-EEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeE
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVV 133 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~ 133 (419)
.|.++||+|||+|.||..++..|.+. + +++. +|+|++++ .+.+.+. +. ..
T Consensus 3 ~m~~irIGIIG~G~IG~~~a~~L~~~~~~-------~el~aV~dr~~~~------a~~~a~~~g~-------------~~ 56 (271)
T PRK13302 3 SRPELRVAIAGLGAIGKAIAQALDRGLPG-------LTLSAVAVRDPQR------HADFIWGLRR-------------PP 56 (271)
T ss_pred CCCeeEEEEECccHHHHHHHHHHHhcCCC-------eEEEEEECCCHHH------HHHHHHhcCC-------------Cc
Confidence 35678999999999999999999874 4 6765 78887654 3443331 10 12
Q ss_pred ecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 134 ADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
..+++++.+.++|+|++|+|.....++...... .+..++..+
T Consensus 57 ~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~---aGk~Vi~~s 98 (271)
T PRK13302 57 PVVPLDQLATHADIVVEAAPASVLRAIVEPVLA---AGKKAIVLS 98 (271)
T ss_pred ccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHH---cCCcEEEec
Confidence 456788877889999999999888777666543 355444443
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-06 Score=78.16 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=70.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||.|.+|..+|..|..-| .+|..|+|.... .......+ + ...++
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG-------~~V~~~d~~~~~------~~~~~~~~--------------~-~~~~l 85 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFG-------MRVIGYDRSPKP------EEGADEFG--------------V-EYVSL 85 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--------EEEEEESSCHH------HHHHHHTT--------------E-EESSH
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCC-------ceeEEecccCCh------hhhccccc--------------c-eeeeh
Confidence 34478999999999999999999988 899999998753 12123222 2 23578
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++.+..||+|++++|. ...+.++ ++....++++.++|.+..|-...
T Consensus 86 ~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vd 133 (178)
T PF02826_consen 86 DELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVD 133 (178)
T ss_dssp HHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-
T ss_pred hhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhh
Confidence 8888999999999995 4444444 34556678999999998876553
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.5e-06 Score=80.85 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=100.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+...+.|+.||++.||..++.+.++.| +.|.+|+|+..+ ++..-++..+ +. .+....+
T Consensus 3 q~~~~digLiGLaVMGqnLiLN~~d~G-------f~v~~yNRT~sk------vD~flaneak-----~~----~i~ga~S 60 (487)
T KOG2653|consen 3 QTPKADIGLIGLAVMGQNLILNIADKG-------FTVCAYNRTTSK------VDEFLANEAK-----GT----KIIGAYS 60 (487)
T ss_pred CccccchhhhhHhhhhhhhhhcccccC-------ceEEEeccchHh------HHHHHHHhhc-----CC----cccCCCC
Confidence 344578999999999999999999999 999999999877 5555443211 00 1223466
Q ss_pred HHHH---hcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHH
Q 014757 138 LENA---VKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIAN 213 (419)
Q Consensus 138 ~~ea---~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~ 213 (419)
+++. ++....|++.||+ ..+...+++|.|+|.++.+||+--|.-- +++.+...+. .+ .|. ..+-+|-+-.+
T Consensus 61 ~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y--~dT~RR~~el-~k-~Gi-lfvG~GVSGGE 135 (487)
T KOG2653|consen 61 LEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEY--QDTERRCREL-AK-KGI-LFVGSGVSGGE 135 (487)
T ss_pred HHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccC--cchHHHHHHH-Hh-cCc-EEEecCccCcc
Confidence 7664 4568899999998 7788889999999999999998766443 2233332222 11 232 12223332223
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCC
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFST 243 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~ 243 (419)
|.++-.|+ +++++ +.+.-..++++|..
T Consensus 136 EGAR~GPS-lMpGg--~~~Awp~ik~ifq~ 162 (487)
T KOG2653|consen 136 EGARYGPS-LMPGG--SKEAWPHIKDIFQK 162 (487)
T ss_pred cccccCCc-cCCCC--ChHHHHHHHHHHHH
Confidence 32222233 34444 56666667776653
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.7e-06 Score=81.55 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=70.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||.|.||..+|+.|..-| .+|.+|+|+... + +.. ....++
T Consensus 120 L~gktvgIiG~G~IG~~vA~~l~afG-------~~V~~~~r~~~~-------~-----~~~-------------~~~~~l 167 (303)
T PRK06436 120 LYNKSLGILGYGGIGRRVALLAKAFG-------MNIYAYTRSYVN-------D-----GIS-------------SIYMEP 167 (303)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEECCCCcc-------c-----Ccc-------------cccCCH
Confidence 34479999999999999999887778 899999986422 0 100 113468
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++.+||+|++++|. .+.+.++ ++....+++++++|.++.|-...
T Consensus 168 ~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd 215 (303)
T PRK06436 168 EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVD 215 (303)
T ss_pred HHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccC
Confidence 8888999999999996 5666665 34556688999999998876543
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.8e-06 Score=80.80 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=59.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||||+|||+|.||..++..+.+.+. ..+ +.+++|++++ .+.+.+.. +....++.+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~-----~~elv~v~d~~~~~------a~~~a~~~-------------~~~~~~~~~ 56 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRI-----NAELYAFYDRNLEK------AENLASKT-------------GAKACLSID 56 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCC-----CeEEEEEECCCHHH------HHHHHHhc-------------CCeeECCHH
Confidence 5899999999999999999987630 044 5678887654 34443311 123557787
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+.+.++|+|++|+|+....+....+..
T Consensus 57 ell~~~DvVvi~a~~~~~~~~~~~al~ 83 (265)
T PRK13304 57 ELVEDVDLVVECASVNAVEEVVPKSLE 83 (265)
T ss_pred HHhcCCCEEEEcCChHHHHHHHHHHHH
Confidence 777889999999999888887766654
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.8e-06 Score=80.73 Aligned_cols=110 Identities=16% Similarity=0.370 Sum_probs=71.2
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
++..++||+|||+|.||+.+|..++..|+ .+|.++|++++.+.+ +.+...... .-...+.+++.++
T Consensus 2 ~~~~~~KI~IIGaG~vG~~ia~~la~~gl------~~i~LvDi~~~~~~~----~~ld~~~~~----~~~~~~~~I~~~~ 67 (321)
T PTZ00082 2 TMIKRRKISLIGSGNIGGVMAYLIVLKNL------GDVVLFDIVKNIPQG----KALDISHSN----VIAGSNSKVIGTN 67 (321)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCC------CeEEEEeCCCchhhH----HHHHHHhhh----hccCCCeEEEECC
Confidence 34556799999999999999999999883 489999999875211 122111110 0001122466667
Q ss_pred CHHHHhcCCCEEEEccCc---------------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPH---------------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~---------------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
|.+ ++.+||+||++.-. ..+.++++++.++. ++.+++..+|..+
T Consensus 68 d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~d 132 (321)
T PTZ00082 68 NYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLD 132 (321)
T ss_pred CHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 875 58999999997721 12455556666654 5667777777543
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.2e-07 Score=81.10 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-------cCcC--CccCCCC--c
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-------TNEN--VKYLPGI--K 127 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-------~g~~--~~~~~~~--~ 127 (419)
..+..|+|||+|.||+.+|+.-+.+| ++|.++++++..++ +..+.|.+ ++.. +....++ .
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg-------~~V~l~d~~~~aL~--~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~ 79 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSG-------LNVWLVDANEDALS--RATKAISSSLKRVAKKKKADDPVALEEFVDD 79 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcC-------CceEEecCCHHHHH--HHHHHHHHHHHHHHhhcccCChhhHHHHHHH
Confidence 34567999999999999999999999 99999999876521 11222222 1110 0000000 0
Q ss_pred cCCCeEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 128 LGKNVVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 128 l~~~i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
.-..++.+++.++++.++|+||-++-. .-.+.++++|....++++++.+-+..+..
T Consensus 80 ~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~l 137 (298)
T KOG2304|consen 80 TLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSL 137 (298)
T ss_pred HHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeH
Confidence 013456678888889999999998875 45667788888888888998887765543
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-06 Score=88.04 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=54.1
Q ss_pred CeEEEECcchHHHHHHH--HH----HHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 62 SKVTVVGSGNWGSVASK--LI----ASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~--~L----a~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
+||+|||+|.||.+++. .+ +.+| ++|.+||++++. .+.+..... .+......+.++..+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g-------~eV~L~Did~e~------l~~~~~~~~--~~~~~~~~~~~I~~t 65 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSG-------STIALMDIDEER------LETVEILAK--KIVEELGAPLKIEAT 65 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCC-------CEEEEECCCHHH------HHHHHHHHH--HHHHhcCCCeEEEEe
Confidence 58999999999998766 34 3345 799999999875 233322110 011111223457788
Q ss_pred CCHHHHhcCCCEEEEccCc
Q 014757 136 PDLENAVKDANMLVFVTPH 154 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~ 154 (419)
+|.++++.+||+||++++.
T Consensus 66 tD~~eal~~AD~Vi~ai~~ 84 (423)
T cd05297 66 TDRREALDGADFVINTIQV 84 (423)
T ss_pred CCHHHHhcCCCEEEEeeEe
Confidence 9988889999999999996
|
linked to 3D####ucture |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-06 Score=75.61 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=64.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++|+|+|+|.||..++..|.+.|. ++|++|+|+++. .+.+.+.... .. + . ....+.+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~------~~v~v~~r~~~~------~~~~~~~~~~-~~-----~--~-~~~~~~~ 76 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGA------AKIVIVNRTLEK------AKALAERFGE-LG-----I--A-IAYLDLE 76 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC------CEEEEEcCCHHH------HHHHHHHHhh-cc-----c--c-eeecchh
Confidence 35789999999999999999999852 789999998765 3333221100 00 0 0 1234555
Q ss_pred HHhcCCCEEEEccCcchH--HHHHHHHhccCCCCcEEEEeec
Q 014757 140 NAVKDANMLVFVTPHQFM--EGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~--~~vl~~l~~~l~~~tiivs~~n 179 (419)
+++.++|+||.|+|.... +.+... ...++++++++++..
T Consensus 77 ~~~~~~Dvvi~~~~~~~~~~~~~~~~-~~~~~~~~~v~D~~~ 117 (155)
T cd01065 77 ELLAEADLIINTTPVGMKPGDELPLP-PSLLKPGGVVYDVVY 117 (155)
T ss_pred hccccCCEEEeCcCCCCCCCCCCCCC-HHHcCCCCEEEEcCc
Confidence 667899999999998653 222111 123467888988853
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=73.69 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=102.8
Q ss_pred cCeEEEECcch--------------------HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCC
Q 014757 61 KSKVTVVGSGN--------------------WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENV 120 (419)
Q Consensus 61 ~mkI~IIGaG~--------------------mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~ 120 (419)
+|||+|.|+|+ -|+.||..++++| |||.+-+.+.+. ..++..+.+...|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAG-------HDVVLaePn~d~-~dd~~w~~vedAG--- 69 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAG-------HDVVLAEPNRDI-MDDEHWKRVEDAG--- 69 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcC-------CcEEeecCCccc-cCHHHHHHHHhcC---
Confidence 58999999997 3778999999999 999999887654 2223344555433
Q ss_pred ccCCCCccCCCeEecCCHHHHhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEE-eecCcccCCCCcccHHHHHHhH
Q 014757 121 KYLPGIKLGKNVVADPDLENAVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAIS-LIKGMEVKREGPCMISTLISEQ 198 (419)
Q Consensus 121 ~~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs-~~nGi~~~~~~~~~~~~~i~~~ 198 (419)
++.++|-.++++++++.++.+|- ...-.+.+.|.++++++.+|.. |+ +++ ..+..-++..
T Consensus 70 -----------V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT--~sp-----~vLy~~LE~~ 131 (340)
T COG4007 70 -----------VEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCT--VSP-----VVLYYSLEGE 131 (340)
T ss_pred -----------cEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEeccccc--Cch-----hHHHHHhhhh
Confidence 56666666788999999999997 4888899999999999988864 33 221 1222222222
Q ss_pred -------hCC-ceEEEeCcchHHHHHhcCceeEEEeec-------CCHHHHHHHHHHhCCCCcEEEEcC
Q 014757 199 -------LGV-SCCVLMGANIANEIAVEKFSEATVGYR-------DNREIAEKWVQLFSTPYFMVTAVQ 252 (419)
Q Consensus 199 -------~g~-~~~v~~gp~~a~e~~~g~~~~~~~~~~-------~~~~~~~~l~~ll~~~g~~~~~~~ 252 (419)
.|. .+..-.-|+..++ + .+++++. ..++.++++.++.++.|..++..+
T Consensus 132 Lr~kR~dVGvssmHPAgvPGtp~h---~---~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 132 LRTKREDVGVSSMHPAGVPGTPQH---G---HYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred hcCchhhcCccccCCCCCCCCCCC---c---eEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecC
Confidence 221 0111111222221 1 1233321 257899999999999998887754
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.3e-06 Score=85.90 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=73.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|..|...| .+|..|++.... +.....+ +...++++
T Consensus 137 ~gktvgIiG~G~IG~~vA~~l~~fG-------~~V~~~d~~~~~-------~~~~~~g--------------~~~~~~l~ 188 (525)
T TIGR01327 137 YGKTLGVIGLGRIGSIVAKRAKAFG-------MKVLAYDPYISP-------ERAEQLG--------------VELVDDLD 188 (525)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEECCCCCh-------hHHHhcC--------------CEEcCCHH
Confidence 3468999999999999999999888 899999985322 2222212 23345788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++..||+|++++|. ...+.++ ++....+++++++|.+..|-...
T Consensus 189 ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd 235 (525)
T TIGR01327 189 ELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIID 235 (525)
T ss_pred HHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeC
Confidence 889999999999996 4666666 34556788999999998876553
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-05 Score=78.16 Aligned_cols=107 Identities=17% Similarity=0.385 Sum_probs=70.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+||+|||+|.||..++..++..|. .++.++|++++...+ +.+...... .. ...+..+..+++.+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~------~~l~L~Di~~~~~~g----~~lDl~~~~-~~---~~~~~~i~~~~d~~ 69 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL------GDVVLYDVIKGVPQG----KALDLKHFS-TL---VGSNINILGTNNYE 69 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC------CeEEEEECCCccchh----HHHHHhhhc-cc---cCCCeEEEeCCCHH
Confidence 45799999999999999999998883 589999998765222 112111100 00 01122455567777
Q ss_pred HHhcCCCEEEEcc--Cc--------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVT--PH--------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilav--p~--------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.+||+||++. +. ..+.++.+.+.++ .++.+++..+|..+
T Consensus 70 -~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP~d 126 (319)
T PTZ00117 70 -DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNPLD 126 (319)
T ss_pred -HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHH
Confidence 579999999999 32 2255666666665 46777777788543
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.2e-06 Score=85.57 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=73.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|..|...| .+|..|+|.... +.....+ +... +++
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG-------~~V~~~d~~~~~-------~~~~~~g--------------~~~~-~l~ 189 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFG-------MKVIAYDPYISP-------ERAAQLG--------------VELV-SLD 189 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEECCCCCh-------hHHHhcC--------------CEEE-cHH
Confidence 3468999999999999999999988 899999986432 2222212 2233 688
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++.||+|++++|. ...+.++ .+....+++++++|.+..|-...
T Consensus 190 ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vd 236 (526)
T PRK13581 190 ELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIID 236 (526)
T ss_pred HHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeC
Confidence 888999999999996 5677766 45667789999999998876553
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.8e-06 Score=80.59 Aligned_cols=94 Identities=22% Similarity=0.301 Sum_probs=64.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...+|+|||+|.||..++..+.. .+. .+|++|+|++++ .+.+++.+++.+. ++....++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~------~~V~V~~Rs~~~--a~~~a~~~~~~g~------------~~~~~~~~ 183 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPI------KQVRVWGRDPAK--AEALAAELRAQGF------------DAEVVTDL 183 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCC------CEEEEEcCCHHH--HHHHHHHHHhcCC------------ceEEeCCH
Confidence 34689999999999999986654 332 789999999876 3344444433221 24456788
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
++++.++|+|+.|+++. +.++.. ..+++++.|..+
T Consensus 184 ~~av~~aDIVi~aT~s~--~pvl~~--~~l~~g~~i~~i 218 (314)
T PRK06141 184 EAAVRQADIISCATLST--EPLVRG--EWLKPGTHLDLV 218 (314)
T ss_pred HHHHhcCCEEEEeeCCC--CCEecH--HHcCCCCEEEee
Confidence 88889999999999975 333321 356778854433
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.1e-06 Score=79.36 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=65.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
+-++|+|+|+|.||..+|..|...| .+|++++|++++ .+...+.+.. .....++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G-------~~V~v~~R~~~~------~~~~~~~g~~------------~~~~~~l~ 204 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALG-------ARVFVGARSSAD------LARITEMGLI------------PFPLNKLE 204 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHCCCe------------eecHHHHH
Confidence 3468999999999999999999999 899999998654 2333332211 01123456
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+.+.++|+||.++|...+. +.....++++++++++..
T Consensus 205 ~~l~~aDiVint~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 205 EKVAEIDIVINTIPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred HHhccCCEEEECCChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 6778999999999975322 234455678899998864
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-05 Score=77.92 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=67.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..++|+|||+|.||..++..|...|. ++|++++|++++ .+.+.+. |. .+...++.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~------~~V~v~~r~~~r------a~~la~~~g~------------~~~~~~~~ 232 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGV------AEITIANRTYER------AEELAKELGG------------NAVPLDEL 232 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCC------CEEEEEeCCHHH------HHHHHHHcCC------------eEEeHHHH
Confidence 45799999999999999999988663 789999998765 3444332 21 11112345
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccC-CCCcEEEEeecCc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKV-NGDVEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l-~~~tiivs~~nGi 181 (419)
.+++.++|+||.|+++......+..+.... ..+.+++++...-
T Consensus 233 ~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 233 LELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred HHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 566788999999999866655454443322 3567888887543
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.7e-05 Score=68.82 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=69.6
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+ |.+|+.+|..|...+. ..++.++|+++++ .+..+..++.--. ..+.......+..+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-----~~ei~L~D~~~~~--~~g~a~Dl~~~~~--------~~~~~~~i~~~~~~ 65 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-----ADEIVLIDINEDK--AEGEALDLSHASA--------PLPSPVRITSGDYE 65 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-----SSEEEEEESSHHH--HHHHHHHHHHHHH--------GSTEEEEEEESSGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-----CCceEEeccCccc--ceeeehhhhhhhh--------hccccccccccccc
Confidence 79999999 9999999999999873 2679999998654 1111122221100 00011233334445
Q ss_pred HhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC
Q 014757 141 AVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG 200 (419)
Q Consensus 141 a~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g 200 (419)
++++||+||++.-. . .++++.+.+.++- ++.+++..+|.++ .+..++.+..|
T Consensus 66 ~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd-------~~t~~~~~~s~ 133 (141)
T PF00056_consen 66 ALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVD-------VMTYVAQKYSG 133 (141)
T ss_dssp GGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHH-------HHHHHHHHHHT
T ss_pred ccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHH-------HHHHHHHHhhC
Confidence 68999999999843 1 1333444555543 6778888888553 33455555433
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2e-05 Score=77.76 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=73.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-+++||||+|.+|+.+|..+..-| .+|..||+.... +.-... ......++++
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afg-------m~v~~~d~~~~~-------~~~~~~--------------~~~~~~~Ld~ 193 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFG-------MKVIGYDPYSPR-------ERAGVD--------------GVVGVDSLDE 193 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-------CeEEEECCCCch-------hhhccc--------------cceecccHHH
Confidence 468999999999999999999999 899999984432 111111 1234567889
Q ss_pred HhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 141 AVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
.+..||+|.+.+|- ...+.++ .+....++++.++|.+..|-...
T Consensus 194 lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 194 LLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence 99999999999995 6677776 33445678999999998886654
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5e-05 Score=64.43 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=74.1
Q ss_pred CeEEEECc-chHHHHHHHHHHHc-CCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|||+|+|+ |.||..++..+.+. + ++ |-.++|+++...++++.+.+. .. +.++.+++++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~-------~~lv~~v~~~~~~~~g~d~g~~~~-----------~~-~~~~~v~~~l 61 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG-------FELVGAVDRKPSAKVGKDVGELAG-----------IG-PLGVPVTDDL 61 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT-------EEEEEEEETTTSTTTTSBCHHHCT-----------SS-T-SSBEBS-H
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-------cEEEEEEecCCcccccchhhhhhC-----------cC-CcccccchhH
Confidence 79999999 99999999999984 4 66 456777763211222222111 11 2345678899
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGAN 210 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~ 210 (419)
++++..+|+||-++-+..+.+.++....+ +..+|.-++|...+ . .+.+++. .....++..|+
T Consensus 62 ~~~~~~~DVvIDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~-----~-~~~l~~~-a~~~~vl~a~N 123 (124)
T PF01113_consen 62 EELLEEADVVIDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDE-----Q-IDELEEL-AKKIPVLIAPN 123 (124)
T ss_dssp HHHTTH-SEEEEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHH-----H-HHHHHHH-TTTSEEEE-SS
T ss_pred HHhcccCCEEEEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHH-----H-HHHHHHH-hccCCEEEeCC
Confidence 98888899999999777777766665543 77888888888632 1 2344442 33356666665
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.00 E-value=3e-05 Score=77.46 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=72.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|+.|..-| .+|+.|+|.... +.....+........ +........+++
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG-------~~V~~~dr~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~L~ 221 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFG-------VKLLATRRSWTS-------EPEDGLLIPNGDVDD--LVDEKGGHEDIY 221 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCC-------CEEEEECCCCCh-------hhhhhhccccccccc--cccccCcccCHH
Confidence 3479999999999999999999888 899999986432 111100000000000 000000234788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++..||+|++++|. ...+.++ ++....++++.++|.+.-|-...
T Consensus 222 ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVd 268 (347)
T PLN02928 222 EFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLD 268 (347)
T ss_pred HHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccC
Confidence 889999999999995 5555555 34556678999999998876553
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2e-05 Score=76.45 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=57.3
Q ss_pred cCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+|||.| .||.+||.+|.++| +.|++|++.. .+++
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~g-------atVtv~~~~t----------------------------------~~l~ 197 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAH-------CSVTVVHSRS----------------------------------TDAK 197 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC-------CEEEEECCCC----------------------------------CCHH
Confidence 4689999996 99999999999999 9999997642 1355
Q ss_pred HHhcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.|++.. .+...+ +++|++||+++
T Consensus 198 e~~~~ADIVIsavg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 198 ALCRQADIVVAAVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred HHHhcCCEEEEecCChhcccHhh------ccCCcEEEEec
Confidence 6678899999999974 333332 67899999885
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.5e-05 Score=78.70 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=69.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|||||.|+||..+|..|...| .+|.+|++.... . . + .. ...+++
T Consensus 115 ~gktvGIIG~G~IG~~va~~l~a~G-------~~V~~~Dp~~~~------~----~-~-------------~~-~~~~l~ 162 (381)
T PRK00257 115 AERTYGVVGAGHVGGRLVRVLRGLG-------WKVLVCDPPRQE------A----E-G-------------DG-DFVSLE 162 (381)
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCC-------CEEEEECCcccc------c----c-c-------------Cc-cccCHH
Confidence 3468999999999999999999999 899999874321 0 0 0 01 124688
Q ss_pred HHhcCCCEEEEccCcc-----hHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPHQ-----FMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~~-----~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++.+||+|++++|-. ....++ ++....+++++++|.+..|-...
T Consensus 163 ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVd 213 (381)
T PRK00257 163 RILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213 (381)
T ss_pred HHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccC
Confidence 8888999999999963 355555 34556688999999998876654
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.2e-05 Score=73.94 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=67.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~~e 140 (419)
+||+|||+|.+|.++|..|+..|.. ++|.++|+++++ .+.++..++... .. .+..... ..+.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~-----~ei~l~D~~~~~--~~~~a~dL~~~~----~~----~~~~~~i~~~~~~- 64 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA-----DELVLIDINEEK--AEGEALDLEDAL----AF----LPSPVKIKAGDYS- 64 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEeCCcch--hhHhHhhHHHHh----hc----cCCCeEEEcCCHH-
Confidence 4899999999999999999998831 489999998876 222233332210 00 0011122 34444
Q ss_pred HhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+.+||+||+++... .++++.+.+.++ .++.+++..+|.++
T Consensus 65 ~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP~d 121 (306)
T cd05291 65 DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNPVD 121 (306)
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecChHH
Confidence 478999999999752 144445556554 45778888887543
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.2e-05 Score=74.90 Aligned_cols=102 Identities=19% Similarity=0.364 Sum_probs=66.0
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014757 64 VTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
|+|||+|.||..+|..|+..| . +|.++|++++...++.+ .+.... .......+++.++|.+ ++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~-------l~eV~L~Di~e~~~~g~~~--dl~~~~------~~~~~~~~I~~t~d~~-~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKE-------LGDVVLLDIVEGLPQGKAL--DISQAA------PILGSDTKVTGTNDYE-DI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCC-------CcEEEEEeCCCcHHHHHHH--HHHHhh------hhcCCCeEEEEcCCHH-Hh
Confidence 689999999999999999988 5 99999998765111110 111110 0000112455666765 48
Q ss_pred cCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 143 KDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 143 ~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+||+||+++.. ..++++++++.+.. ++.+++..+|..+
T Consensus 65 ~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~d 119 (300)
T cd01339 65 AGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLD 119 (300)
T ss_pred CCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 999999998732 23556667777765 5667777777443
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.2e-05 Score=78.96 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=70.6
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
...-++|||||.|+||+.+|+.|..-| .+|.+|++.... . ... . ...+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G-------~~V~~~dp~~~~--------~--~~~--------------~-~~~~ 160 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALG-------IKTLLCDPPRAD--------R--GDE--------------G-DFRS 160 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEECCcccc--------c--ccc--------------c-ccCC
Confidence 344579999999999999999999999 899999864221 0 000 0 1246
Q ss_pred HHHHhcCCCEEEEccCcch-----HHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 138 LENAVKDANMLVFVTPHQF-----MEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~-----~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++..||+|++.+|-.. ...++ ++....+++++++|...-|-...
T Consensus 161 L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVD 213 (378)
T PRK15438 161 LDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVD 213 (378)
T ss_pred HHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcC
Confidence 8888889999999999532 44444 44556788999999999886654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.6e-05 Score=74.48 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=66.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+|++|||+|.+|..++..|...| .+|++++|+++. .+.....|.. .....+..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-------a~V~v~~r~~~~------~~~~~~~G~~------------~~~~~~l~ 205 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-------ANVTVGARKSAH------LARITEMGLS------------PFHLSELA 205 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHHcCCe------------eecHHHHH
Confidence 3479999999999999999999999 899999998654 3333333321 11123456
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+.+.++|+||.++|...+ -++....++++.+|+++..
T Consensus 206 ~~l~~aDiVI~t~p~~~i---~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 206 EEVGKIDIIFNTIPALVL---TKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHhCCCCEEEECCChhhh---hHHHHHcCCCCcEEEEEcc
Confidence 677899999999997432 2334455678999998864
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.1e-05 Score=72.88 Aligned_cols=106 Identities=22% Similarity=0.308 Sum_probs=69.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||+|||+|.+|+.+|..|+..|.. .++.++|++++++.+ .+..+..-. . +. .. ..+..+.++++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~-----~el~LiD~~~~~~~g--~a~Dl~~~~--~-~~---~~-~~v~~~~dy~~ 68 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA-----DELVLVDVVEDKLKG--EAMDLQHGS--A-FL---KN-PKIEADKDYSV 68 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEeCCccHHHH--HHHHHHHhh--c-cC---CC-CEEEECCCHHH
Confidence 46999999999999999999988742 579999998765211 112222110 0 00 01 24666678876
Q ss_pred HhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+||+||++.-. . -++++.+.+.++ .++.+++..+|..+
T Consensus 69 -~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 124 (312)
T cd05293 69 -TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVD 124 (312)
T ss_pred -hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHH
Confidence 8999999996643 1 134444556565 56788888888543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.5e-05 Score=71.70 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=69.8
Q ss_pred EEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014757 64 VTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 64 I~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
|+|||+ |.||..++..|+..|. ....+|.++|++++++ +.....++..- ... ...++..++|+.+++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~---~~~~el~L~D~~~~~l--~~~~~dl~~~~------~~~-~~~~i~~~~d~~~~~ 68 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSV---LLAIELVLYDIDEEKL--KGVAMDLQDAV------EPL-ADIKVSITDDPYEAF 68 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCC---CcceEEEEEeCCcccc--hHHHHHHHHhh------hhc-cCcEEEECCchHHHh
Confidence 689999 9999999999998872 0115899999988762 21222232210 001 123567778877789
Q ss_pred cCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 143 KDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 143 ~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+||+||++.-. ..++++.+.+.++. ++.+++..+|..+
T Consensus 69 ~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d 123 (263)
T cd00650 69 KDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVD 123 (263)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 999999996632 23555666666654 6778877787543
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.8e-05 Score=66.99 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=61.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
....++.|||+|.+|.+.+..|++.|. .+|++++|+.++ .+++++.+.. .+. .+...++.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~------~~i~i~nRt~~r--a~~l~~~~~~--~~~----------~~~~~~~~ 69 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGA------KEITIVNRTPER--AEALAEEFGG--VNI----------EAIPLEDL 69 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTS------SEEEEEESSHHH--HHHHHHHHTG--CSE----------EEEEGGGH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC------CEEEEEECCHHH--HHHHHHHcCc--ccc----------ceeeHHHH
Confidence 345789999999999999999999993 569999999776 2333333311 000 12234555
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCC-CcEEEEee
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNG-DVEAISLI 178 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~-~tiivs~~ 178 (419)
.+.+.++|+||.|+|.... .+-+...+.... -++++++.
T Consensus 70 ~~~~~~~DivI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 70 EEALQEADIVINATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp CHHHHTESEEEE-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred HHHHhhCCeEEEecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 5667899999999997432 111122221111 14888885
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.1e-05 Score=62.90 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=63.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+||+|||+|.+|......+.+... ..++ .+++++++. .+...+.. ++...+|.++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~-----~~~v~~v~d~~~~~------~~~~~~~~-------------~~~~~~~~~~ 56 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSP-----DFEVVAVCDPDPER------AEAFAEKY-------------GIPVYTDLEE 56 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTT-----TEEEEEEECSSHHH------HHHHHHHT-------------TSEEESSHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC-----CcEEEEEEeCCHHH------HHHHHHHh-------------cccchhHHHH
Confidence 589999999999999988888731 1454 467777654 34443321 2346788888
Q ss_pred Hhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 141 AVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 141 a~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
.+. +.|+|++++|+....+.+...... +. -|.+-|.+..
T Consensus 57 ll~~~~~D~V~I~tp~~~h~~~~~~~l~~---g~-~v~~EKP~~~ 97 (120)
T PF01408_consen 57 LLADEDVDAVIIATPPSSHAEIAKKALEA---GK-HVLVEKPLAL 97 (120)
T ss_dssp HHHHTTESEEEEESSGGGHHHHHHHHHHT---TS-EEEEESSSSS
T ss_pred HHHhhcCCEEEEecCCcchHHHHHHHHHc---CC-EEEEEcCCcC
Confidence 776 799999999998777777665542 33 3444554543
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.8e-05 Score=73.37 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=70.4
Q ss_pred CcCeEEEECcchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-+++||||.|.+|..+|+.+. .-| .+|..++|.... +.....+ ++. .++
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fg-------m~V~~~~~~~~~-------~~~~~~~--------------~~~-~~l 194 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFN-------MPILYNARRHHK-------EAEERFN--------------ARY-CDL 194 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCC-------CEEEEECCCCch-------hhHHhcC--------------cEe-cCH
Confidence 4479999999999999999987 456 788888876432 1111111 222 478
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++.||+|++++|- ...+.++ .+....++++.++|.+..|-...
T Consensus 195 ~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVd 242 (323)
T PRK15409 195 DTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVD 242 (323)
T ss_pred HHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccC
Confidence 8889999999999995 5666666 34556788999999998876654
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=72.59 Aligned_cols=97 Identities=10% Similarity=0.150 Sum_probs=71.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-+++||||.|.+|.++|+.+.--| .+|..|+|.+.. +.-+.. +.+... +
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fg-------m~v~y~~~~~~~-------~~~~~~--------------~~~y~~-l 194 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFG-------MKVLYYDRSPNP-------EAEKEL--------------GARYVD-L 194 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCC-------CEEEEECCCCCh-------HHHhhc--------------Cceecc-H
Confidence 33479999999999999999998445 789999987642 111111 122333 8
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++.++.+|+|++.+|. .+.+.++ .+....++++.++|...-|-...
T Consensus 195 ~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VD 242 (324)
T COG1052 195 DELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVD 242 (324)
T ss_pred HHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 8889999999999996 6777776 34556688999999998876654
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.4e-05 Score=75.53 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=72.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|||||.|.+|..+|+.+..-| .+|..|++.+.. . .. .+....+++
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fG-------m~V~~~d~~~~~--------~--~~--------------~~~~~~~l~ 198 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLG-------MRVYFYDIEDKL--------P--LG--------------NARQVGSLE 198 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEECCCccc--------c--cC--------------CceecCCHH
Confidence 3468999999999999999999888 899999975421 0 00 122345788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++.||+|++.+|. ...+.++ ++....+++++++|.+..|-...
T Consensus 199 ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd 245 (409)
T PRK11790 199 ELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVD 245 (409)
T ss_pred HHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccC
Confidence 999999999999996 5676666 44556788999999998876554
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00015 Score=71.31 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=64.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.+|+++|..|+..|. -++|.++|++++++ +..+..+... .. +.+ +..+. +++.+ .
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~-----~~ev~l~D~~~~~~--~g~a~dl~~~--~~-~~~----~~~i~-~~d~~-~ 64 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGL-----ASEIVLVDINKAKA--EGEAMDLAHG--TP-FVK----PVRIY-AGDYA-D 64 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-----CCEEEEEECCchhh--hhHHHHHHcc--cc-ccC----CeEEe-eCCHH-H
Confidence 699999999999999999999882 15899999987651 1001112221 11 000 11222 45554 5
Q ss_pred hcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecC
Q 014757 142 VKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 142 ~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+++||+||++++.. .++++.+++..+- ++.+++..+|.
T Consensus 65 l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tNP 118 (308)
T cd05292 65 CKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTNP 118 (308)
T ss_pred hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 89999999999862 1444555666643 45666666663
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00019 Score=70.70 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=64.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+||+|||+|.+|+.+|..|+..|.. .++.++|++++++ +..+..+.... + +.. ...+. +.+.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~-----~el~L~D~~~~~~--~g~~~Dl~~~~--~-~~~----~~~i~-~~~~~ 69 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIA-----DELVIIDINKEKA--EGDAMDLSHAV--P-FTS----PTKIY-AGDYS 69 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEeCCCchh--HHHHHHHHhhc--c-ccC----CeEEE-eCCHH
Confidence 346999999999999999999988831 3799999987651 11122222210 0 000 11222 34454
Q ss_pred HHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 140 NAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 140 ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
.+++||+||++.-.. -++++++.+.++ .++.+++..+|..
T Consensus 70 -~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP~ 125 (315)
T PRK00066 70 -DCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPV 125 (315)
T ss_pred -HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCcH
Confidence 489999999976531 134444555554 3577787777744
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.8e-05 Score=77.11 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=69.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++|+|||.|++|.+-|..|...| ++|++--|........+-.+...+.| ... .+.+|
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSG-------vnVvvglr~~~id~~~~s~~kA~~dG--------------F~v-~~~~E 93 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSG-------LDISYALRKEAIAEKRASWRKATENG--------------FKV-GTYEE 93 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCcccc-------ceeEEeccccccccccchHHHHHhcC--------------Ccc-CCHHH
Confidence 378999999999999999999999 88886665531000000012222223 112 45778
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++..||+|++.+|+.....+.+++.+.++++.++.-. -|..
T Consensus 94 a~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fs-HGFn 134 (487)
T PRK05225 94 LIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYS-HGFN 134 (487)
T ss_pred HHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEec-CCce
Confidence 8999999999999987777778999999988876533 3444
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=71.78 Aligned_cols=114 Identities=19% Similarity=0.149 Sum_probs=68.5
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC--CCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET--LPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~--~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.+++||+|||+ |.+|+.+|..|...+........++.++|+++. ++.++ +..+... .. .+..++.++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~--a~Dl~~~--~~------~~~~~~~i~ 71 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGV--VMELDDC--AF------PLLAGVVIT 71 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCccccccee--ehhhhhh--hh------hhcCCcEEe
Confidence 45679999998 999999999999877421111127999998543 21111 1111110 00 000122344
Q ss_pred CCHHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+..+.+.+||+||++--.. .++++.+.|.++.+++.+++..+|.++
T Consensus 72 ~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 134 (326)
T PRK05442 72 DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN 134 (326)
T ss_pred cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence 44445689999999876431 144555666666556888888888654
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.8e-05 Score=71.25 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=74.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCC--CcchH---HHHHHhcCcCCccCC-CCccCCCeEe
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLP--SGEKL---TDVINRTNENVKYLP-GIKLGKNVVA 134 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~--~~~~l---~~~i~~~g~~~~~~~-~~~l~~~i~~ 134 (419)
.-||+|+|.|.+|+.+|..|+..| ++|.+||..++.. ..+.+ .+.+.+.|.....+. +..+ .-|..
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~G-------yqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eql-a~is~ 74 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSG-------YQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQL-ALISG 74 (313)
T ss_pred ccceeEeecccccchHHHHHhccC-------ceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHH-HHHhC
Confidence 458999999999999999999999 9999999987541 01111 122223332100000 0011 12446
Q ss_pred cCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 135 DPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++++.|++++|=.|--|+|. +-...+.++|...+.+.+|+-|.+..+.
T Consensus 75 t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~m 124 (313)
T KOG2305|consen 75 TTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFM 124 (313)
T ss_pred CccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccC
Confidence 78899999999999999998 4455666777776766666666555443
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00019 Score=70.86 Aligned_cols=112 Identities=20% Similarity=0.168 Sum_probs=67.4
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC--CCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL--PSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~--~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.+||+|||+ |.+|+.+|..|+..|...+....++.++|+.+.. +.++. -.+.. ... .+..++.++++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a--~Dl~~--~~~------~~~~~~~i~~~ 71 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVA--MELED--CAF------PLLAEIVITDD 71 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceee--hhhhh--ccc------cccCceEEecC
Confidence 469999999 9999999999998885322222379999985432 11111 11111 000 00112333334
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+.+.+||+||++--.. .++++.+.|.++-+++.+++..+|.++
T Consensus 72 ~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (322)
T cd01338 72 PNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN 132 (322)
T ss_pred cHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH
Confidence 345589999999986431 144455556665445778888888554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0024 Score=63.60 Aligned_cols=230 Identities=13% Similarity=0.107 Sum_probs=135.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCc--cC-CCC-ccCCCe---E
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVK--YL-PGI-KLGKNV---V 133 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~--~~-~~~-~l~~~i---~ 133 (419)
|.+|.|+|+|..+--+|..|.+.+. +.|-+.+|+..+ .+.+.+++++.+.... .- +.. .+.... .
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~------~~vGi~~R~S~r--Sq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~ 72 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGN------CRVGIVGRESVR--SQRFFEALARSDGLFEVSVQNEQHQALSGECTIDH 72 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccC------ceeeeecCcchh--HHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhH
Confidence 5689999999999999999998872 689999997655 5666777776321110 00 000 011111 1
Q ss_pred ecCCHHHHhcCCCEEEEccCcchHHHHHHHHhc-cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEE-----e
Q 014757 134 ADPDLENAVKDANMLVFVTPHQFMEGICKRLVG-KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVL-----M 207 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~-~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~-----~ 207 (419)
...+.++...+.|.+|+|||+++-.+|+++|.+ .|+.=..+|-++..++. ...+..++.+ .+.+..++ .
T Consensus 73 ~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS----~~lv~~~l~~-~~~~~EVISFStY~ 147 (429)
T PF10100_consen 73 VFQDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGS----HLLVKGFLND-LGPDAEVISFSTYY 147 (429)
T ss_pred hhcCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccch----HHHHHHHHHh-cCCCceEEEeeccc
Confidence 345677777789999999999999999988754 33333344444444542 1233334433 23222111 1
Q ss_pred Ccc------hHH-HHHhcCceeEEEeec-CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHH--------HHHHHHHHHHH
Q 014757 208 GAN------IAN-EIAVEKFSEATVGYR-DNREIAEKWVQLFSTPYFMVTAVQDVEGVELC--------GTLKNVVAIAA 271 (419)
Q Consensus 208 gp~------~a~-e~~~g~~~~~~~~~~-~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~--------~al~Ni~a~~~ 271 (419)
|.. ... .+..+....+-+|+. .+...+.+++.+|+..|+.+...+....+|-- .++.|=+++..
T Consensus 148 gdTr~~d~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~a 227 (429)
T PF10100_consen 148 GDTRWSDGEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNA 227 (429)
T ss_pred ccceeccCCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHH
Confidence 111 010 111122223455554 35678899999999999999999888777742 22334333221
Q ss_pred Hhh--hcC----CC---C--ccHHHHHHHHHHHHHHHHHHHhc
Q 014757 272 GFV--DGL----EM---G--NNTKAAIMRIGLREMRAFSKLLF 303 (419)
Q Consensus 272 g~~--~~~----~~---~--~n~~~~l~~~~~~E~~~la~a~g 303 (419)
-.. ..- |+ | ......-|...-.|+.++.++++
T Consensus 228 IF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~ 270 (429)
T PF10100_consen 228 IFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLG 270 (429)
T ss_pred HhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 111 111 11 1 12334557778899999999996
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00029 Score=59.34 Aligned_cols=98 Identities=19% Similarity=0.392 Sum_probs=62.1
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCHH
Q 014757 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDLE 139 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~~ 139 (419)
||+||| +|.+|..+...|++.- +.++ .+.+++++. ++. +........ +. ..+... .+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp------~~e~~~~~~~~~~~--g~~----~~~~~~~~~---~~---~~~~~~~~~~~ 62 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP------DFELVALVSSSRSA--GKP----LSEVFPHPK---GF---EDLSVEDADPE 62 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS------TEEEEEEEESTTTT--TSB----HHHTTGGGT---TT---EEEBEEETSGH
T ss_pred CEEEECCCCHHHHHHHHHHhcCC------CccEEEeeeecccc--CCe----eehhccccc---cc---cceeEeecchh
Confidence 799999 9999999999999864 1454 455555522 222 222110000 00 012222 2444
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+.++|+||+|+|+....+....+. ..+..||+++.-.-
T Consensus 63 -~~~~~Dvvf~a~~~~~~~~~~~~~~---~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 63 -ELSDVDVVFLALPHGASKELAPKLL---KAGIKVIDLSGDFR 101 (121)
T ss_dssp -HHTTESEEEE-SCHHHHHHHHHHHH---HTTSEEEESSSTTT
T ss_pred -HhhcCCEEEecCchhHHHHHHHHHh---hCCcEEEeCCHHHh
Confidence 4689999999999998888887774 46889999986553
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=72.37 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=70.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||.|.+|..+|..+..-| .+|..|+|.... + ..+ +. ..++
T Consensus 143 L~gktvGIiG~G~IG~~vA~~~~~fg-------m~V~~~d~~~~~-------~---~~~--------------~~-~~~l 190 (311)
T PRK08410 143 IKGKKWGIIGLGTIGKRVAKIAQAFG-------AKVVYYSTSGKN-------K---NEE--------------YE-RVSL 190 (311)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhcC-------CEEEEECCCccc-------c---ccC--------------ce-eecH
Confidence 34578999999999999999998777 789999885321 0 001 11 2468
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++.||+|++++|- ...+.++ ++....++++.++|.+.-|-...
T Consensus 191 ~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVD 238 (311)
T PRK08410 191 EELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVN 238 (311)
T ss_pred HHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccC
Confidence 8889999999999995 5666666 34556678999999998876654
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=61.71 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=62.2
Q ss_pred eEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEE-ecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCH
Q 014757 63 KVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMW-VFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDL 138 (419)
Q Consensus 63 kI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~-~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~ 138 (419)
||+|+|+ |.+|..++..|.+. + +++..+ +++++. + +.+...+.... ..... ... .+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~-------~~l~av~~~~~~~--~----~~~~~~~~~~~---~~~~~---~~~~~~~ 61 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD-------FEVVALAASARSA--G----KRVSEAGPHLK---GEVVL---ELEPEDF 61 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC-------ceEEEEEechhhc--C----cCHHHHCcccc---ccccc---ccccCCh
Confidence 6999995 99999999999885 4 666655 544332 1 12222111110 00000 011 222
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+ ..++|+||+|+|+....+++..+.+.+.+|+++|++++-+.
T Consensus 62 ~--~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 62 E--ELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred h--hcCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCcccc
Confidence 2 24799999999998888877766666778999999986443
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0001 Score=71.68 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=56.7
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEe-cCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWV-FEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~-r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
..-++|+||| .|.||.+||.+|.++| +.|++|+ |++
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g-------~tVtv~~~rT~----------------------------------- 193 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAAN-------ATVTIAHSRTR----------------------------------- 193 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCC-------CEEEEECCCCC-----------------------------------
Confidence 3446899999 9999999999999999 9999995 432
Q ss_pred CHHHHhcCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEEee
Q 014757 137 DLENAVKDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++++++.||+||.|++... +++. ++++|++||++.
T Consensus 194 ~l~e~~~~ADIVIsavg~~~~v~~~------~lk~GavVIDvG 230 (296)
T PRK14188 194 DLPAVCRRADILVAAVGRPEMVKGD------WIKPGATVIDVG 230 (296)
T ss_pred CHHHHHhcCCEEEEecCChhhcchh------eecCCCEEEEcC
Confidence 23456678999999999744 3332 277899999874
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.7e-05 Score=73.19 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=64.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+++|||+|.+|...+..|.... . -.+|.+|+|++++ .+.+++.+++.+ ..+....+++
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~-~----~~~v~V~~r~~~~--~~~~~~~~~~~g------------~~v~~~~~~~ 187 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVF-D----LEEVSVYCRTPST--REKFALRASDYE------------VPVRAATDPR 187 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC-C----CCEEEEECCCHHH--HHHHHHHHHhhC------------CcEEEeCCHH
Confidence 3468999999999999777765432 0 1789999999876 333334443222 1245678899
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++++++|+|++|||+.. .++. ..++++|+.|..+.
T Consensus 188 eav~~aDiVitaT~s~~--P~~~--~~~l~~g~~v~~vG 222 (325)
T TIGR02371 188 EAVEGCDILVTTTPSRK--PVVK--ADWVSEGTHINAIG 222 (325)
T ss_pred HHhccCCEEEEecCCCC--cEec--HHHcCCCCEEEecC
Confidence 99999999999999743 2221 23457787776553
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00014 Score=71.81 Aligned_cols=91 Identities=13% Similarity=0.152 Sum_probs=69.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.+|..+|+.+..-| .+|..|+|.... +. .. ..+++
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fg-------m~V~~~~~~~~~-------~~-------------------~~-~~~l~ 192 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFG-------MRVLIGQLPGRP-------AR-------------------PD-RLPLD 192 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCC-------CEEEEECCCCCc-------cc-------------------cc-ccCHH
Confidence 3468999999999999999998777 789989875321 00 00 13678
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++.||+|++++|- ...+.++ ++....++++.++|.+.-|-...
T Consensus 193 ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVd 239 (317)
T PRK06487 193 ELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVD 239 (317)
T ss_pred HHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccC
Confidence 889999999999995 5666666 34556678999999998876554
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0001 Score=69.12 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=65.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh--cCcCCccCCCCccCCCeEe-cCC-
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR--TNENVKYLPGIKLGKNVVA-DPD- 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~--~g~~~~~~~~~~l~~~i~~-~~~- 137 (419)
|+|.|+|+|.+|..+|..|.+.| |+|.+++++++. ++.... ...+ .+.. .++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-------~~Vv~Id~d~~~------~~~~~~~~~~~~-----------~v~gd~t~~ 56 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-------HNVVLIDRDEER------VEEFLADELDTH-----------VVIGDATDE 56 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-------CceEEEEcCHHH------HHHHhhhhcceE-----------EEEecCCCH
Confidence 78999999999999999999999 999999999865 444222 1110 0111 122
Q ss_pred --HHHH-hcCCCEEEEccCcchHHHHHHHHhcc-CCCCcEEEEeec
Q 014757 138 --LENA-VKDANMLVFVTPHQFMEGICKRLVGK-VNGDVEAISLIK 179 (419)
Q Consensus 138 --~~ea-~~~aDlVilavp~~~~~~vl~~l~~~-l~~~tiivs~~n 179 (419)
++++ +.++|+++.++....+..++-.+... +....++.-..+
T Consensus 57 ~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 57 DVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred HHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 2333 56899999999998888888777643 444455555443
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=68.52 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=72.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||+|||.|+=|.+=|.+|.++| .+|++--|.... + .+.-.+.| .++ -+.+|
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSG-------lnViiGlr~g~~-s----~~kA~~dG--------------f~V-~~v~e 70 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSG-------LNVIIGLRKGSS-S----WKKAKEDG--------------FKV-YTVEE 70 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcC-------CcEEEEecCCch-h----HHHHHhcC--------------CEe-ecHHH
Confidence 358999999999999999999999 788877765443 0 22233333 222 45778
Q ss_pred HhcCCCEEEEccCcchHHHHHH-HHhccCCCCcEEEEeecCccc
Q 014757 141 AVKDANMLVFVTPHQFMEGICK-RLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~-~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++.+|+|++-+|+....++.+ .|.|.|+++..+. .+-|+.+
T Consensus 71 a~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~G~aL~-FaHGfNi 113 (338)
T COG0059 71 AAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALG-FAHGFNI 113 (338)
T ss_pred HhhcCCEEEEeCchhhHHHHHHHHhhhhhcCCceEE-eccccce
Confidence 8999999999999999999997 8999999888554 4446654
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00014 Score=71.41 Aligned_cols=93 Identities=9% Similarity=0.040 Sum_probs=64.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...+++|||+|.+|...+..+.. .+. .+|.+|+|++++ .+.+++.+.+.+. .+. ..+.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~------~~v~v~~r~~~~--a~~~a~~~~~~~~------------~~~-~~~~ 182 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPV------RRVWVRGRTAAS--AAAFCAHARALGP------------TAE-PLDG 182 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC------CEEEEEcCCHHH--HHHHHHHHHhcCC------------eeE-ECCH
Confidence 34689999999999999999975 342 579999999876 3334444432110 122 4677
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++++.++|+||.|||+.. .++. ..+++|+.|..+.
T Consensus 183 ~~av~~aDiVitaT~s~~--Pl~~---~~~~~g~hi~~iG 217 (304)
T PRK07340 183 EAIPEAVDLVVTATTSRT--PVYP---EAARAGRLVVAVG 217 (304)
T ss_pred HHHhhcCCEEEEccCCCC--ceeC---ccCCCCCEEEecC
Confidence 778899999999999854 2332 2357888776653
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00035 Score=68.69 Aligned_cols=104 Identities=15% Similarity=0.321 Sum_probs=64.8
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC--CCCCcc--hHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE--TLPSGE--KLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~--~~~~~~--~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|||+|+|+ |.+|..++..|+..|+. .+|.+++|++ +++.++ ++.+.+...+ ....+..++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~-----~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~----------~~~~i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV-----KEINLISRPKSLEKLKGLRLDIYDALAAAG----------IDAEIKISS 65 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-----CEEEEEECcccccccccccchhhhchhccC----------CCcEEEECC
Confidence 79999998 99999999999999831 3699999954 221111 1111111100 011345556
Q ss_pred CHHHHhcCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+ .+.++|+||+|+.. ..++++.+.+.+.. ++.+++..+|.++
T Consensus 66 d~~-~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd 125 (309)
T cd05294 66 DLS-DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD 125 (309)
T ss_pred CHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence 665 48999999999963 12444555566554 5667777777554
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00016 Score=71.73 Aligned_cols=93 Identities=13% Similarity=0.220 Sum_probs=65.2
Q ss_pred cCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+++|||+|.+|...+..++. .+. .+|.+|+|++++ .+++.+.++... +..+....+.+
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~------~~v~v~~r~~~~--a~~~~~~~~~~~-----------~~~~~~~~~~~ 187 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDI------ERVRVYSRTFEK--AYAFAQEIQSKF-----------NTEIYVVNSAD 187 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCc------cEEEEECCCHHH--HHHHHHHHHHhc-----------CCcEEEeCCHH
Confidence 4689999999999988877754 342 689999999876 344444443211 01234567788
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++.++|+|+.|||+.. .++. ..+++|+.|+.+
T Consensus 188 ~~~~~aDiVi~aT~s~~--p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 188 EAIEEADIIVTVTNAKT--PVFS---EKLKKGVHINAV 220 (325)
T ss_pred HHHhcCCEEEEccCCCC--cchH---HhcCCCcEEEec
Confidence 88899999999999863 3332 456788887665
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.9e-05 Score=77.44 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=51.0
Q ss_pred cCeEEEECcchHHHHHHH--HHHHcCCCCCCCC-ceEEEEecCCCCCC-cchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGSGNWGSVASK--LIASNTLRLSSFH-DEVRMWVFEETLPS-GEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~--~La~~G~~~~~~~-~~V~l~~r~~~~~~-~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|+||+|||+|.||.+.+. .++... .+. .+|.++|+++++.+ .+.+++..... ...+.++..++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~----~l~~~evvLvDid~er~~~~~~l~~~~~~~---------~~~~~~i~~tt 67 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVP----ALRDAEIALMDIDPERLEESEIVARKLAES---------LGASAKITATT 67 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCc----cCCCCEEEEECCCHHHHHHHHHHHHHHHHh---------cCCCeEEEEEC
Confidence 579999999999977666 554211 011 58999999876511 11111111110 01123467788
Q ss_pred CHHHHhcCCCEEEEccCc
Q 014757 137 DLENAVKDANMLVFVTPH 154 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~ 154 (419)
|..+++.+||+||+++-.
T Consensus 68 D~~eal~dADfVv~ti~v 85 (431)
T PRK15076 68 DRREALQGADYVINAIQV 85 (431)
T ss_pred CHHHHhCCCCEEeEeeee
Confidence 977889999999999865
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00029 Score=69.02 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=65.7
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhc
Q 014757 64 VTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVK 143 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~ 143 (419)
|+|||+|.+|+.+|..|+..|.. +++.++|++++++ +..+..+...- .... ...+..+++.+ .+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~-----~el~l~D~~~~~~--~g~~~DL~~~~------~~~~-~~~i~~~~~~~-~l~ 65 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA-----SELVLVDVNEEKA--KGDALDLSHAS------AFLA-TGTIVRGGDYA-DAA 65 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC-----CEEEEEeCCccHH--HHHHHhHHHhc------cccC-CCeEEECCCHH-HhC
Confidence 68999999999999999988731 5799999987761 11111222110 0000 11344455554 589
Q ss_pred CCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 144 DANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 144 ~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+||+||++.... -++++.+.+.++. ++.+++..+|..+
T Consensus 66 ~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d 119 (300)
T cd00300 66 DADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVD 119 (300)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHH
Confidence 999999998742 1444555566654 6778888887443
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00014 Score=73.05 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=61.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcC-cCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTN-ENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g-~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||||.|||+|.+|++.|..|+++|. .+|++-+|+.++ ++++.... ...+. ..+ .+.-...+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d------~~V~iAdRs~~~------~~~i~~~~~~~v~~---~~v--D~~d~~al~ 63 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD------GEVTIADRSKEK------CARIAELIGGKVEA---LQV--DAADVDALV 63 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC------ceEEEEeCCHHH------HHHHHhhcccccee---EEe--cccChHHHH
Confidence 6899999999999999999999983 799999999876 55664432 11110 000 011112344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHH
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRL 164 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l 164 (419)
+++++.|+||-|.|.+....+++..
T Consensus 64 ~li~~~d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 64 ALIKDFDLVINAAPPFVDLTILKAC 88 (389)
T ss_pred HHHhcCCEEEEeCCchhhHHHHHHH
Confidence 6788999999999998777776543
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=71.14 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=69.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.+|..+|+.+..-| .+|..|+|.... .... ...+++
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg-------~~V~~~~~~~~~--------~~~~------------------~~~~l~ 192 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALG-------MKVLYAEHKGAS--------VCRE------------------GYTPFE 192 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCC-------CEEEEECCCccc--------cccc------------------ccCCHH
Confidence 3469999999999999999998777 788888764321 1100 124678
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++..||+|++++|- ...+.++ ++....++++.++|.+.-|-...
T Consensus 193 ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vd 239 (314)
T PRK06932 193 EVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVD 239 (314)
T ss_pred HHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccC
Confidence 889999999999995 5666666 34556678999999998876654
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00058 Score=68.21 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=66.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+||+|||+|.+|+.+|..|+..+.. .++.++|++++++.++ +..+... .. .++ ...+....+.++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~-----~el~LiDi~~~~~~g~--a~DL~~~--~~-~~~----~~~i~~~~dy~~- 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA-----DELALVDVNPDKLRGE--MLDLQHA--AA-FLP----RTKILASTDYAV- 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC-----CEEEEEeCCCchhhHH--HHHHHhh--hh-cCC----CCEEEeCCCHHH-
Confidence 6999999999999999999988731 5799999987652111 1122210 00 000 013444456765
Q ss_pred hcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 142 VKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++||+||++.-.. -++++.+.+..+ .++.+++..+|..+
T Consensus 103 ~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPvd 158 (350)
T PLN02602 103 TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPVD 158 (350)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCchH
Confidence 79999999985321 133444555554 46788888888553
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00032 Score=67.16 Aligned_cols=94 Identities=17% Similarity=0.065 Sum_probs=62.7
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
||||+|+|+ |.||..++..+.+... .++ .+++++++. .+.... .++..++++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~------~elvav~d~~~~~------~~~~~~--------------~~i~~~~dl 54 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED------LELVAAVDRPGSP------LVGQGA--------------LGVAITDDL 54 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecCCcc------ccccCC--------------CCccccCCH
Confidence 589999998 9999999988876531 554 457777654 111110 123456788
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++.++|+||.++++....+.+..... .+.-+|.-+.|+..
T Consensus 55 ~~ll~~~DvVid~t~p~~~~~~~~~al~---~G~~vvigttG~s~ 96 (257)
T PRK00048 55 EAVLADADVLIDFTTPEATLENLEFALE---HGKPLVIGTTGFTE 96 (257)
T ss_pred HHhccCCCEEEECCCHHHHHHHHHHHHH---cCCCEEEECCCCCH
Confidence 8777789999988888777776655543 35555555667653
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00034 Score=69.13 Aligned_cols=113 Identities=21% Similarity=0.175 Sum_probs=68.5
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC--CCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE--TLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~--~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+..||+|||+ |.+|+.+|..|...+....+...++.++|+.+ +++.++ +..+.. ...... .+.+++.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~--a~Dl~~--~~~~~~------~~~~i~~ 71 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGV--AMELED--CAFPLL------AGVVATT 71 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchH--HHHHhh--cccccc------CCcEEec
Confidence 3579999998 99999999999988843222223799999865 221111 112221 110000 1223333
Q ss_pred CHHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+..+.+++||+||++--.. .++++.+++.++-+++.+++..+|.++
T Consensus 72 ~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 133 (323)
T TIGR01759 72 DPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN 133 (323)
T ss_pred ChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 4334589999999986431 145555666666544888888888654
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00034 Score=70.77 Aligned_cols=112 Identities=11% Similarity=0.173 Sum_probs=71.9
Q ss_pred CcCeEEEECcchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-++|+|||.|.+|..+|+.|. .-| .+|..|++.... +........+......... +..++...++
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fG-------m~V~~~d~~~~~----~~~~~~~~~~~~l~~~~~~--~~~~~~~~~L 230 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQST----RLEKFVTAYGQFLKANGEQ--PVTWKRASSM 230 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-------CEEEEECCCCch----hhhhhhhhhcccccccccc--cccccccCCH
Confidence 3478999999999999999986 446 789999986532 0000011111000000000 0012223578
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++.||+|++++|- ...+.++ ++....++++.++|.+.-|-...
T Consensus 231 ~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVD 278 (386)
T PLN02306 231 EEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVID 278 (386)
T ss_pred HHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 8999999999999995 5666666 34556688999999998775543
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00057 Score=65.74 Aligned_cols=93 Identities=17% Similarity=0.273 Sum_probs=58.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEE-EecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRM-WVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l-~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||||+|||+|.||..++..+.+... .++.. ++++... +...+.- ...+..+++.+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~------~~l~~v~~~~~~~-------~~~~~~~-----------~~~~~~~~d~~ 56 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPD------LRVDWVIVPEHSI-------DAVRRAL-----------GEAVRVVSSVD 56 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCC------ceEEEEEEcCCCH-------HHHhhhh-----------ccCCeeeCCHH
Confidence 5899999999999999999987631 45543 3343221 2211100 00234667777
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+...+.|+|+.|+++....+....... .+.-++..+.|
T Consensus 57 ~l~~~~DvVve~t~~~~~~e~~~~aL~---aGk~Vvi~s~~ 94 (265)
T PRK13303 57 ALPQRPDLVVECAGHAALKEHVVPILK---AGIDCAVISVG 94 (265)
T ss_pred HhccCCCEEEECCCHHHHHHHHHHHHH---cCCCEEEeChH
Confidence 653468999999999877666655543 45555555544
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00061 Score=66.95 Aligned_cols=97 Identities=12% Similarity=0.174 Sum_probs=71.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|+|+|.+|..+|++|..-| ..+....|++.. .+...+.+ .+ ..|.+
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg-------~~i~y~~r~~~~------~~~~~~~~--------------~~-~~d~~ 212 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFG-------CVILYHSRTQLP------PEEAYEYY--------------AE-FVDIE 212 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhcc-------ceeeeecccCCc------hhhHHHhc--------------cc-ccCHH
Confidence 3468999999999999999998876 566667776654 22222211 01 23566
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+.+..+|+|++|.|- .+++.++ +++..+++++.++|...-|-...
T Consensus 213 ~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iid 259 (336)
T KOG0069|consen 213 ELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIID 259 (336)
T ss_pred HHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccccccc
Confidence 778899999999996 7788888 45677889999999998776554
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00018 Score=60.67 Aligned_cols=107 Identities=15% Similarity=0.079 Sum_probs=69.4
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccC-cccH-HHHH-HhhhccCCCCHHHHHHHHh
Q 014757 277 LEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLG-GRNR-KVAE-AFAKNEGKRSFDDLEAEML 353 (419)
Q Consensus 277 ~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~-~rn~-~~g~-~l~~~g~~~~~~~~~~~~~ 353 (419)
+|+.+|........++.|+..++++. |++++++++.. ..... +... .... .+.+ +. +.+.+
T Consensus 6 ~Kl~~N~l~~~~~~~~aEa~~la~~~--Gld~~~~~~vl------~~~~~~s~~~~~~~~~~~~~-~~-~~~~f------ 69 (122)
T PF14833_consen 6 MKLANNLLIAANMAALAEALALAEKA--GLDPEQLLDVL------SAGSGGSWMLKNRAPRMILN-GD-FDPGF------ 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--TS-HHHHHHHH------HTSTTHBHHHHHHHHHHHHT-TT-TCSSS------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHH------ccCCcCchHHHhhhhhhhhc-cc-CCccc------
Confidence 34456677778899999999999999 58999988742 11111 1111 1232 2333 21 22211
Q ss_pred cCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHH
Q 014757 354 QGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYS 403 (419)
Q Consensus 354 ~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~ 403 (419)
......||++.+.++|++.|+ ++|+.+.+.+.+ .++.|...+++++
T Consensus 70 --~l~~~~KDl~l~~~~a~~~g~--~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 70 --SLDLARKDLRLALDLAKEAGV--PLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp --BHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred --hhHhhccHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 233458899999999999999 999999999988 4677888887764
|
... |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00025 Score=70.59 Aligned_cols=97 Identities=15% Similarity=0.248 Sum_probs=65.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+++|||+|..+..-...+..-- .. .+|++|+|++++ .+.+++.+++.+ .++...++++
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr-~i----~~V~v~~r~~~~--a~~~~~~~~~~~------------~~v~~~~~~~ 188 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL-GI----EEIRLYDIDPAA--TAKLARNLAGPG------------LRIVACRSVA 188 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC-Cc----eEEEEEeCCHHH--HHHHHHHHHhcC------------CcEEEeCCHH
Confidence 3467999999999988877665532 01 689999999876 334444444321 1355678899
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++.+||+|+.||++..-..+++. .++++|+.|..+
T Consensus 189 ~av~~ADIIvtaT~S~~~~Pvl~~--~~lkpG~hV~aI 224 (346)
T PRK07589 189 EAVEGADIITTVTADKTNATILTD--DMVEPGMHINAV 224 (346)
T ss_pred HHHhcCCEEEEecCCCCCCceecH--HHcCCCcEEEec
Confidence 999999999999987543333321 356778866544
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00036 Score=73.12 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=66.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
....+|+|||+|.||..++..|...|. .+|++++|+.++ ++.+.+.. ++..+ .+....+.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~------~~V~V~nRs~er------a~~La~~~------~g~~i--~~~~~~dl 323 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC------TKMVVVNRSEER------VAALREEF------PDVEI--IYKPLDEM 323 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC------CeEEEEeCCHHH------HHHHHHHh------CCCce--EeecHhhH
Confidence 345789999999999999999999983 479999999766 45554421 00000 01123455
Q ss_pred HHHhcCCCEEEEccCcc---hHHHHHHHHhccC---CCCcEEEEeec
Q 014757 139 ENAVKDANMLVFVTPHQ---FMEGICKRLVGKV---NGDVEAISLIK 179 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~---~~~~vl~~l~~~l---~~~tiivs~~n 179 (419)
.+++.++|+||.||++. ...+.++.+.+.- ....++|++.-
T Consensus 324 ~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 324 LACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred HHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 66788999999999762 3455555553211 11247788763
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00024 Score=72.98 Aligned_cols=97 Identities=16% Similarity=0.277 Sum_probs=62.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~ 137 (419)
...++|+|||+|.||..++..|...|. .+|++++|++++ .+.+.+. |. .+....+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~------~~V~v~~r~~~r------a~~la~~~g~------------~~~~~~~ 235 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV------RKITVANRTLER------AEELAEEFGG------------EAIPLDE 235 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC------CeEEEEeCCHHH------HHHHHHHcCC------------cEeeHHH
Confidence 344789999999999999999998882 389999998765 3434332 11 1112234
Q ss_pred HHHHhcCCCEEEEccCcch---HHHHHHHHh-ccCCCCcEEEEeec
Q 014757 138 LENAVKDANMLVFVTPHQF---MEGICKRLV-GKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~---~~~vl~~l~-~~l~~~tiivs~~n 179 (419)
..+++.++|+||.||++.. ..+.++... ..-..+.+++++..
T Consensus 236 ~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 236 LPEALAEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred HHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 5566789999999998632 223333321 11123567888864
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0018 Score=64.58 Aligned_cols=101 Identities=20% Similarity=0.338 Sum_probs=62.0
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|+||+|||+ |.+|..++..|.+... +++..+.++.+. . +.+.+...+ +.+. ..... .+.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~------~elv~v~~~~~~--g----~~l~~~~~~---~~~~---~~~~~-~~~~ 62 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE------VEIVAVTSRSSA--G----KPLSDVHPH---LRGL---VDLVL-EPLD 62 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC------ceEEEEECcccc--C----cchHHhCcc---cccc---cCcee-ecCC
Confidence 579999997 9999999999987631 676555443322 1 222211100 0000 00111 1111
Q ss_pred -HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 140 -NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 -ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
....++|+||+|+|.....++...+.. .|..||++++..-.
T Consensus 63 ~~~~~~vD~Vf~alP~~~~~~~v~~a~~---aG~~VID~S~~fR~ 104 (343)
T PRK00436 63 PEILAGADVVFLALPHGVSMDLAPQLLE---AGVKVIDLSADFRL 104 (343)
T ss_pred HHHhcCCCEEEECCCcHHHHHHHHHHHh---CCCEEEECCcccCC
Confidence 134679999999999888777766644 58899999876644
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00081 Score=65.65 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=64.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC--CHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP--DLE 139 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~--~~~ 139 (419)
|||+|||+|.+|+++|..|...+. ..++.++|+.++.+.++ +..+.... .......+... +.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~-----~~el~LiDi~~~~~~G~--a~DL~~~~--------~~~~~~~~i~~~~~y~ 65 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL-----GSELVLIDINEEKAEGV--ALDLSHAA--------APLGSDVKITGDGDYE 65 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc-----cceEEEEEcccccccch--hcchhhcc--------hhccCceEEecCCChh
Confidence 699999999999999999977763 14899999986552111 11121100 00111223333 344
Q ss_pred HHhcCCCEEEEcc--Cc---c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVT--PH---Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilav--p~---~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+.++|+|+++. |- . -++++.+++... .++.+++..+|.++
T Consensus 66 -~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvtNPvD 122 (313)
T COG0039 66 -DLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVTNPVD 122 (313)
T ss_pred -hhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEecCcHH
Confidence 488999999988 22 1 133444455554 35788888888665
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00088 Score=65.80 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=65.7
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec---CC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD---PD 137 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~---~~ 137 (419)
|||+|||+ |.+|+.+|..|+..+. ..++.++|++ ++.++. -.++..- .+..++.. ++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~-----~~elvLiDi~--~a~g~a--lDL~~~~----------~~~~i~~~~~~~~ 61 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL-----VSELALYDIV--NTPGVA--ADLSHIN----------TPAKVTGYLGPEE 61 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----CcEEEEEecC--ccceee--hHhHhCC----------CcceEEEecCCCc
Confidence 69999999 9999999999998873 1579999987 322221 1222210 01134432 23
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+.++++|+||++.-.. -+.++.+.+.++ .++.+++..+|.++
T Consensus 62 ~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvD 121 (310)
T cd01337 62 LKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVN 121 (310)
T ss_pred hHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchh
Confidence 335589999999987541 234444555555 57889999999654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00038 Score=68.58 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=66.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+++|||+|..+..-+..+..-- . . .+|++|+|++++ .+.+++.+++.+ ..+...++.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~-~---i-~~v~v~~r~~~~--a~~~~~~~~~~~------------~~v~~~~~~~ 187 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVT-D---C-RQLWVWGRSETA--LEEYRQYAQALG------------FAVNTTLDAA 187 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC-C---C-CEEEEECCCHHH--HHHHHHHHHhcC------------CcEEEECCHH
Confidence 3468999999999999988887642 1 1 689999999876 333334343322 1355678888
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++.+||+|+.||++.. .+++ ..++++|+.|..+.
T Consensus 188 ~av~~ADIV~taT~s~~--P~~~--~~~l~~G~hi~~iG 222 (315)
T PRK06823 188 EVAHAANLIVTTTPSRE--PLLQ--AEDIQPGTHITAVG 222 (315)
T ss_pred HHhcCCCEEEEecCCCC--ceeC--HHHcCCCcEEEecC
Confidence 99999999999999753 3331 13567788876653
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00063 Score=67.31 Aligned_cols=109 Identities=23% Similarity=0.193 Sum_probs=67.0
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC--CCCCc--chHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE--TLPSG--EKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~--~~~~~--~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
.||+|+|+ |.+|+.++..|+..+....+...++.++|+++ +.+.+ .++.+... + +......+.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~---------~---~~~~~~i~~ 68 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF---------P---LLKGVVITT 68 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc---------c---ccCCcEEec
Confidence 38999999 99999999999987753222224699999986 44111 11111100 0 001123334
Q ss_pred CHHHHhcCCCEEEEccCc-----ch-----------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPH-----QF-----------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~-----~~-----------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+..+++++||+||++--. .. ++++.+.+.++.+++.+++..+|.++
T Consensus 69 ~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 130 (323)
T cd00704 69 DPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN 130 (323)
T ss_pred ChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence 445668999999987643 11 44555666666456778887888654
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0008 Score=66.39 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
...|.||+|||+ |.+|+.+|..|+..+. ..++.++|++... ++ +..+..... ...+...+
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~-----~~elvL~Di~~~~--g~--a~Dl~~~~~----------~~~v~~~t 65 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPH-----VSELSLYDIVGAP--GV--AADLSHIDT----------PAKVTGYA 65 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCC-----CCEEEEEecCCCc--cc--ccchhhcCc----------CceEEEec
Confidence 456779999998 9999999999986652 1689999994322 11 112221110 01233333
Q ss_pred CH---HHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 137 DL---ENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 137 ~~---~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++ .+++.++|+||++.-.. .++++++.+.++ .++.+++..+|+++.
T Consensus 66 d~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 66 DGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred CCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 32 45689999999887541 122333344443 567788888998764
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00034 Score=67.49 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=56.1
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+|||. |.||.+||.+|.++| +.|++|.. + +.+++
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~g-------atVtv~~s---~-------------------------------t~~l~ 196 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKN-------ATVTLTHS---R-------------------------------TRNLA 196 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCC-------CEEEEECC---C-------------------------------CCCHH
Confidence 368999998 999999999999999 89999921 1 12456
Q ss_pred HHhcCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.+++||+||.|++... ++.. ++++|+++|++.
T Consensus 197 ~~~~~ADIVI~avg~~~~v~~~------~ik~GavVIDvg 230 (284)
T PRK14179 197 EVARKADILVVAIGRGHFVTKE------FVKEGAVVIDVG 230 (284)
T ss_pred HHHhhCCEEEEecCccccCCHH------HccCCcEEEEec
Confidence 67789999999999743 3332 378899999874
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00057 Score=62.92 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=58.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-|+|+|+|.|.||..+|..|.+.| ++|.+++++++. .+.+.+. + ....+.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G-------~~Vvv~D~~~~~------~~~~~~~~g--------------~~~v~~ 78 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEG-------AKLIVADINEEA------VARAAELFG--------------ATVVAP 78 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEcCCHHH------HHHHHHHcC--------------CEEEcc
Confidence 44578999999999999999999999 899999988654 4444432 1 112222
Q ss_pred HHHHh-cCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecC
Q 014757 138 LENAV-KDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 138 ~~ea~-~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
++.. .++|+++-|.... -.++.+++ ++ ..+|+.-.|+
T Consensus 79 -~~l~~~~~Dv~vp~A~~~~I~~~~~~~----l~-~~~v~~~AN~ 117 (200)
T cd01075 79 -EEIYSVDADVFAPCALGGVINDDTIPQ----LK-AKAIAGAANN 117 (200)
T ss_pred -hhhccccCCEEEecccccccCHHHHHH----cC-CCEEEECCcC
Confidence 2333 3799999776543 22333333 33 4577777775
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00066 Score=62.46 Aligned_cols=92 Identities=15% Similarity=0.268 Sum_probs=63.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|+|++||.|++|..+...+.+.-... .-|.++||+.++ +..+.+.- ..+..++++|.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~----e~v~v~D~~~ek------~~~~~~~~-------------~~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDF----ELVAVYDRDEEK------AKELEASV-------------GRRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcce----eEEEEecCCHHH------HHHHHhhc-------------CCCccccHHHH
Confidence 68999999999999988876542100 347889998776 44444321 01233778887
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+.+.|+++-|-..+++++...++... +-+.+|+|.
T Consensus 58 ~~~~DlvVEaAS~~Av~e~~~~~L~~-g~d~iV~SV 92 (255)
T COG1712 58 IAEVDLVVEAASPEAVREYVPKILKA-GIDVIVMSV 92 (255)
T ss_pred hhccceeeeeCCHHHHHHHhHHHHhc-CCCEEEEec
Confidence 89999999999999999988776542 224444444
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00087 Score=65.81 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=63.3
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCHHHH
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDLENA 141 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~~ea 141 (419)
||+|||+|.+|+.+|..|+..+.. .++.++|.+++++.++ +..+.... .+.....++. ..+.+ .
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~-----~elvL~Di~~~~a~g~--a~DL~~~~-------~~~~~~~~~i~~~~y~-~ 65 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF-----SEIVLIDVNEGVAEGE--ALDFHHAT-------ALTYSTNTKIRAGDYD-D 65 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEeCCcchhhHH--HHHHHhhh-------ccCCCCCEEEEECCHH-H
Confidence 799999999999999999988731 4799999987652111 11222100 0000011222 34555 5
Q ss_pred hcCCCEEEEccCc-----ch-------------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 142 VKDANMLVFVTPH-----QF-------------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~-----~~-------------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++||+||++.-. .. ++++.+.+..+ .++.+++..+|.++
T Consensus 66 ~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvD 123 (307)
T cd05290 66 CADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLD 123 (307)
T ss_pred hCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCcHH
Confidence 8999999998753 11 12222334443 36788888888654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0021 Score=61.87 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=63.0
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
||||+|+| +|.||..++..+.+... .++ .+++|.......+++ ..+. +.. +.++..++++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~------~elvav~d~~~~~~~~~~~-~~~~--~~~---------~~gv~~~~d~ 62 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEG------LQLVAAFERHGSSLQGTDA-GELA--GIG---------KVGVPVTDDL 62 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecCCccccCCCH-HHhc--CcC---------cCCceeeCCH
Confidence 47999999 69999999999987531 554 456644221001111 1111 100 1124567788
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++....+|+||.++++....+.+..... .+.-+|..+.|...
T Consensus 63 ~~l~~~~DvVIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~ 104 (266)
T TIGR00036 63 EAVETDPDVLIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSE 104 (266)
T ss_pred HHhcCCCCEEEECCChHHHHHHHHHHHH---CCCCEEEECCCCCH
Confidence 7754568999999999887777655543 45666666667653
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00041 Score=68.89 Aligned_cols=76 Identities=24% Similarity=0.423 Sum_probs=54.8
Q ss_pred cCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.++|+|||+|.+|.+.+..|.. .+. .+|++|+|++++ .+.+++.+++.. + ..+...++++
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~------~~V~v~~R~~~~--a~~l~~~~~~~~-------g----~~v~~~~d~~ 192 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPI------REVRVWARDAAK--AEAYAADLRAEL-------G----IPVTVARDVH 192 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC------CEEEEEcCCHHH--HHHHHHHHhhcc-------C----ceEEEeCCHH
Confidence 4689999999999998888875 332 689999999876 333333333210 0 1244567888
Q ss_pred HHhcCCCEEEEccCcc
Q 014757 140 NAVKDANMLVFVTPHQ 155 (419)
Q Consensus 140 ea~~~aDlVilavp~~ 155 (419)
+++.++|+|+.|+|+.
T Consensus 193 ~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 193 EAVAGADIIVTTTPSE 208 (330)
T ss_pred HHHccCCEEEEeeCCC
Confidence 8889999999999984
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=65.28 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=67.1
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC--CCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL--PSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~--~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..||+|+|+ |.+|+.++..|...+...++...+|.++|+++.. +.++. -.+.. .. .....++....+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~--~Dl~d-------~~-~~~~~~~~~~~~ 71 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVV--MELQD-------CA-FPLLKSVVATTD 71 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccccee--eehhh-------cc-ccccCCceecCC
Confidence 468999998 9999999999998663211112489999996532 11100 00000 00 000113344566
Q ss_pred HHHHhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+++++||+||++.-. . .++++.+.+.++..++.+++..+|.++
T Consensus 72 ~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (325)
T cd01336 72 PEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN 132 (325)
T ss_pred HHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH
Confidence 55668999999987643 1 124445566666556788888888554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00078 Score=69.05 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=62.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~ 137 (419)
....+|+|||+|.||..++..|...|. .+|++++|+.++ .+.+.+. +. ......+
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~------~~V~v~~rs~~r------a~~la~~~g~------------~~i~~~~ 233 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGV------GKILIANRTYER------AEDLAKELGG------------EAVKFED 233 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCC------CEEEEEeCCHHH------HHHHHHHcCC------------eEeeHHH
Confidence 344789999999999999999999884 689999998765 3334331 10 0111234
Q ss_pred HHHHhcCCCEEEEccCcch---HHHHHHHHhccCCCCcEEEEeec
Q 014757 138 LENAVKDANMLVFVTPHQF---MEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~---~~~vl~~l~~~l~~~tiivs~~n 179 (419)
..+++.++|+||.|+++.. ..+.++...+.-+...+++++..
T Consensus 234 l~~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 234 LEEYLAEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred HHHHHhhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 5566789999999998632 22233332211012347778764
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00049 Score=67.90 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=68.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
..++|||+|..+..-...+..--- -.+|.+|+|+++. .++++..+.+.+ +..+...++.+++
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~-----~~~I~i~~r~~~~--~e~~a~~l~~~~-----------~~~v~a~~s~~~a 192 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRD-----IREIRVYSRDPEA--AEAFAARLRKRG-----------GEAVGAADSAEEA 192 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCC-----ccEEEEEcCCHHH--HHHHHHHHHhhc-----------CccceeccCHHHH
Confidence 579999999999999888876420 0689999999876 444444444432 1135677888999
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++||+|+.|||+.. .++ ...++++++.|..+.
T Consensus 193 v~~aDiIvt~T~s~~--Pil--~~~~l~~G~hI~aiG 225 (330)
T COG2423 193 VEGADIVVTATPSTE--PVL--KAEWLKPGTHINAIG 225 (330)
T ss_pred hhcCCEEEEecCCCC--Cee--cHhhcCCCcEEEecC
Confidence 999999999999976 333 235667887776654
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00059 Score=67.67 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=63.5
Q ss_pred cCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+++|||+|.+|...+..|.. .+. .+|++|+|++++ .+.+++.+.+.. ...+...++++
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i------~~v~V~~R~~~~--a~~~a~~~~~~~-----------g~~v~~~~~~~ 189 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDI------RSARIWARDSAK--AEALALQLSSLL-----------GIDVTAATDPR 189 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCc------cEEEEECCCHHH--HHHHHHHHHhhc-----------CceEEEeCCHH
Confidence 4689999999999999999974 442 579999999876 334444443210 01234567888
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++.++|+|+.|||+.. .++. ...+++++.+..+
T Consensus 190 ~av~~aDiVvtaT~s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 190 AAMSGADIIVTTTPSET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred HHhccCCEEEEecCCCC--cEec--HHHcCCCcEEEee
Confidence 88899999999999843 2221 1235667766543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00088 Score=57.31 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=71.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||.+||+| -|..+|..|++.| ++|+.+|.+++. ++..++.+.+... ..+ +..++ +
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G-------~~ViaIDi~~~a------V~~a~~~~~~~v~-------dDl-f~p~~-~ 73 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESG-------FDVIVIDINEKA------VEKAKKLGLNAFV-------DDL-FNPNL-E 73 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHHhCCeEEE-------CcC-CCCCH-H
Confidence 3689999999 9988999999999 999999999875 6666665432110 011 22333 3
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
..+++|+|.-.=|+..+..-+-+++..++.+-+|..+++
T Consensus 74 ~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 74 IYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred HHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 567999999999998888878888888877777777764
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00063 Score=67.46 Aligned_cols=95 Identities=21% Similarity=0.328 Sum_probs=63.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+|+|||+|.+|...+..|..... . ..|.+|+|+++. .+++.+.+++. .+..+...++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~-i----~~v~v~~r~~~~--~~~~~~~~~~~-----------~~~~v~~~~~~~ 189 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFD-L----EEVRVYDRTKSS--AEKFVERMSSV-----------VGCDVTVAEDIE 189 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC-c----eEEEEECCCHHH--HHHHHHHHHhh-----------cCceEEEeCCHH
Confidence 45689999999999999999875421 1 679999999865 23333333321 011244567888
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++. +|+|++|||+.. .+++ ..++++++.|.++
T Consensus 190 ~~l~-aDiVv~aTps~~--P~~~--~~~l~~g~hV~~i 222 (326)
T PRK06046 190 EACD-CDILVTTTPSRK--PVVK--AEWIKEGTHINAI 222 (326)
T ss_pred HHhh-CCEEEEecCCCC--cEec--HHHcCCCCEEEec
Confidence 8776 999999999853 2221 1345678776655
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0015 Score=66.88 Aligned_cols=112 Identities=14% Similarity=0.045 Sum_probs=68.3
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCC--CCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSS--FHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~--~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.-||+|||+ |.+|+.+|..|+..++..++ +..++.++|++++++.++ +-.++..- ..+..++.++.+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~--amDL~daa--------~~~~~~v~i~~~ 169 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGV--AMELEDSL--------YPLLREVSIGID 169 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHH--HHHHHHhh--------hhhcCceEEecC
Confidence 458999999 99999999999988211100 113788999988762221 11222210 001113443334
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+.+++||+||++--.. .++++.+.|.++.+++.++|..+|.++
T Consensus 170 ~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD 230 (444)
T PLN00112 170 PYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN 230 (444)
T ss_pred CHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH
Confidence 445589999999987541 144445556564467888888888654
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0009 Score=61.60 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=31.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
...||+|+|+|.||+.+|..|+++|. .+++++|++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv------g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI------GKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC------CEEEEECCC
Confidence 34689999999999999999999993 479999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.001 Score=65.37 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=65.2
Q ss_pred eEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-c-C-CH
Q 014757 63 KVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-D-P-DL 138 (419)
Q Consensus 63 kI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~-~-~~ 138 (419)
||+|||+ |.+|+.+|..|+..+.. .++.++|+++.. ++. -.+.. . ..+..++. + . ++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~-----~elvL~Di~~a~--g~a--~DL~~-~---------~~~~~i~~~~~~~~~ 61 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV-----SELSLYDIAGAA--GVA--ADLSH-I---------PTAASVKGFSGEEGL 61 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC-----cEEEEecCCCCc--EEE--chhhc-C---------CcCceEEEecCCCch
Confidence 7999999 99999999999988731 479999987622 211 11221 1 01123444 2 2 23
Q ss_pred HHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++++++|+||++.-.. .++++.+.+.++ .++.+++..+|.++
T Consensus 62 ~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvD 120 (312)
T TIGR01772 62 ENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVN 120 (312)
T ss_pred HHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchh
Confidence 45689999999887541 244444555555 57889999999664
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00053 Score=70.82 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=60.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|+|.|+|+|.+|..++..|.+.| ++|++++++++. .+.+.+ .+.... .++ ..-....++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g-------~~v~vid~~~~~------~~~~~~~~~~~~~-~gd------~~~~~~l~~ 60 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN-------NDVTVIDTDEER------LRRLQDRLDVRTV-VGN------GSSPDVLRE 60 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-------CcEEEEECCHHH------HHHHHhhcCEEEE-EeC------CCCHHHHHH
Confidence 68999999999999999999999 899999998765 555544 221100 000 000112233
Q ss_pred H-hcCCCEEEEccCcchHHHHHHHHhccC-CCCcEEE
Q 014757 141 A-VKDANMLVFVTPHQFMEGICKRLVGKV-NGDVEAI 175 (419)
Q Consensus 141 a-~~~aDlVilavp~~~~~~vl~~l~~~l-~~~tiiv 175 (419)
+ +.++|.||++++.......+......+ +...+++
T Consensus 61 ~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 61 AGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred cCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 3 568999999999866655544444433 3333443
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00089 Score=68.89 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=64.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|+|.|.+|..+|..|...| .+|+++++++.+ .......| ++ ..+.+
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~G-------a~ViV~e~dp~~------a~~A~~~G--------------~~-~~~le 304 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFG-------ARVVVTEIDPIC------ALQAAMEG--------------YQ-VVTLE 304 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCchh------HHHHHhcC--------------ce-eccHH
Confidence 3468999999999999999999999 899999988754 21111112 12 23566
Q ss_pred HHhcCCCEEEEccCcchHHHHH-HHHhccCCCCcEEEEeecC
Q 014757 140 NAVKDANMLVFVTPHQFMEGIC-KRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl-~~l~~~l~~~tiivs~~nG 180 (419)
++++.+|+|++++.... ++ .+....++++.+++.+.-+
T Consensus 305 ell~~ADIVI~atGt~~---iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 305 DVVETADIFVTATGNKD---IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred HHHhcCCEEEECCCccc---ccCHHHHhccCCCcEEEEcCCC
Confidence 77889999999976433 33 2444567889999987654
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00065 Score=66.02 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=61.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.++|.|||+|.+|.+++..|++.|. .+|++++|+.++ .+.+++.+.... +.. .+....+..+
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~------~~I~I~nR~~~k--a~~la~~l~~~~------~~~----~~~~~~~~~~ 188 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGV------ERLTIFDVDPAR--AAALADELNARF------PAA----RATAGSDLAA 188 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC------CEEEEECCCHHH--HHHHHHHHHhhC------CCe----EEEeccchHh
Confidence 4689999999999999999999993 489999999876 333334333211 000 1222234444
Q ss_pred HhcCCCEEEEccCcchHHHHHHHH-hccCCCCcEEEEee
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRL-VGKVNGDVEAISLI 178 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l-~~~l~~~tiivs~~ 178 (419)
.+.++|+||-|||.-.....-..+ ...++++.+++++.
T Consensus 189 ~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~Div 227 (284)
T PRK12549 189 ALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIV 227 (284)
T ss_pred hhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEee
Confidence 567899999999863110000001 12355667777765
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00067 Score=65.39 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=60.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+++.|+|+|.+|.+++..|++.| ++|++++|++++ .+++.+.+...+ .+...+..+.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g-------~~v~v~~R~~~~--~~~la~~~~~~~-------------~~~~~~~~~~ 174 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKAD-------CNVIIANRTVSK--AEELAERFQRYG-------------EIQAFSMDEL 174 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC-------CEEEEEeCCHHH--HHHHHHHHhhcC-------------ceEEechhhh
Confidence 468999999999999999999999 899999998765 233333332211 0111111112
Q ss_pred HhcCCCEEEEccCcch---HHHHHHHHhccCCCCcEEEEeec
Q 014757 141 AVKDANMLVFVTPHQF---MEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~---~~~vl~~l~~~l~~~tiivs~~n 179 (419)
...++|+||.|+|... .++..- ....++++.+++++.-
T Consensus 175 ~~~~~DivInatp~gm~~~~~~~~~-~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 175 PLHRVDLIINATSAGMSGNIDEPPV-PAEKLKEGMVVYDMVY 215 (270)
T ss_pred cccCccEEEECCCCCCCCCCCCCCC-CHHHcCCCCEEEEecc
Confidence 2357999999999732 211100 0123567888888853
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.002 Score=65.35 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=63.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-.+|+|+|.|.+|..+|..+...| .+|+++++++.+ .......| ... .+.++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~G-------a~ViV~d~dp~r------~~~A~~~G--------------~~v-~~lee 246 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMG-------ARVIVTEVDPIR------ALEAAMDG--------------FRV-MTMEE 246 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCc-------CEEEEEeCChhh------HHHHHhcC--------------CEe-CCHHH
Confidence 458999999999999999999999 899999998754 22222222 112 23456
Q ss_pred HhcCCCEEEEccCcchHHHHHH-HHhccCCCCcEEEEeec
Q 014757 141 AVKDANMLVFVTPHQFMEGICK-RLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~-~l~~~l~~~tiivs~~n 179 (419)
++..+|+||.++.... ++. .....++++.+++...-
T Consensus 247 al~~aDVVItaTG~~~---vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 247 AAKIGDIFITATGNKD---VIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred HHhcCCEEEECCCCHH---HHHHHHHhcCCCCcEEEEECC
Confidence 7889999999987543 232 34566788888887754
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00048 Score=69.61 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=55.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~ 137 (419)
-...|+.|||+|-||...|..|+++|. .+|++.+|+.++ ++.+.+. +. .+...++
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~------~~i~IaNRT~er------A~~La~~~~~------------~~~~l~e 231 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGV------KKITIANRTLER------AEELAKKLGA------------EAVALEE 231 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCC------CEEEEEcCCHHH------HHHHHHHhCC------------eeecHHH
Confidence 355789999999999999999999995 789999999887 4444432 11 1223456
Q ss_pred HHHHhcCCCEEEEccCc
Q 014757 138 LENAVKDANMLVFVTPH 154 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~ 154 (419)
..+.+.++|+||.+|.+
T Consensus 232 l~~~l~~~DvVissTsa 248 (414)
T COG0373 232 LLEALAEADVVISSTSA 248 (414)
T ss_pred HHHhhhhCCEEEEecCC
Confidence 66678899999999876
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0017 Score=66.35 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=63.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|+|+|.+|..+|..|...| .+|+++++++.+ .......| ... .+.+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G-------a~ViV~d~dp~r------a~~A~~~G--------------~~v-~~l~ 262 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG-------ARVIVTEVDPIC------ALQAAMDG--------------FRV-MTME 262 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEcCCchh------hHHHHhcC--------------CEe-cCHH
Confidence 3468999999999999999999999 899999998765 22222222 122 2456
Q ss_pred HHhcCCCEEEEccCcchHHHHHH-HHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICK-RLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~-~l~~~l~~~tiivs~~ 178 (419)
+++..+|+||.++.... ++. .....++++.+++...
T Consensus 263 eal~~aDVVI~aTG~~~---vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 263 EAAELGDIFVTATGNKD---VITAEHMEAMKDGAILANIG 299 (425)
T ss_pred HHHhCCCEEEECCCCHH---HHHHHHHhcCCCCCEEEEcC
Confidence 77889999999986543 332 3456678888888764
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00069 Score=66.79 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=59.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcC-CCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNT-LRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G-~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...+++|||+|..|..-+..+..-- . .+|.+|+|+++. .+++++.+++.+ ..+...+++
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i------~~v~v~~r~~~~--~~~~~~~~~~~~------------~~v~~~~~~ 186 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPI------KEVRVYSRSPER--AEAFAARLRDLG------------VPVVAVDSA 186 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--------SEEEEE-SSHHH--HHHHHHHHHCCC------------TCEEEESSH
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCc------eEEEEEccChhH--HHHHHHhhcccc------------ccceeccch
Confidence 3458999999999999888887642 2 689999999865 445555555411 135677899
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++++++||+|+.||++.....+++ ..++++++.|..+.
T Consensus 187 ~~av~~aDii~taT~s~~~~P~~~--~~~l~~g~hi~~iG 224 (313)
T PF02423_consen 187 EEAVRGADIIVTATPSTTPAPVFD--AEWLKPGTHINAIG 224 (313)
T ss_dssp HHHHTTSSEEEE----SSEEESB---GGGS-TT-EEEE-S
T ss_pred hhhcccCCEEEEccCCCCCCcccc--HHHcCCCcEEEEec
Confidence 999999999999999865212221 24677888877664
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0029 Score=62.32 Aligned_cols=102 Identities=12% Similarity=0.206 Sum_probs=63.5
Q ss_pred CeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe--cCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA--DPD 137 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~--~~~ 137 (419)
|||+|||+ |.+|.+++..|... +. .+++.++++++.. .++ +-.+.... ....++. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~-----~~el~L~d~~~~~-~g~--alDl~~~~----------~~~~i~~~~~~d 62 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA-----GSELSLYDIAPVT-PGV--AVDLSHIP----------TAVKIKGFSGED 62 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC-----ccEEEEEecCCCC-cce--ehhhhcCC----------CCceEEEeCCCC
Confidence 79999999 99999999988653 21 1689999987532 111 01121100 0011232 346
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+++.++|+||+|.-.. .+.++++.+.++ .++.+++..+|..+
T Consensus 63 ~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D 122 (312)
T PRK05086 63 PTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN 122 (312)
T ss_pred HHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence 555688999999998641 233444555554 56788888888654
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00064 Score=69.45 Aligned_cols=75 Identities=11% Similarity=0.153 Sum_probs=54.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...+||.|||+|.||..++..|+..|. .++++++|+.++ ++.+.+.- ++ ..+...++.
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~------~~I~V~nRt~~r------a~~La~~~------~~----~~~~~~~~l 236 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAP------KQIMLANRTIEK------AQKITSAF------RN----ASAHYLSEL 236 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCC------CEEEEECCCHHH------HHHHHHHh------cC----CeEecHHHH
Confidence 344689999999999999999999983 589999999766 45554421 00 011223455
Q ss_pred HHHhcCCCEEEEccCcc
Q 014757 139 ENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~ 155 (419)
.+.+.++|+||.||++.
T Consensus 237 ~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 237 PQLIKKADIIIAAVNVL 253 (414)
T ss_pred HHHhccCCEEEECcCCC
Confidence 56688999999999973
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00091 Score=65.53 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=66.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+++|||+|..|..-+..+..-- . + .+|.+|+|++++ .+++++.+.+.. ...+....+++
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~-~---i-~~v~v~~r~~~~--a~~f~~~~~~~~-----------~~~v~~~~~~~ 177 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVY-N---P-KRIRVYSRNFDH--ARAFAERFSKEF-----------GVDIRPVDNAE 177 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcC-C---C-CEEEEECCCHHH--HHHHHHHHHHhc-----------CCcEEEeCCHH
Confidence 3468999999999999988887642 1 1 689999999876 344444444321 11355678899
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++.+||+|+.||++.. .+++ ..++++++.|..+
T Consensus 178 eav~~aDIV~taT~s~~--P~~~--~~~l~pg~hV~ai 211 (301)
T PRK06407 178 AALRDADTITSITNSDT--PIFN--RKYLGDEYHVNLA 211 (301)
T ss_pred HHHhcCCEEEEecCCCC--cEec--HHHcCCCceEEec
Confidence 99999999999999853 2221 1345677665544
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0053 Score=61.39 Aligned_cols=100 Identities=22% Similarity=0.376 Sum_probs=62.0
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDL 138 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~ 138 (419)
|||+|+|+ |.+|.-+.+.|.+.-. .++. ++++++.. + +.+.....+ +.+. ...... .+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~------~el~~l~~s~~sa--g----k~~~~~~~~---l~~~---~~~~~~~~~~ 62 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE------VEITYLVSSRESA--G----KPVSEVHPH---LRGL---VDLNLEPIDE 62 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC------ceEEEEeccchhc--C----CChHHhCcc---cccc---CCceeecCCH
Confidence 68999998 9999999999987631 5666 44544322 1 112211100 0000 011111 244
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++...++|+||+|+|.....++...+.. .+..||++++..-
T Consensus 63 ~~~~~~~DvVf~alP~~~s~~~~~~~~~---~G~~VIDlS~~fR 103 (346)
T TIGR01850 63 EEIAEDADVVFLALPHGVSAELAPELLA---AGVKVIDLSADFR 103 (346)
T ss_pred HHhhcCCCEEEECCCchHHHHHHHHHHh---CCCEEEeCChhhh
Confidence 4544589999999999888887776654 4788999986543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0021 Score=64.86 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=65.9
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEE--ecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMW--VFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~--~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..||+|||+ |.+|+.+|..|+..+....+-...+.++ +++.+++.++ +-.+...- . .+..++.++++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~--a~DL~d~a-----~---~~~~~v~i~~~ 113 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGV--AMELEDSL-----Y---PLLREVSIGID 113 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHH--HHHHHHhh-----h---hhcCceEEecC
Confidence 479999999 9999999999998885210000134445 6666552111 11222100 0 00113444434
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+.+++||+||++--.. .++++.+.|.++.+++.+++..+|.++
T Consensus 114 ~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD 174 (387)
T TIGR01757 114 PYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN 174 (387)
T ss_pred CHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH
Confidence 445589999999976431 144455556666567888888888654
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00071 Score=61.76 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=61.1
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe--cC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA--DP 136 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~--~~ 136 (419)
..+++.|+|+ |.+|..++..|++.| ++|++++|+.++ .+++.+.+.+.. +. .+.. ..
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g-------~~V~l~~R~~~~--~~~l~~~l~~~~-------~~----~~~~~~~~ 86 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREG-------ARVVLVGRDLER--AQKAADSLRARF-------GE----GVGAVETS 86 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-------CEEEEEcCCHHH--HHHHHHHHHhhc-------CC----cEEEeeCC
Confidence 3468999995 999999999999999 899999998765 223333332110 00 1111 12
Q ss_pred C---HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 137 D---LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 ~---~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+ ..+++.++|+||.+++.... .........+++.+++++.
T Consensus 87 ~~~~~~~~~~~~diVi~at~~g~~--~~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 87 DDAARAAAIKGADVVFAAGAAGVE--LLEKLAWAPKPLAVAADVN 129 (194)
T ss_pred CHHHHHHHHhcCCEEEECCCCCce--echhhhcccCceeEEEEcc
Confidence 2 23567889999999997543 1111222334467788774
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00092 Score=67.43 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=62.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+|.|||+|.+|...+..+...| .+|++++|++++ .+.+....... +.. ...-..++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-------a~V~v~d~~~~~------~~~l~~~~g~~-----v~~--~~~~~~~l~ 225 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-------ATVTILDINIDR------LRQLDAEFGGR-----IHT--RYSNAYEIE 225 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-------CeEEEEECCHHH------HHHHHHhcCce-----eEe--ccCCHHHHH
Confidence 4467999999999999999999999 789999998754 34443321100 000 000012345
Q ss_pred HHhcCCCEEEEccCc--chHHH-HHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPH--QFMEG-ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~--~~~~~-vl~~l~~~l~~~tiivs~~ 178 (419)
+.+.++|+||.|++. ..... +-++....++++.+|+++.
T Consensus 226 ~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 226 DAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred HHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 567899999999842 11111 1133334467788888875
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0026 Score=62.84 Aligned_cols=102 Identities=21% Similarity=0.306 Sum_probs=64.9
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe---cC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA---DP 136 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~---~~ 136 (419)
..||+|||+ |.+|+.+|..|+.++. ..++.++|+++.. ++. ..+..... +..+.. .+
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~-----~~el~L~Di~~~~--g~a--~Dl~~~~~----------~~~i~~~~~~~ 78 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPL-----VSELHLYDIANTP--GVA--ADVSHINT----------PAQVRGFLGDD 78 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----CCEEEEEecCCCC--eeE--chhhhCCc----------CceEEEEeCCC
Confidence 359999999 9999999999998773 1589999987622 111 12221110 002222 34
Q ss_pred CHHHHhcCCCEEEEccCc-----ch-----------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPH-----QF-----------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~-----~~-----------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.++++++|+||++.-. .. +.++.+.+.++ .++.+++..+|-.+
T Consensus 79 d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD 139 (323)
T PLN00106 79 QLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVN 139 (323)
T ss_pred CHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCcc
Confidence 456678999999998643 11 33334445444 46889999998664
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0043 Score=60.43 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|.++||+|||+|.+|+-+...+.+... .++ .+++++++. +. .+.-++.|.. ...++
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~------velvAVvdid~es---~g-la~A~~~Gi~-------------~~~~~ 58 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEH------LEPGAMVGIDPES---DG-LARARRLGVA-------------TSAEG 58 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCC------cEEEEEEeCChhh---HH-HHHHHHcCCC-------------cccCC
Confidence 556899999999999998888876431 455 467777653 00 1112222211 11245
Q ss_pred HHHHh-----cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 138 LENAV-----KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~-----~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
.++.+ .+.|+||++++.....+....+.+ .|..+++.+.
T Consensus 59 ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~~a~e---aGk~VID~sP 102 (302)
T PRK08300 59 IDGLLAMPEFDDIDIVFDATSAGAHVRHAAKLRE---AGIRAIDLTP 102 (302)
T ss_pred HHHHHhCcCCCCCCEEEECCCHHHHHHHHHHHHH---cCCeEEECCc
Confidence 55554 468999999999777776655543 4777777653
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0032 Score=64.13 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=62.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
.+|+|+|+|.+|...+..+...| .+|+++++++.+ .+.....|. .. .+.+++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-------a~ViV~d~d~~R------~~~A~~~G~--------------~~-~~~~e~ 254 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-------ARVIVTEVDPIC------ALQAAMEGY--------------EV-MTMEEA 254 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-------CEEEEEECChhh------HHHHHhcCC--------------EE-ccHHHH
Confidence 58999999999999999999999 789999998765 333333331 11 134566
Q ss_pred hcCCCEEEEccCcchHHHHHH-HHhccCCCCcEEEEee
Q 014757 142 VKDANMLVFVTPHQFMEGICK-RLVGKVNGDVEAISLI 178 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~-~l~~~l~~~tiivs~~ 178 (419)
+..+|+||.|+.... ++. .....++++.+++.+.
T Consensus 255 v~~aDVVI~atG~~~---~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 255 VKEGDIFVTTTGNKD---IITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HcCCCEEEECCCCHH---HHHHHHHhcCCCCcEEEEeC
Confidence 788999999987643 232 3355677888888775
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0018 Score=57.89 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=55.7
Q ss_pred CCcCeEEEECcchH-HHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNW-GSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~m-G~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-.+|.|||+|.| |..++..|.+.| .+|++.+|+.+ +
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g-------~~V~v~~r~~~----------------------------------~ 80 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRN-------ATVTVCHSKTK----------------------------------N 80 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCC-------CEEEEEECCch----------------------------------h
Confidence 44578999999997 888999999999 78999987632 1
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+.+.+.++|+||.||+...+ +-.+ .++++.++|++..
T Consensus 81 l~~~l~~aDiVIsat~~~~i--i~~~---~~~~~~viIDla~ 117 (168)
T cd01080 81 LKEHTKQADIVIVAVGKPGL--VKGD---MVKPGAVVIDVGI 117 (168)
T ss_pred HHHHHhhCCEEEEcCCCCce--ecHH---HccCCeEEEEccC
Confidence 22357789999999998542 1111 3456788888863
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0013 Score=58.11 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=55.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+++.|+|.|.+|..+|..|...| ..|++++++|-+ ..++..+ | .+. .+.+++
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G-------a~V~V~e~DPi~-----alqA~~d-G--------------f~v-~~~~~a 75 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG-------ARVTVTEIDPIR-----ALQAAMD-G--------------FEV-MTLEEA 75 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT--------EEEEE-SSHHH-----HHHHHHT-T---------------EE-E-HHHH
T ss_pred CEEEEeCCCcccHHHHHHHhhCC-------CEEEEEECChHH-----HHHhhhc-C--------------cEe-cCHHHH
Confidence 58999999999999999999999 899999998732 1333332 2 233 357788
Q ss_pred hcCCCEEEEccCcchH--HHHHHHHhccCCCCcEEEEee
Q 014757 142 VKDANMLVFVTPHQFM--EGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 142 ~~~aDlVilavp~~~~--~~vl~~l~~~l~~~tiivs~~ 178 (419)
+..+|++|.+|-...+ .+-+ ..+++++++.++.
T Consensus 76 ~~~adi~vtaTG~~~vi~~e~~----~~mkdgail~n~G 110 (162)
T PF00670_consen 76 LRDADIFVTATGNKDVITGEHF----RQMKDGAILANAG 110 (162)
T ss_dssp TTT-SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESS
T ss_pred HhhCCEEEECCCCccccCHHHH----HHhcCCeEEeccC
Confidence 9999999999987653 3333 3356788887664
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.002 Score=63.42 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=46.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.++||+|+|+|+||...+..+.++.. .++. +++|++. +.+.+ .. ++..+.+.
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd------~ELVgV~dr~~~--------~~~~~-~~------------~v~~~~d~ 54 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPD------MELVGVFSRRGA--------ETLDT-ET------------PVYAVADD 54 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCC------cEEEEEEcCCcH--------HHHhh-cC------------CccccCCH
Confidence 45899999999999999999987631 5654 5677641 11221 11 12233455
Q ss_pred HHHhcCCCEEEEccCcch
Q 014757 139 ENAVKDANMLVFVTPHQF 156 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~ 156 (419)
++...+.|+|++|+|+..
T Consensus 55 ~e~l~~iDVViIctPs~t 72 (324)
T TIGR01921 55 EKHLDDVDVLILCMGSAT 72 (324)
T ss_pred HHhccCCCEEEEcCCCcc
Confidence 556678999999999743
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0026 Score=62.94 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=64.1
Q ss_pred eEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC--CCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 63 KVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL--PSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 63 kI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~--~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||+|||+ |.+|+.+|..|+..+....+...++.++|+++.. +.++ +..+.. .. ..+...+..+++..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~--~~Dl~d-------~~-~~~~~~~~~~~~~~ 70 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGV--VMELMD-------CA-FPLLDGVVPTHDPA 70 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccccccee--Eeehhc-------cc-chhcCceeccCChH
Confidence 6999999 9999999999998774210001269999986542 1111 001111 00 00011233333434
Q ss_pred HHhcCCCEEEEccCc----ch------------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVTPH----QF------------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~----~~------------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++.++|+||++--. .. ++++.+.+.++-+++.+++..+|.++
T Consensus 71 ~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD 129 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN 129 (324)
T ss_pred HHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 568999999998643 11 34444556665446788888888654
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0027 Score=69.12 Aligned_cols=118 Identities=10% Similarity=0.062 Sum_probs=77.9
Q ss_pred EEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---------ce--EEEeCcchHH-HH
Q 014757 148 LVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---------SC--CVLMGANIAN-EI 215 (419)
Q Consensus 148 Vilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---------~~--~v~~gp~~a~-e~ 215 (419)
||+|+|...+.++++++.++++++++|.++.. + ...+.+.+.+.++. ++ .-.+|+..+. ++
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~S-v------K~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~L 73 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGS-T------KSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADL 73 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCc-c------cHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhH
Confidence 69999999999999999999999999988753 1 11222333333321 11 1223333333 56
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHH
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAG 272 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g 272 (419)
+.|....++.....+.+.++++.+++...|.++...+.-.+++..+. +.|+++.+..
T Consensus 74 f~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~ 133 (673)
T PRK11861 74 YVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALV 133 (673)
T ss_pred hCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77876655554444678889999999999988888776666665444 5666655543
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0035 Score=59.68 Aligned_cols=89 Identities=10% Similarity=0.095 Sum_probs=59.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+||+|||.|+||..++..|.+.+.. ..++. +++|++++ .+.+... ....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~----~~~l~~V~~~~~~~------~~~~~~~---------------~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQ----PCQLAALTRNAADL------PPALAGR---------------VALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCC----ceEEEEEecCCHHH------HHHhhcc---------------CcccCCHHH
Confidence 6999999999999999998764310 13443 45555433 3333321 235677887
Q ss_pred H-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 141 A-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 141 a-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
. ...+|+|+-|-....+++....+.. .+.-++.++
T Consensus 58 ll~~~~DlVVE~A~~~av~e~~~~iL~---~g~dlvv~S 93 (267)
T PRK13301 58 LLAWRPDLVVEAAGQQAIAEHAEGCLT---AGLDMIICS 93 (267)
T ss_pred HhhcCCCEEEECCCHHHHHHHHHHHHh---cCCCEEEEC
Confidence 5 4789999999999999988877654 344444444
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.004 Score=64.04 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=63.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++|+|+|.|.+|..+|..+...| .+|.++++++.+ .......|. .. .+.++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~G-------a~VIV~e~dp~r------~~eA~~~G~--------------~v-v~leE 305 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAG-------ARVIVTEIDPIC------ALQALMEGY--------------QV-LTLED 305 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCchh------hHHHHhcCC--------------ee-ccHHH
Confidence 368999999999999999999888 799999998754 122222221 11 24567
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
++..+|+||.++....+- ..+....++++.+++.+.-
T Consensus 306 al~~ADVVI~tTGt~~vI--~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 306 VVSEADIFVTTTGNKDII--MVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred HHhhCCEEEECCCCccch--HHHHHhcCCCCCEEEEcCC
Confidence 788999999987765431 1333456788899988754
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=57.27 Aligned_cols=230 Identities=17% Similarity=0.133 Sum_probs=132.8
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCc-CCccCCC-C-ccCCCe---
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNE-NVKYLPG-I-KLGKNV--- 132 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~-~~~~~~~-~-~l~~~i--- 132 (419)
.+|.++.++|+|...--+|..|...|. ..+-+++|...+ .|++.++++..-. ....-++ . .+..++
T Consensus 2 ~~m~~vLllGtGpvaIQlAv~l~~h~d------~~lg~~~r~s~r--se~l~qala~~~ql~l~~q~eahr~leg~~~id 73 (431)
T COG4408 2 HNMLPVLLLGTGPVAIQLAVDLSAHGD------ARLGLYNRPSTR--SERLKQALALTPQLYLQGQGEAHRQLEGSVTID 73 (431)
T ss_pred CcccceeEeecCcHHHHHHHHHHhccC------ceeeccCCCCch--hHHHHHHHhcCCeEEEEeccHHHHhhcCceehh
Confidence 456789999999999999999999883 788899987654 5666676664210 0000000 0 011111
Q ss_pred EecCCHHHHhcCCCEEEEccCcchHHHHHHHHhc-cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEE-----
Q 014757 133 VADPDLENAVKDANMLVFVTPHQFMEGICKRLVG-KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVL----- 206 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~-~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~----- 206 (419)
....+++++..+.+-+|+|||.+.-.+++++|-- .++.-+.+|-++..++.. ..+...+ ..+|.+..|+
T Consensus 74 ~~~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn----~lv~~~m-nk~~~daeViS~SsY 148 (431)
T COG4408 74 CYIKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSN----LLVQNLM-NKAGRDAEVISLSSY 148 (431)
T ss_pred HHHhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEeccccccc----HHHHHHH-hhhCCCceEEEeehh
Confidence 1235677777899999999999999999988642 233322333333223321 1222332 2234332222
Q ss_pred ---------eCcchHHHHHhcCceeEEEeec-CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH--------HHHHHH
Q 014757 207 ---------MGANIANEIAVEKFSEATVGYR-DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT--------LKNVVA 268 (419)
Q Consensus 207 ---------~gp~~a~e~~~g~~~~~~~~~~-~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a--------l~Ni~a 268 (419)
..|+++-.-+..+ .+-+|+. .+...++++..++...|+.+...+....+|--.. ..|=++
T Consensus 149 ~~dTk~id~~~p~~alTkavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfs 226 (431)
T COG4408 149 YADTKYIDAEQPNRALTKAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFS 226 (431)
T ss_pred cccceeecccCcchHHHHHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhH
Confidence 1244443222221 3455554 4567889999999999999999988877764221 122222
Q ss_pred HHHHh--hhc----CCC---C--ccHHHHHHHHHHHHHHHHHHHhc
Q 014757 269 IAAGF--VDG----LEM---G--NNTKAAIMRIGLREMRAFSKLLF 303 (419)
Q Consensus 269 ~~~g~--~~~----~~~---~--~n~~~~l~~~~~~E~~~la~a~g 303 (419)
+..-. ... .|+ | ......-|+..-.|+.++.+++|
T Consensus 227 L~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ 272 (431)
T COG4408 227 LQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLG 272 (431)
T ss_pred HHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 21111 110 011 1 12334456777889999999996
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0055 Score=61.02 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|||+|.+|+.+|..|+++|+ ..++++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGv------g~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGI------GKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC------CEEEEEcCCc
Confidence 3689999999999999999999994 4899999874
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0029 Score=62.99 Aligned_cols=95 Identities=12% Similarity=0.195 Sum_probs=61.3
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||||+|+|+ |..|..+.+.|++.++.. .++..+.+.++. + +.+.-.+. .+...+...
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~----~~l~~l~s~~~~--g----~~l~~~g~------------~i~v~d~~~ 58 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPV----DKLRLLASARSA--G----KELSFKGK------------ELKVEDLTT 58 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCc----ceEEEEEccccC--C----CeeeeCCc------------eeEEeeCCH
Confidence 579999995 999999999999987211 245777665443 1 12211110 122221111
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+.+.++|+||+|+|.....++...+.. .+..||+++..
T Consensus 59 ~~~~~vDvVf~A~g~g~s~~~~~~~~~---~G~~VIDlS~~ 96 (334)
T PRK14874 59 FDFSGVDIALFSAGGSVSKKYAPKAAA---AGAVVIDNSSA 96 (334)
T ss_pred HHHcCCCEEEECCChHHHHHHHHHHHh---CCCEEEECCch
Confidence 235789999999999888777766543 46788888753
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0023 Score=64.62 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=65.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
..+++|||+|..+..-...++.-. +.+ .+|++|+|++++ .+.+++.+.+. +++. ..+.+.+++++
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~---~~i-~~V~v~~r~~~~--a~~f~~~~~~~------~~~~---~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVC---PGI-DTIKIKGRGQKS--LDSFATWVAET------YPQI---TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhc---CCc-cEEEEECCCHHH--HHHHHHHHHHh------cCCC---ceEEEeCCHHH
Confidence 357999999999999998887632 000 689999999876 34444445432 1110 02556788999
Q ss_pred HhcCCCEEEEccCcch----HHHHHHHHhccCCCCcEEEE
Q 014757 141 AVKDANMLVFVTPHQF----MEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 141 a~~~aDlVilavp~~~----~~~vl~~l~~~l~~~tiivs 176 (419)
++.+||+|+.||++.. ...+++ ..++++|+.|..
T Consensus 220 av~~ADIVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 220 VVRGSDIVTYCNSGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred HHcCCCEEEEccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 9999999999997632 223331 235667876653
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0036 Score=63.30 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=63.2
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..+|||+|+|+ |..|.-+.+.|.++.. ++|+.+.++++. + +.+.....+.. +...+ .+. ..+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~------~el~~l~s~~sa--G----~~i~~~~~~l~---~~~~~-~~~-~~~ 98 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPD------FEITVMTADRKA--G----QSFGSVFPHLI---TQDLP-NLV-AVK 98 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCC------CeEEEEEChhhc--C----CCchhhCcccc---Ccccc-cee-cCC
Confidence 46679999996 9999999999998842 789988875433 1 11221111100 00110 011 112
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
.++ +.++|+||+|+|.....++...+ ..+..||+++.-.
T Consensus 99 ~~~-~~~~DvVf~Alp~~~s~~i~~~~----~~g~~VIDlSs~f 137 (381)
T PLN02968 99 DAD-FSDVDAVFCCLPHGTTQEIIKAL----PKDLKIVDLSADF 137 (381)
T ss_pred HHH-hcCCCEEEEcCCHHHHHHHHHHH----hCCCEEEEcCchh
Confidence 222 57899999999998766666554 3468899887544
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0041 Score=55.91 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=29.9
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv------g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV------GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC------CeEEEEeCCE
Confidence 68999999999999999999994 5799999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0024 Score=61.88 Aligned_cols=98 Identities=9% Similarity=0.119 Sum_probs=60.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...++.|+|+|.+|.+++..|+..|. .+|++++|+.++ ++.+.+.... .. .+....+..
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~------~~V~v~~R~~~~------a~~l~~~~~~---~~------~~~~~~~~~ 180 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGV------AEITIVNRTVER------AEELAKLFGA---LG------KAELDLELQ 180 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCC------CEEEEEeCCHHH------HHHHHHHhhh---cc------ceeecccch
Confidence 34689999999999999999999984 589999998765 3444331100 00 011211223
Q ss_pred HHhcCCCEEEEccCcchHHH--HHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEG--ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~--vl~~l~~~l~~~tiivs~~ 178 (419)
+.+.++|+||-|+|...... ...-....++++.+++++.
T Consensus 181 ~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 181 EELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred hccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence 45678999999999743211 0000012345678888875
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0027 Score=58.48 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|+..|. .+++++|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv------~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGV------GTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC------CeEEEecCCE
Confidence 3589999999999999999999994 5899999873
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0026 Score=61.79 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=51.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec---CC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD---PD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~---~~ 137 (419)
.+++.|||+|.+|.+++..|++.|. .+|++++|+.++ .+++++.+.... .+... .+
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~------~~i~I~nRt~~k--a~~La~~~~~~~-------------~~~~~~~~~~ 183 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGV------TDITVINRNPDK--LSRLVDLGVQVG-------------VITRLEGDSG 183 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCC------CeEEEEeCCHHH--HHHHHHHhhhcC-------------cceeccchhh
Confidence 4589999999999999999999994 579999999876 333333332211 01111 22
Q ss_pred HHHHhcCCCEEEEccCcc
Q 014757 138 LENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~ 155 (419)
..+.+.++|+||-|||..
T Consensus 184 ~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 184 GLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred hhhcccCCCEEEECCCCC
Confidence 233457899999999973
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0057 Score=60.82 Aligned_cols=97 Identities=12% Similarity=0.248 Sum_probs=57.8
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-C
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-P 136 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~ 136 (419)
+.|+||+|+|+ |.+|.-+.+.|.+.++.. .++..+. +.+. .++ .+.. .+. ...+. .
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~----~~l~~v~-s~~~-aG~----~l~~--------~~~----~l~~~~~ 59 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPV----GTLHLLA-SSES-AGH----SVPF--------AGK----NLRVREV 59 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCc----eEEEEEE-Cccc-CCC----eecc--------CCc----ceEEeeC
Confidence 35589999996 999999999999876211 2333443 3222 011 1111 110 11221 1
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+..+ +.++|++|+|+|......+...+.. .|..+|+++.-.
T Consensus 60 ~~~~-~~~vD~vFla~p~~~s~~~v~~~~~---~G~~VIDlS~~f 100 (336)
T PRK05671 60 DSFD-FSQVQLAFFAAGAAVSRSFAEKARA---AGCSVIDLSGAL 100 (336)
T ss_pred ChHH-hcCCCEEEEcCCHHHHHHHHHHHHH---CCCeEEECchhh
Confidence 2223 5789999999997666555555533 478899987543
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0089 Score=58.51 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=62.6
Q ss_pred EECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCHHHHhcC
Q 014757 66 VVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDLENAVKD 144 (419)
Q Consensus 66 IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~~ea~~~ 144 (419)
|||+|.+|+.+|..|+..+.. .++.++|++++++.+ .+..+...- . ..+.+++.+ .+. +.+++
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~-----~el~L~Di~~~~~~g--~a~Dl~~~~--~------~~~~~~~i~~~~~-~~~~d 64 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA-----DEIVLIDINKDKAEG--EAMDLQHAA--S------FLPTPKKIRSGDY-SDCKD 64 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC-----CEEEEEeCCCChhhH--HHHHHHHhh--c------ccCCCeEEecCCH-HHHCC
Confidence 699999999999999988741 479999998765211 122222210 0 001122333 344 45899
Q ss_pred CCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 145 ANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 145 aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
||+||++.-.. .++++.+.+.++ .++.+++..+|..+
T Consensus 65 aDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d 117 (299)
T TIGR01771 65 ADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVD 117 (299)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHH
Confidence 99999987531 144455566664 57788888888543
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0035 Score=56.10 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=33.0
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|||+|||+ |..|+.+..-..+.| |+|+.+.|++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-------HeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-------HEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-------CeeEEEEeChHh
Confidence 89999995 999999999999999 999999999866
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0063 Score=68.48 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=56.7
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCCC-------CCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccC
Q 014757 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRL-------SSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLG 129 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~-------~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~ 129 (419)
....|+||+|||+|.||...+..|++..... +.-...|++.+++.+. ++.+.+.. ++..
T Consensus 565 ~~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~------a~~la~~~------~~~~-- 630 (1042)
T PLN02819 565 VTKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKD------AKETVEGI------ENAE-- 630 (1042)
T ss_pred ccccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHH------HHHHHHhc------CCCc--
Confidence 3445779999999999999999998864100 0000137888877654 44444321 1100
Q ss_pred CCeEe-cCCHHHH---hcCCCEEEEccCcchHHHHHHHH
Q 014757 130 KNVVA-DPDLENA---VKDANMLVFVTPHQFMEGICKRL 164 (419)
Q Consensus 130 ~~i~~-~~~~~ea---~~~aDlVilavp~~~~~~vl~~l 164 (419)
.+.. .+|.++. +.++|+||.|+|......+....
T Consensus 631 -~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 631 -AVQLDVSDSESLLKYVSQVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred -eEEeecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHH
Confidence 1223 3454443 36799999999997666665443
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.011 Score=59.06 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=59.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEE-EecCCCCCCcchHHHHH-HhcCcCCc-cCCCC-c-c-CCCeEe
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRM-WVFEETLPSGEKLTDVI-NRTNENVK-YLPGI-K-L-GKNVVA 134 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l-~~r~~~~~~~~~l~~~i-~~~g~~~~-~~~~~-~-l-~~~i~~ 134 (419)
|+||+|+|+|.||..++..+.++.. .+|.. .+++++. ...+ +..|.... ..+.. . + ..++.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d------~eLvav~d~~~~~------~~~la~~~G~~~~~~~~~~~~~~~~~~i~V 68 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPD------MELVGVAKTKPDY------EARVAVEKGYPLYVADPEREKAFEEAGIPV 68 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCC------cEEEEEECCChHH------HHHHHHhcCCCccccCccccccccCCceEE
Confidence 5799999999999999998886531 56554 3333322 1222 22221100 01100 0 1 123556
Q ss_pred cCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 135 DPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
..++++...++|+||.|++.....+..+.... .|..+|+.
T Consensus 69 ~~~~~el~~~vDVVIdaT~~~~~~e~a~~~~~---aGk~VI~~ 108 (341)
T PRK04207 69 AGTIEDLLEKADIVVDATPGGVGAKNKELYEK---AGVKAIFQ 108 (341)
T ss_pred cCChhHhhccCCEEEECCCchhhHHHHHHHHH---CCCEEEEc
Confidence 66777767789999999999777666654433 34555544
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0074 Score=56.64 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=59.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc--eEEEEecC----CCCCCcchHH---HHHHhcCcCCccCCCCccCCCe
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD--EVRMWVFE----ETLPSGEKLT---DVINRTNENVKYLPGIKLGKNV 132 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~----~~~~~~~~l~---~~i~~~g~~~~~~~~~~l~~~i 132 (419)
+||.|+|+|.+|..++..|.+.|. . +++++||+ .++ .+.+. +.+.+.- .. ..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~------~~~~i~ivdr~gl~~~~r--~~~L~~~~~~la~~~------~~----~~- 86 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGA------KPENIVVVDSKGVIYEGR--EDDLNPDKNEIAKET------NP----EK- 86 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCc------CcceEEEEeCCCcccccc--chhhhHHHHHHHHHh------cc----Cc-
Confidence 689999999999999999999984 4 79999998 333 11111 1122110 00 00
Q ss_pred EecCCHHHHhcCCCEEEEccCcchH-HHHHHHHhccCCCCcEEEEeecC
Q 014757 133 VADPDLENAVKDANMLVFVTPHQFM-EGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~~~~-~~vl~~l~~~l~~~tiivs~~nG 180 (419)
...++.+++.++|+||-+++...+ ++.++.+ .++.+|+.++|.
T Consensus 87 -~~~~l~~~l~~~dvlIgaT~~G~~~~~~l~~m----~~~~ivf~lsnP 130 (226)
T cd05311 87 -TGGTLKEALKGADVFIGVSRPGVVKKEMIKKM----AKDPIVFALANP 130 (226)
T ss_pred -ccCCHHHHHhcCCEEEeCCCCCCCCHHHHHhh----CCCCEEEEeCCC
Confidence 112565677889999999984222 3333333 356778777764
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0056 Score=60.55 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCcCeEEEECcchHH-HHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWG-SVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG-~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+.++||+|||+|.++ ...+..+.+.+... .-|.++++++++ ++.+.+.-. + . +.+++
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~----~~vav~d~~~~~------a~~~a~~~~---------~--~-~~~~~ 58 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGL----ELVAVVDRDPER------AEAFAEEFG---------I--A-KAYTD 58 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCce----EEEEEecCCHHH------HHHHHHHcC---------C--C-cccCC
Confidence 467899999999555 56888888776100 246677888765 444444210 0 0 36778
Q ss_pred HHHHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 138 LENAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 138 ~~ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
.++.+.+ .|+|++|+|+..-.++..... ..|. -|-+-|.+..
T Consensus 59 ~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL---~aGk-hVl~EKPla~ 102 (342)
T COG0673 59 LEELLADPDIDAVYIATPNALHAELALAAL---EAGK-HVLCEKPLAL 102 (342)
T ss_pred HHHHhcCCCCCEEEEcCCChhhHHHHHHHH---hcCC-EEEEcCCCCC
Confidence 8887764 699999999876666553322 2344 3344565544
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0098 Score=54.83 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=55.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|.|||+|.+|...+..|.++| .+|++++++... ++ ..+...+. ... ..-.-..
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~g-------a~V~VIs~~~~~----~l-~~l~~~~~-i~~---------~~~~~~~ 65 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYG-------AHIVVISPELTE----NL-VKLVEEGK-IRW---------KQKEFEP 65 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-------CeEEEEcCCCCH----HH-HHHHhCCC-EEE---------EecCCCh
Confidence 34468999999999999999999999 899999865421 11 22222220 000 0001112
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHh
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~ 165 (419)
. .+.++|+||.||.+..+...+....
T Consensus 66 ~-~l~~adlViaaT~d~elN~~i~~~a 91 (202)
T PRK06718 66 S-DIVDAFLVIAATNDPRVNEQVKEDL 91 (202)
T ss_pred h-hcCCceEEEEcCCCHHHHHHHHHHH
Confidence 2 3678999999999988777665554
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0047 Score=55.24 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=58.6
Q ss_pred EEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014757 64 VTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 64 I~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
|.|+|+ |.+|..++..|.+.| ++|+++.|++++ .+. ..+.+.. ...+.-.++..+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-------~~V~~~~R~~~~------~~~--~~~~~~~-------~~d~~d~~~~~~al 58 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-------HEVTALVRSPSK------AED--SPGVEII-------QGDLFDPDSVKAAL 58 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-------SEEEEEESSGGG------HHH--CTTEEEE-------ESCTTCHHHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCC-------CEEEEEecCchh------ccc--ccccccc-------eeeehhhhhhhhhh
Confidence 789996 999999999999999 999999999875 343 2221110 00000012234567
Q ss_pred cCCCEEEEccCc-----chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 143 KDANMLVFVTPH-----QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 143 ~~aDlVilavp~-----~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++|.||.+++. ...+.+++.+... +...+++..+.|+.
T Consensus 59 ~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~-~~~~~v~~s~~~~~ 102 (183)
T PF13460_consen 59 KGADAVIHAAGPPPKDVDAAKNIIEAAKKA-GVKRVVYLSSAGVY 102 (183)
T ss_dssp TTSSEEEECCHSTTTHHHHHHHHHHHHHHT-TSSEEEEEEETTGT
T ss_pred hhcchhhhhhhhhccccccccccccccccc-ccccceeeeccccC
Confidence 899999999984 2334444444332 22344444444444
|
... |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0064 Score=59.74 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=83.3
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.|+||+|+|+ |.-|.-+.+.|+.... .++.++..++.. + +.+.+...+.....+ ++ .+. -++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~------ve~~~~ss~~~~--g----~~~~~~~p~l~g~~~--l~--~~~-~~~ 63 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD------VELILISSRERA--G----KPVSDVHPNLRGLVD--LP--FQT-IDP 63 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC------eEEEEeechhhc--C----CchHHhCcccccccc--cc--ccc-CCh
Confidence 3789999995 9999999999988752 466666544322 1 223332222111101 11 111 222
Q ss_pred HHH-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc--e-----EEEeC-c
Q 014757 139 ENA-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS--C-----CVLMG-A 209 (419)
Q Consensus 139 ~ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~--~-----~v~~g-p 209 (419)
++. ..+||+||+|+|...-.+++.++.. .+..||+++.-.-.. . .+..++..|.+ . ....| |
T Consensus 64 ~~~~~~~~DvvFlalPhg~s~~~v~~l~~---~g~~VIDLSadfR~~-----d-~~~ye~~Yg~~h~~~~~l~~avYGLp 134 (349)
T COG0002 64 EKIELDECDVVFLALPHGVSAELVPELLE---AGCKVIDLSADFRLK-----D-PEVYEKWYGFTHAGPELLEDAVYGLP 134 (349)
T ss_pred hhhhcccCCEEEEecCchhHHHHHHHHHh---CCCeEEECCcccccC-----C-HHHHHHhhCCCCCCchhhhcccccCc
Confidence 222 3469999999999877777666543 466699998533221 1 23334444421 1 11222 3
Q ss_pred chHHHHHhcCceeEEEeecCCHHHHHHHHHHhCC
Q 014757 210 NIANEIAVEKFSEATVGYRDNREIAEKWVQLFST 243 (419)
Q Consensus 210 ~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~ 243 (419)
..-.+-.++.......||. .....-.+.++++.
T Consensus 135 El~~e~i~~A~lIAnPGCy-pTa~iLal~PL~~~ 167 (349)
T COG0002 135 ELHREKIRGAKLIANPGCY-PTAAILALAPLVKA 167 (349)
T ss_pred ccCHHHHhcCCEeeCCCch-HHHHHHHHHHHHHc
Confidence 3332222222223344555 45666667777765
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=55.27 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=70.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
..||.|+|+|.+|.+.|..+...|+ ..++.++|-+++++.+ +.+.-++. ..+--.+++....|..
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~L-----adel~lvDv~~dklkG----E~MDLqH~-----s~f~~~~~V~~~~Dy~- 84 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGL-----ADELVLVDVNEDKLKG----EMMDLQHG-----SAFLSTPNVVASKDYS- 84 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhh-----hhceEEEecCcchhhh----hhhhhccc-----cccccCCceEecCccc-
Confidence 5699999999999999999888873 3689999998775222 12211111 1111123566666665
Q ss_pred HhcCCCEEEEccCcch------------HHHHHHHHhcc---CCCCcEEEEeecCccc
Q 014757 141 AVKDANMLVFVTPHQF------------MEGICKRLVGK---VNGDVEAISLIKGMEV 183 (419)
Q Consensus 141 a~~~aDlVilavp~~~------------~~~vl~~l~~~---l~~~tiivs~~nGi~~ 183 (419)
+-.++++||++.-..+ .-++++.+.|. .+|+++++..+|.+++
T Consensus 85 ~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDi 142 (332)
T KOG1495|consen 85 VSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDI 142 (332)
T ss_pred ccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHH
Confidence 3568999999987632 12233444442 3689999999987764
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0094 Score=52.68 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=55.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|.|||.|.+|..-+..|.+.| ++|++++ ++. .+.+.+.+ . .... .+.. ..
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~g-------a~V~VIs--p~~------~~~l~~l~-~------i~~~--~~~~-~~ 65 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTG-------AFVTVVS--PEI------CKEMKELP-Y------ITWK--QKTF-SN 65 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEc--Ccc------CHHHHhcc-C------cEEE--eccc-Ch
Confidence 34478999999999999999999999 9999996 333 24444321 0 0000 0011 12
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
++ +.++|+||.++.+..+...+.....
T Consensus 66 ~d-l~~a~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 66 DD-IKDAHLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred hc-CCCceEEEECCCCHHHHHHHHHHHH
Confidence 22 6789999999999887777766554
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0045 Score=63.68 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=48.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCC-CCCC-ceEEEEecCCCCCCc-chHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRL-SSFH-DEVRMWVFEETLPSG-EKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~-~~~~-~~V~l~~r~~~~~~~-~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|||+|||+|+. +...|.+.=... ++++ .+|.++|.++++.+. ..+++.+.+. ...+-++..|+|.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~---------~g~~~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKE---------NYPEIKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHh---------hCCCeEEEEECCH
Confidence 79999999984 443333221111 1233 689999999865110 1111222111 0112257889999
Q ss_pred HHHhcCCCEEEEccCc
Q 014757 139 ENAVKDANMLVFVTPH 154 (419)
Q Consensus 139 ~ea~~~aDlVilavp~ 154 (419)
++|+++||+||.+.-.
T Consensus 69 ~eAl~gADfVi~~irv 84 (437)
T cd05298 69 EEAFTDADFVFAQIRV 84 (437)
T ss_pred HHHhCCCCEEEEEeee
Confidence 9999999999998764
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.025 Score=54.88 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=57.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
++||+|||+|.||..++..+.+... .++ .+++++++. +. .+.-++.|.. ...++.+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~------~elvaV~d~d~es---~~-la~A~~~Gi~-------------~~~~~~e 57 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEH------LEMVAMVGIDPES---DG-LARARELGVK-------------TSAEGVD 57 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCC------cEEEEEEeCCccc---HH-HHHHHHCCCC-------------EEECCHH
Confidence 3689999999999988777765431 455 467777754 00 0111222211 1234566
Q ss_pred HHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.+. +.|+|++++|.....+......+ .|..+++.+
T Consensus 58 ~ll~~~dIDaV~iaTp~~~H~e~a~~al~---aGk~VIdek 95 (285)
T TIGR03215 58 GLLANPDIDIVFDATSAKAHARHARLLAE---LGKIVIDLT 95 (285)
T ss_pred HHhcCCCCCEEEECCCcHHHHHHHHHHHH---cCCEEEECC
Confidence 5553 58999999999777666655443 466666554
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.013 Score=60.53 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=61.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+++|.|+|+|.+|..++..|.+.| ++|++++++++. .+.+.+.+..... +... .++.+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~-------~~v~vid~~~~~------~~~~~~~~~~~~~-----i~gd---~~~~~ 288 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEG-------YSVKLIERDPER------AEELAEELPNTLV-----LHGD---GTDQE 288 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCHHH------HHHHHHHCCCCeE-----EECC---CCCHH
Confidence 4688999999999999999999999 899999998765 5666553211100 0000 01221
Q ss_pred ---H-HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEE
Q 014757 140 ---N-AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 140 ---e-a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs 176 (419)
+ .+.++|.||+++++....-....+...+....+++-
T Consensus 289 ~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~ 329 (453)
T PRK09496 289 LLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIAL 329 (453)
T ss_pred HHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEE
Confidence 1 246899999999875444333334444444444443
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0047 Score=63.34 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=49.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCC-CCC-ceEEEEecCCCCCC-cchHHHHHHh-cCcCCccCCCCccCCCeEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLS-SFH-DEVRMWVFEETLPS-GEKLTDVINR-TNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~-~~~-~~V~l~~r~~~~~~-~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|||+|||+|+. +...|.+.=...+ +++ .+|.++|.++++.+ -..+++.+.+ .|. +-.+..|+|
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~----------~~~v~~ttD 67 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGA----------DIKFEKTMD 67 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCC----------CeEEEEeCC
Confidence 79999999983 4444333211112 233 68999999986510 0111222222 121 124678999
Q ss_pred HHHHhcCCCEEEEccCc
Q 014757 138 LENAVKDANMLVFVTPH 154 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~ 154 (419)
.++|+++||+||.++-.
T Consensus 68 ~~~Al~gADfVi~~irv 84 (425)
T cd05197 68 LEDAIIDADFVINQFRV 84 (425)
T ss_pred HHHHhCCCCEEEEeeec
Confidence 99999999999998864
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0059 Score=50.50 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=49.9
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH---HH
Q 014757 64 VTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL---EN 140 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~---~e 140 (419)
|.|+|.|.+|..++..|.+.+ .+|.+++++++. ++.+.+.+....+ ++ .+++ ++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-------~~vvvid~d~~~------~~~~~~~~~~~i~-gd---------~~~~~~l~~ 57 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-------IDVVVIDRDPER------VEELREEGVEVIY-GD---------ATDPEVLER 57 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-------SEEEEEESSHHH------HHHHHHTTSEEEE-S----------TTSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-------CEEEEEECCcHH------HHHHHhccccccc-cc---------chhhhHHhh
Confidence 679999999999999999966 699999998766 6777765532110 00 1122 11
Q ss_pred -HhcCCCEEEEccCcchHH
Q 014757 141 -AVKDANMLVFVTPHQFME 158 (419)
Q Consensus 141 -a~~~aDlVilavp~~~~~ 158 (419)
-+.++|.|++++++....
T Consensus 58 a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 58 AGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp TTGGCESEEEEESSSHHHH
T ss_pred cCccccCEEEEccCCHHHH
Confidence 256899999999975443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0095 Score=49.83 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=54.0
Q ss_pred CeEEEEC----cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 62 SKVTVVG----SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIG----aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
++|+||| .+.+|..+...|.++| ++|+.++.+.+. +. +.+...+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G-------~~v~~Vnp~~~~---------i~----------------G~~~y~s 48 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAG-------YEVYPVNPKGGE---------IL----------------GIKCYPS 48 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT--------EEEEESTTCSE---------ET----------------TEE-BSS
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCC-------CEEEEECCCceE---------EC----------------cEEeecc
Confidence 4799999 6999999999999999 899988765422 11 2456677
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhcc
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGK 167 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~ 167 (419)
++|.-...|++++++|+..+.++++++...
T Consensus 49 l~e~p~~iDlavv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 49 LAEIPEPIDLAVVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp GGGCSST-SEEEE-S-HHHHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEEEcCHHHHHHHHHHHHHc
Confidence 776336899999999999999999998764
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.017 Score=57.73 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=56.3
Q ss_pred cCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
++||+|||+|.||.. .+..+.+... .++. ++++++++ ..+. ++ ..+.++|.
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~------~~l~av~d~~~~~---------~~~~------~~------~~~~~~~~ 56 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPG------LELAAVSSSDATK---------VKAD------WP------TVTVVSEP 56 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCC------CEEEEEECCCHHH---------HHhh------CC------CCceeCCH
Confidence 479999999999974 4565655421 5654 56665432 1211 00 12456788
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++.+. +.|+|++|+|+....++...... .|.-|+ +-|.+..
T Consensus 57 ~ell~~~~vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~ 99 (346)
T PRK11579 57 QHLFNDPNIDLIVIPTPNDTHFPLAKAALE---AGKHVV-VDKPFTV 99 (346)
T ss_pred HHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---CCCeEE-EeCCCCC
Confidence 88775 57999999998766665544433 344443 4565543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=54.61 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=30.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
..+|+|||+|.+|+.++..|++.|. .+++++|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gv------g~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGV------GNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC------CeEEEEeCC
Confidence 4589999999999999999999995 579999987
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0059 Score=63.69 Aligned_cols=71 Identities=11% Similarity=0.228 Sum_probs=49.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++++|+|+|.+|.+++..|++.| .+|++++|+.++ .+.+.+.. +. ......+..
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G-------~~V~i~~R~~~~------~~~la~~~-~~----------~~~~~~~~~ 386 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAG-------AELLIFNRTKAH------AEALASRC-QG----------KAFPLESLP 386 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHHh-cc----------ceechhHhc
Confidence 4468999999999999999999999 899999998655 34443311 00 000112222
Q ss_pred HHhcCCCEEEEccCcc
Q 014757 140 NAVKDANMLVFVTPHQ 155 (419)
Q Consensus 140 ea~~~aDlVilavp~~ 155 (419)
+ +.++|+||.|+|..
T Consensus 387 ~-l~~~DiVInatP~g 401 (477)
T PRK09310 387 E-LHRIDIIINCLPPS 401 (477)
T ss_pred c-cCCCCEEEEcCCCC
Confidence 2 46899999999974
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.011 Score=57.23 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=55.6
Q ss_pred CcCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-++|.|||.|. +|.++|..|.+.| ..|++..+.. .++
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~g-------atVtv~~s~t----------------------------------~~l 195 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKN-------ASVTILHSRS----------------------------------KDM 195 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC-------CeEEEEeCCc----------------------------------hhH
Confidence 346899999988 9999999999998 8899887532 123
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++.+++||+||.+++...+ +.. .+++++++||++.
T Consensus 196 ~~~~~~ADIVIsAvg~p~~---i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 196 ASYLKDADVIVSAVGKPGL---VTK--DVVKEGAVIIDVG 230 (286)
T ss_pred HHHHhhCCEEEECCCCCcc---cCH--HHcCCCcEEEEcC
Confidence 4457889999999987543 211 3467889999874
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.018 Score=49.71 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=29.6
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
||.|+|+|.+|+.++..|++.|. ..++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv------~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV------GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC------CEEEEEcCCC
Confidence 68999999999999999999994 5799998763
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.019 Score=57.37 Aligned_cols=95 Identities=9% Similarity=0.174 Sum_probs=59.1
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDL 138 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~ 138 (419)
.+||+|+|+ |..|.-+.+.|.+.++.. .++..+...+.. + +.+...+. .+... .+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~----~~l~~las~rsa--G----k~~~~~~~------------~~~v~~~~~ 64 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPY----SSLKMLASARSA--G----KKVTFEGR------------DYTVEELTE 64 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCc----ceEEEEEccCCC--C----CeeeecCc------------eeEEEeCCH
Confidence 479999995 999999999999877211 244444433221 1 11111111 11221 233
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+ .+.++|+||+|+|......+...+.. .+..||+++.-.
T Consensus 65 ~-~~~~~D~vf~a~p~~~s~~~~~~~~~---~g~~VIDlS~~f 103 (344)
T PLN02383 65 D-SFDGVDIALFSAGGSISKKFGPIAVD---KGAVVVDNSSAF 103 (344)
T ss_pred H-HHcCCCEEEECCCcHHHHHHHHHHHh---CCCEEEECCchh
Confidence 3 45789999999999877777665543 578999988533
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0072 Score=64.94 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=62.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH--
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL-- 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~-- 138 (419)
.++|.|+|.|.+|..+++.|.+.| ++++++|.++++ ++.+++.|.+. ++++ .+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-------~~vvvID~d~~~------v~~~~~~g~~v-~~GD---------at~~~~ 456 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK-------MRITVLERDISA------VNLMRKYGYKV-YYGD---------ATQLEL 456 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC-------CCEEEEECCHHH------HHHHHhCCCeE-EEee---------CCCHHH
Confidence 468999999999999999999999 899999999876 67776655321 1111 1222
Q ss_pred -HH-HhcCCCEEEEccCcchHH-HHHHHHhccCCCCcEEEEe
Q 014757 139 -EN-AVKDANMLVFVTPHQFME-GICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 139 -~e-a~~~aDlVilavp~~~~~-~vl~~l~~~l~~~tiivs~ 177 (419)
++ -+++||.+++++++.... .++..++.. .|+..|+.-
T Consensus 457 L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~-~p~~~IiaR 497 (601)
T PRK03659 457 LRAAGAEKAEAIVITCNEPEDTMKIVELCQQH-FPHLHILAR 497 (601)
T ss_pred HHhcCCccCCEEEEEeCCHHHHHHHHHHHHHH-CCCCeEEEE
Confidence 11 156899999999985443 444444443 345444443
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0086 Score=63.78 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=61.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH--
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL-- 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~-- 138 (419)
.-+|.|+|.|.+|..+++.|.++| ++|.++|.++++ ++.+++.+.+..+ ++ .+++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g-------~~vvvId~d~~~------~~~~~~~g~~~i~-GD---------~~~~~~ 473 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG-------IPLVVIETSRTR------VDELRERGIRAVL-GN---------AANEEI 473 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC-------CCEEEEECCHHH------HHHHHHCCCeEEE-cC---------CCCHHH
Confidence 357999999999999999999999 999999998876 6777664432110 00 1122
Q ss_pred -HH-HhcCCCEEEEccCcchHH-HHHHHHhccCCCCcEEEEee
Q 014757 139 -EN-AVKDANMLVFVTPHQFME-GICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 139 -~e-a~~~aDlVilavp~~~~~-~vl~~l~~~l~~~tiivs~~ 178 (419)
++ -++++|.++++++++... .+...++.. .++..++.-.
T Consensus 474 L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~-~~~~~iiar~ 515 (558)
T PRK10669 474 MQLAHLDCARWLLLTIPNGYEAGEIVASAREK-RPDIEIIARA 515 (558)
T ss_pred HHhcCccccCEEEEEcCChHHHHHHHHHHHHH-CCCCeEEEEE
Confidence 11 145899999999875433 344444443 3444454443
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.019 Score=57.09 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+..+||+|||+ |..|.-+.+.|.+..+. ..++..+..+... ++ .+.- .+. .+.+. +
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~sa--G~----~~~~--------~~~----~~~v~-~ 58 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFP----VGELYALASEESA--GE----TLRF--------GGK----SVTVQ-D 58 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcC--Cc----eEEE--------CCc----ceEEE-e
Confidence 45689999996 99999999999985421 1466666544322 11 1111 111 12232 2
Q ss_pred HHH-HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 138 LEN-AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 138 ~~e-a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+++ ...++|++|+|+|...-.++...+.. .+..||+++.-.
T Consensus 59 ~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~g~~VIDlS~~f 100 (336)
T PRK08040 59 AAEFDWSQAQLAFFVAGREASAAYAEEATN---AGCLVIDSSGLF 100 (336)
T ss_pred CchhhccCCCEEEECCCHHHHHHHHHHHHH---CCCEEEECChHh
Confidence 222 23689999999999877777666543 588999988543
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0052 Score=62.23 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=50.4
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhc--CcCCccCCCCccCCCeEe-cCC--
Q 014757 64 VTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRT--NENVKYLPGIKLGKNVVA-DPD-- 137 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~--g~~~~~~~~~~l~~~i~~-~~~-- 137 (419)
|.|+|+|.+|..++..|++.+. + +|++.+|+.++ ++.+.+. +.+... +.. ..|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~------~~~v~va~r~~~~------~~~~~~~~~~~~~~~---------~~~d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP------FEEVTVADRNPEK------AERLAEKLLGDRVEA---------VQVDVNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC------E-EEEEEESSHHH------HHHHHT--TTTTEEE---------EE--TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCC------CCcEEEEECCHHH------HHHHHhhccccceeE---------EEEecCCHH
Confidence 7899999999999999999872 4 89999999765 4444431 111110 111 122
Q ss_pred -HHHHhcCCCEEEEccCcchHHHHHHH
Q 014757 138 -LENAVKDANMLVFVTPHQFMEGICKR 163 (419)
Q Consensus 138 -~~ea~~~aDlVilavp~~~~~~vl~~ 163 (419)
+.+.++++|+||-|+++..-..+++.
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~ 86 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARA 86 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHH
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHH
Confidence 34567899999999988655555433
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.025 Score=58.57 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=64.7
Q ss_pred CCcCeEEEECc----chHHHHHHHHHHHcCCCCCCCCc--eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCe
Q 014757 59 LHKSKVTVVGS----GNWGSVASKLIASNTLRLSSFHD--EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNV 132 (419)
Q Consensus 59 ~~~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i 132 (419)
....+|+|||+ |.+|..+...|.+.| + +|+.++...+ .+. ++
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~g-------f~g~v~~Vnp~~~---------~i~----------------G~ 52 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGG-------YKGKIYPVNPKAG---------EIL----------------GV 52 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCC-------CCCcEEEECCCCC---------ccC----------------Cc
Confidence 34578999999 889999999999988 5 5655554321 121 23
Q ss_pred EecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 133 VADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++..+.++.-...|++++++|...+.++++++... +- ..++.++.|+..
T Consensus 53 ~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~-gv-~~~vi~s~gf~e 101 (447)
T TIGR02717 53 KAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK-GV-KGAVVITAGFKE 101 (447)
T ss_pred cccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc-CC-CEEEEECCCccc
Confidence 45667777555689999999999999999887663 22 344556677754
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.029 Score=55.14 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=54.8
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|+||+||| +|..|.-+.+.|.++.. .++.....+... . + .+.+
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~------~~l~~~~s~~~~--------~-------------------~---~~~~ 45 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD------IELLSIPEAKRK--------D-------------------A---AARR 45 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC------eEEEEEecCCCC--------c-------------------c---cCch
Confidence 57999999 59999999999988751 333333322111 0 0 1112
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+...++|+||+|+|...-.++..++.. .++.||+++.-
T Consensus 46 ~~~~~~DvvFlalp~~~s~~~~~~~~~---~g~~VIDlSad 83 (313)
T PRK11863 46 ELLNAADVAILCLPDDAAREAVALIDN---PATRVIDASTA 83 (313)
T ss_pred hhhcCCCEEEECCCHHHHHHHHHHHHh---CCCEEEECChh
Confidence 334679999999999877777766643 57889998753
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.012 Score=60.25 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=48.6
Q ss_pred CeEEEECcchHHH-HHHHHHHHcCCCCCCCC-ceEEEEecC-CCCCC-cchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 62 SKVTVVGSGNWGS-VASKLIASNTLRLSSFH-DEVRMWVFE-ETLPS-GEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~-~~V~l~~r~-~~~~~-~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|||+|||+|+.-+ .+...|++.. ++++ .+|.++|.+ +++.+ -..+++.+.+.. ..+..+..++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~---~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~---------~~~~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRY---EELPVTELVLVDIDEEEKLEIVGALAKRMVKKA---------GLPIKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhcc---ccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh---------CCCeEEEEeCC
Confidence 7999999999643 2233344421 1222 689999998 55410 011112221111 11124678999
Q ss_pred HHHHhcCCCEEEEccCc
Q 014757 138 LENAVKDANMLVFVTPH 154 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~ 154 (419)
.++++.+||+||.+.-.
T Consensus 69 ~~~al~gadfVi~~~~v 85 (419)
T cd05296 69 RREALEGADFVFTQIRV 85 (419)
T ss_pred HHHHhCCCCEEEEEEee
Confidence 99999999999998754
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.016 Score=54.48 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=30.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.+|..|++.|. ..++++|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gv------g~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGV------GKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC------CEEEEEcCCE
Confidence 3589999999999999999999995 6889998753
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.023 Score=55.22 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=63.0
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc----------------chHHHHHHhcCcCCcc-
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG----------------EKLTDVINRTNENVKY- 122 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~----------------~~l~~~i~~~g~~~~~- 122 (419)
||.|+|+|.+|+.+|..|+..|. ..++++|.+.-. +.+ +.+.+.+++..-..+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV------g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~ 74 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV------RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDAT 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC------CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEE
Confidence 68999999999999999999995 678888865311 000 1122222221100000
Q ss_pred -------CCCCccCCC----eE-ecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 123 -------LPGIKLGKN----VV-ADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 123 -------~~~~~l~~~----i~-~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
-++..+... .+ -..+.++.++++|+||.|+-+...+.++..+.... +.++++..-|
T Consensus 75 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~--~k~~I~aalG 142 (307)
T cd01486 75 GIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAK--NKLVINAALG 142 (307)
T ss_pred EeeeeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHh--CCcEEEEEec
Confidence 000000000 00 01124566789999999998888888877766542 4466654433
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.018 Score=57.42 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=31.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|||+|.+|+.+|..|+++|. .+++++|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGv------g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGV------GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC------CeEEEEeCCc
Confidence 4689999999999999999999994 5899999874
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.029 Score=58.69 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=62.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCC---CccCCC-eEecC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPG---IKLGKN-VVADP 136 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~---~~l~~~-i~~~~ 136 (419)
..|+.|+|+|.+|...+..+...| ..|+++++++++ .+..++.|......+. ..-..+ .+..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lG-------A~V~v~d~~~~r------le~a~~lGa~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLG-------AIVRAFDTRPEV------KEQVQSMGAEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcCCeEEeccccccccccccceeecC
Confidence 369999999999999999999999 789999988765 3444444432100000 000000 11111
Q ss_pred -C--------HHHHhcCCCEEEEcc-----CcchHHHHHHHHhccCCCCcEEEEee
Q 014757 137 -D--------LENAVKDANMLVFVT-----PHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 -~--------~~ea~~~aDlVilav-----p~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+ ..+.++++|+||.|+ |... -+.++....++++.+||++.
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~--Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPK--LITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCe--eehHHHHhhCCCCCEEEEee
Confidence 1 223467899999999 4431 12233345567889998875
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.051 Score=49.83 Aligned_cols=35 Identities=9% Similarity=0.192 Sum_probs=31.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|+.+|. ..++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV------g~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI------GSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC------CEEEEEECCc
Confidence 3689999999999999999999995 6799999763
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.037 Score=55.40 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=60.1
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPD 137 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~ 137 (419)
.|+||+|+| .|.+|..+...|.+... .++..+.++++. .++.+ ..+-..... ..+++. . ..+.+ ..+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~------~el~~~~~s~~~-~G~~~-~~~~~~~~~-~~~~~~-~-~~~~v~~~~ 70 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPW------FEVTALAASERS-AGKTY-GEAVRWQLD-GPIPEE-V-ADMEVVSTD 70 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCC------ceEEEEEcChhh-cCCcc-ccccccccc-cccccc-c-cceEEEeCC
Confidence 368999998 79999999999987652 477777555432 01111 100000000 000000 0 11222 234
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+++ +.++|+||.|+|......+.+.+.. .+..+|+++.
T Consensus 71 ~~~-~~~~DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 71 PEA-VDDVDIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred HHH-hcCCCEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 443 5789999999999776666655543 4677887764
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.067 Score=50.78 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=86.3
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.||||+|.|+ |.||..+.+.+.+... .+ +-.++|........+. ..+. |.. .-++.++++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~------~~L~aa~~~~~~~~~g~d~-ge~~--g~~---------~~gv~v~~~ 62 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPD------LELVAAFDRPGSLSLGSDA-GELA--GLG---------LLGVPVTDD 62 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCC------ceEEEEEecCCccccccch-hhhc--ccc---------ccCceeecc
Confidence 3789999998 9999999999988752 34 3456666543111111 1111 110 012345566
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHh
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAV 217 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~ 217 (419)
+..+..++|++|=.+-+....+.++.... .+..+|.-|+|+..++ .+.+++.. ....++..|+++-
T Consensus 63 ~~~~~~~~DV~IDFT~P~~~~~~l~~~~~---~~~~lVIGTTGf~~e~------~~~l~~~a-~~v~vv~a~NfSi---- 128 (266)
T COG0289 63 LLLVKADADVLIDFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQ------LEKLREAA-EKVPVVIAPNFSL---- 128 (266)
T ss_pred hhhcccCCCEEEECCCchhhHHHHHHHHH---cCCCeEEECCCCCHHH------HHHHHHHH-hhCCEEEeccchH----
Confidence 66666789999988877766666655443 3556677777887531 12333321 2245666676643
Q ss_pred cCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014757 218 EKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 218 g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
|. ..-...+++..++|. ++.+++
T Consensus 129 Gv--------nll~~l~~~aak~l~--~~DiEI 151 (266)
T COG0289 129 GV--------NLLFKLAEQAAKVLD--DYDIEI 151 (266)
T ss_pred HH--------HHHHHHHHHHHHhcC--CCCEEe
Confidence 11 002345667778887 666655
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.018 Score=59.05 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=32.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..++|.|||.|.+|.++|..|.+.| ++|+++|+++..
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G-------~~V~g~D~~~~~ 38 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKG-------VYVIGVDKSLEA 38 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCC-------CEEEEEeCCccc
Confidence 4468999999999999999999999 899999987643
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.013 Score=57.54 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=48.6
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||.|+| +|.+|+.++..|.++| ++|++.+|+++. ...+...+.... ...+.-..+..+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-------~~V~~l~R~~~~------~~~l~~~~v~~v-------~~Dl~d~~~l~~ 60 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-------YQVRCLVRNLRK------ASFLKEWGAELV-------YGDLSLPETLPP 60 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-------CeEEEEEcChHH------hhhHhhcCCEEE-------ECCCCCHHHHHH
Confidence 6899999 5999999999999999 999999998644 233332221100 001111123455
Q ss_pred HhcCCCEEEEccCc
Q 014757 141 AVKDANMLVFVTPH 154 (419)
Q Consensus 141 a~~~aDlVilavp~ 154 (419)
++.++|+||-++..
T Consensus 61 al~g~d~Vi~~~~~ 74 (317)
T CHL00194 61 SFKGVTAIIDASTS 74 (317)
T ss_pred HHCCCCEEEECCCC
Confidence 67899999987653
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0082 Score=54.26 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=47.2
Q ss_pred eEEEECcchHHHHH--HHHHHHcCCCCCCCC-ceEEEEecCCCCCC-cchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 63 KVTVVGSGNWGSVA--SKLIASNTLRLSSFH-DEVRMWVFEETLPS-GEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 63 kI~IIGaG~mG~~l--A~~La~~G~~~~~~~-~~V~l~~r~~~~~~-~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
||+|||+|+.-.+. -..+... ++++ .++.++|+++++++ -.++++.+.+.. ..+.++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~----~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~---------~~~~~v~~ttd~ 67 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT----EELSGSEIVLMDIDEERLEIVERLARRMVEEA---------GADLKVEATTDR 67 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT----TTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC---------TTSSEEEEESSH
T ss_pred CEEEECCchHhhHHHHHHHHhcC----ccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc---------CCCeEEEEeCCH
Confidence 79999999876553 2223332 2233 48999999986511 112223332211 112357789999
Q ss_pred HHHhcCCCEEEEccCcc
Q 014757 139 ENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~ 155 (419)
++++++||+||.++-.-
T Consensus 68 ~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 68 REALEGADFVINQIRVG 84 (183)
T ss_dssp HHHHTTESEEEE---TT
T ss_pred HHHhCCCCEEEEEeeec
Confidence 99999999999998763
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.037 Score=52.12 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|+..|. ..++++|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv------g~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV------GRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC------CEEEEEcCCc
Confidence 3589999999999999999999995 6899998765
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.024 Score=54.84 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=54.8
Q ss_pred cCeEEEECcchH-HHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNW-GSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~m-G~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+|||.|.+ |.+++..|.+.| ..|+++... +.++.
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~-------atVt~~hs~----------------------------------t~~l~ 196 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAG-------ATVTICHSK----------------------------------TRDLA 196 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC-------CEEEEecCC----------------------------------CCCHH
Confidence 368999998887 999999999998 788876432 12344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.+++...+ +. ..++++++++|++.
T Consensus 197 ~~~~~ADIVV~avG~~~~---i~--~~~ik~gavVIDVG 230 (285)
T PRK14189 197 AHTRQADIVVAAVGKRNV---LT--ADMVKPGATVIDVG 230 (285)
T ss_pred HHhhhCCEEEEcCCCcCc---cC--HHHcCCCCEEEEcc
Confidence 567899999999996543 22 25678899999873
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.074 Score=48.83 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=31.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|+..|. .+++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV------g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI------DSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC------CEEEEEECCc
Confidence 3689999999999999999999996 7899999763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.045 Score=54.59 Aligned_cols=100 Identities=19% Similarity=0.286 Sum_probs=57.1
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEE-ecCCCCCCcchHHHHHHhcCcCCcc--CCCCccCCCeEec-C
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMW-VFEETLPSGEKLTDVINRTNENVKY--LPGIKLGKNVVAD-P 136 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~-~r~~~~~~~~~l~~~i~~~g~~~~~--~~~~~l~~~i~~~-~ 136 (419)
|||+|+|+ |.||..++..|.+... .++..+ +++++. ++.+.+... ...+ .++ .+ ..+.+. .
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~------~~l~~v~~~~~~~--g~~~~~~~~----~~~~~~~~~-~~-~~~~~~~~ 66 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPY------FELAKVVASPRSA--GKRYGEAVK----WIEPGDMPE-YV-RDLPIVEP 66 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC------ceEEEEEEChhhc--CCcchhhcc----ccccCCCcc-cc-ceeEEEeC
Confidence 68999995 9999999999988752 466655 433221 111111100 0000 000 00 112222 2
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
++ +...++|+||+|+|.....++.+.+.. .+..+|+++.
T Consensus 67 ~~-~~~~~~DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg 105 (341)
T TIGR00978 67 EP-VASKDVDIVFSALPSEVAEEVEPKLAE---AGKPVFSNAS 105 (341)
T ss_pred CH-HHhccCCEEEEeCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 33 345789999999999877776655543 4777887764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.035 Score=57.31 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=48.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++|.|+|+|.+|.++|..|++.| ++|++++++... ..++..+.+.+.+.. +.......
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G-------~~V~~~d~~~~~-~~~~~~~~l~~~~~~------------~~~~~~~~ 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG-------AKVILTDEKEED-QLKEALEELGELGIE------------LVLGEYPE 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCchH-HHHHHHHHHHhcCCE------------EEeCCcch
Confidence 3478999999999999999999999 999999987522 011112333332321 11112222
Q ss_pred HHhcCCCEEEEccCc
Q 014757 140 NAVKDANMLVFVTPH 154 (419)
Q Consensus 140 ea~~~aDlVilavp~ 154 (419)
+...++|+||.++-.
T Consensus 64 ~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 64 EFLEGVDLVVVSPGV 78 (450)
T ss_pred hHhhcCCEEEECCCC
Confidence 335679999998764
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.018 Score=62.20 Aligned_cols=92 Identities=12% Similarity=0.249 Sum_probs=61.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH--
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL-- 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~-- 138 (419)
..+|-|+|.|.+|..+++.|.++| ++++++|.++++ ++.+++.|.+. ++++ .+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g-------~~vvvID~d~~~------v~~~~~~g~~v-~~GD---------at~~~~ 456 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG-------VKMTVLDHDPDH------IETLRKFGMKV-FYGD---------ATRMDL 456 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC-------CCEEEEECCHHH------HHHHHhcCCeE-EEEe---------CCCHHH
Confidence 468999999999999999999999 899999999876 77777655321 1111 1222
Q ss_pred -HH-HhcCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEE
Q 014757 139 -EN-AVKDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 139 -~e-a~~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs 176 (419)
++ -+.++|.+|+++.+.. ...++..++.. .|+..++.
T Consensus 457 L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~-~p~~~iia 496 (621)
T PRK03562 457 LESAGAAKAEVLINAIDDPQTSLQLVELVKEH-FPHLQIIA 496 (621)
T ss_pred HHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh-CCCCeEEE
Confidence 11 1458999999999844 33444444443 34444443
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.037 Score=53.93 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=58.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC---CCCCcchHHHHHHhcCcCCccCCCCcc-CCCeEec
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE---TLPSGEKLTDVINRTNENVKYLPGIKL-GKNVVAD 135 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~---~~~~~~~l~~~i~~~g~~~~~~~~~~l-~~~i~~~ 135 (419)
..+++.|+|+|.+|.+++..|++.|. .+|++++|++ ++ .+++++.+.+.+. .... ...+.-.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~------~~V~I~~R~~~~~~~--a~~l~~~l~~~~~------~~~~~~~d~~~~ 190 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGA------KEITIFNIKDDFYER--AEQTAEKIKQEVP------ECIVNVYDLNDT 190 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC------CEEEEEeCCchHHHH--HHHHHHHHhhcCC------CceeEEechhhh
Confidence 34579999999999999999999992 3599999986 33 2333444433211 0000 0000001
Q ss_pred CCHHHHhcCCCEEEEccCcchH---HHH-HHHHhccCCCCcEEEEee
Q 014757 136 PDLENAVKDANMLVFVTPHQFM---EGI-CKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~---~~v-l~~l~~~l~~~tiivs~~ 178 (419)
.+.++.+..+|+||-|||.-.. ... +.. ...+.++.+++++.
T Consensus 191 ~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~v 236 (289)
T PRK12548 191 EKLKAEIASSDILVNATLVGMKPNDGETNIKD-TSVFRKDLVVADTV 236 (289)
T ss_pred hHHHhhhccCCEEEEeCCCCCCCCCCCCCCCc-HHhcCCCCEEEEec
Confidence 1222345678999999986211 110 000 12355677787775
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.024 Score=54.94 Aligned_cols=98 Identities=16% Similarity=0.247 Sum_probs=63.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...++.|+|+|-.+.+.+..|++.|. .++++++|+.++ ++++++.+.+.+... ......+.+
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~------~~i~V~NRt~~r--a~~La~~~~~~~~~~----------~~~~~~~~~ 186 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA------KRITVVNRTRER--AEELADLFGELGAAV----------EAAALADLE 186 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC------CEEEEEeCCHHH--HHHHHHHhhhccccc----------ccccccccc
Confidence 34689999999999999999999994 689999999876 444444444322100 011122222
Q ss_pred HHhcCCCEEEEccCcchH----HHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFM----EGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~----~~vl~~l~~~l~~~tiivs~~ 178 (419)
. ..++|+||=|||.--- ...+. ...++++.++.++.
T Consensus 187 ~-~~~~dliINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~v 226 (283)
T COG0169 187 G-LEEADLLINATPVGMAGPEGDSPVP--AELLPKGAIVYDVV 226 (283)
T ss_pred c-ccccCEEEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence 2 2269999999997211 11222 34566788888875
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.11 Score=41.74 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=52.6
Q ss_pred cCeEEEECcchHHHHHHHHH-HHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSGNWGSVASKLI-ASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~L-a~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..||.|+|+|.+|.+++..+ ...| +. +.++|.++++ . |... .++.+..+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g-------~~i~~~~dv~~~~------~------G~~i---------~gipV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRG-------FGIVAVFDVDPEK------I------GKEI---------GGIPVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHC-------ECEEEEEEECTTT------T------TSEE---------TTEEEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcC-------CCCEEEEEcCCCc------c------CcEE---------CCEEeeccH
Confidence 45899999999999987544 3445 44 5678888765 1 1100 124455555
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014757 139 ENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+++.+ +.|+.+++||+....++..++..
T Consensus 55 ~~l~~~~~i~iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 55 DELEEFIEIDIAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp HHHHHHCTTSEEEEES-HHHHHHHHHHHHH
T ss_pred HHhhhhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 55444 39999999999988888877665
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.036 Score=55.22 Aligned_cols=93 Identities=15% Similarity=0.235 Sum_probs=58.8
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCce---EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDE---VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~---V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+||+|||+ |.+|.-+.+.|.+... .+ +.++...... ++ .+.- .+..+ .+.. .+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~------f~v~~l~~~aS~~sa--Gk----~~~~--------~~~~l--~v~~-~~ 62 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETK------FNIAEVTLLSSKRSA--GK----TVQF--------KGREI--IIQE-AK 62 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCC------CCcccEEEEECcccC--CC----Ceee--------CCcce--EEEe-CC
Confidence 69999996 9999999999995331 45 5556544322 11 1111 11110 1222 24
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+++ ..++|++|+|+|.....++...+.. .|..||+++.-.
T Consensus 63 ~~~-~~~~Divf~a~~~~~s~~~~~~~~~---~G~~VID~Ss~f 102 (347)
T PRK06728 63 INS-FEGVDIAFFSAGGEVSRQFVNQAVS---SGAIVIDNTSEY 102 (347)
T ss_pred HHH-hcCCCEEEECCChHHHHHHHHHHHH---CCCEEEECchhh
Confidence 433 5789999999999877777666543 578999987543
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.024 Score=43.79 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=31.8
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
||.|||+|..|.-+|..|++.| .+|+++.+++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-------~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-------KEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-------SEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC-------cEEEEEeccchh
Confidence 6899999999999999999999 899999998765
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.035 Score=53.86 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=53.2
Q ss_pred cCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.|||.|. +|.+++..|.+.| ..|++++|.. +. ++
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~g-------atVtv~~~~t---------~~-------------------------L~ 197 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNAN-------ATVTICHSRT---------QN-------------------------LP 197 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCC-------CEEEEEeCCc---------hh-------------------------HH
Confidence 35899999997 9999999999998 7899988732 22 22
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++++|+||.|++... .+. ..+++++++++++.
T Consensus 198 ~~~~~aDIvI~AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 198 ELVKQADIIVGAVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred HHhccCCEEEEccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 33578999999996433 121 24467899998873
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.035 Score=55.33 Aligned_cols=91 Identities=12% Similarity=0.267 Sum_probs=57.5
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCHHH
Q 014757 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDLEN 140 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~~e 140 (419)
||+|+| .|..|..+...|.++++.. .++.++.+.++. + +.+...+. .+... .+.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~----~~l~~~as~~~~--g----~~~~~~~~------------~~~~~~~~~~- 57 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPI----DKLVLLASDRSA--G----RKVTFKGK------------ELEVNEAKIE- 57 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCCh----hhEEEEeccccC--C----CeeeeCCe------------eEEEEeCChH-
Confidence 689999 6999999999999987211 234455555432 1 11211110 11121 1233
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
.+.++|+||+|++.....+....+.. .|..||+++.
T Consensus 58 ~~~~~D~v~~a~g~~~s~~~a~~~~~---~G~~VID~ss 93 (339)
T TIGR01296 58 SFEGIDIALFSAGGSVSKEFAPKAAK---CGAIVIDNTS 93 (339)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHH---CCCEEEECCH
Confidence 35789999999999887777766543 4678888874
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.029 Score=53.14 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|++.|. ..++++|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv------g~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV------GNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC------CEEEEEeCCc
Confidence 3589999999999999999999995 6899999874
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0096 Score=53.11 Aligned_cols=108 Identities=11% Similarity=0.060 Sum_probs=60.5
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC-CCccCC------
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP-GIKLGK------ 130 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~-~~~l~~------ 130 (419)
.....||.|+|+|..|..-+..|...| .+|+.++..++. .+.++..+....... ......
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lG-------a~v~~~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLG-------AEVVVPDERPER------LRQLESLGAYFIEVDYEDHLERKDFDKA 83 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT--------EEEEEESSHHH------HHHHHHTTTEESEETTTTTTTSB-CCHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCC-------CEEEeccCCHHH------HHhhhcccCceEEEcccccccccccchh
Confidence 344579999999999999999999999 899999987644 344444332111000 000000
Q ss_pred -----CeEecCCHHHHhcCCCEEEEccCcc--hHHHHH-HHHhccCCCCcEEEEee
Q 014757 131 -----NVVADPDLENAVKDANMLVFVTPHQ--FMEGIC-KRLVGKVNGDVEAISLI 178 (419)
Q Consensus 131 -----~i~~~~~~~ea~~~aDlVilavp~~--~~~~vl-~~l~~~l~~~tiivs~~ 178 (419)
.........+.+..+|+||.+.-.+ ....++ ++-...++++.+|++++
T Consensus 84 ~~~~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred hhhHHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 0001122345577899999866542 222222 33334467899999885
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.068 Score=52.93 Aligned_cols=81 Identities=22% Similarity=0.202 Sum_probs=52.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~~e 140 (419)
.+|+|+|+|.+|..-.+.....| .+|+.++|++++ .+..++.|.... +... .+..+
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-------a~Via~~~~~~K------~e~a~~lGAd~~----------i~~~~~~~~~ 224 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-------AEVIAITRSEEK------LELAKKLGADHV----------INSSDSDALE 224 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-------CeEEEEeCChHH------HHHHHHhCCcEE----------EEcCCchhhH
Confidence 58999999999977666665588 899999999876 344444443211 1111 11212
Q ss_pred Hhc-CCCEEEEccCcchHHHHHHHHh
Q 014757 141 AVK-DANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 141 a~~-~aDlVilavp~~~~~~vl~~l~ 165 (419)
.+. .+|+||.+++...+...++-+.
T Consensus 225 ~~~~~~d~ii~tv~~~~~~~~l~~l~ 250 (339)
T COG1064 225 AVKEIADAIIDTVGPATLEPSLKALR 250 (339)
T ss_pred HhHhhCcEEEECCChhhHHHHHHHHh
Confidence 222 3999999999666666665554
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.048 Score=53.10 Aligned_cols=99 Identities=11% Similarity=0.182 Sum_probs=57.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC-CCcchHHHHHHhcCcCCccCCCCccCCCeEecC----
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL-PSGEKLTDVINRTNENVKYLPGIKLGKNVVADP---- 136 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~-~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~---- 136 (419)
+++.|||+|..+.+++..|+..|. .+|++++|+++. ...+++++.+.... +..+...+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~------~~i~i~nRt~~~~~ka~~la~~~~~~~-----------~~~~~~~~~~~~ 187 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGL------KEIKLFNRRDEFFDKALAFAQRVNENT-----------DCVVTVTDLADQ 187 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC------CEEEEEeCCccHHHHHHHHHHHhhhcc-----------CceEEEechhhh
Confidence 589999999999999999999884 589999998641 01233333332210 00011111
Q ss_pred -CHHHHhcCCCEEEEccCcchH---HH-HHHHHhccCCCCcEEEEee
Q 014757 137 -DLENAVKDANMLVFVTPHQFM---EG-ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 -~~~ea~~~aDlVilavp~~~~---~~-vl~~l~~~l~~~tiivs~~ 178 (419)
.+++.+.++|+||-|+|.-.. .. .... ...++++.+++++.
T Consensus 188 ~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~v 233 (288)
T PRK12749 188 QAFAEALASADILTNGTKVGMKPLENESLVND-ISLLHPGLLVTECV 233 (288)
T ss_pred hhhhhhcccCCEEEECCCCCCCCCCCCCCCCc-HHHCCCCCEEEEec
Confidence 122345678999999986221 11 1100 12245677777765
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.03 Score=57.59 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=57.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCC---CCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLR---LSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~---~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.++||+|+|+|.||..++..|.++... .+..+.+ +.+++|+.++ .+.+. . .....+
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~------~~~~~-------------~-~~~~~~ 61 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK------DRGVD-------------L-PGILLT 61 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh------ccCCC-------------C-ccccee
Confidence 457999999999999999888654200 0000123 3466776543 11100 0 013456
Q ss_pred CCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 136 PDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 136 ~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
++.++.+. +.|+|+.+++.... ..+-+...+..|.-||+.-++.
T Consensus 62 ~d~~~ll~d~~iDvVve~tg~~~~--~~~~~~~aL~~GkhVVtaNK~~ 107 (426)
T PRK06349 62 TDPEELVNDPDIDIVVELMGGIEP--ARELILKALEAGKHVVTANKAL 107 (426)
T ss_pred CCHHHHhhCCCCCEEEECCCCchH--HHHHHHHHHHCCCeEEEcCHHH
Confidence 78877764 47999999876322 1222333445576777655543
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.11 Score=48.10 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=51.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+|.|||.|.+|..-+..|.+.| .+|++++.+... + .+.+.+.+ .+.. +.-.-+..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g-------a~VtVvsp~~~~----~-l~~l~~~~-~i~~---------~~~~~~~~ 65 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG-------AQLRVIAEELES----E-LTLLAEQG-GITW---------LARCFDAD 65 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC-------CEEEEEcCCCCH----H-HHHHHHcC-CEEE---------EeCCCCHH
Confidence 3468999999999999999999999 899999876432 1 23443332 1110 00011223
Q ss_pred HHhcCCCEEEEccCcchHHH
Q 014757 140 NAVKDANMLVFVTPHQFMEG 159 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~ 159 (419)
.+.++|+||.|+....+..
T Consensus 66 -dl~~~~lVi~at~d~~ln~ 84 (205)
T TIGR01470 66 -ILEGAFLVIAATDDEELNR 84 (205)
T ss_pred -HhCCcEEEEECCCCHHHHH
Confidence 3678999999998864444
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.075 Score=53.64 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=56.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc--------------chHHHHHHhcCcCCccCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG--------------EKLTDVINRTNENVKYLP 124 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~--------------~~l~~~i~~~g~~~~~~~ 124 (419)
.+|.|||+|.+|+.++..|+..|. .+++++|.+.-. +.+ +.+.+.+++. .|
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gv------g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~------np 109 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGV------GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI------QP 109 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC------CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH------CC
Confidence 589999999999999999999995 689999987311 000 1111222221 12
Q ss_pred CCccC-CCeEec-CCHHHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014757 125 GIKLG-KNVVAD-PDLENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 125 ~~~l~-~~i~~~-~~~~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+..+. ..-+.+ .+..+.+.++|+||-|+-....+..+.++..
T Consensus 110 ~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~ 153 (370)
T PRK05600 110 DIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE 153 (370)
T ss_pred CCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 22110 001111 2334557788998888888777776666543
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.052 Score=54.51 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=56.3
Q ss_pred cCeEEEECc-chHHHHHHHH-HHHcCCCCCCCCce---EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 61 KSKVTVVGS-GNWGSVASKL-IASNTLRLSSFHDE---VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~-La~~G~~~~~~~~~---V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
|++|+|||+ |.+|.-+... |.+.. .+ +.++..... +.....+.+... .+...
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~-------f~~~~l~~~ss~~s--------------g~~~~~f~g~~~--~v~~~ 57 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEND-------FDLIEPVFFSTSQA--------------GGAAPSFGGKEG--TLQDA 57 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCC-------CCcCcEEEecchhh--------------CCcccccCCCcc--eEEec
Confidence 579999996 9999999984 44444 34 555443211 111111111111 12222
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCC--cEEEEeecCc
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGD--VEAISLIKGM 181 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~--tiivs~~nGi 181 (419)
.+.++ ..++|++|+|+|+...+++...+.. .| .+||+++.-.
T Consensus 58 ~~~~~-~~~~Divf~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~f 101 (369)
T PRK06598 58 FDIDA-LKKLDIIITCQGGDYTNEVYPKLRA---AGWQGYWIDAASTL 101 (369)
T ss_pred CChhH-hcCCCEEEECCCHHHHHHHHHHHHh---CCCCeEEEECChHH
Confidence 33433 5789999999999877777766644 46 5688887533
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.085 Score=51.67 Aligned_cols=79 Identities=11% Similarity=0.170 Sum_probs=54.4
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.||+|+| .|..|.-+.+.|++.. ++.+.....+. . + ...+.++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP--------~~el~~l~s~~-------~-~--------------------~~~~~~~ 45 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD--------DIELLSIAPDR-------R-K--------------------DAAERAK 45 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC--------CeEEEEEeccc-------c-c--------------------CcCCHhH
Confidence 4899999 5999999999998875 44444333221 0 0 0112334
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
...++|++|+|+|.....++...+. ..+..||+++.
T Consensus 46 ~~~~~D~vFlalp~~~s~~~~~~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 46 LLNAADVAILCLPDDAAREAVSLVD---NPNTCIIDAST 81 (310)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHH---hCCCEEEECCh
Confidence 4578999999999987777766654 35788999875
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.063 Score=56.23 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=62.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccC-C-CCc-cCCC-eEe-c
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYL-P-GIK-LGKN-VVA-D 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~-~-~~~-l~~~-i~~-~ 135 (419)
..||.|+|+|.+|...+..+...| .+|+++|+++++ .+..++.|...... . +.. .... ++. +
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG-------A~V~a~D~~~~r------le~aeslGA~~v~i~~~e~~~~~~gya~~~s 231 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG-------AIVRAFDTRPEV------AEQVESMGAEFLELDFEEEGGSGDGYAKVMS 231 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcCCeEEEeccccccccccchhhhcc
Confidence 458999999999999999888889 789999998766 45555555331000 0 000 0000 011 1
Q ss_pred CCH--------HHHhcCCCEEEEccCcch---HHHHHHHHhccCCCCcEEEEee
Q 014757 136 PDL--------ENAVKDANMLVFVTPHQF---MEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 136 ~~~--------~ea~~~aDlVilavp~~~---~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.+. .+..+++|+||.|+-... -..+.++....++++..|+++.
T Consensus 232 ~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 232 EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 111 112357999999996422 1111244445566788887764
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.019 Score=58.37 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=31.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
|.+|.|||+|.+|.+.|..|+++| ++|++++++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g-------~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRG-------YQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CeEEEEeCCC
Confidence 459999999999999999999999 8999999875
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.019 Score=46.85 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=51.0
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+....+|.|||.|.+|..=+..|.+.| .+|++++.+. +..++ ... . ....
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-------A~v~vis~~~---------~~~~~-~i~------------~-~~~~ 53 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-------AKVTVISPEI---------EFSEG-LIQ------------L-IRRE 53 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-------BEEEEEESSE---------HHHHT-SCE------------E-EESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEECCch---------hhhhh-HHH------------H-Hhhh
Confidence 445678999999999999999999999 8999999763 11121 110 0 0112
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
.++.+.++|+||.|+.+..+.+.+.....
T Consensus 54 ~~~~l~~~~lV~~at~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 54 FEEDLDGADLVFAATDDPELNEAIYADAR 82 (103)
T ss_dssp -GGGCTTESEEEE-SS-HHHHHHHHHHHH
T ss_pred HHHHHhhheEEEecCCCHHHHHHHHHHHh
Confidence 22347789999999998776665544443
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.053 Score=53.75 Aligned_cols=39 Identities=5% Similarity=0.096 Sum_probs=33.9
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.....||.|||+|-||...+..|.++|. .+|++.+|+.+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~------~~i~v~nRt~~ 209 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGY------SRITFCSRQQL 209 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCC------CEEEEEcCCcc
Confidence 4556799999999999999999999984 57999999864
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.081 Score=53.12 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=57.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc--------------chHHHHHHhcCcCCccC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG--------------EKLTDVINRTNENVKYL 123 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~--------------~~l~~~i~~~g~~~~~~ 123 (419)
..||.|||+|.+|+.++..|+..|. ..++++|.+.-. +.+ +.+.+.+++. .
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~------n 95 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV------GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL------N 95 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH------C
Confidence 3589999999999999999999995 689999987411 000 1112222221 1
Q ss_pred CCCccCC-CeEec-CCHHHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014757 124 PGIKLGK-NVVAD-PDLENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 124 ~~~~l~~-~i~~~-~~~~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
|+..+.. ..+.+ .+..+.+.++|+||.|+-+...+.++.+...
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~ 140 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAA 140 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 2222100 00111 1223457889999999988776666665543
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.065 Score=50.92 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=31.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||+|||+|.+|+.++..|+..|. ..++++|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gv------g~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGV------GTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------CEEEEEcCCE
Confidence 4689999999999999999999995 6899998764
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.047 Score=49.06 Aligned_cols=83 Identities=23% Similarity=0.366 Sum_probs=54.6
Q ss_pred CCCcCeEEEECcchHHHHHHHH-HH-HcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe
Q 014757 58 VLHKSKVTVVGSGNWGSVASKL-IA-SNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~-La-~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
...+.++.|||+|++|.+++.. +. ++| .+ |-++|.+++. + |... +++ .++-
T Consensus 81 ~~~~tnviiVG~GnlG~All~Y~f~~~~~-------~~iv~~FDv~~~~---------V---G~~~---~~v----~V~~ 134 (211)
T COG2344 81 QDKTTNVIIVGVGNLGRALLNYNFSKKNG-------MKIVAAFDVDPDK---------V---GTKI---GDV----PVYD 134 (211)
T ss_pred CCcceeEEEEccChHHHHHhcCcchhhcC-------ceEEEEecCCHHH---------h---Cccc---CCe----eeec
Confidence 4456689999999999999876 34 455 44 4578877643 2 1111 111 1233
Q ss_pred cCCHHHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014757 135 DPDLENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 135 ~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
.++++..++ +.|+.|+|||+..-.++.+.|..
T Consensus 135 ~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~Lv~ 168 (211)
T COG2344 135 LDDLEKFVKKNDVEIAILTVPAEHAQEVADRLVK 168 (211)
T ss_pred hHHHHHHHHhcCccEEEEEccHHHHHHHHHHHHH
Confidence 455555555 78999999999887777777654
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.059 Score=54.51 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=30.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.||.|+|+|.+|+.++..|+..|. .+++++|++
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gv------g~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGV------GTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC------CeEEEEeCC
Confidence 589999999999999999999994 589999987
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.023 Score=52.78 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=49.2
Q ss_pred cCeEEEECcchHHHHHHHHHH--HcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIA--SNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La--~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..+|+|||+|.+|..++..+. ..| +++ -++++++++ .... ..+. .+....+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g-------~~ivgv~D~d~~~---------~~~~------i~g~----~v~~~~~ 137 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRG-------FKIVAAFDVDPEK---------IGTK------IGGI----PVYHIDE 137 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCC-------cEEEEEEECChhh---------cCCE------eCCe----EEcCHHH
Confidence 468999999999999988643 334 554 467776543 1110 0010 0112244
Q ss_pred HHHHhc--CCCEEEEccCcchHHHHHHHHh
Q 014757 138 LENAVK--DANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 138 ~~ea~~--~aDlVilavp~~~~~~vl~~l~ 165 (419)
+++.++ +.|.|++|+|.....++.+.+.
T Consensus 138 l~~li~~~~iD~ViIa~P~~~~~~i~~~l~ 167 (213)
T PRK05472 138 LEEVVKENDIEIGILTVPAEAAQEVADRLV 167 (213)
T ss_pred HHHHHHHCCCCEEEEeCCchhHHHHHHHHH
Confidence 555544 4999999999988777766554
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.035 Score=53.76 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 56 DGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.+.-..-||+|||.|.+|+--|+...--| -+|++.+++.++ ...+... + +.++.-.....
T Consensus 163 vpGV~~~kv~iiGGGvvgtnaAkiA~glg-------A~Vtild~n~~r------l~~ldd~------f-~~rv~~~~st~ 222 (371)
T COG0686 163 VPGVLPAKVVVLGGGVVGTNAAKIAIGLG-------ADVTILDLNIDR------LRQLDDL------F-GGRVHTLYSTP 222 (371)
T ss_pred CCCCCCccEEEECCccccchHHHHHhccC-------CeeEEEecCHHH------HhhhhHh------h-CceeEEEEcCH
Confidence 34445568999999999999888888777 899999998654 2222221 0 00100000112
Q ss_pred CCHHHHhcCCCEEEEccCc---chHHHHHHHHhccCCCCcEEEEee
Q 014757 136 PDLENAVKDANMLVFVTPH---QFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~---~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.+.++++..+|+||=+|=- ..=.-+.++..+.++++++||++.
T Consensus 223 ~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 223 SNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred HHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 3456778899999877632 333334456566678899999874
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.053 Score=54.15 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=48.2
Q ss_pred cCeEEEECcchHHHH-HHHHHHHc--CCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGSGNWGSV-ASKLIASN--TLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~-lA~~La~~--G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|.||||||+|.++.- .+..+... + .+| .+++++++. .+...+.+ .++.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~-------~~l~av~d~~~~~------~~~~~~~~-------------~~~~~~ 54 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDS-------WHVAHIFRRHAKP------EEQAPIYS-------------HIHFTS 54 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCC-------EEEEEEEcCChhH------HHHHHhcC-------------CCcccC
Confidence 469999999997753 34434332 3 555 467776543 21111111 124567
Q ss_pred CHHHHhc--CCCEEEEccCcchHHHHHHHHh
Q 014757 137 DLENAVK--DANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 137 ~~~ea~~--~aDlVilavp~~~~~~vl~~l~ 165 (419)
|.++.+. +.|+|++|+|.....++.....
T Consensus 55 ~~~ell~~~~iD~V~I~tp~~~H~~~~~~al 85 (344)
T PRK10206 55 DLDEVLNDPDVKLVVVCTHADSHFEYAKRAL 85 (344)
T ss_pred CHHHHhcCCCCCEEEEeCCchHHHHHHHHHH
Confidence 8888775 5799999999976666554443
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.095 Score=45.36 Aligned_cols=72 Identities=24% Similarity=0.261 Sum_probs=52.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.|+| ....|..++..|.+.| ..|++.+++. .+++
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~g-------atV~~~~~~t----------------------------------~~l~ 66 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDG-------ATVYSCDWKT----------------------------------IQLQ 66 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-------CEEEEeCCCC----------------------------------cCHH
Confidence 35788888 5788888888888887 7777776431 2345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.+++||+|+.++....+ ++ ..++++|+++++..
T Consensus 67 ~~v~~ADIVvsAtg~~~~---i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 67 SKVHDADVVVVGSPKPEK---VP--TEWIKPGATVINCS 100 (140)
T ss_pred HHHhhCCEEEEecCCCCc---cC--HHHcCCCCEEEEcC
Confidence 668899999999997643 21 34678999998654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.038 Score=55.48 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=62.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCcc-------------hHHHHHHhcCcCCccCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSGE-------------KLTDVINRTNENVKYLPG 125 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~~-------------~l~~~i~~~g~~~~~~~~ 125 (419)
.||+|||+|..|+.++..|++.|. -+++++|.+.=. +.++ .-++.+++.-.. ..++
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GV------geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~--in~~ 248 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPV------REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSN--MRRG 248 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCC------CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHH--hCCe
Confidence 589999999999999999999995 689999876311 0000 001111110000 0011
Q ss_pred Cc-cCCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 126 IK-LGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 126 ~~-l~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+. .+. .++.+..+.+.++|+||.|+-....+.++.+.... .+..+|++-.|+.
T Consensus 249 I~~~~~--~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~ 302 (393)
T PRK06153 249 IVPHPE--YIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLE 302 (393)
T ss_pred EEEEee--cCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeecce
Confidence 11 111 11212223467899999999987777777655432 2556777655544
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.031 Score=56.47 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=34.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.|..++|.|||+|..|.++|..|+++| ++|+++.+.+.
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 40 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAG-------WDVDVFERSPT 40 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCC-------CCEEEEecCCC
Confidence 355679999999999999999999999 89999998764
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.028 Score=52.42 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=50.6
Q ss_pred EEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014757 64 VTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 64 I~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
|+|+|+ |.+|..++..|.+.+ ++|++..|++.. +..+.++..|.... .....-..++.+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~-------~~V~~l~R~~~~----~~~~~l~~~g~~vv-------~~d~~~~~~l~~al 62 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG-------FSVRALVRDPSS----DRAQQLQALGAEVV-------EADYDDPESLVAAL 62 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-------GCEEEEESSSHH----HHHHHHHHTTTEEE-------ES-TT-HHHHHHHH
T ss_pred CEEECCccHHHHHHHHHHHhCC-------CCcEEEEeccch----hhhhhhhcccceEe-------ecccCCHHHHHHHH
Confidence 789996 999999999999988 999999998732 22455665543211 00000112345578
Q ss_pred cCCCEEEEccCc
Q 014757 143 KDANMLVFVTPH 154 (419)
Q Consensus 143 ~~aDlVilavp~ 154 (419)
+++|.||++++.
T Consensus 63 ~g~d~v~~~~~~ 74 (233)
T PF05368_consen 63 KGVDAVFSVTPP 74 (233)
T ss_dssp TTCSEEEEESSC
T ss_pred cCCceEEeecCc
Confidence 899999999993
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.046 Score=54.34 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=57.8
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
...++|.|+|+ |.||+.+++.|++. |. .++++++|++++ .+.+...... ... .
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv------~~lilv~R~~~r------l~~La~el~~------------~~i-~ 207 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGV------AELLLVARQQER------LQELQAELGG------------GKI-L 207 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCC------CEEEEEcCCHHH------HHHHHHHhcc------------ccH-H
Confidence 34478999998 89999999999854 42 589999998655 3444331100 011 2
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++++.++|+||.++.....- +++. ..++++.+++++.
T Consensus 208 ~l~~~l~~aDiVv~~ts~~~~~-~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 208 SLEEALPEADIVVWVASMPKGV-EIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred hHHHHHccCCEEEECCcCCcCC-cCCH--HHhCCCeEEEEec
Confidence 4556788899999888652210 0100 1224567777775
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.028 Score=55.70 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=57.4
Q ss_pred CeEEEECcchHHHHHHHHHHHc------CCCCCCCCce-EEEEecCCCCC-----CcchHHHHHHhcCcCCccCCCCccC
Q 014757 62 SKVTVVGSGNWGSVASKLIASN------TLRLSSFHDE-VRMWVFEETLP-----SGEKLTDVINRTNENVKYLPGIKLG 129 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~------G~~~~~~~~~-V~l~~r~~~~~-----~~~~l~~~i~~~g~~~~~~~~~~l~ 129 (419)
|||+|+|.|++|..++..|.+. |. ..+ |.+.+++.... +.+++.+...+ + ... . .+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~-----~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g-~l~---~--~~ 68 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNN-----GISVVSVSDSKLSYYNERGLDIGKIISYKEK-G-RLE---E--ID 68 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCC-----CeEEEEEEECCCcccCCcCCChHHHHHHHhc-C-ccc---c--CC
Confidence 5899999999999999999874 31 134 33455543221 11111111111 1 000 0 00
Q ss_pred CCeEecCCHHHHh-cCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 130 KNVVADPDLENAV-KDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 130 ~~i~~~~~~~ea~-~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.. ..+.++.+ .++|+||-|+++. .-......+.+.+..+.-||+..||..
T Consensus 69 --~~-~~~~~~ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgal 120 (326)
T PRK06392 69 --YE-KIKFDEIFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGL 120 (326)
T ss_pred --CC-cCCHHHHhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHH
Confidence 00 01344332 3689999999852 211234445556667888888887654
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.058 Score=52.40 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=49.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC--CH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP--DL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~--~~ 138 (419)
.+++.|+|+|-.|.+++..|++.|. .+|++++|+.++ ++.+++.++... +.. .+...+ +.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~------~~i~i~nR~~~k--a~~La~~~~~~~------~~~----~~~~~~~~~~ 188 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGV------QKLQVADLDTSR--AQALADVINNAV------GRE----AVVGVDARGI 188 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC------CEEEEEcCCHHH--HHHHHHHHhhcc------Ccc----eEEecCHhHH
Confidence 3689999999999999999999984 589999999876 333444333210 000 011111 11
Q ss_pred HHHhcCCCEEEEccCc
Q 014757 139 ENAVKDANMLVFVTPH 154 (419)
Q Consensus 139 ~ea~~~aDlVilavp~ 154 (419)
.+....+|+||=|+|.
T Consensus 189 ~~~~~~~divINaTp~ 204 (283)
T PRK14027 189 EDVIAAADGVVNATPM 204 (283)
T ss_pred HHHHhhcCEEEEcCCC
Confidence 2234578999999985
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.074 Score=51.44 Aligned_cols=72 Identities=18% Similarity=0.103 Sum_probs=54.4
Q ss_pred cCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.|||-|. +|.+++..|.+.| ..|++..+.. .+++
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~-------atVtv~hs~T----------------------------------~~l~ 197 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAG-------CTVTVCHRFT----------------------------------KNLR 197 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC-------CeEEEEECCC----------------------------------CCHH
Confidence 46899999888 9999999999988 7898886431 2345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.++....+ +. ..+++++++||++.
T Consensus 198 ~~~~~ADIvi~avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 198 HHVRNADLLVVAVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred HHHhhCCEEEEcCCCccc---cc--HHHcCCCcEEEEcc
Confidence 557889999999954332 11 15678899999874
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.033 Score=56.73 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=52.0
Q ss_pred CCcCeEEEECcchHHHHH--HHHHHHcCCCCCCCC-ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 59 LHKSKVTVVGSGNWGSVA--SKLIASNTLRLSSFH-DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~l--A~~La~~G~~~~~~~-~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
|.++||+|||+|+.+.+- ...|.+. ++++ .++.++|.++++ ++++..+.+.= ......+..+..+
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~----e~l~~~el~L~Did~~r---~~~i~~~~~~~-----v~~~g~~~kv~~t 68 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLART----EELPVRELALYDIDEER---LKIIAILAKKL-----VEEAGAPVKVEAT 68 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcC----ccCCcceEEEEeCCHHH---HHHHHHHHHHH-----HHhhCCCeEEEEe
Confidence 356799999999987653 2223222 3333 589999998765 22222222110 0001122346789
Q ss_pred CCHHHHhcCCCEEEEccCc
Q 014757 136 PDLENAVKDANMLVFVTPH 154 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~ 154 (419)
+|.++|+.+||+|+.+.-.
T Consensus 69 td~~eAl~gAdfVi~~~rv 87 (442)
T COG1486 69 TDRREALEGADFVITQIRV 87 (442)
T ss_pred cCHHHHhcCCCEEEEEEee
Confidence 9999999999999998765
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.052 Score=42.63 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEec
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVF 99 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r 99 (419)
...++++|+|+|.+|..++..|.+.+. .+|++|+|
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~------~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGG------KKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC------CEEEEEcC
Confidence 445789999999999999999999841 78999988
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.18 Score=48.95 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|||+|.+|+..+..|+.+|. ..++++|.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV------G~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI------GKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC------CeEEEEeCCC
Confidence 3589999999999999999999996 6899999874
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.12 Score=51.60 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=56.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHc--------CCCCCCCCceE-EEEecCCCCC-----CcchHHHHHHhcCcCCccCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASN--------TLRLSSFHDEV-RMWVFEETLP-----SGEKLTDVINRTNENVKYLPGI 126 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~--------G~~~~~~~~~V-~l~~r~~~~~-----~~~~l~~~i~~~g~~~~~~~~~ 126 (419)
.+||+|+|+|.||..++..|.+. |. +.+| .+++++.... +.+++ ....+.......+
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~-----~~~vvai~d~~~~~~~~~Gi~~~~~-~~~~~~~~~~~~~--- 72 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGL-----DLKVVAIADSSGSAIDPDGLDLELA-LKVKEETGKLADY--- 72 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC-----CEEEEEEEeCCCcccCcCCCCHHHH-HHHHhccCCcccC---
Confidence 36899999999999999999765 30 0343 3556543210 11111 1111111000000
Q ss_pred ccCCCeEecCCHHHHh--cCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecC
Q 014757 127 KLGKNVVADPDLENAV--KDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 127 ~l~~~i~~~~~~~ea~--~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+ ....+.+.++.+ .+.|+|+.|+|+.. .+...+.+...+..+.-||+..++
T Consensus 73 --~-~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~ 127 (341)
T PRK06270 73 --P-EGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKG 127 (341)
T ss_pred --c-cccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcH
Confidence 0 011234666665 36899999999743 222233334445557777766543
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.041 Score=47.01 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=30.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|++.|. .+++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv------~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV------GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT------SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC------CceeecCCcc
Confidence 3689999999999999999999994 5899999864
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.11 Score=46.12 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=58.7
Q ss_pred cccccchhhhhhhhcccCCCCCCcccccccCCCCCCCCCCCcCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEe
Q 014757 20 FPCFFHSLSLSSLFMAPAFEDNNSETLPSSFSSGSDDGVLHKSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWV 98 (419)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~ 98 (419)
.|| |......|++.-.++ ...++|.|||-+ .+|.+++..|.+.| ..|++..
T Consensus 16 ~Pc--Tp~aii~lL~~~~~~-------------------l~Gk~v~VvGrs~~VG~Pla~lL~~~~-------atVt~~h 67 (160)
T PF02882_consen 16 VPC--TPLAIIELLEYYGID-------------------LEGKKVVVVGRSNIVGKPLAMLLLNKG-------ATVTICH 67 (160)
T ss_dssp --H--HHHHHHHHHHHTT-S-------------------TTT-EEEEE-TTTTTHHHHHHHHHHTT--------EEEEE-
T ss_pred cCC--CHHHHHHHHHhcCCC-------------------CCCCEEEEECCcCCCChHHHHHHHhCC-------CeEEecc
Confidence 577 666666777654332 344689999976 69999999999998 7888875
Q ss_pred cCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 99 FEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 99 r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
... .++++.++.||+||.++....+ ++ ..+++++++||++.
T Consensus 68 ~~T----------------------------------~~l~~~~~~ADIVVsa~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 68 SKT----------------------------------KNLQEITRRADIVVSAVGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp TTS----------------------------------SSHHHHHTTSSEEEE-SSSTT----B---GGGS-TTEEEEE--
T ss_pred CCC----------------------------------CcccceeeeccEEeeeeccccc---cc--cccccCCcEEEecC
Confidence 432 2344557889999999987554 11 34678999999873
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.072 Score=57.77 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=32.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+||+|||+|..|.+.|..|++.| ++|+++++.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G-------~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG-------VQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC-------CcEEEEeCCCC
Confidence 3579999999999999999999999 89999998764
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.1 Score=54.26 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=32.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+||+|+|.|.-|.++|..|.+.| ++|+++|+++.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G-------~~V~~~D~~~~ 48 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG-------AKVTAFDKKSE 48 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC-------CEEEEECCCCC
Confidence 468999999999999999999999 99999998753
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.037 Score=56.29 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=31.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|+|||+|.+|.+.|..|+++| ++|++++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g-------~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG-------HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-------CEEEEEeCCCc
Confidence 68999999999999999999999 89999999753
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.042 Score=55.52 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=32.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.++|.|||+|..|.++|..|++.| ++|++++|.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g-------~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQG-------IKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCC-------CcEEEEeeCcc
Confidence 468999999999999999999999 89999999865
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.058 Score=51.00 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 57 GVLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 57 ~~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+..+|+|.|+|+ |.+|..++..|+++| ++|++..|+++.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g-------~~V~~~~R~~~~ 53 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKG-------FAVKAGVRDVDK 53 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCC-------CEEEEEecCHHH
Confidence 4566789999995 999999999999999 899999988643
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.14 Score=50.45 Aligned_cols=81 Identities=22% Similarity=0.248 Sum_probs=53.0
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..|+|.|-|+ |.+|+.+...|.++| |.|..-.|+++. ++-.+.+.+.......+ .-+...+.-..+.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-------Y~V~gtVR~~~~---~k~~~~L~~l~~a~~~l--~l~~aDL~d~~sf 72 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-------YTVRGTVRDPED---EKKTEHLRKLEGAKERL--KLFKADLLDEGSF 72 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-------CEEEEEEcCcch---hhhHHHHHhcccCcccc--eEEeccccccchH
Confidence 5689999995 999999999999999 999999999875 11122333321110000 0011223334566
Q ss_pred HHHhcCCCEEEEcc
Q 014757 139 ENAVKDANMLVFVT 152 (419)
Q Consensus 139 ~ea~~~aDlVilav 152 (419)
.+++.+||.||=+-
T Consensus 73 ~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 73 DKAIDGCDGVFHTA 86 (327)
T ss_pred HHHHhCCCEEEEeC
Confidence 77899999997544
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.11 Score=54.24 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=31.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..++|.|||+|..|..+|..|++.| ++|+++++++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G-------~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG-------ARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCc
Confidence 3468999999999999999999999 8999999664
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.11 Score=51.86 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=47.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcC-CCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNT-LRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G-~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..||+|||+ .||...+..+.+.. . .+ |-++++++++ ++++.+.- ++...++.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~------~eLvaV~d~~~er------A~~~A~~~-------------gi~~y~~~ 56 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPER------FELAGILAQGSER------SRALAHRL-------------GVPLYCEV 56 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCC------cEEEEEEcCCHHH------HHHHHHHh-------------CCCccCCH
Confidence 479999999 68999999888753 1 45 4567787765 45554421 12356788
Q ss_pred HHHhcCCCEEEEccCc
Q 014757 139 ENAVKDANMLVFVTPH 154 (419)
Q Consensus 139 ~ea~~~aDlVilavp~ 154 (419)
++.+.+.|++++++|+
T Consensus 57 eell~d~Di~~V~ipt 72 (343)
T TIGR01761 57 EELPDDIDIACVVVRS 72 (343)
T ss_pred HHHhcCCCEEEEEeCC
Confidence 8888878888888754
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.045 Score=55.20 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=33.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|++|.|||+|..|.++|..|+++| ++|+++++.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G-------~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG-------YSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCCC
Confidence 679999999999999999999999 899999987653
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.1 Score=54.39 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=52.3
Q ss_pred CcCeEEEECcchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCCCC---------Ccc---hHHHHHHhcCcCCccCCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEETLP---------SGE---KLTDVINRTNENVKYLPGI 126 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~~~---------~~~---~l~~~i~~~g~~~~~~~~~ 126 (419)
...||+|||+|.-|.+.|..|+ +.| ++|++|++.+..- +.. .+.+.+...-. .+++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g-------~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~----~~~v 106 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHER-------VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFL----SPNY 106 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC-------CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHh----hCCe
Confidence 3468999999999999999765 567 8999999987530 111 11111111000 0122
Q ss_pred ccCCCeEecC--CHHHHhcCCCEEEEccCcch
Q 014757 127 KLGKNVVADP--DLENAVKDANMLVFVTPHQF 156 (419)
Q Consensus 127 ~l~~~i~~~~--~~~ea~~~aDlVilavp~~~ 156 (419)
.+..++.+-. +.++.....|.||+++-...
T Consensus 107 ~f~gnv~VG~Dvt~eeL~~~YDAVIlAtGA~~ 138 (506)
T PTZ00188 107 RFFGNVHVGVDLKMEELRNHYNCVIFCCGASE 138 (506)
T ss_pred EEEeeeEecCccCHHHHHhcCCEEEEEcCCCC
Confidence 2222344433 35665668999999998753
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.092 Score=50.79 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=54.1
Q ss_pred cCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.|||-| .+|.++|..|.+.| ..|++.... +.+++
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~g-------AtVtv~hs~----------------------------------t~~l~ 195 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAG-------ASVSVCHIL----------------------------------TKDLS 195 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCC-------CEEEEEeCC----------------------------------cHHHH
Confidence 3689999998 99999999999998 788877421 11234
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.|+....+ +. ..++++|++||++.
T Consensus 196 ~~~~~ADIvV~AvG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 196 FYTQNADIVCVGVGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred HHHHhCCEEEEecCCCCc---CC--HHHcCCCcEEEEee
Confidence 457889999999986543 11 23567899999874
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.25 Score=47.48 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=31.1
Q ss_pred eEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+|.|+|+ |.+|..++..|.+.| ++|++..|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-------~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-------VPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-------CcEEEEeCCCcc
Confidence 5889996 999999999999999 899999999865
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.28 Score=47.82 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=62.0
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..||.|.|. |.+|..+...|.+.| ++ |+.+++..-. +++. ++++..+.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g-------~~~v~pVnp~~~~-------~~v~----------------G~~~y~sv 57 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYG-------TNIVGGVTPGKGG-------TTVL----------------GLPVFNTV 57 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCC-------CCEEEEECCCCCC-------CeEe----------------CeeccCCH
Confidence 468999995 999999999999888 55 3344443102 1111 24566777
Q ss_pred HHHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+|+-.. .|+.++++|...+.+++++.... .=..+|.++.|+.
T Consensus 58 ~dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~--gvk~avI~s~Gf~ 101 (291)
T PRK05678 58 AEAVEATGANASVIYVPPPFAADAILEAIDA--GIDLIVCITEGIP 101 (291)
T ss_pred HHHhhccCCCEEEEEcCHHHHHHHHHHHHHC--CCCEEEEECCCCC
Confidence 775554 79999999999999999887652 1234555666775
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.048 Score=54.60 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=32.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|.|||+|..|.++|..|+++| ++|+++.+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g-------~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG-------HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCc
Confidence 68999999999999999999999 89999998875
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.27 Score=48.41 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=59.4
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
++||||+| +|.+|..|...|.+.. |+.+ +.++...+.. +++ .+.-.+. ....+.. +.+.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-----f~~~~~~~~AS~rSa--G~~---~~~f~~~------~~~v~~~---~~~~ 61 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-----FPFEELVLLASARSA--GKK---YIEFGGK------SIGVPED---AADE 61 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-----CCcceEEEEeccccc--CCc---cccccCc------cccCccc---cccc
Confidence 57999998 5999999999999964 1233 5555544332 111 0111110 0111111 1222
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
. ...++|++|.|.+...-+++..++.. .|.+||+.+.-.
T Consensus 62 ~-~~~~~Divf~~ag~~~s~~~~p~~~~---~G~~VIdnsSa~ 100 (334)
T COG0136 62 F-VFSDVDIVFFAAGGSVSKEVEPKAAE---AGCVVIDNSSAF 100 (334)
T ss_pred c-ccccCCEEEEeCchHHHHHHHHHHHH---cCCEEEeCCccc
Confidence 2 25689999999998777777777664 478888876533
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.091 Score=56.06 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=30.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.||.|+|+|.+|+..|..|+..|+ .+++++|.+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GV------g~ItlVD~D 371 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGV------RHITFVDNG 371 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCC------CeEEEEcCC
Confidence 589999999999999999999996 678999875
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.13 Score=53.80 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=33.3
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
...++||.|+|+|..|.++|..|.+.| ++|+++|++..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G-------~~V~~~D~~~~ 49 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELG-------CDVVVADDNET 49 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCC-------CEEEEECCChH
Confidence 445678999999999999999999999 89999997653
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.36 Score=46.88 Aligned_cols=91 Identities=19% Similarity=0.244 Sum_probs=63.5
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..||.|.| .|.+|..+-..+...| .+ .++..++.+ . .+++. ++++..+.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g-------~~-~v~~V~p~~--~---~~~v~----------------G~~~y~sv~ 56 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYG-------TN-IVGGVTPGK--G---GTTVL----------------GLPVFDSVK 56 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCC-------CC-EEEEECCCC--C---cceec----------------CeeccCCHH
Confidence 35899999 6999999999999888 66 555555541 0 01111 245667777
Q ss_pred HHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
|+... .|++++++|...+.+++++.... .=..+|.++.|+.
T Consensus 57 dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~--Gvk~avIis~Gf~ 99 (286)
T TIGR01019 57 EAVEETGANASVIFVPAPFAADAIFEAIDA--GIELIVCITEGIP 99 (286)
T ss_pred HHhhccCCCEEEEecCHHHHHHHHHHHHHC--CCCEEEEECCCCC
Confidence 75444 69999999999999999887652 1134555667774
|
ATP citrate lyases appear to form an outgroup. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.06 Score=53.91 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=32.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+++|.|||+|.-|.++|..|++.| ++|+++.+.++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g-------~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAG-------IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCC-------CCEEEEecCCC
Confidence 3578999999999999999999999 89999998764
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.31 Score=40.39 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=53.5
Q ss_pred CcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhc--C
Q 014757 68 GSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVK--D 144 (419)
Q Consensus 68 GaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~--~ 144 (419)
|.|.||..++..|.+.... .+.+| .+++|+ ...+.. ...... +...++++++.+. +
T Consensus 1 G~G~VG~~l~~~l~~~~~~---~~~~v~~v~~~~-~~~~~~-~~~~~~----------------~~~~~~~~~~~~~~~~ 59 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER---IDLEVVGVADRS-MLISKD-WAASFP----------------DEAFTTDLEELIDDPD 59 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH---CEEEEEEEEESS-EEEETT-HHHHHT----------------HSCEESSHHHHHTHTT
T ss_pred CCCHHHHHHHHHHHhCccc---CCEEEEEEEECC-chhhhh-hhhhcc----------------cccccCCHHHHhcCcC
Confidence 8999999999999887300 00454 456666 211111 011111 1235678887777 8
Q ss_pred CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 145 ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 145 aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.|+||-|+.+..+.+.+... +..|.-||+..+|..
T Consensus 60 ~dvvVE~t~~~~~~~~~~~~---L~~G~~VVt~nk~al 94 (117)
T PF03447_consen 60 IDVVVECTSSEAVAEYYEKA---LERGKHVVTANKGAL 94 (117)
T ss_dssp -SEEEE-SSCHHHHHHHHHH---HHTTCEEEES-HHHH
T ss_pred CCEEEECCCchHHHHHHHHH---HHCCCeEEEECHHHh
Confidence 99999998887777665544 446788888887654
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.14 Score=46.55 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=58.2
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.++|..|.+.| ..|++.+.+.-. .... +...++. +.+. -....++.
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~-------AtVti~~~~~~~--------~~~~-~~~~~hs---~t~~-~~~~~~l~ 121 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDG-------ARVYSVDINGIQ--------VFTR-GESIRHE---KHHV-TDEEAMTL 121 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC-------CEEEEEecCccc--------cccc-ccccccc---cccc-cchhhHHH
Confidence 46899999 6789999999999998 899988754321 0010 0000000 0000 00011255
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.+++...+. +. ..++++|++||++.
T Consensus 122 ~~~~~ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVG 156 (197)
T cd01079 122 DCLSQSDVVITGVPSPNYK--VP--TELLKDGAICINFA 156 (197)
T ss_pred HHhhhCCEEEEccCCCCCc--cC--HHHcCCCcEEEEcC
Confidence 6788999999999975541 10 24567899999863
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.17 Score=53.09 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=46.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.++|.|+|+|..|.+.+..|.+.| .+|+++|+++.. .+.+++.|.. +.......+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G-------~~v~~~D~~~~~------~~~l~~~g~~------------~~~~~~~~~ 66 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFG-------ARPTVCDDDPDA------LRPHAERGVA------------TVSTSDAVQ 66 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC-------CEEEEEcCCHHH------HHHHHhCCCE------------EEcCcchHh
Confidence 358999999999999999999999 899999966432 2334443321 111112223
Q ss_pred HhcCCCEEEEccC
Q 014757 141 AVKDANMLVFVTP 153 (419)
Q Consensus 141 a~~~aDlVilavp 153 (419)
.+.++|+||.+.-
T Consensus 67 ~l~~~D~VV~SpG 79 (488)
T PRK03369 67 QIADYALVVTSPG 79 (488)
T ss_pred HhhcCCEEEECCC
Confidence 4667899888764
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.065 Score=54.19 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=32.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..+.+|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G-------~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAG-------LSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC-------CEEEEEeCCC
Confidence 44568999999999999999999999 8999999865
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.13 Score=55.83 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=32.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+||+|||+|..|.+.|..|++.| ++|+++++.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G-------~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNG-------VAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CeEEEEecCCC
Confidence 3469999999999999999999999 89999998654
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.092 Score=39.38 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.6
Q ss_pred EECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 66 VVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 66 IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|||+|.-|.+.|..|+++| ++|+++++.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCC-------CcEEEEecCccc
Confidence 8999999999999999999 899999987653
|
... |
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.18 Score=49.45 Aligned_cols=141 Identities=16% Similarity=0.064 Sum_probs=85.2
Q ss_pred ccchhcccccccchhhhhhhhcccCCCCCCcc-cccccCCCCCCCCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCC
Q 014757 13 QPFIRKRFPCFFHSLSLSSLFMAPAFEDNNSE-TLPSSFSSGSDDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFH 91 (419)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~ 91 (419)
-|+-..|--|-++-+++.||-...+=- .++ ..---++....-|.-.-++++|+|.|.+|+-.|.++..-|
T Consensus 99 ~P~~Ns~saAEltigli~SLaR~i~~A--~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~g------- 169 (406)
T KOG0068|consen 99 TPTANSRSAAELTIGLILSLARQIGQA--SASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMG------- 169 (406)
T ss_pred CCCCChHHHHHHHHHHHHHHhhhcchh--heeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHhcC-------
Confidence 455555556667777777664322110 011 0000111112223444578999999999999999998888
Q ss_pred ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCCCEEEEccCc-chHHHHH-HHHhccCC
Q 014757 92 DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVN 169 (419)
Q Consensus 92 ~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~ 169 (419)
-.|..++.=.. .+.....| ++. .+.+|++..||+|-+=+|- .+.+.++ ++....++
T Consensus 170 m~vI~~dpi~~-------~~~~~a~g--------------vq~-vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mK 227 (406)
T KOG0068|consen 170 MHVIGYDPITP-------MALAEAFG--------------VQL-VSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMK 227 (406)
T ss_pred ceEEeecCCCc-------hHHHHhcc--------------cee-eeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhh
Confidence 55555553221 13333333 233 3567889999999999985 6677666 23344568
Q ss_pred CCcEEEEeecCcccC
Q 014757 170 GDVEAISLIKGMEVK 184 (419)
Q Consensus 170 ~~tiivs~~nGi~~~ 184 (419)
+|..||..+.|-..+
T Consensus 228 kGVriIN~aRGGvVD 242 (406)
T KOG0068|consen 228 KGVRIINVARGGVVD 242 (406)
T ss_pred CCcEEEEecCCceec
Confidence 899999998776553
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.21 Score=51.51 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=31.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.++|.|+|.|.+|.+.|..|++.| ++|++++++..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G-------~~V~~~d~~~~ 39 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG-------ANVTVNDGKPF 39 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC-------CEEEEEcCCCc
Confidence 368999999999999999999999 89999997653
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.11 Score=50.28 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=55.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
.++.|+|+|..+.+++..|++.|. .+|++++|++++ .+.+.+.- . .....+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~------~~i~i~nR~~~~------a~~la~~~-~------------~~~~~~~~-- 175 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF------TDGTIVARNEKT------GKALAELY-G------------YEWRPDLG-- 175 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC------CEEEEEeCCHHH------HHHHHHHh-C------------Ccchhhcc--
Confidence 489999999999999999999983 479999999876 44444311 0 00111111
Q ss_pred hcCCCEEEEccCcchH--HHH-HHHH-hccCCCCcEEEEee
Q 014757 142 VKDANMLVFVTPHQFM--EGI-CKRL-VGKVNGDVEAISLI 178 (419)
Q Consensus 142 ~~~aDlVilavp~~~~--~~v-l~~l-~~~l~~~tiivs~~ 178 (419)
...+|+||=|+|.-.. .+. ...+ ...++++.+++++.
T Consensus 176 ~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~v 216 (272)
T PRK12550 176 GIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVV 216 (272)
T ss_pred cccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEee
Confidence 2458999999985211 000 0001 12355667777764
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.24 Score=48.82 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=60.0
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+...-|+||+|+|.|+.-+++.|...- +=+|.|. +.+|+.++ +.+..+++ .+| +.++..
T Consensus 3 ~s~~ir~Gi~g~g~ia~~f~~al~~~p----~s~~~Ivava~~s~~~------A~~fAq~~---------~~~-~~k~y~ 62 (351)
T KOG2741|consen 3 DSATIRWGIVGAGRIARDFVRALHTLP----ESNHQIVAVADPSLER------AKEFAQRH---------NIP-NPKAYG 62 (351)
T ss_pred CCceeEEEEeehhHHHHHHHHHhccCc----ccCcEEEEEecccHHH------HHHHHHhc---------CCC-CCcccc
Confidence 445569999999999999999886542 1126665 55665544 44444432 122 346778
Q ss_pred CHHHHhcC--CCEEEEccCcchHHHHHHHHhc
Q 014757 137 DLENAVKD--ANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 137 ~~~ea~~~--aDlVilavp~~~~~~vl~~l~~ 166 (419)
+.++.+++ +|+|.+++|..+-.+++..++.
T Consensus 63 syEeLakd~~vDvVyi~~~~~qH~evv~l~l~ 94 (351)
T KOG2741|consen 63 SYEELAKDPEVDVVYISTPNPQHYEVVMLALN 94 (351)
T ss_pred CHHHHhcCCCcCEEEeCCCCccHHHHHHHHHH
Confidence 88887765 5999999998777777655444
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.16 Score=51.79 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=56.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc--------------chHHHHHHhcCcCCccC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG--------------EKLTDVINRTNENVKYL 123 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~--------------~~l~~~i~~~g~~~~~~ 123 (419)
..||.|||+|.+|+.++..|+.+|. ..++++|.+.-. +.+ +.+.+.+++. .
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gv------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~------n 109 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGV------GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI------N 109 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC------CeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh------C
Confidence 3589999999999999999999995 578999876411 000 0111112211 1
Q ss_pred CCCcc---CCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014757 124 PGIKL---GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 124 ~~~~l---~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
|...+ +..+. ..+..+.+.++|+||-|+-+...+..+.++..
T Consensus 110 p~v~i~~~~~~i~-~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~ 154 (392)
T PRK07878 110 PLVNVRLHEFRLD-PSNAVELFSQYDLILDGTDNFATRYLVNDAAV 154 (392)
T ss_pred CCcEEEEEeccCC-hhHHHHHHhcCCEEEECCCCHHHHHHHHHHHH
Confidence 12211 11111 11233457889999999887777766766543
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.15 Score=53.14 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=31.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
...+|+|||+|..|...|..|++.| ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G-------~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG-------VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-------CeEEEEecCC
Confidence 3468999999999999999999999 8999999875
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.16 Score=51.70 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=57.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc--------------chHHHHHHhcCcCCccC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG--------------EKLTDVINRTNENVKYL 123 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~--------------~~l~~~i~~~g~~~~~~ 123 (419)
..||.|||+|.+|+.++..|+.+|. ..++++|.+.-. +.+ +.+.+.+++. .
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv------g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~------n 105 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI------GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEI------N 105 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC------CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHH------C
Confidence 3589999999999999999999995 678999876311 001 1111222211 1
Q ss_pred CCCccC-CCeEec-CCHHHHhcCCCEEEEccCcchHHHHHHHHh
Q 014757 124 PGIKLG-KNVVAD-PDLENAVKDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 124 ~~~~l~-~~i~~~-~~~~ea~~~aDlVilavp~~~~~~vl~~l~ 165 (419)
|+.++. .....+ .+..+.+.++|+||.|+-+...+..+.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 222110 000111 123345788999999998877777776654
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.18 Score=52.36 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=32.9
Q ss_pred CCCcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 58 VLHKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+.+.++|.|+|.|..|.+ +|+.|.+.| ++|+++|.+..
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G-------~~V~~~D~~~~ 42 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLG-------YKVSGSDLKES 42 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCC-------CeEEEECCCCC
Confidence 344578999999999999 799999999 99999997653
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.084 Score=51.73 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=30.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+|.|||+|.-|.++|..|+++| ++|+++++.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G-------~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG-------IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT-------CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcc-------cccccchhcccc
Confidence 47999999999999999999999 999999998654
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.25 Score=48.62 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=30.0
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
||.|||+|.+|+.++..|+..|. ..++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv------g~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF------GEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC------CeEEEEcCCC
Confidence 68999999999999999999995 6899999764
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.2 Score=46.71 Aligned_cols=37 Identities=24% Similarity=0.134 Sum_probs=30.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
+..++|+|.|.|++|..+|..|.+.|. ..|.+.|.+.
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~------~vV~vsD~~g 57 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGG------KVLAVSDPDG 57 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC------EEEEEEcCCC
Confidence 445799999999999999999999982 3566777654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.12 Score=52.48 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=33.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
....++|.|||+|.-|.++|..|++.| ++|+++++.+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSG-------LRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCC-------CEEEEEecCCc
Confidence 444578999999999999999999999 99999998764
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.084 Score=53.32 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=31.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
++.+|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G-------~~v~l~E~~~ 36 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQG-------RSVAVIEGGE 36 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC-------CcEEEEcCCC
Confidence 3458999999999999999999999 9999999764
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.078 Score=53.44 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=31.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHc---CCCCCCCCceEEEEecC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASN---TLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~---G~~~~~~~~~V~l~~r~ 100 (419)
|.+++|.|||+|..|.++|..|+++ | ++|+++++.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G-------~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGG-------LPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCC-------CEEEEEeCC
Confidence 4567899999999999999999998 9 899999994
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.085 Score=53.30 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=31.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|.|||+|..|.++|..|++.| ++|+++.+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG-------HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC-------CceEEEeCCCC
Confidence 58999999999999999999999 89999998764
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.084 Score=53.87 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=31.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|.|||+|..|.++|..|+++| ++|+++.+.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG-------IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-------CcEEEEEcCCc
Confidence 68999999999999999999999 89999998764
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.52 Score=45.80 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.+|..|+.+|. ..++++|.+.
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV------g~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV------KSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC------CeEEEEcCCc
Confidence 3589999999999999999999995 6899999764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.27 Score=51.67 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=31.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..++|.|+|.|..|.++|..|.+.| ++|+++|...
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G-------~~v~~~D~~~ 40 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHG-------ARLRVADTRE 40 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCC-------CEEEEEcCCC
Confidence 3468999999999999999999999 8999999754
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.31 Score=45.16 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=57.8
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+....++|.|||.|.+|..=+..|.+.| .+|+++..+.. +++ ..+.+.+.... +.-.-
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~g-------a~v~Vvs~~~~----~el-~~~~~~~~i~~----------~~~~~ 65 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAG-------ADVTVVSPEFE----PEL-KALIEEGKIKW----------IEREF 65 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcC-------CEEEEEcCCcc----HHH-HHHHHhcCcch----------hhccc
Confidence 3445579999999999999999999999 89999987652 122 23333221000 01112
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
++++ ..++++||.||.+..+.+.+.+.+.
T Consensus 66 ~~~~-~~~~~lviaAt~d~~ln~~i~~~a~ 94 (210)
T COG1648 66 DAED-LDDAFLVIAATDDEELNERIAKAAR 94 (210)
T ss_pred Chhh-hcCceEEEEeCCCHHHHHHHHHHHH
Confidence 3333 4569999999999877776655543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.11 Score=51.60 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=30.7
Q ss_pred cCeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~ 102 (419)
||||.|.|+ |.+|+.++..|.++ | ++|+.++|+.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-------~~V~~~~r~~~ 37 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-------WEVYGMDMQTD 37 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-------CeEEEEeCcHH
Confidence 589999996 99999999999886 6 89999998653
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.11 Score=52.21 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+.+++|+|||+|.+|.+.|..|++.| .+|+++++.+.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G-------~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERG-------ADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcC-------CEEEEEecCcc
Confidence 34678999999999999999999999 89999997653
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.097 Score=52.76 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+|.|||+|..|.++|..|+++| ++|+++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G-------~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAG-------ASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCC-------CeEEEEeCCCC
Confidence 47999999999999999999999 89999998754
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.2 Score=52.00 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=31.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+||.|||.|..|.+.|..|.+.| ++|+++|+.+.
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G-------~~v~~~D~~~~ 43 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGG-------AEVIAWDDNPA 43 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCC-------CEEEEECCChh
Confidence 3468999999999999999999999 89999997643
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.15 Score=51.56 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=31.6
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~ 103 (419)
..|||.|.| +|-+|+.++..|.++ | ++|.+++|+.+.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g-------~~V~~l~r~~~~ 51 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETP-------HKVLALDVYNDK 51 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCC-------CEEEEEecCchh
Confidence 347999999 599999999999997 6 899999987644
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.23 Score=48.15 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=53.3
Q ss_pred cCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-+++.|||-|. +|.++|..|.+.| ..|++.... |.+++
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~-------atVtv~hs~----------------------------------T~~l~ 202 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRN-------ATVSVCHVF----------------------------------TDDLK 202 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC-------CEEEEEecc----------------------------------CCCHH
Confidence 36899999888 9999999999988 788887632 12344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+..++||+||.++.-..+ + -..++++|++||++.
T Consensus 203 ~~~~~ADIvv~AvG~p~~---i--~~~~vk~gavVIDvG 236 (287)
T PRK14176 203 KYTLDADILVVATGVKHL---I--KADMVKEGAVIFDVG 236 (287)
T ss_pred HHHhhCCEEEEccCCccc---c--CHHHcCCCcEEEEec
Confidence 556789999997764322 1 123678899999873
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.17 Score=52.57 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+.|.|||+|.-|++.|..|+++| ++|.++++..+
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G-------~~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGG-------IETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCC
Confidence 58999999999999999999999 89999998753
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.1 Score=53.07 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=32.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+|.|||+|..|.++|..|++.| ++|+++++.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G-------~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSG-------LRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCC-------CEEEEEeCCCC
Confidence 357999999999999999999999 89999998765
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.19 Score=50.02 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=57.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHc--------CCCCCCCCceEE-EEecCCCC-----CCcchHHHHHHhcCcCCccCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASN--------TLRLSSFHDEVR-MWVFEETL-----PSGEKLTDVINRTNENVKYLPGI 126 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~--------G~~~~~~~~~V~-l~~r~~~~-----~~~~~l~~~i~~~g~~~~~~~~~ 126 (419)
+++|+|+|.|.+|+.++..|.++ |. +..|. +.+++... .+.+++.+..++.+ .+..++.
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~-----~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~-~~~~~~~- 74 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGV-----ELKVVSITDTSGTIWLPEDIDLREAKEVKENFG-KLSNWGN- 74 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC-----CEEEEEEEeCCccccCCCCCChHHHHHhhhccC-chhhccc-
Confidence 37999999999999999998873 41 02332 33443221 11112211111111 0000000
Q ss_pred ccCCCeEecCCHHHHh--cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 127 KLGKNVVADPDLENAV--KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 127 ~l~~~i~~~~~~~ea~--~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+... ...++++.+ .++|+||-++......+...+ .+..+.-||+..||.
T Consensus 75 --~~~~-~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~---al~~G~~VVtanK~~ 125 (336)
T PRK08374 75 --DYEV-YNFSPEEIVEEIDADIVVDVTNDKNAHEWHLE---ALKEGKSVVTSNKPP 125 (336)
T ss_pred --cccc-cCCCHHHHHhcCCCCEEEECCCcHHHHHHHHH---HHhhCCcEEECCHHH
Confidence 0000 012455555 479999999987655555444 345677888888764
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.1 Score=52.19 Aligned_cols=33 Identities=27% Similarity=0.144 Sum_probs=30.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..|.|||+|.+|.+.|..|++.| ++|++++++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g-------~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRG-------LRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCC-------CeEEEEeccc
Confidence 46999999999999999999999 8999999874
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.68 Score=43.27 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=56.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++|.|||.|.++..=+..|.+.| .+|+++..+-.. + +..+.+.+. +.. ++-.-++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~g-------A~VtVVap~i~~----e-l~~l~~~~~-------i~~---~~r~~~~~ 81 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKG-------CYVYILSKKFSK----E-FLDLKKYGN-------LKL---IKGNYDKE 81 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEcCCCCH----H-HHHHHhCCC-------EEE---EeCCCChH
Confidence 3468999999999999999999999 899999865421 1 223333221 110 00011233
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+ +.++++||.||.+..+...+...+.
T Consensus 82 d-l~g~~LViaATdD~~vN~~I~~~a~ 107 (223)
T PRK05562 82 F-IKDKHLIVIATDDEKLNNKIRKHCD 107 (223)
T ss_pred H-hCCCcEEEECCCCHHHHHHHHHHHH
Confidence 3 6789999999998877776655554
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.21 Score=48.39 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=53.6
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~~-------aTVtichs~----------------------------------T~~l~ 193 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLRED-------ATVTLAHSK----------------------------------TQDLP 193 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 6889999999999888 788876532 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..++||+||.++....+-. ..++++|++||++
T Consensus 194 ~~~~~ADIvIsAvGkp~~i~-----~~~vk~GavVIDV 226 (287)
T PRK14173 194 AVTRRADVLVVAVGRPHLIT-----PEMVRPGAVVVDV 226 (287)
T ss_pred HHHhhCCEEEEecCCcCccC-----HHHcCCCCEEEEc
Confidence 56788999999998654311 3457889999986
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.23 Score=48.01 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=53.5
Q ss_pred cCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.|||-+ .+|.++|..|.+.| ..|++.... |.+++
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~~-------AtVti~hs~----------------------------------T~~l~ 195 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNAN-------ATVDICHIF----------------------------------TKDLK 195 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CcCHH
Confidence 3689999977 99999999999988 788865321 12344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.++.-..+ +. ..++++|++||++.
T Consensus 196 ~~~~~ADIvV~AvGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 196 AHTKKADIVIVGVGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred HHHhhCCEEEEecCcccc---cC--HHHcCCCcEEEEee
Confidence 567899999999986443 11 34678899999873
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.22 Score=48.54 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=53.2
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc--------------chHHHHHHhcCcCCccCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG--------------EKLTDVINRTNENVKYLPG 125 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~--------------~~l~~~i~~~g~~~~~~~~ 125 (419)
||.|||+|.+|+.++..|+..|. .+++++|.+.-. +.+ +.+.+.+++. .|+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv------g~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~------np~ 68 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF------RNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDR------VPG 68 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC------CeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHH------CCC
Confidence 68999999999999999999995 678888875311 111 1111222221 122
Q ss_pred Ccc---CCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHH
Q 014757 126 IKL---GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKR 163 (419)
Q Consensus 126 ~~l---~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~ 163 (419)
..+ +..+ .+...+..++.|+||.++-+...+..+.+
T Consensus 69 v~I~~~~~~i--~~~~~~f~~~fdvVi~alDn~~aR~~in~ 107 (291)
T cd01488 69 VNVTPHFGKI--QDKDEEFYRQFNIIICGLDSIEARRWING 107 (291)
T ss_pred CEEEEEeccc--CchhHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 211 1111 12224567889999999987666555544
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.24 Score=47.93 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=54.2
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.++|..|.+.+ ..|++.... +.+++
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~~-------atVt~chs~----------------------------------t~~l~ 196 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNEN-------ATVTYCHSK----------------------------------TKNLA 196 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC-------CEEEEEeCC----------------------------------chhHH
Confidence 36899999 6889999999999988 788876421 12345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.++....+ +. ..++++|++||++.
T Consensus 197 ~~~~~ADIvI~AvG~p~~---i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 197 ELTKQADILIVAVGKPKL---IT--ADMVKEGAVVIDVG 230 (284)
T ss_pred HHHHhCCEEEEecCCCCc---CC--HHHcCCCCEEEEee
Confidence 567899999999986553 21 24568899999873
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.11 Score=52.92 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=31.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|||+|||+|.-|.++|..|+++|. .+|+++.|.++.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~------~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSH------LNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCC------CCEEEEecCCcC
Confidence 689999999999999999999981 399999998653
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.11 Score=50.65 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=31.6
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|||.|.|+ |.+|..++..|++.| ++|++++|+++.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g-------~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG-------EEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC-------CEEEEEEecCcc
Confidence 58999995 999999999999999 899999998654
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.11 Score=52.66 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=31.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
+++|.|||+|..|.++|..|+++| ++|+++.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G-------~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG-------LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC-------CcEEEEccC
Confidence 468999999999999999999999 999999997
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.13 Score=51.87 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=33.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+++|.|||+|..|.+.|..|+++| ++|+++.+.++.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G-------~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARG-------HSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcC-------CcEEEEeCCCcc
Confidence 4568999999999999999999999 899999987753
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.12 Score=52.24 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=44.9
Q ss_pred ccCCCCCCcccccccCCCCCCCCCCCcCeEEEE----C-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 35 APAFEDNNSETLPSSFSSGSDDGVLHKSKVTVV----G-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~II----G-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+.....+..|.+.++ ..........++||.|+ | +|.+|..++..|.++| |+|++++|++..
T Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-------~~V~~l~R~~~~ 92 (378)
T PLN00016 27 ALAARAQGSRRASQV-AGAAAAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-------HEVTLFTRGKEP 92 (378)
T ss_pred Hhhhccccccccccc-hhhhhhcccccceEEEEeccCCCceeEhHHHHHHHHHCC-------CEEEEEecCCcc
Confidence 344455555555553 33344455666899999 7 5999999999999999 999999998653
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.28 Score=47.45 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=53.2
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
++|.||| ...+|.++|..|.+.| ..|++.... |.++++
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~-------atVtichs~----------------------------------T~~l~~ 195 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHD-------ATVTIAHSK----------------------------------TRNLKQ 195 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCC-------CEEEEECCC----------------------------------CCCHHH
Confidence 6899999 5788999999999888 788876422 233555
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
..+.||+||.++.-..+ +. ..++++|++||++.
T Consensus 196 ~~~~ADIvI~AvG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 196 LTKEADILVVAVGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred HHhhCCEEEEccCCcCc---cC--HHHcCCCcEEEEee
Confidence 67889999999986543 11 24578899999873
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.28 Score=40.11 Aligned_cols=85 Identities=16% Similarity=0.071 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhcCCCEEEE
Q 014757 71 NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVF 150 (419)
Q Consensus 71 ~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~~aDlVil 150 (419)
+-+..++..|.+.| .+|.++|..-.. +.+...+. ..+++.+++++++++++|.||+
T Consensus 17 Sp~~~l~~~L~~~g-------~~V~~~DP~v~~-------~~~~~~~~----------~~~~~~~~~~~~~~~~~D~vvl 72 (106)
T PF03720_consen 17 SPALELIEELKERG-------AEVSVYDPYVDE-------EEIKELGK----------LEGVEVCDDLEEALKGADAVVL 72 (106)
T ss_dssp -HHHHHHHHHHHTT--------EEEEE-TTSHH-------HHHHHHCH----------HHCEEEESSHHHHHTTESEEEE
T ss_pred CHHHHHHHHHHHCC-------CEEEEECCccCh-------HHHHhhCC----------ccceEEecCHHHHhcCCCEEEE
Confidence 34567899999999 899999865322 22222110 0135667888888999999999
Q ss_pred ccCcchHHH-HHHHHhccCCCCcEEEEeec
Q 014757 151 VTPHQFMEG-ICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 151 avp~~~~~~-vl~~l~~~l~~~tiivs~~n 179 (419)
+++...... -.+.+...+..+.+|++.-+
T Consensus 73 ~t~h~~f~~l~~~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 73 ATDHDEFRELDWEEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp SS--GGGGCCGHHHHHHHSCSSEEEEESSS
T ss_pred EecCHHHhccCHHHHHHhcCCCCEEEECcc
Confidence 999866655 34566666666788888754
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.15 Score=50.03 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=29.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.|+|||+|..|.+.|..|++.| ++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G-------~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG-------HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT-------SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCC-------CeEEEEeec
Confidence 4899999999999999999999 999999998
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.57 Score=46.54 Aligned_cols=106 Identities=10% Similarity=0.120 Sum_probs=54.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC-----CC--ccC-CCeE
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP-----GI--KLG-KNVV 133 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~-----~~--~l~-~~i~ 133 (419)
+||+|.|.|.||..+.+.+.+... .++...+ ....+.+.++--++-.-.+.++.. +. .+. ..++
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~------~~ivain--d~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~ 74 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPE------LEFVQIN--DPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIR 74 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCC------cEEEEec--CCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEE
Confidence 799999999999999998776541 3443333 211112333333332211111111 11 111 2233
Q ss_pred ec--CCHHHH-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 134 AD--PDLENA-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 134 ~~--~~~~ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.. .++++. ..++|+||.|+.....++.... ++..|+..|.++
T Consensus 75 v~~~~~~~~~~w~gvDiVle~tG~~~s~~~a~~---hl~aGak~V~iS 119 (334)
T PRK08955 75 TTQNKAIADTDWSGCDVVIEASGVMKTKALLQA---YLDQGVKRVVVT 119 (334)
T ss_pred EEecCChhhCCccCCCEEEEccchhhcHHHHHH---HHHCCCEEEEEC
Confidence 32 245442 4589999999987655544432 333455555544
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.33 Score=47.31 Aligned_cols=35 Identities=29% Similarity=0.201 Sum_probs=31.5
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++|.|.| +|-+|+.++..|++.| ++|++++|+.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-------~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-------YTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-------CEEEEEEcCCCc
Confidence 6899999 5999999999999999 899999987653
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.34 Score=46.81 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=53.5
Q ss_pred cCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-.++.|||-+ ..|.++|..|.+.| ..|++..+.. .+++
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~-------atVtv~hs~t----------------------------------~~L~ 190 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNAD-------ATVTICHSKT----------------------------------ENLK 190 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCC-------CeeEEEecCh----------------------------------hHHH
Confidence 3689999987 99999999999888 7888876432 1244
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.+++||+||.+++-..+ +. ..++++|++||++.
T Consensus 191 ~~~~~ADIvI~Avgk~~l---v~--~~~vk~GavVIDVg 224 (279)
T PRK14178 191 AELRQADILVSAAGKAGF---IT--PDMVKPGATVIDVG 224 (279)
T ss_pred HHHhhCCEEEECCCcccc---cC--HHHcCCCcEEEEee
Confidence 557889999999974322 11 22358899999874
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.36 Score=48.28 Aligned_cols=35 Identities=26% Similarity=0.133 Sum_probs=29.8
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++.|+|+|.+|...+..+...|. .+|.+.|+++++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga------~~Viv~d~~~~R 205 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA------SVVIVVDRSPER 205 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC------ceEEEeCCCHHH
Confidence 79999999999998888877773 688888888765
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.14 Score=51.97 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=30.8
Q ss_pred CeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~ 101 (419)
..|.|||+|.+|.+.|..|++. | ++|+++++.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g-------~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPG-------ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCC-------CeEEEEeCCC
Confidence 5899999999999999999998 8 8999999875
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.77 Score=42.81 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=31.0
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..++|.|.|+ |.+|..++..|++.| ++|.+.+|+.+
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G-------~~V~~~~r~~~ 41 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAG-------AHVVVNYRQKA 41 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCC-------CEEEEEeCCch
Confidence 3468999996 999999999999999 89999888753
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.32 Score=46.98 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=53.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.+++..|.++| ..|++.... |.++.
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~-------AtVt~chs~----------------------------------T~~l~ 196 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNEN-------ATVTICHSK----------------------------------TKNLK 196 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 6789999999999888 788877532 12345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 197 ~~~~~ADIvIsAvGkp~~---i~--~~~ik~gavVIDv 229 (278)
T PRK14172 197 EVCKKADILVVAIGRPKF---ID--EEYVKEGAIVIDV 229 (278)
T ss_pred HHHhhCCEEEEcCCCcCc---cC--HHHcCCCcEEEEe
Confidence 557789999999987553 11 2457889999987
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.29 Score=47.64 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=53.4
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
++|+||| ...+|.+++..|.+.| ..|++.... |.++++
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~-------atVtv~hs~----------------------------------T~~l~~ 197 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAAN-------ATVTIAHSR----------------------------------TQDLAS 197 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHHH
Confidence 6899999 6789999999999988 788777422 234555
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.++.||+||.|+.-..+ +. ..++++|++||++.
T Consensus 198 ~~~~ADIvIsAvGkp~~---i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 198 ITREADILVAAAGRPNL---IG--AEMVKPGAVVVDVG 230 (297)
T ss_pred HHhhCCEEEEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 67889999999986443 11 34678899999873
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.16 Score=51.55 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=31.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
...|.|||+|..|.++|..|+++| ++|+++++.+.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G-------~~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAG-------VDVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCc
Confidence 357999999999999999999999 89999998753
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.13 Score=51.77 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=30.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
|.+|.|||+|..|.++|..|++.| ++|+++++.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G-------~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKG-------IKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCC-------CeEEEecCC
Confidence 568999999999999999999999 899999975
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.29 Score=53.52 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=54.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CCc-------------chHHHHHHhcCcCCccCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PSG-------------EKLTDVINRTNENVKYLPG 125 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~~-------------~~l~~~i~~~g~~~~~~~~ 125 (419)
.||+|+|+| +|+..|..|+.+|.. -+++++|.+.=. +.+ +.+.+.|++ + .|.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvv-----G~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~--i----np~ 175 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLC-----GELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAE--L----DPY 175 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCC-----CeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHH--H----CCC
Confidence 589999999 999999999999820 267888775311 000 001111111 1 122
Q ss_pred Ccc---CCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHh
Q 014757 126 IKL---GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 126 ~~l---~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~ 165 (419)
+.+ +..+. ..+.++.+.++|+||-|+-+...+-.+.+..
T Consensus 176 i~v~~~~~~i~-~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a 217 (722)
T PRK07877 176 LPVEVFTDGLT-EDNVDAFLDGLDVVVEECDSLDVKVLLREAA 217 (722)
T ss_pred CEEEEEeccCC-HHHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 211 11111 1245556788999999999988777776543
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.33 Score=46.95 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=53.9
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~~-------atVt~chs~----------------------------------T~~l~ 197 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEMN-------ATVTLCHSK----------------------------------TQNLP 197 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 6889999999999888 788877532 22344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 198 ~~~~~ADIvIsAvGk~~~---i~--~~~ik~gavVIDv 230 (284)
T PRK14177 198 SIVRQADIIVGAVGKPEF---IK--ADWISEGAVLLDA 230 (284)
T ss_pred HHHhhCCEEEEeCCCcCc---cC--HHHcCCCCEEEEe
Confidence 557889999999986544 11 3467889999987
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.32 Score=45.68 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=29.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEec
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVF 99 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r 99 (419)
....++|+|.|.|.+|..++..|.+.| ..|+ +.|.
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g-------~~vv~v~D~ 63 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAG-------AKVVAVSDS 63 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEECC
Confidence 345589999999999999999999999 7776 4444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.21 Score=47.01 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=33.1
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+..++|.|.|+ |.+|..++..|++.| ++|.+.+|+++.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G-------~~v~~~~r~~~~ 43 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAG-------AAVAIADLNQDG 43 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-------CeEEEEeCChHH
Confidence 44568999996 999999999999999 899999998754
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.3 Score=48.98 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=56.6
Q ss_pred CeEEEECc-chHHHHHHHHHH-HcCCCCCCCC-ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 62 SKVTVVGS-GNWGSVASKLIA-SNTLRLSSFH-DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La-~~G~~~~~~~-~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
+||||+|+ |.+|..|...|. +.. |+ .++.+....+.. |..+ .+.+... .++..++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~-----fp~~~~~~~ss~~s~-------------g~~~-~f~~~~~--~v~~~~~~ 59 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD-----FDAIRPVFFSTSQLG-------------QAAP-SFGGTTG--TLQDAFDI 59 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC-----CccccEEEEEchhhC-------------CCcC-CCCCCcc--eEEcCccc
Confidence 58999996 999999999998 544 22 234444432211 1111 1111111 22222222
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCC--cEEEEeecCc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGD--VEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~--tiivs~~nGi 181 (419)
+...+.|++|.|.++...+++...+.. .| ++||+.+.-.
T Consensus 60 -~~~~~vDivffa~g~~~s~~~~p~~~~---aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 60 -DALKALDIIITCQGGDYTNEIYPKLRE---SGWQGYWIDAASSL 100 (366)
T ss_pred -ccccCCCEEEEcCCHHHHHHHHHHHHh---CCCCeEEEECChhh
Confidence 246789999999998877776655543 46 6788877533
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.48 Score=49.09 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=30.5
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
||.|||+|..|.+.|..|.+.| ++|+++|+.+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G-------~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG-------WEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-------CEEEEECCCCc
Confidence 7999999999999999999999 99999998754
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.19 Score=48.21 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=34.7
Q ss_pred CCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 58 VLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+.++++.|-|+ +-+|..+|..|+++| ++|.++.|++++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g-------~~liLvaR~~~k 42 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG-------YNLILVARREDK 42 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCC-------CEEEEEeCcHHH
Confidence 455668999995 999999999999999 999999999876
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.33 Score=46.98 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=53.3
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.++|..|.+.+ ..|++.... |.+++
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~-------atVtichs~----------------------------------T~~l~ 195 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNEN-------ATVTIAHSR----------------------------------TKDLP 195 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 46899999 5788999999999888 788876422 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+.++.||+||.++....+ +. ..++++|+++|++
T Consensus 196 ~~~~~ADIvI~AvG~~~~---i~--~~~vk~GavVIDv 228 (284)
T PRK14170 196 QVAKEADILVVATGLAKF---VK--KDYIKPGAIVIDV 228 (284)
T ss_pred HHHhhCCEEEEecCCcCc---cC--HHHcCCCCEEEEc
Confidence 567889999999987553 11 2457789999986
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.21 Score=46.54 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=32.8
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+..++|.|.| .|.+|..++..|+++| +.|.+.+|+++.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g-------~~V~~~~r~~~~ 42 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADG-------AEVIVVDICGDD 42 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC-------CEEEEEeCCHHH
Confidence 4456899999 6999999999999999 899999998643
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.16 Score=52.38 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=33.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+..++|+|||||.-|.+.|+.|.+.| ++|+++.|+..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g-------~~v~vfEr~~~ 40 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREG-------HEVVVFERTDD 40 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCC-------CCceEEEecCC
Confidence 34578999999999999999999999 89999988764
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.19 Score=52.37 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=32.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+..++|+|||+|.-|.+.|..|.+.| ++|+++.++..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G-------~~v~vfE~~~~ 44 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREG-------HTVVVFEREKQ 44 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcC-------CeEEEEecCCC
Confidence 34578999999999999999999999 89999998754
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.26 Score=45.95 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=32.5
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+..++|.|.|+ |.+|..++..|++.| ++|.+.+|+++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G-------~~v~~~~r~~~~ 43 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAG-------ATVAFNDGLAAE 43 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcC-------CEEEEEeCCHHH
Confidence 44578999995 999999999999999 899999887653
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.34 Score=46.89 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=53.6
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.++|..|.+.+ ..|++.... |.+++
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~-------atVt~chs~----------------------------------T~nl~ 195 (282)
T PRK14166 157 GKDAVIIGASNIVGRPMATMLLNAG-------ATVSVCHIK----------------------------------TKDLS 195 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 5788999999999887 788866532 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+..+.||+||.|+.-..+ +. ..++++|+++|++.
T Consensus 196 ~~~~~ADIvIsAvGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 196 LYTRQADLIIVAAGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred HHHhhCCEEEEcCCCcCc---cC--HHHcCCCCEEEEec
Confidence 567889999999986543 11 24578899999873
|
|
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=92.52 E-value=1.2 Score=38.99 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.8
Q ss_pred CeEEEECcchHHHHHHHHHHHc
Q 014757 62 SKVTVVGSGNWGSVASKLIASN 83 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~ 83 (419)
+||+|+|+|.||..++..+.+.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~ 22 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER 22 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC
Confidence 5899999999999999988765
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.16 Score=51.62 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=30.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
..+|.|||+|..|.++|..|++.| ++|+++++.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G-------~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESD-------LRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCC-------CEEEEEcCC
Confidence 457999999999999999999999 899999985
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.35 Score=46.80 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=53.2
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.+++..|.+.+ ..|++.... |.++.
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~-------ATVt~chs~----------------------------------T~dl~ 196 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAK-------ATVTTCHRF----------------------------------TTDLK 196 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEEcCC----------------------------------CCCHH
Confidence 36899999 5789999999999888 788877532 12344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 197 ~~~k~ADIvIsAvGkp~~---i~--~~~vk~gavVIDv 229 (282)
T PRK14180 197 SHTTKADILIVAVGKPNF---IT--ADMVKEGAVVIDV 229 (282)
T ss_pred HHhhhcCEEEEccCCcCc---CC--HHHcCCCcEEEEe
Confidence 456789999999987543 11 2457789999987
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.24 Score=50.36 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=35.9
Q ss_pred CCCCCCCCCCCcC----eEEEECcchHHHHHHHHHHHc-CCCCCCCCc-eEEEEecCC
Q 014757 50 FSSGSDDGVLHKS----KVTVVGSGNWGSVASKLIASN-TLRLSSFHD-EVRMWVFEE 101 (419)
Q Consensus 50 ~~~~~~~~~~~~m----kI~IIGaG~mG~~lA~~La~~-G~~~~~~~~-~V~l~~r~~ 101 (419)
..+++..|-..+. .|.|||+|.+|++.|..|++. | . +|++++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g-------~~~V~vle~~~ 65 (407)
T TIGR01373 15 HRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHG-------ITNVAVLEKGW 65 (407)
T ss_pred CCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcC-------CCeEEEEEccc
Confidence 3556666555553 699999999999999999985 7 5 899999864
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.29 Score=49.76 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=33.1
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..+|||.|+|+ |.+|..++..|.++| ++|++++|++..
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G-------~~V~~l~R~~~~ 96 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRG-------YNVVAVAREKSG 96 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-------CEEEEEEechhh
Confidence 34579999995 999999999999999 999999998643
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.19 Score=51.01 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=31.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+|.|||+|..|.+.|..|++.| ++|+++++.++
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G-------~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAG-------IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCC-------CCEEEEECCCC
Confidence 58999999999999999999999 99999998774
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.19 Score=51.42 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=31.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
+++|.|||+|..|+..|..|++.| ++|++++..+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~G-------l~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRG-------VPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC-------CcEEEEEccC
Confidence 468999999999999999999999 8999999654
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.4 Score=46.73 Aligned_cols=72 Identities=24% Similarity=0.264 Sum_probs=53.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.++|..|.+.| ..|++.... |.+++
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~~-------ATVtvchs~----------------------------------T~nl~ 205 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKAD-------ATVTVVHSR----------------------------------TPDPE 205 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 46899999 5788999999999988 788877432 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.||+||.|+.-..+ +. ..++++|++||++.
T Consensus 206 ~~~~~ADIvv~AvGk~~~---i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 206 SIVREADIVIAAAGQAMM---IK--GDWIKPGAAVIDVG 239 (299)
T ss_pred HHHhhCCEEEEcCCCcCc---cC--HHHcCCCCEEEEee
Confidence 667899999999976421 21 34678899998863
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.39 Score=53.56 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=32.6
Q ss_pred CCCcCeEEEECcchHHHHH-HHHHHHcCCCCCCCCceEEEEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVA-SKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~l-A~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
+|.+++|.|||.|..|.+. |..|.+.| ++|+++|.++
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G-------~~V~~sD~~~ 38 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRG-------YSVSGSDLSE 38 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCC-------CeEEEECCCC
Confidence 3556679999999999997 99999999 9999999765
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.21 Score=53.02 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=32.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+|.|||+|..|..+|..|++.| ++|+++++.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G-------~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRG-------VDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC-------CcEEEEeCCCC
Confidence 458999999999999999999999 89999998764
|
|
| >COG1832 Predicted CoA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.3 Score=37.87 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=69.2
Q ss_pred cCeEEEECc----chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGS----GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
-++|+++|+ ..-+...+..|.++| ++|.=++.... .+.|.. -++..
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~G-------Y~ViPVNP~~~-------~~eiLG----------------~k~y~ 65 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKG-------YRVIPVNPKLA-------GEEILG----------------EKVYP 65 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCC-------CEEEeeCcccc-------hHHhcC----------------chhhh
Confidence 368999997 567888999999999 89888876432 133321 24567
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccC
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++.|.-...|+|-+..++..+.+++++.... +.-++.+|-|+.++
T Consensus 66 sL~dIpe~IDiVdvFR~~e~~~~i~~eal~~---~~kv~W~QlGi~n~ 110 (140)
T COG1832 66 SLADIPEPIDIVDVFRRSEAAPEVAREALEK---GAKVVWLQLGIRNE 110 (140)
T ss_pred cHHhCCCCCcEEEEecChhhhHHHHHHHHhh---CCCeEEEecCcCCH
Confidence 7777666899999999999999999886553 46788899898764
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.2 Score=52.66 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=33.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++.+|.|||+|..|.++|..|++.| ++|+++++.++.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~G-------i~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRG-------VSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEeCCCCC
Confidence 4568999999999999999999999 899999987643
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.16 Score=52.65 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=52.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC------------CCc---chHHHHHHhcCcCCccCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL------------PSG---EKLTDVINRTNENVKYLPGI 126 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~------------~~~---~~l~~~i~~~g~~~~~~~~~ 126 (419)
++|+|||+|.-|.+.|..|+++| |+|+++.+.+.. +.. +..++.+.+.|....
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G-------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~----- 191 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAG-------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFK----- 191 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCC-------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEE-----
Confidence 79999999999999999999999 999999986543 000 122233444332111
Q ss_pred ccCCCeEecCCHHHHhcCCCEEEEccCcc
Q 014757 127 KLGKNVVADPDLENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 127 ~l~~~i~~~~~~~ea~~~aDlVilavp~~ 155 (419)
+...+-..-+.++...+.|.|++++.+.
T Consensus 192 -~~~~vG~~it~~~L~~e~Dav~l~~G~~ 219 (457)
T COG0493 192 -LNVRVGRDITLEELLKEYDAVFLATGAG 219 (457)
T ss_pred -EcceECCcCCHHHHHHhhCEEEEecccc
Confidence 1111111334566667789999998763
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.24 Score=53.70 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
...+.+|.|||+|..|.++|..|++.| ++|+++.|.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~G-------i~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKG-------FDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcC-------CeEEEEeccc
Confidence 445579999999999999999999999 8999999875
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.4 Score=47.62 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=32.2
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+|+|.|.|+ |.+|+.++..|.++| ++|++.+|+.+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G-------~~V~~~~r~~~ 45 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERG-------YTVKGTVRNPD 45 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc-------CEEEEEeCCch
Confidence 4578999997 999999999999999 99999998764
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.4 Score=46.65 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=53.4
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 160 Gk~vvViGrS~iVGkPla~lL~~~~-------aTVt~chs~----------------------------------T~~l~ 198 (294)
T PRK14187 160 GSDAVVIGRSNIVGKPMACLLLGEN-------CTVTTVHSA----------------------------------TRDLA 198 (294)
T ss_pred CCEEEEECCCccchHHHHHHHhhCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 6789999999999888 788876532 23345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+.++.||+||.++.-..+ + -..++++|++||++
T Consensus 199 ~~~~~ADIvVsAvGkp~~---i--~~~~ik~gaiVIDV 231 (294)
T PRK14187 199 DYCSKADILVAAVGIPNF---V--KYSWIKKGAIVIDV 231 (294)
T ss_pred HHHhhCCEEEEccCCcCc---c--CHHHcCCCCEEEEe
Confidence 567889999999986543 1 12456789999987
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.19 Score=51.00 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=31.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.||.|||+|..|.++|..|+++| ++|+++.+.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G-------~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG-------WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCc
Confidence 58999999999999999999999 89999998765
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.23 Score=53.00 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=31.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.++|.|||+|..|.++|..|+++| ++|.++.|++
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G-------~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQG-------RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcC-------CEEEEEcccc
Confidence 468999999999999999999999 9999999976
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.37 Score=47.79 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=53.1
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.++|..|.+.+ ..|++.... |.+++
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~-------ATVTicHs~----------------------------------T~nl~ 252 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHD-------ATVSTVHAF----------------------------------TKDPE 252 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCC-------CEEEEEcCC----------------------------------CCCHH
Confidence 36899999 6788999999999888 788776432 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ + -..++++|++||++
T Consensus 253 ~~~~~ADIvIsAvGkp~~---v--~~d~vk~GavVIDV 285 (345)
T PLN02897 253 QITRKADIVIAAAGIPNL---V--RGSWLKPGAVVIDV 285 (345)
T ss_pred HHHhhCCEEEEccCCcCc---c--CHHHcCCCCEEEEc
Confidence 567899999999986543 1 13457889999986
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.78 Score=48.77 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=52.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcc---hHHHHHHhcCcCCccCCCCccC-CCeEec
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGE---KLTDVINRTNENVKYLPGIKLG-KNVVAD 135 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~---~l~~~i~~~g~~~~~~~~~~l~-~~i~~~ 135 (419)
...||+|||+|.+|+.+...|+..|. .++..++.+....+.. +++ ++.+. ..+++.+. .+....
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~------~~I~~vd~D~v~SNlnRIgEl~-e~A~~-----~n~~v~v~~i~~~~~ 195 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGF------PRFHAIVTDAEEHALDRIHELA-EIAEE-----TDDALLVQEIDFAED 195 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCC------CcEEEEeccccchhhhHHHHHH-HHHHH-----hCCCCceEeccCCcc
Confidence 44689999999999999999999995 6777776554321111 111 11111 11222110 011223
Q ss_pred CCHHHHhcCCCEEEEccCcchHH
Q 014757 136 PDLENAVKDANMLVFVTPHQFME 158 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~ 158 (419)
.+..+.+++.|+||..+......
T Consensus 196 ~dl~ev~~~~DiVi~vsDdy~~~ 218 (637)
T TIGR03693 196 QHLHEAFEPADWVLYVSDNGDID 218 (637)
T ss_pred hhHHHhhcCCcEEEEECCCCChH
Confidence 45667788999999998865433
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=92.07 E-value=4.1 Score=39.41 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=67.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHc----CCCCCCCCceEEEEecCCCCC-CcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 61 KSKVTVVGSGNWGSVASKLIASN----TLRLSSFHDEVRMWVFEETLP-SGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~----G~~~~~~~~~V~l~~r~~~~~-~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
..||.|+|+|+-|..+|..|... |.-..+-..+++++|+.--.. ++.++ ...+..-... ... ...
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l-~~~~~~~a~~--------~~~-~~~ 94 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDL-TPFKKPFARK--------DEE-KEG 94 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcc-hHHHHHHHhh--------cCc-ccC
Confidence 36899999999999999999887 731111113788888753110 11111 1111100000 000 123
Q ss_pred CCHHHHhc--CCCEEEEcc--CcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVK--DANMLVFVT--PHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~--~aDlVilav--p~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++.|+++ ++|++|=+. +.-..+++++....+. ++-+|..++|...
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~ 144 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSN-ERPIIFALSNPTS 144 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC-CCCEEEECCCcCC
Confidence 57888888 889987665 3466778888877654 5778889998554
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.23 Score=47.13 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=30.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCC----ceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFH----DEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~----~~V~l~~r~~ 101 (419)
+..||.|||+|.+|+.++..|++.|+...... .+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 45799999999999999999999741000000 2788888764
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.3 Score=45.69 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=32.6
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..++|.|.| .|.+|..++..|++.| ++|.+++|+++.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g-------~~v~~~~r~~~~ 40 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEG-------AKVVIADLNDEA 40 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-------CeEEEEeCCHHH
Confidence 346899999 5999999999999999 899999998754
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.21 Score=50.29 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=31.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+|.|||+|.-|.+.|..|+++| ++|+++++.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSG-------LKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC-------CcEEEEeCCCc
Confidence 57999999999999999999999 89999998764
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.49 Score=45.75 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=52.8
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~-------AtVtichs~----------------------------------T~nl~ 195 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERH-------ATVTIAHSR----------------------------------TADLA 195 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 6789999999999887 788876432 22345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 196 ~~~~~ADIvI~AvGk~~~---i~--~~~ik~gaiVIDv 228 (282)
T PRK14182 196 GEVGRADILVAAIGKAEL---VK--GAWVKEGAVVIDV 228 (282)
T ss_pred HHHhhCCEEEEecCCcCc---cC--HHHcCCCCEEEEe
Confidence 557889999999986432 11 2457889999986
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.23 Score=51.58 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+|.+++|.|||+|.-|.+.|..|+++| ++|+++..+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g-------~~v~v~E~~~~ 38 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRG-------YPVTVLEADPV 38 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCC-------CcEEEEecCCC
Confidence 366778999999999999999999999 89999987654
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.28 Score=51.80 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=32.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
....+|.|||+|..|.++|..|+++| ++|++++|++
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G-------~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDG-------RRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcC-------CeEEEEECcC
Confidence 34458999999999999999999999 8999999975
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=91.91 E-value=2.1 Score=44.28 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=44.2
Q ss_pred eEEEECcchHHHH-HHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 63 KVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 63 kI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+|.|||.|..|.+ +|..|++.| ++|+++|..... ..+.+++.|.. +....+. +.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G-------~~v~~~D~~~~~-----~~~~l~~~gi~------------~~~g~~~-~~ 55 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG-------YQVSGSDIAENA-----TTKRLEALGIP------------IYIGHSA-EN 55 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC-------CeEEEECCCcch-----HHHHHHHCcCE------------EeCCCCH-HH
Confidence 4889999999998 999999999 999999976431 13445543321 1111233 33
Q ss_pred hcCCCEEEEcc
Q 014757 142 VKDANMLVFVT 152 (419)
Q Consensus 142 ~~~aDlVilav 152 (419)
+.++|+||.+-
T Consensus 56 ~~~~d~vV~sp 66 (448)
T TIGR01082 56 LDDADVVVVSA 66 (448)
T ss_pred CCCCCEEEECC
Confidence 56799888763
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.37 Score=51.06 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=32.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+++.|+|+|.+|.+++..|++.| .+|++++|+.++
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G-------~~V~i~nR~~e~ 414 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKG-------ARVVIANRTYER 414 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-------CEEEEEcCCHHH
Confidence 468999999999999999999999 799999998665
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.21 Score=49.99 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=29.6
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.|.|||+|.+|.+.|..|++.| .+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g-------~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHG-------KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCC-------CeEEEEeccC
Confidence 5899999999999999999999 8999999853
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.41 Score=47.68 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=53.3
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~-------ATVTicHs~----------------------------------T~nl~ 269 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQRED-------ATVSIVHSR----------------------------------TKNPE 269 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCC-------CeEEEeCCC----------------------------------CCCHH
Confidence 36899999 6889999999999888 788876432 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 270 ~~~r~ADIVIsAvGkp~~---i~--~d~vK~GAvVIDV 302 (364)
T PLN02616 270 EITREADIIISAVGQPNM---VR--GSWIKPGAVVIDV 302 (364)
T ss_pred HHHhhCCEEEEcCCCcCc---CC--HHHcCCCCEEEec
Confidence 567899999999986543 11 2457889999986
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.46 Score=45.99 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=52.2
Q ss_pred cCeEEEEC-cchHHHHHHHHHHH--cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVG-SGNWGSVASKLIAS--NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~--~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
-+++.||| .+.+|.+++..|.+ .+ ..|++.... |.+
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~~~-------atVtvchs~----------------------------------T~~ 196 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRSEN-------ATVTLCHTG----------------------------------TRD 196 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhccCC-------CEEEEeCCC----------------------------------CCC
Confidence 36899999 57899999999987 55 667766432 234
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++.++.||+||.++....+ +. ..++++|++||++
T Consensus 197 l~~~~k~ADIvV~AvGkp~~---i~--~~~ik~GavVIDv 231 (284)
T PRK14193 197 LAAHTRRADIIVAAAGVAHL---VT--ADMVKPGAAVLDV 231 (284)
T ss_pred HHHHHHhCCEEEEecCCcCc---cC--HHHcCCCCEEEEc
Confidence 55567889999999986543 11 3467889999986
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.5 Score=45.81 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=52.1
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-+++.||| ...+|.+++..|.+.+ ..|++.... |.+++
T Consensus 159 GK~vvViGrS~iVGkPla~lL~~~~-------ATVtichs~----------------------------------T~~L~ 197 (288)
T PRK14171 159 GKNVVIIGRSNIVGKPLSALLLKEN-------CSVTICHSK----------------------------------THNLS 197 (288)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC-------CEEEEeCCC----------------------------------CCCHH
Confidence 36899999 5788999999999887 788766421 23345
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++.-..+ +. ..++++|++||++
T Consensus 198 ~~~~~ADIvV~AvGkp~~---i~--~~~vk~GavVIDv 230 (288)
T PRK14171 198 SITSKADIVVAAIGSPLK---LT--AEYFNPESIVIDV 230 (288)
T ss_pred HHHhhCCEEEEccCCCCc---cC--HHHcCCCCEEEEe
Confidence 557889999999985432 11 2457889999987
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.51 Score=46.84 Aligned_cols=37 Identities=27% Similarity=0.207 Sum_probs=32.4
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..++|.|.|+ |.+|+.++..|++.| ++|++.+|+++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G-------~~V~~~~r~~~~ 41 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG-------YTVRATVRDPAN 41 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC-------CEEEEEEcCcch
Confidence 4568999995 999999999999999 899999987654
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.22 Score=49.82 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=30.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.|.|||+|.-|.++|..|+++| ++|++++|.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G-------~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSG-------LKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCC-------CEEEEEeCCCc
Confidence 3899999999999999999999 89999999864
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.45 Score=49.07 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=32.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+|||+|+|+|.=|.+.+..|.+.| .+|+++|.++.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-------~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-------AEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-------CeEEEEcCCCC
Confidence 789999999999999999999999 99999997654
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.25 Score=46.49 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=31.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|+|+|.+|+.++..|++.|. .+++++|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GV------g~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGV------GKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC------CEEEEECCCE
Confidence 4689999999999999999999995 6899999764
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.21 Score=54.33 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=31.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
++|.|||+|.+|.+.|..|++.| ++|++++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G-------~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRG-------WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCC-------CeEEEEecCC
Confidence 58999999999999999999999 8999999874
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.25 Score=52.32 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=28.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+||+|||+|.-|.+.++.|.+.| .+|+++.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g-------~~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG-------LEVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT--------EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCC-------CCCeEEecCCCC
Confidence 68999999999999999999999 899999987654
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.55 Score=45.53 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=52.1
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.||| ...+|.++|..|.+.|. +.+..|++.... |.+++
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~~~---~~~AtVtvchs~----------------------------------T~~l~ 195 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQKHP---DTNATVTLLHSQ----------------------------------SENLT 195 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhCcC---CCCCEEEEeCCC----------------------------------CCCHH
Confidence 36899999 57889999999998730 000567655321 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+.++.||+||.++....+ +. ..++++|++||++
T Consensus 196 ~~~~~ADIvV~AvG~p~~---i~--~~~ik~GavVIDv 228 (287)
T PRK14181 196 EILKTADIIIAAIGVPLF---IK--EEMIAEKAVIVDV 228 (287)
T ss_pred HHHhhCCEEEEccCCcCc---cC--HHHcCCCCEEEEe
Confidence 667899999999986543 11 3467889999987
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.26 Score=50.18 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
++|.|||+|.-|++.|..|+++| ++|.++++.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G-------~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAG-------IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-------CcEEEEecCCC
Confidence 58999999999999999999999 89999998754
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.28 Score=52.12 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=32.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+.+|.|||+|..|.++|..|++.| ++|+++++.++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G-------~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQG-------VPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC-------CcEEEEeCCCC
Confidence 4458999999999999999999999 89999998864
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.7 Score=43.27 Aligned_cols=109 Identities=9% Similarity=0.097 Sum_probs=56.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccC-----CCC--ccC-CCe
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYL-----PGI--KLG-KNV 132 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~-----~~~--~l~-~~i 132 (419)
++||+|.|+|.+|..+.+.|.+.+. +.++.++..+.-. +.+.++--++-.-.+.++. .+. .+. ..+
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~-----~~~l~vvaind~~-~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i 74 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGR-----RAEITVVAINELA-DAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAI 74 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCC-----CCceEEEEecCCC-CHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEE
Confidence 5799999999999999999887641 1356666444311 2223222222111110100 010 111 123
Q ss_pred Eec--CCHHHH-h--cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 133 VAD--PDLENA-V--KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 133 ~~~--~~~~ea-~--~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.. .++++. . .++|+||.|+.....++..... +..|...|.++
T Consensus 75 ~v~~~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~---l~aGAk~V~iS 122 (336)
T PRK13535 75 RLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAH---IAAGAKKVLFS 122 (336)
T ss_pred EEEEcCCcccCcccccCCCEEEEccchhhhHHHHHHH---HHcCCEEEEec
Confidence 332 344432 2 4799999999987666554332 23454444443
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.25 Score=51.15 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=32.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|||+|+|+|.-|.+-|..|+++| ++|+++.++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g-------~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAG-------YDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC-------CceEEEeccCc
Confidence 79999999999999999999999 99999998764
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.42 Score=46.42 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=31.7
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.++|.|.|+ |.+|..+|..|++.| ++|.+.+|+.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G-------~~Vi~~~R~~~~ 76 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRG-------ATVVAVARREDL 76 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 367999995 999999999999999 899999998654
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.33 Score=51.46 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=33.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+...+|.|||+|..|..+|..|++.| ++|+++++.++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G-------~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYG-------VRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC-------CcEEEEecCCC
Confidence 44568999999999999999999999 89999999864
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.26 Score=49.83 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=32.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+|.|||+|..|..+|..|++.| ++|+++++.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G-------~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAG-------IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcC-------CCEEEEEcCCc
Confidence 358999999999999999999999 89999998864
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.42 Score=45.78 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=32.3
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+.+++|.|.|+ |.+|..++..|++.| ++|.+++|+.+.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G-------~~V~~~~r~~~~ 42 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALG-------MKLVLADVQQDA 42 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC-------CEEEEEeCChHH
Confidence 34568999985 899999999999999 899999987543
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.29 Score=49.76 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=33.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.++.|.|||+|.-|++.|..|+++| .+|.++.+..+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G-------~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG-------LDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC-------CeEEEEecCCCC
Confidence 4568999999999999999999999 899999997654
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.71 Score=45.52 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=33.4
Q ss_pred CCCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 58 VLHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
-+.+++|.|.| +|-+|+.++..|.+.| ++|.+..|+.+.
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g-------~~V~~~~r~~~~ 45 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKG-------YAVNTTVRDPEN 45 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCC-------CEEEEEECCCCC
Confidence 34468899999 7999999999999999 899888887643
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=1 Score=46.41 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=31.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.++|.|+|.|..|.+.|..|++.| ++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g-------~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG-------AEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCCC
Confidence 468999999999999999999999 89999997654
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.30 E-value=6.7 Score=37.70 Aligned_cols=110 Identities=13% Similarity=0.132 Sum_probs=68.7
Q ss_pred CCeEecCCHHHHhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEE-
Q 014757 130 KNVVADPDLENAVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVL- 206 (419)
Q Consensus 130 ~~i~~~~~~~ea~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~- 206 (419)
.++++++|-.|+++++|++|+.+|- .....+.+.+.+++++|.+|...=. +++ ..+...+++ ++. +..+.
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCT-Ipt-----~~ly~~le~-l~R~DvgIsS 199 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACT-IPT-----TKFAKIFKD-LGRDDLNVTS 199 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEecccc-CCH-----HHHHHHHHH-hCcccCCeec
Confidence 3577888777889999999999997 4568889999999999998874321 321 344555554 342 22111
Q ss_pred eCcchHHHHHhcCceeEEEee-cCCHHHHHHHHHHhCCCCcEEEE
Q 014757 207 MGANIANEIAVEKFSEATVGY-RDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 207 ~gp~~a~e~~~g~~~~~~~~~-~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
.-|..+-+ ..|+ ...+. ..+++..+++.++-++.+...+.
T Consensus 200 ~HPaaVPg-t~Gq---~~i~egyAtEEqI~klveL~~sa~k~ay~ 240 (342)
T PRK00961 200 YHPGAVPE-MKGQ---VYIAEGYADEEAVEKLYEIGKKARGNAFK 240 (342)
T ss_pred cCCCCCCC-CCCc---eecccccCCHHHHHHHHHHHHHhCCCeee
Confidence 11211100 0122 12221 13789999999999887766554
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.31 Score=51.32 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=32.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
++....|.|||+|..|.+.|..|++.| .+|.+++++
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG-------l~V~LvEk~ 38 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRG-------LSVLLCEQD 38 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCC-------CeEEEEecC
Confidence 344568999999999999999999999 899999986
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.25 Score=49.83 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=31.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+|.|||+|..|.++|..|+++| ++|+++++.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G-------~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHG-------FSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCC-------CEEEEEcCCC
Confidence 58999999999999999999999 8999999875
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.82 Score=47.66 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=30.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+||+|+|+|.=|.+.++.|.+.| .+|+++|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g-------~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHL-------PAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcC-------CEEEEEcCCC
Confidence 468999999999999999999999 8999999654
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.32 Score=46.78 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=31.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
...+|.|+|+|.+|+..|..|++.|. .+++++|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV------g~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI------GAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC------CEEEEEeCCE
Confidence 34689999999999999999999995 6899999764
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.28 Score=49.00 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=29.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.|.|||+|.+|.+.|..|++.| ++|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G-------~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRG-------LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-------CeEEEEeCCC
Confidence 5899999999999999999999 8999999864
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.3 Score=46.04 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=29.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv------g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF------GQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC------CeEEEEeCCE
Confidence 68999999999999999999995 6799999864
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.54 Score=45.35 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=50.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh--cCcCCccCCCCccCCCeEe-cC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR--TNENVKYLPGIKLGKNVVA-DP 136 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~--~g~~~~~~~~~~l~~~i~~-~~ 136 (419)
...||++||.|.+-...-....+.|. ...|..+|++++. .++...+-+ .|+ ..++.+ +.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~-----~~~v~~iD~d~~A---~~~a~~lv~~~~~L----------~~~m~f~~~ 181 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGP-----GARVHNIDIDPEA---NELARRLVASDLGL----------SKRMSFITA 181 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT-------EEEEEESSHHH---HHHHHHHHH---HH-----------SSEEEEES
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCC-----CCeEEEEeCCHHH---HHHHHHHHhhcccc----------cCCeEEEec
Confidence 34599999999998775444434330 0457788888753 122222222 111 112222 22
Q ss_pred CHHH---HhcCCCEEEEccCcc----hHHHHHHHHhccCCCCcEEEE-eecCc
Q 014757 137 DLEN---AVKDANMLVFVTPHQ----FMEGICKRLVGKVNGDVEAIS-LIKGM 181 (419)
Q Consensus 137 ~~~e---a~~~aDlVilavp~~----~~~~vl~~l~~~l~~~tiivs-~~nGi 181 (419)
|..+ .+.++|+|+++--.. ..+++++.|.+.+++|+.|+. ..+|+
T Consensus 182 d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl 234 (276)
T PF03059_consen 182 DVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGL 234 (276)
T ss_dssp -GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GG
T ss_pred chhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhh
Confidence 2221 256899999998776 899999999999999987764 34554
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.28 Score=51.35 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=33.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|.+++|.|||+|.=|.+-|..|+++| ++|+++.++..
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G-------~~V~VlE~~~~ 37 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAG-------LKVTVLEKNDR 37 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCC-------CEEEEEEecCC
Confidence 35679999999999999999999999 99999997654
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.84 Score=45.30 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=46.3
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEe-cCCCCCCcchHHHHHHh-cCcCCcc-CCC--Ccc-CCCeEecCC
Q 014757 64 VTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWV-FEETLPSGEKLTDVINR-TNENVKY-LPG--IKL-GKNVVADPD 137 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~-r~~~~~~~~~l~~~i~~-~g~~~~~-~~~--~~l-~~~i~~~~~ 137 (419)
|+|+|.|.||...+..+.+... .+|..++ .+++. ...+.. .+....+ +++ ..+ ..++....+
T Consensus 1 VaInG~GrIGr~varav~~~~d------~elVaVnD~~~~~------~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~ 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDD------MKLVGVTKTSPDF------EAYRAKELGIPVYAASEEFIPRFEEAGIEVAGT 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCC------cEEEEEecCChHH------HHHHHHHhCCCEEeecCCcceEeccCceEecCC
Confidence 6899999999999999876531 4554433 33221 112221 2211100 111 011 123455667
Q ss_pred HHHHhcCCCEEEEccCcc
Q 014757 138 LENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~ 155 (419)
+++...++|+|+.|+|..
T Consensus 69 ~eeLl~~vDiVve~Tp~~ 86 (333)
T TIGR01546 69 LEDLLEKVDIVVDATPGG 86 (333)
T ss_pred HHHHhhcCCEEEECCCCC
Confidence 888888999999999973
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.45 Score=49.87 Aligned_cols=39 Identities=23% Similarity=0.157 Sum_probs=33.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHH--cCCCCCCCCceEEEEecCCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIAS--NTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~--~G~~~~~~~~~V~l~~r~~~~ 103 (419)
....+||+|||+|.-|.+.|..|++ .| ++|++|++.+..
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g-------~~Vtv~E~~p~p 63 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDG-------ARVDIIERLPTP 63 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCC-------CeEEEEecCCCC
Confidence 3445789999999999999999987 57 899999998743
|
|
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.4 Score=43.84 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=21.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNT 84 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G 84 (419)
++||||+|.|.||...++.+.+..
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~ 28 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRD 28 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCC
Confidence 479999999999999999987653
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.05 E-value=1.2 Score=41.71 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=31.2
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|+|.|+|+ |.+|..++..|++.| ++|.+.+|+++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-------~~V~~~~r~~~~ 36 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-------HKVIATGRRQER 36 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 68999995 999999999999999 899999997643
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.24 Score=50.21 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=30.2
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G-------~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSG-------LEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCC-------CEEEEEcCCC
Confidence 6999999999999999999999 8999999875
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.33 Score=49.07 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=31.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|++|.|||+|..|...|..|++.| .+|.+++++..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G-------~~V~viEk~~~ 35 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLN-------KRVLVVEKRNH 35 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC-------CeEEEEecCCC
Confidence 468999999999999999999999 89999997643
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.43 Score=50.10 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=31.7
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.......|.|||+|.||.++|..|++.+- ..+|.++++..
T Consensus 41 ~~~~~~DVvIIGGGI~G~a~A~~La~~~~-----~~~V~VlEk~~ 80 (497)
T PTZ00383 41 LGSDVYDVVIVGGGVTGTALFYTLSKFTN-----LKKIALIERRS 80 (497)
T ss_pred ccCCcccEEEECccHHHHHHHHHHHhhCC-----CCEEEEEecCc
Confidence 34445689999999999999999999630 04899999864
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.56 Score=47.01 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..|-|||+|..|+++|..|++.| ..|.++.|+-.
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdG-------RrVhVIERDl~ 79 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDG-------RRVHVIERDLS 79 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCC-------cEEEEEecccc
Confidence 35999999999999999999999 89999999853
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.75 E-value=1 Score=44.94 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=52.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCC--
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPD-- 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~-- 137 (419)
|++|+|||.|..|..|+..-..-| ++|.+.+.+++.. +..+.... +.. .+|
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG-------~~v~vLdp~~~~P-----A~~va~~~--------------i~~~~dD~~ 54 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLG-------IKVIVLDPDADAP-----AAQVADRV--------------IVAAYDDPE 54 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcC-------CEEEEecCCCCCc-----hhhcccce--------------eecCCCCHH
Confidence 578999999999999999999999 9999999877541 22232211 111 232
Q ss_pred -HHHHhcCCCEE---EEccCcchHHHHHHH
Q 014757 138 -LENAVKDANML---VFVTPHQFMEGICKR 163 (419)
Q Consensus 138 -~~ea~~~aDlV---ilavp~~~~~~vl~~ 163 (419)
+.+.+..||+| |--||...++.+...
T Consensus 55 al~ela~~~DViT~EfE~V~~~aL~~l~~~ 84 (375)
T COG0026 55 ALRELAAKCDVITYEFENVPAEALEKLAAS 84 (375)
T ss_pred HHHHHHhhCCEEEEeeccCCHHHHHHHHhh
Confidence 34556789998 566666666665544
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.35 Score=48.59 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=32.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+|.|||+|.-|.+.|..|++.| .+|+++++.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G-------~~v~v~E~~~~~ 40 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSG-------LRVALLAPRAPP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCC-------CeEEEEecCCCc
Confidence 47999999999999999999999 899999987653
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.67 Score=44.60 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=52.9
Q ss_pred cCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-+++.|||.+ .+|.+++..|.+.+ ..|++..... .++.
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~n-------aTVtvcHs~T----------------------------------~~l~ 194 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNAN-------ATVTVCHSRT----------------------------------KDLA 194 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhCC-------CEEEEEcCCC----------------------------------CCHH
Confidence 3689999964 57899999999988 7888776432 2344
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.||+||.++--..+-. .++++++.++|+.
T Consensus 195 ~~~k~ADIvv~AvG~p~~i~-----~d~vk~gavVIDV 227 (283)
T COG0190 195 SITKNADIVVVAVGKPHFIK-----ADMVKPGAVVIDV 227 (283)
T ss_pred HHhhhCCEEEEecCCccccc-----cccccCCCEEEec
Confidence 55678999999997644321 4678899999987
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.68 E-value=1.7 Score=43.04 Aligned_cols=89 Identities=10% Similarity=0.093 Sum_probs=51.9
Q ss_pred CeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+|.|+|+|.+|...+..+.+ .|. ..|+++++++++ .+..++.+.. ....+..+
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~------~~vi~~~~~~~k------~~~a~~~~~~-------------~~~~~~~~ 219 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPE------SKLVVFGKHQEK------LDLFSFADET-------------YLIDDIPE 219 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCC------CcEEEEeCcHhH------HHHHhhcCce-------------eehhhhhh
Confidence 479999999999988887765 331 578889988765 3333321210 01111112
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEE
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs 176 (419)
. ..+|+||-++........++.....++++..++.
T Consensus 220 ~-~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 220 D-LAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred c-cCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 1 2489999999743233344444455555544443
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.43 Score=51.90 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=32.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+||+|||+|..|...|..|++.| ++|+++++++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G-------~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG-------HDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CcEEEEecCCC
Confidence 4579999999999999999999999 89999998754
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.95 Score=44.31 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=51.9
Q ss_pred CeEEEECcchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH-
Q 014757 62 SKVTVVGSGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE- 139 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~- 139 (419)
++|+|+|+|-+|+. |-.++++ | ++|++++++..+ + -+.++..|... + +..+.|++
T Consensus 183 ~~vgI~GlGGLGh~-aVq~AKAMG-------~rV~vis~~~~k--k---eea~~~LGAd~-f---------v~~~~d~d~ 239 (360)
T KOG0023|consen 183 KWVGIVGLGGLGHM-AVQYAKAMG-------MRVTVISTSSKK--K---EEAIKSLGADV-F---------VDSTEDPDI 239 (360)
T ss_pred cEEEEecCcccchH-HHHHHHHhC-------cEEEEEeCCchh--H---HHHHHhcCcce-e---------EEecCCHHH
Confidence 58999999988854 6666665 7 899999998743 2 34455444210 0 12222432
Q ss_pred --HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 --NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 --ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
++...-|.++-++.+. .+..++.+..+++.+..+|.+
T Consensus 240 ~~~~~~~~dg~~~~v~~~-a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 240 MKAIMKTTDGGIDTVSNL-AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred HHHHHHhhcCcceeeeec-cccchHHHHHHhhcCCEEEEE
Confidence 2334568888777743 222233444445554444433
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.1 Score=48.26 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=32.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
...++|.|||+|..|.+.|..|.+.| ++|+++++++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G-------~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG-------YEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-------CeEEEEecCCC
Confidence 34568999999999999999999999 89999988653
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.54 Score=43.62 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=31.4
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEE-ecCCCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMW-VFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~-~r~~~~ 103 (419)
.+++|.|+|+ |.+|..++..|++.| ++|.+. +|+++.
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g-------~~v~~~~~r~~~~ 42 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEG-------AKVVIAYDINEEA 42 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-------CEEEEEcCCCHHH
Confidence 3468999995 999999999999999 899888 887644
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.47 Score=47.75 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=33.5
Q ss_pred CCCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 57 GVLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 57 ~~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
|....|||.|.|+ |.+|+.++..|.+.| ++|+.++|..
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G-------~~V~~v~r~~ 55 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEG-------HYIIASDWKK 55 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCC-------CEEEEEEecc
Confidence 4456689999996 999999999999999 9999999864
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=90.24 E-value=4.3 Score=38.72 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=64.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHc----CCCCCCCCceEEEEecCCCCC-CcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 61 KSKVTVVGSGNWGSVASKLIASN----TLRLSSFHDEVRMWVFEETLP-SGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~----G~~~~~~~~~V~l~~r~~~~~-~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
..||.|+|+|+-|..+|..|.+. |...++-..+++++|+.--.. +++++ ...+..-.+.. ......
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l-~~~~~~~a~~~--------~~~~~~ 95 (255)
T PF03949_consen 25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDL-NPHKKPFARKT--------NPEKDW 95 (255)
T ss_dssp G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSH-SHHHHHHHBSS--------STTT--
T ss_pred HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccC-ChhhhhhhccC--------cccccc
Confidence 46899999999999999999998 831000003688888752110 11121 11111000000 000112
Q ss_pred CCHHHHhcCC--CEEEEcc--CcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVKDA--NMLVFVT--PHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~~a--DlVilav--p~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++.|+++.+ |++|=+. +.-..+++++...++. ++-+|..++|...
T Consensus 96 ~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~-erPIIF~LSNPt~ 145 (255)
T PF03949_consen 96 GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHN-ERPIIFPLSNPTP 145 (255)
T ss_dssp SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHS-SSEEEEE-SSSCG
T ss_pred cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccC-CCCEEEECCCCCC
Confidence 5788888887 9987764 4467888888877754 4678889999654
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=3.6 Score=42.71 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=28.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.||+|+|+|.-|.+.++.|. .| .+|+++|.++
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~g-------~~v~v~D~~~ 38 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-NK-------YDVIVYDDLK 38 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-CC-------CEEEEECCCC
Confidence 58999999999999999998 48 8999999554
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.38 Score=49.46 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=30.3
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+|.|||+|..|+..|..|++.| .+|+++.+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G-------~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG-------VPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC-------CcEEEEecccc
Confidence 6999999999999999999999 89999986554
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.5 Score=44.97 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=32.0
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..++|.|.|+ |.+|..++..|++.| ++|.+.+|+++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G-------~~V~~~~r~~~~ 39 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQG-------YTVYGAARRVDK 39 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-------CEEEEEeCCHHH
Confidence 3468999995 999999999999999 899999998643
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.5 Score=43.61 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=28.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.+|.|+|+|.+|...++.+...| .+|.+++|+
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G-------~~vi~~~~~ 205 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG-------FEVYVLNRR 205 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-------CeEEEEecC
Confidence 57999999999999998888888 789999884
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.46 Score=45.46 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..|+|||+|.-|.+-|..|.++| .+|++++++.-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG-------~~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAG-------REVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcC-------cEEEEEEcCCCc
Confidence 46999999999999999999999 999999987643
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.6 Score=43.13 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=32.9
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+.+++|.|.|+ |.+|..++..|+++| ++|.+++|+++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g-------~~v~~~~r~~~~ 41 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADG-------AKVVIYDSNEEA 41 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-------CEEEEEeCChhH
Confidence 34468999995 999999999999999 899999998654
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.15 E-value=1.5 Score=42.82 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=60.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~ 138 (419)
...+|+.||.|..|..-...+++..- +..++.+|++++. ++.-++.-.. ..+ +..++++ +.|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p-----~~~~~giD~d~~a------i~~Ar~~~~~---~~g--L~~rV~F~~~Da 186 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP-----TTSFHNFDIDPSA------NDVARRLVSS---DPD--LSKRMFFHTADV 186 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC-----CCEEEEEeCCHHH------HHHHHHHhhh---ccC--ccCCcEEEECch
Confidence 55789999999998765555544430 0357888887654 2211111000 000 1112222 1222
Q ss_pred HHH---hcCCCEEEEccC----cchHHHHHHHHhccCCCCcEEEEe-ecCc
Q 014757 139 ENA---VKDANMLVFVTP----HQFMEGICKRLVGKVNGDVEAISL-IKGM 181 (419)
Q Consensus 139 ~ea---~~~aDlVilavp----~~~~~~vl~~l~~~l~~~tiivs~-~nGi 181 (419)
.+. ..+.|+||+.+= ...-..+++.+.+.+++|.+++.- ..|+
T Consensus 187 ~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 187 MDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred hhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 221 357999999951 256778899999999998777644 3443
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=90.11 E-value=1.1 Score=46.08 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=30.3
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
||.|||.|..|.++|..|.+.| ++|+++|..+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-------~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-------AEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-------CEEEEEeCCCC
Confidence 5899999999999999999999 99999997654
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.77 Score=44.77 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=51.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+||| ...+|.++|..|.+.|. +.+..|++.... |.+++
T Consensus 161 Gk~vvViGrS~iVGkPla~lL~~~~~---~~~atVtv~hs~----------------------------------T~~l~ 203 (297)
T PRK14168 161 GAEVVVVGRSNIVGKPIANMMTQKGP---GANATVTIVHTR----------------------------------SKNLA 203 (297)
T ss_pred CCEEEEECCCCcccHHHHHHHHhccc---CCCCEEEEecCC----------------------------------CcCHH
Confidence 36899999 68899999999998730 000567765321 23455
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+.++.||+||.|+.-..+ +. ..++++|++||++
T Consensus 204 ~~~~~ADIvVsAvGkp~~---i~--~~~ik~gavVIDv 236 (297)
T PRK14168 204 RHCQRADILIVAAGVPNL---VK--PEWIKPGATVIDV 236 (297)
T ss_pred HHHhhCCEEEEecCCcCc---cC--HHHcCCCCEEEec
Confidence 567899999999975443 11 2457889999987
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 419 | ||||
| 1x0x_A | 354 | Co-Structure Of Homo Sapiens Glycerol-3-Phosphate D | 5e-99 | ||
| 1wpq_A | 349 | Ternary Complex Of Glycerol 3-Phosphate Dehydrogena | 3e-98 | ||
| 2pla_A | 349 | Crystal Structure Of Human Glycerol-3-Phosphate Deh | 9e-98 | ||
| 1x0v_A | 354 | Crystal Structure Of Homo Sapien Glycerol-3-Phospha | 3e-96 | ||
| 4fgw_A | 391 | Structure Of Glycerol-3-phosphate Dehydrogenase, Gp | 2e-83 | ||
| 1yj8_A | 375 | Initial Structural Analysis Of Plasmodium Falciparu | 8e-76 | ||
| 3k96_A | 356 | 2.1 Angstrom Resolution Crystal Structure Of Glycer | 1e-26 | ||
| 1z82_A | 335 | Crystal Structure Of Glycerol-3-Phosphate Dehydroge | 4e-24 | ||
| 1evy_A | 366 | Crystal Structure Of Leishmania Mexicana Glycerol-3 | 1e-19 | ||
| 1txg_A | 335 | Structure Of Glycerol-3-Phosphate Dehydrogenase Fro | 6e-08 |
| >pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate Dehydrogenase 1 Complex With Nad Length = 354 | Back alignment and structure |
|
| >pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1 With Nad And Dihydroxyactone Length = 349 | Back alignment and structure |
|
| >pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate Dehydrogenase 1-Like Protein Length = 349 | Back alignment and structure |
|
| >pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate Dehydrogenase 1 Length = 354 | Back alignment and structure |
|
| >pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1, From Sacharomyces Cerevisiae Length = 391 | Back alignment and structure |
|
| >pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Glycerol-3- Phosphate Dehydrogenase Length = 375 | Back alignment and structure |
|
| >pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella Burnetii Length = 356 | Back alignment and structure |
|
| >pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Tm0378) From Thermotoga Maritima At 2.00 A Resolution Length = 335 | Back alignment and structure |
|
| >pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-phosphate Dehydrogenase Length = 366 | Back alignment and structure |
|
| >pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From Archaeoglobus Fulgidus Length = 335 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 419 | |||
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 1e-173 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 1e-171 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 2e-69 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 4e-65 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 4e-65 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 1e-64 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 5e-20 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 2e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-08 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 2e-07 |
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Length = 354 | Back alignment and structure |
|---|
Score = 488 bits (1258), Expect = e-173
Identities = 182/348 (52%), Positives = 238/348 (68%), Gaps = 5/348 (1%)
Query: 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENV 120
KV +VGSGNWGS +K++ N +L+ F V MWVFEE + G+KLT++IN +ENV
Sbjct: 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDI-GGKKLTEIINTQHENV 66
Query: 121 KYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180
KYLPG KL NVVA PD+ A +DA++L+FV PHQF+ IC +L G + + ISLIKG
Sbjct: 67 KYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKG 126
Query: 181 MEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQL 240
++ G +IS +I E+LG+ VLMGANIA+E+A EKF E T+G +D + +L
Sbjct: 127 VDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKD-PAQGQLLKEL 185
Query: 241 FSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSK 300
TP F +T VQ+V+ VE+CG LKNVVA+ AGF DGL G+NTKAA++R+GL EM AF+K
Sbjct: 186 MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAK 245
Query: 301 LLF-SSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQ 359
L V +TF ESCGVADLITTC GGRNRKVAEAFA+ GK S + LE E+L GQKLQ
Sbjct: 246 LFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFART-GK-SIEQLEKELLNGQKLQ 303
Query: 360 GVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407
G TARE+Y +L H+G ++ FPLF V+++C P + + P
Sbjct: 304 GPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHP 351
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} Length = 375 | Back alignment and structure |
|---|
Score = 483 bits (1245), Expect = e-171
Identities = 137/346 (39%), Positives = 215/346 (62%), Gaps = 6/346 (1%)
Query: 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNEN 119
K++++GSGNW S SK++ +N F +EVRMW+ +E + +GE++ D+IN +EN
Sbjct: 20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFV-NGERMVDIINNKHEN 78
Query: 120 VKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVG----KVNGDVEAI 175
KYL G+ L N+VA DL + + DA++L+F+ P Q++E + + K+ +AI
Sbjct: 79 TKYLKGVPLPHNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAI 138
Query: 176 SLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAE 235
SL KG VK+ + S IS+ L + C L GANIA ++A+E FSEAT+G D ++
Sbjct: 139 SLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAMDVAMENFSEATIGGND-KDSLV 197
Query: 236 KWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREM 295
W ++F PYF + V + VE+CG LKN++ +A GF DGL + N+K+AI+R G+ EM
Sbjct: 198 IWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM 257
Query: 296 RAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQG 355
F K+ F ++ ESCG AD+IT+ L GRN K + F K+ K+++++LE E+L+G
Sbjct: 258 ILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAEFIKSTPKKTWEELENEILKG 317
Query: 356 QKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVE 401
QKLQG T + VY ++ + FPLF +H+I + PS++++
Sbjct: 318 QKLQGTVTLKYVYHMIKEKNMTNEFPLFTVLHKISFENEDPSSLLK 363
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} Length = 356 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 2e-69
Identities = 85/358 (23%), Positives = 163/358 (45%), Gaps = 29/358 (8%)
Query: 47 PSSFSSGSDDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSG 106
+ S+ K + ++G+G+WG+ + ++A +VR+W +E
Sbjct: 15 TENLYFQSNAMEPFKHPIAILGAGSWGTALALVLARK-------GQKVRLWSYES----- 62
Query: 107 EKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVG 166
D + N +YLP + + A DL+ +++ ++ V P + R+
Sbjct: 63 -DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKP 121
Query: 167 KVNGDVEAISLIKGMEVKREGPCMISTLISEQLG-VSCCVLMGANIANEIAVEKFSEATV 225
++ KG+ +G ++ +++ +LG V V+ G ++A E+A + ++
Sbjct: 122 LIDAKTRIAWGTKGLA---KGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSL 178
Query: 226 GYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKA 285
+ + ++ ++ F V D+ GVELCG++KN++AIA G DGL++G+N +A
Sbjct: 179 ASNN-SQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARA 237
Query: 286 AIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKR 343
A++ GL EM + K T G+ DL+ TC RNR+ A + G
Sbjct: 238 ALITRGLTEMGRLVSVF--GGKQETLTGLAGLGDLVLTCTDNQSRNRRFGLALGE--GV- 292
Query: 344 SFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVE 401
+ + + GQ ++G+ +V+ L+ + +E+ PL VH I L P V+
Sbjct: 293 DKKEAQQAI--GQAIEGLYNTDQVHA-LAQKHAIEM-PLTFQVHRILHEDLDPQQAVQ 346
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Length = 335 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 4e-65
Identities = 100/358 (27%), Positives = 168/358 (46%), Gaps = 47/358 (13%)
Query: 53 GSDDGVLHKS----KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEK 108
GSD H + V+G+G+WG+V ++++ N +EV +W + +
Sbjct: 2 GSDKIHHHHHHMEMRFFVLGAGSWGTVFAQMLHEN-------GEEVILWARRK------E 48
Query: 109 LTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKV 168
+ D+IN ++ + Y+ K+ V A DLE +K ++LV P Q++ RL K
Sbjct: 49 IVDLINVSHTS-PYVEESKI--TVRATNDLE-EIKKEDILVIAIPVQYIREHLLRLPVK- 103
Query: 169 NGDVEAISLIKGMEV---KREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATV 225
++L KG+E+ KR +S ++ E LG VL G + A E+A + + T+
Sbjct: 104 --PSMVLNLSKGIEIKTGKR-----VSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTL 156
Query: 226 GYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKA 285
+ +++ + ST YF V +DV GVE+ G LKNV+AIAAG +DG +N KA
Sbjct: 157 AGEN----SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKA 212
Query: 286 AIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKR 343
A+ G+ E+ F TF G+ DL+ TC RNR+ E A+ G
Sbjct: 213 ALETRGIYEIARFGMFF--GADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIAR--GF- 267
Query: 344 SFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVE 401
+ L Q ++G T + V + ++ +++ P+ V+ + PP +
Sbjct: 268 NPLKLLESS--NQVVEGAFTVKAVMK-IAKENKIDM-PISEEVYRVVYEGKPPLQSMR 321
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Length = 335 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 4e-65
Identities = 75/349 (21%), Positives = 133/349 (38%), Gaps = 31/349 (8%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
V+++G+G GS S + N +EVR+W E ++ I+ E+ +
Sbjct: 2 IVSILGAGAMGSALSVPLVDN-------GNEVRIWGTEFD----TEILKSISAGREHPRL 50
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
+ G + LE +++A +++ + + R++ + + + KG+
Sbjct: 51 GVKL-NGVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQY-IVLISKGLI 108
Query: 183 VKREGPCMISTLISEQLGVSCC---VLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQ 239
+ + + G IA E+A + A K +
Sbjct: 109 DFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPS-ESSANKMKE 167
Query: 240 LFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG-----NNTKAAIMRIGLRE 294
+F T YF V D+ G E+ LKNV +IA ++ G E +N K I + E
Sbjct: 168 IFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINE 227
Query: 295 MRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQ 354
M ++L T F G DLI T GGRN + E K G S D+ E+ +
Sbjct: 228 MAELIEIL--GGDRETAFGLSGFGDLIATFRGGRNGMLGELLGK--GL-SIDEAMEELER 282
Query: 355 GQKL--QGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVE 401
+G TA + Y LS + + L +++ + L ++
Sbjct: 283 RGVGVVEGYKTAEKAYR-LSSKINADT-KLLDSIYRVLYEGLKVEEVLF 329
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Length = 366 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 1e-64
Identities = 94/364 (25%), Positives = 164/364 (45%), Gaps = 35/364 (9%)
Query: 48 SSFSSGSDDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGE 107
S+ + D +L+ +K V GSG +G+ + +++ + V +W E
Sbjct: 2 STKQHSAKDELLYLNKAVVFGSGAFGTALAMVLSKKC------RE-VCVWHMNE------ 48
Query: 108 KLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGK 167
+ ++N ENV +L G++L N+ D+E A A +++FV P QF+ G ++ G
Sbjct: 49 EEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGN 108
Query: 168 VNGDVEA-----ISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEKFS 221
+ + + KG+E R + +I E L VL G + A E+A F+
Sbjct: 109 LIAYAKEKQVPVLVCTKGIE--RSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFT 166
Query: 222 EATVGYRDNREIAEKWVQLFST--PYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEM 279
++ D +A + ++ ST F+ A D G E+ +KNV+AI +G +GL M
Sbjct: 167 CVSIASAD-INVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGM 225
Query: 280 GNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGG--RNRKVAEAFA 337
G N +AA++ GL E+R + L S F G+ DL TC RN V +
Sbjct: 226 GLNARAALIMRGLLEIRDLTAAL--GGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLG 283
Query: 338 KNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPS 397
K G ++++ +GV+TA + L+ + +++ PL ++EI P
Sbjct: 284 K--GL-PIEEIQRTS--KAVAEGVATADPLMR-LAKQLKVKM-PLCHQIYEIVYKKKNPR 336
Query: 398 AIVE 401
+
Sbjct: 337 DALA 340
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Length = 359 | Back alignment and structure |
|---|
Score = 89.7 bits (222), Expect = 5e-20
Identities = 49/304 (16%), Positives = 86/304 (28%), Gaps = 45/304 (14%)
Query: 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENV 120
V+G GN G + +A V W + + I +
Sbjct: 4 SKTYAVLGLGNGGHAFAAYLALK-------GQSVLAWDID------AQRIKEIQDRGAII 50
Query: 121 KYLPGIKLGKNV-VADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179
PG+ + + D+ AVKDA++++ V P I + ++ I L
Sbjct: 51 AEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQ-LIILNP 109
Query: 180 GMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNR-------- 231
G G ++ E + +++ E+ + TV
Sbjct: 110 GAT---GGALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPA 166
Query: 232 EIAEKWVQLFSTPYFMVTAVQDVEGVEL---------CGTLKNVVAIAAG--FVDGLEMG 280
A ++ + AV++V L TL N +G F LE
Sbjct: 167 AKAGWALEQIGSVLPQYVAVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGI 226
Query: 281 NNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNE 340
+ ++ E A +K V + G + EA N
Sbjct: 227 TPSVGSLAEKVDAERIAIAKAF--------DLNVPSVCEWYKESYGQSPATIYEAVQGNP 278
Query: 341 GKRS 344
R
Sbjct: 279 AYRG 282
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 2e-10
Identities = 42/322 (13%), Positives = 89/322 (27%), Gaps = 41/322 (12%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
KV V G GN S L AS EVR+ + + +
Sbjct: 4 KVCVCGGGNGAHTLSGLAASRD------GVEVRVLTLFADEA------ERWTKALGADEL 51
Query: 123 LPGIKL---------GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVE 173
+ + V D E A+ A++++ P EG + + V
Sbjct: 52 TVIVNEKDGTQTEVKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSA- 110
Query: 174 AISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREI 233
I + + G I + ++ + +++F +
Sbjct: 111 LIVGLPS----QAGFEFQCRDILGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVL 166
Query: 234 AEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293
A ++ + ++ +Q + G E L + R G
Sbjct: 167 AASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMSYSF---VHPAILFGRWGSW 223
Query: 294 EMRAFSKLLFSSVKDSTFFESC--GVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLE-- 349
+ + + F++ AD++ T + VA A D++
Sbjct: 224 DGKPVPEAPL-------FYQGIDQATADML-TACSNECKDVANAIMAACPGNDLSDVKDI 275
Query: 350 AEMLQGQKLQGVSTAREVYEVL 371
+ + + ++Y +
Sbjct: 276 YQWYLEYYHEDIQDDHDLYHAI 297
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 8e-08
Identities = 46/329 (13%), Positives = 100/329 (30%), Gaps = 118/329 (35%)
Query: 130 KNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS---LIKGMEVKRE 186
+++ D + +F T E + ++ V +V I+ L+ ++ ++
Sbjct: 52 DHIIMSKDAVSGTL----RLFWTLLSKQEEMVQKFVE----EVLRINYKFLMSPIKTEQR 103
Query: 187 GPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNR-----EIAEKWVQLF 241
P M++ + EQ + N+ + F++ V +R ++ + ++L
Sbjct: 104 QPSMMTRMYIEQRD---------RLYND--NQVFAKYNV----SRLQPYLKLRQALLELR 148
Query: 242 STPYFMVTAVQDVEGVELCGTLKNVVAIAA--------GFVDG---LEMGN-NTKAAIM- 288
V ++GV G K VA+ L + N N+ ++
Sbjct: 149 PAKN--VL----IDGVLGSG--KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 289 -----------------------RIGLREMRAFSKLLFSS------------VKDSTFFE 313
++ + ++A + L S V+++ +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 314 ----SCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYE 369
SC + L+TT R ++V + + D + L T EV
Sbjct: 261 AFNLSCKI--LLTT----RFKQVTDFLSAATTTHISLDHHSMTL---------TPDEVKS 305
Query: 370 VLSHRGWLELFPLFATVHEICVGHLPPSA 398
L + LP
Sbjct: 306 ------------LLLKYLDCRPQDLPREV 322
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-07
Identities = 29/233 (12%), Positives = 56/233 (24%), Gaps = 40/233 (17%)
Query: 63 KVTVVGSGNWGS-VASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVK 121
K+ V+G+G G +A L H EV + +
Sbjct: 21 KIAVLGTGTVGRTMAGALADLG-------H-EVTIGTR-----DPKATLARAEPDAMGAP 67
Query: 122 YLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181
V + A ++V T + + + +
Sbjct: 68 PFSQWLPEHPHVHLAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPL 127
Query: 182 EVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLF 241
+ P ++ + ++ S + V+ N A V
Sbjct: 128 DFSHGMPPTLNPVNTD----SLGEQIQRTFPEAKVVKTL---------NTMNASLMVDP- 173
Query: 242 STPYFMVTAVQDVEGVELCGT----LKNVVAIA--AGFVDGLEMGNNTKAAIM 288
A V + G V + G D +++G+ T A
Sbjct: 174 ------GRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGA 220
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 419 | |||
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 100.0 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 100.0 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 100.0 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 100.0 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 100.0 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 100.0 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 100.0 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 100.0 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 100.0 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 100.0 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.97 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.96 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.96 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.95 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.94 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.93 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.93 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.92 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.92 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.92 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.91 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.91 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.91 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.91 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.9 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.9 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.9 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.89 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.88 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.88 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.88 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.87 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.87 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.87 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.87 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.87 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.86 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.84 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.84 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.84 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.84 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.83 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.82 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.81 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.81 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.8 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.79 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.79 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.78 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.78 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.78 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.77 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.77 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.77 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.76 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.76 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.75 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.73 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.71 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.7 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.69 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.67 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.66 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.66 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.65 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.65 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.64 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.63 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.6 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.6 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.57 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.57 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.54 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.52 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.52 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.5 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.5 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.47 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.45 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.16 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.4 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.39 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.34 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.33 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.3 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.28 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.21 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.15 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.07 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 99.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.9 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.89 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.83 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.82 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.77 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.77 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.76 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.74 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.71 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.71 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.7 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.7 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.68 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.67 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.67 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.66 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.66 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.64 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.63 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.63 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.62 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.61 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.6 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.6 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.59 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.57 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.56 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.56 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.56 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.54 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.54 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.54 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.53 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.52 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.52 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.52 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.51 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.47 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.47 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.47 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.46 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.46 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.45 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.45 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.44 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.42 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.4 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.39 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.39 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.39 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.37 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.36 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.35 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.34 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.34 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.34 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.33 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.33 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.29 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.28 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.26 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.25 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.25 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.24 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.23 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.22 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.21 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.21 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.2 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.2 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.2 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.19 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.19 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.18 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.17 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.17 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.16 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.15 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.15 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.15 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.15 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.14 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.13 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.13 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.1 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.07 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.06 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.04 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.04 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.01 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.0 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.0 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.99 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.98 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.98 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.98 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.96 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.96 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.93 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.92 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.92 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.91 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.88 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.88 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.87 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.87 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.87 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.86 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.86 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.86 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.83 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.8 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.79 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.78 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.78 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.77 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.76 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.75 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.75 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.73 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.72 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.72 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.71 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.67 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.67 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.64 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.64 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.63 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.63 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.62 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.61 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.61 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.61 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.58 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.57 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.5 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.5 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.5 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.46 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.46 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.45 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.42 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.42 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.42 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.42 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.41 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.41 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.39 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.39 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.37 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.36 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.35 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.34 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.32 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.32 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.31 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.3 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.29 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.29 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.28 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.28 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.27 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.27 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.25 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.25 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.25 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.24 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.24 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.24 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.23 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.18 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.18 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.17 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.17 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.17 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.16 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.15 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.14 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.13 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.09 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.08 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.07 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.07 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.04 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.03 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.03 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.02 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.97 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 96.88 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.87 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.87 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 96.86 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 96.86 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.85 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.82 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.77 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 96.77 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.74 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.73 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.72 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.71 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.7 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.7 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.7 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.7 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 96.67 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.64 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.59 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.59 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 96.59 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 96.58 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.58 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.58 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.55 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.55 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.55 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.54 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.53 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.52 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.52 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.49 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.49 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.49 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.48 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.48 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 96.47 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 96.43 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.42 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 96.41 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 96.4 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.39 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.38 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.38 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.35 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.33 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.33 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.29 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.28 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.27 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.25 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.24 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.23 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.19 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.15 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 96.15 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.12 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.12 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.1 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.07 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.03 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.03 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.0 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.0 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.99 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.99 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.98 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.98 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.98 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.96 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.93 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.92 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.9 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 95.9 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 95.89 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.88 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.88 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.83 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 95.74 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.71 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 95.67 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 95.66 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.65 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 95.65 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 95.61 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 95.61 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.51 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.51 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 95.47 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.47 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.39 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 95.19 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 95.16 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.16 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.15 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.05 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 95.04 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.02 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 94.97 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 94.89 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 94.86 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.85 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 94.84 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 94.82 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 94.81 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 94.77 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 94.73 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 94.72 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 94.66 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 94.66 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 94.62 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.55 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 94.52 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 94.52 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 94.48 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 94.47 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 94.44 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.41 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 94.39 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 94.34 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 94.33 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 94.3 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 94.29 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 94.29 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.2 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 94.18 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 94.12 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 94.11 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 94.1 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 94.02 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 94.0 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.98 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.96 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 93.95 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 93.93 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.9 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 93.88 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 93.84 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 93.75 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 93.73 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 93.71 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 93.71 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 93.7 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 93.66 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 93.61 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 93.57 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 93.49 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 93.43 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 93.43 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 93.42 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 93.32 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 93.3 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 93.27 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 93.23 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 93.22 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 93.22 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 93.18 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 93.12 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 93.1 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 92.96 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 92.94 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 92.93 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 92.93 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 92.9 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 92.89 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 92.88 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 92.86 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 92.86 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.83 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 92.82 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 92.78 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 92.65 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 92.62 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 92.62 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 92.57 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 92.53 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 92.52 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 92.5 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 92.48 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 92.47 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 92.46 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 92.39 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.31 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 92.27 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.24 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 92.22 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 92.17 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 92.16 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 92.14 | |
| 2nvu_B | 805 | Maltose binding protein/NEDD8-activating enzyme E1 | 92.11 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.1 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 92.1 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 92.1 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 92.1 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 92.1 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.1 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 92.04 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 91.92 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 91.9 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 91.9 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 91.9 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 91.84 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 91.83 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 91.8 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 91.8 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 91.77 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 91.76 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 91.75 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 91.72 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 91.7 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 91.68 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 91.64 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 91.61 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 91.51 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 91.49 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 91.45 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 91.4 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 91.38 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 91.38 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 91.37 |
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-55 Score=436.56 Aligned_cols=346 Identities=47% Similarity=0.771 Sum_probs=303.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCC-CCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSS-FHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~-~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
..+..||+|||+|+||+++|..|+++|+..+. +.++|++|.|+++. ..+.+++.|+..+.|++|+|++++|+++++++
T Consensus 31 ~~~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~-~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~ 109 (391)
T 4fgw_A 31 AEKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEI-NGEKLTEIINTRHQNVKYLPGITLPDNLVANP 109 (391)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBS-SSCBHHHHHTTTCCBTTTBTTCCCCSSEEEES
T ss_pred cCCCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHh-hhHHHHHHHHhcCcCcccCCCCcCCCCcEEeC
Confidence 34456999999999999999999999821000 00259999999864 34566889999999999999999999999999
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHH
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIA 216 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~ 216 (419)
|+++++.++|+||++||++.++++++++.+++++++++|+++||+...+.....+++++.+.++.++.+++||++|.|++
T Consensus 110 dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~~~~vLsGPs~A~EVa 189 (391)
T 4fgw_A 110 DLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGIQCGALSGANIATEVA 189 (391)
T ss_dssp CHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCCEEEEEECSCCHHHHH
T ss_pred CHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCccceeccCCchHHHhh
Confidence 99999999999999999999999999999999999999999999986543346789999988888899999999999999
Q ss_pred hcCceeEEEeecC--------CHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHH
Q 014757 217 VEKFSEATVGYRD--------NREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIM 288 (419)
Q Consensus 217 ~g~~~~~~~~~~~--------~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~ 288 (419)
.+.|+.+++++.. ++...+.++++|.+.+|+++.++|+.|+|+++++||++|+++|+++++++|+|+.++++
T Consensus 190 ~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAALi 269 (391)
T 4fgw_A 190 QEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQ 269 (391)
T ss_dssp TTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 9999999998751 11235779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-CCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHH
Q 014757 289 RIGLREMRAFSKLLFS-SVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREV 367 (419)
Q Consensus 289 ~~~~~E~~~la~a~g~-g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v 367 (419)
+++++||.+++++++. |.++.+|.+++|+||+++||++|||+++|..++++| ++++++++.+.+|+++||.++.+.+
T Consensus 270 trGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~sSRNr~~G~~lg~~G--~~~~~~~~~~~~g~v~EGv~ta~~v 347 (391)
T 4fgw_A 270 RVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAGGRNVKVARLMATSG--KDAWECEKELLNGQSAQGLITCKEV 347 (391)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHSSHHHHHHHHHHHTC--CCHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecCCccHHHHHHHHhcC--CCHHHHHHHHhCCCEEehHHHHHHH
Confidence 9999999999999943 334545778999999999999999999999999635 6788888887789999999999999
Q ss_pred HHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 368 YEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 368 ~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
+++++++|+..++|+++.+|++++++++|+++.+.+++.
T Consensus 348 ~~l~~~~~v~~emPI~~~vy~IL~~~~~~~~~~~~l~~~ 386 (391)
T 4fgw_A 348 HEWLETCGSVEDFPLFEAVYQIVYNNYPMKNLPDMIEEL 386 (391)
T ss_dssp HHHHHHHTCSTTCHHHHHHHHHHHSCCCSTTHHHHHCC-
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 999999998557999999999999999999999988763
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-52 Score=414.04 Aligned_cols=323 Identities=25% Similarity=0.460 Sum_probs=301.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+|||+|||+|+||+++|..|+++| ++|++|+|+++. ++.+++.+.+..|+|+..++.++++++|++
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~G-------~~V~l~~r~~~~------~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ 94 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARKG-------QKVRLWSYESDH------VDEMQAEGVNNRYLPNYPFPETLKAYCDLK 94 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTTT-------CCEEEECSCHHH------HHHHHHHSSBTTTBTTCCCCTTEEEESCHH
T ss_pred cCCeEEEECccHHHHHHHHHHHHCC-------CeEEEEeCCHHH------HHHHHHcCCCcccCCCCccCCCeEEECCHH
Confidence 3589999999999999999999999 999999998766 788998888888999999998999999998
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC-CceEEEeCcchHHHHHhc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG-VSCCVLMGANIANEIAVE 218 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g-~~~~v~~gp~~a~e~~~g 218 (419)
+++.++|+||+|||+++++++++++.+.++++++||+++||+.++ + ..+++.+.+.+| .++.+++||+++.++..+
T Consensus 95 ea~~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~--t-~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g 171 (356)
T 3k96_A 95 ASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKG--S-RLLHEVVATELGQVPMAVISGPSLATEVAAN 171 (356)
T ss_dssp HHHTTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTT--T-BCHHHHHHHHHCSCCEEEEESSCCHHHHHTT
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcC--c-cCHHHHHHHHcCCCCEEEEECccHHHHHHcC
Confidence 889999999999999999999999999999999999999999874 4 778889988886 467899999999999999
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Q 014757 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
.++.+++++. +.+..++++++|++.+++++.++|+.+++|++++||+++++.|+++++++++|...+++.++++|+.++
T Consensus 172 ~pt~~via~~-~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l 250 (356)
T 3k96_A 172 LPTAVSLASN-NSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRL 250 (356)
T ss_dssp CCEEEEEEES-CHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecC-CHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHH
Confidence 9998889887 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCC
Q 014757 299 SKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGW 376 (419)
Q Consensus 299 a~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv 376 (419)
++++| +++++|.+++|++|++.||++ +||+++|..+++ | ++++++++.+ |++.||.++++.++++++++|+
T Consensus 251 ~~a~G--~~~~t~~gl~g~gDl~~tc~s~~sRN~~~G~~l~~-g--~~~~~~~~~~--~~~~eG~~t~~~~~~la~~~~v 323 (356)
T 3k96_A 251 VSVFG--GKQETLTGLAGLGDLVLTCTDNQSRNRRFGLALGE-G--VDKKEAQQAI--GQAIEGLYNTDQVHALAQKHAI 323 (356)
T ss_dssp HHHTT--CCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHH-T--CCHHHHHHHH--CSCCSHHHHHHHHHHHHHHTTC
T ss_pred HHHhC--CChHhhcccchhhHHHHhccCCCCccHHHHHHHHC-C--CCHHHHHHHc--CCccchHHHHHHHHHHHHHcCC
Confidence 99995 899999999999999999998 999999999998 7 6888887775 8999999999999999999999
Q ss_pred CcCCcHHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 014757 377 LELFPLFATVHEICVGHLPPSAIVEYSERKPR 408 (419)
Q Consensus 377 ~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (419)
++|+++.+|++++++++|.+.++.|..++.
T Consensus 324 --~~Pi~~~v~~il~~~~~~~~~~~~l~~r~~ 353 (356)
T 3k96_A 324 --EMPLTFQVHRILHEDLDPQQAVQELLERSP 353 (356)
T ss_dssp --CCHHHHHHHHHHHSCCCHHHHHHHHHSCC-
T ss_pred --CCcHHHHHHHHHhCCCCHHHHHHHHHcCCC
Confidence 999999999999999999999999987543
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=352.72 Aligned_cols=346 Identities=39% Similarity=0.731 Sum_probs=294.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|+||+++|..|+++|...+.+.++|++|+|+++. +.++..+.+++.+.+..++++..++.++.+++++++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e 99 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFV-NGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS 99 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC----CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhh-hhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence 5799999999999999999999872111122589999999871 111126888887777777777777778888888888
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhc----cCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHH
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVG----KVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIA 216 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~----~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~ 216 (419)
++.++|+||+|||+++++++++++.+ .++++++||+++||+++++.+...+++.+.+.+|.++.++.||+++.++.
T Consensus 100 a~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~v~ 179 (375)
T 1yj8_A 100 VINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAMDVA 179 (375)
T ss_dssp HHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCHHHHH
T ss_pred HHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchHHHHH
Confidence 88899999999999999999999998 89999999999999986212235677888776665578899999999888
Q ss_pred hcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHH
Q 014757 217 VEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMR 296 (419)
Q Consensus 217 ~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~ 296 (419)
.|.+..+++++. +.+..++++++|+..+++++.++|+.+++|+++++|+++++.|+..++++++|...+++.++++|+.
T Consensus 180 ~g~~~~~~~~~~-~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~~ 258 (375)
T 1yj8_A 180 MENFSEATIGGN-DKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEMI 258 (375)
T ss_dssp TTCCEEEEEECS-CHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEecC-CHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Confidence 888777777776 7889999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCC
Q 014757 297 AFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGW 376 (419)
Q Consensus 297 ~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv 376 (419)
+++++.|+|++++++.++++++|++.||.++||+.+|..+++.+++++++++++.+.+|+.+|++++++.++++|+++|+
T Consensus 259 ~la~a~G~G~~~~~~~~~~g~~dl~~t~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~~a~~~gv 338 (375)
T 1yj8_A 259 LFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKEKNM 338 (375)
T ss_dssp HHHHHHSSCCCGGGGGSTTTHHHHHHHHSSSSHHHHHHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCCcchhhccccccceeEeeeCCccHHHHHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHHHHHHhCC
Confidence 99999965588999999999999999999889998898887522113578887766679999999999999999999997
Q ss_pred CcCCcHHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 014757 377 LELFPLFATVHEICVGHLPPSAIVEYSERKPR 408 (419)
Q Consensus 377 ~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (419)
..++|+++++|++++++++|.++++.|..++.
T Consensus 339 ~~~~P~~~~v~~~~~~~~~~~~~~~~l~~~~~ 370 (375)
T 1yj8_A 339 TNEFPLFTVLHKISFENEDPSSLLKTFMNNKI 370 (375)
T ss_dssp GGGCHHHHHHHHHHHSCCCTTHHHHHHSSCCC
T ss_pred CCCCCHHHHHHHHHhCCCCHHHHHHHHHcCcH
Confidence 55899999999999999999999999987643
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=341.20 Aligned_cols=345 Identities=52% Similarity=0.887 Sum_probs=289.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|.+|||+|||+|+||+++|..|+++|...+.+.++|++|+|+++. ..++..+.+++.+.+..+.++..++.++.+++++
T Consensus 6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (354)
T 1x0v_A 6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDI-GGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDV 84 (354)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBS-SSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSH
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhh-hhhHHHHHHHhcCcccccCCcccCccCeEEEcCH
Confidence 446799999999999999999999871000011589999998862 1111267787766666666666666678888888
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVE 218 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g 218 (419)
++++.++|+||+|||+++++++++++.+.++++++||+++||+.+++.+...+++.+.+.+|.++.++.||+++.++..+
T Consensus 85 ~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~v~~g 164 (354)
T 1x0v_A 85 VQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADE 164 (354)
T ss_dssp HHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEEECSCCHHHHHTT
T ss_pred HHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEEECCCcHHHHHhc
Confidence 88888999999999999999999999999999999999999998532234567777777667557889999999988888
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Q 014757 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
.++.+++++. +.+..++++++|+..+++++.++|+.+.+|.|+++|+++++.|+..+.++++|...+++..+++|+.++
T Consensus 165 ~~~~~~~~~~-~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~~l 243 (354)
T 1x0v_A 165 KFCETTIGCK-DPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAF 243 (354)
T ss_dssp CCEEEEEECS-SHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEC-CHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 7777777766 788999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHhcCCC-CccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCC
Q 014757 299 SKLLFSSV-KDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWL 377 (419)
Q Consensus 299 a~a~g~g~-~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~ 377 (419)
+++.|.+. +++++.++++++|++.+|.+++|++++..+.+.+ ++++++++.+.+|+.+|++++++.++++|+++|++
T Consensus 244 a~a~G~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~~~gv~ 321 (354)
T 1x0v_A 244 AKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTG--KSIEQLEKELLNGQKLQGPETARELYSILQHKGLV 321 (354)
T ss_dssp HHHHSSSCCCGGGGGSTTTHHHHHHHHHHCHHHHHHHHHHHHC--CCHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHhcCCCCCcccccccchHHHHHHhhcccccHHHHHHHHhcC--CCHHHHHHhhcCCcEeehHHHHHHHHHHHHHhCCC
Confidence 99996222 8899999999999999988788888888887523 56888877666799999999999999999999975
Q ss_pred cCCcHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 014757 378 ELFPLFATVHEICVGHLPPSAIVEYSERKP 407 (419)
Q Consensus 378 ~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (419)
.++|+++++|++++++++|.++++.|.+++
T Consensus 322 ~~~P~~~~v~~~~~~~~~~~~~~~~l~~~~ 351 (354)
T 1x0v_A 322 DKFPLFMAVYKVCYEGQPVGEFIHCLQNHP 351 (354)
T ss_dssp GGSHHHHHHHHHHHSCCCGGGTHHHHHTCC
T ss_pred CCCCHHHHHHHHHhCCCCHHHHHHHHHcCC
Confidence 589999999999999999999999987653
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=320.67 Aligned_cols=313 Identities=30% Similarity=0.470 Sum_probs=268.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.|||+|||+|+||++||..|+++| ++|++|+|++++ ++.+++.|.+. ++++..+ ++++++++++
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G-------~~V~~~~r~~~~------~~~l~~~g~~~-~~~~~~~--~~~~~~~~~~ 77 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENG-------EEVILWARRKEI------VDLINVSHTSP-YVEESKI--TVRATNDLEE 77 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSHHH------HHHHHHHSCBT-TBTTCCC--CSEEESCGGG
T ss_pred CCcEEEECcCHHHHHHHHHHHhCC-------CeEEEEeCCHHH------HHHHHHhCCcc-cCCCCee--eEEEeCCHHH
Confidence 379999999999999999999999 999999998766 68888877665 5555544 4677788888
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCc
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKF 220 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~ 220 (419)
+.++|+||+|||+++++++++++.+ ++++||+++||++++ +.+.+++.+.+.++....++.+|+++.++..|.+
T Consensus 78 -~~~aDvVil~vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~--~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~ 151 (335)
T 1z82_A 78 -IKKEDILVIAIPVQYIREHLLRLPV---KPSMVLNLSKGIEIK--TGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLP 151 (335)
T ss_dssp -CCTTEEEEECSCGGGHHHHHTTCSS---CCSEEEECCCCCCTT--TCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCC
T ss_pred -hcCCCEEEEECCHHHHHHHHHHhCc---CCCEEEEEeCCCCCC--ccCcHHHHHHHHcCCceEEEECCccHHHHhCCCc
Confidence 8899999999999999999988766 789999999999864 2456777777665534688999999998888887
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHH
Q 014757 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSK 300 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~ 300 (419)
+.+++++. + .++++++|+..++++++++|+.+.+|.|+++|+++++.|...++++++|...+++..++.|+.++++
T Consensus 152 ~~~~~g~~-~---~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~ 227 (335)
T 1z82_A 152 TAVTLAGE-N---SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGM 227 (335)
T ss_dssp EEEEEEET-T---HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeh-h---HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 76677655 4 7889999999999999999999999999999999999999888999999888999999999999999
Q ss_pred HhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCc
Q 014757 301 LLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLE 378 (419)
Q Consensus 301 a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~ 378 (419)
+.| ++++++.++++++|...+|.+ ++|+.+++++.+ | ++++++++. .|+++|+.++++.++++|+++|+
T Consensus 228 a~G--~~~~~~~~l~~~~~~~~t~~s~~~~n~~~~~~~~~-g--~~~~~~~~~--~g~~~e~~~~~~~v~~~a~~~gv-- 298 (335)
T 1z82_A 228 FFG--ADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIAR-G--FNPLKLLES--SNQVVEGAFTVKAVMKIAKENKI-- 298 (335)
T ss_dssp HTT--CCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHH-T--CCHHHHHHT--CSSCCTHHHHHHHHHHHHHHTTC--
T ss_pred HhC--CChhhhcccccccceeeeccCccCcHHHHHHHHhC-C--CCHHHHHHh--cCCeeeHHHHHHHHHHHHHHhCC--
Confidence 995 888888888778887777765 678888888887 6 567777553 38899999999999999999999
Q ss_pred CCcHHHHHHHHHhCCCCHHHHHHHHhcCCc
Q 014757 379 LFPLFATVHEICVGHLPPSAIVEYSERKPR 408 (419)
Q Consensus 379 ~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (419)
++|++++++++++.++++.++++.|.+++.
T Consensus 299 ~~P~~~~v~~~~~~~~~~~~~~~~l~~~~~ 328 (335)
T 1z82_A 299 DMPISEEVYRVVYEGKPPLQSMRDLMRRSL 328 (335)
T ss_dssp CCHHHHHHHHHHHSCCCHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHhCCCCHHHHHHHHHcCCc
Confidence 999999999999999999999999986443
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=324.29 Aligned_cols=323 Identities=28% Similarity=0.436 Sum_probs=276.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|.||||+|||+|+||+++|..|+++| ++|++|+|++++ ++.+++.+.+..+.++..++.++.+++++
T Consensus 13 m~M~kI~iIG~G~mG~~la~~L~~~G-------~~V~~~~r~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (366)
T 1evy_A 13 LYLNKAVVFGSGAFGTALAMVLSKKC-------REVCVWHMNEEE------VRLVNEKRENVLFLKGVQLASNITFTSDV 79 (366)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHTTTE-------EEEEEECSCHHH------HHHHHHHTBCTTTSTTCBCCTTEEEESCH
T ss_pred hccCeEEEECCCHHHHHHHHHHHhCC-------CEEEEEECCHHH------HHHHHHcCcccccccccccccceeeeCCH
Confidence 33449999999999999999999999 999999998765 67787777666666666666678888888
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHH----HhccCCC-CcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchH
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKR----LVGKVNG-DVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIA 212 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~----l~~~l~~-~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a 212 (419)
++++.++|+||+|||++++++++++ +.+.+++ +++||+++||++++ +...+.+.+.+.+|. ++.++.||+++
T Consensus 80 ~~~~~~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~--~~~~~~~~l~~~~~~~~~~v~~gp~~~ 157 (366)
T 1evy_A 80 EKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERS--TLKFPAEIIGEFLPSPLLSVLAGPSFA 157 (366)
T ss_dssp HHHHTTCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTT--TCCCHHHHHTTTSCGGGEEEEESSCCH
T ss_pred HHHHcCCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCc--cccCHHHHHHHHCCCCcEEEEeCCChH
Confidence 8888899999999999999999998 9888888 99999999999864 235666777665553 46889999999
Q ss_pred HHHHhcCceeEEEeecCCHHHHHHHHHHhCCC--CcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHH
Q 014757 213 NEIAVEKFSEATVGYRDNREIAEKWVQLFSTP--YFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRI 290 (419)
Q Consensus 213 ~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~--g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~ 290 (419)
.++..+.++.+++++. +.+..++++++|+.. +++++.++|+.+.+|.++++|+++++.|...+.++++|....++..
T Consensus 158 ~~~~~g~~~~~~~~~~-~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~ 236 (366)
T 1evy_A 158 IEVATGVFTCVSIASA-DINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMR 236 (366)
T ss_dssp HHHHTTCCEEEEEECS-SHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhCCceEEEEecC-CHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHH
Confidence 9888887776777766 788899999999999 9999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHH
Q 014757 291 GLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVY 368 (419)
Q Consensus 291 ~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~ 368 (419)
+++|+.+++++.| ++++++.+..+++|.+.+|.+ ++|+.++.++.+ | ++++++++. .++.+|+.++++.++
T Consensus 237 ~~~E~~~la~a~G--i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-g--~~~~~~~~~--~~~~~e~~~~~~~v~ 309 (366)
T 1evy_A 237 GLLEIRDLTAALG--GDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGK-G--LPIEEIQRT--SKAVAEGVATADPLM 309 (366)
T ss_dssp HHHHHHHHHHHTT--CCCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHT-T--CCHHHHHC-----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCccccccccchhheeeecCCCCchHHHHHHHhC-C--CCHHHHHHH--cCCeeehHHHHHHHH
Confidence 9999999999995 788888887778887777765 578888888887 6 567776543 367889999999999
Q ss_pred HHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 369 EVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 369 ~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
++|+++|+ ++|+++.+|++++++.+|+++++.|.++
T Consensus 310 ~~a~~~gv--~~P~~~~v~~~~~~~~~~~~~~~~l~~~ 345 (366)
T 1evy_A 310 RLAKQLKV--KMPLCHQIYEIVYKKKNPRDALADLLSC 345 (366)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHSCCCHHHHHHHHGGG
T ss_pred HHHHHhCC--CCcHHHHHHHHHHCCCCHHHHHHHHHcC
Confidence 99999999 9999999999999999999999998764
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=296.57 Aligned_cols=316 Identities=24% Similarity=0.334 Sum_probs=259.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEec--CCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC--C
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVF--EETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP--D 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r--~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~--~ 137 (419)
|||+|||+|+||+++|..|+++| ++|++|+| ++++ .+.+++.+.+..+ +..+ .++.+++ +
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g-------~~V~~~~r~~~~~~------~~~~~~~~~~~~~--g~~~-~~~~~~~~~~ 64 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNG-------NEVRIWGTEFDTEI------LKSISAGREHPRL--GVKL-NGVEIFWPEQ 64 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHC-------CEEEEECCGGGHHH------HHHHHTTCCBTTT--TBCC-CSEEEECGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-------CeEEEEEccCCHHH------HHHHHHhCcCccc--Cccc-cceEEecHHh
Confidence 68999999999999999999999 99999999 7655 6777776654332 2222 3455666 7
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc---ccCCCCcccHHHHHHhHhCC--ceEEEeCcchH
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM---EVKREGPCMISTLISEQLGV--SCCVLMGANIA 212 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi---~~~~~~~~~~~~~i~~~~g~--~~~v~~gp~~a 212 (419)
+++++.++|+||+|||+++++++++++.+ ++++++||+++||+ .+. +...+.+.+.+.+|. +..+..+|+.+
T Consensus 65 ~~~~~~~~D~vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~p~~~ 141 (335)
T 1txg_A 65 LEKCLENAEVVLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNS--VLTVPEAVWRLKHDLRERTVAITGPAIA 141 (335)
T ss_dssp HHHHHTTCSEEEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTE--EEEHHHHHHTTSTTCGGGEEEEESSCCH
T ss_pred HHHHHhcCCEEEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCC--cCccHHHHHHHhcCCCCcEEEEECCCcH
Confidence 77778899999999999999999999999 98999999999998 421 234555666543343 46788999999
Q ss_pred HHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC-----ccHHHHH
Q 014757 213 NEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG-----NNTKAAI 287 (419)
Q Consensus 213 ~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~-----~n~~~~l 287 (419)
.+...+.++.+++++. +.+..++++++|+..|++++..+|+.+.+|.|+++|+++++.|...+++++ +|....+
T Consensus 142 ~~~~~g~~~~~~~~~~-~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~ 220 (335)
T 1txg_A 142 REVAKRMPTTVVFSSP-SESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVI 220 (335)
T ss_dssp HHHHTTCCEEEEEECS-CHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHccCCcEEEEEeC-CHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence 8887777666777776 788899999999999999999999999999999999998888887777766 7887889
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCH-HHHHHHHhc--C-CeeehHHH
Q 014757 288 MRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSF-DDLEAEMLQ--G-QKLQGVST 363 (419)
Q Consensus 288 ~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~-~~~~~~~~~--g-~~~Eg~~~ 363 (419)
+..+++|+.++++++| ++++++.+..+++|.+.++.+++|+.++..++. + ++. +++++ + . | +.+|++++
T Consensus 221 ~~~~~~E~~~la~~~G--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~s~~~d~~~-~-~~~~~~~~E~~~~ 293 (335)
T 1txg_A 221 ATRAINEMAELIEILG--GDRETAFGLSGFGDLIATFRGGRNGMLGELLGK-G--LSIDEAMEE-L-ERRGVGVVEGYKT 293 (335)
T ss_dssp HHHHHHHHHHHHHHHT--SCGGGGGSTTTHHHHHHTTTCHHHHHHHHHHHT-T--CCHHHHHHH-H-HHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCcchhhcccchhheeeccccCccHHHHHHHhC-C--CCHHHHHHH-h-ccCCceecchHHH
Confidence 9999999999999995 888888887778888877766677777887776 5 453 34322 1 1 2 88999999
Q ss_pred HHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 364 AREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 364 ~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
++.++++|+++|+ ++|+++.+|++++.+++|++.++.|.++
T Consensus 294 ~~~~~~~a~~~gv--~~P~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (335)
T 1txg_A 294 AEKAYRLSSKINA--DTKLLDSIYRVLYEGLKVEEVLFELATF 334 (335)
T ss_dssp HHHHHHHHHHTTC--CCHHHHHHHHHHHSCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC--CCcHHHHHHHHHhCCCCHHHHHHHHHcC
Confidence 9999999999999 9999999999999999999999988754
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=271.61 Aligned_cols=283 Identities=16% Similarity=0.168 Sum_probs=217.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
...+|||+|||+|+||+++|..|+++| ++|++| ++++. .+.+++.|.+.. .++..++.++.++++
T Consensus 16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G-------~~V~l~-~~~~~------~~~i~~~g~~~~-~~~~~~~~~~~~~~~ 80 (318)
T 3hwr_A 16 YFQGMKVAIMGAGAVGCYYGGMLARAG-------HEVILI-ARPQH------VQAIEATGLRLE-TQSFDEQVKVSASSD 80 (318)
T ss_dssp ----CEEEEESCSHHHHHHHHHHHHTT-------CEEEEE-CCHHH------HHHHHHHCEEEE-CSSCEEEECCEEESC
T ss_pred hccCCcEEEECcCHHHHHHHHHHHHCC-------CeEEEE-EcHhH------HHHHHhCCeEEE-cCCCcEEEeeeeeCC
Confidence 445789999999999999999999999 999999 76655 688888776654 344445555677778
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--------ceEEEeCc
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--------SCCVLMGA 209 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--------~~~v~~gp 209 (419)
+++ +.++|+||+|||+++++++++++.+.++++++||+++||++.+ +.+.+.+|. ...++.||
T Consensus 81 ~~~-~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~--------~~l~~~~~~~vl~g~~~~~a~~~gP 151 (318)
T 3hwr_A 81 PSA-VQGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENA--------DTLRSLLEQEVAAAVVYVATEMAGP 151 (318)
T ss_dssp GGG-GTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHH--------HHHHHHCCSEEEEEEEEEEEEEEET
T ss_pred HHH-cCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcH--------HHHHHHcCCcEEEEEEEEeEEEcCC
Confidence 765 6899999999999999999999999999999999999999863 344444431 13567889
Q ss_pred chHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCc----cHHH
Q 014757 210 NIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGN----NTKA 285 (419)
Q Consensus 210 ~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~----n~~~ 285 (419)
+++.+.+.|. +.++. .+..++++++|++.++++++++|+.+.+|.|+++|+..++.+...++.++. ....
T Consensus 152 ~~~~~~~~g~---~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~ 225 (318)
T 3hwr_A 152 GHVRHHGRGE---LVIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVE 225 (318)
T ss_dssp TEEEEEEEEE---EEECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHH
T ss_pred eEEEEcCCce---EEEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHH
Confidence 9888766553 34554 245678999999999999999999999999999999888888877776553 3356
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHH
Q 014757 286 AIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAR 365 (419)
Q Consensus 286 ~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~ 365 (419)
.++..+++|+.+++++.|...+++ +.+ +........+. ...+++||++ +|+.+|.+..+|
T Consensus 226 ~l~~~~~~E~~~va~a~G~~l~~~-~~~--------------~~~~~~~~~~~-~~sSM~qD~~----~gr~tEid~i~G 285 (318)
T 3hwr_A 226 AVMRDVMEECFAVARAEGVKLPDD-VAL--------------AIRRIAETMPR-QSSSTAQDLA----RGKRSEIDHLNG 285 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCTT-HHH--------------HHHHHHHHSTT-CCCHHHHHHH----TTCCCSGGGTHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCChH-HHH--------------HHHHHHHhcCC-CCcHHHHHHH----cCChhHHHHHHH
Confidence 899999999999999996322222 111 11122233333 2212356764 589999999999
Q ss_pred HHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 366 EVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 366 ~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
+++++|+++|+ ++|+++++|++++.
T Consensus 286 ~vv~~a~~~gv--~tP~~~~l~~ll~~ 310 (318)
T 3hwr_A 286 LIVRRGDALGI--PVPANRVLHALVRL 310 (318)
T ss_dssp HHHHHHHHTTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CCcHHHHHHHHHHH
Confidence 99999999999 99999999999874
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=267.92 Aligned_cols=283 Identities=13% Similarity=0.101 Sum_probs=208.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCc--cCCCCccCCCeEecCCHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVK--YLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~--~~~~~~l~~~i~~~~~~~ 139 (419)
|||+|||+|+||+++|..|+++| ++|++|+|++ .+.+++.|.... +.+++.++ .+.++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g-------~~V~~~~r~~--------~~~i~~~Gl~~~~~~~g~~~~~-~~~~~~~~~ 66 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTG-------HCVSVVSRSD--------YETVKAKGIRIRSATLGDYTFR-PAAVVRSAA 66 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTT-------CEEEEECSTT--------HHHHHHHCEEEEETTTCCEEEC-CSCEESCGG
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-------CeEEEEeCCh--------HHHHHhCCcEEeecCCCcEEEe-eeeeECCHH
Confidence 79999999999999999999999 9999999974 367777765432 34454443 355667877
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchH-------
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIA------- 212 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a------- 212 (419)
++..++|+||+|||+++++++++.+.+.++++++||+++||+++. +.+.+.++.. .++.|+.+.
T Consensus 67 ~~~~~~DlVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~--------~~l~~~~~~~-~vl~g~~~~~a~~~~p 137 (320)
T 3i83_A 67 ELETKPDCTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE--------PEVAAAFPDN-EVISGLAFIGVTRTAP 137 (320)
T ss_dssp GCSSCCSEEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS--------HHHHHHSTTS-CEEEEEEEEEEEEEET
T ss_pred HcCCCCCEEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH--------HHHHHHCCCC-cEEEEEEEeceEEcCC
Confidence 755589999999999999999999999999999999999999864 4556666532 222332221
Q ss_pred HHHHhcCceeEEEeec--CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCc---cHHHHH
Q 014757 213 NEIAVEKFSEATVGYR--DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGN---NTKAAI 287 (419)
Q Consensus 213 ~e~~~g~~~~~~~~~~--~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~---n~~~~l 287 (419)
.++..+.+..+.++.. .+.+..++++++|++.++++++++|+.+.+|.|+++|+..+......+...+. +....+
T Consensus 138 g~v~~~~~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l 217 (320)
T 3i83_A 138 GEIWHQAYGRLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGF 217 (320)
T ss_dssp TEEEEEEEEEEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHH
T ss_pred CEEEECCCCEEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHH
Confidence 1222233445667642 24578899999999999999999999999999999998655555555554432 222789
Q ss_pred HHHHHHHHHHHHHHhcCCCCcc-chhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHH
Q 014757 288 MRIGLREMRAFSKLLFSSVKDS-TFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTARE 366 (419)
Q Consensus 288 ~~~~~~E~~~la~a~g~g~~~~-~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~ 366 (419)
+.++++|+.++++++| ++.+ .+.+ +........+. ...+.++|++ +|+.+|++..+++
T Consensus 218 ~~~~~~E~~~va~a~G--~~l~~~~~~--------------~~~~~~~~~~~-~~sSM~qD~~----~gr~tEid~i~G~ 276 (320)
T 3i83_A 218 VRAIMQEIRAVAAANG--HPLPEDIVE--------------KNVASTYKMPP-YKTSMLVDFE----AGQPMETEVILGN 276 (320)
T ss_dssp HHHHHHHHHHHHHHTT--CCCCTTHHH--------------HHHHHHHHSCC-CCCHHHHHHH----HTCCCCHHHHTHH
T ss_pred HHHHHHHHHHHHHHcC--CCCChHHHH--------------HHHHHHhcCCC-CCCcHHHHHH----hCCCchHHHHccH
Confidence 9999999999999996 4432 2211 11112222332 2112356765 4899999999999
Q ss_pred HHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 367 VYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 367 v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
++++|+++|+ ++|+++++|++++.
T Consensus 277 vv~~a~~~gv--~~P~~~~l~~~l~~ 300 (320)
T 3i83_A 277 AVRAGRRTRV--AIPHLESVYALMKL 300 (320)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CCCHHHHHHHHHHH
Confidence 9999999999 99999999999974
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=270.96 Aligned_cols=281 Identities=11% Similarity=0.115 Sum_probs=212.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccC-CCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYL-PGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~-~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|+||+++|..|+++| ++|++|+|++ .+.+++.|.+..+. ++..++ .+.+++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g-------~~V~~~~r~~--------~~~i~~~g~~~~~~~g~~~~~-~~~~~~~~~~ 66 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSG-------EDVHFLLRRD--------YEAIAGNGLKVFSINGDFTLP-HVKGYRAPEE 66 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTS-------CCEEEECSTT--------HHHHHHTCEEEEETTCCEEES-CCCEESCHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-------CeEEEEEcCc--------HHHHHhCCCEEEcCCCeEEEe-eceeecCHHH
Confidence 79999999999999999999999 8999999974 36788777655432 233332 3456677765
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-c--------eEEEeCcch
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-S--------CCVLMGANI 211 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~--------~~v~~gp~~ 211 (419)
+.++|+||+|||+++++++++.+.+.++++++||+++||+++. +.+.+.+|. + .+.+.+|++
T Consensus 67 -~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~--------~~l~~~~~~~~v~~~~~~~~a~~~~p~~ 137 (312)
T 3hn2_A 67 -IGPMDLVLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNE--------EALATLFGAERIIGGVAFLCSNRGEPGE 137 (312)
T ss_dssp -HCCCSEEEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHH--------HHHHHHTCGGGEEEEEEEEECCBCSSSE
T ss_pred -cCCCCEEEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcH--------HHHHHHCCCCcEEEEEEEeeeEEcCCcE
Confidence 6899999999999999999999999999999999999999752 445555552 1 123456887
Q ss_pred HHHHHhcCceeEEEeec--CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC----ccHHH
Q 014757 212 ANEIAVEKFSEATVGYR--DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG----NNTKA 285 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~--~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~----~n~~~ 285 (419)
+.+.+. ..+.++.. .+.+..++++++|++.++++++++|+.+.+|.|+++|+..++.+...++.++ ++...
T Consensus 138 v~~~~~---g~~~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~ 214 (312)
T 3hn2_A 138 VHHLGA---GRIILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSR 214 (312)
T ss_dssp EEECEE---EEEEEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHH
T ss_pred EEECCC---CeEEEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHH
Confidence 765433 34566653 2457889999999999999999999999999999999987777777666655 35667
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHH
Q 014757 286 AIMRIGLREMRAFSKLLF--SSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVST 363 (419)
Q Consensus 286 ~l~~~~~~E~~~la~a~g--~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~ 363 (419)
.++.++++|+.++++++| ...+ +.+.+ .+. ........ ...++++|++ +|+.+|++..
T Consensus 215 ~l~~~~~~E~~~va~a~G~~~~~~-~~~~~------~~~--------~~~~~~~~-~~sSM~qD~~----~gr~tEid~i 274 (312)
T 3hn2_A 215 KLVRGIMLEVIAGANAQGLATFIA-DGYVD------DML--------EFTDAMGE-YKPSMEIDRE----EGRPLEIAAI 274 (312)
T ss_dssp HHHHHHHHHHHHHHHTSCCSSCCC-TTHHH------HHH--------HHHTTSCS-CCCHHHHHHH----TTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCC-HHHHH------HHH--------HHHhcCCC-CCchHHHHHH----hCCCccHHHH
Confidence 899999999999999996 3222 12211 111 11111222 1112256664 5899999999
Q ss_pred HHHHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 364 AREVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 364 ~~~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
+++++++|+++|+ ++|+++++|++++.
T Consensus 275 ~G~vv~~a~~~gv--~~P~~~~l~~ll~~ 301 (312)
T 3hn2_A 275 FRTPLAYGAREGI--AMPRVEMLATLLEQ 301 (312)
T ss_dssp THHHHHHHHHTTC--CCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCC--CCCHHHHHHHHHHH
Confidence 9999999999999 99999999999974
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-32 Score=267.32 Aligned_cols=291 Identities=12% Similarity=0.088 Sum_probs=210.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+|||+|||+|+||+++|..|+++| ++|++|+|+ +. .+.+++.|.+... ++...+.+++++++++
T Consensus 2 ~~mkI~IiGaG~~G~~~a~~L~~~g-------~~V~~~~r~-~~------~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 66 (335)
T 3ghy_A 2 SLTRICIVGAGAVGGYLGARLALAG-------EAINVLARG-AT------LQALQTAGLRLTE-DGATHTLPVRATHDAA 66 (335)
T ss_dssp CCCCEEEESCCHHHHHHHHHHHHTT-------CCEEEECCH-HH------HHHHHHTCEEEEE-TTEEEEECCEEESCHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEEECh-HH------HHHHHHCCCEEec-CCCeEEEeeeEECCHH
Confidence 4689999999999999999999999 899999996 33 5778877765432 3333333466778887
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccC------CCCccc-----HHHHHHhHhCC-c-----
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVK------REGPCM-----ISTLISEQLGV-S----- 202 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~------~~~~~~-----~~~~i~~~~g~-~----- 202 (419)
+ +.++|+||+|||+++++++++++.+.++++++||+++||++.. +.+... ..+.+.+.+|. +
T Consensus 67 ~-~~~~D~Vilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv 145 (335)
T 3ghy_A 67 A-LGEQDVVIVAVKAPALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCV 145 (335)
T ss_dssp H-HCCCSEEEECCCHHHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEE
T ss_pred H-cCCCCEEEEeCCchhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEE
Confidence 6 6899999999999999999999999999999999999997410 000010 12345555542 1
Q ss_pred ---eEEEeCcchHHHHHhcCceeEEEeec--CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHH----HHHHHHHh
Q 014757 203 ---CCVLMGANIANEIAVEKFSEATVGYR--DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKN----VVAIAAGF 273 (419)
Q Consensus 203 ---~~v~~gp~~a~e~~~g~~~~~~~~~~--~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~N----i~a~~~g~ 273 (419)
...+.+|+++.+...+ .+.++.. .+.+..++++++|+..++++++++|+.+..|.|++.| .+++..++
T Consensus 146 ~~~~a~~~~pg~v~~~~~g---~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~ 222 (335)
T 3ghy_A 146 VHLTCATVSPGHIRHGNGR---RLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGA 222 (335)
T ss_dssp ECCCEEESSTTEEEECSCC---EEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCC
T ss_pred EEEEEEEcCCcEEEECCCC---eEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCC
Confidence 1456788877654333 3566632 1457889999999999999999999999999998755 44444444
Q ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHh
Q 014757 274 VDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEML 353 (419)
Q Consensus 274 ~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~ 353 (419)
..+..++++....++.++++|+.++++++| ++++...+ + ........+. ...+.+||++
T Consensus 223 ~~g~~~~~~~~~~l~~~~~~E~~~va~a~G--~~~~~~~~-----~---------~~~~~~~~~~-~~sSM~qD~~---- 281 (335)
T 3ghy_A 223 TCDRILDDPLVSAFCLAVMAEAKAIGARIG--CPIEQSGE-----A---------RSAVTRQLGA-FKTSMLQDAE---- 281 (335)
T ss_dssp CHHHHHHSHHHHHHHHHHHHHHHHHHHTTT--CCCCSCHH-----H---------HHHHHHTTCS-CCCTTTC-------
T ss_pred ChHHHhcChHHHHHHHHHHHHHHHHHHHcC--CCCCccHH-----H---------HHHHHhccCC-CCcHHHHHHH----
Confidence 444334456778899999999999999996 55432111 0 1111222333 2223467775
Q ss_pred cCC-eeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 354 QGQ-KLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 354 ~g~-~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
+|+ .+|++..+++++++|+++|+ ++|+++++|++++.
T Consensus 282 ~gr~~tEid~i~G~vv~~a~~~gv--~~P~~~~l~~li~~ 319 (335)
T 3ghy_A 282 AGRGPLEIDALVASVREIGLHVGV--PTPQIDTLLGLVRL 319 (335)
T ss_dssp --CCCCCHHHHTHHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred cCCCCchHHHHhhHHHHHHHHhCC--CCCHHHHHHHHHHH
Confidence 479 99999999999999999999 99999999999975
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=245.85 Aligned_cols=271 Identities=10% Similarity=0.081 Sum_probs=191.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+|||+|||+|+||+++|..|+++| ++|++|+|+++. .+.....| ..+..+ +.++.+
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g-------~~V~~~~r~~~~------~~~~~~~g---------~~~~~~--~~~~~~ 57 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSL-------PHTTLIGRHAKT------ITYYTVPH---------APAQDI--VVKGYE 57 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHC-------TTCEEEESSCEE------EEEESSTT---------SCCEEE--EEEEGG
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-------CeEEEEEeccCc------EEEEecCC---------eeccce--ecCchH
Confidence 379999999999999999999999 899999998654 11101111 112222 223344
Q ss_pred Hh-cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHh--Hh-CC--ceEEEeCcchHHH
Q 014757 141 AV-KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISE--QL-GV--SCCVLMGANIANE 214 (419)
Q Consensus 141 a~-~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~--~~-g~--~~~v~~gp~~a~e 214 (419)
.+ .++|+||+|||+++++++++.+.+.++++++||+++||++..+ . +.. .+ +. ..+...||+++.
T Consensus 58 ~~~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~---~-----~~~~~v~~g~~~~~a~~~~pg~v~- 128 (294)
T 3g17_A 58 DVTNTFDVIIIAVKTHQLDAVIPHLTYLAHEDTLIILAQNGYGQLE---H-----IPFKNVCQAVVYISGQKKGDVVTH- 128 (294)
T ss_dssp GCCSCEEEEEECSCGGGHHHHGGGHHHHEEEEEEEEECCSSCCCGG---G-----CCCSCEEECEEEEEEEEETTEEEE-
T ss_pred hcCCCCCEEEEeCCccCHHHHHHHHHHhhCCCCEEEEeccCcccHh---h-----CCCCcEEEEEEEEEEEEcCCCEEE-
Confidence 44 7899999999999999999999999988999999999998742 1 111 11 11 134567888762
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC----ccHHHHHHHH
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG----NNTKAAIMRI 290 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~----~n~~~~l~~~ 290 (419)
. + +..+.+ . +.+..++++++|++.++++++++|+.+.+|.|+++|+..+.++ ..+...+ ++....++.+
T Consensus 129 ~--~-~~~~~~--~-~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~inl~a-l~~~~~g~~l~~~~~~~l~~~ 201 (294)
T 3g17_A 129 F--R-DYQLRI--Q-DNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGINSIT-ALGRQTVAIMHNPEIRILCRQ 201 (294)
T ss_dssp E--E-EEEEEE--E-CSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHHHHHHHHH-HHHTSCGGGGGSHHHHHHHHH
T ss_pred E--C-CCEEec--C-ccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHHHHHHHHH-HHCCChHHHHcCHHHHHHHHH
Confidence 1 2 333333 2 4577899999999999999999999999999999998432322 2344444 5677889999
Q ss_pred HHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHH
Q 014757 291 GLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 370 (419)
Q Consensus 291 ~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~ 370 (419)
+++|+.+++++.|...+++.+.. .+. .+. ........+.+||++ +|+.+|.+..+|+++++
T Consensus 202 ~~~E~~~va~a~G~~l~~~~~~~------~~~--------~~~-~~~~~~~sSM~qD~~----~gr~tEid~i~G~vv~~ 262 (294)
T 3g17_A 202 LLLDGCRVAQAEGLNFSEQTVDT------IMT--------IYQ-GYPDEMGTSMYYDIV----HQQPLEVEAIQGFIYRR 262 (294)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHH------HHH--------HHH-TSCTTCCCHHHHHHH----TTCCCSGGGTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHH------HHH--------HHh-hcCCCCCCcHHHHHH----cCCCccHHHhhhHHHHH
Confidence 99999999999963222211110 010 000 111101112256664 58999999999999999
Q ss_pred HHHcCCCcCCcHHHHHHHHHhC
Q 014757 371 LSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 371 a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
|+++|+ ++|+++++|++++.
T Consensus 263 a~~~gv--~~P~~~~l~~ll~~ 282 (294)
T 3g17_A 263 AREHNL--DTPYLDTIYSFLRA 282 (294)
T ss_dssp HHHTTC--CCHHHHHHHHHHHH
T ss_pred HHHhCC--CCChHHHHHHHHHH
Confidence 999999 99999999999974
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=242.69 Aligned_cols=291 Identities=11% Similarity=0.092 Sum_probs=198.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.||||+|||+|+||+++|..|+++| ++|++|+|++++ .+.+++.|.+..+.++. .+.++.+++ .+
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g-------~~V~~~~r~~~~------~~~~~~~g~~~~~~~~~-~~~~~~~~~-~~ 66 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGG-------NDVTLIDQWPAH------IEAIRKNGLIADFNGEE-VVANLPIFS-PE 66 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHHCEEEEETTEE-EEECCCEEC-GG
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCC-------CcEEEEECCHHH------HHHHHhCCEEEEeCCCe-eEecceeec-ch
Confidence 4689999999999999999999999 899999998765 67777666443222111 111222323 22
Q ss_pred HHh---cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---------eEEEe
Q 014757 140 NAV---KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---------CCVLM 207 (419)
Q Consensus 140 ea~---~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---------~~v~~ 207 (419)
+.. .++|+||+|||+.+++++++++.+.++++++|++++||++.. +.+.+.++.. ...+.
T Consensus 67 ~~~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~--------~~l~~~~~~~~vi~g~~~~~~~~~ 138 (316)
T 2ew2_A 67 EIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHE--------DVLEKYVPKENILVGITMWTAGLE 138 (316)
T ss_dssp GCCTTSCCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTH--------HHHTTTSCGGGEEEEEECCCCEEE
T ss_pred hhcccCCCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcH--------HHHHHHcCCccEEEEEeeeeeEEc
Confidence 333 389999999999999999999999999999999999998641 3333333211 12356
Q ss_pred CcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCC---ccH-
Q 014757 208 GANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMG---NNT- 283 (419)
Q Consensus 208 gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~---~n~- 283 (419)
+|+.+.+...|........+. +.+..++++++|+..|+++++.+|+...+|.|+++|++..+.+...+...+ .|.
T Consensus 139 ~p~~~~~~~~g~~~i~~~~~~-~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~ 217 (316)
T 2ew2_A 139 GPGRVKLLGDGEIELENIDPS-GKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPV 217 (316)
T ss_dssp ETTEEEECSCCCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTT
T ss_pred CCCEEEEecCCcEEEeecCCC-ccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHH
Confidence 777655444454322111233 678889999999999999999999999999999999866665555444321 233
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHH
Q 014757 284 KAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVST 363 (419)
Q Consensus 284 ~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~ 363 (419)
...++..+++|+.++++++| ++++. ..+.+.+.++.+.. .+.+ ...+..+|+. .+|+.+|++++
T Consensus 218 ~~~~~~~~~~E~~~la~~~G--~~~~~----~~~~~~~~~~~~~~------~~~~-~~~sm~~d~~---~~g~~~E~~~~ 281 (316)
T 2ew2_A 218 SESLVKTLISEFAAVAEKEA--IYLDQ----AEVYTHIVQTYDPN------GIGL-HYPSMYQDLI---KNHRLTEIDYI 281 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CCCCH----HHHHHHHHHTTCTT------TTTT-SCCHHHHHHT---TTCCCCSGGGT
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCCCh----HHHHHHHHHHhccc------cCCC-CCcHHHHHHH---HcCCcchHHHH
Confidence 34789999999999999996 56521 01122233322100 0011 1000123320 24678899999
Q ss_pred HHHHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 364 AREVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 364 ~~~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
++.++++|+++|+ ++|+++.+|++++.
T Consensus 282 ~~~~~~~a~~~gv--~~P~~~~~~~~~~~ 308 (316)
T 2ew2_A 282 NGAVWRKGQKYNV--ATPFCAMLTQLVHG 308 (316)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCC--CCCHHHHHHHHHHH
Confidence 9999999999999 99999999999864
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=239.16 Aligned_cols=277 Identities=12% Similarity=0.066 Sum_probs=201.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+|||+|||+|+||+++|..|+ +| ++|++|+|++++ .+.+++.|.+... ++...+..+... .+
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g-------~~V~~~~r~~~~------~~~l~~~G~~~~~-~~~~~~~~~~~~---~~ 63 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LY-------HDVTVVTRRQEQ------AAAIQSEGIRLYK-GGEEFRADCSAD---TS 63 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TT-------SEEEEECSCHHH------HHHHHHHCEEEEE-TTEEEEECCEEE---SS
T ss_pred CCEEEEECCCHHHHHHHHHHh-cC-------CceEEEECCHHH------HHHHHhCCceEec-CCCeeccccccc---cc
Confidence 489999999999999999999 99 999999998755 6788877765431 221122122221 12
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---------eEEEeCcch
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---------CCVLMGANI 211 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---------~~v~~gp~~ 211 (419)
+..++|+||+|||+++++++++.+.+. .+++ ||+++||++.+ +.+.+.+|.+ .+...+|++
T Consensus 64 ~~~~~D~vilavK~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~--------e~l~~~~~~~~vl~g~~~~~a~~~~pg~ 133 (307)
T 3ego_A 64 INSDFDLLVVTVKQHQLQSVFSSLERI-GKTN-ILFLQNGMGHI--------HDLKDWHVGHSIYVGIVEHGAVRKSDTA 133 (307)
T ss_dssp CCSCCSEEEECCCGGGHHHHHHHTTSS-CCCE-EEECCSSSHHH--------HHHHTCCCSCEEEEEEECCEEEECSSSE
T ss_pred ccCCCCEEEEEeCHHHHHHHHHHhhcC-CCCe-EEEecCCccHH--------HHHHHhCCCCcEEEEEEeeceEECCCCE
Confidence 356899999999999999999999875 5667 99999999863 4566655532 134556776
Q ss_pred HHHHHhcCceeEEEeecC-CHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCc----cHHHH
Q 014757 212 ANEIAVEKFSEATVGYRD-NREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGN----NTKAA 286 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~-~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~----n~~~~ 286 (419)
+.+.+.| .+.+|... ..+.++++.++|...++++.+++|+....|.|+++|+..++.+...+..++. +....
T Consensus 134 v~~~~~g---~~~iG~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~ 210 (307)
T 3ego_A 134 VDHTGLG---AIKWSAFDDAEPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLA 210 (307)
T ss_dssp EEEEECC---CEEEEECTTCCGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHH
T ss_pred EEEeeee---eEEEEeCCCCcHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHH
Confidence 6543333 34566531 2456677888899999999999999999999999999777777777777663 23467
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHH
Q 014757 287 IMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTARE 366 (419)
Q Consensus 287 l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~ 366 (419)
++...+.|+.+++++.+ ++.+.+ +.....+..+. ...+++||++ +|+.+|.+..+|+
T Consensus 211 l~~~l~~E~~~va~~~~----~~~~~~--------------~~~~~~~~~~~-~~sSM~qD~~----~gr~tEid~i~G~ 267 (307)
T 3ego_A 211 FMKLVFQEACRILKLEN----EEKAWE--------------RVQAVCGQTKE-NRSSMLVDVI----GGRQTEADAIIGY 267 (307)
T ss_dssp HHHHHHHHHHHHHTCSC----HHHHHH--------------HHHHHHHHTTT-CCCHHHHHHH----HTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC----hHHHHH--------------HHHHHHHhcCC-CCchHHHHHH----cCCcccHHHhhhH
Confidence 89999999999987641 222221 11111222222 2212367775 4899999999999
Q ss_pred HHHHHHHcCCCcCCcHHHHHHHHHhCC
Q 014757 367 VYEVLSHRGWLELFPLFATVHEICVGH 393 (419)
Q Consensus 367 v~~~a~~~gv~~~~P~~~~~~~~l~~~ 393 (419)
++++|+++|+ ++|+++++|++++.-
T Consensus 268 vv~~a~~~gv--~tP~~~~l~~li~~~ 292 (307)
T 3ego_A 268 LLKEASLQGL--DAVHLEFLYGSIKAL 292 (307)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC--CCcHHHHHHHHHHHH
Confidence 9999999999 999999999999753
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-28 Score=234.28 Aligned_cols=284 Identities=13% Similarity=0.071 Sum_probs=192.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHc-----CCCCCCCCceEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEe
Q 014757 61 KSKVTVVGSGNWGSVASKLIASN-----TLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~-----G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~ 134 (419)
+|||+|||+|+||+++|..|+++ |. ++|++|+| +++ .+.+++ .|.+....++.....++.+
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~------~~V~~~~r-~~~------~~~l~~~~g~~~~~~~~~~~~~~~~~ 74 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGL------LEVSWIAR-GAH------LEAIRAAGGLRVVTPSRDFLARPTCV 74 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSS------EEEEEECC-HHH------HHHHHHHTSEEEECSSCEEEECCSEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCC------CCEEEEEc-HHH------HHHHHhcCCeEEEeCCCCeEEecceE
Confidence 37999999999999999999998 72 58999999 554 677877 6654332222211223455
Q ss_pred cCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC----c-----eEE
Q 014757 135 DPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV----S-----CCV 205 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~----~-----~~v 205 (419)
+++.+ .+.++|+||+|||+++++++++++.+.++++++||+++||++.. +.+.+.++. . .+.
T Consensus 75 ~~~~~-~~~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~--------~~l~~~l~~~~v~~g~~~~~a~ 145 (317)
T 2qyt_A 75 TDNPA-EVGTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIA--------ERMRTYLPDTVVWKGCVYISAR 145 (317)
T ss_dssp ESCHH-HHCCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHH--------HHHTTTSCTTTBCEEEEEEEEE
T ss_pred ecCcc-ccCCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcH--------HHHHHHCCCCcEEEEEEEEEEE
Confidence 56654 46889999999999999999999999888899999999998642 344444432 1 234
Q ss_pred EeCcchHHHHHhcCceeEEEeec---CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 014757 206 LMGANIANEIAVEKFSEATVGYR---DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNN 282 (419)
Q Consensus 206 ~~gp~~a~e~~~g~~~~~~~~~~---~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n 282 (419)
+.+|+.+.+...| ...+++.. .+.+.. +++++|+..|+.+++.+|+...+|.|+++|+...+.+...+...+.+
T Consensus 146 ~~~pg~~~~~~~g--~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~ 222 (317)
T 2qyt_A 146 KSAPGLITLEADR--ELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSI 222 (317)
T ss_dssp EEETTEEEEEEEE--EEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred EcCCCEEEEcCCC--ceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHH
Confidence 4566554432233 22225431 146777 89999999999999999999999999999998777676666654433
Q ss_pred H--HHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccC--cccHHHHHHhhhccCCCCHHHHHHHHhcCCee
Q 014757 283 T--KAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLG--GRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKL 358 (419)
Q Consensus 283 ~--~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~ 358 (419)
. ...++.++++|+.++++++| +++++. .+.+++.++.. ++++. +..+|+. +|+.+
T Consensus 223 ~~~~~~~~~~~~~E~~~v~~a~G--~~~~~~----~~~~~~~~~~~~~~~~~~-----------sm~~d~~----~g~~~ 281 (317)
T 2qyt_A 223 LTEHEPELLSLLEEVAELFRAKY--GQVPDD----VVQQLLDKQRKMPPESTS-----------SMHSDFL----QGGST 281 (317)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHT--SCCCSS----HHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CCCChH----HHHHHHHHHhccCCCCCC-----------hHHHHHH----cCCcc
Confidence 2 34688899999999999996 565321 11122222211 11110 1234443 36788
Q ss_pred ehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 359 QGVSTAREVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 359 Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
|.+..++.++++|+++|+ ++|+++.+|++++.
T Consensus 282 E~~~~~g~~~~~a~~~gv--~~P~~~~~~~~~~~ 313 (317)
T 2qyt_A 282 EVETLTGYVVREAEALRV--DLPMYKRMYRELVS 313 (317)
T ss_dssp --CTTTHHHHHHHHHTTC--CCHHHHHHHHTTCC
T ss_pred CHHHHhhHHHHHHHHcCC--CCCHHHHHHHHHHH
Confidence 889999999999999999 99999999999875
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-25 Score=224.56 Aligned_cols=282 Identities=12% Similarity=0.148 Sum_probs=214.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-------cCCCeEe
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-------LGKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-------l~~~i~~ 134 (419)
-+|+|||+|.||+++|..|+++| |+|++|||++++ ++.+++ +.++.+.++.. .+.++++
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G-------~~V~~~D~~~~k------v~~l~~-g~~~~~epgl~~~~~~~~~~g~l~~ 74 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFG-------HEVVCVDKDARK------IELLHQ-NVMPIYEPGLDALVASNVKAGRLSF 74 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCSTT------HHHHTT-TCCSSCCTTHHHHHHHHHHTTCEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHhc-CCCCccCCCHHHHHHhhcccCCEEE
Confidence 58999999999999999999999 999999999988 899987 56667777754 3567889
Q ss_pred cCCHHHHhcCCCEEEEccCcc-----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC-Cc
Q 014757 135 DPDLENAVKDANMLVFVTPHQ-----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG-VS 202 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g-~~ 202 (419)
++|+++++.+||+||+|||+. +++++++++.+.++++++||..+ ++.+. +.+.+.+.+.+..+ .+
T Consensus 75 ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pg--tt~~l~~~l~e~~~~~d 151 (446)
T 4a7p_A 75 TTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVG--TGDEVERIIAEVAPNSG 151 (446)
T ss_dssp ESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTT--HHHHHHHHHHHHSTTSC
T ss_pred ECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCch--HHHHHHHHHHHhCCCCC
Confidence 999988899999999998764 59999999999999999999987 56653 45666677766543 35
Q ss_pred eEEEeCcchHHHHHh----cCceeEEEeecCCHHHHHHHHHHhCCCCcE---EEEcCcHHHHHHHHHHHHHHHHHHHhhh
Q 014757 203 CCVLMGANIANEIAV----EKFSEATVGYRDNREIAEKWVQLFSTPYFM---VTAVQDVEGVELCGTLKNVVAIAAGFVD 275 (419)
Q Consensus 203 ~~v~~gp~~a~e~~~----g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~---~~~~~di~~~e~~~al~Ni~a~~~g~~~ 275 (419)
+.+.++|.++.+... +.++.+++|+. +.+..++++++|+..+-. ++...|+.+.|..|+..|
T Consensus 152 ~~v~~~Pe~a~eG~a~~d~~~p~~ivvG~~-~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N---------- 220 (446)
T 4a7p_A 152 AKVVSNPEFLREGAAIEDFKRPDRVVVGTE-DEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAAN---------- 220 (446)
T ss_dssp CEEEECCCCCCTTSHHHHHHSCSCEEEECS-CHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHH----------
T ss_pred ceEEeCcccccccchhhhccCCCEEEEeCC-cHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHH----------
Confidence 789999998765432 45666677765 688899999999876543 466778888888776544
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcC
Q 014757 276 GLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQG 355 (419)
Q Consensus 276 ~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g 355 (419)
...++..+.++|+..+|+++ |+|++++.+..+.+..+ +.+.+.+|..++ | .++
T Consensus 221 -------~~~a~~ia~~nE~~~l~~~~--GiD~~~v~~~~~~~~ri----g~~~l~pg~G~g--g--~c~---------- 273 (446)
T 4a7p_A 221 -------AFLAVKITFINEIADLCEQV--GADVQEVSRGIGMDNRI----GGKFLHAGPGYG--G--SCF---------- 273 (446)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHTSTTC-------CCCCCSCCC--T--TTH----------
T ss_pred -------HHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhcCCCC----CCccCCCCCCcc--h--hhH----------
Confidence 55677889999999999999 58999988765443211 000011111111 1 232
Q ss_pred CeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 014757 356 QKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERKP 407 (419)
Q Consensus 356 ~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (419)
.||.+++...|++.|+ ++|+.+++.++- +..|..+++.+.+.+
T Consensus 274 -----~KD~~~l~~~A~~~g~--~~~l~~~~~~iN--~~~~~~~~~~i~~~l 316 (446)
T 4a7p_A 274 -----PKDTLALMKTAADNET--PLRIVEATVQVN--DARKRAMGRKVIKAM 316 (446)
T ss_dssp -----HHHHHHHHHHHHHTTC--CCHHHHHHHHHH--HHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHhcCC--CCHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 6799999999999999 999999999994 447777887777643
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=214.01 Aligned_cols=279 Identities=13% Similarity=0.084 Sum_probs=189.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|+||+++|..|+++| ++|++|+|++++ .+.++..+.+ +..++..+. .++. ++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g-------~~V~~~~r~~~~------~~~l~~~~~~-----~~~~~~~~~-~~~~-~~ 60 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQG-------HEVQGWLRVPQP------YCSVNLVETD-----GSIFNESLT-ANDP-DF 60 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCS------EEEEEEECTT-----SCEEEEEEE-ESCH-HH
T ss_pred CeEEEECcCHHHHHHHHHHHhCC-------CCEEEEEcCccc------eeeEEEEcCC-----Cceeeeeee-ecCc-cc
Confidence 69999999999999999999999 999999999875 2223322211 000111122 2444 45
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh-CCc--eEEEeCcchHHHHHhc
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL-GVS--CCVLMGANIANEIAVE 218 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~-g~~--~~v~~gp~~a~e~~~g 218 (419)
+.++|+||+|||+++++++++++.+.++++++|++++||++.. +.+.+.+.+.+ |.. ...+.+| .+.+...|
T Consensus 61 ~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~----~~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~g 135 (291)
T 1ks9_A 61 LATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTI----EELQNIQQPLLMGTTTHAARRDGN-VIIHVANG 135 (291)
T ss_dssp HHTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEECSSSCTT----GGGTTCCSCEEEEEECCEEEEETT-EEEEEECC
T ss_pred cCCCCEEEEEecHHhHHHHHHHHHhhCCCCCEEEEecCCCCcH----HHHHHhcCCeEEEEEeEccEEcCC-EEEEeccc
Confidence 7889999999999999999999999999999999999998652 22222222111 111 2456788 54444445
Q ss_pred CceeEEEe--ecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCc-cHHHHHHHHHHHHH
Q 014757 219 KFSEATVG--YRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGN-NTKAAIMRIGLREM 295 (419)
Q Consensus 219 ~~~~~~~~--~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~-n~~~~l~~~~~~E~ 295 (419)
. +.++ +. +.+..++++++|+..|+++++.+|+.+..|.|++.|....+.....+...+. .....++..+++|+
T Consensus 136 ~---~~i~~~~~-~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~ 211 (291)
T 1ks9_A 136 I---THIGPARQ-QDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEV 211 (291)
T ss_dssp C---EEEEESSG-GGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHH
T ss_pred c---eEEccCCC-CcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHH
Confidence 3 2333 23 4566788999999999999999999999999999997654444433333221 01247889999999
Q ss_pred HHHHHHhcCCCCc--cchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014757 296 RAFSKLLFSSVKD--STFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 296 ~~la~a~g~g~~~--~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
.++++++| +++ +.+.+ .+.++..++...+. +.++|+ .+|+.+|.+++++.++++|++
T Consensus 212 ~~va~a~G--~~~~~~~~~~--~~~~~~~~~~~~~s-------------sm~~d~----~~g~~~e~~~~~g~~~~~a~~ 270 (291)
T 1ks9_A 212 AAVIEREG--HHTSAEDLRD--YVMQVIDATAENIS-------------SMLQDI----RALRHTEIDYINGFLLRRARA 270 (291)
T ss_dssp HHHHHHHT--CCCCHHHHHH--HHHHHHHHTTTCCC-------------HHHHHH----HTTCCCSGGGTHHHHHHHHHH
T ss_pred HHHHHHcC--CCCCHHHHHH--HHHHHHhcCCCCCC-------------hHHHHH----HcCCccHHHHHHHHHHHHHHH
Confidence 99999996 554 22211 11111111111000 112333 246778888999999999999
Q ss_pred cCCCcCCcHHHHHHHHHhC
Q 014757 374 RGWLELFPLFATVHEICVG 392 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l~~ 392 (419)
+|+ ++|+++.+|++++.
T Consensus 271 ~gv--~~P~~~~~~~~~~~ 287 (291)
T 1ks9_A 271 HGI--AVPENTRLFEMVKR 287 (291)
T ss_dssp HTC--CCHHHHHHHHHHHH
T ss_pred hCC--CCCHHHHHHHHHHH
Confidence 999 99999999999863
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=216.21 Aligned_cols=271 Identities=15% Similarity=0.100 Sum_probs=193.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
+|+||+|||+|.||.+||.+|+++| |+|++|||++++ ++.+.+.| ++...+++
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G-------~~v~v~dr~~~~------~~~l~~~G--------------a~~a~s~~ 54 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAG-------YLLNVFDLVQSA------VDGLVAAG--------------ASAARSAR 54 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTT-------CEEEEECSSHHH------HHHHHHTT--------------CEECSSHH
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCC-------CeEEEEcCCHHH------HHHHHHcC--------------CEEcCCHH
Confidence 5789999999999999999999999 999999999876 67777655 45678899
Q ss_pred HHhcCCCEEEEccCc-chHHHHHHH---HhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchH
Q 014757 140 NAVKDANMLVFVTPH-QFMEGICKR---LVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIA 212 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl~~---l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a 212 (419)
|++..+|+||+|+|+ .++++++.. +.+.+++++++|++++ +.++ +.+.+++.+.+. |. +++|..||..+
T Consensus 55 e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT-~~p~--~~~~~a~~~~~~-G~~~lDaPVsGg~~~A 130 (300)
T 3obb_A 55 DAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECST-IAPT--SARKIHAAARER-GLAMLDAPVSGGTAGA 130 (300)
T ss_dssp HHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSC-CCHH--HHHHHHHHHHTT-TCEEEECCEESCHHHH
T ss_pred HHHhcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCC-CCHH--HHHHHHHHHHHc-CCEEEecCCCCCHHHH
Confidence 999999999999997 678888754 6677888999999987 3332 233444444432 43 34566777666
Q ss_pred HHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHH
Q 014757 213 NEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGL 292 (419)
Q Consensus 213 ~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~ 292 (419)
. .|. ..++.++ +++.+++++++|+..+-++++.++.-.....|++ +|........++
T Consensus 131 ~---~G~--L~imvGG-~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~-----------------~N~l~~~~~~a~ 187 (300)
T 3obb_A 131 A---AGT--LTFMVGG-DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVC-----------------NNQLLAVLMIGT 187 (300)
T ss_dssp H---HTC--EEEEEES-CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred H---hCC--EEEEEeC-CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHH-----------------HHHHHHHHHHHH
Confidence 5 364 3466666 7999999999999988888877775333334433 455556778899
Q ss_pred HHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHH---H-------HhhhccCCCCHHHHHHHHhcCCeeehHH
Q 014757 293 REMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVA---E-------AFAKNEGKRSFDDLEAEMLQGQKLQGVS 362 (419)
Q Consensus 293 ~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g---~-------~l~~~g~~~~~~~~~~~~~~g~~~Eg~~ 362 (419)
.|...++++. |++++++.+....+ . .....+- + .+.. ++ +++.+ ......|
T Consensus 188 aEa~~la~~~--Gld~~~~~~vl~~~------~-~~s~~~~~~~p~~~~~~~~~~~-~~-~~~~f--------~~~l~~K 248 (300)
T 3obb_A 188 AEAMALGVAN--GLEAKVLAEIMRRS------S-GGNWALEVYNPWPGVMENAPAS-RD-YSGGF--------MAQLMAK 248 (300)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHTS------T-TCCHHHHHCCCSTTTSTTSGGG-GT-TCSSS--------BHHHHHH
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHhC------c-ccchHHHhhccccchhhhcccc-cc-CCccc--------hHHHHHH
Confidence 9999999999 58998887642111 1 1111110 0 0111 10 11110 1223478
Q ss_pred HHHHHHHHHHHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014757 363 TAREVYEVLSHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 363 ~~~~v~~~a~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
|.+.+.++|++.|+ ++|+.+.+.+++ ++++|.++++++++.
T Consensus 249 Dl~l~~~~A~~~g~--~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~ 296 (300)
T 3obb_A 249 DLGLAQEAAQASAS--STPMGSLALSLYRLLLKQGYAERDFSVVQKLFDP 296 (300)
T ss_dssp HHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCT
T ss_pred HHHHHHHHHHHcCC--CChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHH
Confidence 99999999999999 999999988887 478999999999875
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=208.60 Aligned_cols=281 Identities=12% Similarity=0.055 Sum_probs=200.8
Q ss_pred CCCCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeE
Q 014757 54 SDDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 54 ~~~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~ 133 (419)
.......||||+|||+|.||.++|..|+++| ++|++|+|++++ ++.+.+.| +.
T Consensus 14 ~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G-------~~V~~~dr~~~~------~~~l~~~g--------------~~ 66 (310)
T 3doj_A 14 LVPRGSHMMEVGFLGLGIMGKAMSMNLLKNG-------FKVTVWNRTLSK------CDELVEHG--------------AS 66 (310)
T ss_dssp ----CCCSCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSGGG------GHHHHHTT--------------CE
T ss_pred cCcccccCCEEEEECccHHHHHHHHHHHHCC-------CeEEEEeCCHHH------HHHHHHCC--------------Ce
Confidence 3344677899999999999999999999999 999999999876 56666544 35
Q ss_pred ecCCHHHHhcCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEE
Q 014757 134 ADPDLENAVKDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVL 206 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~ 206 (419)
.++++++++.++|+||+|||. .++++++ +++.+.+.++++||++++ +.+. +...+.+.+.+. |.. .++.
T Consensus 67 ~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st-~~~~--~~~~~~~~~~~~-g~~~v~~pv~ 142 (310)
T 3doj_A 67 VCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMST-VDAE--TSLKINEAITGK-GGRFVEGPVS 142 (310)
T ss_dssp ECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSC-CCHH--HHHHHHHHHHHT-TCEEEECCEE
T ss_pred EcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCC-CCHH--HHHHHHHHHHHc-CCEEEeCCCC
Confidence 678888888999999999997 5888888 788888889999999875 3221 122333344332 432 2344
Q ss_pred eCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHH
Q 014757 207 MGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAA 286 (419)
Q Consensus 207 ~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~ 286 (419)
.+|..+. .|. ..++.++ +.+.+++++++|+..|.++...++....++.|++.|. ...
T Consensus 143 g~~~~a~---~g~--l~i~~gg-~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~-----------------~~~ 199 (310)
T 3doj_A 143 GSKKPAE---DGQ--LIILAAG-DKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNM-----------------IMG 199 (310)
T ss_dssp CCHHHHH---HTC--EEEEEEE-CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHH-----------------HHH
T ss_pred CChhHHh---cCC--eEEEEcC-CHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHHHHHHH-----------------HHH
Confidence 4444433 344 3344555 7889999999999988888888777666777766554 334
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCccc-HHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHH
Q 014757 287 IMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRN-RKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAR 365 (419)
Q Consensus 287 l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn-~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~ 365 (419)
....+++|+..++++. |++++++.+..+.+ ++. ++. ...+..+.. ++ +... .......||.+
T Consensus 200 ~~~~~~~Ea~~l~~~~--G~d~~~~~~~~~~~----~~~-s~~~~~~~~~~~~-~~-~~~~--------f~~~~~~KDl~ 262 (310)
T 3doj_A 200 SMMNAFSEGLVLADKS--GLSSDTLLDILDLG----AMT-NPMFKGKGPSMNK-SS-YPPA--------FPLKHQQKDMR 262 (310)
T ss_dssp HHHHHHHHHHHHHHHT--TSCHHHHHHHHHHS----TTC-CHHHHHHHHHHHT-TC-CCCS--------SBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHHHHhc----ccc-cHHHHHHhhhhhc-CC-CCCC--------ccHHHHHHHHH
Confidence 5667899999999999 58998887753222 111 211 123555554 32 2211 12335589999
Q ss_pred HHHHHHHHcCCCcCCcHHHHHHHHHh-------CCCCHHHHHHHHhcCC
Q 014757 366 EVYEVLSHRGWLELFPLFATVHEICV-------GHLPPSAIVEYSERKP 407 (419)
Q Consensus 366 ~v~~~a~~~gv~~~~P~~~~~~~~l~-------~~~~~~~~~~~~~~~~ 407 (419)
.++++|++.|+ ++|+++.+++++. ++.|.+++++++++..
T Consensus 263 ~~~~~a~~~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 309 (310)
T 3doj_A 263 LALALGDENAV--SMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFSR 309 (310)
T ss_dssp HHHHHHHHTTC--CCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHCCC
T ss_pred HHHHHHHHcCC--CChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHhcC
Confidence 99999999999 9999999999983 6789999999998753
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=222.85 Aligned_cols=281 Identities=14% Similarity=0.168 Sum_probs=209.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc--c-----CCCeEe
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK--L-----GKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~--l-----~~~i~~ 134 (419)
|||+|||+|.||.++|..|+++| ++|++|+|++++ ++.+++ +..+.+.++.. + ..++++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G-------~~V~~~D~~~~~------v~~l~~-g~~~i~e~gl~~~l~~~~~~~~l~~ 68 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELG-------ANVRCIDTDRNK------IEQLNS-GTIPIYEPGLEKMIARNVKAGRLRF 68 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHH-TCSCCCSTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcC-------CEEEEEECCHHH------HHHHHc-CCCcccCCCHHHHHHhhcccCcEEE
Confidence 79999999999999999999999 999999999876 788877 55555555542 1 456788
Q ss_pred cCCHHHHhcCCCEEEEccCcc----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh---C-
Q 014757 135 DPDLENAVKDANMLVFVTPHQ----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL---G- 200 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~---g- 200 (419)
++++++++.++|+||+|||+. .++++++++.+.++++++||..++ +.+. +.+.+.+.+.+.. +
T Consensus 69 t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST-v~pg--t~~~l~~~l~~~~~~~~~ 145 (450)
T 3gg2_A 69 GTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST-VPVG--SYRLIRKAIQEELDKREV 145 (450)
T ss_dssp ESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC-CCTT--HHHHHHHHHHHHHHHTTC
T ss_pred ECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee-CCCc--chHHHHHHHHHhccccCc
Confidence 999998899999999999987 899999999999999999998874 5543 3455666666543 1
Q ss_pred -CceEEEeCcchHHHHHh----cCceeEEEeecCCHHHHHHHHHHhCCCCc--EEEEcCcHHHHHHHHHHHHHHHHHHHh
Q 014757 201 -VSCCVLMGANIANEIAV----EKFSEATVGYRDNREIAEKWVQLFSTPYF--MVTAVQDVEGVELCGTLKNVVAIAAGF 273 (419)
Q Consensus 201 -~~~~v~~gp~~a~e~~~----g~~~~~~~~~~~~~~~~~~l~~ll~~~g~--~~~~~~di~~~e~~~al~Ni~a~~~g~ 273 (419)
.++.+.++|.++.+... ..++.+++|+. +.+..++++++|+..+- ..+...|+.+.|+.|+..|
T Consensus 146 ~~d~~v~~~Pe~a~eG~~~~~~~~p~~ivvG~~-~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N-------- 216 (450)
T 3gg2_A 146 LIDFDIASNPEFLKEGNAIDDFMKPDRVVVGVD-SDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAAN-------- 216 (450)
T ss_dssp CCCEEEEECCCCCCTTSHHHHHHSCSCEEEEES-SHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHH--------
T ss_pred CcceeEEechhhhcccchhhhccCCCEEEEEcC-CHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHH--------
Confidence 45789999988764322 45556777776 78899999999996543 1345678888888776544
Q ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHh
Q 014757 274 VDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEML 353 (419)
Q Consensus 274 ~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~ 353 (419)
...++..++++|+.++|+++ |+|++++.+..+.+..+ +.+.+..|..++ | .+
T Consensus 217 ---------~~~a~~ia~~nE~~~l~~~~--Gid~~~v~~~~~~~~ri----g~~~~~pg~G~g--g--~c--------- 268 (450)
T 3gg2_A 217 ---------AMLATRISFMNDVANLCERV--GADVSMVRLGIGSDSRI----GSKFLYPGCGYG--G--SC--------- 268 (450)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHH--TCCHHHHHHHHHTSTTT----CSSSCCCSSCCC--S--SH---------
T ss_pred ---------HHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHcCCCCC----CcccCCCCCCCC--c--cc---------
Confidence 55677899999999999999 48999998765543211 011111111111 1 12
Q ss_pred cCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 354 QGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 354 ~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
..||.+++...|++.|+ ++|+.+++.++-.. .|..+++.+.+.
T Consensus 269 ------~~KD~~~l~~~a~~~g~--~~~l~~~~~~iN~~--~~~~~~~~~~~~ 311 (450)
T 3gg2_A 269 ------FPKDVKALIRTAEDNGY--RMEVLEAVERVNEK--QKSILFDKFSTY 311 (450)
T ss_dssp ------HHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHH--HTTHHHHHHHHH
T ss_pred ------HHhhHHHHHHHHHHcCC--CcHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 26799999999999999 99999999999554 555666666653
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=222.11 Aligned_cols=282 Identities=14% Similarity=0.138 Sum_probs=205.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc--c-----CCCe
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK--L-----GKNV 132 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~--l-----~~~i 132 (419)
..|||+|||+|.||+++|..|+++| ++|++|++++++ ++.+++.+ .+.+.++.. + +.++
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G-------~~V~~~d~~~~~------v~~l~~~~-~~i~e~gl~~~l~~~~~~~~l 72 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIG-------HDVFCLDVDQAK------IDILNNGG-VPIHEPGLKEVIARNRSAGRL 72 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHTTC-CSSCCTTHHHHHHHHHHTTCE
T ss_pred CCceEEEECcCHHHHHHHHHHHhCC-------CEEEEEECCHHH------HHHHHCCC-CCcCCCCHHHHHHHhcccCCE
Confidence 3589999999999999999999999 999999998876 78888754 344444432 1 2457
Q ss_pred EecCCHHHHhcCCCEEEEccCc----------chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh--C
Q 014757 133 VADPDLENAVKDANMLVFVTPH----------QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL--G 200 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~----------~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~--g 200 (419)
++++++++++.++|+||+|||+ .+++++++++.++++++++||..+ ++.+. +.+.+.+.+.+.+ |
T Consensus 73 ~~ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S-Tv~~g--t~~~l~~~l~~~~~~g 149 (478)
T 2y0c_A 73 RFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS-TVPVG--TAERVRAAVAEELAKR 149 (478)
T ss_dssp EEECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTT--HHHHHHHHHHHHHHHT
T ss_pred EEECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CcCCC--chHHHHHHHHHHhcCC
Confidence 8899998888899999999998 799999999999999999998876 66543 3445666666542 3
Q ss_pred ---CceEEEeCcchHHHHH----hcCceeEEEeecCCH----HHHHHHHHHhCCCCc--EEEEcCcHHHHHHHHHHHHHH
Q 014757 201 ---VSCCVLMGANIANEIA----VEKFSEATVGYRDNR----EIAEKWVQLFSTPYF--MVTAVQDVEGVELCGTLKNVV 267 (419)
Q Consensus 201 ---~~~~v~~gp~~a~e~~----~g~~~~~~~~~~~~~----~~~~~l~~ll~~~g~--~~~~~~di~~~e~~~al~Ni~ 267 (419)
..+.+.++|.++.+.. .+.+..+++|+. +. +..++++++|+...- .++...|+...+|.|++.|.
T Consensus 150 ~~~~~~~v~~~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~- 227 (478)
T 2y0c_A 150 GGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANA- 227 (478)
T ss_dssp TCCCCEEEEECCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHH-
T ss_pred CCCccEEEEEChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHH-
Confidence 4578889998765422 144555677765 45 788999999986332 36777899999999977665
Q ss_pred HHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHH
Q 014757 268 AIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDD 347 (419)
Q Consensus 268 a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~ 347 (419)
..++....++|+.++|+++| ++++++.+..+....+ ..+++..|..++ | .+
T Consensus 228 ----------------~~a~~ia~~nE~~~la~~~G--id~~~v~~~i~~~~ri----g~~~~~pG~g~g--g--~c--- 278 (478)
T 2y0c_A 228 ----------------MLATRISFMNELANLADRFG--ADIEAVRRGIGSDPRI----GYHFLYAGCGYG--G--SC--- 278 (478)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHTSTTT----CSTTCCCSSCCC--S--SS---
T ss_pred ----------------HHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHhcCCcc----CcccCCCCcccc--c--Cc---
Confidence 45677889999999999994 8888776543321100 011111111111 1 12
Q ss_pred HHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014757 348 LEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 348 ~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
..+|.++++++|+++|+ ++|+++++++++..++. .+++.+.+
T Consensus 279 ------------~~kD~~~l~~~A~~~gv--~~pl~~~v~~in~~~~~--~~~~~~~~ 320 (478)
T 2y0c_A 279 ------------FPKDVEALIRTADEHGQ--SLQILKAVSSVNATQKR--VLADKIVA 320 (478)
T ss_dssp ------------HHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHhHH--HHHHHHHH
Confidence 15689999999999999 99999999999987544 44444443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-24 Score=206.29 Aligned_cols=272 Identities=10% Similarity=0.018 Sum_probs=195.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|.||.++|..|+++| ++|++|+|++++ .+.+.+.| +..++++++
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G-------~~V~~~dr~~~~------~~~~~~~g--------------~~~~~~~~~ 53 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAG-------FDVTVWNRNPAK------CAPLVALG--------------ARQASSPAE 53 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHT-------CCEEEECSSGGG------GHHHHHHT--------------CEECSCHHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHCC-------CeEEEEcCCHHH------HHHHHHCC--------------CeecCCHHH
Confidence 579999999999999999999999 999999999876 56666544 356788888
Q ss_pred HhcCCCEEEEccCcc-hHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce---EEEeCcchHH
Q 014757 141 AVKDANMLVFVTPHQ-FMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC---CVLMGANIAN 213 (419)
Q Consensus 141 a~~~aDlVilavp~~-~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~---~v~~gp~~a~ 213 (419)
++.++|+||+|||+. ++++++ +++.+.+.++++||+++++... +...+.+.+.+ .|..+ ++..+|..+.
T Consensus 54 ~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~---~~~~~~~~~~~-~g~~~~~~pv~g~~~~a~ 129 (287)
T 3pdu_A 54 VCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDE---TSTAIGAAVTA-RGGRFLEAPVSGTKKPAE 129 (287)
T ss_dssp HHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHH---HHHHHHHHHHH-TTCEEEECCEECCHHHHH
T ss_pred HHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHH---HHHHHHHHHHH-cCCEEEECCccCCHHHHh
Confidence 888999999999985 899988 7888888899999998764321 12233333333 24322 2334443332
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~ 293 (419)
.|. ..++.++ +.+.+++++++|+..+.++....+....+|.|+..|. .......+++
T Consensus 130 ---~g~--l~~~~gg-~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~-----------------~~~~~~~~~~ 186 (287)
T 3pdu_A 130 ---DGT--LIILAAG-DQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNM-----------------IMGQMMTALG 186 (287)
T ss_dssp ---HTC--EEEEEEE-CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred ---cCC--EEEEEeC-CHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 343 3355555 7889999999999988888887776666777766554 3446678899
Q ss_pred HHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHH
Q 014757 294 EMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSH 373 (419)
Q Consensus 294 E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~ 373 (419)
|+.+++++. |++++++.+..+.+. +.+.-....+..+.+ ++ +... ....+..||.+.++++|++
T Consensus 187 Ea~~l~~~~--G~~~~~~~~~~~~~~----~~s~~~~~~~~~~~~-~~-~~~~--------~~~~~~~kd~~~~~~~a~~ 250 (287)
T 3pdu_A 187 EGMALGRNC--GLDGGQLLEVLDAGA----MANPMFKGKGQMLLS-GE-FPTS--------FPLKHMQKDLRLAVELGDR 250 (287)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHST----TCCHHHHHHHHHHHH-TC-CCCS--------SBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHhcc----ccChHHHhhcccccc-CC-CCCC--------CcHHHHHHHHHHHHHHHHH
Confidence 999999999 589998887543221 111101123555554 32 2211 1234568999999999999
Q ss_pred cCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHh
Q 014757 374 RGWLELFPLFATVHEIC-------VGHLPPSAIVEYSE 404 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~ 404 (419)
.|+ ++|+++.+++++ +++.|...++++++
T Consensus 251 ~g~--~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 251 LGQ--PLHGAATANESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred cCC--CChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 999 999999999988 36788888888775
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=204.04 Aligned_cols=276 Identities=11% Similarity=0.013 Sum_probs=191.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+|||+|||+|.||+++|..|+++| ++|++|+|++++ .+.+.+.|.. ..+++++
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G-------~~V~~~dr~~~~------~~~~~~~g~~-------------~~~~~~~ 59 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAG-------LSTWGADLNPQA------CANLLAEGAC-------------GAAASAR 59 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHTTCS-------------EEESSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-------CeEEEEECCHHH------HHHHHHcCCc-------------cccCCHH
Confidence 3579999999999999999999999 999999998766 6677665421 1256777
Q ss_pred HHhcCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchH
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIA 212 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a 212 (419)
+++.++|+||+|||+ ..++.++ +++.+.++++++||++++.... +...+.+.+.+ .|.. .++..+|..+
T Consensus 60 e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~---~~~~~~~~~~~-~g~~~~~~pv~g~~~~a 135 (303)
T 3g0o_A 60 EFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSA---DAQEIAAALTA-LNLNMLDAPVSGGAVKA 135 (303)
T ss_dssp TTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHH---HHHHHHHHHHT-TTCEEEECCEESCHHHH
T ss_pred HHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHH---HHHHHHHHHHH-cCCeEEeCCCCCChhhh
Confidence 888899999999998 5788887 7788888899999998763221 11223333332 1332 1233444433
Q ss_pred HHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc-HHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHH
Q 014757 213 NEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD-VEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIG 291 (419)
Q Consensus 213 ~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d-i~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~ 291 (419)
. .|. ..++.++ +++.+++++++|+..|.++...++ +...+|.|+..|. ...+...+
T Consensus 136 ~---~g~--l~~~~gg-~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~-----------------~~~~~~~~ 192 (303)
T 3g0o_A 136 A---QGE--MTVMASG-SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQL-----------------LAGVHIAA 192 (303)
T ss_dssp H---TTC--EEEEEEC-CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHH-----------------HHHHHHHH
T ss_pred h---cCC--eEEEeCC-CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHH-----------------HHHHHHHH
Confidence 2 343 3455555 789999999999998888776665 6666777766554 34456788
Q ss_pred HHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHH
Q 014757 292 LREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVL 371 (419)
Q Consensus 292 ~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a 371 (419)
++|+.+++++. |++++++.+..+.+ ++.+......+..+.. ++ +... .......||.+.++++|
T Consensus 193 ~~Ea~~l~~~~--G~d~~~~~~~~~~~----~~~s~~~~~~~~~~~~-~~-~~~~--------~~~~~~~kD~~~~~~~a 256 (303)
T 3g0o_A 193 AAEAMALAARA--GIPLDVMYDVVTHA----AGNSWMFENRMQHVVD-GD-YTPR--------SAVDIFVKDLGLVADTA 256 (303)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHTTS----TTCCHHHHHHHHHHHT-TC-CCCS--------SBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHhc----ccCCHHHHhhhHHHhc-CC-CCCC--------CchHHHHHHHHHHHHHH
Confidence 99999999999 58999888754332 1111111122344444 31 2211 12334588999999999
Q ss_pred HHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhcC
Q 014757 372 SHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSERK 406 (419)
Q Consensus 372 ~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~~ 406 (419)
++.|+ ++|+++.+++++ +++.|.+.+++++++.
T Consensus 257 ~~~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (303)
T 3g0o_A 257 KALRF--PLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296 (303)
T ss_dssp HHTTC--CCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC---
T ss_pred HHcCC--CChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhc
Confidence 99999 999999999998 4678888888887764
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=202.21 Aligned_cols=271 Identities=13% Similarity=0.053 Sum_probs=194.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||.++|..|+++| ++|++|+|++++ .+.+.+.| +..+++++++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G-------~~V~~~dr~~~~------~~~~~~~g--------------~~~~~~~~~~ 54 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAG-------CSVTIWNRSPEK------AEELAALG--------------AERAATPCEV 54 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSGGG------GHHHHHTT--------------CEECSSHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCC-------CeEEEEcCCHHH------HHHHHHCC--------------CeecCCHHHH
Confidence 79999999999999999999999 999999999876 56666643 4567888888
Q ss_pred hcCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHH
Q 014757 142 VKDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANE 214 (419)
Q Consensus 142 ~~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e 214 (419)
+.++|+||+|||+ ..+++++ +++.+.++++++||++++ +.+. +...+.+.+.+ .|.. .++..+|..+.
T Consensus 55 ~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st-~~~~--~~~~~~~~~~~-~g~~~~~~pv~g~~~~a~- 129 (287)
T 3pef_A 55 VESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMST-VDPA--TSQRIGVAVVA-KGGRFLEAPVSGSKKPAE- 129 (287)
T ss_dssp HHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSC-CCHH--HHHHHHHHHHH-TTCEEEECCEECCHHHHH-
T ss_pred HhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCC-CCHH--HHHHHHHHHHH-hCCEEEECCCcCCHHHHh-
Confidence 8899999999994 7899998 888888889999999865 3321 12233333333 2432 23445554443
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHH
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLRE 294 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E 294 (419)
.+. ..++.++ +.+.+++++++|+..+.++...++....+|.|+..|.+ ......+++|
T Consensus 130 --~g~--l~~~~gg-~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~-----------------~~~~~~~~~E 187 (287)
T 3pef_A 130 --DGT--LIILAAG-DRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMV-----------------MGGMMACFCE 187 (287)
T ss_dssp --HTC--EEEEEEE-CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred --cCC--EEEEEeC-CHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 343 2345555 78899999999999898888887777777777666653 3456778999
Q ss_pred HHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHc
Q 014757 295 MRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 374 (419)
Q Consensus 295 ~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~ 374 (419)
+.+++++. |++++++.+..+.+. +.+.-....++.+.+ ++ +... .......||.+.++++|++.
T Consensus 188 ~~~l~~~~--G~d~~~~~~~~~~~~----~~s~~~~~~~~~~~~-~~-~~~~--------~~~~~~~kd~~~~~~~a~~~ 251 (287)
T 3pef_A 188 GLALGEKA--GLATDAILDVIGAGA----MANPMFALKGGLIRD-RN-FAPA--------FPLKHMQKDLRLAVALGDRV 251 (287)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHST----TCCHHHHHHHHHHHT-TC-CCCS--------SBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHhcc----cccHHHHHHhhhhhc-CC-CCCC--------CchHHHHHHHHHHHHHHHHc
Confidence 99999999 589998887533221 111111123555554 32 2211 12335588999999999999
Q ss_pred CCCcCCcHHHHHHHHHh-------CCCCHHHHHHHHh
Q 014757 375 GWLELFPLFATVHEICV-------GHLPPSAIVEYSE 404 (419)
Q Consensus 375 gv~~~~P~~~~~~~~l~-------~~~~~~~~~~~~~ 404 (419)
|+ ++|+++.+++++. ++.|...++++++
T Consensus 252 g~--~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pef_A 252 GQ--PLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286 (287)
T ss_dssp TC--CCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred CC--CChHHHHHHHHHHHHHHcCCCccCHHHHHHHHh
Confidence 99 9999999999883 5677777776654
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=203.85 Aligned_cols=272 Identities=11% Similarity=0.082 Sum_probs=186.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+||+|||+|.||.+||.+|+++| |+|++|||++++ ++.+.+.| ++..+++.|+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G-------~~V~v~dr~~~~------~~~l~~~G--------------~~~~~s~~e~ 58 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAG-------YELVVWNRTASK------AEPLTKLG--------------ATVVENAIDA 58 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT-------CEEEEC-------------CTTTTTT--------------CEECSSGGGG
T ss_pred CcEEEEecHHHHHHHHHHHHHCC-------CeEEEEeCCHHH------HHHHHHcC--------------CeEeCCHHHH
Confidence 48999999999999999999999 999999999877 45554433 4567888899
Q ss_pred hcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHHHHH
Q 014757 142 VKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIANEIA 216 (419)
Q Consensus 142 ~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~e~~ 216 (419)
+..+|+||+|+|+ .++++++ ..+.+.+++++++|++++ +.++ +.+.+.+.+.+. |. ++++..||..+.
T Consensus 59 ~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT-~~p~--~~~~~~~~~~~~-g~~~ldapVsGg~~~a~--- 131 (297)
T 4gbj_A 59 ITPGGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMST-ISPE--TSRQLAQVHEWY-GAHYVGAPIFARPEAVR--- 131 (297)
T ss_dssp CCTTCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSC-CCHH--HHHHHHHHHHHT-TCEEEECCEECCHHHHH---
T ss_pred HhcCCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCC-CChH--HHHHHHHHHHhc-CCceecCCcCCCccccc---
Confidence 9999999999997 4555554 557777888999999986 4332 233344444432 43 235556665554
Q ss_pred hcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcC-cHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHH
Q 014757 217 VEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQ-DVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREM 295 (419)
Q Consensus 217 ~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~-di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~ 295 (419)
.|.. .++.++ +.+.+++++++|+..+-++++.. ++-.....|+ .+|........++.|+
T Consensus 132 ~g~l--~im~gG-~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl-----------------~~N~~~~~~~~~~aEa 191 (297)
T 4gbj_A 132 AKVG--NICLSG-NAGAKERIKPIVENFVKGVFDFGDDPGAANVIKL-----------------AGNFMIACSLEMMGEA 191 (297)
T ss_dssp HTCC--EEEEEE-CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHH-----------------HHHHHHHHHHHHHHHH
T ss_pred cccc--eeeccc-chhHHHHHHHHHHHhhCCeEEecCCccHHHHHHH-----------------HHHHHHHHHHHHHHHH
Confidence 3543 355555 78999999999999998887765 4433333343 3455566778899999
Q ss_pred HHHHHHhcCCCCccchhcccCCcceeecccCccc-HHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHc
Q 014757 296 RAFSKLLFSSVKDSTFFESCGVADLITTCLGGRN-RKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHR 374 (419)
Q Consensus 296 ~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn-~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~ 374 (419)
..++++. |++++++++...-+ ...+.. ...++.+.. ++ +.+..+ ......||.++++++|++.
T Consensus 192 ~~la~~~--Gld~~~~~~~l~~~-----~~~s~~~~~~~~~~~~-~~-~~p~~f-------~~~l~~KDl~l~~~~A~~~ 255 (297)
T 4gbj_A 192 FTMAEKN--GISRQSIYEMLTST-----LFAAPIFQNYGKLVAS-NT-YEPVAF-------RFPLGLKDINLTLQTASDV 255 (297)
T ss_dssp HHHHHHT--TCCHHHHHHHHHTT-----TTCSHHHHHHHHHHHH-TC-CCSCSS-------BHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHhh-----cccCchhhccCccccC-CC-CCCccc-------hhHHHHHHHHHHHHHHHHh
Confidence 9999999 58999988742111 111211 123455554 32 221000 1223478999999999999
Q ss_pred CCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014757 375 GWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 375 gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
|+ ++|+.+.+.+++ +++.|.+++++.+++
T Consensus 256 g~--~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~ 291 (297)
T 4gbj_A 256 NA--PMPFADIIRNRFISGLAKGRENLDWGALALGASD 291 (297)
T ss_dssp TC--CCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHH
T ss_pred CC--CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99 999999999988 578999999998876
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=196.66 Aligned_cols=271 Identities=14% Similarity=0.119 Sum_probs=189.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||..++..|+++| ++|++|+|++++ .+.+.+.| +..+++++++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g-------~~V~~~~~~~~~------~~~~~~~g--------------~~~~~~~~~~ 58 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAG-------YSLVVSDRNPEA------IADVIAAG--------------AETASTAKAI 58 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHTT--------------CEECSSHHHH
T ss_pred ceEEEECchHHHHHHHHHHHhCC-------CEEEEEeCCHHH------HHHHHHCC--------------CeecCCHHHH
Confidence 79999999999999999999999 899999998765 56666543 3456778787
Q ss_pred hcCCCEEEEccC-cchHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHH--HH
Q 014757 142 VKDANMLVFVTP-HQFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIAN--EI 215 (419)
Q Consensus 142 ~~~aDlVilavp-~~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~--e~ 215 (419)
+.++|+||+|+| +.+++.++ +++.+.++++++||++++|.... ...+.+.+.+. |. .++..|.... ..
T Consensus 59 ~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~---~~~l~~~~~~~-g~--~~~~~pv~~~~~~~ 132 (299)
T 1vpd_A 59 AEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLA---SREISDALKAK-GV--EMLDAPVSGGEPKA 132 (299)
T ss_dssp HHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHH---HHHHHHHHHTT-TC--EEEECCEESHHHHH
T ss_pred HhCCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHH---HHHHHHHHHHc-CC--eEEEecCCCCHhHH
Confidence 889999999999 56788888 67888888999999999876421 12233333321 32 2222222111 11
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHH
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREM 295 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~ 295 (419)
..+. ..++.++ +.+..++++++|+..|.++++.++.....|.|++.|. ...++..++.|+
T Consensus 133 ~~~~--~~~~~~~-~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~-----------------~~~~~~~~~~Ea 192 (299)
T 1vpd_A 133 IDGT--LSVMVGG-DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQV-----------------IVALNIAAMSEA 192 (299)
T ss_dssp HHTC--EEEEEES-CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred hcCC--EEEEeCC-CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHH-----------------HHHHHHHHHHHH
Confidence 1232 2344455 7889999999999999998888777777787766554 456778999999
Q ss_pred HHHHHHhcCCCCccchhcccCCcceeecccCccc-HHHHHHhhhccCCCCHHHHHHHHhcCCeeeh-HHHHHHHHHHHHH
Q 014757 296 RAFSKLLFSSVKDSTFFESCGVADLITTCLGGRN-RKVAEAFAKNEGKRSFDDLEAEMLQGQKLQG-VSTAREVYEVLSH 373 (419)
Q Consensus 296 ~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn-~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg-~~~~~~v~~~a~~ 373 (419)
.+++++.| ++++++.+....+.. .+.. ......+.+ ++ ++ .|..++. .++++.+++++++
T Consensus 193 ~~l~~~~G--~~~~~~~~~~~~~~~-----~s~~~~~~~~~~l~-~~-~~---------~g~~~~~~~kd~~~~~~~a~~ 254 (299)
T 1vpd_A 193 LTLATKAG--VNPDLVYQAIRGGLA-----GSTVLDAKAPMVMD-RN-FK---------PGFRIDLHIKDLANALDTSHG 254 (299)
T ss_dssp HHHHHHTT--CCHHHHHHHHTTSTT-----CCHHHHHHHHHHHT-TC-CC---------CSSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHccCC-----CCHHHHHhhhHhhc-CC-CC---------CCCChHHHHHHHHHHHHHHHH
Confidence 99999994 888887765433321 1100 011222222 10 11 1222222 4689999999999
Q ss_pred cCCCcCCcHHHHHHHHHh-------CCCCHHHHHHHHhc
Q 014757 374 RGWLELFPLFATVHEICV-------GHLPPSAIVEYSER 405 (419)
Q Consensus 374 ~gv~~~~P~~~~~~~~l~-------~~~~~~~~~~~~~~ 405 (419)
+|+ ++|+++.++++++ ++.|..+++++++.
T Consensus 255 ~gv--~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (299)
T 1vpd_A 255 VGA--QLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 291 (299)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred cCC--CChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 999 9999999999984 68889999998875
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=197.01 Aligned_cols=276 Identities=11% Similarity=0.050 Sum_probs=192.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
...+|||+|||+|.||..+|..|+++| ++|++|+|++++ ++.+.+.| +..+++
T Consensus 28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G-------~~V~~~dr~~~~------~~~l~~~g--------------~~~~~~ 80 (320)
T 4dll_A 28 DPYARKITFLGTGSMGLPMARRLCEAG-------YALQVWNRTPAR------AASLAALG--------------ATIHEQ 80 (320)
T ss_dssp -CCCSEEEEECCTTTHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHTTT--------------CEEESS
T ss_pred ccCCCEEEEECccHHHHHHHHHHHhCC-------CeEEEEcCCHHH------HHHHHHCC--------------CEeeCC
Confidence 345689999999999999999999999 999999998765 56666543 356788
Q ss_pred HHHHhcCCCEEEEccCc-chHHHHHH--HHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce---EEEeCcch
Q 014757 138 LENAVKDANMLVFVTPH-QFMEGICK--RLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC---CVLMGANI 211 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~-~~~~~vl~--~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~---~v~~gp~~ 211 (419)
+++++.++|+||+|||+ ..++.++. ++.+.+.++++||+++++-.. +.+.+.+.+.+. |..+ ++..+|..
T Consensus 81 ~~e~~~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~---~~~~~~~~~~~~-g~~~~~~pv~g~~~~ 156 (320)
T 4dll_A 81 ARAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPR---EARDHAARLGAL-GIAHLDTPVSGGTVG 156 (320)
T ss_dssp HHHHHTTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHH---HHHHHHHHHHHT-TCEEEECCEECHHHH
T ss_pred HHHHHhcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHH---HHHHHHHHHHHc-CCEEEeCCCcCCHhH
Confidence 88889999999999996 68888887 778888899999998864321 122333333332 3321 22233322
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHH
Q 014757 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIG 291 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~ 291 (419)
+. .|. ..++.++ +.+.+++++++|+.. .++.+.++....++.|.+.|. .......+
T Consensus 157 a~---~g~--l~i~~gg-~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~-----------------~~~~~~~~ 212 (320)
T 4dll_A 157 AE---QGT--LVIMAGG-KPADFERSLPLLKVF-GRATHVGPHGSGQLTKLANQM-----------------IVGITIGA 212 (320)
T ss_dssp HH---HTC--EEEEEES-CHHHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHH-----------------HHHHHHHH
T ss_pred Hh---cCC--eeEEeCC-CHHHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHH-----------------HHHHHHHH
Confidence 22 343 2345555 788999999999887 677776666556666655554 44567788
Q ss_pred HHHHHHHHHHhcCCCCccchhcccCCcceeecccCccc-HHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHH
Q 014757 292 LREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRN-RKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEV 370 (419)
Q Consensus 292 ~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn-~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~ 370 (419)
++|+..++++. |++++++.+....+. ..+.. ...+..+.. ++ +.... ......||++.++++
T Consensus 213 ~~Ea~~l~~~~--G~d~~~~~~~~~~~~-----~~s~~~~~~~~~~l~-~~-~~~gf--------~~~~~~KDl~~~~~~ 275 (320)
T 4dll_A 213 VAEALLFATKG--GADMAKVKEAITGGF-----ADSRVLQLHGQRMVE-RD-FAPRA--------RLSIQLKDMRNALAT 275 (320)
T ss_dssp HHHHHHHHHHT--SCCHHHHHHHHTTST-----TCBHHHHTHHHHHHT-TC-CCCSS--------BHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHccc-----ccCHHHHHhhhhhcc-CC-CCCcc--------cHHHHHHHHHHHHHH
Confidence 99999999999 589988877533221 01111 112344443 21 22110 122347899999999
Q ss_pred HHHcCCCcCCcHHHHHHHHHh-------CCCCHHHHHHHHhcCC
Q 014757 371 LSHRGWLELFPLFATVHEICV-------GHLPPSAIVEYSERKP 407 (419)
Q Consensus 371 a~~~gv~~~~P~~~~~~~~l~-------~~~~~~~~~~~~~~~~ 407 (419)
|++.|+ ++|+++.+.+++. ++.|.+++++++++..
T Consensus 276 a~~~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 317 (320)
T 4dll_A 276 AQEIGF--DAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRN 317 (320)
T ss_dssp HHHTTC--CCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC-
T ss_pred HHHcCC--CChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHhc
Confidence 999999 9999999999883 6789999999998743
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-23 Score=206.61 Aligned_cols=301 Identities=13% Similarity=0.052 Sum_probs=178.8
Q ss_pred cCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEe---cCCCCCCcchHHHH-HHhcCcC--CccCCC--CccCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWV---FEETLPSGEKLTDV-INRTNEN--VKYLPG--IKLGKN 131 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~---r~~~~~~~~~l~~~-i~~~g~~--~~~~~~--~~l~~~ 131 (419)
||||+|||+|+||+++|..|++ +| ++|++|+ |+++. .+. +++.+.. ..+.++ ...+..
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G-------~~V~~~~~~~r~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~ 68 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDG-------VEVRVLTLFADEAER------WTKALGADELTVIVNEKDGTQTEVKSR 68 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTT-------EEEEEECCSTTHHHH------HHHHHTTSCEEEEEECSSSCEEEEEEC
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-------CEEEEEeCCCCcHHH------HHHHHhhccceeeeecCCCccceeecc
Confidence 4799999999999999999998 59 9999999 55433 455 4443321 112222 122222
Q ss_pred eE-ecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhH-----h-C---C
Q 014757 132 VV-ADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQ-----L-G---V 201 (419)
Q Consensus 132 i~-~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~-----~-g---~ 201 (419)
+. +++++++++.++|+||+|||+..++++++++.+.++++++|++++++.+.+ ....+.+.+. + + .
T Consensus 69 ~~~~~~~~~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G~~----~~~~~~l~~~~~~~v~~~~~~~ 144 (404)
T 3c7a_A 69 PKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFE----FQCRDILGDKAAAVSMMSFETL 144 (404)
T ss_dssp CSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTTHH----HHHHHHHGGGGGTSEEEEESSC
T ss_pred ceEEeCCHHHHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCccHH----HHHHHHHHhcCCCeEEEEecCc
Confidence 33 667888888899999999999999999999999999999999954433311 1111233321 1 1 1
Q ss_pred ce-EEEeCcchHHHHHhcCceeEEEeec-----CCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhh
Q 014757 202 SC-CVLMGANIANEIAVEKFSEATVGYR-----DNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVD 275 (419)
Q Consensus 202 ~~-~v~~gp~~a~e~~~g~~~~~~~~~~-----~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~ 275 (419)
+. ..+.+|+++.++..+. ..+.++.. ...+..+.+++++... .+.+++|+.+.+|.. |+++++.+...
T Consensus 145 ~~~~~~~gpg~~v~~~~~~-~~~~~g~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~di~~~~l~~---N~~~~~~~~l~ 218 (404)
T 3c7a_A 145 PWACRIKEFGRKVEVLGTK-SVLAASLIKGTAKTVDPLSTLQMLHGAEP--VFRLAKHFLEMLIMS---YSFVHPAILFG 218 (404)
T ss_dssp SEEEEEEETTTEEEEEEEC-SEEEEEEECCSSCCSCHHHHHHHHHCSSS--EEEECSCHHHHHHTT---CTTHHHHHHHH
T ss_pred hHhhcccCCCcEEEEEEEC-ceEEEEEccCCcchHHHHHHHHHHhCCCC--ceeEcCCEeeeeecC---CceeccHHHHH
Confidence 12 4456677433322221 11223221 1234555566665432 255789999888863 65544444331
Q ss_pred cC------C------CCc---cHHHHHHHHHHHHHHHHHHHh-----cCCCCccchhcccCCcceeecccCc-----ccH
Q 014757 276 GL------E------MGN---NTKAAIMRIGLREMRAFSKLL-----FSSVKDSTFFESCGVADLITTCLGG-----RNR 330 (419)
Q Consensus 276 ~~------~------~~~---n~~~~l~~~~~~E~~~la~a~-----g~g~~~~~~~~~~~~~d~~~t~~~~-----rn~ 330 (419)
+. . ++. +....++.++++|+.++++++ | ++++++ .+++|.+.++... .+.
T Consensus 219 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~E~~~va~a~~~~~~G--~~~~~~---~~~~d~~~~~~~~~~~~~~s~ 293 (404)
T 3c7a_A 219 RWGSWDGKPVPEAPLFYQGIDQATADMLTACSNECKDVANAIMAACPG--NDLSDV---KDIYQWYLEYYHEDIQDDHDL 293 (404)
T ss_dssp HHTTCCSCCBSSCCBSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSTT--CCCTTC---CCHHHHHHHHSTTTBSCCSSH
T ss_pred HHHhhhcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcccC---CCHHHHHHHhCCCccCChhhH
Confidence 11 1 333 256789999999999999999 8 455443 2333444444321 111
Q ss_pred -HHHHHhhh-cc--CCCCHHHHH--HHHhcCCeee-hHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHh
Q 014757 331 -KVAEAFAK-NE--GKRSFDDLE--AEMLQGQKLQ-GVSTAREVYEVLSHRGWLELFPLFATVHEICV 391 (419)
Q Consensus 331 -~~g~~l~~-~g--~~~~~~~~~--~~~~~g~~~E-g~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~ 391 (419)
.+-+.... .+ +++...++. ..+..++.+| .+..++.++++|+++|+ ++|+++.+|++++
T Consensus 294 ~~~~~~~~~~~d~~~P~~~te~~~~~d~~~r~~~Edv~~~~~~v~~la~~~gV--~tP~~~~l~~l~~ 359 (404)
T 3c7a_A 294 YHAITTNKSYKGLVHPVKAVDGGVAPDFGNRYLTEDIPMGMIVFKGVAIAAGV--AIPSNDKLIMWAQ 359 (404)
T ss_dssp HHHHHTBGGGTTCBCCEEEETTEEEECCCSSTTTTTTTTTHHHHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred HHHHHhhhhhccCCCCCCCcCCCccCCccccccccccccchHHHHHHHHHhCC--CCchHHHHHHHHH
Confidence 11111100 00 000000000 0001355778 44699999999999999 9999999999975
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=189.95 Aligned_cols=260 Identities=10% Similarity=0.014 Sum_probs=178.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+|||+|||+|.||..+|..|+++| ++|++|+|++++ ++.+.+.| ++.++++++
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G-------~~V~~~dr~~~~------~~~~~~~g--------------~~~~~~~~~ 67 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWP-------GGVTVYDIRIEA------MTPLAEAG--------------ATLADSVAD 67 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTST-------TCEEEECSSTTT------SHHHHHTT--------------CEECSSHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC-------CeEEEEeCCHHH------HHHHHHCC--------------CEEcCCHHH
Confidence 579999999999999999999999 999999999887 56676644 456788988
Q ss_pred HhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHHHH
Q 014757 141 AVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANEIA 216 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e~~ 216 (419)
++. +|+||+|||+ .+++++++++.+.++++++||++++.... +...+.+.+.+. |.. .++..+|..+.
T Consensus 68 ~~~-aDvvi~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st~~~~---~~~~~~~~~~~~-g~~~~~~pv~g~~~~a~--- 139 (296)
T 3qha_A 68 VAA-ADLIHITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDT---TAVELARDLKAR-DIHIVDAPVSGGAAAAA--- 139 (296)
T ss_dssp HTT-SSEEEECCSSHHHHHHHHHHHHTTCCTTCEEEECSCCCHH---HHHHHHHHHGGG-TCEEEECCEESCHHHHH---
T ss_pred HHh-CCEEEEECCChHHHHHHHHHHHHhcCCCCEEEEeCCCCHH---HHHHHHHHHHHc-CCEEEeCCCcCCHHHHh---
Confidence 888 9999999996 68899999999999999999998763221 112233333321 332 23344444333
Q ss_pred hcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHH
Q 014757 217 VEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMR 296 (419)
Q Consensus 217 ~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~ 296 (419)
.+. ..++.++ +.+.+++++++|+..+.++.+..+....++.|+..| ........+++|+.
T Consensus 140 ~g~--l~~~~gg-~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N-----------------~~~~~~~~~~~E~~ 199 (296)
T 3qha_A 140 RGE--LATMVGA-DREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARN-----------------MLTFTSYAAACEAM 199 (296)
T ss_dssp HTC--EEEEEEC-CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred cCC--ccEEecC-CHHHHHHHHHHHHHHcCCeEEcCChhHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 343 2355555 788999999999988888877777655666665544 44556778899999
Q ss_pred HHHHHhcCCCCccch------hcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCe-eehHHHHHHHHH
Q 014757 297 AFSKLLFSSVKDSTF------FESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQK-LQGVSTAREVYE 369 (419)
Q Consensus 297 ~la~a~g~g~~~~~~------~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~-~Eg~~~~~~v~~ 369 (419)
.++++. |++++++ .+....+. ..+...+ +..+.. + +.+.+-.. +.. ....||.+++.+
T Consensus 200 ~l~~~~--G~d~~~~~~~~~~~~~i~~~~--~~s~~~~----~~~~~~-~--~~~~f~~~----~~~~~~~~KD~~~~~~ 264 (296)
T 3qha_A 200 KLAEAA--GLDLQALGRVVRHTDALTGGP--GAIMVRD----NMKDLE-P--DNFLYQPF----LHTRGLGEKDLSLALA 264 (296)
T ss_dssp HHHHHT--TCCHHHHHHHHHHHHHHHCCG--GGGCCCS----SCSCCC-T--TSTTHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCCHHHHhhhcchHHHHhcCc--ccCHHhh----chhhhh-c--CCCCCchh----hhhhHHHHHHHHHHHH
Confidence 999999 5899988 65321110 0000011 111111 1 11111000 000 234789999999
Q ss_pred HHHHcCCCcCCcHHHHHHHHHhC
Q 014757 370 VLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 370 ~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
+|++.|+ ++|+.+.+++++..
T Consensus 265 ~a~~~g~--~~p~~~~~~~~~~~ 285 (296)
T 3qha_A 265 LGEAVSV--DLPLARLAYEGLAA 285 (296)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHH
T ss_pred HHHHcCC--CChHHHHHHHHHHH
Confidence 9999999 99999999998853
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=193.97 Aligned_cols=272 Identities=10% Similarity=0.022 Sum_probs=184.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+|||+|||+|.||..+|..|+++| ++|++|+|++++ .+.+.+.| +..+.+++
T Consensus 29 ~~~~I~iIG~G~mG~~~a~~l~~~g-------~~V~~~~~~~~~------~~~~~~~g--------------~~~~~~~~ 81 (316)
T 2uyy_A 29 TDKKIGFLGLGLMGSGIVSNLLKMG-------HTVTVWNRTAEK------CDLFIQEG--------------ARLGRTPA 81 (316)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSGGG------GHHHHHTT--------------CEECSCHH
T ss_pred CCCeEEEEcccHHHHHHHHHHHhCC-------CEEEEEeCCHHH------HHHHHHcC--------------CEEcCCHH
Confidence 3589999999999999999999999 899999998776 45565533 23556777
Q ss_pred HHhcCCCEEEEccC-cchHHHHHHHH---hccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcch--HH
Q 014757 140 NAVKDANMLVFVTP-HQFMEGICKRL---VGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANI--AN 213 (419)
Q Consensus 140 ea~~~aDlVilavp-~~~~~~vl~~l---~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~--a~ 213 (419)
+++.++|+||+||| +..++.++..+ .+.+.++++||+++++.... ...+.+.+.+ .+ ..++.+|.. ..
T Consensus 82 ~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~---~~~l~~~~~~-~~--~~~v~~p~~g~~~ 155 (316)
T 2uyy_A 82 EVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT---VTELAQVIVS-RG--GRFLEAPVSGNQQ 155 (316)
T ss_dssp HHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHH---HHHHHHHHHH-TT--CEEEECCEESCHH
T ss_pred HHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHH---HHHHHHHHHH-cC--CEEEEcCccCChh
Confidence 77889999999999 68888888764 36778899999998743211 1222233322 12 233333322 12
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~ 293 (419)
....+. . .++.++ +.+..++++++|+..|.++++.+++....|.|.+.|.+. ..+..++.
T Consensus 156 ~~~~g~-~-~~~~~g-~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~-----------------~~~~~~~~ 215 (316)
T 2uyy_A 156 LSNDGM-L-VILAAG-DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ-----------------GSFMATIA 215 (316)
T ss_dssp HHHHTC-E-EEEEEE-CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHH-----------------HHHHHHHH
T ss_pred HHhhCC-E-EEEeCC-CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHH-----------------HHHHHHHH
Confidence 223343 2 233334 678889999999999999888878777778777666532 12678899
Q ss_pred HHHHHHHHhcCCCCccchhcccCCcceeecccCccc-HHHHHHhhhccCCCCHHHHHHHHhcCCeeeh-HHHHHHHHHHH
Q 014757 294 EMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRN-RKVAEAFAKNEGKRSFDDLEAEMLQGQKLQG-VSTAREVYEVL 371 (419)
Q Consensus 294 E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn-~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg-~~~~~~v~~~a 371 (419)
|+.+++++.| ++++++.+....++ ..+.. ......+.+ ++ ++ .|.+++. .++++.+++++
T Consensus 216 Ea~~la~~~G--~~~~~~~~~~~~~~-----~~s~~~~~~~~~~l~-~~-~~---------~g~~~~~~~kd~~~~~~~a 277 (316)
T 2uyy_A 216 EGLTLAQVTG--QSQQTLLDILNQGQ-----LASIFLDQKCQNILQ-GN-FK---------PDFYLKYIQKDLRLAIALG 277 (316)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHHHST-----TCCHHHHHHHHHHHH-TC-CC---------CSSBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHcCC-----CCCHHHHHhhHHhhc-CC-CC---------CCCcHHHHHHHHHHHHHHH
Confidence 9999999995 78887766432211 00100 011222222 11 11 1344444 78999999999
Q ss_pred HHcCCCcCCcHHHHHHHHHh-------CCCCHHHHHHHHh
Q 014757 372 SHRGWLELFPLFATVHEICV-------GHLPPSAIVEYSE 404 (419)
Q Consensus 372 ~~~gv~~~~P~~~~~~~~l~-------~~~~~~~~~~~~~ 404 (419)
++.|+ ++|++++++++++ ++.|..+++++++
T Consensus 278 ~~~gv--~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~ 315 (316)
T 2uyy_A 278 DAVNH--PTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI 315 (316)
T ss_dssp HHTTC--CCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred HHhCC--CChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 99999 9999999999985 5667666666543
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=189.63 Aligned_cols=271 Identities=13% Similarity=0.104 Sum_probs=186.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+|||+|||+|.||..++..|+++| ++|++|+|++++ .+.+.+.| +..+++++
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~g-------~~V~~~~~~~~~------~~~~~~~g--------------~~~~~~~~ 55 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKEG-------VTVYAFDLMEAN------VAAVVAQG--------------AQACENNQ 55 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHTT-------CEEEEECSSHHH------HHHHHTTT--------------CEECSSHH
T ss_pred CCCEEEEECccHHHHHHHHHHHHCC-------CeEEEEeCCHHH------HHHHHHCC--------------CeecCCHH
Confidence 4689999999999999999999999 899999998765 55665533 34567788
Q ss_pred HHhcCCCEEEEccCc-chHHHHHH---HHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHH-
Q 014757 140 NAVKDANMLVFVTPH-QFMEGICK---RLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANE- 214 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl~---~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e- 214 (419)
+++.++|+||+|||. .+++.++. ++.+.++++++||++++|.... ...+.+.+.+. +.. ++..|....+
T Consensus 56 ~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~---~~~l~~~~~~~-g~~--~~~~p~~~~~~ 129 (301)
T 3cky_A 56 KVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSS---TLKMAKVAAEK-GID--YVDAPVSGGTK 129 (301)
T ss_dssp HHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHH---HHHHHHHHHHT-TCE--EEECCEESHHH
T ss_pred HHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHH---HHHHHHHHHHc-CCe--EEEccCCCCHH
Confidence 878889999999974 67888885 7888888999999999886321 12333433331 322 2223332211
Q ss_pred -HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHH
Q 014757 215 -IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293 (419)
Q Consensus 215 -~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~ 293 (419)
...|.. ..+.++ +.+.+++++++|+..|.++++.++.....|.|++.|. ...++..++.
T Consensus 130 ~a~~g~~--~~~~~g-~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~-----------------~~~~~~~~~~ 189 (301)
T 3cky_A 130 GAEAGTL--TIMVGA-SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNL-----------------LLGCNMASLA 189 (301)
T ss_dssp HHHHTCE--EEEEES-CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred HHHcCCe--EEEECC-CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 122432 334445 7888999999999999888777666666677765553 3456788999
Q ss_pred HHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHH----HhhhccCCCCHHHHHHHHhcCCee-ehHHHHHHHH
Q 014757 294 EMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAE----AFAKNEGKRSFDDLEAEMLQGQKL-QGVSTAREVY 368 (419)
Q Consensus 294 E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~----~l~~~g~~~~~~~~~~~~~~g~~~-Eg~~~~~~v~ 368 (419)
|+.+++++.| ++++++.+...... .....+.. .+.+ .+ ++ .|.++ ...++++.++
T Consensus 190 Ea~~l~~~~G--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~-~~-~~---------~g~~~~~~~kd~~~~~ 249 (301)
T 3cky_A 190 EALVLGVKCG--LKPETMQEIIGKSS-------GRSYAMEAKMEKFIMS-GD-FA---------GGFAMDLQHKDLGLAL 249 (301)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHHTST-------TCBHHHHHHCCCCCCT-CC-CS---------SSSBHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHcCC-------CCCHHHHHhhhhhhhc-CC-CC---------CCccHHHHHHHHHHHH
Confidence 9999999994 78877765432110 00111111 1111 00 11 12222 2356889999
Q ss_pred HHHHHcCCCcCCcHHHHHHHHHh-------CCCCHHHHHHHHhc
Q 014757 369 EVLSHRGWLELFPLFATVHEICV-------GHLPPSAIVEYSER 405 (419)
Q Consensus 369 ~~a~~~gv~~~~P~~~~~~~~l~-------~~~~~~~~~~~~~~ 405 (419)
++++++|+ ++|+++.++++++ ++.|...++++++.
T Consensus 250 ~~a~~~gv--~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (301)
T 3cky_A 250 EAGKEGNV--PLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQ 291 (301)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred HHHHHhCC--CChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 99999999 9999999999984 68889999998876
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=188.61 Aligned_cols=269 Identities=13% Similarity=0.018 Sum_probs=183.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||||+|||+|.||..+|..|++ | ++|++|+|++++ .+.+.+.|. ..++ +++
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-g-------~~V~~~~~~~~~------~~~~~~~g~--------------~~~~-~~~ 51 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-R-------FPTLVWNRTFEK------ALRHQEEFG--------------SEAV-PLE 51 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-T-------SCEEEECSSTHH------HHHHHHHHC--------------CEEC-CGG
T ss_pred CCeEEEEcccHHHHHHHHHHhC-C-------CeEEEEeCCHHH------HHHHHHCCC--------------cccC-HHH
Confidence 5799999999999999999999 9 899999998765 556655432 1223 556
Q ss_pred HhcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcch--HHHHHh
Q 014757 141 AVKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANI--ANEIAV 217 (419)
Q Consensus 141 a~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~--a~e~~~ 217 (419)
++.++|+||+|||+. .++.+++++.+.++++++|++++++.... ...+.+.+.+. + ..++..|.. ......
T Consensus 52 ~~~~~D~vi~~v~~~~~~~~v~~~l~~~l~~~~~vv~~s~~~~~~---~~~l~~~~~~~-g--~~~~~~p~~~~~~~~~~ 125 (289)
T 2cvz_A 52 RVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEA---SRRLAERLREK-G--VTYLDAPVSGGTSGAEA 125 (289)
T ss_dssp GGGGCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHH---HHHHHHHHHTT-T--EEEEECCEESHHHHHHH
T ss_pred HHhCCCEEEEeCCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHH---HHHHHHHHHHc-C--CEEEEecCCCChhHHhh
Confidence 678899999999986 48899999988888999999988753221 12222333221 2 223333422 122234
Q ss_pred cCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHH
Q 014757 218 EKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRA 297 (419)
Q Consensus 218 g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~ 297 (419)
|.. .++.+. +.+..++++++| ..|.++++.++.....|.|...|. ...++..++.|+.+
T Consensus 126 g~~--~~~~~~-~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~-----------------~~~~~~~~~~Ea~~ 184 (289)
T 2cvz_A 126 GTL--TVMLGG-PEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNA-----------------LLAVNLWAAGEGLL 184 (289)
T ss_dssp TCE--EEEEES-CHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred CCe--EEEECC-CHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 432 234445 788899999999 999887777776666776655554 34577899999999
Q ss_pred HHHHhcCCCCccchhcccCCcceeecccCcccH-HHHH-HhhhccCCCCHHHHHHHHhcCCeee-hHHHHHHHHHHHHHc
Q 014757 298 FSKLLFSSVKDSTFFESCGVADLITTCLGGRNR-KVAE-AFAKNEGKRSFDDLEAEMLQGQKLQ-GVSTAREVYEVLSHR 374 (419)
Q Consensus 298 la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~-~~g~-~l~~~g~~~~~~~~~~~~~~g~~~E-g~~~~~~v~~~a~~~ 374 (419)
++++.| ++++++.+....++. .+... .... .+.+ .+ ++ .|.+++ ..++++.++++++++
T Consensus 185 l~~~~G--~~~~~~~~~~~~~~~-----~s~~~~~~~~~~~l~-~~-~~---------~g~~~~~~~kd~~~~~~~a~~~ 246 (289)
T 2cvz_A 185 ALVKQG--VSAEKALEVINASSG-----RSNATENLIPQRVLT-RA-FP---------KTFALGLLVKDLGIAMGVLDGE 246 (289)
T ss_dssp HHHHTT--CCHHHHHHHHTTSTT-----CBHHHHHTHHHHTTT-SC-CC---------CSSBHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcC--cCHHHHHHHHHccCC-----CCHHHHHhccchhhc-CC-CC---------CCcChHHHHHHHHHHHHHHHHc
Confidence 999994 888887765433221 11000 0122 1222 11 11 122232 356889999999999
Q ss_pred CCCcCCcHHHHHHHHHh-------CCCCHHHHHHHHhc
Q 014757 375 GWLELFPLFATVHEICV-------GHLPPSAIVEYSER 405 (419)
Q Consensus 375 gv~~~~P~~~~~~~~l~-------~~~~~~~~~~~~~~ 405 (419)
|+ ++|++++++++++ ++.|..+++++++.
T Consensus 247 gv--~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~ 282 (289)
T 2cvz_A 247 KA--PSPLLRLAREVYEMAKRELGPDADHVEALRLLER 282 (289)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred CC--CChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 99 9999999999884 68888999998865
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=185.84 Aligned_cols=273 Identities=12% Similarity=0.058 Sum_probs=186.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
+||||+|||+|.||..+|..|+++| ++|++|+ ++++ .+.+.+.| +..+++++
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g-------~~V~~~~-~~~~------~~~~~~~g--------------~~~~~~~~ 53 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAG-------HQLHVTT-IGPV------ADELLSLG--------------AVNVETAR 53 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTT-------CEEEECC-SSCC------CHHHHTTT--------------CBCCSSHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCC-------CEEEEEc-CHHH------HHHHHHcC--------------CcccCCHH
Confidence 3589999999999999999999999 8999999 8776 46666543 23456787
Q ss_pred HHhcCCCEEEEccCcc-hHHHHHH---HHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHH--
Q 014757 140 NAVKDANMLVFVTPHQ-FMEGICK---RLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIAN-- 213 (419)
Q Consensus 140 ea~~~aDlVilavp~~-~~~~vl~---~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~-- 213 (419)
+++.++|+||+|||.. +++.++. ++.+.++++++||++++|.... ...+.+.+.+ .+ ..++..|....
T Consensus 54 ~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~---~~~l~~~~~~-~g--~~~~~~p~~~~~~ 127 (295)
T 1yb4_A 54 QVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIE---TKRFAQRVNE-MG--ADYLDAPVSGGEI 127 (295)
T ss_dssp HHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHH---HHHHHHHHHT-TT--EEEEECCEESHHH
T ss_pred HHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHH---HHHHHHHHHH-cC--CeEEEccCCCCHH
Confidence 8788999999999875 5888887 7888888899999998874221 1223333332 12 22223332211
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLR 293 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~ 293 (419)
....|.. .++.++ +.+..++++++|+..|.++++.++.....|.|++.|. ...++..++.
T Consensus 128 ~a~~g~~--~~~~~~-~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~-----------------~~~~~~~~~~ 187 (295)
T 1yb4_A 128 GAREGTL--SIMVGG-EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQI-----------------IVALNIEAVS 187 (295)
T ss_dssp HHHHTCE--EEEEES-CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHH-----------------HHHHHHHHHH
T ss_pred HHHcCCe--EEEECC-CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 1123432 234445 7888999999999999888877777677787776665 2355678899
Q ss_pred HHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCee-ehHHHHHHHHHHHH
Q 014757 294 EMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKL-QGVSTAREVYEVLS 372 (419)
Q Consensus 294 E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~-Eg~~~~~~v~~~a~ 372 (419)
|+.+++++.| ++++++.+....+. .++...++ ....+.. .+ .+ .|..+ ...+|.+.++++++
T Consensus 188 E~~~l~~~~G--~~~~~~~~~~~~~~--~~s~~~~~--~~~~~~~-~~-~~---------~g~~~~~~~kd~~~~~~~a~ 250 (295)
T 1yb4_A 188 EALVFASKAG--ADPVRVRQALMGGF--ASSRILEV--HGERMIN-RT-FE---------PGFKIALHQKDLNLALQSAK 250 (295)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHTSSS--SCBHHHHH--HHHHHHT-TC-CC---------CSSBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHcCC--CCCHHHHH--hhHHHhc-CC-CC---------CCCchHHHHHHHHHHHHHHH
Confidence 9999999995 78887776543332 11100111 1122222 10 11 12222 34678899999999
Q ss_pred HcCCCcCCcHHHHHHHHHh-------CCCCHHHHHHHHhc
Q 014757 373 HRGWLELFPLFATVHEICV-------GHLPPSAIVEYSER 405 (419)
Q Consensus 373 ~~gv~~~~P~~~~~~~~l~-------~~~~~~~~~~~~~~ 405 (419)
+.|+ ++|++++++++++ ++.|...++++++.
T Consensus 251 ~~g~--~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (295)
T 1yb4_A 251 ALAL--NLPNTATCQELFNTCAANGGSQLDHSAMVQALEL 288 (295)
T ss_dssp HTTC--CCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred HcCC--CChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 9999 9999999999884 67788899988865
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=188.91 Aligned_cols=270 Identities=12% Similarity=0.039 Sum_probs=179.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||+++|..|+++| ++|++|+|++++ .+.+.+.| +..+++++++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g-------~~V~~~~~~~~~------~~~~~~~g--------------~~~~~~~~~~ 53 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHG-------YPLIIYDVFPDA------CKEFQDAG--------------EQVVSSPADV 53 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTT-------CCEEEECSSTHH------HHHHHTTT--------------CEECSSHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcC--------------CeecCCHHHH
Confidence 68999999999999999999999 899999998765 56666543 3456788887
Q ss_pred hcCCCEEEEccC-cchHHHHHHHH---hccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce---EEEeCcchHHH
Q 014757 142 VKDANMLVFVTP-HQFMEGICKRL---VGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC---CVLMGANIANE 214 (419)
Q Consensus 142 ~~~aDlVilavp-~~~~~~vl~~l---~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~---~v~~gp~~a~e 214 (419)
+.++|+||+||| +.+++.++.++ .+.+++++++|+ ++|+.+.. ...+.+.+.+. +..+ ++..||..+.
T Consensus 54 ~~~~Dvvi~~vp~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~--~~~~~~~~~~~-g~~~~~~p~~~g~~~a~- 128 (296)
T 2gf2_A 54 AEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLID-SSTIDPAV--SKELAKEVEKM-GAVFMDAPVSGGVGAAR- 128 (296)
T ss_dssp HHHCSEEEECCSSHHHHHHHHHSTTSGGGTCCTTCEEEE-CSCCCHHH--HHHHHHHHHHT-TCEEEECCEESHHHHHH-
T ss_pred HhcCCEEEEeCCCHHHHHHHHhCchhHHhcCCCCCEEEE-CCCCCHHH--HHHHHHHHHHc-CCEEEEcCCCCChhHHh-
Confidence 889999999996 57888888764 456778999999 77776521 12222333331 3221 2233332221
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHH
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLRE 294 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E 294 (419)
.+. ..++.+. +.+..++++++|+..|.+++...+.-...+.| +.+|....++..++.|
T Consensus 129 --~~~--~~~~~~~-~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~k-----------------l~~n~~~~~~~~~~~E 186 (296)
T 2gf2_A 129 --SGN--LTFMVGG-VEDEFAAAQELLGCMGSNVVYCGAVGTGQAAK-----------------ICNNMLLAISMIGTAE 186 (296)
T ss_dssp --HTC--EEEEEES-CGGGHHHHHHHHTTTEEEEEEEESTTHHHHHH-----------------HHHHHHHHHHHHHHHH
T ss_pred --cCc--EEEEeCC-CHHHHHHHHHHHHHHcCCeEEeCCccHHHHHH-----------------HHHHHHHHHHHHHHHH
Confidence 233 2344445 67888999999999998877654432222222 2345555677889999
Q ss_pred HHHHHHHhcCCCCccchhcccCCcc---eeecccC---c--ccHHHHHHhhhccCCCCHHHHHHHHhcCCeee-hHHHHH
Q 014757 295 MRAFSKLLFSSVKDSTFFESCGVAD---LITTCLG---G--RNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQ-GVSTAR 365 (419)
Q Consensus 295 ~~~la~a~g~g~~~~~~~~~~~~~d---~~~t~~~---~--rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~E-g~~~~~ 365 (419)
+.+++++.| ++++++.+....++ ...++.. + +....++.+. .|...+ ..|+++
T Consensus 187 a~~~~~~~G--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~----------------~g~~~~~~~kd~~ 248 (296)
T 2gf2_A 187 AMNLGIRLG--LDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQ----------------GGFGTTLMAKDLG 248 (296)
T ss_dssp HHHHHHHTT--CCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTC----------------SSSBHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCC----------------CCCchHHHHHHHH
Confidence 999999995 78887766432221 0000000 0 0000000111 122222 368999
Q ss_pred HHHHHHHHcCCCcCCcHHHHHHHHHh-------CCCCHHHHHHHHhc
Q 014757 366 EVYEVLSHRGWLELFPLFATVHEICV-------GHLPPSAIVEYSER 405 (419)
Q Consensus 366 ~v~~~a~~~gv~~~~P~~~~~~~~l~-------~~~~~~~~~~~~~~ 405 (419)
.++++|+++|+ ++|+++.++++++ ++.|.+.++++++.
T Consensus 249 ~~~~~a~~~gv--~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 293 (296)
T 2gf2_A 249 LAQDSATSTKS--PILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLRE 293 (296)
T ss_dssp HHHHHHHHTTC--CCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSC
T ss_pred HHHHHHHHcCC--CChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 99999999999 9999999999985 68888999998864
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=199.14 Aligned_cols=282 Identities=15% Similarity=0.143 Sum_probs=201.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc--c-----CCCeEe
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK--L-----GKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~--l-----~~~i~~ 134 (419)
|||+|||+|.||+++|..|+++| ++|++|+|++++ ++.+++.+. +.+.++.. + ..++.+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G-------~~V~~~d~~~~~------~~~l~~~~~-~i~e~~l~~~~~~~~~~g~l~~ 66 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARG-------HEVIGVDVSSTK------IDLINQGKS-PIVEPGLEALLQQGRQTGRLSG 66 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHTTCC-SSCCTTHHHHHHHHHHTTCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHhCCCC-CcCCCCHHHHHHhhcccCceEE
Confidence 69999999999999999999999 999999998776 677776442 22333321 1 224778
Q ss_pred cCCHHHHhcCCCEEEEccCcch----------HHHHHHHHhccCCC---CcEEEEeecCcccCCCC-cccHHHHHHhHhC
Q 014757 135 DPDLENAVKDANMLVFVTPHQF----------MEGICKRLVGKVNG---DVEAISLIKGMEVKREG-PCMISTLISEQLG 200 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~----------~~~vl~~l~~~l~~---~tiivs~~nGi~~~~~~-~~~~~~~i~~~~g 200 (419)
++++++++.++|+||+|||+.. ++++++++.+.+++ +++||..++ +.+. + .+.+.+.+++..+
T Consensus 67 t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~St-v~~g--~t~~~l~~~l~~~~g 143 (436)
T 1mv8_A 67 TTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST-VLPG--TVNNVVIPLIEDCSG 143 (436)
T ss_dssp ESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC-CCTT--HHHHTHHHHHHHHHS
T ss_pred eCCHHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCC-cCCC--chHHHHHHHHHHhcC
Confidence 8899888899999999999855 99999999998888 899887652 4331 2 3455566665434
Q ss_pred ----CceEEEeCcchHHHHH----hcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHH
Q 014757 201 ----VSCCVLMGANIANEIA----VEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAG 272 (419)
Q Consensus 201 ----~~~~v~~gp~~a~e~~----~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g 272 (419)
..+.+..+|.++.+.. ...+..+++++. +.+..++++++++..+.++.. .|+...+|.|++.|.
T Consensus 144 ~~~~~~~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~-~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~------ 215 (436)
T 1mv8_A 144 KKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGEL-DKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNV------ 215 (436)
T ss_dssp CCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEES-SHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHH------
T ss_pred cccCCcEEEEECcccccccccchhccCCCEEEEEcC-CHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHH------
Confidence 2456777877653211 123345666665 688889999999998887766 789899999877665
Q ss_pred hhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHH
Q 014757 273 FVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEM 352 (419)
Q Consensus 273 ~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~ 352 (419)
..++....++|+..++++.| ++++++.+..+....+. .+++++..|..++ | .++
T Consensus 216 -----------~~a~~ia~~nE~~~l~~~~G--id~~~v~~~~~~~~r~~--~~~~~~~pg~g~g--g--~~~------- 269 (436)
T 1mv8_A 216 -----------WHAAKVTFANEIGNIAKAVG--VDGREVMDVICQDHKLN--LSRYYMRPGFAFG--G--SCL------- 269 (436)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHTTCTTTT--TSSTTCSCCSCCC--S--SSH-------
T ss_pred -----------HHHHHHHHHHHHHHHHHHhC--CCHHHHHHHhcCCCCCC--CcccCCCCccccc--C--cCc-------
Confidence 34556788999999999994 88888776554321110 0012222221111 1 221
Q ss_pred hcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 353 LQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 353 ~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
.+|.++++++|+++|+ ++|++++++++ ++..|..+++.+.+.
T Consensus 270 --------~kD~~~l~~~a~~~g~--~~pl~~~v~~i--n~~~~~~~~~~~~~~ 311 (436)
T 1mv8_A 270 --------PKDVRALTYRASQLDV--EHPMLGSLMRS--NSNQVQKAFDLITSH 311 (436)
T ss_dssp --------HHHHHHHHHHHHHTTC--CCTTGGGHHHH--HHHHHHHHHHHHTTS
T ss_pred --------HhhHHHHHHHHHHcCC--CcHHHHHHHHH--HhHhHHHHHHHHHHh
Confidence 4678999999999999 99999999999 555788888888664
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=200.08 Aligned_cols=283 Identities=10% Similarity=0.073 Sum_probs=201.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHc-CCCCCCCCc-eEEEEecCCC----CCCcchHHHHHHhcCcCCc--cCCCCc---
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASN-TLRLSSFHD-EVRMWVFEET----LPSGEKLTDVINRTNENVK--YLPGIK--- 127 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~-~V~l~~r~~~----~~~~~~l~~~i~~~g~~~~--~~~~~~--- 127 (419)
+.+|||+|||+|.||+++|..|+++ | + +|++||++++ + ++.+++.. .+. +.++..
T Consensus 16 ~~~mkIaVIGlG~mG~~lA~~la~~~G-------~~~V~~~D~~~~~~~~k------v~~l~~g~-~~i~~~e~gl~~l~ 81 (478)
T 3g79_A 16 GPIKKIGVLGMGYVGIPAAVLFADAPC-------FEKVLGFQRNSKSSGYK------IEMLNRGE-SPLKGEEPGLEELI 81 (478)
T ss_dssp CSCCEEEEECCSTTHHHHHHHHHHSTT-------CCEEEEECCCCTTTTTH------HHHHTTTC-CCSSCCGGGHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHhCC-------CCeEEEEECChhHhHHH------HHHHHhcC-CCccccCCCHHHHH
Confidence 5678999999999999999999999 9 9 9999999988 6 78887633 222 333321
Q ss_pred ----cCCCeEecCCHHHHhcCCCEEEEccCcch------------HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccH
Q 014757 128 ----LGKNVVADPDLENAVKDANMLVFVTPHQF------------MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMI 191 (419)
Q Consensus 128 ----l~~~i~~~~~~~ea~~~aDlVilavp~~~------------~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~ 191 (419)
.+.++.++++ .+++.+||+||+|||+.. +..+.+.+.++++++++||..+ ++.+. +.+.+
T Consensus 82 ~~~~~~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~pg--tt~~v 157 (478)
T 3g79_A 82 GKVVKAGKFECTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLES-TITPG--TTEGM 157 (478)
T ss_dssp HHHHHTTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECS-CCCTT--TTTTH
T ss_pred HhhcccCCeEEeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeC-CCChH--HHHHH
Confidence 1456788888 567899999999999752 7788889999999999988776 57654 45566
Q ss_pred HH-HHHhHhC----CceEEEeCcchHHHHH----hcCceeEEEeecCCHHHHHHHHHHhCCC-CcEEEEcCcHHHHHHHH
Q 014757 192 ST-LISEQLG----VSCCVLMGANIANEIA----VEKFSEATVGYRDNREIAEKWVQLFSTP-YFMVTAVQDVEGVELCG 261 (419)
Q Consensus 192 ~~-~i~~~~g----~~~~v~~gp~~a~e~~----~g~~~~~~~~~~~~~~~~~~l~~ll~~~-g~~~~~~~di~~~e~~~ 261 (419)
.+ ++++..| .++.+.++|.++.+.. ...+.. ++++. +.+.+++++++|+.. +..++...++...|..|
T Consensus 158 ~~~ile~~~g~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~-Iv~G~-~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~K 235 (478)
T 3g79_A 158 AKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREHDR-IVGGI-DEASTKRAVELYSPVLTVGQVIPMSATAAEVTK 235 (478)
T ss_dssp HHHHHHHHHCCCBTTTBEEEECCCCCCTTSHHHHHHHSCE-EEEES-SHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHH
T ss_pred HHHHHHHhcCCCcCCceeEEeCCccCCccchhhhhcCCcE-EEEeC-CHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHH
Confidence 54 4434445 2468888887643211 112333 45666 788889999999987 56667778888888888
Q ss_pred HHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccC
Q 014757 262 TLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEG 341 (419)
Q Consensus 262 al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~ 341 (419)
++.|. ..+.....++|+..+|+++ |+|++++.+..+..... -...+.+..|..++ |
T Consensus 236 l~~N~-----------------~~a~~Ia~~nE~~~l~e~~--GiD~~~v~~~~~~~~~~--ri~~~~~~PG~G~G--G- 291 (478)
T 3g79_A 236 TAENT-----------------FRDLQIAAINQLALYCEAM--GINVYDVRTGVDSLKGE--GITRAVLWPGAGVG--G- 291 (478)
T ss_dssp HHHHH-----------------HHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHTSCCS--SSCCCCCCCCSCCC--S-
T ss_pred HHHHH-----------------HHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHCCCchh--hhccccCCCCCCcc--h-
Confidence 77664 4556788999999999999 58998887754432100 00111111121111 1
Q ss_pred CCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcC-------CcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014757 342 KRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLEL-------FPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 342 ~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~-------~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
.+ ..||.+++...|++.|+ + +|+.+++.++ ++..|..+++.+.+
T Consensus 292 -~c---------------~~KD~~~l~~~a~~~g~--~~~~~~~~~~li~~~~~i--N~~~~~~~~~~i~~ 342 (478)
T 3g79_A 292 -HC---------------LTKDTYHLERGVKIGRG--ELDYPEGADSIYVLARKV--NDFMPAHMYNLTVA 342 (478)
T ss_dssp -SH---------------HHHHHHHHHHHHTTSSC--CCCCCSSCCCHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred -hh---------------HHHHHHHHHHHHHHcCC--CcccccchhHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 22 26799999999999997 5 8999999999 44467777777664
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=184.97 Aligned_cols=274 Identities=14% Similarity=0.090 Sum_probs=182.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCC-cchHHHHHHhcCcCCccCCCCccCCCeEecC-CH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPS-GEKLTDVINRTNENVKYLPGIKLGKNVVADP-DL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~-~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~-~~ 138 (419)
+|||+|||+|.||.++|..|+++|. ++|++|+|+++..+ .++..+.+.+.| + ++ ++
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~------~~V~~~dr~~~~~~~~~~~~~~~~~~g--------------~--~~~s~ 81 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNA------ARLAAYDLRFNDPAASGALRARAAELG--------------V--EPLDD 81 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC------SEEEEECGGGGCTTTHHHHHHHHHHTT--------------C--EEESS
T ss_pred CCeEEEECccHHHHHHHHHHHHcCC------CeEEEEeCCCccccchHHHHHHHHHCC--------------C--CCCCH
Confidence 4799999999999999999999982 69999999873200 112234444332 2 34 66
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce--EEEeCcchHHHHH
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC--CVLMGANIANEIA 216 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~--~v~~gp~~a~e~~ 216 (419)
++++.++|+||+|||+....+.++++.+.++++++||++++ +.+. +...+.+.+.+. |..+ ..+.||..+.
T Consensus 82 ~e~~~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st-~~p~--~~~~~~~~l~~~-g~~~~d~pv~g~~~a~--- 154 (317)
T 4ezb_A 82 VAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNS-VGPD--TKALAAGAIATG-KGSFVEGAVMARVPPY--- 154 (317)
T ss_dssp GGGGGGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCS-CCHH--HHHHHHHHHHTS-SCEEEEEEECSCSTTT---
T ss_pred HHHHhcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCC-CCHH--HHHHHHHHHHHc-CCeEEeccCCCCchhh---
Confidence 77788999999999998888888999999999999999874 4321 123334444332 4332 3456665433
Q ss_pred hcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc-HHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHH
Q 014757 217 VEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD-VEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREM 295 (419)
Q Consensus 217 ~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d-i~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~ 295 (419)
.+.++ +++++. + + ++++++|+..|.++...++ +...++.|+..|. .......+++|+
T Consensus 155 ~g~l~-i~vgg~-~-~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~-----------------~~~~~~~~~~E~ 212 (317)
T 4ezb_A 155 AEKVP-ILVAGR-R-A--VEVAERLNALGMNLEAVGETPGQASSLKMIRSV-----------------MIKGVEALLIEA 212 (317)
T ss_dssp GGGSE-EEEEST-T-H--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred cCCEE-EEEeCC-h-H--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHH-----------------HHHHHHHHHHHH
Confidence 34443 444443 3 3 8899999999988877766 7666776766554 445678899999
Q ss_pred HHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcC
Q 014757 296 RAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRG 375 (419)
Q Consensus 296 ~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~g 375 (419)
..++++.| ++++.+..+.+.. .+......+..+.. + .+. .... ..||++.+++.|++.|
T Consensus 213 ~~la~~~G--id~~~~~~l~~~~------~~~~~~~~~~~~~~-~---~~~-~g~~--------~~KDl~~~~~~a~~~g 271 (317)
T 4ezb_A 213 LSSAERAG--VTERILDSVQETF------PGLDWRDVADYYLS-R---TFE-HGAR--------RVTEMTEAAETIESFG 271 (317)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHS------TTSCHHHHHHHHHH-H---HHH-HHHH--------HHHHHHHHHHHHHTTT
T ss_pred HHHHHHcC--CCHHHHHHHHhcC------ccccHHHhhhhhhc-C---CCC-CCcc--------hHHHHHHHHHHHHHcC
Confidence 99999995 7885433321110 01111123444333 1 111 0011 2789999999999999
Q ss_pred CCcCCcHHHHHHHH----Hh-------C-CCCHHHHHHHHhcCCc
Q 014757 376 WLELFPLFATVHEI----CV-------G-HLPPSAIVEYSERKPR 408 (419)
Q Consensus 376 v~~~~P~~~~~~~~----l~-------~-~~~~~~~~~~~~~~~~ 408 (419)
+ ++|+.+.++++ +. + +.|++++++.+..+.+
T Consensus 272 ~--~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~ 314 (317)
T 4ezb_A 272 L--NAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARRLA 314 (317)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHHHC-
T ss_pred C--CChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhhcc
Confidence 9 99999999999 42 2 5678888888776443
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-21 Score=196.47 Aligned_cols=284 Identities=15% Similarity=0.151 Sum_probs=197.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc------cCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK------LGKN 131 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~------l~~~ 131 (419)
.||||+|||+|.||.++|..|+++ | ++|++|+|++++ ++.+++.+ .+.+.++.. ...+
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g-------~~V~~~D~~~~~------v~~l~~g~-~~i~e~gl~~~~~~~~~~~ 73 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPH-------ITVTVVDMNTAK------IAEWNSDK-LPIYEPGLDEIVFAARGRN 73 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTT-------SEEEEECSCHHH------HHHHTSSS-CSSCCTTHHHHHHHHBTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-------CEEEEEECCHHH------HHHHHCCC-CCcCCCCHHHHHHHhhcCC
Confidence 368999999999999999999998 6 899999998776 67777643 222223320 0235
Q ss_pred eEecCCHHHHhcCCCEEEEccCcc---------------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHH
Q 014757 132 VVADPDLENAVKDANMLVFVTPHQ---------------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLIS 196 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~~---------------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~ 196 (419)
+++++++++++.++|+||+|||+. .++++++.+.++++++++||..+ ++.+. +.+.+.+.+.
T Consensus 74 l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~g--t~~~l~~~l~ 150 (481)
T 2o3j_A 74 LFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS-TVPVK--AAESIGCILR 150 (481)
T ss_dssp EEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTT--HHHHHHHHHH
T ss_pred EEEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC-CCCCC--HHHHHHHHHH
Confidence 778889877788999999999863 38899999999999999998765 35432 2344556665
Q ss_pred hHhC----CceEEEeCcchHHHHH----hcCceeEEEeecCC---HHHHHHHHHHhCCCCc-EEEEcCcHHHHHHHHHHH
Q 014757 197 EQLG----VSCCVLMGANIANEIA----VEKFSEATVGYRDN---REIAEKWVQLFSTPYF-MVTAVQDVEGVELCGTLK 264 (419)
Q Consensus 197 ~~~g----~~~~v~~gp~~a~e~~----~g~~~~~~~~~~~~---~~~~~~l~~ll~~~g~-~~~~~~di~~~e~~~al~ 264 (419)
+..+ ..+.+..+|.++.+.. ...+..+++|+..+ ++.+++++++|+..+. .+....|+...+|.|++.
T Consensus 151 ~~~~~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~ 230 (481)
T 2o3j_A 151 EAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVA 230 (481)
T ss_dssp HHTC----CCEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHH
T ss_pred HhhCcCcCCceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHH
Confidence 5222 3456778887643211 12333466776522 2577889999998874 566677899999999877
Q ss_pred HHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCC
Q 014757 265 NVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRS 344 (419)
Q Consensus 265 Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~ 344 (419)
|. ..++....++|+..+|+++| ++++++.+..+.+..+ +.+.+..|..++ | .+
T Consensus 231 N~-----------------~~a~~ia~~nE~~~la~~~G--id~~~v~~~~~~~~ri----~~~~~~pg~g~g--g--~c 283 (481)
T 2o3j_A 231 NA-----------------FLAQRISSINSISAVCEATG--AEISEVAHAVGYDTRI----GSKFLQASVGFG--G--SC 283 (481)
T ss_dssp HH-----------------HHHHHHHHHHHHHHHHHHHS--CCHHHHHHHHHTSTTT----CSSSCCCCSCCC--S--SS
T ss_pred HH-----------------HHHHHHHHHHHHHHHHHHhC--cCHHHHHHHHccCCCC----CCCCCCCCCccC--C--cc
Confidence 75 34567889999999999994 8998887754433111 011111111011 1 22
Q ss_pred HHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcC--CcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 345 FDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLEL--FPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 345 ~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~--~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
..||.+++...|++.|+ + +|+.+.+.++- +..+..+++.+.+.
T Consensus 284 ---------------~~KD~~~l~~~A~~~g~--~~~~~l~~~~~~~N--~~~~~~~~~~~~~~ 328 (481)
T 2o3j_A 284 ---------------FQKDVLSLVYLCESLNL--PQVADYWQGVININ--NWQRRRFADKIIAE 328 (481)
T ss_dssp ---------------HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHcCC--CccchHHHHHHHHH--HhhHHHHHHHHHHh
Confidence 25799999999999998 7 89999988874 34577777777654
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-19 Score=174.85 Aligned_cols=255 Identities=10% Similarity=0.059 Sum_probs=171.9
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCC--CCCCcchHHHHHHhcCcCCccCCCCccCCCeEe
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEE--TLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~--~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
.+.||||+|||+|.||.++|..|+++| + +|++|+|++ +. .+.+.+.| +..
T Consensus 21 ~~~~~~I~iIG~G~mG~~~A~~L~~~G-------~~~V~~~dr~~~~~~------~~~~~~~g--------------~~~ 73 (312)
T 3qsg_A 21 QSNAMKLGFIGFGEAASAIASGLRQAG-------AIDMAAYDAASAESW------RPRAEELG--------------VSC 73 (312)
T ss_dssp ----CEEEEECCSHHHHHHHHHHHHHS-------CCEEEEECSSCHHHH------HHHHHHTT--------------CEE
T ss_pred cCCCCEEEEECccHHHHHHHHHHHHCC-------CCeEEEEcCCCCHHH------HHHHHHCC--------------CEE
Confidence 345789999999999999999999999 8 999999973 33 45555543 356
Q ss_pred cCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh-CCce--EEEeCcch
Q 014757 135 DPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL-GVSC--CVLMGANI 211 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~-g~~~--~v~~gp~~ 211 (419)
++++++++.++|+||+|||+....++++++.+.++++++||++++ +.+. +...+.+.+.+.. |..+ ..+.||..
T Consensus 74 ~~~~~e~~~~aDvVi~~vp~~~~~~~~~~l~~~l~~~~ivvd~st-~~~~--~~~~~~~~~~~~~~g~~~vd~pv~g~~~ 150 (312)
T 3qsg_A 74 KASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALYADFTS-CSPA--VKRAIGDVISRHRPSAQYAAVAVMSAVK 150 (312)
T ss_dssp CSCHHHHHHHCSEEEECSCTTTHHHHHHHHGGGCCTTCEEEECCC-CCHH--HHHHHHHHHHHHCTTCEEEEEEECSCST
T ss_pred eCCHHHHHhcCCEEEEecCchhHHHHHHhhHhhcCCCCEEEEcCC-CCHH--HHHHHHHHHHhhcCCCeEEeccccCCch
Confidence 778888889999999999998888889999999999999998875 3321 1233344444432 4332 23445433
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc-HHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHH
Q 014757 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD-VEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRI 290 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d-i~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~ 290 (419)
+. .+.. .++.++ +.+ ++++++|+..|.++.+.++ +-..++.|...|.+ ......
T Consensus 151 ~~---~g~l--~i~vgg-~~~--~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~-----------------~~~~~~ 205 (312)
T 3qsg_A 151 PH---GHRV--PLVVDG-DGA--RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAV-----------------LKGLEA 205 (312)
T ss_dssp TT---GGGS--EEEEES-TTH--HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHH-----------------HHHHHH
T ss_pred hh---cCCE--EEEecC-ChH--HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHH-----------------HHHHHH
Confidence 32 3443 234444 333 8899999999998888776 66667777665543 345567
Q ss_pred HHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccH-HHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHH
Q 014757 291 GLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR-KVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYE 369 (419)
Q Consensus 291 ~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~-~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~ 369 (419)
++.|+..++++.| +++ ++.+.. .....++.. ..+..+.. + .+. .. ... .||.+.+++
T Consensus 206 ~~~Ea~~la~~~G--ld~-~~~~~l------~~~~~~~~~~~~~~~~~~-~---~~~---~g----~~~--~KDl~~~~~ 263 (312)
T 3qsg_A 206 LFLEALAAAEKMG--LAD-RVLASL------DASFPEHHLRDLALYLVE-R---NLE---HA----DRR--AHELGEVAA 263 (312)
T ss_dssp HHHHHHHHHHTTT--CHH-HHHHHH------HHHSGGGTHHHHHHHHHH-H---HHH---HH----HHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCH-HHHHHH------HhcCCchhHHHhhhHhhc-C---CCC---cc----cch--HHHHHHHHH
Confidence 8899999999995 787 454421 111112211 22333332 1 111 11 111 689999999
Q ss_pred HHHHcCCCcCCcHHHHHHHHHh
Q 014757 370 VLSHRGWLELFPLFATVHEICV 391 (419)
Q Consensus 370 ~a~~~gv~~~~P~~~~~~~~l~ 391 (419)
.+++.|+ ++|+.+.+.+++.
T Consensus 264 ~a~~~g~--~~pl~~~~~~~~~ 283 (312)
T 3qsg_A 264 TLCSVGV--EPLVAEAGYRRLT 283 (312)
T ss_dssp HHHHTTC--CCHHHHHHHHHHH
T ss_pred HHHHcCC--CcHHHHHHHHHHH
Confidence 9999999 9999999998884
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=184.90 Aligned_cols=287 Identities=14% Similarity=0.110 Sum_probs=170.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCe-EecC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNV-VADP 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i-~~~~ 136 (419)
|.+|||+|||+|.||+.+|..|+++| ++|++|+|++++ .+.+++. +...... +......+ ..++
T Consensus 2 m~~mki~iiG~G~~G~~~a~~L~~~g-------~~V~~~~r~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (359)
T 1bg6_A 2 IESKTYAVLGLGNGGHAFAAYLALKG-------QSVLAWDIDAQR------IKEIQDRGAIIAEGP-GLAGTAHPDLLTS 67 (359)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHHTSEEEESS-SCCEEECCSEEES
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCC-------CEEEEEeCCHHH------HHHHHhcCCeEEecc-ccccccccceecC
Confidence 55689999999999999999999999 899999998765 5667664 2211000 00000112 3567
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh---------C-CceE-E
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL---------G-VSCC-V 205 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~---------g-~~~~-v 205 (419)
++++++.++|+||+|||+...+++++++.+.++++++||+++ |+... ...+.+.+.+.. + .++. .
T Consensus 68 ~~~~~~~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~-~~~~~---~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 143 (359)
T 1bg6_A 68 DIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNP-GATGG---ALEFRKILRENGAPEVTIGETSSMLFTCR 143 (359)
T ss_dssp CHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEESS-CCSSH---HHHHHHHHHHTTCCCCEEEEESSCSEEEE
T ss_pred CHHHHHhcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEcC-CCchH---HHHHHHHHHhcCCCCeEEEEecCCcEEEE
Confidence 887878899999999999999999999999999999999884 43221 112234443321 1 1111 1
Q ss_pred EeCcchHHHHHhcCceeEEEee---cCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHH--------HHhh
Q 014757 206 LMGANIANEIAVEKFSEATVGY---RDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIA--------AGFV 274 (419)
Q Consensus 206 ~~gp~~a~e~~~g~~~~~~~~~---~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~--------~g~~ 274 (419)
..||+++.+... ...+.++. ..+.+.+++++++|.. + .+++|+ |.|+++|+.++. .+..
T Consensus 144 ~~gpg~v~~~~~--~~~~~~g~~~~~~~~~~~~~l~~~~~~--~--~~~~di----~~k~~~nvn~~~n~~~al~~~~~~ 213 (359)
T 1bg6_A 144 SERPGQVTVNAI--KGAMDFACLPAAKAGWALEQIGSVLPQ--Y--VAVENV----LHTSLTNVNAVMHPLPTLLNAARC 213 (359)
T ss_dssp CSSTTEEEEEEE--CSCEEEEEESGGGHHHHHHHHTTTCTT--E--EECSCH----HHHHHCCHHHHHTHHHHHTTHHHH
T ss_pred eCCCCEEEEEEe--ecceEEEeccccccHHHHHHHHHHhhh--c--EEcCCh----HhhhccCCCccccHHHHHhhhchh
Confidence 234543321110 01122332 2134567888888864 2 345675 888888754432 1121
Q ss_pred hc-CCCC------ccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHH
Q 014757 275 DG-LEMG------NNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDD 347 (419)
Q Consensus 275 ~~-~~~~------~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~ 347 (419)
.. -.+. .+....++.++++|+.++++++| ++++++.+..... .... ..+.. ...++. +.+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~va~a~G--~~~~~~~~~~~~~--~~~~--~~~l~---~~~~~~--sm~~d 282 (359)
T 1bg6_A 214 ESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFD--LNVPSVCEWYKES--YGQS--PATIY---EAVQGN--PAYRG 282 (359)
T ss_dssp HTTCCCBHHHHHCCHHHHHHHHHHHHHHHHHHHTTT--CCCCCHHHHC-----------CCSHH---HHHHTC--GGGTT
T ss_pred hcCCccchhhcCCCHHHHHHHHHHHHHHHHHHHHhC--CCCCcHHHHHHHH--hCCC--cccHH---HHHhcc--hhhcC
Confidence 10 0111 33456889999999999999995 7776665531110 1000 11100 000000 11222
Q ss_pred HHHHHhcCCeeehH--H-------HHHHHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 348 LEAEMLQGQKLQGV--S-------TAREVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 348 ~~~~~~~g~~~Eg~--~-------~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
+ . +++|.+ + .++.++++|+++|+ ++|+++++|++++.
T Consensus 283 ~-----~-~~~e~~~~~~~~D~~~~~g~~~~~a~~~gv--~~P~~~~l~~~~~~ 328 (359)
T 1bg6_A 283 I-----A-GPINLNTRYFFEDVSTGLVPLSELGRAVNV--PTPLIDAVLDLISS 328 (359)
T ss_dssp C-----B-CCSSSCCHHHHHHHHTTHHHHHHHHHHTTC--CCHHHHHHHHHHHH
T ss_pred C-----C-CCCCCCccceecCcCccHHHHHHHHHHcCC--CchHHHHHHHHHHH
Confidence 2 0 122322 2 35899999999999 99999999999863
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=194.51 Aligned_cols=273 Identities=14% Similarity=0.058 Sum_probs=176.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
-|.++||+|||+|.||++||..|+++| ++|++|+|++++ ++.+.+... + .++..+++
T Consensus 12 ~~~~~~IgvIGlG~MG~~lA~~La~~G-------~~V~v~~r~~~~------~~~l~~~~~------~----~gi~~~~s 68 (480)
T 2zyd_A 12 HMSKQQIGVVGMAVMGRNLALNIESRG-------YTVSIFNRSREK------TEEVIAENP------G----KKLVPYYT 68 (480)
T ss_dssp ---CBSEEEECCSHHHHHHHHHHHTTT-------CCEEEECSSHHH------HHHHHHHST------T----SCEEECSS
T ss_pred ccCCCeEEEEccHHHHHHHHHHHHhCC-------CeEEEEeCCHHH------HHHHHhhCC------C----CCeEEeCC
Confidence 355678999999999999999999999 899999998766 566665310 0 13567788
Q ss_pred HHHHhcC---CCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcc
Q 014757 138 LENAVKD---ANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGAN 210 (419)
Q Consensus 138 ~~ea~~~---aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~ 210 (419)
+++++.+ +|+||+|||+ ..++++++++.+.++++++||+++||.... ...+.+.+.+. |.. ..+..||.
T Consensus 69 ~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~---t~~l~~~l~~~-g~~~v~~pv~gg~~ 144 (480)
T 2zyd_A 69 VKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQD---TIRRNRELSAE-GFNFIGTGVSGGEE 144 (480)
T ss_dssp HHHHHHTBCSSCEEEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHH---HHHHHHHHHHT-TCEEEEEEEESHHH
T ss_pred HHHHHhCCCCCCEEEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHH---HHHHHHHHHHC-CCCeeCCccccCHh
Confidence 8887776 9999999999 689999999999999999999999987532 12234444432 432 23334444
Q ss_pred hHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE-------EEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccH
Q 014757 211 IANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM-------VTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNT 283 (419)
Q Consensus 211 ~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~-------~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~ 283 (419)
.+. .|. . ++.++ +.+..++++++|+..+.+ +.+.++.-...+ +|+.+|.
T Consensus 145 ~a~---~g~--~-i~~gg-~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~-----------------~Kl~~N~ 200 (480)
T 2zyd_A 145 GAL---KGP--S-IMPGG-QKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY-----------------VKMVHNG 200 (480)
T ss_dssp HHH---HCC--E-EEEES-CHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHH-----------------HHHHHHH
T ss_pred HHh---cCC--e-EEecC-CHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHH-----------------HHHHHHH
Confidence 433 343 2 44445 688899999999877665 344433222223 3344566
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCCCCccchhccc-----C-CcceeecccCcccHHHHHHhhhccC---CCCHHHHHHHHh
Q 014757 284 KAAIMRIGLREMRAFSKL-LFSSVKDSTFFESC-----G-VADLITTCLGGRNRKVAEAFAKNEG---KRSFDDLEAEML 353 (419)
Q Consensus 284 ~~~l~~~~~~E~~~la~a-~g~g~~~~~~~~~~-----~-~~d~~~t~~~~rn~~~g~~l~~~g~---~~~~~~~~~~~~ 353 (419)
...++.+++.|+.+++++ +| ++++++.++. | .++.+.++.+ ..+.+ ++ ++..+.+.+ .
T Consensus 201 ~~~~~~~~laEa~~l~~~~lG--l~~~~~~~l~~~w~~g~~~s~l~~~~~-------~~l~~-~d~~~~~~v~~i~D--~ 268 (480)
T 2zyd_A 201 IEYGDMQLIAEAYSLLKGGLN--LTNEELAQTFTEWNNGELSSYLIDITK-------DIFTK-KDEDGNYLVDVILD--E 268 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTTCBHHHHHHH-------HHHHC-BCTTSSBGGGGBCC--C
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHhcCCCcccHHHHHHH-------HHHhc-CCCCCcchHHHHHH--H
Confidence 667889999999999999 75 8888887653 3 4444444332 22211 10 011211100 0
Q ss_pred cCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHH--HHHHhCCCCHHHH
Q 014757 354 QGQKLQGVSTAREVYEVLSHRGWLELFPLFATV--HEICVGHLPPSAI 399 (419)
Q Consensus 354 ~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~--~~~l~~~~~~~~~ 399 (419)
.+++.++ +.+.+.|++.|+ ++|+++.+ .+.+...++....
T Consensus 269 ~~~k~tG----~~~~~~A~~~gv--~~Pi~~~av~ar~~s~~k~~R~~ 310 (480)
T 2zyd_A 269 AANKGTG----KWTSQSALDLGE--PLSLITESVFARYISSLKDQRVA 310 (480)
T ss_dssp CCCCSCT----THHHHHHHHHTC--CCHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCchHH----HHHHHHHHHcCC--CCchHHHHHHHHhhhcchhhhHH
Confidence 1222222 356789999999 99999884 5555444444333
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-20 Score=178.91 Aligned_cols=274 Identities=11% Similarity=0.098 Sum_probs=179.8
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..+|||+|||+|.||.++|..|+++| ++|++|+|++++ .+.+.+.| +..++++
T Consensus 7 ~~~~~IgiIG~G~mG~~~A~~l~~~G-------~~V~~~dr~~~~------~~~~~~~g--------------~~~~~~~ 59 (306)
T 3l6d_A 7 SFEFDVSVIGLGAMGTIMAQVLLKQG-------KRVAIWNRSPGK------AAALVAAG--------------AHLCESV 59 (306)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSHHH------HHHHHHHT--------------CEECSSH
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHCC--------------CeecCCH
Confidence 34689999999999999999999999 999999998765 56665544 3456788
Q ss_pred HHHhcCCCEEEEccCcc-hHHHHHH--HHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchH
Q 014757 139 ENAVKDANMLVFVTPHQ-FMEGICK--RLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIA 212 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~-~~~~vl~--~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a 212 (419)
++++.++|+||+|||.. .+++++. .+.+ +.++++||++++. .+. ....+.+.+.+ .|.. .++..+|..+
T Consensus 60 ~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~-~~~g~ivid~st~-~~~--~~~~l~~~~~~-~g~~~vdapv~g~~~~~ 134 (306)
T 3l6d_A 60 KAALSASPATIFVLLDNHATHEVLGMPGVAR-ALAHRTIVDYTTN-AQD--EGLALQGLVNQ-AGGHYVKGMIVAYPRNV 134 (306)
T ss_dssp HHHHHHSSEEEECCSSHHHHHHHHTSTTHHH-HTTTCEEEECCCC-CTT--HHHHHHHHHHH-TTCEEEEEEEESCGGGT
T ss_pred HHHHhcCCEEEEEeCCHHHHHHHhcccchhh-ccCCCEEEECCCC-CHH--HHHHHHHHHHH-cCCeEEecccccCcccc
Confidence 88888999999999975 5888886 5655 4578999998763 321 12333344433 2433 2344444332
Q ss_pred HHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc--Cc-HHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHH
Q 014757 213 NEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAV--QD-VEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMR 289 (419)
Q Consensus 213 ~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~--~d-i~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~ 289 (419)
. .+. ..++.++ +++.+++++++|+..+-++.+. ++ ...... +| .......
T Consensus 135 ~---~~~--~~i~~gg-~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~---~k------------------~~~~~~~ 187 (306)
T 3l6d_A 135 G---HRE--SHSIHTG-DREAFEQHRALLEGLAGHTVFLPWDEALAFATV---LH------------------AHAFAAM 187 (306)
T ss_dssp T---CTT--CEEEEEE-CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHH---HH------------------HHHHHHH
T ss_pred c---CCc--eEEEEcC-CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHH---HH------------------HHHHHHH
Confidence 2 222 2355555 7899999999999986577666 43 222111 12 1122346
Q ss_pred HHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCccc-HHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHH
Q 014757 290 IGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRN-RKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVY 368 (419)
Q Consensus 290 ~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn-~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~ 368 (419)
.++.|+..++++. |++++++.+...-+... ..++. ..++..+.+ ++ ++...+ ......||.+.++
T Consensus 188 ~~~~Ea~~la~~~--Gld~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~-~~-~~~~~~-------~~~~~~KDl~~~~ 253 (306)
T 3l6d_A 188 VTFFEAVGAGDRF--GLPVSKTARLLLETSRF---FVADALEEAVRRLET-QD-FKGDQA-------RLDVHADAFAHIA 253 (306)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-TC-CCTTSS-------BHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHHHhhhh---cccHHHHHHHHHHhc-CC-CCCCcc-------cHHHHHHHHHHHH
Confidence 7899999999999 58998887642111000 00111 112444443 21 221100 1223478999999
Q ss_pred HHHHHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhcCC
Q 014757 369 EVLSHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSERKP 407 (419)
Q Consensus 369 ~~a~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~~~ 407 (419)
+.+++.|+ ++|+.+.+.+++ +++.|.+.++++++...
T Consensus 254 ~~a~~~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~~ 297 (306)
T 3l6d_A 254 QSLHAQGV--WTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQ 297 (306)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC---
T ss_pred HHHHHcCC--CchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhHH
Confidence 99999999 999999999988 46889999988887643
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=183.52 Aligned_cols=270 Identities=16% Similarity=0.167 Sum_probs=182.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-----cCCCeEecC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-----LGKNVVADP 136 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-----l~~~i~~~~ 136 (419)
|||+|||+|.||.++|..|++ | ++|++|+|++++ ++.+++.+.... .++.. .+.++.+++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G-------~~V~~~d~~~~~------~~~l~~~~~~i~-e~~l~~~~~~~~~~l~~t~ 65 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-Q-------NEVTIVDILPSK------VDKINNGLSPIQ-DEYIEYYLKSKQLSIKATL 65 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-T-------SEEEEECSCHHH------HHHHHTTCCSSC-CHHHHHHHHHSCCCEEEES
T ss_pred CEEEEECCCHHHHHHHHHHhC-C-------CEEEEEECCHHH------HHHHHcCCCCcC-CCCHHHHHHhccCcEEEeC
Confidence 699999999999999999999 9 999999998776 677877553221 01000 022456788
Q ss_pred CHHHHhcCCCEEEEccCcc-----------hHHHHHHHHhccCCCCcEEEE-eecCcccCCCCcccHHHHHHhHhCCceE
Q 014757 137 DLENAVKDANMLVFVTPHQ-----------FMEGICKRLVGKVNGDVEAIS-LIKGMEVKREGPCMISTLISEQLGVSCC 204 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~-----------~~~~vl~~l~~~l~~~tiivs-~~nGi~~~~~~~~~~~~~i~~~~g~~~~ 204 (419)
++++++.++|+||+|||+. +++++++.+.+ ++++++||. .|++.+. .+.+.+.++.. .
T Consensus 66 ~~~~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~--------~~~l~~~~~~~-~ 135 (402)
T 1dlj_A 66 DSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGF--------ITEMRQKFQTD-R 135 (402)
T ss_dssp CHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTH--------HHHHHHHTTCS-C
T ss_pred CHHHHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccH--------HHHHHHHhCCC-e
Confidence 8877788999999999986 59999999999 888999887 5665543 23444445433 4
Q ss_pred EEeCcchHHHH----HhcCceeEEEeecCCH------HHHHHHHHHhCCCCcE---EEEcCcHHHHHHHHHHHHHHHHHH
Q 014757 205 VLMGANIANEI----AVEKFSEATVGYRDNR------EIAEKWVQLFSTPYFM---VTAVQDVEGVELCGTLKNVVAIAA 271 (419)
Q Consensus 205 v~~gp~~a~e~----~~g~~~~~~~~~~~~~------~~~~~l~~ll~~~g~~---~~~~~di~~~e~~~al~Ni~a~~~ 271 (419)
+..+|....+. ....+..+++|+. +. +.++.+.++|...++. +....|+...+|.|++.|.+
T Consensus 136 v~~~Pe~~~~G~a~~~~~~~~riviG~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~---- 210 (402)
T 1dlj_A 136 IIFSPEFLRESKALYDNLYPSRIIVSCE-ENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTY---- 210 (402)
T ss_dssp EEECCCCCCTTSTTHHHHSCSCEEEECC-TTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHH----
T ss_pred EEECCccccCcchhhcccCCCEEEEeCC-CcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHH----
Confidence 45566543211 1122334566665 31 6678888988754433 45567899999999988863
Q ss_pred HhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHH
Q 014757 272 GFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAE 351 (419)
Q Consensus 272 g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~ 351 (419)
.++....++|+..+|+++ |++.+++.+..+.+..+ +.+....|..++ | .++
T Consensus 211 -------------~a~~ia~~nE~~~l~~~~--Gid~~~v~~~~~~~~ri----~~~~~~pg~g~g--g--~c~------ 261 (402)
T 1dlj_A 211 -------------LALRVAYFNELDTYAESR--KLNSHMIIQGISYDDRI----GMHYNNPSFGYG--G--YSL------ 261 (402)
T ss_dssp -------------HHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHTSTTT----CSSSCCCCSSCC--S--SHH------
T ss_pred -------------HHHHHHHHHHHHHHHHHh--CCCHHHHHHHhccCCCC----CcCCCCCCCccC--C--ccH------
Confidence 345577899999999999 48988887754433211 011100111111 1 221
Q ss_pred HhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014757 352 MLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 352 ~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
.+|.+++...++ |+ ++|+.+++.++- +..+..+++.+.+
T Consensus 262 ---------~kD~~~l~~~a~--~~--~~~l~~~~~~~N--~~~~~~~~~~~~~ 300 (402)
T 1dlj_A 262 ---------PKDTKQLLANYN--NI--PQTLIEAIVSSN--NVRKSYIAKQIIN 300 (402)
T ss_dssp ---------HHHHHHHHHHHT--TS--SCSHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred ---------HhhHHHHHHHhc--CC--ChHHHHHHHHHH--HHhHHHHHHHHHH
Confidence 578888888774 88 999999999984 4467777776665
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-20 Score=188.64 Aligned_cols=284 Identities=14% Similarity=0.158 Sum_probs=189.1
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc--cC----
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK--LG---- 129 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~--l~---- 129 (419)
+..||||+|||+|.||.++|..|+++ | ++|++|+|++++ ++.+++.+ .+.+.++.. +.
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G-------~~V~~~d~~~~~------~~~l~~g~-~~i~e~~l~~~~~~~~~ 67 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPE-------IRVTVVDVNESR------INAWNSPT-LPIYEPGLKEVVESCRG 67 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTT-------SEEEEECSCHHH------HHHHTSSS-CSSCCTTHHHHHHHHBT
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCC-------CEEEEEECCHHH------HHHHhCCC-CCcCCCCHHHHHHHhhc
Confidence 44578999999999999999999999 7 899999998766 67776543 222333321 11
Q ss_pred CCeEecCCHHHHhcCCCEEEEccCcch---------------HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHH
Q 014757 130 KNVVADPDLENAVKDANMLVFVTPHQF---------------MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTL 194 (419)
Q Consensus 130 ~~i~~~~~~~ea~~~aDlVilavp~~~---------------~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~ 194 (419)
.++++++++++++.++|+||+|||+.. +.++++++.+.++++++||..++ +.+. +.+.+.+.
T Consensus 68 ~~~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~ST-v~~g--~~~~l~~~ 144 (467)
T 2q3e_A 68 KNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKST-VPVR--AAESIRRI 144 (467)
T ss_dssp TTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSC-CCTT--HHHHHHHH
T ss_pred CCEEEECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCc-CCch--HHHHHHHH
Confidence 357788898888889999999998632 67888899998888999888764 3332 12334455
Q ss_pred HHhHh--CCceEEEeCcchHHHHH----hcCceeEEEee----cCCHHHHHHHHHHhCCC-CcEEEEcCcHHHHHHHHHH
Q 014757 195 ISEQL--GVSCCVLMGANIANEIA----VEKFSEATVGY----RDNREIAEKWVQLFSTP-YFMVTAVQDVEGVELCGTL 263 (419)
Q Consensus 195 i~~~~--g~~~~v~~gp~~a~e~~----~g~~~~~~~~~----~~~~~~~~~l~~ll~~~-g~~~~~~~di~~~e~~~al 263 (419)
+.+.. +..+.+..+|..+.+.. ...+..+++++ . +.+..++++++|+.. +..+....++...+|.|++
T Consensus 145 l~~~~~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~-~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~ 223 (467)
T 2q3e_A 145 FDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPE-GQRAVQALCAVYEHWVPREKILTTNTWSSELSKLA 223 (467)
T ss_dssp HHHTCCTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHH-HHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHH
T ss_pred HHHhCCCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCC-CHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHH
Confidence 54431 13467778887653210 12334466776 3 567889999999987 5555556678888998877
Q ss_pred HHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCC
Q 014757 264 KNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKR 343 (419)
Q Consensus 264 ~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~ 343 (419)
.|. ..++....++|+..++++. |++++++.+..+....+ +...+..|..++ | .
T Consensus 224 ~N~-----------------~~a~~ia~~nE~~~l~~~~--Gid~~~v~~~~~~~~~~----~~~~~~pg~g~g--g--~ 276 (467)
T 2q3e_A 224 ANA-----------------FLAQRISSINSISALCEAT--GADVEEVATAIGMDQRI----GNKFLKASVGFG--G--S 276 (467)
T ss_dssp HHH-----------------HHHHHHHHHHHHHHHHHHH--TCCHHHHHHHHHTSTTT----CSSSCCCCSCCC--S--S
T ss_pred HHH-----------------HHHHHHHHHHHHHHHHHHh--CcCHHHHHHHHcCCCCC----CccccCCCCCCC--C--c
Confidence 665 3456788999999999999 48998887654332110 011111111011 1 2
Q ss_pred CHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcC--CcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014757 344 SFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLEL--FPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 344 ~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~--~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
+ ..||.+++...|++.|+ + .++.+.+.++ ++..+..+++.+.+
T Consensus 277 c---------------~~kD~~~l~~~a~~~g~--~~~~~~~~~~~~~--n~~~~~~~~~~~~~ 321 (467)
T 2q3e_A 277 C---------------FQKDVLNLVYLCEALNL--PEVARYWQQVIDM--NDYQRRRFASRIID 321 (467)
T ss_dssp S---------------HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred c---------------HHHHHHHHHHHHHHcCC--chHHHHHHHHHHH--HHHhHHHHHHHHHH
Confidence 2 25799999999999997 5 4555555544 22345556665544
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=184.95 Aligned_cols=281 Identities=11% Similarity=-0.046 Sum_probs=179.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|.||+++|..|+++| ++|++|+|++++ ++.+.+. |.. +. +.++..++++++
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G-------~~V~v~dr~~~~------~~~l~~~~g~~----~~---~~~i~~~~~~~e 61 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKG-------FKVAVFNRTYSK------SEEFMKANASA----PF---AGNLKAFETMEA 61 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSHHH------HHHHHHHTTTS----TT---GGGEEECSCHHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHhcCCC----CC---CCCeEEECCHHH
Confidence 68999999999999999999999 899999998765 5666653 311 10 123567788888
Q ss_pred Hhc---CCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHH
Q 014757 141 AVK---DANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIAN 213 (419)
Q Consensus 141 a~~---~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~ 213 (419)
++. ++|+||+|||+ ..++++++++.+.++++++||+++||.... ...+.+.+.+ .|.. ..+..+|..+
T Consensus 62 ~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~---~~~l~~~l~~-~g~~~v~~pv~gg~~~a- 136 (478)
T 1pgj_A 62 FAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKD---QGRRAQQLEA-AGLRFLGMGISGGEEGA- 136 (478)
T ss_dssp HHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHH---HHHHHHHHHT-TTCEEEEEEEESHHHHH-
T ss_pred HHhcccCCCEEEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHH---HHHHHHHHHH-CCCeEEEeeccCCHHHH-
Confidence 766 49999999999 489999999999999999999999987532 1222333332 1332 2333334322
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE-------EEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM-------VTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAA 286 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~-------~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~ 286 (419)
..|. .+++ ++ +.+..++++++|+..+.+ +.+.++.-...+.| +.+|....
T Consensus 137 --~~g~--~i~~-gg-~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~K-----------------l~~N~~~~ 193 (478)
T 1pgj_A 137 --RKGP--AFFP-GG-TLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVK-----------------MYHNSGEY 193 (478)
T ss_dssp --HHCC--EEEE-EE-CHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHH-----------------HHHHHHHH
T ss_pred --hcCC--eEec-cC-CHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHh-----------------hHHHHHHH
Confidence 2343 2344 44 688889999999876655 33333322222223 33455566
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchhcccC----CcceeecccCcccHH-HHHHhhhccC--C-CCHHHHHHHHhcCCee
Q 014757 287 IMRIGLREMRAFSKLLFSSVKDSTFFESCG----VADLITTCLGGRNRK-VAEAFAKNEG--K-RSFDDLEAEMLQGQKL 358 (419)
Q Consensus 287 l~~~~~~E~~~la~a~g~g~~~~~~~~~~~----~~d~~~t~~~~rn~~-~g~~l~~~g~--~-~~~~~~~~~~~~g~~~ 358 (419)
++.+++.|+.+++++. |++++++.+... .+.. .+.... .+..+.+ ++ + +..+.+. -.
T Consensus 194 ~~~~~i~Ea~~l~~~~--G~~~~~~~~l~~~w~~~g~~-----~s~l~~~~~~~l~~-~d~~G~~~ld~i~-------D~ 258 (478)
T 1pgj_A 194 AILQIWGEVFDILRAM--GLNNDEVAAVLEDWKSKNFL-----KSYMLDISIAAARA-KDKDGSYLTEHVM-------DR 258 (478)
T ss_dssp HHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTSTT-----CBHHHHHHHHHHHC-BCTTSSBGGGGBC-------CC
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHhccCCCc-----CchHHHhhchhhhc-CCCCChhHHHHHH-------HH
Confidence 7889999999999998 478887766432 1110 011111 1222322 11 0 1111100 00
Q ss_pred ehHH-HHHHHHHHHHHcCCCcCCcHHHH-HH-HHHhCCCCHHHHHHHHhcCC
Q 014757 359 QGVS-TAREVYEVLSHRGWLELFPLFAT-VH-EICVGHLPPSAIVEYSERKP 407 (419)
Q Consensus 359 Eg~~-~~~~v~~~a~~~gv~~~~P~~~~-~~-~~l~~~~~~~~~~~~~~~~~ 407 (419)
-+.+ +.+.++++|+++|+ ++|+++. ++ +++...+++....+.+...+
T Consensus 259 ~~~kgtg~~~~~~A~~~Gv--~~Pi~~~av~~r~ls~~~~~r~~~~~~l~~~ 308 (478)
T 1pgj_A 259 IGSKGTGLWSAQEALEIGV--PAPSLNMAVVSRQFTMYKTERQANASNAPGI 308 (478)
T ss_dssp CCCCSHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTHHHHHHHHHHSTTT
T ss_pred hcCccHHHHHHHHHHHhCC--CChHHHHHHHHHHHhCCCCHHHHHHHhcCCC
Confidence 0012 22688999999999 9999998 65 77778888888777766544
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-19 Score=183.06 Aligned_cols=267 Identities=12% Similarity=0.020 Sum_probs=168.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+|||+|||+|.||+.+|..|+++| ++|++|+|++++ ++.+.+... ++ .++..++++++
T Consensus 2 ~m~IgvIG~G~mG~~lA~~La~~G-------~~V~v~dr~~~~------~~~l~~~~~-----~g----~gi~~~~~~~e 59 (482)
T 2pgd_A 2 QADIALIGLAVMGQNLILNMNDHG-------FVVCAFNRTVSK------VDDFLANEA-----KG----TKVLGAHSLEE 59 (482)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSTHH------HHHHHHTTT-----TT----SSCEECSSHHH
T ss_pred CCeEEEEChHHHHHHHHHHHHHCC-------CeEEEEeCCHHH------HHHHHhccc-----cC----CCeEEeCCHHH
Confidence 378999999999999999999999 899999999876 666665210 01 13556788888
Q ss_pred Hhc---CCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHH--
Q 014757 141 AVK---DANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANE-- 214 (419)
Q Consensus 141 a~~---~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e-- 214 (419)
++. ++|+||+|||+. .++++++++.+.++++++||+++||.... ...+.+.+.+ .|.. ++.+|....+
T Consensus 60 ~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~---~~~l~~~l~~-~g~~--~v~~pv~g~~~~ 133 (482)
T 2pgd_A 60 MVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRD---TMRRCRDLKD-KGIL--FVGSGVSGGEDG 133 (482)
T ss_dssp HHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHH---HHHHHHHHHH-TTCE--EEEEEEESHHHH
T ss_pred HHhhccCCCEEEEeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHH---HHHHHHHHHH-cCCe--EeCCCCCCChhh
Confidence 764 899999999995 89999999999999999999999987532 1222333333 2332 2233332221
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEE-------EEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHH
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMV-------TAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAI 287 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~-------~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l 287 (419)
...|. .++. ++ +.+..++++++|+..+.++ .+..+. |.....|+.+|....+
T Consensus 134 a~~g~--~i~~-gg-~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~-----------------g~g~~~Kl~~N~~~~~ 192 (482)
T 2pgd_A 134 ARYGP--SLMP-GG-NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDD-----------------GAGHFVKMVHNGIEYG 192 (482)
T ss_dssp HHHCC--EEEE-EE-CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEET-----------------THHHHHHHHHHHHHHH
T ss_pred hccCC--eEEe-CC-CHHHHHHHHHHHHHhhhhccCCCcceEEECCC-----------------cHHHHHHHHHHHHHHH
Confidence 22343 3344 44 5677888999998877664 222222 1122233345656677
Q ss_pred HHHHHHHHHHHHHHh-cCCCCccchhcccC---CcceeecccCcccHHHHHHhhhccC---CCCHHHHHHHHhcCCeeeh
Q 014757 288 MRIGLREMRAFSKLL-FSSVKDSTFFESCG---VADLITTCLGGRNRKVAEAFAKNEG---KRSFDDLEAEMLQGQKLQG 360 (419)
Q Consensus 288 ~~~~~~E~~~la~a~-g~g~~~~~~~~~~~---~~d~~~t~~~~rn~~~g~~l~~~g~---~~~~~~~~~~~~~g~~~Eg 360 (419)
+.++++|+.+++++. | ++++++.+... .++ .+++-.++. ...+.. ++ ++.++.+. .....
T Consensus 193 ~~~~i~Ea~~l~~~~~G--~~~~~~~~~~~~w~~g~--~~S~l~~~~--~~~l~~-~d~~~~~~ld~i~------d~~~~ 259 (482)
T 2pgd_A 193 DMQLICEAYHLMKDVLG--LGHKEMAKAFEEWNKTE--LDSFLIEIT--ASILKF-QDADGKHLLPKIR------DSAGQ 259 (482)
T ss_dssp HHHHHHHHHHHHHHTSC--CCHHHHHHHHHHHTTTT--TCBHHHHHH--HHHHHC-BCTTSSBSGGGSC------CCCCC
T ss_pred HHHHHHHHHHHHHhcCC--cCHHHHHHHHHHhcCCC--cCchHHHHH--hHHhhc-cCCCCCeeecccc------ccccc
Confidence 889999999999998 6 78877766432 121 000001221 222332 11 01111110 01112
Q ss_pred HHHHHHHHHHHHHcCCCcCCcHHH-HHHHHHh
Q 014757 361 VSTAREVYEVLSHRGWLELFPLFA-TVHEICV 391 (419)
Q Consensus 361 ~~~~~~v~~~a~~~gv~~~~P~~~-~~~~~l~ 391 (419)
.++.+.++++|+++|+ ++|+++ .+|+.+.
T Consensus 260 k~t~~~~~~~A~~~Gv--~~P~i~~av~~~~~ 289 (482)
T 2pgd_A 260 KGTGKWTAISALEYGV--PVTLIGEAVFARCL 289 (482)
T ss_dssp CSHHHHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCC--CcchHHHHHHHHhh
Confidence 3456678899999999 999995 6888773
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-19 Score=176.98 Aligned_cols=280 Identities=17% Similarity=0.169 Sum_probs=178.5
Q ss_pred CCCCCCC-CCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-
Q 014757 50 FSSGSDD-GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK- 127 (419)
Q Consensus 50 ~~~~~~~-~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~- 127 (419)
|+....+ -++.+|||+|||+|.||.++|..|++ | ++|++||+++++ ++.+++. ..+.+.++..
T Consensus 24 ~~~~~~~~r~~~~mkIaVIGlG~mG~~lA~~La~-G-------~~V~~~D~~~~~------v~~l~~g-~~~i~e~~l~~ 88 (432)
T 3pid_A 24 MTGGQQMGRGSEFMKITISGTGYVGLSNGVLIAQ-N-------HEVVALDIVQAK------VDMLNQK-ISPIVDKEIQE 88 (432)
T ss_dssp -----------CCCEEEEECCSHHHHHHHHHHHT-T-------SEEEEECSCHHH------HHHHHTT-CCSSCCHHHHH
T ss_pred ccCCcccccccCCCEEEEECcCHHHHHHHHHHHc-C-------CeEEEEecCHHH------hhHHhcc-CCccccccHHH
Confidence 3444444 45667899999999999999999998 8 999999999876 6777763 2332222221
Q ss_pred -c---CCCeEecCCHHHHhcCCCEEEEccCcc-----------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHH
Q 014757 128 -L---GKNVVADPDLENAVKDANMLVFVTPHQ-----------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMIS 192 (419)
Q Consensus 128 -l---~~~i~~~~~~~ea~~~aDlVilavp~~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~ 192 (419)
+ ..++++++|+++++.+||+||+|||+. +++++++.+.+ ++++++||..++ +.+. +.
T Consensus 89 ll~~~~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~ST-v~pg--tt---- 160 (432)
T 3pid_A 89 YLAEKPLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKST-IPVG--FT---- 160 (432)
T ss_dssp HHHHSCCCEEEESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSC-CCTT--HH----
T ss_pred HHhhccCCeEEEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCC-CChH--HH----
Confidence 1 235788999988899999999999985 68899999999 899999987663 5542 12
Q ss_pred HHHHhHhCCceEEEeCc-----chHHHHHhcCceeEEEeecCCHHHHHHHHHHhCC--C--CcEEEEcCcHHHHHHHHHH
Q 014757 193 TLISEQLGVSCCVLMGA-----NIANEIAVEKFSEATVGYRDNREIAEKWVQLFST--P--YFMVTAVQDVEGVELCGTL 263 (419)
Q Consensus 193 ~~i~~~~g~~~~v~~gp-----~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~--~--g~~~~~~~di~~~e~~~al 263 (419)
+.+.+.++.. .+...| +.+.+-. -.+..+++|+ +.+.++++.++|.. . +.++.. .++...|+.|++
T Consensus 161 ~~l~~~l~~~-~v~~sPe~~~~G~A~~~~-l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~-~~~~~AE~~Kl~ 235 (432)
T 3pid_A 161 RDIKERLGID-NVIFSPEFLREGRALYDN-LHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLF-TDSTEAEAIKLF 235 (432)
T ss_dssp HHHHHHHTCC-CEEECCCCCCTTSHHHHH-HSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEE-CCHHHHHHHHHH
T ss_pred HHHHHHHhhc-cEeecCccCCcchhhhcc-cCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEe-cCccHHHHHHHH
Confidence 2333333321 222344 4443221 2233455554 45677888888864 2 334444 467778887766
Q ss_pred HHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCC
Q 014757 264 KNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKR 343 (419)
Q Consensus 264 ~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~ 343 (419)
.| ...++....++|+..+|+++ |+|++++.+..+....+.+. ....|.-++ | .
T Consensus 236 ~N-----------------~~~a~~Ia~~nEl~~lae~~--GiD~~~v~~~~~~dprig~~----~~~pg~G~G--G--~ 288 (432)
T 3pid_A 236 AN-----------------TYLALRVAYFNELDSYAESQ--GLNSKQIIEGVCLDPRIGNH----YNNPSFGYG--G--Y 288 (432)
T ss_dssp HH-----------------HHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHTSTTTCSS----SCCCCSCCC--T--T
T ss_pred HH-----------------HHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHccCCCCCcc----cCCCCCCCc--c--c
Confidence 55 44567788999999999999 58998888765443211110 001111122 3 5
Q ss_pred CHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014757 344 SFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 344 ~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
++ .+|..++. ++..|+ +.++.+++.++ ++..+..+++.+.+
T Consensus 289 C~---------------pkD~~~L~--~~~~~~--~~~li~~~~~~--N~~~~~~v~~~i~~ 329 (432)
T 3pid_A 289 CL---------------PKDTKQLL--ANYESV--PNNIIAAIVDA--NRTRKDFIADSILA 329 (432)
T ss_dssp TH---------------HHHHHHHH--HHTTTS--CCSHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred ch---------------hhhHHHHH--HHhcCC--chhHHHHHHHH--HHhhHHHHHHHHHh
Confidence 64 34555554 334588 88999999988 44466777777665
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=172.69 Aligned_cols=291 Identities=16% Similarity=0.140 Sum_probs=200.7
Q ss_pred CCCCCCCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc---
Q 014757 51 SSGSDDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK--- 127 (419)
Q Consensus 51 ~~~~~~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~--- 127 (419)
++.......+|.+|+|||+|.||..+|..|++.| |+|+.+|.++++ ++.|++ |..+.+.|+..
T Consensus 11 ~~~~~p~~~~m~~IaViGlGYVGLp~A~~~A~~G-------~~V~g~Did~~k------V~~ln~-G~~pi~Epgl~ell 76 (444)
T 3vtf_A 11 SSGLVPRGSHMASLSVLGLGYVGVVHAVGFALLG-------HRVVGYDVNPSI------VERLRA-GRPHIYEPGLEEAL 76 (444)
T ss_dssp --CCCCTTCCCCEEEEECCSHHHHHHHHHHHHHT-------CEEEEECSCHHH------HHHHHT-TCCSSCCTTHHHHH
T ss_pred cCCcCCCCCCCCEEEEEccCHHHHHHHHHHHhCC-------CcEEEEECCHHH------HHHHHC-CCCCCCCCCHHHHH
Confidence 4444455667889999999999999999999999 999999999877 888887 44444555531
Q ss_pred ---c-CCCeEecCCHHHHhcCCCEEEEccCc----------chHHHHHHHHhccCC---CCcEEEEeecCcccCCCCccc
Q 014757 128 ---L-GKNVVADPDLENAVKDANMLVFVTPH----------QFMEGICKRLVGKVN---GDVEAISLIKGMEVKREGPCM 190 (419)
Q Consensus 128 ---l-~~~i~~~~~~~ea~~~aDlVilavp~----------~~~~~vl~~l~~~l~---~~tiivs~~nGi~~~~~~~~~ 190 (419)
+ ..++++++++++++.++|++|+|||+ ..++++.+.+.++++ ++++||.-++ +.+.+ +.+.
T Consensus 77 ~~~~~~g~l~~tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eST-VppGt-te~~ 154 (444)
T 3vtf_A 77 GRALSSGRLSFAESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKST-VPPGT-TEGL 154 (444)
T ss_dssp HHHHHTTCEEECSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSC-CCTTT-TTTH
T ss_pred HHHHHcCCeeEEcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCC-CCCch-HHHH
Confidence 1 34678899999889999999999985 258888888887774 4667776543 44422 2223
Q ss_pred HHHHHHhHh-CCceEEEeCcchHHHH----HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHH
Q 014757 191 ISTLISEQL-GVSCCVLMGANIANEI----AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKN 265 (419)
Q Consensus 191 ~~~~i~~~~-g~~~~v~~gp~~a~e~----~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~N 265 (419)
....+.+.. +..+.+.+.|.+..+. -.-.+..+++|+. ++...+.+.++++.....+.. .++..+|+.|.+.|
T Consensus 155 ~~~~l~~~~~~~~f~v~~~PErl~eG~a~~d~~~~~riViG~~-~~~a~~~~~~ly~~~~~~~~~-~~~~~AE~~Kl~eN 232 (444)
T 3vtf_A 155 VARAVAEEAGGVKFSVASNPEFLREGSALEDFFKPDRIVIGAG-DERAASFLLDVYKAVDAPKLV-MKPREAELVKYASN 232 (444)
T ss_dssp HHHHHHTTTTTCCCEEEECCCCCCTTSHHHHHHSCSCEEEEES-SHHHHHHHHHHTTTSCSCEEE-ECHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceeecCcccccCCccccccccCCcEEEcCC-CHHHHHHHHHHHhccCCCEEE-echhHHHHHHHHHH
Confidence 344554433 3467778888654321 0123456677776 777888899999876555544 46778888886655
Q ss_pred HHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCH
Q 014757 266 VVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSF 345 (419)
Q Consensus 266 i~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~ 345 (419)
...++-...++|+..+|+++| +|...+.+.++....+ +....+.|.-++ | .++
T Consensus 233 -----------------~~ravnIa~~NEla~ice~~G--iDv~eV~~a~~~d~ri----g~~~l~PG~G~G--G--~Ci 285 (444)
T 3vtf_A 233 -----------------VFLALKISFANEVGLLAKRLG--VDTYRVFEAVGLDKRI----GRHYFGAGLGFG--G--SCF 285 (444)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHTSTTS----CSTTCCCSSCCC--T--TTH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHhccCCCC----CCCCCCCCCCCC--C--ccc
Confidence 445667788999999999994 8887777654432111 011111222222 3 564
Q ss_pred HHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014757 346 DDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 346 ~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
.+|..++...|+++|+ ++++.+++.++-. ..|..+++.+.+
T Consensus 286 ---------------pkD~~~L~~~a~~~g~--~~~li~a~~~iN~--~~~~~vv~~l~~ 326 (444)
T 3vtf_A 286 ---------------PKDTLAFIRFGESLGL--EMAISKAVLRVNE--YMPRYAVQLLEE 326 (444)
T ss_dssp ---------------HHHHHHHHHHHHHTTC--CCHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred ---------------CcCHHHHHHHHHhcCC--CHHHHHhhHHHHH--HHHHHHHHHHHH
Confidence 4678888999999999 9999999888843 356777777765
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-19 Score=181.88 Aligned_cols=267 Identities=15% Similarity=0.074 Sum_probs=173.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
+.+|||+|||+|.||.++|..|+++| ++|++|+|++++ ++.+.+.+.. + .++..++++
T Consensus 2 ~~~~kIgiIGlG~MG~~lA~~L~~~G-------~~V~v~dr~~~~------~~~l~~~g~~-----g----~~i~~~~s~ 59 (484)
T 4gwg_A 2 NAQADIALIGLAVMGQNLILNMNDHG-------FVVCAFNRTVSK------VDDFLANEAK-----G----TKVVGAQSL 59 (484)
T ss_dssp -CCBSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSTHH------HHHHHHTTTT-----T----SSCEECSSH
T ss_pred CCCCEEEEEChhHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHhcccC-----C----CceeccCCH
Confidence 45789999999999999999999999 999999999876 6777664321 0 124456788
Q ss_pred HHHhc---CCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcch
Q 014757 139 ENAVK---DANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANI 211 (419)
Q Consensus 139 ~ea~~---~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~ 211 (419)
++++. ++|+||+|||+ ..++++++++.+.++++++||+++|+.... .....+.+.+. |.. +.+.+||..
T Consensus 60 ~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~---t~~~~~~l~~~-Gi~fvd~pVsGg~~g 135 (484)
T 4gwg_A 60 KEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRD---TTRRCRDLKAK-GILFVGSGVSGGEEG 135 (484)
T ss_dssp HHHHHTBCSSCEEEECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHH---HHHHHHHHHHT-TCEEEEEEEESHHHH
T ss_pred HHHHhhccCCCEEEEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchH---HHHHHHHHHhh-ccccccCCccCCHHH
Confidence 88766 59999999999 589999999999999999999999876432 12223333332 433 344455544
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEE-------EEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHH
Q 014757 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMV-------TAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTK 284 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~-------~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~ 284 (419)
+. .|. .++++ + +.+.+++++++|+..+.++ .+..+. |..+.+|+.+|..
T Consensus 136 A~---~G~--~im~G-G-~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~-----------------Gag~~vKmv~N~i 191 (484)
T 4gwg_A 136 AR---YGP--SLMPG-G-NKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDE-----------------GAGHFVKMVHNGI 191 (484)
T ss_dssp HH---HCC--EEEEE-E-CGGGHHHHHHHHHHHSCBCTTSCBSBCCCEET-----------------THHHHHHHHHHHH
T ss_pred Hh---cCC--eeecC-C-CHHHHHHHHHHHHHhcCcccCCCceEEEECCc-----------------cHHHHHHHHHHHH
Confidence 43 343 34444 4 6788899999998655443 333332 2333344556777
Q ss_pred HHHHHHHHHHHHHHHHH-hcCCCCccchhccc---CCcceeecccCcccH-HHHHHhhhcc-C-CCCHHHHHHHHhcCCe
Q 014757 285 AAIMRIGLREMRAFSKL-LFSSVKDSTFFESC---GVADLITTCLGGRNR-KVAEAFAKNE-G-KRSFDDLEAEMLQGQK 357 (419)
Q Consensus 285 ~~l~~~~~~E~~~la~a-~g~g~~~~~~~~~~---~~~d~~~t~~~~rn~-~~g~~l~~~g-~-~~~~~~~~~~~~~g~~ 357 (419)
.....++++|+..++++ + |++++++.+.. ..++ + .|.-. ..+..+..+. + ++.++.+... .|++
T Consensus 192 ~~~~m~~iaEa~~l~~~~~--Gld~~~l~~v~~~w~~G~----~-~S~l~e~~~~~l~~~D~~g~~~ld~i~d~--~~~k 262 (484)
T 4gwg_A 192 EYGDMQLICEAYHLMKDVL--GMAQDEMAQAFEDWNKTE----L-DSFLIEITANILKFQDTDGKHLLPKIRDS--AGQK 262 (484)
T ss_dssp HHHHHHHHHHHHHHHHHTS--CCCHHHHHHHHHHHTTTT----T-CBHHHHHHHHHHHCBCTTSSBSGGGSCCC--CCSS
T ss_pred HHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHcCCC----c-cchHHHHHHHHHhcCCccCCccHHHHhcc--ccCc
Confidence 77889999999999999 7 58988876642 1111 1 11111 1133444211 0 0223333221 3567
Q ss_pred eehHHHHHHHHHHHHHcCCCcCCc-HHHHHHHHH
Q 014757 358 LQGVSTAREVYEVLSHRGWLELFP-LFATVHEIC 390 (419)
Q Consensus 358 ~Eg~~~~~~v~~~a~~~gv~~~~P-~~~~~~~~l 390 (419)
-||.+++.. |.++|+ ++| +.+++++.+
T Consensus 263 gtG~wt~~~----A~~~gv--p~p~i~~av~~R~ 290 (484)
T 4gwg_A 263 GTGKWTAIS----ALEYGV--PVTLIGEAVFARC 290 (484)
T ss_dssp CTTHHHHHH----HHHHTC--CCHHHHHHHHHHH
T ss_pred chHHHHHHH----HHHcCC--CchHHHHHHHHHH
Confidence 788887554 458889 999 445566655
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=171.50 Aligned_cols=192 Identities=9% Similarity=0.066 Sum_probs=136.0
Q ss_pred CCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 56 DGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.-++.+|||+|||+|.||..+|..|+++| ++|++|+|++++ ++.+.+.| +..+
T Consensus 17 ~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G-------~~V~v~dr~~~~------~~~l~~~g--------------~~~~ 69 (358)
T 4e21_A 17 NLYFQSMQIGMIGLGRMGADMVRRLRKGG-------HECVVYDLNVNA------VQALEREG--------------IAGA 69 (358)
T ss_dssp -----CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHTTT--------------CBCC
T ss_pred hhhhcCCEEEEECchHHHHHHHHHHHhCC-------CEEEEEeCCHHH------HHHHHHCC--------------CEEe
Confidence 33566789999999999999999999999 999999998765 66666543 3456
Q ss_pred CCHHHHhcCC---CEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCc
Q 014757 136 PDLENAVKDA---NMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGA 209 (419)
Q Consensus 136 ~~~~ea~~~a---DlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp 209 (419)
+++++++..+ |+||+|||+..++++++++.+.++++++||+++++.... ...+.+.+.+. |. .+.+.+||
T Consensus 70 ~s~~e~~~~a~~~DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---~~~~~~~l~~~-g~~~vdapVsGg~ 145 (358)
T 4e21_A 70 RSIEEFCAKLVKPRVVWLMVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQD---DIRRADQMRAQ-GITYVDVGTSGGI 145 (358)
T ss_dssp SSHHHHHHHSCSSCEEEECSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHH---HHHHHHHHHTT-TCEEEEEEEECGG
T ss_pred CCHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHH---HHHHHHHHHHC-CCEEEeCCCCCCH
Confidence 7888888878 999999999999999999999999999999998754321 12223333322 33 24556666
Q ss_pred chHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCC--------------------cEEEEcCcHHHHHHHHHHHHHHHH
Q 014757 210 NIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPY--------------------FMVTAVQDVEGVELCGTLKNVVAI 269 (419)
Q Consensus 210 ~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g--------------------~~~~~~~di~~~e~~~al~Ni~a~ 269 (419)
..+. .|. .++.++ +.+.+++++++|+..+ ..+.+..+.-..++.|.+.|
T Consensus 146 ~~a~---~G~---~im~GG-~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n---- 214 (358)
T 4e21_A 146 FGLE---RGY---CLMIGG-EKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHN---- 214 (358)
T ss_dssp GHHH---HCC---EEEEES-CHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHH----
T ss_pred HHHh---cCC---eeeecC-CHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHH----
Confidence 5554 353 344455 7888999999988765 34555555544455555544
Q ss_pred HHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHh
Q 014757 270 AAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLL 302 (419)
Q Consensus 270 ~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~ 302 (419)
........++.|...++++.
T Consensus 215 -------------~l~~~~i~~~aE~~~la~~a 234 (358)
T 4e21_A 215 -------------GIEYGLMAAYAEGLNILHHA 234 (358)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTT
T ss_pred -------------HHHHHHHHHHHHHHHHHHhc
Confidence 33445677899999999987
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-19 Score=183.08 Aligned_cols=201 Identities=12% Similarity=0.015 Sum_probs=139.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+|||+|||+|.||+.+|..|+++| ++|++|+|++++ ++.+.+... + .++..++++++
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G-------~~V~v~dr~~~~------~~~l~~~~~------~----~gi~~~~s~~e 61 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRG-------YTVAIYNRTTSK------TEEVFKEHQ------D----KNLVFTKTLEE 61 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSHHH------HHHHHHHTT------T----SCEEECSSHHH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCC-------CEEEEEcCCHHH------HHHHHHhCc------C----CCeEEeCCHHH
Confidence 579999999999999999999999 899999998765 566654310 0 13567788888
Q ss_pred HhcC---CCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcchHH--
Q 014757 141 AVKD---ANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANIAN-- 213 (419)
Q Consensus 141 a~~~---aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~a~-- 213 (419)
++.. +|+||+|||+ ..++++++++.+.++++++||+++||.... .+.+.+.+.. ...++..|....
T Consensus 62 ~v~~l~~aDvVilavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~-------~~~l~~~l~~~g~~~v~~pv~gg~~ 134 (474)
T 2iz1_A 62 FVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPD-------TMRRNAELADSGINFIGTGVSGGEK 134 (474)
T ss_dssp HHHTBCSSCEEEECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHH-------HHHHHHHTTTSSCEEEEEEECSHHH
T ss_pred HHhhccCCCEEEEEccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHH-------HHHHHHHHHHCCCeEECCCCCCChh
Confidence 7766 9999999999 589999999999999999999999886431 1222233321 122222232211
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE--------EEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM--------VTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKA 285 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~--------~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~ 285 (419)
....|. + ++ .++ +.+..++++++|+..+.+ +.+.++.-...|.|.+ +|...
T Consensus 135 ~a~~g~-~-i~-~gg-~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~-----------------~N~~~ 193 (474)
T 2iz1_A 135 GALLGP-S-MM-PGG-QKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMV-----------------HNGIE 193 (474)
T ss_dssp HHHHCC-C-EE-EEE-CHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHH-----------------HHHHH
T ss_pred hhccCC-e-EE-ecC-CHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHH-----------------HhHHH
Confidence 122343 3 33 444 688899999999876655 3444443333444443 34445
Q ss_pred HHHHHHHHHHHHHHHH-hcCCCCccchhcc
Q 014757 286 AIMRIGLREMRAFSKL-LFSSVKDSTFFES 314 (419)
Q Consensus 286 ~l~~~~~~E~~~la~a-~g~g~~~~~~~~~ 314 (419)
.++.+++.|+.+++++ +| ++++++.+.
T Consensus 194 ~~~~~~laEa~~l~~~~~G--l~~~~~~~l 221 (474)
T 2iz1_A 194 YGDMQLIAESYDLLKRILG--LSNAEIQAI 221 (474)
T ss_dssp HHHHHHHHHHHHHHHHTSC--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC--CCHHHHHHH
Confidence 6778999999999999 75 788777654
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-19 Score=178.70 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=158.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-------cCCCeE
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-------LGKNVV 133 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-------l~~~i~ 133 (419)
-.|..|||+|.||.++|..|+++| |+|++||+++++ ++.+++. ..+.+.++.. .+.++.
T Consensus 11 ~~~~~ViGlGyvGlp~A~~La~~G-------~~V~~~D~~~~k------v~~L~~g-~~pi~epgl~~ll~~~~~~g~l~ 76 (431)
T 3ojo_A 11 GSKLTVVGLGYIGLPTSIMFAKHG-------VDVLGVDINQQT------IDKLQNG-QISIEEPGLQEVYEEVLSSGKLK 76 (431)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHTT-CCSSCCTTHHHHHHHHHHTTCEE
T ss_pred CCccEEEeeCHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHCC-CCCcCCCCHHHHHHhhcccCceE
Confidence 468999999999999999999999 999999999877 7888874 3445556542 145677
Q ss_pred ecCCHHHHhcCCCEEEEccCcch------------HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC-
Q 014757 134 ADPDLENAVKDANMLVFVTPHQF------------MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG- 200 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~~------------~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g- 200 (419)
+++++ .+||+||+|||+.. ++.+.+.+.+.++++++||..+ ++.+. +.+.+.+.+.+..|
T Consensus 77 ~ttd~----~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S-TV~pg--tt~~v~~~i~e~~g~ 149 (431)
T 3ojo_A 77 VSTTP----EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVES-TIAPK--TMDDFVKPVIENLGF 149 (431)
T ss_dssp EESSC----CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECS-CCCTT--HHHHTHHHHHHTTTC
T ss_pred EeCch----hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEec-CCChh--HHHHHHHHHHHHcCC
Confidence 87774 47999999999843 7888899999999999888776 56653 34444444433334
Q ss_pred ---CceEEEeCcchHH-----HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHH
Q 014757 201 ---VSCCVLMGANIAN-----EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAG 272 (419)
Q Consensus 201 ---~~~~v~~gp~~a~-----e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g 272 (419)
.++.+.++|.+.. +-. ..++.+ +++. +.+.+++++++|+..+-...+..++...|..|+..|
T Consensus 150 ~~~~d~~v~~~Pe~~~~G~A~~~~-~~p~~I-v~G~-~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N------- 219 (431)
T 3ojo_A 150 TIGEDIYLVHCPERVLPGKILEEL-VHNNRI-IGGV-TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMEN------- 219 (431)
T ss_dssp CBTTTEEEEECCCCCCTTSHHHHH-HHSCEE-EEES-SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHH-------
T ss_pred CcCCCeEEEECCCcCCCcchhhcc-cCCCEE-EEeC-CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHH-------
Confidence 3478889996533 211 224444 5555 788999999999987644444567888888776655
Q ss_pred hhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCc
Q 014757 273 FVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVA 318 (419)
Q Consensus 273 ~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~ 318 (419)
...+.....++|+..+|+++ |+|.+++.+..+..
T Consensus 220 ----------~~~a~~Ia~~nE~~~l~e~~--GiD~~~v~~~~~~~ 253 (431)
T 3ojo_A 220 ----------TYRDVNIALANELTKICNNL--NINVLDVIEMANKH 253 (431)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHTTS
T ss_pred ----------HHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHccC
Confidence 44566788999999999999 58998888765443
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.3e-19 Score=167.49 Aligned_cols=205 Identities=12% Similarity=0.078 Sum_probs=147.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||+++|..|.++| ++|++|+|++++ .+.+.+.|.. ...+++++++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g-------~~V~~~~~~~~~------~~~~~~~g~~------------~~~~~~~~~~ 55 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRG-------HYLIGVSRQQST------CEKAVERQLV------------DEAGQDLSLL 55 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHTTSC------------SEEESCGGGG
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHhCCCC------------ccccCCHHHh
Confidence 68999999999999999999999 899999998765 5556554421 1245677776
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE-----EEeCcchHH-
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC-----VLMGANIAN- 213 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~-----v~~gp~~a~- 213 (419)
.++|+||+|||++.+.++++++.+.++++++|+++++ +.. ... +.+.+.++. +.. +..||.++.
T Consensus 56 -~~~D~vi~av~~~~~~~~~~~l~~~~~~~~~vv~~~~-~~~-----~~~-~~~~~~~~~~~~~~p~~g~~~~gp~~a~~ 127 (279)
T 2f1k_A 56 -QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVAS-VKT-----AIA-EPASQLWSGFIGGHPMAGTAAQGIDGAEE 127 (279)
T ss_dssp -TTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEECCS-CCH-----HHH-HHHHHHSTTCEEEEECCCCSCSSGGGCCT
T ss_pred -CCCCEEEEECCHHHHHHHHHHHHhhCCCCCEEEECCC-CcH-----HHH-HHHHHHhCCEeecCcccCCccCCHHHHhH
Confidence 8999999999999999999999999988999998743 321 111 222222221 111 233566554
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHH-HHHHHHhhhcCC-CC----ccHHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNV-VAIAAGFVDGLE-MG----NNTKAAI 287 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni-~a~~~g~~~~~~-~~----~n~~~~l 287 (419)
++..+.++.++.....+.+..++++++|+..|+++++.++..+.+|.+++.|. .+++.++..+.. .+ .+....+
T Consensus 128 ~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l 207 (279)
T 2f1k_A 128 NLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNL 207 (279)
T ss_dssp TTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HHhCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhh
Confidence 34456555444433336888999999999999999999999999999999996 455555554432 23 2556678
Q ss_pred HHHHHHHHHHHH
Q 014757 288 MRIGLREMRAFS 299 (419)
Q Consensus 288 ~~~~~~E~~~la 299 (419)
+.+++.|+.+++
T Consensus 208 ~~~~~~~~~r~~ 219 (279)
T 2f1k_A 208 ASSGFRDTSRVG 219 (279)
T ss_dssp CCHHHHHHHTGG
T ss_pred cCCcccchhccc
Confidence 889999988776
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=156.92 Aligned_cols=243 Identities=12% Similarity=0.075 Sum_probs=155.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||+++|..|+++| ++|++|+|+.. ++..+.+.+.| +. ++++++
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g-------~~V~~~~~~~~----~~~~~~~~~~g--------------~~--~~~~~~ 53 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRG-------VEVVTSLEGRS----PSTIERARTVG--------------VT--ETSEED 53 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT-------CEEEECCTTCC----HHHHHHHHHHT--------------CE--ECCHHH
T ss_pred CeEEEEechHHHHHHHHHHHHCC-------CeEEEeCCccC----HHHHHHHHHCC--------------Cc--CCHHHH
Confidence 68999999999999999999999 89999887321 11145555433 22 456677
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC----ceEEEeCcchHHHHHh
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV----SCCVLMGANIANEIAV 217 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~----~~~v~~gp~~a~e~~~ 217 (419)
+.++|+||+|||+......+.++.+.+++ ++++++ ++.+. ..+.+.+.++. ...+..+|..+ ..
T Consensus 54 ~~~aDvvi~~v~~~~~~~~~~~~~~~~~~--~vi~~s-~~~~~------~~~~l~~~~~~~g~~~~~v~~~~~~~---~~ 121 (264)
T 1i36_A 54 VYSCPVVISAVTPGVALGAARRAGRHVRG--IYVDIN-NISPE------TVRMASSLIEKGGFVDAAIMGSVRRK---GA 121 (264)
T ss_dssp HHTSSEEEECSCGGGHHHHHHHHHTTCCS--EEEECS-CCCHH------HHHHHHHHCSSSEEEEEEECSCHHHH---GG
T ss_pred HhcCCEEEEECCCHHHHHHHHHHHHhcCc--EEEEcc-CCCHH------HHHHHHHHHhhCCeeeeeeeCCcccc---cc
Confidence 78999999999997655556788887765 777764 44321 12344444442 22344444322 24
Q ss_pred cCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc-HHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHH
Q 014757 218 EKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD-VEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMR 296 (419)
Q Consensus 218 g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d-i~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~ 296 (419)
|.+ +++++. +. +++++ |+..|.++...++ +....|.|...|.+ ...+..++.|+.
T Consensus 122 g~~--~~~~g~-~~---~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~-----------------~~~~~~~~~Ea~ 177 (264)
T 1i36_A 122 DIR--IIASGR-DA---EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSY-----------------TKGVSALLWETL 177 (264)
T ss_dssp GCE--EEEEST-TH---HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred CCe--EEecCC-cH---HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Confidence 542 344443 33 78888 9999988666554 66677777666653 235688999999
Q ss_pred HHHHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCC
Q 014757 297 AFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGW 376 (419)
Q Consensus 297 ~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv 376 (419)
.++++.| ++++ +.+... ...++.....+..+.. ++.. .|.+ ..++++.+++++++. +
T Consensus 178 ~la~~~G--~~~~-~~~~~~------~~~g~~~~~~~~~~~~-------~~~~----~g~~--~~~~~~~~~~~a~~~-v 234 (264)
T 1i36_A 178 TAAHRLG--LEED-VLEMLE------YTEGNDFRESAISRLK-------SSCI----HARR--RYEEMKEVQDMLAEV-I 234 (264)
T ss_dssp HHHHHTT--CHHH-HHHHHH------TTSCSSTHHHHHHHHH-------HHHH----THHH--HHHHHHHHHHHHHTT-S
T ss_pred HHHHHcC--CcHH-HHHHHH------HhcCccHHHHHHHHhc-------CCCC----cchh--hHHHHHHHHHHHHHh-c
Confidence 9999995 7765 433210 0001011111222211 1111 1222 478999999999999 9
Q ss_pred CcCCcHHHHHHHHHhC
Q 014757 377 LELFPLFATVHEICVG 392 (419)
Q Consensus 377 ~~~~P~~~~~~~~l~~ 392 (419)
++|+++.++++++.
T Consensus 235 --~~p~~~~v~~~~~~ 248 (264)
T 1i36_A 235 --DPVMPTCIIRIFDK 248 (264)
T ss_dssp --CCSHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHH
Confidence 99999999999864
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=163.24 Aligned_cols=169 Identities=12% Similarity=0.099 Sum_probs=121.1
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC--CCCcchHHHHHHhcCcCCccCCCCccCCCeEe
Q 014757 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET--LPSGEKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~--~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
-++.+|||+|||+|+||++||..|+++|... .++|++|+|+++ + .+.+++.| +..
T Consensus 18 ~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~---~~~V~v~~r~~~~~~------~~~l~~~G--------------~~~ 74 (322)
T 2izz_A 18 LYFQSMSVGFIGAGQLAFALAKGFTAAGVLA---AHKIMASSPDMDLAT------VSALRKMG--------------VKL 74 (322)
T ss_dssp ----CCCEEEESCSHHHHHHHHHHHHTTSSC---GGGEEEECSCTTSHH------HHHHHHHT--------------CEE
T ss_pred hccCCCEEEEECCCHHHHHHHHHHHHCCCCC---cceEEEECCCccHHH------HHHHHHcC--------------CEE
Confidence 3566789999999999999999999998211 158999999875 4 45665544 345
Q ss_pred cCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHH
Q 014757 135 DPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANE 214 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e 214 (419)
++++.+++.++|+||+|||+++++++++++.+.++++++||++++|+.. ..+.+.+.+.++....+...|+.+.+
T Consensus 75 ~~~~~e~~~~aDvVilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~-----~~l~~~l~~~~~~~~vv~~~p~~p~~ 149 (322)
T 2izz_A 75 TPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTI-----SSIEKKLSAFRPAPRVIRCMTNTPVV 149 (322)
T ss_dssp ESCHHHHHHHCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCH-----HHHHHHHHTTSSCCEEEEEECCGGGG
T ss_pred eCChHHHhccCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCH-----HHHHHHHhhcCCCCeEEEEeCCcHHH
Confidence 6677777889999999999999999999999999889999999999864 23344444433322344455666555
Q ss_pred HHhcCceeEEEeec-CCHHHHHHHHHHhCCCCcEEEEcCcHH
Q 014757 215 IAVEKFSEATVGYR-DNREIAEKWVQLFSTPYFMVTAVQDVE 255 (419)
Q Consensus 215 ~~~g~~~~~~~~~~-~~~~~~~~l~~ll~~~g~~~~~~~di~ 255 (419)
+..|. + +..++. .+.+..++++++|+..|..+++.+|..
T Consensus 150 ~~~g~-~-v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~ 189 (322)
T 2izz_A 150 VREGA-T-VYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 189 (322)
T ss_dssp GTCEE-E-EEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGH
T ss_pred HcCCe-E-EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHH
Confidence 54443 2 222322 237888999999999999888776653
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-18 Score=176.61 Aligned_cols=260 Identities=10% Similarity=-0.022 Sum_probs=167.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+|+|||+|.||++||..|+++| ++|++|+|++++ ++.+.+ ... + .++..++++++
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G-------~~V~v~dr~~~~------~~~l~~~~~~------~----~gi~~~~s~~e 67 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHG-------FTVCAYNRTQSK------VDHFLANEAK------G----KSIIGATSIED 67 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSHH------HHHHHHTTTT------T----SSEECCSSHHH
T ss_pred CCEEEEeeHHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHccccc------C----CCeEEeCCHHH
Confidence 48999999999999999999999 999999999876 666665 210 0 13566788888
Q ss_pred HhcC---CCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHH
Q 014757 141 AVKD---ANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIAN 213 (419)
Q Consensus 141 a~~~---aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~ 213 (419)
++.. +|+||+|||+ ..++++++++.+.++++++||+++|+.... ...+.+.+.+ .|.+ ..+..+|..+.
T Consensus 68 ~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~---~~~l~~~l~~-~g~~~v~~pVsgg~~~a~ 143 (497)
T 2p4q_A 68 FISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPD---SNRRYEELKK-KGILFVGSGVSGGEEGAR 143 (497)
T ss_dssp HHHTSCSSCEEEECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHH---HHHHHHHHHH-TTCEEEEEEEESHHHHHH
T ss_pred HHhcCCCCCEEEEEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhH---HHHHHHHHHH-cCCceeCCCcccChhHhh
Confidence 7776 9999999999 689999999999999999999999876532 1223333433 2433 23344444333
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE------EEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHH
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM------VTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAI 287 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~------~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l 287 (419)
.|. .+++ ++ +.+..++++++|+..+.+ +.+.++.-...+. |+.+|.....
T Consensus 144 ---~G~--~im~-gg-~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~-----------------Kl~~N~~~~~ 199 (497)
T 2p4q_A 144 ---YGP--SLMP-GG-SEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYV-----------------KMVHNGIEYG 199 (497)
T ss_dssp ---HCC--EEEE-EE-CGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHH-----------------HHHHHHHHHH
T ss_pred ---cCC--eEEe-cC-CHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHH-----------------HHHHHHHHHH
Confidence 343 3344 44 678889999999877766 3333332222233 3345566677
Q ss_pred HHHHHHHHHHHHHH-hcCCCCccchhcccC---CcceeecccCcccHHHHHHhhhccCCCCHH-HHHHHHhcCCeeehHH
Q 014757 288 MRIGLREMRAFSKL-LFSSVKDSTFFESCG---VADLITTCLGGRNRKVAEAFAKNEGKRSFD-DLEAEMLQGQKLQGVS 362 (419)
Q Consensus 288 ~~~~~~E~~~la~a-~g~g~~~~~~~~~~~---~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~-~~~~~~~~g~~~Eg~~ 362 (419)
+.++++|+.+++++ +| ++++++.+... .+++ .+.-.++ .+..+.+ ++ ++.. .+ ..+ .-.-+.|
T Consensus 200 ~~~~laEa~~l~~~~lG--l~~~~~~~~~~~w~~g~~--~S~l~~~--~~~~l~~-~d-~~~~~~v-d~i---~D~~~~K 267 (497)
T 2p4q_A 200 DMQLICEAYDIMKRLGG--FTDKEISDVFAKWNNGVL--DSFLVEI--TRDILKF-DD-VDGKPLV-EKI---MDTAGQK 267 (497)
T ss_dssp HHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTTTT--CBHHHHH--HHHHHTC-BC-TTSSBGG-GGS---CCCCCCC
T ss_pred HHHHHHHHHHHHHHccC--CCHHHHHHHHHHhcCCcc--ccHHHHH--HHHHHhc-CC-CCCccHH-HHH---HHhhccc
Confidence 88999999999999 75 78888776431 1111 0000122 2333443 21 1100 00 000 0001124
Q ss_pred HHH-HHHHHHHHcCCCcCCcHHHHH
Q 014757 363 TAR-EVYEVLSHRGWLELFPLFATV 386 (419)
Q Consensus 363 ~~~-~v~~~a~~~gv~~~~P~~~~~ 386 (419)
+.+ .+.+.|++.|+ ++|+++..
T Consensus 268 gtG~~~~~~A~~~Gv--~~P~~~~a 290 (497)
T 2p4q_A 268 GTGKWTAINALDLGM--PVTLIGEA 290 (497)
T ss_dssp SHHHHHHHHHHHHTC--CCHHHHHH
T ss_pred hHHHHHHHHHHHcCC--CCchHHHH
Confidence 444 57899999999 99999874
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=153.20 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=120.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc---eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD---EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~---~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
|.+|||+|||+|+||++++..|.++| + +|++|+|++++ .+.+.+.. ++..+
T Consensus 1 M~~~~I~iIG~G~mG~aia~~l~~~g-------~~~~~V~v~dr~~~~------~~~l~~~~-------------gi~~~ 54 (280)
T 3tri_A 1 MNTSNITFIGGGNMARNIVVGLIANG-------YDPNRICVTNRSLDK------LDFFKEKC-------------GVHTT 54 (280)
T ss_dssp -CCSCEEEESCSHHHHHHHHHHHHTT-------CCGGGEEEECSSSHH------HHHHHHTT-------------CCEEE
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCC-------CCCCeEEEEeCCHHH------HHHHHHHc-------------CCEEe
Confidence 34689999999999999999999999 6 89999999876 56665531 24566
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhcc-CCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHH
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGK-VNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIAN 213 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~-l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~ 213 (419)
++..+++.++|+||+|||++.++++++++.+. ++++++||++++|+.. +.+.+.++.+ ..+...|+.+.
T Consensus 55 ~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~---------~~l~~~l~~~~~vvr~mPn~p~ 125 (280)
T 3tri_A 55 QDNRQGALNADVVVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTT---------PLIEKWLGKASRIVRAMPNTPS 125 (280)
T ss_dssp SCHHHHHSSCSEEEECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCH---------HHHHHHHTCCSSEEEEECCGGG
T ss_pred CChHHHHhcCCeEEEEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCH---------HHHHHHcCCCCeEEEEecCChH
Confidence 78878889999999999999999999999998 8888899999999864 3455556532 24455677766
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcC
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQ 252 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~ 252 (419)
.+..|. +.++.+...+++..+.+.++|+..|..++..+
T Consensus 126 ~v~~g~-~~l~~~~~~~~~~~~~v~~l~~~iG~~~~v~~ 163 (280)
T 3tri_A 126 SVRAGA-TGLFANETVDKDQKNLAESIMRAVGLVIWVSS 163 (280)
T ss_dssp GGTCEE-EEEECCTTSCHHHHHHHHHHHGGGEEEEECSS
T ss_pred HhcCcc-EEEEeCCCCCHHHHHHHHHHHHHCCCeEEECC
Confidence 554442 22222322367899999999999997665533
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=145.42 Aligned_cols=173 Identities=11% Similarity=0.175 Sum_probs=126.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..+|||+|||+|.||+++|..|+++| ++|++|+|+++
T Consensus 17 ~~~~~I~iiG~G~mG~~la~~l~~~g-------~~V~~~~~~~~------------------------------------ 53 (209)
T 2raf_A 17 FQGMEITIFGKGNMGQAIGHNFEIAG-------HEVTYYGSKDQ------------------------------------ 53 (209)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECTTCC------------------------------------
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEcCCHH------------------------------------
Confidence 34689999999999999999999999 89999987631
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc-cCC-----CCcccHHHHHHhHhCCceEEEe-----
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME-VKR-----EGPCMISTLISEQLGVSCCVLM----- 207 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~-~~~-----~~~~~~~~~i~~~~g~~~~v~~----- 207 (419)
++.++|+||+|+|+.+++++++++.+.++ +++++++++|++ ++. .+...+.+.+.+.++. ..++.
T Consensus 54 --~~~~aD~vi~av~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~-~~vv~~~~~~ 129 (209)
T 2raf_A 54 --ATTLGEIVIMAVPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPD-SQVLKAFNTT 129 (209)
T ss_dssp --CSSCCSEEEECSCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTT-SEEEECSTTS
T ss_pred --HhccCCEEEEcCCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCCC-CcEEEeeecc
Confidence 24579999999999999999999988887 999999999997 220 0123446777776652 22222
Q ss_pred -CcchHHHHHhc-CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 014757 208 -GANIANEIAVE-KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNN 282 (419)
Q Consensus 208 -gp~~a~e~~~g-~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n 282 (419)
+|..+.+...+ .+..+.+++. +.+..++++++|+..|+++...+++....| +||+.++..++..+.+++.|
T Consensus 130 ~~p~~~~~~~~g~~~~~~~~~g~-~~~~~~~v~~ll~~~G~~~~~~~~i~~a~~---~K~i~~l~~~~~~~~g~g~~ 202 (209)
T 2raf_A 130 FAATLQSGQVNGKEPTTVLVAGN-DDSAKQRFTRALADSPLEVKDAGKLKRARE---LEAMGFMQMTLAASEQIGWT 202 (209)
T ss_dssp CHHHHHHSEETTTEECEEEEEES-CHHHHHHHHHHTTTSSCEEEEEESGGGHHH---HHHHHHHHHHHHHTTSSCTT
T ss_pred cHhhccccccCCCCCceeEEcCC-CHHHHHHHHHHHHHcCCceEeCCCHhHHHH---hcchHHHHHHHHHHcCCCch
Confidence 67776654344 2334455555 678899999999999999888888755444 56666666777766655543
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.8e-16 Score=145.73 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=115.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCc----eEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEec
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHD----EVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~----~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~ 135 (419)
+|||+|||+|.||.+++..|.++| + +|++|+|++++ .+.+.+ .| +..+
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g-------~~~~~~V~~~~r~~~~------~~~~~~~~g--------------~~~~ 54 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKN-------IVSSNQIICSDLNTAN------LKNASEKYG--------------LTTT 54 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT-------SSCGGGEEEECSCHHH------HHHHHHHHC--------------CEEC
T ss_pred CCeEEEECccHHHHHHHHHHHhCC-------CCCCCeEEEEeCCHHH------HHHHHHHhC--------------CEEe
Confidence 479999999999999999999999 7 99999998765 555543 23 3466
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHH
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANE 214 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e 214 (419)
+++++++.++|+||+|||++.++++++++.+.++++++||+.++|+.. +.+++.++.. ..+...|+.+..
T Consensus 55 ~~~~e~~~~aDvVilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~---------~~l~~~~~~~~~~v~~~p~~p~~ 125 (247)
T 3gt0_A 55 TDNNEVAKNADILILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSI---------ESTENAFNKKVKVVRVMPNTPAL 125 (247)
T ss_dssp SCHHHHHHHCSEEEECSCTTTHHHHC---CCSSCTTCEEEECSCCSCH---------HHHHHHHCSCCEEEEEECCGGGG
T ss_pred CChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCH---------HHHHHHhCCCCcEEEEeCChHHH
Confidence 788888889999999999999999999999999999999999998864 3455555432 234445666554
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
...|. +.++.+...+++.+++++++|+..|..++..++
T Consensus 126 ~~~g~-~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~e~ 163 (247)
T 3gt0_A 126 VGEGM-SALCPNEMVTEKDLEDVLNIFNSFGQTEIVSEK 163 (247)
T ss_dssp GTCEE-EEEEECTTCCHHHHHHHHHHHGGGEEEEECCGG
T ss_pred HcCce-EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHH
Confidence 44442 222332223788999999999999986665444
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=145.85 Aligned_cols=175 Identities=10% Similarity=0.113 Sum_probs=125.6
Q ss_pred CCCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEE-EecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCe
Q 014757 55 DDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRM-WVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNV 132 (419)
Q Consensus 55 ~~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l-~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i 132 (419)
.+..|.||||+|||+|.||.++|..|+++| ++|++ |+|++++ .+.+.+. +.. .
T Consensus 17 ~~~~m~mmkI~IIG~G~mG~~la~~l~~~g-------~~V~~v~~r~~~~------~~~l~~~~g~~------------~ 71 (220)
T 4huj_A 17 NLYFQSMTTYAIIGAGAIGSALAERFTAAQ-------IPAIIANSRGPAS------LSSVTDRFGAS------------V 71 (220)
T ss_dssp CTTGGGSCCEEEEECHHHHHHHHHHHHHTT-------CCEEEECTTCGGG------GHHHHHHHTTT------------E
T ss_pred chhhhcCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEECCCHHH------HHHHHHHhCCC------------c
Confidence 334466889999999999999999999999 89998 9998876 4555432 211 1
Q ss_pred EecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc-----cCCCCcccHHHHHHhHhCCceEEEe
Q 014757 133 VADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME-----VKREGPCMISTLISEQLGVSCCVLM 207 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~-----~~~~~~~~~~~~i~~~~g~~~~v~~ 207 (419)
..++. +++.++|+||+|||+..++++++++.+ + ++++||+++||++ .+..+.....+.+.+.++....+..
T Consensus 72 -~~~~~-~~~~~aDvVilavp~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~~ 147 (220)
T 4huj_A 72 -KAVEL-KDALQADVVILAVPYDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVKA 147 (220)
T ss_dssp -EECCH-HHHTTSSEEEEESCGGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEEE
T ss_pred -ccChH-HHHhcCCEEEEeCChHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEEC
Confidence 22333 457899999999999999999998877 5 5889999999995 1111123356777777764334444
Q ss_pred CcchHHHHHh-c-----CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHH
Q 014757 208 GANIANEIAV-E-----KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVEL 259 (419)
Q Consensus 208 gp~~a~e~~~-g-----~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~ 259 (419)
-|+....+.. + .+..+++++. +.+..++++++|+..|++++..+++....|
T Consensus 148 ~~~~~~~v~~~g~~~~~~~~~v~~~g~-~~~~~~~v~~l~~~~G~~~~~~G~l~~a~~ 204 (220)
T 4huj_A 148 FNTLPAAVLAADPDKGTGSRVLFLSGN-HSDANRQVAELISSLGFAPVDLGTLAASGP 204 (220)
T ss_dssp SCSSCHHHHTSCSBCSSCEEEEEEEES-CHHHHHHHHHHHHHTTCEEEECCSHHHHHH
T ss_pred CCCCCHHHhhhCcccCCCCeeEEEeCC-CHHHHHHHHHHHHHhCCCeEeeCChhhcch
Confidence 4554443333 1 1234556666 789999999999999999999988765443
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=147.44 Aligned_cols=251 Identities=13% Similarity=0.103 Sum_probs=153.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|.||+++|..|+++|. ++|++|+|++++ .+.+.+. | +..++++++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~------~~v~~~~r~~~~------~~~~~~~~g--------------~~~~~~~~~ 54 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGG------YRIYIANRGAEK------RERLEKELG--------------VETSATLPE 54 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS------CEEEEECSSHHH------HHHHHHHTC--------------CEEESSCCC
T ss_pred CEEEEECchHHHHHHHHHHHHCCC------CeEEEECCCHHH------HHHHHHhcC--------------CEEeCCHHH
Confidence 689999999999999999999882 589999998765 5666543 3 234556666
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHhcC
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEK 219 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~g~ 219 (419)
++ ++|+||+|||+..++++++++.+ + +++|+++++|+.+ +.+.+.++.. ..+...|+.+.....|.
T Consensus 55 ~~-~~D~vi~~v~~~~~~~v~~~l~~--~-~~ivv~~~~g~~~---------~~l~~~~~~~~~~v~~~~~~~~~~~~g~ 121 (263)
T 1yqg_A 55 LH-SDDVLILAVKPQDMEAACKNIRT--N-GALVLSVAAGLSV---------GTLSRYLGGTRRIVRVMPNTPGKIGLGV 121 (263)
T ss_dssp CC-TTSEEEECSCHHHHHHHHTTCCC--T-TCEEEECCTTCCH---------HHHHHHTTSCCCEEEEECCGGGGGTCEE
T ss_pred Hh-cCCEEEEEeCchhHHHHHHHhcc--C-CCEEEEecCCCCH---------HHHHHHcCCCCcEEEEcCCHHHHHcCce
Confidence 67 99999999999999999887766 5 8999999998864 3445555421 12222466555444443
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc-CcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Q 014757 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAV-QDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~-~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
. .+..+...+.+..++++++|+..|..++.. +| .+.++.++. |. .+.....+..++.|+
T Consensus 122 ~-~i~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~--------~~~~~~al~-g~-------~~~~~~~~~~~l~e~--- 181 (263)
T 1yqg_A 122 S-GMYAEAEVSETDRRIADRIMKSVGLTVWLDDEE--------KMHGITGIS-GS-------GPAYVFYLLDALQNA--- 181 (263)
T ss_dssp E-EEECCTTSCHHHHHHHHHHHHTTEEEEECSSTT--------HHHHHHHHT-TS-------HHHHHHHHHHHHHHH---
T ss_pred E-EEEcCCCCCHHHHHHHHHHHHhCCCEEEeCChh--------hccHHHHHH-cc-------HHHHHHHHHHHHHHH---
Confidence 2 222222226788999999999999888655 44 122232221 11 112233444555555
Q ss_pred HHHhcCCCCccchhcccCCcceeecccCcccHHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCc
Q 014757 299 SKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLE 378 (419)
Q Consensus 299 a~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~ 378 (419)
+++.| ++++++.+... ... ....+.+...+ .++..+... ....+. .....++..++.|+
T Consensus 182 ~~~~G--~~~~~~~~~~~------~~~----~~~~~~~~~~~--~~~~~~~~~----~~~~~~-~~~~~l~~l~~~~~-- 240 (263)
T 1yqg_A 182 AIRQG--FDMAEARALSL------ATF----KGAVALAEQTG--EDFEKLQKN----VTSKGG-TTHEAVEAFRRHRV-- 240 (263)
T ss_dssp HHHTT--CCHHHHHHHHH------HHH----HHHHHHHHHHC--CCHHHHHHH----TCCTTS-HHHHHHHHHHHTTH--
T ss_pred HHHcC--CCHHHHHHHHH------HHH----HHHHHHHHhcC--CCHHHHHHh----cCCCCh-hHHHHHHHHHHCCH--
Confidence 78884 77776654320 000 01111122112 223222221 122222 33344455578898
Q ss_pred CCcHHHHHHHHHhC
Q 014757 379 LFPLFATVHEICVG 392 (419)
Q Consensus 379 ~~P~~~~~~~~l~~ 392 (419)
+.|+.+.+++.+..
T Consensus 241 ~~~~~~a~~~~~~~ 254 (263)
T 1yqg_A 241 AEAISEGVCACVRR 254 (263)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=137.71 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=112.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|.+|||+|||+|+||+++|..|+++|... .++|++|+|++++ .| +..++++
T Consensus 2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~---~~~v~~~~~~~~~------------~g--------------~~~~~~~ 52 (262)
T 2rcy_A 2 MENIKLGFMGLGQMGSALAHGIANANIIK---KENLFYYGPSKKN------------TT--------------LNYMSSN 52 (262)
T ss_dssp CSSSCEEEECCSHHHHHHHHHHHHHTSSC---GGGEEEECSSCCS------------SS--------------SEECSCH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCCC---CCeEEEEeCCccc------------Cc--------------eEEeCCH
Confidence 45689999999999999999999988110 0489999998642 12 3456677
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHh
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAV 217 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~ 217 (419)
++++.++|+||+|||++.++++++++.+.+ ++++|++.++|+.+ +.+++.++.. -.+...|+++.....
T Consensus 53 ~~~~~~~D~vi~~v~~~~~~~v~~~l~~~l-~~~~vv~~~~gi~~---------~~l~~~~~~~~~~v~~~p~~p~~~~~ 122 (262)
T 2rcy_A 53 EELARHCDIIVCAVKPDIAGSVLNNIKPYL-SSKLLISICGGLNI---------GKLEEMVGSENKIVWVMPNTPCLVGE 122 (262)
T ss_dssp HHHHHHCSEEEECSCTTTHHHHHHHSGGGC-TTCEEEECCSSCCH---------HHHHHHHCTTSEEEEEECCGGGGGTC
T ss_pred HHHHhcCCEEEEEeCHHHHHHHHHHHHHhc-CCCEEEEECCCCCH---------HHHHHHhCCCCcEEEECCChHHHHcC
Confidence 777889999999999999999999999888 68899999999874 2444555532 233445666655545
Q ss_pred cCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 218 EKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 218 g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
| .+.++.+...+.+..++++++|+..|..++..++
T Consensus 123 g-~~~~~~~~~~~~~~~~~~~~ll~~~G~~~~~~~~ 157 (262)
T 2rcy_A 123 G-SFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEK 157 (262)
T ss_dssp E-EEEEEECTTCCHHHHHHHHHHHHTSEEEEECCGG
T ss_pred C-eEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHH
Confidence 5 3333333223678899999999999974444444
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-17 Score=156.64 Aligned_cols=174 Identities=10% Similarity=0.039 Sum_probs=121.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCc--eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHD--EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
||||+|||+|.||+++|..|.++| + +|++|+|++++ .+.+.+.|.. ...++++
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g-------~~~~V~~~d~~~~~------~~~~~~~g~~------------~~~~~~~ 55 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSG-------FKGKIYGYDINPES------ISKAVDLGII------------DEGTTSI 55 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTT-------CCSEEEEECSCHHH------HHHHHHTTSC------------SEEESCG
T ss_pred CcEEEEEecCHHHHHHHHHHHhcC-------CCcEEEEEeCCHHH------HHHHHHCCCc------------ccccCCH
Confidence 579999999999999999999999 7 89999998654 4555554421 1234667
Q ss_pred HHHhc-CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEE-----EeCc
Q 014757 139 ENAVK-DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCV-----LMGA 209 (419)
Q Consensus 139 ~ea~~-~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v-----~~gp 209 (419)
++++. ++|+||+|||+..+.++++++.+.++++++|++++++-.. ..+.+.+.++. +... ..||
T Consensus 56 ~~~~~~~aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~-------~~~~l~~~l~~~~v~~~p~~~~~~~gp 128 (281)
T 2g5c_A 56 AKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGK-------LVYDLENILGKRFVGGHPIAGTEKSGV 128 (281)
T ss_dssp GGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTH-------HHHHHHHHHGGGEECEEEECCCSCCSG
T ss_pred HHHhcCCCCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEECCCCcHH-------HHHHHHHhccccceeeccccCCccCCh
Confidence 67788 9999999999999999999999888889988887653211 11233333321 1111 2355
Q ss_pred chHH-HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHH
Q 014757 210 NIAN-EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNV 266 (419)
Q Consensus 210 ~~a~-e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni 266 (419)
..+. ++..+.++.++.....+.+..++++++|+..|++++..++..+..|.++..|.
T Consensus 129 ~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~ 186 (281)
T 2g5c_A 129 EYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHL 186 (281)
T ss_dssp GGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHH
T ss_pred hhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHH
Confidence 5543 33455444333321237888999999999999998888887777776665443
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.8e-16 Score=144.10 Aligned_cols=186 Identities=11% Similarity=0.065 Sum_probs=121.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC--CCc--chH----HHHHHhcCcCCccCCCCccC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL--PSG--EKL----TDVINRTNENVKYLPGIKLG 129 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~--~~~--~~l----~~~i~~~g~~~~~~~~~~l~ 129 (419)
....|||+|||+|.||+++|..|+++| ++|++|+|++++ ... ++. .+.+.+. +
T Consensus 16 ~~~~~kIgiIG~G~mG~alA~~L~~~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~------ 76 (245)
T 3dtt_A 16 YFQGMKIAVLGTGTVGRTMAGALADLG-------HEVTIGTRDPKATLARAEPDAMGAPPFSQWLPE------H------ 76 (245)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCHHHHHTCC-------CCHHHHGGG------S------
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCChhhhhhhhhhhhhcchhhhHHHhh------c------
Confidence 445689999999999999999999999 999999998642 000 000 0111111 0
Q ss_pred CCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHH-hccCCCCcEEEEeecCcc--------cCCCCcccHHHHHHhHhC
Q 014757 130 KNVVADPDLENAVKDANMLVFVTPHQFMEGICKRL-VGKVNGDVEAISLIKGME--------VKREGPCMISTLISEQLG 200 (419)
Q Consensus 130 ~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l-~~~l~~~tiivs~~nGi~--------~~~~~~~~~~~~i~~~~g 200 (419)
..+ .++++++++.++|+||+|||+....+++.++ .+.+ ++++||+++||+. .++.+.....+.+++.++
T Consensus 77 ~~~-~~~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~ 154 (245)
T 3dtt_A 77 PHV-HLAAFADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP 154 (245)
T ss_dssp TTC-EEEEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST
T ss_pred Cce-eccCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC
Confidence 012 3456777888999999999999999999888 7776 7999999998762 223344567788888765
Q ss_pred CceEEEeCcchHHHHH-------hcCceeEEEeecCCHHHHHHHHHHhCCCCcE-EEEcCcHHHHHHHHHHHHH
Q 014757 201 VSCCVLMGANIANEIA-------VEKFSEATVGYRDNREIAEKWVQLFSTPYFM-VTAVQDVEGVELCGTLKNV 266 (419)
Q Consensus 201 ~~~~v~~gp~~a~e~~-------~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~-~~~~~di~~~e~~~al~Ni 266 (419)
..-.+...+.....+. .+ +..+.+++. +.+..++++++|+..|+. +...+++......|.+.|+
T Consensus 155 ~~~vv~~~~~~~a~v~~~~~~a~~g-~~~~~v~g~-d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~ 226 (245)
T 3dtt_A 155 EAKVVKTLNTMNASLMVDPGRAAGG-DHSVFVSGN-DAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPV 226 (245)
T ss_dssp TSEEEECSTTSCHHHHHCGGGTGGG-CCCEEEECS-CHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHH
T ss_pred CCeEEEeecccCHHHhcCccccCCC-CeeEEEECC-CHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHH
Confidence 3212222222111111 22 233455555 789999999999999974 4556666555556666665
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-16 Score=150.51 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=115.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.|.+|||+|||+|.||+++|..|+++|. .++|++|+|+++. .+.+.+.|.. ...+++
T Consensus 3 ~M~~~~I~iIG~G~mG~~~a~~l~~~g~-----~~~V~~~d~~~~~------~~~~~~~g~~------------~~~~~~ 59 (290)
T 3b1f_A 3 AMEEKTIYIAGLGLIGASLALGIKRDHP-----HYKIVGYNRSDRS------RDIALERGIV------------DEATAD 59 (290)
T ss_dssp GGCCCEEEEECCSHHHHHHHHHHHHHCT-----TSEEEEECSSHHH------HHHHHHTTSC------------SEEESC
T ss_pred ccccceEEEEeeCHHHHHHHHHHHhCCC-----CcEEEEEcCCHHH------HHHHHHcCCc------------ccccCC
Confidence 3567899999999999999999999841 1799999998755 4555554421 024566
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhcc-CCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ce---EEE----
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGK-VNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SC---CVL---- 206 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~-l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~---~v~---- 206 (419)
+++++.++|+||+|||+...+++++++.+. ++++++|++++++... ..+.+.+.++. ++ ...
T Consensus 60 ~~~~~~~aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~-------~~~~l~~~l~~~~~~~v~~~P~~g~~ 132 (290)
T 3b1f_A 60 FKVFAALADVIILAVPIKKTIDFIKILADLDLKEDVIITDAGSTKYE-------IVRAAEYYLKDKPVQFVGSHPMAGSH 132 (290)
T ss_dssp TTTTGGGCSEEEECSCHHHHHHHHHHHHTSCCCTTCEEECCCSCHHH-------HHHHHHHHHTTSSCEEEEEEEC----
T ss_pred HHHhhcCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEEECCCCchH-------HHHHHHHhccccCCEEEEeCCcCCCC
Confidence 666778999999999999999999999998 8889999877653221 12344444432 21 111
Q ss_pred -eCcchHH-HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHH
Q 014757 207 -MGANIAN-EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEG 256 (419)
Q Consensus 207 -~gp~~a~-e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~ 256 (419)
.||..+. ++..|.++.++.....+.+..++++++|+..|.+++..++...
T Consensus 133 ~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~~ 184 (290)
T 3b1f_A 133 KSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDAAEH 184 (290)
T ss_dssp -CCTTSCCTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCHHHH
T ss_pred cchHHHhhHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHH
Confidence 1444332 3344544444443323667889999999999999877765443
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=149.31 Aligned_cols=172 Identities=11% Similarity=0.038 Sum_probs=119.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc--eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD--EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+.+|||+|||+|.||+++|..|.++| + +|++|+|+++. .+...+.|.. ...++
T Consensus 31 ~~~~kI~IIG~G~mG~slA~~l~~~G-------~~~~V~~~dr~~~~------~~~a~~~G~~------------~~~~~ 85 (314)
T 3ggo_A 31 LSMQNVLIVGVGFMGGSFAKSLRRSG-------FKGKIYGYDINPES------ISKAVDLGII------------DEGTT 85 (314)
T ss_dssp CSCSEEEEESCSHHHHHHHHHHHHTT-------CCSEEEEECSCHHH------HHHHHHTTSC------------SEEES
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCC-------CCCEEEEEECCHHH------HHHHHHCCCc------------chhcC
Confidence 34589999999999999999999999 7 99999998755 4555554421 13456
Q ss_pred CHHH-HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEe-----
Q 014757 137 DLEN-AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLM----- 207 (419)
Q Consensus 137 ~~~e-a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~----- 207 (419)
++++ ++.++|+||+|||...+.++++++.+.++++++|++++..-. .+.+.+.+.++.. ...+.
T Consensus 86 ~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d~~Svk~-------~~~~~~~~~l~~~~v~~hPm~G~e~s 158 (314)
T 3ggo_A 86 SIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKG-------KLVYDLENILGKRFVGGHPIAGTEKS 158 (314)
T ss_dssp CTTGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEECCSCCT-------HHHHHHHHHHGGGEECEEECCCCCCC
T ss_pred CHHHHhhccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEECCCCcH-------HHHHHHHHhcCCCEEecCcccCCccc
Confidence 7777 789999999999999999999999999999999998753211 1123333333211 12333
Q ss_pred CcchHH-HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHH
Q 014757 208 GANIAN-EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGT 262 (419)
Q Consensus 208 gp~~a~-e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~a 262 (419)
||..+. +++.|.++.++.....+.+.+++++++|+..|.+++..+.-..+...+.
T Consensus 159 G~~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~ 214 (314)
T 3ggo_A 159 GVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGV 214 (314)
T ss_dssp SGGGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHH
T ss_pred chhhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHH
Confidence 344333 3445654433332223788999999999999988877766555544433
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=137.32 Aligned_cols=165 Identities=10% Similarity=0.021 Sum_probs=115.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
+|||+|||+|.||..++..|+++| ++ |.+|+|++++ .+.+.+.. ++..+++++
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g-------~~~v~~~~~~~~~------~~~~~~~~-------------g~~~~~~~~ 63 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKG-------FRIVQVYSRTEES------ARELAQKV-------------EAEYTTDLA 63 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHT-------CCEEEEECSSHHH------HHHHHHHT-------------TCEEESCGG
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC-------CeEEEEEeCCHHH------HHHHHHHc-------------CCceeCCHH
Confidence 579999999999999999999999 78 8999998765 45555431 134567777
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEE----EeCcchHHH
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCV----LMGANIANE 214 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v----~~gp~~a~e 214 (419)
+++.++|+||+|||+..++++++++.+.++++++++++++|++.+ . +.+.++. .... +.|+...
T Consensus 64 ~~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~-----~----l~~~~~~~~~~~~~~~~~g~~~~-- 132 (266)
T 3d1l_A 64 EVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAGSIPMN-----V----WEGHVPHYGVFYPMQTFSKQREV-- 132 (266)
T ss_dssp GSCSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEECCTTSCGG-----G----STTTCSSEEEEEECCCC---CCC--
T ss_pred HHhcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEECCCCCchH-----H----HHHHHHhccCcCCceecCCCchh--
Confidence 777899999999999999999999998888999999999988753 1 2222221 1111 1122111
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHH---HHHHHHHHHH
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVE---GVELCGTLKN 265 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~---~~e~~~al~N 265 (419)
...+. .+++.+. +++..++++++|+..|.+++..++.. .+.|.++..|
T Consensus 133 ~~~~~--~~~v~~~-~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 183 (266)
T 3d1l_A 133 DFKEI--PFFIEAS-STEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCN 183 (266)
T ss_dssp CCTTC--CEEEEES-SHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHH
T ss_pred hcCCC--eEEEecC-CHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHH
Confidence 11222 2344445 78889999999999998877776543 3345454444
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=143.45 Aligned_cols=166 Identities=11% Similarity=0.094 Sum_probs=113.7
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||||+|||+ |.||+++|..|+++| ++|++|+|+++. .+.+.+.|. ..+ ++.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g-------~~V~~~~r~~~~------~~~~~~~g~--------------~~~-~~~ 62 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSA-------HHLAAIEIAPEG------RDRLQGMGI--------------PLT-DGD 62 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSS-------SEEEEECCSHHH------HHHHHHTTC--------------CCC-CSS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-------CEEEEEECCHHH------HHHHHhcCC--------------CcC-CHH
Confidence 579999999 999999999999999 899999998755 455554331 122 445
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchH-------
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIA------- 212 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a------- 212 (419)
+++.++|+||+|||+..++++++++.+.++++++|+++++|...+. +.+..+....+...|...
T Consensus 63 ~~~~~aDvVi~av~~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~---------l~~~~~~~~~v~~~P~~~~~~~~~~ 133 (286)
T 3c24_A 63 GWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAG---------VMPERADITYFIGHPCHPPLFNDET 133 (286)
T ss_dssp GGGGTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEESCSHHHHHT---------CSCCCTTSEEEEEEECCSCSSCCCC
T ss_pred HHhcCCCEEEEcCCchHHHHHHHHHHHhCCCCCEEEECCCCchhHH---------HHhhhCCCeEEecCCCCcccccccc
Confidence 6678999999999999999999999999989999999998874321 111111111222444432
Q ss_pred -HHHHhcCc------eeE-EEeecCCHHHHHHHHHHhCCCCc---EEEEcCcHHHHHHHHHHH
Q 014757 213 -NEIAVEKF------SEA-TVGYRDNREIAEKWVQLFSTPYF---MVTAVQDVEGVELCGTLK 264 (419)
Q Consensus 213 -~e~~~g~~------~~~-~~~~~~~~~~~~~l~~ll~~~g~---~~~~~~di~~~e~~~al~ 264 (419)
.+...|.+ +.+ +..+. +.+..++++++|+..|. +++..+......+.+++.
T Consensus 134 ~~~~~~g~l~~~~~~~~i~~~~~~-~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~ 195 (286)
T 3c24_A 134 DPAARTDYHGGIAKQAIVCALMQG-PEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLS 195 (286)
T ss_dssp SHHHHTCSSSSSSCEEEEEEEEES-CTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHH
T ss_pred chhhccCcccccccceeeeeccCC-CHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHH
Confidence 22455632 222 22334 67889999999999998 666665433333324443
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-14 Score=131.19 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=106.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.||||+|||+|.||..++..|.+.| ++|.+|+|++++ .+.+.+. | +..++++
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g-------~~v~~~~~~~~~------~~~~~~~~g--------------~~~~~~~ 54 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTP-------HELIISGSSLER------SKEIAEQLA--------------LPYAMSH 54 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSS-------CEEEEECSSHHH------HHHHHHHHT--------------CCBCSSH
T ss_pred CccEEEEECCCHHHHHHHHHHHhCC-------CeEEEECCCHHH------HHHHHHHcC--------------CEeeCCH
Confidence 4589999999999999999999999 899999998765 4555432 3 2345678
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHh
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAV 217 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~ 217 (419)
++++.++|+||+|+|+..+++++..+ .+++++++.++|+.. +.+.+.++.. ..+...|+++.....
T Consensus 55 ~~~~~~~D~Vi~~v~~~~~~~v~~~l----~~~~~vv~~~~~~~~---------~~l~~~~~~~~~~v~~~p~~~~~~~~ 121 (259)
T 2ahr_A 55 QDLIDQVDLVILGIKPQLFETVLKPL----HFKQPIISMAAGISL---------QRLATFVGQDLPLLRIMPNMNAQILQ 121 (259)
T ss_dssp HHHHHTCSEEEECSCGGGHHHHHTTS----CCCSCEEECCTTCCH---------HHHHHHHCTTSCEEEEECCGGGGGTC
T ss_pred HHHHhcCCEEEEEeCcHhHHHHHHHh----ccCCEEEEeCCCCCH---------HHHHHhcCCCCCEEEEcCCchHHHcC
Confidence 78788999999999998888887654 368899999888764 2344444321 122344665554444
Q ss_pred cCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 218 EKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 218 g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
| ...++.+...+.+..++++++|+..|. +...++
T Consensus 122 g-~~~i~~~~~~~~~~~~~~~~ll~~~G~-~~~~~~ 155 (259)
T 2ahr_A 122 S-STALTGNALVSQELQARVRDLTDSFGS-TFDISE 155 (259)
T ss_dssp E-EEEEEECTTCCHHHHHHHHHHHHTTEE-EEECCG
T ss_pred c-eEEEEcCCCCCHHHHHHHHHHHHhCCC-EEEecH
Confidence 4 222333332367889999999999984 444443
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=137.45 Aligned_cols=203 Identities=14% Similarity=0.063 Sum_probs=131.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-------cC--cCCccCCCCccC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-------TN--ENVKYLPGIKLG 129 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-------~g--~~~~~~~~~~l~ 129 (419)
|.++||+|||+|.||+.+|..|+++| ++|++|+|+++. .+++.+.+.. .+ ..... .....
T Consensus 2 m~~~kV~VIGaG~mG~~iA~~la~~G-------~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~--~~~~~ 70 (283)
T 4e12_A 2 TGITNVTVLGTGVLGSQIAFQTAFHG-------FAVTAYDINTDA--LDAAKKRFEGLAAVYEKEVAGAADGA--AQKAL 70 (283)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSHHH--HHHHHHHHHHHHHHHHHHSTTCTTTH--HHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC-------CeEEEEeCCHHH--HHHHHHHHHHHHHHHHHhcccCCHHH--HHHHH
Confidence 45789999999999999999999999 999999998765 1111222111 01 10000 00011
Q ss_pred CCeEecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE-
Q 014757 130 KNVVADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC- 204 (419)
Q Consensus 130 ~~i~~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~- 204 (419)
.++..++++++++.+||+||+|+|.. ....+++++.+.+++++++++.++++.. +.+.+.++. ++.
T Consensus 71 ~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~---------~~la~~~~~~~~~ig 141 (283)
T 4e12_A 71 GGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLP---------SDLVGYTGRGDKFLA 141 (283)
T ss_dssp HHCEEESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---------HHHHHHHSCGGGEEE
T ss_pred cCeEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---------HHHHhhcCCCcceEE
Confidence 23567788888889999999999986 7888899999999999999998887753 222333332 111
Q ss_pred -EEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc-CcHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 014757 205 -VLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAV-QDVEGVELCGTLKNVVAIAAGFVDGLEMGNN 282 (419)
Q Consensus 205 -v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~-~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n 282 (419)
....|.. .+....++.+...+.+.++++.++++..|...... .+..+.
T Consensus 142 ~h~~~p~~-----~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~------------------------- 191 (283)
T 4e12_A 142 LHFANHVW-----VNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGY------------------------- 191 (283)
T ss_dssp EEECSSTT-----TSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTT-------------------------
T ss_pred EccCCCcc-----cCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCE-------------------------
Confidence 1112321 23333333333346889999999999988776664 442210
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccchhc
Q 014757 283 TKAAIMRIGLREMRAFSKLLFSSVKDSTFFE 313 (419)
Q Consensus 283 ~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~ 313 (419)
....+....++|+.++++.- +++++++..
T Consensus 192 i~nr~~~~~~~ea~~l~~~g--~~~~~~id~ 220 (283)
T 4e12_A 192 VLNSLLVPLLDAAAELLVDG--IADPETIDK 220 (283)
T ss_dssp THHHHHHHHHHHHHHHHHTT--SCCHHHHHH
T ss_pred EehHHHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 01123345688999998886 478887654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-14 Score=136.70 Aligned_cols=202 Identities=14% Similarity=0.067 Sum_probs=126.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH-------hcCcCCcc----CCCCcc
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN-------RTNENVKY----LPGIKL 128 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~-------~~g~~~~~----~~~~~l 128 (419)
.|+||+|||+|.||+++|..|+++| ++|++|+|+++. .+...+.+. +.|..... +.....
T Consensus 14 ~~~~I~VIG~G~mG~~iA~~la~~G-------~~V~~~d~~~~~--~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~ 84 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGAGIAQVAAATG-------HTVVLVDQTEDI--LAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKT 84 (302)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH--HHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCHHH--HHHHHHHHHHHHHHHHHcCCCCccccchhhHHHH
Confidence 4579999999999999999999999 999999998764 111111111 12210000 000001
Q ss_pred CCCeEecCCHHHHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE
Q 014757 129 GKNVVADPDLENAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC 204 (419)
Q Consensus 129 ~~~i~~~~~~~ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~ 204 (419)
..+++.++++++++.+||+||+|||... .+.+++++.+.++++++|++.++|+.+. .+.+.++. ++.
T Consensus 85 ~~~i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~---------~l~~~~~~~~~~~ 155 (302)
T 1f0y_A 85 LSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT---------SIANATTRQDRFA 155 (302)
T ss_dssp HHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH---------HHHTTSSCGGGEE
T ss_pred HhceEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH---------HHHHhcCCcccEE
Confidence 1246678888877899999999999853 5778889999898999999988887642 23332321 111
Q ss_pred --EEeCcchHHHHHhcCceeEEEee-cCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 014757 205 --VLMGANIANEIAVEKFSEATVGY-RDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGN 281 (419)
Q Consensus 205 --v~~gp~~a~e~~~g~~~~~~~~~-~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~ 281 (419)
....|.. .+... .++.+ ..+++.++++.++++..|..+....+..+ . +.+
T Consensus 156 g~h~~~P~~-----~~~~~-~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g-----~----------------i~n 208 (302)
T 1f0y_A 156 GLHFFNPVP-----VMKLV-EVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPG-----F----------------IVN 208 (302)
T ss_dssp EEEECSSTT-----TCCEE-EEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTT-----T----------------THH
T ss_pred EEecCCCcc-----cCceE-EEeCCCCCCHHHHHHHHHHHHHcCCceEEecCccc-----c----------------cHH
Confidence 1112321 12222 23333 23688999999999988876655444211 0 111
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCccchh
Q 014757 282 NTKAAIMRIGLREMRAFSKLLFSSVKDSTFF 312 (419)
Q Consensus 282 n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~ 312 (419)
.++...++|+.++++.. +++++++.
T Consensus 209 ----r~l~~~~~Ea~~l~~~g--~~~~~~id 233 (302)
T 1f0y_A 209 ----RLLVPYLMEAIRLYERG--DASKEDID 233 (302)
T ss_dssp ----HHHHHHHHHHHHHHHTT--SSCHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcC--CCCHHHHH
Confidence 22335689999999987 46777664
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=131.94 Aligned_cols=210 Identities=12% Similarity=0.057 Sum_probs=131.0
Q ss_pred cCCCCCCCCCCCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc
Q 014757 49 SFSSGSDDGVLHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK 127 (419)
Q Consensus 49 ~~~~~~~~~~~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~ 127 (419)
+...|..+.. .++||+||| +|.||+++|..|+++| ++|++|+|+++.
T Consensus 10 ~~~~~~~~~~-~~~~I~iIGg~G~mG~~la~~l~~~G-------~~V~~~~~~~~~------------------------ 57 (298)
T 2pv7_A 10 NQFGFKTINS-DIHKIVIVGGYGKLGGLFARYLRASG-------YPISILDREDWA------------------------ 57 (298)
T ss_dssp ---CCCCSCT-TCCCEEEETTTSHHHHHHHHHHHTTT-------CCEEEECTTCGG------------------------
T ss_pred hccCccccCC-CCCEEEEEcCCCHHHHHHHHHHHhCC-------CeEEEEECCccc------------------------
Confidence 4455544322 346999999 9999999999999999 899999986421
Q ss_pred cCCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCce---E
Q 014757 128 LGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSC---C 204 (419)
Q Consensus 128 l~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~---~ 204 (419)
++++++.++|+||+|||...+.++++++.+.++++++|++++ |+.. . ..+.+.+..+.++ .
T Consensus 58 ---------~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~~~~-svk~-----~-~~~~~~~~~~~~~v~~h 121 (298)
T 2pv7_A 58 ---------VAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLT-SVKR-----E-PLAKMLEVHTGAVLGLH 121 (298)
T ss_dssp ---------GHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECC-SCCH-----H-HHHHHHHHCSSEEEEEE
T ss_pred ---------CHHHHhcCCCEEEEeCCHHHHHHHHHHHHhhcCCCcEEEECC-CCCc-----H-HHHHHHHhcCCCEEeeC
Confidence 234567889999999999999999999999998899887764 3321 1 1223333333221 2
Q ss_pred EEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHH---HHHHHHHhh-hcCCCC
Q 014757 205 VLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKN---VVAIAAGFV-DGLEMG 280 (419)
Q Consensus 205 v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~N---i~a~~~g~~-~~~~~~ 280 (419)
.+.||.. +...|.++.++. +. +.+..++++++|+..|.+++..++...+.+.+..-| .+++..... ...+..
T Consensus 122 P~~g~~~--~~~~g~~~~l~~-~~-~~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~ 197 (298)
T 2pv7_A 122 PMFGADI--ASMAKQVVVRCD-GR-FPERYEWLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTFANGLHLSKQPIN 197 (298)
T ss_dssp ECSCTTC--SCCTTCEEEEEE-EE-CGGGTHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCCCCc--hhhcCCeEEEec-CC-CHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3344443 223454333333 23 567788999999999999888776666666655444 433333321 222222
Q ss_pred ccHHHHHHHHHHHHHHH-HHHHhcCCCCccchh
Q 014757 281 NNTKAAIMRIGLREMRA-FSKLLFSSVKDSTFF 312 (419)
Q Consensus 281 ~n~~~~l~~~~~~E~~~-la~a~g~g~~~~~~~ 312 (419)
......+...+++.... +++-.+ .+|+...
T Consensus 198 ~~~~~~la~~~f~~~~~~~~ria~--~~p~~~~ 228 (298)
T 2pv7_A 198 LANLLALSSPIYRLELAMIGRLFA--QDAELYA 228 (298)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT--SCHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHhc--CCHHHHH
Confidence 23445566777877333 233332 4565443
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=133.20 Aligned_cols=185 Identities=16% Similarity=0.110 Sum_probs=121.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
+.+||+|||+|.||+.||..|+ +| ++|++|||+++. .+...+. . .+ ....+++.+++++
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG-------~~V~v~d~~~~~------~~~~~~~-l-----~~-~~~~~i~~~~~~~ 69 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SK-------HEVVLQDVSEKA------LEAAREQ-I-----PE-ELLSKIEFTTTLE 69 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TT-------SEEEEECSCHHH------HHHHHHH-S-----CG-GGGGGEEEESSCT
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cC-------CEEEEEECCHHH------HHHHHHH-H-----HH-HHhCCeEEeCCHH
Confidence 4589999999999999999999 99 999999998765 3444332 0 00 0112366777887
Q ss_pred HHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--c---eEEEeCcchH
Q 014757 140 NAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--S---CCVLMGANIA 212 (419)
Q Consensus 140 ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~---~~v~~gp~~a 212 (419)
+ +.+||+||.|+|... ...++.++.+. +++++++.+.++.+. .+.+.... . ...+. |..
T Consensus 70 ~-~~~aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~---------~~a~~~~~~~r~~G~Hf~~-Pv~- 135 (293)
T 1zej_A 70 K-VKDCDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVD---------DIAERLDSPSRFLGVHWMN-PPH- 135 (293)
T ss_dssp T-GGGCSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHH---------HHHTTSSCGGGEEEEEECS-STT-
T ss_pred H-HcCCCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHH---------HHHHHhhcccceEeEEecC-ccc-
Confidence 6 789999999999843 45555777665 899988776666542 22222221 1 12222 432
Q ss_pred HHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHH
Q 014757 213 NEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGL 292 (419)
Q Consensus 213 ~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~ 292 (419)
.+....++.+...+++.++++.++++..|..+....|. ...+| +....+
T Consensus 136 ----~~~lveiv~g~~t~~~~~~~~~~l~~~lGk~~v~v~d~------fi~Nr---------------------ll~~~~ 184 (293)
T 1zej_A 136 ----VMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQ------SLVNR---------------------FNAAVL 184 (293)
T ss_dssp ----TCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESS------CHHHH---------------------HHHHHH
T ss_pred ----cCCEEEEECCCCCCHHHHHHHHHHHHHcCCeEEEeccc------ccHHH---------------------HHHHHH
Confidence 12222223333247899999999999988877665553 21222 223569
Q ss_pred HHHHHHHHHhcCCCCccchhc
Q 014757 293 REMRAFSKLLFSSVKDSTFFE 313 (419)
Q Consensus 293 ~E~~~la~a~g~g~~~~~~~~ 313 (419)
+|+..++++ | ++++++..
T Consensus 185 ~EA~~l~~~-G--v~~e~id~ 202 (293)
T 1zej_A 185 SEASRMIEE-G--VRAEDVDR 202 (293)
T ss_dssp HHHHHHHHH-T--CCHHHHHH
T ss_pred HHHHHHHHh-C--CCHHHHHH
Confidence 999999999 6 58887754
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=140.66 Aligned_cols=177 Identities=11% Similarity=0.084 Sum_probs=114.6
Q ss_pred CCCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcc-h---HHHHHHhcCcCCccCCCCccCC
Q 014757 55 DDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGE-K---LTDVINRTNENVKYLPGIKLGK 130 (419)
Q Consensus 55 ~~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~-~---l~~~i~~~g~~~~~~~~~~l~~ 130 (419)
....+.++||+|||+|.||+.+|..|+++| ++|++||+++++ .. . ..+...+.|.... ..-.....
T Consensus 48 ~~~~~~i~kVaVIGaG~MG~~IA~~la~aG-------~~V~l~D~~~e~--a~~~i~~~l~~~~~~G~l~~-~~~~~~~~ 117 (460)
T 3k6j_A 48 NSEAYDVNSVAIIGGGTMGKAMAICFGLAG-------IETFLVVRNEQR--CKQELEVMYAREKSFKRLND-KRIEKINA 117 (460)
T ss_dssp SCCCCCCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH--HHHHHHHHHHHHHHTTSCCH-HHHHHHHT
T ss_pred cCCcccCCEEEEECCCHHHHHHHHHHHHCC-------CeEEEEECcHHH--HHHHHHHHHHHHHHcCCCCH-HHHHHHhc
Confidence 334456789999999999999999999999 999999998752 10 0 0112222221000 00001234
Q ss_pred CeEecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--
Q 014757 131 NVVADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC-- 204 (419)
Q Consensus 131 ~i~~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~-- 204 (419)
+++.+++++ ++.+||+||+|||.. ..+.++.++.+.+++++++++.++++.+ ..+.+.+.. ++.
T Consensus 118 ~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i---------~~ia~~~~~p~r~iG~ 187 (460)
T 3k6j_A 118 NLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDL---------NEISSVLRDPSNLVGI 187 (460)
T ss_dssp TEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH---------HHHHTTSSSGGGEEEE
T ss_pred ceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhH---------HHHHHhccCCcceEEE
Confidence 577888886 588999999999973 4667889999999999999988877654 233333322 111
Q ss_pred EEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHH
Q 014757 205 VLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEG 256 (419)
Q Consensus 205 v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~ 256 (419)
-...|.. ......++.+...+++.++++.++++..|..+....|..+
T Consensus 188 HffnPv~-----~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pG 234 (460)
T 3k6j_A 188 HFFNPAN-----VIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKS 234 (460)
T ss_dssp ECCSSTT-----TCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCH
T ss_pred Eecchhh-----hCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccH
Confidence 1112322 1222223333334789999999999999988777777543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-13 Score=124.09 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=122.3
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|||+||| +|.||..++..|+++| ++|++|+|++++ .+.+.+. +. +.+ +..+. .++++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g-------~~V~~~~r~~~~------~~~~~~~~~~---~~~----~~~~~-~~~~~ 59 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG-------HEIVVGSRREEK------AEAKAAEYRR---IAG----DASIT-GMKNE 59 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-------CEEEEEESSHHH------HHHHHHHHHH---HHS----SCCEE-EEEHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHHhcc---ccc----cCCCC-hhhHH
Confidence 6899999 9999999999999999 899999998654 3444331 10 000 01233 24666
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCC-----CcccHHHHHHhHhCCceEEEe-CcchHH
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKRE-----GPCMISTLISEQLGVSCCVLM-GANIAN 213 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~-----~~~~~~~~i~~~~g~~~~v~~-gp~~a~ 213 (419)
+++.++|+||+|+|+..++++++++.+.++ +++++++++|+..++. ......+.+.+.++....+.. .|..+.
T Consensus 60 ~~~~~~D~Vi~~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~v~~~~~~~~~ 138 (212)
T 1jay_A 60 DAAEACDIAVLTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAA 138 (212)
T ss_dssp HHHHHCSEEEECSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHH
T ss_pred HHHhcCCEEEEeCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCCeEEEEccchHHH
Confidence 778899999999999999999988887774 8999999999974210 001223455555543212222 243333
Q ss_pred HHHh----cCceeEEEeecCCHHHHHHHHHHhCCC-CcEEEEcCcHHHHHHHHHHHHHH
Q 014757 214 EIAV----EKFSEATVGYRDNREIAEKWVQLFSTP-YFMVTAVQDVEGVELCGTLKNVV 267 (419)
Q Consensus 214 e~~~----g~~~~~~~~~~~~~~~~~~l~~ll~~~-g~~~~~~~di~~~e~~~al~Ni~ 267 (419)
.... +..+ ..+++. +++..+++.++|+.. |..+...+++....|.|.+.|.+
T Consensus 139 ~~~~~~~~~~~~-~~~~g~-~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~ 195 (212)
T 1jay_A 139 RFANLDEKFDWD-VPVCGD-DDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLI 195 (212)
T ss_dssp HHHCTTCCCCEE-EEEEES-CHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHH
T ss_pred HhhCcCCCCCcc-EEEECC-cHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHH
Confidence 3221 2222 233443 588899999999999 99887777777777877776654
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-14 Score=138.61 Aligned_cols=204 Identities=10% Similarity=0.063 Sum_probs=129.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
++.++||+|||+|.||++||..|.++| ++|++|+|+++. .+...+.| +..+++
T Consensus 5 ~~~~~kIgIIG~G~mG~slA~~L~~~G-------~~V~~~dr~~~~------~~~a~~~G--------------~~~~~~ 57 (341)
T 3ktd_A 5 KDISRPVCILGLGLIGGSLLRDLHAAN-------HSVFGYNRSRSG------AKSAVDEG--------------FDVSAD 57 (341)
T ss_dssp -CCSSCEEEECCSHHHHHHHHHHHHTT-------CCEEEECSCHHH------HHHHHHTT--------------CCEESC
T ss_pred cCCCCEEEEEeecHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcC--------------CeeeCC
Confidence 345689999999999999999999999 899999998755 45555544 224566
Q ss_pred HHHHhc----CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC-Cc---eEEEeCc
Q 014757 138 LENAVK----DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG-VS---CCVLMGA 209 (419)
Q Consensus 138 ~~ea~~----~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g-~~---~~v~~gp 209 (419)
+++++. ++|+||+|||...+.++++++.+. +++++|+++.. +- ..+.+.+.+..+ .. ...+.|+
T Consensus 58 ~~e~~~~a~~~aDlVilavP~~~~~~vl~~l~~~-~~~~iv~Dv~S-vk------~~i~~~~~~~~~~~~~v~~HPmaG~ 129 (341)
T 3ktd_A 58 LEATLQRAAAEDALIVLAVPMTAIDSLLDAVHTH-APNNGFTDVVS-VK------TAVYDAVKARNMQHRYVGSHPMAGT 129 (341)
T ss_dssp HHHHHHHHHHTTCEEEECSCHHHHHHHHHHHHHH-CTTCCEEECCS-CS------HHHHHHHHHTTCGGGEECEEECCSC
T ss_pred HHHHHHhcccCCCEEEEeCCHHHHHHHHHHHHcc-CCCCEEEEcCC-CC------hHHHHHHHHhCCCCcEecCCccccc
Confidence 666554 579999999999999999999886 78888887743 21 112233333221 11 2334443
Q ss_pred -----chHH-HHHhcCceeEEEeecCCHH--------HHHHHHHHhCCCCcEEEEcCcHHHHHHHHH---HHHHHHHHHH
Q 014757 210 -----NIAN-EIAVEKFSEATVGYRDNRE--------IAEKWVQLFSTPYFMVTAVQDVEGVELCGT---LKNVVAIAAG 272 (419)
Q Consensus 210 -----~~a~-e~~~g~~~~~~~~~~~~~~--------~~~~l~~ll~~~g~~~~~~~di~~~e~~~a---l~Ni~a~~~g 272 (419)
..+. +++.|.++.++.+...+.+ .++++.++|+..|.++...+.-.++...+. +.++++.+..
T Consensus 130 e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~aL~ 209 (341)
T 3ktd_A 130 ANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAETLA 209 (341)
T ss_dssp C-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cccchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2222 3445654433333222345 789999999999988777766555554443 5555555443
Q ss_pred hhhcCCCCccHHHHHHHHHHHHHHHH
Q 014757 273 FVDGLEMGNNTKAAIMRIGLREMRAF 298 (419)
Q Consensus 273 ~~~~~~~~~n~~~~l~~~~~~E~~~l 298 (419)
.... ........+...+++.++++
T Consensus 210 ~~~~--~~~~~~~~laa~gfrd~tRi 233 (341)
T 3ktd_A 210 IVGD--NGGALSLSLAAGSYRDSTRV 233 (341)
T ss_dssp HHHH--HTHHHHHHHCCHHHHHHTGG
T ss_pred HHhh--cchHHHHHHccccHHHHHHH
Confidence 2211 01122334556677777665
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=123.57 Aligned_cols=165 Identities=10% Similarity=0.088 Sum_probs=111.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+|||+|||+|.||.+++..|+++| ++|++++|++++ .+.+.+.+ +..+ +.+
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g-------~~V~~~~r~~~~------~~~~~~~g--------------~~~~-~~~ 78 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSG-------FKVVVGSRNPKR------TARLFPSA--------------AQVT-FQE 78 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSHHH------HHHHSBTT--------------SEEE-EHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcC--------------Ccee-cHH
Confidence 3579999999999999999999999 899999998654 44444322 2333 566
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCC-CcccHHHHHHhHhCC-ceEEEeCcchHHHHH-
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKRE-GPCMISTLISEQLGV-SCCVLMGANIANEIA- 216 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~-~~~~~~~~i~~~~g~-~~~v~~gp~~a~e~~- 216 (419)
+++.++|+||+|+|+..++++++ +.+.+ ++++++++++|+..+.. ......+.+.+.++. ++.....+..+....
T Consensus 79 ~~~~~~DvVi~av~~~~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~ 156 (215)
T 2vns_A 79 EAVSSPEVIFVAVFREHYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQA 156 (215)
T ss_dssp HHTTSCSEEEECSCGGGSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHT
T ss_pred HHHhCCCEEEECCChHHHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcc
Confidence 77889999999999987777765 65655 78999999999864210 002234566666553 211111121111111
Q ss_pred ---hcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHH
Q 014757 217 ---VEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEG 256 (419)
Q Consensus 217 ---~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~ 256 (419)
.+. +.+.+.+. +.+..++++++|+..|+++...+++..
T Consensus 157 ~~~~g~-~~~~~~g~-~~~~~~~v~~ll~~~G~~~~~~g~~~~ 197 (215)
T 2vns_A 157 GPRDGN-RQVPICGD-QPEAKRAVSEMALAMGFMPVDMGSLAS 197 (215)
T ss_dssp CSCSSC-CEEEEEES-CHHHHHHHHHHHHHTTCEEEECCSGGG
T ss_pred cccCCc-eeEEEecC-CHHHHHHHHHHHHHcCCceEeecchhh
Confidence 222 23456665 789999999999999999988887643
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.3e-15 Score=133.41 Aligned_cols=168 Identities=8% Similarity=0.030 Sum_probs=107.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..|||+|||+|+||.++|..|.++| ++|++|+|+++. +.+...+ +... +++
T Consensus 18 ~~~~I~iIG~G~mG~~la~~L~~~G-------~~V~~~~r~~~~-------~~~~~~g--------------~~~~-~~~ 68 (201)
T 2yjz_A 18 KQGVVCIFGTGDFGKSLGLKMLQCG-------YSVVFGSRNPQV-------SSLLPRG--------------AEVL-CYS 68 (201)
Confidence 3478999999999999999999999 899999998642 2222211 2233 555
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHh-c
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAV-E 218 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~-g 218 (419)
+++.++|+||+|||++++++++ ++.+. .++++||+++||+.... ....-.+.+.+.++....+..-|+....... |
T Consensus 69 ~~~~~aDvVilav~~~~~~~v~-~l~~~-~~~~ivI~~~~G~~~~~-~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g 145 (201)
T 2yjz_A 69 EAASRSDVIVLAVHREHYDFLA-ELADS-LKGRVLIDVSNNQKMNQ-YPESNAEYLAQLVPGAHVVKAFNTISAWALQSG 145 (201)
Confidence 6678899999999998888887 55543 46889999999985310 0000013333333321122222333222211 2
Q ss_pred ----CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHH
Q 014757 219 ----KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVELCG 261 (419)
Q Consensus 219 ----~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~~~ 261 (419)
..+ ..+.+. +.+..++++++|+..|+++...+++....|.+
T Consensus 146 ~l~g~~~-~~~~g~-~~~~~~~v~~ll~~~G~~~~~~G~l~~a~~~e 190 (201)
T 2yjz_A 146 TLDASRQ-VFVCGN-DSKAKDRVMDIARTLGLTPLDQGSLVAAKEIE 190 (201)
Confidence 111 234444 67788999999999999888777764444433
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-13 Score=137.88 Aligned_cols=171 Identities=15% Similarity=0.169 Sum_probs=109.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcC---cCCccCCC---CccCCCeE
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTN---ENVKYLPG---IKLGKNVV 133 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g---~~~~~~~~---~~l~~~i~ 133 (419)
.++||+|||+|.||+.+|..|+++| ++|++||++++. .+++.+.+.+.- ........ .....+++
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG-------~~V~l~D~~~e~--l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 74 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHG-------HQVLLYDISAEA--LTRAIDGIHARLNSRVTRGKLTAETCERTLKRLI 74 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTT-------CCEEEECSCHHH--HHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-------CeEEEEECCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcee
Confidence 4679999999999999999999999 999999998765 111112221100 00000000 01122466
Q ss_pred ecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--EEe
Q 014757 134 ADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--VLM 207 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v~~ 207 (419)
.+++++ ++.+||+||+|||+. ..+.++.++.+.+++++++++.++++.+. .+.+.+.. ++. -..
T Consensus 75 ~~~~~~-~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~---------~ia~~~~~p~~~ig~hf~ 144 (483)
T 3mog_A 75 PVTDIH-ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISIT---------AIAAEIKNPERVAGLHFF 144 (483)
T ss_dssp EECCGG-GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH---------HHTTTSSSGGGEEEEEEC
T ss_pred EeCCHH-HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHH---------HHHHHccCccceEEeeec
Confidence 778886 588999999999985 45788899999999999998888877642 23332221 111 111
Q ss_pred CcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014757 208 GANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 208 gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
.|.. ......++.+...+.+.++++.++++..|..+....|.
T Consensus 145 ~Pa~-----v~~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~ 186 (483)
T 3mog_A 145 NPAP-----VMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHST 186 (483)
T ss_dssp SSTT-----TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred Chhh-----hCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEecc
Confidence 2221 12223233333346889999999999998877666554
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=121.51 Aligned_cols=149 Identities=11% Similarity=0.094 Sum_probs=103.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..|||+|||+|.||+++|..|.++| ++|.+++|+++. ..+...+.| +..+ +++
T Consensus 15 ~~~~I~IIG~G~mG~alA~~L~~~G-------~~V~~~~~~~~~-----~~~~a~~~G--------------~~~~-~~~ 67 (338)
T 1np3_A 15 QGKKVAIIGYGSQGHAHACNLKDSG-------VDVTVGLRSGSA-----TVAKAEAHG--------------LKVA-DVK 67 (338)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTT-------CCEEEECCTTCH-----HHHHHHHTT--------------CEEE-CHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHCc-------CEEEEEECChHH-----HHHHHHHCC--------------CEEc-cHH
Confidence 3578999999999999999999999 899999998653 123333333 2344 777
Q ss_pred HHhcCCCEEEEccCcchHHHHHH-HHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh-C--CceE--EEeCcchHH
Q 014757 140 NAVKDANMLVFVTPHQFMEGICK-RLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL-G--VSCC--VLMGANIAN 213 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~-~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~-g--~~~~--v~~gp~~a~ 213 (419)
+++.++|+||+|||+....++++ ++.+.++++++|+++ +|+.. .+.... + .++. .-.||.++.
T Consensus 68 e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~~~ivi~~-~gv~~----------~~~~~~~~~~~~vv~~~P~gp~~a~ 136 (338)
T 1np3_A 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFA-HGFSI----------HYNQVVPRADLDVIMIAPKAPGHTV 136 (338)
T ss_dssp HHHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEES-CCHHH----------HTTSSCCCTTCEEEEEEESSCSHHH
T ss_pred HHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCCCCEEEEc-CCchh----------HHHhhcCCCCcEEEeccCCCCchhH
Confidence 78889999999999999999998 999999999999876 45531 111111 2 1221 125676653
Q ss_pred -HHHh---cCceeEEEeecCCHHHHHHHHHHhCCCCc
Q 014757 214 -EIAV---EKFSEATVGYRDNREIAEKWVQLFSTPYF 246 (419)
Q Consensus 214 -e~~~---g~~~~~~~~~~~~~~~~~~l~~ll~~~g~ 246 (419)
++.. |.+..++.....+.+..+.+.++++..|.
T Consensus 137 ~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~lG~ 173 (338)
T 1np3_A 137 RSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGG 173 (338)
T ss_dssp HHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHHTTH
T ss_pred HHHHhccCCCeEEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 4444 76654455443345667788888888887
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=126.96 Aligned_cols=170 Identities=10% Similarity=0.014 Sum_probs=107.6
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH-------hcCcCCccCCCCccCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN-------RTNENVKYLPGIKLGK 130 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~-------~~g~~~~~~~~~~l~~ 130 (419)
.+.++||+|||+|.||+.+|..|+++| ++|++|+++++. .+...+.+. +.|.. . +...-..
T Consensus 34 ~~~~~kV~VIGaG~MG~~iA~~la~~G-------~~V~l~D~~~~~--~~~~~~~i~~~l~~~~~~g~~-~--~~~~~~~ 101 (463)
T 1zcj_A 34 AQPVSSVGVLGLGTMGRGIAISFARVG-------ISVVAVESDPKQ--LDAAKKIITFTLEKEASRAHQ-N--GQASAKP 101 (463)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTT-------CEEEEECSSHHH--HHHHHHHHHHHHHHHHHHHHH-T--TCCCCCC
T ss_pred cCCCCEEEEECcCHHHHHHHHHHHhCC-------CeEEEEECCHHH--HHHHHHHHHHHHHHHHHcCCC-C--HHHHHHH
Confidence 456789999999999999999999999 999999998754 111111111 01100 0 0000011
Q ss_pred CeEecCCHHHHhcCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ce--E
Q 014757 131 NVVADPDLENAVKDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SC--C 204 (419)
Q Consensus 131 ~i~~~~~~~ea~~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~--~ 204 (419)
..+++++++ ++.+||+||+|||.. ....++.++.+.++++++|++.++++.. ..+.+.+.. .+ .
T Consensus 102 ~~~i~~~~~-~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~---------~~la~~~~~~~~~ig~ 171 (463)
T 1zcj_A 102 KLRFSSSTK-ELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNV---------DDIASSTDRPQLVIGT 171 (463)
T ss_dssp CEEEESCGG-GGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---------HHHHTTSSCGGGEEEE
T ss_pred HhhhcCCHH-HHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCH---------HHHHHHhcCCcceEEe
Confidence 234567774 578999999999985 3577888899989999999987776643 123332221 11 1
Q ss_pred EEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014757 205 VLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 205 v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
....|.. .+....++.+...+.+.++++.++++..|..+....|.
T Consensus 172 hf~~P~~-----~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~ 216 (463)
T 1zcj_A 172 HFFSPAH-----VMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNC 216 (463)
T ss_dssp EECSSTT-----TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCS
T ss_pred ecCCCcc-----cceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCC
Confidence 1123432 12222333333347899999999998888777666664
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-12 Score=136.83 Aligned_cols=172 Identities=12% Similarity=0.063 Sum_probs=109.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc---CcCCccCCC---CccCCCe
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT---NENVKYLPG---IKLGKNV 132 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~---g~~~~~~~~---~~l~~~i 132 (419)
..++||+|||+|.||+.+|..|+++| ++|++||++++. .+...+.+... .......+. .....++
T Consensus 310 ~~~~kV~VIGaG~MG~~iA~~la~aG-------~~V~l~D~~~~~--~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 380 (725)
T 2wtb_A 310 RKIKKVAIIGGGLMGSGIATALILSN-------YPVILKEVNEKF--LEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLL 380 (725)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHTTT-------CCEEEECSSHHH--HHHHHHHHHHHHHHTTC----CTTHHHHTTTSE
T ss_pred ccCcEEEEEcCCHhhHHHHHHHHhCC-------CEEEEEECCHHH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcce
Confidence 45689999999999999999999999 999999998764 11111111110 000000111 1123467
Q ss_pred EecCCHHHHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC--Cce--EEE
Q 014757 133 VADPDLENAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG--VSC--CVL 206 (419)
Q Consensus 133 ~~~~~~~ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g--~~~--~v~ 206 (419)
+.+++++ ++.+||+||+|||... .+.++.++.+.+++++++++.+++++++ .+.+... .++ ...
T Consensus 381 ~~~~d~~-~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~---------~la~~~~~p~~~iG~hf 450 (725)
T 2wtb_A 381 KGSLDYE-SFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN---------KIGERTKSQDRIVGAHF 450 (725)
T ss_dssp EEESSSG-GGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH---------HHTTTCSCTTTEEEEEE
T ss_pred EEeCCHH-HHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH---------HHHHHhcCCCCEEEecC
Confidence 7788884 6899999999999854 6678888999999999998888777542 2222221 121 111
Q ss_pred eCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014757 207 MGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 207 ~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
..|.. ......++.+...+.+.++++.++++..|..+....|.
T Consensus 451 ~~P~~-----~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 493 (725)
T 2wtb_A 451 FSPAH-----IMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNC 493 (725)
T ss_dssp CSSTT-----TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcc-----cCceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCC
Confidence 22332 12222233333347889999999999888776665553
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.6e-12 Score=133.71 Aligned_cols=171 Identities=12% Similarity=0.037 Sum_probs=108.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHH-------HhcCcCCccCCCCccCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVI-------NRTNENVKYLPGIKLGKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i-------~~~g~~~~~~~~~~l~~~ 131 (419)
..++||+|||+|.||+.+|..|+++| ++|++||++++.. +...+.+ .+.|.... ........+
T Consensus 312 ~~i~kV~VIGaG~MG~~iA~~la~aG-------~~V~l~D~~~~~~--~~~~~~i~~~l~~~~~~G~~~~-~~~~~~~~~ 381 (715)
T 1wdk_A 312 KDVKQAAVLGAGIMGGGIAYQSASKG-------TPILMKDINEHGI--EQGLAEAAKLLVGRVDKGRMTP-AKMAEVLNG 381 (715)
T ss_dssp CCCSSEEEECCHHHHHHHHHHHHHTT-------CCEEEECSSHHHH--HHHHHHHHHHHHHHHTTTSSCH-HHHHHHHHH
T ss_pred ccCCEEEEECCChhhHHHHHHHHhCC-------CEEEEEECCHHHH--HHHHHHHHHHHHHHHhcCCCCH-HHHHHHhcC
Confidence 45789999999999999999999999 9999999987641 1101111 11121000 000001123
Q ss_pred eEecCCHHHHhcCCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--E
Q 014757 132 VVADPDLENAVKDANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--V 205 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v 205 (419)
++.++++ +++.+||+||+|||... .+.++.++.+.+++++++++.++++++. .+.+.+.. ++. .
T Consensus 382 i~~~~d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~---------~la~~~~~~~~~ig~h 451 (715)
T 1wdk_A 382 IRPTLSY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS---------LLAKALKRPENFVGMH 451 (715)
T ss_dssp EEEESSS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH---------HHGGGCSCGGGEEEEE
T ss_pred eEEECCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH---------HHHHHhcCccceEEEE
Confidence 5677777 56889999999999743 6778889999999999999888877542 22222221 111 1
Q ss_pred EeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcH
Q 014757 206 LMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDV 254 (419)
Q Consensus 206 ~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di 254 (419)
...|.. .+....++.+...+++.++++.++++..|..+....|.
T Consensus 452 f~~P~~-----~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 495 (715)
T 1wdk_A 452 FFNPVH-----MMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDC 495 (715)
T ss_dssp CCSSTT-----TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred ccCCcc-----cCceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCC
Confidence 112322 12222233333347889999999999888776665553
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-11 Score=117.85 Aligned_cols=175 Identities=15% Similarity=0.082 Sum_probs=113.4
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH-------hcCcCCccCCCCccCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN-------RTNENVKYLPGIKLGK 130 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~-------~~g~~~~~~~~~~l~~ 130 (419)
.+...||+|||+|.||+.+|..++.+| ++|+++|++++. .++..+.++ +.|.............
T Consensus 3 ~p~~~~VaViGaG~MG~giA~~~a~~G-------~~V~l~D~~~~~--l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~ 73 (319)
T 3ado_A 3 SPAAGDVLIVGSGLVGRSWAMLFASGG-------FRVKLYDIEPRQ--ITGALENIRKEMKSLQQSGSLKGSLSAEEQLS 73 (319)
T ss_dssp ----CEEEEECCSHHHHHHHHHHHHTT-------CCEEEECSCHHH--HHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHH
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCC-------CeEEEEECCHHH--HHHHHHHHHHHHHHHHHcCCCCCccCHHHHHh
Confidence 345679999999999999999999999 999999998754 111112222 2221100000001113
Q ss_pred CeEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--
Q 014757 131 NVVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC-- 204 (419)
Q Consensus 131 ~i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~-- 204 (419)
.+..++++++++.+||+||-|+|. ....+++.+|.+.+++++|+.|.|+++.++ .+.+.... ++.
T Consensus 74 ~i~~~~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is---------~ia~~~~~p~r~ig~ 144 (319)
T 3ado_A 74 LISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPS---------KLFTGLAHVKQCIVA 144 (319)
T ss_dssp TEEEECCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHH---------HHHTTCTTGGGEEEE
T ss_pred hcccccchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccch---------hhhhhccCCCcEEEe
Confidence 467788998889999999999998 567888999999999999999999988752 23332222 222
Q ss_pred EEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEE-EEcCcHH
Q 014757 205 VLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMV-TAVQDVE 255 (419)
Q Consensus 205 v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~-~~~~di~ 255 (419)
-...|.+.. ....++.+...+.+.++++.++++..|... ....|..
T Consensus 145 HffNP~~~m-----~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~p 191 (319)
T 3ado_A 145 HPVNPPYYI-----PLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEID 191 (319)
T ss_dssp EECSSTTTC-----CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCT
T ss_pred cCCCCcccc-----chHHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCC
Confidence 223343211 122234444457889999999999888654 4555643
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-12 Score=122.25 Aligned_cols=147 Identities=8% Similarity=0.030 Sum_probs=84.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
||||+|||+|.||.+++..|+++ ++| .+|+|+++. .+.+.+. + + .++++
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~--------~~v~~v~~~~~~~------~~~~~~~~g--------------~-~~~~~ 52 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR--------YEIGYILSRSIDR------ARNLAEVYG--------------G-KAATL 52 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC------------CCCEECSSHHH------HHHHHHHTC--------------C-CCCSS
T ss_pred CceEEEEeCCHHHHHHHHHHHHc--------CcEEEEEeCCHHH------HHHHHHHcC--------------C-ccCCH
Confidence 47999999999999999999765 367 599998654 4555432 2 1 33455
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC---CceEEEeCcchHHHH
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG---VSCCVLMGANIANEI 215 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g---~~~~v~~gp~~a~e~ 215 (419)
++++.++|+||+|||+..+.+++.++. .++++|++++.++..+ .+.+... ++...+.++......
T Consensus 53 ~~~~~~~DvVilav~~~~~~~v~~~l~---~~~~ivi~~s~~~~~~---------~l~~~~~~~~~p~~~~~g~~~~~~~ 120 (276)
T 2i76_A 53 EKHPELNGVVFVIVPDRYIKTVANHLN---LGDAVLVHCSGFLSSE---------IFKKSGRASIHPNFSFSSLEKALEM 120 (276)
T ss_dssp CCCCC---CEEECSCTTTHHHHHTTTC---CSSCCEEECCSSSCGG---------GGCSSSEEEEEECSCC--CTTGGGC
T ss_pred HHHHhcCCEEEEeCChHHHHHHHHHhc---cCCCEEEECCCCCcHH---------HHHHhhccccchhhhcCCCchhHHH
Confidence 566678999999999999998887765 5788999888665432 1111111 111223342222221
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcC
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQ 252 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~ 252 (419)
..+.+ +.+.+ +.+..+.++++|+..|.++...+
T Consensus 121 ~~~~~--~~~~~--~~~~~~~~~~l~~~lG~~~~~v~ 153 (276)
T 2i76_A 121 KDQIV--FGLEG--DERGLPIVKKIAEEISGKYFVIP 153 (276)
T ss_dssp GGGCC--EEECC--CTTTHHHHHHHHHHHCSCEEECC
T ss_pred hCCCe--EEEEe--ChHHHHHHHHHHHHhCCCEEEEC
Confidence 23322 23333 34457777888877775544443
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=116.91 Aligned_cols=154 Identities=8% Similarity=0.052 Sum_probs=102.0
Q ss_pred CeEEEECcchHHHHHHHHHHHc------CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 62 SKVTVVGSGNWGSVASKLIASN------TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~------G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
+||+|||+|+||.++|..|.++ | ++|.+..|..+. . .+...+.|.... . ...
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G-------~~ViVg~r~~sk--s---~e~A~e~G~~v~--------d--~ta 112 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKIGLRKGSK--S---FDEARAAGFTEE--------S--GTL 112 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCC-------CEEEEEECTTCS--C---HHHHHHTTCCTT--------T--TCE
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCC-------CEEEEEeCCchh--h---HHHHHHCCCEEe--------c--CCC
Confidence 7999999999999999999999 8 898887776433 1 233334342110 0 012
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHh---HhCCc-eEEEeCcch
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISE---QLGVS-CCVLMGANI 211 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~---~~g~~-~~v~~gp~~ 211 (419)
.+++++++++|+||++||+....++++++.+.++++++ |+..-|+.. ..+.+ .++.+ -.++..|+.
T Consensus 113 ~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaI-Ls~AaGf~I---------~~le~~~i~~p~dv~VVrVmPNt 182 (525)
T 3fr7_A 113 GDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSI-LGLSHGFLL---------GHLQSAGLDFPKNISVIAVCPKG 182 (525)
T ss_dssp EEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCE-EEESSSHHH---------HHHHHTTCCCCTTSEEEEEEESS
T ss_pred CCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCe-EEEeCCCCH---------HHHhhhcccCCCCCcEEEEecCC
Confidence 46778899999999999998888899999999999998 577777753 24443 22333 245555555
Q ss_pred HHHH-------H-----hcCceeEEEeecCCHHHHHHHHHHhCCCCcE
Q 014757 212 ANEI-------A-----VEKFSEATVGYRDNREIAEKWVQLFSTPYFM 247 (419)
Q Consensus 212 a~e~-------~-----~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~ 247 (419)
+... + .|.+..+.+....+.+..+.+..++...|..
T Consensus 183 Pg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~ 230 (525)
T 3fr7_A 183 MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSP 230 (525)
T ss_dssp CHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCS
T ss_pred CchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCC
Confidence 4332 2 4555444443332345666677777776653
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.7e-10 Score=102.51 Aligned_cols=135 Identities=11% Similarity=0.020 Sum_probs=95.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+|||+|||+|.||++||..|.++| ++|++|++. +
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G-------~~V~~~~~~--------------------------------------~ 39 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVG-------HYVTVLHAP--------------------------------------E 39 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTT-------CEEEECSSG--------------------------------------G
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCC-------CEEEEecCH--------------------------------------H
Confidence 4589999999999999999999999 899999862 1
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcC
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEK 219 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~ 219 (419)
+ +.++| |+|||+..+.++++++.+.++++++|++++..+.. ..+... .+ .|.. .+-..|-. +.
T Consensus 40 ~-~~~aD--ilavP~~ai~~vl~~l~~~l~~g~ivvd~sgs~~~-----~vl~~~-~~-~g~~-fvg~HPm~------g~ 102 (232)
T 3dfu_A 40 D-IRDFE--LVVIDAHGVEGYVEKLSAFARRGQMFLHTSLTHGI-----TVMDPL-ET-SGGI-VMSAHPIG------QD 102 (232)
T ss_dssp G-GGGCS--EEEECSSCHHHHHHHHHTTCCTTCEEEECCSSCCG-----GGGHHH-HH-TTCE-EEEEEEEE------TT
T ss_pred H-hccCC--EEEEcHHHHHHHHHHHHHhcCCCCEEEEECCcCHH-----HHHHHH-Hh-CCCc-EEEeeeCC------CC
Confidence 1 34688 99999999999999999999999999998643321 222222 22 2332 11122321 22
Q ss_pred ceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHHHHH
Q 014757 220 FSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEGVEL 259 (419)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~~e~ 259 (419)
. ..+... +.+.++.++++++..|.+++..++-.+...
T Consensus 103 ~--~~i~a~-d~~a~~~l~~L~~~lG~~vv~~~~~~hd~~ 139 (232)
T 3dfu_A 103 R--WVASAL-DELGETIVGLLVGELGGSIVEIADDKRAQL 139 (232)
T ss_dssp E--EEEEES-SHHHHHHHHHHHHHTTCEECCCCGGGHHHH
T ss_pred c--eeeeCC-CHHHHHHHHHHHHHhCCEEEEeCHHHHhHH
Confidence 2 233344 678889999999999988877765444433
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.9e-10 Score=108.29 Aligned_cols=102 Identities=19% Similarity=0.289 Sum_probs=74.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCc--eEEEEecCCCCCCcchHHH--HHH-hcCcCCccCCCCccCCCeEec
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHD--EVRMWVFEETLPSGEKLTD--VIN-RTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~~~~~~~~~l~~--~i~-~~g~~~~~~~~~~l~~~i~~~ 135 (419)
+|||+|||+|+||+++|..|+++| + +|++++|++++ .+ .++ ..+.. +.+ +..+..+
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g-------~~~~V~l~d~~~~~------~~~~~~~~~~~~~--~~~----~~~v~~~ 67 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRG-------IAREIVLEDIAKER------VEAEVLDMQHGSS--FYP----TVSIDGS 67 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-------CCSEEEEECSSHHH------HHHHHHHHHHTGG--GST----TCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-------CCCEEEEEeCChhH------HHHHHHHHHhhhh--hcC----CeEEEeC
Confidence 589999999999999999999999 7 99999998644 22 232 22221 111 1234455
Q ss_pred CCHHHHhcCCCEEEEccCcchH----------------HHHHHHHhccCCCCcEEEEeecCccc
Q 014757 136 PDLENAVKDANMLVFVTPHQFM----------------EGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~----------------~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++.+ ++.++|+||+++|.... +++++.+.++ .++++|++++||++.
T Consensus 68 ~~~~-~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~ 129 (319)
T 1lld_A 68 DDPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI 129 (319)
T ss_dssp SCGG-GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred CCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence 5654 57899999999975433 3777788775 688999999999875
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-08 Score=109.45 Aligned_cols=179 Identities=9% Similarity=0.006 Sum_probs=115.6
Q ss_pred CCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCC-c-chHHHHHHhcCcCCccCCCCccCCCeE
Q 014757 56 DGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPS-G-EKLTDVINRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~-~-~~l~~~i~~~g~~~~~~~~~~l~~~i~ 133 (419)
.....+.||+|||+|.||+.+|..++.+| ++|+++|++++..+ + +.+...+..................+.
T Consensus 311 ~~~~~i~~v~ViGaG~MG~gIA~~~a~aG-------~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 383 (742)
T 3zwc_A 311 ASAQPVSSVGVLGLGTMGRGIAISFARVG-------ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLR 383 (742)
T ss_dssp CCCCCCCEEEEECCSHHHHHHHHHHHTTT-------CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEE
T ss_pred cCcccccEEEEEcccHHHHHHHHHHHhCC-------CchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhc
Confidence 34556789999999999999999999999 99999999875411 0 011111111000000001111223567
Q ss_pred ecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceE--EEe
Q 014757 134 ADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCC--VLM 207 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~--v~~ 207 (419)
.+++.++ +.+||+||-+|+. ....+++.+|.+.+++++|+.|.|++++++ .+.+.... ++. -..
T Consensus 384 ~~~~~~~-l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~---------~ia~~~~~p~r~ig~HFf 453 (742)
T 3zwc_A 384 FSSSTKE-LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD---------DIASSTDRPQLVIGTHFF 453 (742)
T ss_dssp EESCGGG-GGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH---------HHHTTSSCGGGEEEEECC
T ss_pred ccCcHHH-HhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChH---------HHHhhcCCcccccccccc
Confidence 7778765 7899999999998 567788899999999999999999888752 23332222 222 223
Q ss_pred CcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCcHHH
Q 014757 208 GANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQDVEG 256 (419)
Q Consensus 208 gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~di~~ 256 (419)
.|... -....++.+...+++.++++.++.+..|.......|..+
T Consensus 454 nP~~~-----m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~pG 497 (742)
T 3zwc_A 454 SPAHV-----MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYG 497 (742)
T ss_dssp SSTTT-----CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEECCCSTT
T ss_pred CCCCC-----CceEEEecCCCCCHHHHHHHHHHHHHhCCCCcccCCCCC
Confidence 34321 112233444445788889999988888877777777543
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-09 Score=103.41 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=74.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-C-cCCccCCCCccCCCeEe-cCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-N-ENVKYLPGIKLGKNVVA-DPD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g-~~~~~~~~~~l~~~i~~-~~~ 137 (419)
||||+|||+|.||+++|..|+++|. .++|++|+|++++ ++.+... + .. .+ .+..++. +++
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~g~-----~~~V~l~d~~~~~------~~~~~~~l~~~~-~~-----~~~~~~~~~~d 63 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQGV-----ADDYVFIDANEAK------VKADQIDFQDAM-AN-----LEAHGNIVIND 63 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTC-----CSEEEEECSSHHH------HHHHHHHHHHHG-GG-----SSSCCEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-----CCEEEEEcCCHHH------HHHHHHHHHhhh-hh-----cCCCeEEEeCC
Confidence 5899999999999999999999982 1589999998754 3333221 0 00 00 0112233 467
Q ss_pred HHHHhcCCCEEEEccCcch--------------------HHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 138 LENAVKDANMLVFVTPHQF--------------------MEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~--------------------~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+ +++.++|+||+++|... ++++++.+.++. ++++++..+|+++.
T Consensus 64 ~-~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 64 W-AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDV 127 (309)
T ss_dssp G-GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred H-HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHH
Confidence 7 56889999999999855 477788887764 57788889998764
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.83 E-value=8.8e-09 Score=100.15 Aligned_cols=106 Identities=13% Similarity=0.299 Sum_probs=74.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.+|||+|||+|.||+++|..|+++| + +|++||++++.. +.....+.... . . ...+.++..+++.
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~g-------~~~V~l~D~~~~~~--~~~~~~l~~~~--~-~---~~~~~~i~~t~d~ 67 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKDN-------LADVVLFDIAEGIP--QGKALDITHSM--V-M---FGSTSKVIGTDDY 67 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHT-------CCEEEEECSSSSHH--HHHHHHHHHHH--H-H---HTCCCCEEEESCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CceEEEEeCCchHH--HHHHHHHHhhh--h-h---cCCCcEEEECCCH
Confidence 3579999999999999999999999 6 999999987651 11110111100 0 0 0012346666787
Q ss_pred HHHhcCCCEEEEcc--------------Cc--chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVT--------------PH--QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilav--------------p~--~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++.+||+||+++ +. ..++++++++.++. ++++++..+|+.+
T Consensus 68 -~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~ 125 (317)
T 2ewd_A 68 -ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLD 125 (317)
T ss_dssp -GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHH
T ss_pred -HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHH
Confidence 5689999999999 32 34678888888875 5899999998654
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=99.05 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=75.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
+|||+|||+|.||+++|..|+.+| + +|.+||++++++ +.....+... . .++ ..+.+++.++|++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g-------~~~V~L~D~~~~~~--~~~~~~l~~~--~-~~~---~~~~~i~~t~d~~ 73 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRE-------LADVVLYDVVKGMP--EGKALDLSHV--T-SVV---DTNVSVRAEYSYE 73 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT-------CCEEEEECSSSSHH--HHHHHHHHHH--H-HHT---TCCCCEEEECSHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-------CCeEEEEECChhHH--HHHHHHHHhh--h-hcc---CCCCEEEEeCCHH
Confidence 479999999999999999999999 6 999999998651 1111111110 0 011 1234577888998
Q ss_pred HHhcCCCEEEEcc--Ccc-------------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVT--PHQ-------------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilav--p~~-------------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++.+||+||+++ |.. .++++.+.+.++. ++.+++..+|..+
T Consensus 74 ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~ 136 (331)
T 1pzg_A 74 AALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLD 136 (331)
T ss_dssp HHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH
T ss_pred HHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchH
Confidence 7899999999998 531 1667777787765 7888888888544
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-08 Score=97.70 Aligned_cols=106 Identities=13% Similarity=0.309 Sum_probs=73.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.+|||+|||+|.||+++|..|+.+| + +|.+||+++++++ .....+... .. . ...+.++..++|.
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g-------~~~V~L~Di~~~~l~--~~~~~l~~~--~~-~---~~~~~~i~~t~d~ 77 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKD-------LGDVYMFDIIEGVPQ--GKALDLNHC--MA-L---IGSPAKIFGENNY 77 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-------CCEEEEECSSTTHHH--HHHHHHHHH--HH-H---HTCCCCEEEESCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CCeEEEEECCHHHHH--HHHHHHHhH--hh-c---cCCCCEEEECCCH
Confidence 3479999999999999999999999 6 8999999986511 111111110 00 0 0013357777888
Q ss_pred HHHhcCCCEEEEcc--Cc--------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVT--PH--------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilav--p~--------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++.+||+||+++ |. ..+.++++++.++. ++.+++..+|.++
T Consensus 78 -~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~ 135 (328)
T 2hjr_A 78 -EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLD 135 (328)
T ss_dssp -GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH
T ss_pred -HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchH
Confidence 5789999999998 32 12666777777765 7788877888543
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-08 Score=99.48 Aligned_cols=96 Identities=15% Similarity=0.223 Sum_probs=73.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...|+|+|||+|.||..+|..|...| ++|++|+|+++. .+...+.+ +... ++
T Consensus 153 l~g~~vgIIG~G~iG~~iA~~l~~~G-------~~V~~~d~~~~~------~~~~~~~g--------------~~~~-~l 204 (330)
T 2gcg_A 153 LTQSTVGIIGLGRIGQAIARRLKPFG-------VQRFLYTGRQPR------PEEAAEFQ--------------AEFV-ST 204 (330)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHGGGT-------CCEEEEESSSCC------HHHHHTTT--------------CEEC-CH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEECCCCcc------hhHHHhcC--------------ceeC-CH
Confidence 34579999999999999999999999 899999998765 34443322 2333 77
Q ss_pred HHHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~ 182 (419)
++++.++|+|++++|.. .++.++ +++.+.+++++++|+++.|-.
T Consensus 205 ~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~ 250 (330)
T 2gcg_A 205 PELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDV 250 (330)
T ss_dssp HHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGG
T ss_pred HHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcc
Confidence 77888999999999974 445554 455567888999999988744
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-08 Score=98.15 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=71.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc--eEEEEecCCCCCCcchHHHHHHh---cCcCCccCCCCccCCCeEecC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD--EVRMWVFEETLPSGEKLTDVINR---TNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~~~~~~~~~l~~~i~~---~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|||+|||+|.||+++|..|+++| + +|++|++++++ ++.+.. .+.. +.. +..+.. +
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g-------~~~~V~l~D~~~~~------~~~~~~~l~~~~~--~~~----~~~i~~-~ 60 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKG-------FAREMVLIDVDKKR------AEGDALDLIHGTP--FTR----RANIYA-G 60 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-------CCSEEEEECSSHHH------HHHHHHHHHHHGG--GSC----CCEEEE-C
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-------CCCeEEEEeCChHH------HHHHHHHHHhhhh--hcC----CcEEEe-C
Confidence 69999999999999999999999 7 99999998654 233221 1110 110 123444 3
Q ss_pred CHHHHhcCCCEEEEccCcch----------------HHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 137 DLENAVKDANMLVFVTPHQF----------------MEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~----------------~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+. +++.++|+||+++|... ++++++.+.++ .++++++..+|+++.
T Consensus 61 d~-~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~~tNp~~~ 121 (319)
T 1a5z_A 61 DY-ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVDV 121 (319)
T ss_dssp CG-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHH
T ss_pred CH-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcHHH
Confidence 54 45789999999999733 46777778776 468888889997754
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-08 Score=98.85 Aligned_cols=96 Identities=14% Similarity=0.201 Sum_probs=74.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...|+|+|||+|.||..+|..|+..| ++|.+|+|+++. +...+.| +.. .++
T Consensus 148 l~g~~vgIIG~G~iG~~iA~~l~~~G-------~~V~~~d~~~~~-------~~~~~~g--------------~~~-~~l 198 (334)
T 2dbq_A 148 VYGKTIGIIGLGRIGQAIAKRAKGFN-------MRILYYSRTRKE-------EVERELN--------------AEF-KPL 198 (334)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCH-------HHHHHHC--------------CEE-CCH
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhCC-------CEEEEECCCcch-------hhHhhcC--------------ccc-CCH
Confidence 34579999999999999999999999 899999998753 2222222 223 467
Q ss_pred HHHhcCCCEEEEccCcch-HHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPHQF-MEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~-~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++.++|+|++++|... ++.++ +++.+.+++++++|++++|...
T Consensus 199 ~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v 245 (334)
T 2dbq_A 199 EDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVV 245 (334)
T ss_dssp HHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGB
T ss_pred HHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCccc
Confidence 778889999999999854 55555 4566778899999999988654
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-08 Score=98.17 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=73.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|+|||+|.||..+|..|...| ++|.+|+|+++. .+ + +....++
T Consensus 162 l~g~~vgIIG~G~iG~~vA~~l~~~G-------~~V~~~dr~~~~------~~-----g--------------~~~~~~l 209 (333)
T 3ba1_A 162 FSGKRVGIIGLGRIGLAVAERAEAFD-------CPISYFSRSKKP------NT-----N--------------YTYYGSV 209 (333)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTT-------CCEEEECSSCCT------TC-----C--------------SEEESCH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEECCCchh------cc-----C--------------ceecCCH
Confidence 34468999999999999999999999 899999998754 11 1 1234678
Q ss_pred HHHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++.++|+|++++|.. .++.++ ++..+.+++++++|+++.|...
T Consensus 210 ~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~v 256 (333)
T 3ba1_A 210 VELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHV 256 (333)
T ss_dssp HHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGB
T ss_pred HHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchh
Confidence 88889999999999974 566555 3445567889999999988765
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-08 Score=96.65 Aligned_cols=102 Identities=13% Similarity=0.222 Sum_probs=71.6
Q ss_pred CeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEEEEecCCCCCCcchHHHHHHh--cCcCCccCCCCccCCCeEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVRMWVFEETLPSGEKLTDVINR--TNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~--~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|||+|||+|.||+++|..|+++ | ++|.+||+++++ ++.+.. ......+ ..+.++..+++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g-------~~V~l~D~~~~~------~~~~~~~l~~~~~~~----~~~~~i~~t~d 63 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLA-------RELVLLDVVEGI------PQGKALDMYESGPVG----LFDTKVTGSND 63 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC-------SEEEEECSSSSH------HHHHHHHHHTTHHHH----TCCCEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC-------CEEEEEeCChhH------HHHHHHhHHhhhhcc----cCCcEEEECCC
Confidence 6999999999999999999986 5 899999999865 333321 0000000 01234667788
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++ +.++|+||+++|.. .++++.+.+.++ .++.+++..+|+++
T Consensus 64 ~~~-l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~tNP~~ 122 (310)
T 1guz_A 64 YAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNPLD 122 (310)
T ss_dssp GGG-GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSSHH
T ss_pred HHH-HCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEEcCchH
Confidence 876 89999999999752 124555666666 46788888888665
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.7e-08 Score=95.77 Aligned_cols=93 Identities=15% Similarity=0.230 Sum_probs=66.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||+|.||..+|..|...| .+|.+|+|+++. . . ......++
T Consensus 169 l~gktiGIIGlG~IG~~vA~~l~~~G-------~~V~~~dr~~~~------~-----~--------------~~~~~~sl 216 (340)
T 4dgs_A 169 PKGKRIGVLGLGQIGRALASRAEAFG-------MSVRYWNRSTLS------G-----V--------------DWIAHQSP 216 (340)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTT-------CEEEEECSSCCT------T-----S--------------CCEECSSH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEcCCccc------c-----c--------------CceecCCH
Confidence 33479999999999999999999999 899999998653 0 0 12345678
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++++||+|++++|. ..++.++ ++..+.+++++++|++..|-..
T Consensus 217 ~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vv 263 (340)
T 4dgs_A 217 VDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVV 263 (340)
T ss_dssp HHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC---
T ss_pred HHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCccc
Confidence 8889999999999995 5666666 5566778899999999887554
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-08 Score=95.04 Aligned_cols=93 Identities=14% Similarity=0.243 Sum_probs=74.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||+|.||..+|..|...| ++|.+|+|+++. .+. +...+++
T Consensus 120 l~g~tvGIIGlG~IG~~vA~~l~~~G-------~~V~~~dr~~~~------~~~-------------------~~~~~~l 167 (290)
T 3gvx_A 120 LYGKALGILGYGGIGRRVAHLAKAFG-------MRVIAYTRSSVD------QNV-------------------DVISESP 167 (290)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHT-------CEEEEECSSCCC------TTC-------------------SEECSSH
T ss_pred eecchheeeccCchhHHHHHHHHhhC-------cEEEEEeccccc------ccc-------------------ccccCCh
Confidence 33479999999999999999999999 899999998754 110 1345678
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++++++|+|++++|. ..++.++ ++..+.+++++++|+++.|-..
T Consensus 168 ~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~v 214 (290)
T 3gvx_A 168 ADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVV 214 (290)
T ss_dssp HHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGB
T ss_pred HHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhccc
Confidence 8888999999999995 5555554 4566778999999999877654
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.68 E-value=3.6e-08 Score=97.10 Aligned_cols=97 Identities=7% Similarity=0.070 Sum_probs=73.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-++|+|||+|.||..+|..|. ..| ++|.+|+|+++. .+...+.| +...++
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~G-------~~V~~~d~~~~~------~~~~~~~g--------------~~~~~~ 213 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGLG-------MKLVYYDVAPAD------AETEKALG--------------AERVDS 213 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-------CEEEEECSSCCC------HHHHHHHT--------------CEECSS
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhcC-------CEEEEECCCCcc------hhhHhhcC--------------cEEeCC
Confidence 33468999999999999999999 888 899999998765 33333322 234457
Q ss_pred HHHHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++++.++|+|++++|.. .++.++ +++.+.+++++++|+++.|-.
T Consensus 214 l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~ 260 (348)
T 2w2k_A 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPV 260 (348)
T ss_dssp HHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGG
T ss_pred HHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCch
Confidence 778888999999999974 455555 345567888999999887743
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=96.16 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=76.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||+|.||..+|..|...| .+|.+|+|++.. .+...+.| +....++
T Consensus 162 l~gktvGIIG~G~IG~~vA~~l~~~G-------~~V~~~dr~~~~------~~~~~~~g--------------~~~~~~l 214 (351)
T 3jtm_A 162 LEGKTIGTVGAGRIGKLLLQRLKPFG-------CNLLYHDRLQMA------PELEKETG--------------AKFVEDL 214 (351)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGC-------CEEEEECSSCCC------HHHHHHHC--------------CEECSCH
T ss_pred ccCCEEeEEEeCHHHHHHHHHHHHCC-------CEEEEeCCCccC------HHHHHhCC--------------CeEcCCH
Confidence 44579999999999999999999999 899999998755 34444333 2345678
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++..+|+|++++|. ..++.++ ++....+++++++|.+..|-...
T Consensus 215 ~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 262 (351)
T 3jtm_A 215 NEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIME 262 (351)
T ss_dssp HHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhC
Confidence 8889999999999995 4555444 44556688999999998876543
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-08 Score=104.27 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=75.4
Q ss_pred cCeEEEECcchH-HHHHHHHHHHc--CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGSGNW-GSVASKLIASN--TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGaG~m-G~~lA~~La~~--G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+|||+|||+|.+ |.++|..|+++ +.. .++|.+||+++++ ++.+.... ..+++....+.++++++|
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~----~~eV~L~Di~~e~------~~~~~~~~--~~~l~~~~~~~~I~~t~D 95 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFP----IRKLKLYDNDKER------QDRIAGAC--DVFIREKAPDIEFAATTD 95 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSC----EEEEEEECSCHHH------HHHHHHHH--HHHHHHHCTTSEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCC----CCEEEEEeCCHHH------HHHHHHHH--HHHhccCCCCCEEEEECC
Confidence 469999999999 66688888887 210 1799999998765 33332211 011122334557888889
Q ss_pred HHHHhcCCCEEEEccCcch------------------------------------HHHHHHHHhccCCCCcEEEEeecCc
Q 014757 138 LENAVKDANMLVFVTPHQF------------------------------------MEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~------------------------------------~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
.++++.+||+||++++... +.++++++.++ .|+.+++..+|.+
T Consensus 96 ~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~-~P~A~ii~~TNPv 174 (472)
T 1u8x_X 96 PEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYSNPA 174 (472)
T ss_dssp HHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSCH
T ss_pred HHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCCcH
Confidence 8778999999999998732 34555556554 5789999999866
Q ss_pred c
Q 014757 182 E 182 (419)
Q Consensus 182 ~ 182 (419)
+
T Consensus 175 d 175 (472)
T 1u8x_X 175 A 175 (472)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-08 Score=102.29 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=56.9
Q ss_pred CcCeEEEECcchH--HHHHHHHHHHc----CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeE
Q 014757 60 HKSKVTVVGSGNW--GSVASKLIASN----TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 60 ~~mkI~IIGaG~m--G~~lA~~La~~----G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~ 133 (419)
.+|||+|||+|.| |.+++..|++. | ++|.+||+++++ ++.+.... ..+.+....+.+++
T Consensus 2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~-------~eV~L~Di~~e~------l~~~~~~~--~~~l~~~~~~~~I~ 66 (480)
T 1obb_A 2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSG-------STVTLMDIDEER------LDAILTIA--KKYVEEVGADLKFE 66 (480)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTT-------CEEEEECSCHHH------HHHHHHHH--HHHHHHTTCCCEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCcCCC-------CEEEEEeCCHHH------HHHHHHHH--HHHhccCCCCcEEE
Confidence 4689999999996 67778888754 6 899999998765 33332211 01111222355788
Q ss_pred ecCCHHHHhcCCCEEEEccCc
Q 014757 134 ADPDLENAVKDANMLVFVTPH 154 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~ 154 (419)
+++|.++++++||+||++++.
T Consensus 67 ~ttD~~eal~dAD~VIiaagv 87 (480)
T 1obb_A 67 KTMNLDDVIIDADFVINTAMV 87 (480)
T ss_dssp EESCHHHHHTTCSEEEECCCT
T ss_pred EECCHHHHhCCCCEEEECCCc
Confidence 889987789999999999975
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=92.37 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=73.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.+|||+|||+|.||+++|..|+.+| + +|.++|++++++ +.....+... .. . ...+.+++.+++.
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~g-------~~~v~L~Di~~~~l--~~~~~~l~~~-~~--~---~~~~~~i~~t~d~ 67 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKN-------LGDVVLFDIVKNMP--HGKALDTSHT-NV--M---AYSNCKVSGSNTY 67 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-------CCEEEEECSSSSHH--HHHHHHHHTH-HH--H---HTCCCCEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CCeEEEEeCCHHHH--HHHHHHHHhh-hh--h---cCCCcEEEECCCH
Confidence 4679999999999999999999999 5 899999987651 1111122210 00 0 0012346777888
Q ss_pred HHHhcCCCEEEEcc--Ccc-------------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVT--PHQ-------------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilav--p~~-------------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++++||+||+++ |.. .++++.+++.++. ++.+++..+|..+
T Consensus 68 -~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~ 130 (322)
T 1t2d_A 68 -DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVD 130 (322)
T ss_dssp -GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHH
T ss_pred -HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChH
Confidence 5689999999998 421 3666677777765 7888877888543
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.8e-08 Score=94.45 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc--eEEEEecCCCCCCcchHHHHHH-h-cCcCCccCCCCccCCCeEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD--EVRMWVFEETLPSGEKLTDVIN-R-TNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~~~~~~~~~l~~~i~-~-~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|||+|||+|.||+++|..|+.+| + +|.+||+++++ .+... . ..... +. .+..+.. ++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g-------~~~eV~L~D~~~~~------~~~~~~~l~~~~~-~~----~~~~i~~-~~ 61 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRG-------SCSELVLVDRDEDR------AQAEAEDIAHAAP-VS----HGTRVWH-GG 61 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CCSEEEEECSSHHH------HHHHHHHHTTSCC-TT----SCCEEEE-EC
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-------CCCEEEEEeCCHHH------HHHHHHhhhhhhh-hc----CCeEEEE-CC
Confidence 69999999999999999999999 6 99999998653 22111 1 11110 11 1122333 45
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
. +++.+||+||++++.. .++++++.+.++ .++++++..+|+++
T Consensus 62 ~-~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~ 120 (304)
T 2v6b_A 62 H-SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVD 120 (304)
T ss_dssp G-GGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHH
T ss_pred H-HHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchH
Confidence 4 4689999999999643 236677778776 57888888898765
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-08 Score=96.95 Aligned_cols=96 Identities=17% Similarity=0.284 Sum_probs=73.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|+|||+|.||..+|..|...| ++|.+|+|+++. +...+.| +.. .++
T Consensus 144 l~g~~vgIIG~G~iG~~vA~~l~~~G-------~~V~~~d~~~~~-------~~~~~~g--------------~~~-~~l 194 (333)
T 2d0i_A 144 LYGKKVGILGMGAIGKAIARRLIPFG-------VKLYYWSRHRKV-------NVEKELK--------------ARY-MDI 194 (333)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGT-------CEEEEECSSCCH-------HHHHHHT--------------EEE-CCH
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHCC-------CEEEEECCCcch-------hhhhhcC--------------cee-cCH
Confidence 44578999999999999999999999 899999998753 2222222 233 367
Q ss_pred HHHhcCCCEEEEccCcc-hHHHHHH-HHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPHQ-FMEGICK-RLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~-~~~~vl~-~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++.++|+|++++|.. .++.++. ++.+.++++ ++|++++|-...
T Consensus 195 ~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd 241 (333)
T 2d0i_A 195 DELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVD 241 (333)
T ss_dssp HHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBC
T ss_pred HHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccC
Confidence 77788999999999986 6666653 455667889 999998876553
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=79.75 Aligned_cols=96 Identities=14% Similarity=0.208 Sum_probs=64.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEe-cCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVA-DPD 137 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~-~~~ 137 (419)
..|+|+|+|+|.+|..++..|.+.| ++|++++++++. .+.+.+. +... +.. .++
T Consensus 3 ~~m~i~IiG~G~iG~~~a~~L~~~g-------~~v~~~d~~~~~------~~~~~~~~~~~~-----------~~~d~~~ 58 (140)
T 1lss_A 3 HGMYIIIAGIGRVGYTLAKSLSEKG-------HDIVLIDIDKDI------CKKASAEIDALV-----------INGDCTK 58 (140)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCHHH------HHHHHHHCSSEE-----------EESCTTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCHHH------HHHHHHhcCcEE-----------EEcCCCC
Confidence 3479999999999999999999999 899999998654 4555532 2110 000 112
Q ss_pred HH---H-HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 138 LE---N-AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 138 ~~---e-a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
.+ + .+.++|+||+++|+......+..+.+.++++++++ .+++
T Consensus 59 ~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~-~~~~ 104 (140)
T 1lss_A 59 IKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIA-RISE 104 (140)
T ss_dssp HHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEE-ECSS
T ss_pred HHHHHHcCcccCCEEEEeeCCchHHHHHHHHHHHcCCCEEEE-EecC
Confidence 21 1 15689999999998766555555666666666554 4443
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=6e-08 Score=94.42 Aligned_cols=96 Identities=9% Similarity=0.105 Sum_probs=73.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEec-CCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVF-EETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r-~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-++|+|||+|.||..+|..|...| ++|.+|+| +++. +...+.| +...++
T Consensus 144 l~g~~vgIIG~G~IG~~~A~~l~~~G-------~~V~~~d~~~~~~-------~~~~~~g--------------~~~~~~ 195 (320)
T 1gdh_A 144 LDNKTLGIYGFGSIGQALAKRAQGFD-------MDIDYFDTHRASS-------SDEASYQ--------------ATFHDS 195 (320)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTT-------CEEEEECSSCCCH-------HHHHHHT--------------CEECSS
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEECCCCcCh-------hhhhhcC--------------cEEcCC
Confidence 34468999999999999999999988 89999999 7653 2222222 234447
Q ss_pred HHHHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++++.++|+|++++|.. .++.++ +...+.+++++++|++..|-.
T Consensus 196 l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~ 242 (320)
T 1gdh_A 196 LDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDL 242 (320)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGG
T ss_pred HHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcc
Confidence 888888999999999963 455555 446677889999999987643
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.61 E-value=9.6e-08 Score=95.25 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=75.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||+|.||..+|+.|...| .+|.+|+|++.. .+...+.| +....++
T Consensus 189 l~gktvGIIGlG~IG~~vA~~l~a~G-------~~V~~~d~~~~~------~~~~~~~G--------------~~~~~~l 241 (393)
T 2nac_A 189 LEAMHVGTVAAGRIGLAVLRRLAPFD-------VHLHYTDRHRLP------ESVEKELN--------------LTWHATR 241 (393)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHGGGT-------CEEEEECSSCCC------HHHHHHHT--------------CEECSSH
T ss_pred CCCCEEEEEeECHHHHHHHHHHHhCC-------CEEEEEcCCccc------hhhHhhcC--------------ceecCCH
Confidence 34479999999999999999999989 899999998755 23333323 2334578
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++..+|+|++++|. ..++.++ ++..+.+++++++|++..|-..
T Consensus 242 ~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v 288 (393)
T 2nac_A 242 EDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLC 288 (393)
T ss_dssp HHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGB
T ss_pred HHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHh
Confidence 8888999999999996 3555555 4566778899999999877544
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-08 Score=96.80 Aligned_cols=96 Identities=17% Similarity=0.306 Sum_probs=73.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|..|...| ++|.+|+|+++. .+.+.. .....+++
T Consensus 138 ~g~tvGIiG~G~IG~~vA~~l~~~G-------~~V~~~dr~~~~------~~~~~~----------------~~~~~~l~ 188 (315)
T 3pp8_A 138 EEFSVGIMGAGVLGAKVAESLQAWG-------FPLRCWSRSRKS------WPGVES----------------YVGREELR 188 (315)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTT-------CCEEEEESSCCC------CTTCEE----------------EESHHHHH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCC-------CEEEEEcCCchh------hhhhhh----------------hcccCCHH
Confidence 3478999999999999999999999 899999998754 111110 01124677
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++.++|+|++++|. ..++.++ ++....+++++++|.+..|-...
T Consensus 189 ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 235 (315)
T 3pp8_A 189 AFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQ 235 (315)
T ss_dssp HHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBC
T ss_pred HHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhh
Confidence 888999999999995 5666665 55667789999999998876553
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=7.6e-08 Score=94.64 Aligned_cols=97 Identities=8% Similarity=0.025 Sum_probs=73.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||+|.||..+|..|...| .+|.+|+|+++. ... ...| +....++
T Consensus 166 l~g~tvGIIG~G~IG~~vA~~l~~~G-------~~V~~~d~~~~~------~~~-~~~g--------------~~~~~~l 217 (347)
T 1mx3_A 166 IRGETLGIIGLGRVGQAVALRAKAFG-------FNVLFYDPYLSD------GVE-RALG--------------LQRVSTL 217 (347)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTT-------CEEEEECTTSCT------THH-HHHT--------------CEECSSH
T ss_pred CCCCEEEEEeECHHHHHHHHHHHHCC-------CEEEEECCCcch------hhH-hhcC--------------CeecCCH
Confidence 34578999999999999999999999 899999987653 111 2222 2334578
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++..+|+|++++|. ..++.++ ++..+.+++++++|++..|-..
T Consensus 218 ~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~v 264 (347)
T 1mx3_A 218 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV 264 (347)
T ss_dssp HHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSB
T ss_pred HHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHH
Confidence 8888899999999997 3555555 4556778899999999877544
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=93.84 Aligned_cols=98 Identities=13% Similarity=0.248 Sum_probs=75.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-++|+|||+|.||..+|..|...| .+ |.+|+|++.. .+...+.| +....+
T Consensus 162 l~g~tvgIIG~G~IG~~vA~~l~~~G-------~~~V~~~d~~~~~------~~~~~~~g--------------~~~~~~ 214 (364)
T 2j6i_A 162 IEGKTIATIGAGRIGYRVLERLVPFN-------PKELLYYDYQALP------KDAEEKVG--------------ARRVEN 214 (364)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGC-------CSEEEEECSSCCC------HHHHHHTT--------------EEECSS
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC-------CcEEEEECCCccc------hhHHHhcC--------------cEecCC
Confidence 34578999999999999999999888 86 9999998765 34333333 334457
Q ss_pred HHHHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 138 LENAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++++..+|+|++++|.. .++.++ +...+.+++++++|++..|-..
T Consensus 215 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~v 262 (364)
T 2j6i_A 215 IEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAIC 262 (364)
T ss_dssp HHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGB
T ss_pred HHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchh
Confidence 888889999999999974 555555 4456778899999999887543
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.7e-08 Score=95.20 Aligned_cols=107 Identities=9% Similarity=0.096 Sum_probs=78.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|..|...| .+|.+|+|++. .+...+.| +...++++
T Consensus 159 ~g~tvGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~-------~~~~~~~g--------------~~~~~~l~ 210 (352)
T 3gg9_A 159 KGQTLGIFGYGKIGQLVAGYGRAFG-------MNVLVWGRENS-------KERARADG--------------FAVAESKD 210 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSHHH-------HHHHHHTT--------------CEECSSHH
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCC-------CEEEEECCCCC-------HHHHHhcC--------------ceEeCCHH
Confidence 3469999999999999999999999 89999998742 12223322 34456888
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHh
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISE 197 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~ 197 (419)
+++.++|+|++++|. ..++.++ ++..+.+++++++|.+..|-... ...+.+.+++
T Consensus 211 ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd---~~aL~~aL~~ 267 (352)
T 3gg9_A 211 ALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVE---ENGMVTALNR 267 (352)
T ss_dssp HHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBC---TTHHHHHHHH
T ss_pred HHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhc---HHHHHHHHHh
Confidence 889999999999995 4455444 35567789999999998776553 2334444443
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.56 E-value=8.2e-08 Score=93.17 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=71.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|+|||+|.||..+|..|...| ++|.+|+|+++. . ...+.| +.. .++
T Consensus 140 l~g~~vgIIG~G~IG~~~A~~l~~~G-------~~V~~~d~~~~~------~-~~~~~g--------------~~~-~~l 190 (313)
T 2ekl_A 140 LAGKTIGIVGFGRIGTKVGIIANAMG-------MKVLAYDILDIR------E-KAEKIN--------------AKA-VSL 190 (313)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTT-------CEEEEECSSCCH------H-HHHHTT--------------CEE-CCH
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHCC-------CEEEEECCCcch------h-HHHhcC--------------cee-cCH
Confidence 34478999999999999999999999 899999998754 2 222322 222 367
Q ss_pred HHHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++..+|+|++++|.. .++.++ +...+.+++++++|++..|-..
T Consensus 191 ~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~v 237 (313)
T 2ekl_A 191 EELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAV 237 (313)
T ss_dssp HHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGB
T ss_pred HHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCccc
Confidence 78888999999999963 344444 3445667889999999876443
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.5e-08 Score=101.03 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=75.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|+|||+|.||..+|..|...| ++|.+|++++.. +...+.| +... ++
T Consensus 140 l~g~~vgIIG~G~IG~~vA~~l~~~G-------~~V~~~d~~~~~-------~~a~~~g--------------~~~~-~l 190 (529)
T 1ygy_A 140 IFGKTVGVVGLGRIGQLVAQRIAAFG-------AYVVAYDPYVSP-------ARAAQLG--------------IELL-SL 190 (529)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTT-------CEEEEECTTSCH-------HHHHHHT--------------CEEC-CH
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCC-------CEEEEECCCCCh-------hHHHhcC--------------cEEc-CH
Confidence 34479999999999999999999999 899999987642 2223323 2233 67
Q ss_pred HHHhcCCCEEEEccCcc-hHHHHHHH-HhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPHQ-FMEGICKR-LVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~-~~~~vl~~-l~~~l~~~tiivs~~nGi~~ 183 (419)
++++.+||+|++|+|.. .++.++.. +.+.++++++++++.+|-..
T Consensus 191 ~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv 237 (529)
T 1ygy_A 191 DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV 237 (529)
T ss_dssp HHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSB
T ss_pred HHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchh
Confidence 78888999999999986 77777754 67788999999999887554
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.7e-07 Score=91.95 Aligned_cols=95 Identities=9% Similarity=0.203 Sum_probs=73.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++|+|||+|.||..+|..|...| .+|..|+|++.. .+. .. + +....++++
T Consensus 173 gktvGIIGlG~IG~~vA~~l~~~G-------~~V~~~dr~~~~------~~~-~~-g--------------~~~~~~l~e 223 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRARGFG-------LAIHYHNRTRLS------HAL-EE-G--------------AIYHDTLDS 223 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHHTTT-------CEEEEECSSCCC------HHH-HT-T--------------CEECSSHHH
T ss_pred CCEEEEEEeChhHHHHHHHHHHCC-------CEEEEECCCCcc------hhh-hc-C--------------CeEeCCHHH
Confidence 479999999999999999999888 899999998754 221 11 2 234468888
Q ss_pred HhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 141 AVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++.++|+|++++|. ...+.++ ++....+++++++|.+..|-...
T Consensus 224 ll~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vd 269 (345)
T 4g2n_A 224 LLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLIN 269 (345)
T ss_dssp HHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhC
Confidence 89999999999995 4455444 44556688999999998776553
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=90.22 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=70.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc--eEEEEecCCCCCCcchHHH--HHHhcCcCCccCCCCccCCCeEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD--EVRMWVFEETLPSGEKLTD--VINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~~~~~~~~~l~~--~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|||+|||+|.||+++|..|+.+| + +|.+||+++++ ++ .+.-.+.+. ++ ..+.++.+++|
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~-------~~~~v~L~D~~~~~------~~g~~~dl~~~~~-~~---~~~~~i~~t~d 63 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNL-------DVDEIALVDIAEDL------AVGEAMDLAHAAA-GI---DKYPKIVGGAD 63 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS-------CCSEEEEECSSHHH------HHHHHHHHHHHHH-TT---TCCCEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-------CCCeEEEEECChHH------HHHHHHHHHhhhh-hc---CCCCEEEEeCC
Confidence 79999999999999999999998 5 89999998754 22 111111110 01 12345677777
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+++++||+||++.... .++++.+.+.++ .++.+++..+|.++
T Consensus 64 -~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNPvd 122 (294)
T 1oju_A 64 -YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMD 122 (294)
T ss_dssp -GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHH
T ss_pred -HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcch
Confidence 56789999999997531 133444556665 67889998888654
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.2e-08 Score=94.35 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=72.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|..|...| .+|.+|+|+++. .+.+.. .....+++
T Consensus 136 ~gktvGIiGlG~IG~~vA~~l~~~G-------~~V~~~dr~~~~------~~~~~~----------------~~~~~~l~ 186 (324)
T 3evt_A 136 TGQQLLIYGTGQIGQSLAAKASALG-------MHVIGVNTTGHP------ADHFHE----------------TVAFTATA 186 (324)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESSCCC------CTTCSE----------------EEEGGGCH
T ss_pred cCCeEEEECcCHHHHHHHHHHHhCC-------CEEEEECCCcch------hHhHhh----------------ccccCCHH
Confidence 3468999999999999999999999 899999998754 111110 12235677
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++||+|++++|. ..++.++ ++....+++++++|.++.|-...
T Consensus 187 ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd 233 (324)
T 3evt_A 187 DALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVD 233 (324)
T ss_dssp HHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBC
T ss_pred HHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhh
Confidence 888899999999995 4555554 45566788999999998776543
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=92.28 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=73.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|..|...| .+|.+|+|++.. .+.....| +.. .+++
T Consensus 144 ~g~tvGIIG~G~IG~~vA~~l~~~G-------~~V~~~d~~~~~------~~~~~~~g--------------~~~-~~l~ 195 (330)
T 4e5n_A 144 DNATVGFLGMGAIGLAMADRLQGWG-------ATLQYHEAKALD------TQTEQRLG--------------LRQ-VACS 195 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHTTTSC-------CEEEEECSSCCC------HHHHHHHT--------------EEE-CCHH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCC-------CEEEEECCCCCc------HhHHHhcC--------------cee-CCHH
Confidence 4579999999999999999999888 899999998744 23333323 223 3688
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++..+|+|++++|. ..++.++ ++..+.+++++++|++..|-..
T Consensus 196 ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~v 241 (330)
T 4e5n_A 196 ELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVV 241 (330)
T ss_dssp HHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGB
T ss_pred HHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchh
Confidence 888899999999995 3454444 4566778999999999877554
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.8e-08 Score=93.28 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=69.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~ 136 (419)
...++|+|||+|.||..++..|.+. |. .+|++|+|++++ .+.+.+. +. ++...+
T Consensus 133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~------~~V~v~dr~~~~------~~~l~~~~~~------------~~~~~~ 188 (312)
T 2i99_A 133 PSSEVLCILGAGVQAYSHYEIFTEQFSF------KEVRIWNRTKEN------AEKFADTVQG------------EVRVCS 188 (312)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHCCC------SEEEEECSSHHH------HHHHHHHSSS------------CCEECS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHhCCC------cEEEEEcCCHHH------HHHHHHHhhC------------CeEEeC
Confidence 3457999999999999999999887 62 489999998765 4555442 10 134567
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
++++++.++|+||+|||+. +.++.. +.++++++|+++..
T Consensus 189 ~~~e~v~~aDiVi~atp~~--~~v~~~--~~l~~g~~vi~~g~ 227 (312)
T 2i99_A 189 SVQEAVAGADVIITVTLAT--EPILFG--EWVKPGAHINAVGA 227 (312)
T ss_dssp SHHHHHTTCSEEEECCCCS--SCCBCG--GGSCTTCEEEECCC
T ss_pred CHHHHHhcCCEEEEEeCCC--CcccCH--HHcCCCcEEEeCCC
Confidence 8888889999999999963 233322 56788999988743
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-07 Score=90.80 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=71.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|..|...| .+|.+|+|+++. +...+.| +.. .+++
T Consensus 141 ~g~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~d~~~~~-------~~~~~~g--------------~~~-~~l~ 191 (307)
T 1wwk_A 141 EGKTIGIIGFGRIGYQVAKIANALG-------MNILLYDPYPNE-------ERAKEVN--------------GKF-VDLE 191 (307)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCH-------HHHHHTT--------------CEE-CCHH
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC-------CEEEEECCCCCh-------hhHhhcC--------------ccc-cCHH
Confidence 3468999999999999999999999 899999998753 2222322 222 3677
Q ss_pred HHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 140 NAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++.++|+|++++|.. .++.++ ++..+.+++++++|++..|-..
T Consensus 192 ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~v 237 (307)
T 1wwk_A 192 TLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVV 237 (307)
T ss_dssp HHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGB
T ss_pred HHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCccc
Confidence 8888999999999963 355544 3455667889999999876443
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.2e-07 Score=90.85 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=72.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|+.|...| .+|.+|+|++.. +...+.| +.. .+++
T Consensus 164 ~g~tvgIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~~-------~~~~~~g--------------~~~-~~l~ 214 (335)
T 2g76_A 164 NGKTLGILGLGRIGREVATRMQSFG-------MKTIGYDPIISP-------EVSASFG--------------VQQ-LPLE 214 (335)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTT-------CEEEEECSSSCH-------HHHHHTT--------------CEE-CCHH
T ss_pred CcCEEEEEeECHHHHHHHHHHHHCC-------CEEEEECCCcch-------hhhhhcC--------------cee-CCHH
Confidence 3468999999999999999999888 899999987643 2223322 222 3677
Q ss_pred HHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 140 NAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++.++|+|++++|.. .++.++ ++..+.+++++++|.+..|-..
T Consensus 215 ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vv 260 (335)
T 2g76_A 215 EIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIV 260 (335)
T ss_dssp HHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSB
T ss_pred HHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCcccc
Confidence 8889999999999974 466655 4566778999999999876443
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.4e-08 Score=94.70 Aligned_cols=96 Identities=13% Similarity=0.111 Sum_probs=72.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|..|...| .+|.+|+|++.. .+... ......+++
T Consensus 139 ~g~tvGIIGlG~IG~~vA~~l~~~G-------~~V~~~dr~~~~------~~~~~----------------~~~~~~~l~ 189 (324)
T 3hg7_A 139 KGRTLLILGTGSIGQHIAHTGKHFG-------MKVLGVSRSGRE------RAGFD----------------QVYQLPALN 189 (324)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCC------CTTCS----------------EEECGGGHH
T ss_pred ccceEEEEEECHHHHHHHHHHHhCC-------CEEEEEcCChHH------hhhhh----------------cccccCCHH
Confidence 3479999999999999999999999 899999998743 11110 012245788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++.++|+|++++|. ..++.++ .+....+++++++|.+..|-...
T Consensus 190 ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vd 236 (324)
T 3hg7_A 190 KMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236 (324)
T ss_dssp HHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBC
T ss_pred HHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhC
Confidence 889999999999995 4555544 34456678999999998876553
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-07 Score=89.95 Aligned_cols=108 Identities=15% Similarity=0.234 Sum_probs=72.4
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
.|.+|||+|||+|.||+++|..|+.+| + +|.+||++++++ +..+..+..... +. ..+..+..++
T Consensus 4 ~m~~~kI~viGaG~vG~~~a~~l~~~~-------~~~v~L~Di~~~~~--~g~~~dl~~~~~---~~---~~~~~v~~t~ 68 (324)
T 3gvi_A 4 SMARNKIALIGSGMIGGTLAHLAGLKE-------LGDVVLFDIAEGTP--QGKGLDIAESSP---VD---GFDAKFTGAN 68 (324)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHTT-------CCEEEEECSSSSHH--HHHHHHHHHHHH---HH---TCCCCEEEES
T ss_pred CCcCCEEEEECCCHHHHHHHHHHHhCC-------CCeEEEEeCCchhH--HHHHHHHhchhh---hc---CCCCEEEEeC
Confidence 466789999999999999999999999 6 999999988751 111112222100 00 0123466677
Q ss_pred CHHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+. +++.+||+||++.... .++++.+.+..+ .++.+++..+|.++
T Consensus 69 d~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvtNPvd 128 (324)
T 3gvi_A 69 DY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICITNPLD 128 (324)
T ss_dssp SG-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred CH-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEecCCCcH
Confidence 77 5689999999997521 234445556555 47889998888654
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.3e-07 Score=90.51 Aligned_cols=96 Identities=14% Similarity=0.209 Sum_probs=72.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|..+...| .+|..|+|+... +.....| +. ..+++
T Consensus 175 ~gktvGIIGlG~IG~~vA~~l~~fG-------~~V~~~d~~~~~-------~~~~~~g--------------~~-~~~l~ 225 (365)
T 4hy3_A 175 AGSEIGIVGFGDLGKALRRVLSGFR-------ARIRVFDPWLPR-------SMLEENG--------------VE-PASLE 225 (365)
T ss_dssp SSSEEEEECCSHHHHHHHHHHTTSC-------CEEEEECSSSCH-------HHHHHTT--------------CE-ECCHH
T ss_pred CCCEEEEecCCcccHHHHHhhhhCC-------CEEEEECCCCCH-------HHHhhcC--------------ee-eCCHH
Confidence 3469999999999999999998888 899999987532 3333333 22 24788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++..+|+|++++|. ..++.++ .+....+++++++|.+..|-...
T Consensus 226 ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vd 272 (365)
T 4hy3_A 226 DVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVD 272 (365)
T ss_dssp HHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSC
T ss_pred HHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhC
Confidence 889999999999996 4566655 45667789999999998875543
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.4e-08 Score=82.70 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=67.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+||+|||+|.||..++..|.+.| ++|++|+|++++ .+.+.+. +. .+...++.+
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g-------~~v~v~~r~~~~------~~~~a~~~~~------------~~~~~~~~~ 75 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQ-------YKVTVAGRNIDH------VRAFAEKYEY------------EYVLINDID 75 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTT-------CEEEEEESCHHH------HHHHHHHHTC------------EEEECSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEcCCHHH------HHHHHHHhCC------------ceEeecCHH
Confidence 468999999999999999999988 779999998765 3444331 21 123456777
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+++.++|+||.|+|.... ++. ...++++.+++++....
T Consensus 76 ~~~~~~Divi~at~~~~~--~~~--~~~l~~g~~vid~~~p~ 113 (144)
T 3oj0_A 76 SLIKNNDVIITATSSKTP--IVE--ERSLMPGKLFIDLGNPP 113 (144)
T ss_dssp HHHHTCSEEEECSCCSSC--SBC--GGGCCTTCEEEECCSSC
T ss_pred HHhcCCCEEEEeCCCCCc--Eee--HHHcCCCCEEEEccCCc
Confidence 788899999999998521 111 24567789999886543
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-07 Score=89.37 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=71.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|+|||+|.||..+|..|...| ++|.+|+|+++. + +. ....++
T Consensus 122 l~g~~vgIIG~G~IG~~~A~~l~~~G-------~~V~~~dr~~~~-------~-----~~--------------~~~~~l 168 (303)
T 1qp8_A 122 IQGEKVAVLGLGEIGTRVGKILAALG-------AQVRGFSRTPKE-------G-----PW--------------RFTNSL 168 (303)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTT-------CEEEEECSSCCC-------S-----SS--------------CCBSCS
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCC-------CEEEEECCCccc-------c-----Cc--------------ccCCCH
Confidence 44579999999999999999999999 899999987532 0 10 123467
Q ss_pred HHHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++..+|+|++++|.. .++.++ ++..+.+++++++|.++.|-..
T Consensus 169 ~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~v 215 (303)
T 1qp8_A 169 EEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVL 215 (303)
T ss_dssp HHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGB
T ss_pred HHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCccc
Confidence 77889999999999974 566666 3566788999999999876443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.2e-07 Score=85.58 Aligned_cols=106 Identities=11% Similarity=0.224 Sum_probs=70.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+|||+|||+|.||..++..|+..|+ .+|.++|++++++ +..+..+... ... ...+.++..+++. +
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~------~~v~L~Di~~~~~--~g~~~dl~~~-~~~-----~~~~~~i~~t~d~-~ 66 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKEL------GDIVLLDIVEGVP--QGKALDLYEA-SPI-----EGFDVRVTGTNNY-A 66 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC------SEEEEECSSSSHH--HHHHHHHHTT-HHH-----HTCCCCEEEESCG-G
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC------CeEEEEeCCccHH--HHHHHhHHHh-Hhh-----cCCCeEEEECCCH-H
Confidence 3799999999999999999999982 2899999987651 1111222210 000 0012346666787 5
Q ss_pred HhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.+||+||+++... .+.++.+.+.++. ++.+++..+|.++
T Consensus 67 a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~ 123 (309)
T 1ur5_A 67 DTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLD 123 (309)
T ss_dssp GGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHH
T ss_pred HHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchH
Confidence 689999999998431 2345556666654 7888887888554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.5e-07 Score=77.34 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=66.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH-hcCcCCccCCCCccCCCeEe-cCCH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN-RTNENVKYLPGIKLGKNVVA-DPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~-~~g~~~~~~~~~~l~~~i~~-~~~~ 138 (419)
.++|.|+|+|.||..++..|.+.| ++|++++|++++ .+.++ ..+... +.. ..+.
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g-------~~V~vid~~~~~------~~~~~~~~g~~~-----------~~~d~~~~ 74 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSG-------HSVVVVDKNEYA------FHRLNSEFSGFT-----------VVGDAAEF 74 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCGGG------GGGSCTTCCSEE-----------EESCTTSH
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCHHH------HHHHHhcCCCcE-----------EEecCCCH
Confidence 478999999999999999999999 899999998765 33333 222110 000 1122
Q ss_pred ---HHH-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ---ENA-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ---~ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++ +.++|+||+|+++......+..+.+.+.+...++..+++..
T Consensus 75 ~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~ 122 (155)
T 2g1u_A 75 ETLKECGMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPE 122 (155)
T ss_dssp HHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred HHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 222 56799999999987665555555554445666777776554
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.45 E-value=9.3e-08 Score=91.01 Aligned_cols=94 Identities=11% Similarity=0.140 Sum_probs=68.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++|+|||+|.||.+++..|.+.| .+|++|+|++++ .+.+.+.- ++...++++
T Consensus 128 ~~~~v~iiGaG~~g~aia~~L~~~g-------~~V~v~~r~~~~------~~~l~~~~-------------g~~~~~~~~ 181 (275)
T 2hk9_A 128 KEKSILVLGAGGASRAVIYALVKEG-------AKVFLWNRTKEK------AIKLAQKF-------------PLEVVNSPE 181 (275)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHHT-------CEEEEECSSHHH------HHHHTTTS-------------CEEECSCGG
T ss_pred CCCEEEEECchHHHHHHHHHHHHcC-------CEEEEEECCHHH------HHHHHHHc-------------CCeeehhHH
Confidence 4479999999999999999999999 799999998654 45544310 133445666
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHH-hccCCCCcEEEEeec
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRL-VGKVNGDVEAISLIK 179 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l-~~~l~~~tiivs~~n 179 (419)
+++.++|+||.|||......+...+ .+.++++++++++..
T Consensus 182 ~~~~~aDiVi~atp~~~~~~~~~~i~~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 182 EVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY 222 (275)
T ss_dssp GTGGGCSEEEECSSTTSSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred hhhcCCCEEEEeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence 7778999999999986432111112 245778999999875
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.5e-07 Score=85.93 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=74.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.++||+|||+|.||+.+|..|+..|.. .+|.++|++++. .++ +..+.... ..+++.++|.
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~-----~ev~L~Di~~~~-~g~--a~dl~~~~-----------~~~i~~t~d~- 72 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIA-----DRLVLLDLSEGT-KGA--TMDLEIFN-----------LPNVEISKDL- 72 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCC-----SEEEEECCC------C--HHHHHHHT-----------CTTEEEESCG-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEcCCcch-HHH--HHHHhhhc-----------CCCeEEeCCH-
Confidence 357999999999999999999999820 289999998742 111 12222110 0146677788
Q ss_pred HHhcCCCEEEEccC-------------c--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC
Q 014757 140 NAVKDANMLVFVTP-------------H--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG 200 (419)
Q Consensus 140 ea~~~aDlVilavp-------------~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g 200 (419)
+++.+||+||++.. . ..+.++++++.++. ++.+++..+|.++ .+...+.+..+
T Consensus 73 ~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~-------~~t~~~~~~~~ 140 (303)
T 2i6t_A 73 SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVE-------IMTYVTWKLST 140 (303)
T ss_dssp GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHH-------HHHHHHHHHHC
T ss_pred HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHH-------HHHHHHHHhcC
Confidence 56899999999972 1 23666777777765 7888888888543 34455555433
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-07 Score=95.33 Aligned_cols=109 Identities=11% Similarity=0.081 Sum_probs=74.9
Q ss_pred cCeEEEECcchH-HHHHHHHHHHc--CCCCCCCCceEEEEecCC--CCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 61 KSKVTVVGSGNW-GSVASKLIASN--TLRLSSFHDEVRMWVFEE--TLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~m-G~~lA~~La~~--G~~~~~~~~~V~l~~r~~--~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.|||+|||+|.+ |.+++..|+.+ +.. .++|.+||+++ ++ ++.+.... ..+.+....+.+++.+
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~----~~ev~L~Di~~~~e~------~~~~~~~~--~~~~~~~~~~~~i~~t 74 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELP----VGELWLVDIPEGKEK------LEIVGALA--KRMVEKAGVPIEIHLT 74 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCC----EEEEEEECCGGGHHH------HHHHHHHH--HHHHHHTTCCCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCC----CCEEEEEEcCCChHH------HHHHHHHH--HHHHhhcCCCcEEEEe
Confidence 479999999999 88888888874 210 17999999987 65 33322211 0111122334567788
Q ss_pred CCHHHHhcCCCEEEEccCcch------------------------------------HHHHHHHHhccCCCCcEEEEeec
Q 014757 136 PDLENAVKDANMLVFVTPHQF------------------------------------MEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~------------------------------------~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+|..+++++||+||++++... +.++++.+.++ .|+.+++..+|
T Consensus 75 ~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~-~P~a~ii~~tN 153 (450)
T 1s6y_A 75 LDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTN 153 (450)
T ss_dssp SCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSS
T ss_pred CCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 898778999999999999632 34555566554 57899999999
Q ss_pred Ccc
Q 014757 180 GME 182 (419)
Q Consensus 180 Gi~ 182 (419)
.++
T Consensus 154 Pvd 156 (450)
T 1s6y_A 154 PAG 156 (450)
T ss_dssp SHH
T ss_pred cHH
Confidence 664
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-07 Score=90.35 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|+|||+|.||..+|..|...| ++|++|+|+++. .+ . ...++
T Consensus 142 l~g~~vgIIG~G~IG~~~A~~l~~~G-------~~V~~~d~~~~~------~~---~------------------~~~~l 187 (311)
T 2cuk_A 142 LQGLTLGLVGMGRIGQAVAKRALAFG-------MRVVYHARTPKP------LP---Y------------------PFLSL 187 (311)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCS------SS---S------------------CBCCH
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCC-------CEEEEECCCCcc------cc---c------------------ccCCH
Confidence 34478999999999999999999999 899999998764 11 0 12467
Q ss_pred HHHhcCCCEEEEccCcc-hHHHHHH-HHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPHQ-FMEGICK-RLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~-~~~~vl~-~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++..+|+|++++|.. .++.++. +..+.+++++++|+++.|-..
T Consensus 188 ~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~v 234 (311)
T 2cuk_A 188 EELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALV 234 (311)
T ss_dssp HHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGB
T ss_pred HHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCcc
Confidence 77888999999999985 5566553 455678899999999876443
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.4e-07 Score=91.28 Aligned_cols=108 Identities=11% Similarity=0.108 Sum_probs=75.1
Q ss_pred CCcCeEEEECcchH--HHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVGSGNW--GSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~m--G~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|..|||+|||+|.| |..++..|+.... +..+|.+||++++. ++.++..+.. +.. .+.++++++
T Consensus 3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~----~~geV~L~Di~~e~------le~~~~~~~~---l~~--~~~~I~~Tt 67 (450)
T 3fef_A 3 LDQIKIAYIGGGSQGWARSLMSDLSIDER----MSGTVALYDLDFEA------AQKNEVIGNH---SGN--GRWRYEAVS 67 (450)
T ss_dssp CCCEEEEEETTTCSSHHHHHHHHHHHCSS----CCEEEEEECSSHHH------HHHHHHHHTT---STT--SCEEEEEES
T ss_pred CCCCEEEEECCChhHhHHHHHHHHHhccc----cCCeEEEEeCCHHH------HHHHHHHHHH---Hhc--cCCeEEEEC
Confidence 34579999999995 7899999887421 11489999998754 3433332211 222 445688899
Q ss_pred CHHHHhcCCCEEEEccCcc-------------------h-------------------HHHHHHHHhccCCCCcEEEEee
Q 014757 137 DLENAVKDANMLVFVTPHQ-------------------F-------------------MEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~-------------------~-------------------~~~vl~~l~~~l~~~tiivs~~ 178 (419)
|+++++++||+||++++.. + +.++++++.+. .++.+++..+
T Consensus 68 D~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~-~p~a~~i~~t 146 (450)
T 3fef_A 68 TLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDY-APESWVINYT 146 (450)
T ss_dssp SHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred CHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 9999999999999999631 1 44455556554 5788999999
Q ss_pred cCcc
Q 014757 179 KGME 182 (419)
Q Consensus 179 nGi~ 182 (419)
|.++
T Consensus 147 NPvd 150 (450)
T 3fef_A 147 NPMS 150 (450)
T ss_dssp SSHH
T ss_pred CchH
Confidence 8654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-06 Score=84.28 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=67.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+|||+|||+|.+|.+++..|+..+.. .+|.++|++++++ +..+..+... . .+. .++++..+..+
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~-----~ev~L~Di~~~~~--~g~~~dl~~~-~--~~~------~~~~i~~~~~~ 70 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTA-----NELVLIDVFKEKA--IGEAMDINHG-L--PFM------GQMSLYAGDYS 70 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCS-----SEEEEECCC---C--CHHHHHHTTS-C--CCT------TCEEEC--CGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC-----CEEEEEeCChHHH--HHHHHHHHHh-H--Hhc------CCeEEEECCHH
Confidence 57999999999999999999999821 3899999987652 2222333221 1 011 12233222345
Q ss_pred HhcCCCEEEEccCcch----------------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPHQF----------------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~~----------------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++++||+||++++... +.++.+.+.++ .++.+++..+|.++
T Consensus 71 a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~ 127 (318)
T 1y6j_A 71 DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVD 127 (318)
T ss_dssp GGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHH
T ss_pred HhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCcHH
Confidence 6899999999997532 45666777776 57788877888554
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.6e-07 Score=88.61 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=70.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|+.|...| .+|.+|+|+++. . ..+ .. ....+++
T Consensus 145 ~g~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~d~~~~~-------~-~~~-~~--------------~~~~~l~ 194 (333)
T 1j4a_A 145 RDQVVGVVGTGHIGQVFMQIMEGFG-------AKVITYDIFRNP-------E-LEK-KG--------------YYVDSLD 194 (333)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCH-------H-HHH-TT--------------CBCSCHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC-------CEEEEECCCcch-------h-HHh-hC--------------eecCCHH
Confidence 3478999999999999999999999 899999998753 1 222 10 1234677
Q ss_pred HHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 140 NAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++..+|+|++++|.. .++.++ +...+.+++++++|++..|-..
T Consensus 195 ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~v 240 (333)
T 1j4a_A 195 DLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLV 240 (333)
T ss_dssp HHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGB
T ss_pred HHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCccc
Confidence 8888999999999963 455544 3445667889999999876544
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=74.74 Aligned_cols=87 Identities=20% Similarity=0.156 Sum_probs=63.6
Q ss_pred CCCcCeEEEECc----chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeE
Q 014757 58 VLHKSKVTVVGS----GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 58 ~~~~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~ 133 (419)
.....+|+|||+ |.||..++..|.+.| ++|+.++++.+. + . +++
T Consensus 11 l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G-------~~V~~vnp~~~~---------i--~--------------G~~ 58 (138)
T 1y81_A 11 SKEFRKIALVGASKNPAKYGNIILKDLLSKG-------FEVLPVNPNYDE---------I--E--------------GLK 58 (138)
T ss_dssp ---CCEEEEETCCSCTTSHHHHHHHHHHHTT-------CEEEEECTTCSE---------E--T--------------TEE
T ss_pred ccCCCeEEEEeecCCCCCHHHHHHHHHHHCC-------CEEEEeCCCCCe---------E--C--------------Cee
Confidence 345678999999 999999999999999 875555544221 1 1 245
Q ss_pred ecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 134 ADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+++|+...+|++++++|+..+.++++++.. .+.+.+++..
T Consensus 59 ~~~s~~el~~~vDlvii~vp~~~v~~v~~~~~~-~g~~~i~~~~ 101 (138)
T 1y81_A 59 CYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVE-AGFKKLWFQP 101 (138)
T ss_dssp CBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHH-TTCCEEEECT
T ss_pred ecCCHHHhCCCCCEEEEEeCHHHHHHHHHHHHH-cCCCEEEEcC
Confidence 667787766789999999999999999988766 3445555543
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.36 E-value=9.7e-07 Score=85.81 Aligned_cols=107 Identities=13% Similarity=0.234 Sum_probs=71.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|.+|||+|||+|.||+++|..|+.+| . +|.++|+++++ .+..+..+..... . ...+..+..+++
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~-------~~~v~l~Di~~~~--~~g~a~dL~~~~~-~-----~~~~~~v~~t~d 67 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQ-------LGDVVLFDIAQGM--PNGKALDLLQTCP-I-----EGVDFKVRGTND 67 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT-------CCEEEEECSSSSH--HHHHHHHHHTTHH-H-----HTCCCCEEEESC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC-------CceEEEEeCChHH--HHHHHHHHHhhhh-h-----cCCCcEEEEcCC
Confidence 55689999999999999999999998 5 99999998865 1111222322100 0 001224555667
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
. +++.+||+||++.... .++++.+.+.++. ++.+++..+|.++
T Consensus 68 ~-~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd 126 (321)
T 3p7m_A 68 Y-KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLD 126 (321)
T ss_dssp G-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH
T ss_pred H-HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchH
Confidence 5 4689999999997431 2344455566654 7888888888554
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=7.8e-07 Score=89.17 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=72.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|||||+|.||..+|..+...| .+|.+|+|++.. . .+ .+....++
T Consensus 143 l~gktlGiIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~~------~-----~~-------------~~~~~~~l 191 (404)
T 1sc6_A 143 ARGKKLGIIGYGHIGTQLGILAESLG-------MYVYFYDIENKL------P-----LG-------------NATQVQHL 191 (404)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCC------C-----CT-------------TCEECSCH
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCC-------CEEEEEcCCchh------c-----cC-------------CceecCCH
Confidence 34478999999999999999999999 899999987643 0 01 12344578
Q ss_pred HHHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++++.||+|++++|.. .++.++ ++....+++++++|.++.|-..
T Consensus 192 ~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~v 238 (404)
T 1sc6_A 192 SDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVV 238 (404)
T ss_dssp HHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSB
T ss_pred HHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHH
Confidence 88889999999999973 555555 4455668899999999887544
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=73.79 Aligned_cols=94 Identities=9% Similarity=0.075 Sum_probs=61.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~ 138 (419)
.|++|.|+|+|.+|..++..|.+.| ++|++++++++. ++.+.+.+.... .. .+++
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g-------~~V~~id~~~~~------~~~~~~~~~~~~-----------~gd~~~~ 60 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAG-------KKVLAVDKSKEK------IELLEDEGFDAV-----------IADPTDE 60 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTT-------CCEEEEESCHHH------HHHHHHTTCEEE-----------ECCTTCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CeEEEEECCHHH------HHHHHHCCCcEE-----------ECCCCCH
Confidence 4678999999999999999999999 999999998765 566655442110 11 1222
Q ss_pred H---HH-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 139 E---NA-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 139 ~---ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+ ++ +.++|+||+++++......+-.....+....+++..
T Consensus 61 ~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia~~ 103 (141)
T 3llv_A 61 SFYRSLDLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRV 103 (141)
T ss_dssp HHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred HHHHhCCcccCCEEEEecCCHHHHHHHHHHHHHhCCceEEEEE
Confidence 2 11 357999999999754444333333334433444433
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.34 E-value=9.7e-07 Score=88.42 Aligned_cols=95 Identities=21% Similarity=0.302 Sum_probs=71.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||+|.||..+|..+...| .+|.+|++++.. . . + ......++
T Consensus 154 l~gktvGIIGlG~IG~~vA~~l~~~G-------~~V~~yd~~~~~------~----~-~-------------~~~~~~sl 202 (416)
T 3k5p_A 154 VRGKTLGIVGYGNIGSQVGNLAESLG-------MTVRYYDTSDKL------Q----Y-G-------------NVKPAASL 202 (416)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECTTCCC------C----B-T-------------TBEECSSH
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHCC-------CEEEEECCcchh------c----c-c-------------CcEecCCH
Confidence 33479999999999999999999999 899999987543 0 0 0 12345678
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++++.||+|++++|. ...+.++ ++....+++++++|.++.|-...
T Consensus 203 ~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd 250 (416)
T 3k5p_A 203 DELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVD 250 (416)
T ss_dssp HHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBC
T ss_pred HHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhh
Confidence 8889999999999996 4455554 34556678999999998876543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=84.63 Aligned_cols=109 Identities=14% Similarity=0.072 Sum_probs=68.3
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+..++||+|||+|.||+++|..|+.+|. ..+|.++|+++++ .+..+..+.... + .+...++.+++
T Consensus 3 ~~~~~kI~IIGaG~vG~sla~~l~~~~~-----~~ev~l~Di~~~~--~~~~~~dl~~~~------~--~~~~~~~i~~~ 67 (316)
T 1ldn_A 3 NNGGARVVVIGAGFVGASYVFALMNQGI-----ADEIVLIDANESK--AIGDAMDFNHGK------V--FAPKPVDIWHG 67 (316)
T ss_dssp TTTSCEEEEECCSHHHHHHHHHHHHHTC-----CSEEEEECSSHHH--HHHHHHHHHHHT------T--SSSSCCEEEEC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCC-----CCEEEEEeCCcch--HHHHHhhHHHHh------h--hcCCCeEEEcC
Confidence 3456899999999999999999998872 1489999998643 111111222210 0 01112223333
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+++.+||+||++++.. .+.++.+.+.++. ++.+++..+|.++
T Consensus 68 ~~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv~ 127 (316)
T 1ldn_A 68 DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVD 127 (316)
T ss_dssp CGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHH
T ss_pred cHHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCchH
Confidence 345689999999997642 2444556666654 6777777888554
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=75.86 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=64.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC-
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD- 137 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~- 137 (419)
..++|.|+|+|.||..++..|.+. | ++|+++++++++ ++.+.+.|....+ . -.++
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g-------~~V~vid~~~~~------~~~~~~~g~~~~~-g---------d~~~~ 94 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYG-------KISLGIEIREEA------AQQHRSEGRNVIS-G---------DATDP 94 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHC-------SCEEEEESCHHH------HHHHHHTTCCEEE-C---------CTTCH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccC-------CeEEEEECCHHH------HHHHHHCCCCEEE-c---------CCCCH
Confidence 356899999999999999999999 9 899999998765 5666654422100 0 0122
Q ss_pred --HHHH--hcCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEEeecC
Q 014757 138 --LENA--VKDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 138 --~~ea--~~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+.++ +.++|+||+++|+.. ...++..+ ..+.++..++..+++
T Consensus 95 ~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~-~~~~~~~~ii~~~~~ 141 (183)
T 3c85_A 95 DFWERILDTGHVKLVLLAMPHHQGNQTALEQL-QRRNYKGQIAAIAEY 141 (183)
T ss_dssp HHHHTBCSCCCCCEEEECCSSHHHHHHHHHHH-HHTTCCSEEEEEESS
T ss_pred HHHHhccCCCCCCEEEEeCCChHHHHHHHHHH-HHHCCCCEEEEEECC
Confidence 2233 567999999999744 33334433 334555666665553
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=8.9e-07 Score=86.76 Aligned_cols=94 Identities=16% Similarity=0.257 Sum_probs=70.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|..|...| .+|.+|+|+++. .... + +.. .+++
T Consensus 147 ~gktvgIiGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~~--------~~~~-~--------------~~~-~~l~ 195 (343)
T 2yq5_A 147 YNLTVGLIGVGHIGSAVAEIFSAMG-------AKVIAYDVAYNP--------EFEP-F--------------LTY-TDFD 195 (343)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCG--------GGTT-T--------------CEE-CCHH
T ss_pred CCCeEEEEecCHHHHHHHHHHhhCC-------CEEEEECCChhh--------hhhc-c--------------ccc-cCHH
Confidence 3479999999999999999999999 899999998642 1111 1 122 3788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+++.+||+|++++|. ..++.++ .+....+++++++|.+..|-...
T Consensus 196 ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd 242 (343)
T 2yq5_A 196 TVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVD 242 (343)
T ss_dssp HHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBC
T ss_pred HHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhh
Confidence 888999999999995 3444443 34456678999999998776543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=71.23 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=64.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.+|+|+|+|+|.||..++..|.+.|. ++|++++|++++ .+.+...+.... ...+.-..+.+
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~------~~v~~~~r~~~~------~~~~~~~~~~~~-------~~d~~~~~~~~ 64 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSN------YSVTVADHDLAA------LAVLNRMGVATK-------QVDAKDEAGLA 64 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSS------EEEEEEESCHHH------HHHHHTTTCEEE-------ECCTTCHHHHH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCC------ceEEEEeCCHHH------HHHHHhCCCcEE-------EecCCCHHHHH
Confidence 35799999999999999999999983 789999998654 444443221100 00010112234
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+++.++|+||.++|......+++.... .+...+.++.
T Consensus 65 ~~~~~~d~vi~~~~~~~~~~~~~~~~~---~g~~~~~~~~ 101 (118)
T 3ic5_A 65 KALGGFDAVISAAPFFLTPIIAKAAKA---AGAHYFDLTE 101 (118)
T ss_dssp HHTTTCSEEEECSCGGGHHHHHHHHHH---TTCEEECCCS
T ss_pred HHHcCCCEEEECCCchhhHHHHHHHHH---hCCCEEEecC
Confidence 556789999999998776666655443 3555665553
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-06 Score=71.91 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=63.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH-
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL- 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~- 138 (419)
...+|.|+|+|.+|..+|..|.+.| ++|++++++++. ++.+.+.|....+ ++ .++.
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g-------~~v~vid~~~~~------~~~~~~~g~~~i~-gd---------~~~~~ 62 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASD-------IPLVVIETSRTR------VDELRERGVRAVL-GN---------AANEE 62 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTT-------CCEEEEESCHHH------HHHHHHTTCEEEE-SC---------TTSHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC-------CCEEEEECCHHH------HHHHHHcCCCEEE-CC---------CCCHH
Confidence 3468999999999999999999999 999999999766 6666664432110 00 1222
Q ss_pred --HH-HhcCCCEEEEccCcchHHH-HHHHHhccCCCCcEEEEeec
Q 014757 139 --EN-AVKDANMLVFVTPHQFMEG-ICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 139 --~e-a~~~aDlVilavp~~~~~~-vl~~l~~~l~~~tiivs~~n 179 (419)
++ .+.++|+||+++++..... ++..+.. +.++..++...+
T Consensus 63 ~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~-~~~~~~iiar~~ 106 (140)
T 3fwz_A 63 IMQLAHLECAKWLILTIPNGYEAGEIVASARA-KNPDIEIIARAH 106 (140)
T ss_dssp HHHHTTGGGCSEEEECCSCHHHHHHHHHHHHH-HCSSSEEEEEES
T ss_pred HHHhcCcccCCEEEEECCChHHHHHHHHHHHH-HCCCCeEEEEEC
Confidence 11 1468999999999854333 3333333 344555655554
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-06 Score=84.05 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=70.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||.|.||..+|..|...| .+|++|+|+++. . ..+ . +.. .++
T Consensus 143 l~g~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~d~~~~~-------~-~~~-~--------------~~~-~~l 191 (333)
T 1dxy_A 143 LGQQTVGVMGTGHIGQVAIKLFKGFG-------AKVIAYDPYPMK-------G-DHP-D--------------FDY-VSL 191 (333)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCS-------S-CCT-T--------------CEE-CCH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEECCCcch-------h-hHh-c--------------ccc-CCH
Confidence 34478999999999999999999999 899999998754 1 110 0 122 367
Q ss_pred HHHhcCCCEEEEccCcc-hHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPHQ-FMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~-~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++++..+|+|++++|.. .++.++ ++..+.+++++++|.++.|-..
T Consensus 192 ~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v 238 (333)
T 1dxy_A 192 EDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLI 238 (333)
T ss_dssp HHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSB
T ss_pred HHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCccc
Confidence 78888999999999973 455444 3455668899999999876443
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-06 Score=86.04 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=70.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||+|.||..+|+.|...| .+|.+|+|+++. . ..+ . +.. .+++
T Consensus 145 ~g~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~d~~~~~------~--~~~-~--------------~~~-~~l~ 193 (331)
T 1xdw_A 145 RNCTVGVVGLGRIGRVAAQIFHGMG-------ATVIGEDVFEIK------G--IED-Y--------------CTQ-VSLD 193 (331)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCC------S--CTT-T--------------CEE-CCHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEECCCccH------H--HHh-c--------------ccc-CCHH
Confidence 3478999999999999999999999 899999998754 1 111 0 122 3677
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++..+|+|++++|. ..++.++ ++..+.+++++++|.++.|-..
T Consensus 194 ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~v 239 (331)
T 1xdw_A 194 EVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLV 239 (331)
T ss_dssp HHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGB
T ss_pred HHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccc
Confidence 888899999999996 3444444 3455668899999999877544
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.9e-06 Score=77.08 Aligned_cols=81 Identities=14% Similarity=0.268 Sum_probs=62.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|.||..++..|.+.| ++| .+|++++.. +. ..+++++
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g-------~~lv~v~d~~~~~-------~~---------------------~~~~~~~ 45 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNG-------FEIAAILDVRGEH-------EK---------------------MVRGIDE 45 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEEECSSCCC-------TT---------------------EESSHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcCC-------CEEEEEEecCcch-------hh---------------------hcCCHHH
Confidence 68999999999999999999888 787 689987421 10 3467777
Q ss_pred Hh-cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 141 AV-KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 141 a~-~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
++ .++|+|++|+|+....+++... +..|..+++.+.+
T Consensus 46 l~~~~~DvVv~~~~~~~~~~~~~~~---l~~G~~vv~~~~~ 83 (236)
T 2dc1_A 46 FLQREMDVAVEAASQQAVKDYAEKI---LKAGIDLIVLSTG 83 (236)
T ss_dssp HTTSCCSEEEECSCHHHHHHHHHHH---HHTTCEEEESCGG
T ss_pred HhcCCCCEEEECCCHHHHHHHHHHH---HHCCCcEEEECcc
Confidence 77 6899999999998776666443 3457778777653
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-06 Score=80.94 Aligned_cols=104 Identities=8% Similarity=0.188 Sum_probs=70.1
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
||+|||+|.||++++..|+.+++ .+|.++|++++++ +..+..+..... . ...+..+..+++. +++
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l------~el~L~Di~~~~~--~g~~~dl~~~~~-~-----~~~~~~i~~t~d~-~a~ 65 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGY------DDLLLIARTPGKP--QGEALDLAHAAA-E-----LGVDIRISGSNSY-EDM 65 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC------SCEEEECSSTTHH--HHHHHHHHHHHH-H-----HTCCCCEEEESCG-GGG
T ss_pred CEEEECcCHHHHHHHHHHHhCCC------CEEEEEcCChhhH--HHHHHHHHHhhh-h-----cCCCeEEEECCCH-HHh
Confidence 79999999999999999998882 2799999987651 111222222100 0 0002246666777 468
Q ss_pred cCCCEEEEccCcch----------------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 143 KDANMLVFVTPHQF----------------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 143 ~~aDlVilavp~~~----------------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+||+||++.+... +.++.+.+.++. ++.+++..+|.++
T Consensus 66 ~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~ 120 (308)
T 2d4a_B 66 RGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNPVD 120 (308)
T ss_dssp TTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence 99999999976432 666777777764 7777777888554
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.6e-06 Score=82.54 Aligned_cols=107 Identities=16% Similarity=0.277 Sum_probs=69.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCC--CCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEE--TLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~--~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
|.++||+|||+|.||+++|..|+.+| + +|.++|+++ ++. +.....+.... +-...+..+..+
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~g-------~~~v~l~D~~~~~~~~--~g~a~dl~~~~------~~~~~~~~i~~t 70 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQKE-------LADVVLVDIPQLENPT--KGKALDMLEAS------PVQGFDANIIGT 70 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT-------CCEEEEECCGGGHHHH--HHHHHHHHHHH------HHHTCCCCEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC-------CCeEEEEeccchHHHH--HHhhhhHHHhh------hhccCCCEEEEc
Confidence 34579999999999999999999999 7 999999983 321 11111111100 000012245666
Q ss_pred CCHHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.+ ++.+||+||++.... .++++.+.+.++ .++.+++..+|.++
T Consensus 71 ~d~~-a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNPvd 131 (315)
T 3tl2_A 71 SDYA-DTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPVD 131 (315)
T ss_dssp SCGG-GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred CCHH-HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCChHH
Confidence 6764 589999999997421 234445556555 57888888888554
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.4e-06 Score=82.13 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=68.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|+|||+|.||..+|..|...| .+|++|+|++++ .+.+.+.|. ......++
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G-------~~V~~~d~~~~~------~~~~~~~g~------------~~~~~~~l 209 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALG-------ANVKVGARSSAH------LARITEMGL------------VPFHTDEL 209 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESSHHH------HHHHHHTTC------------EEEEGGGH
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHHCCC------------eEEchhhH
Confidence 34579999999999999999999999 899999998643 333333221 01112467
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
++.+.++|+|++++|...+.. .....++++.++|++..|
T Consensus 210 ~~~l~~aDvVi~~~p~~~i~~---~~~~~mk~g~~lin~a~g 248 (300)
T 2rir_A 210 KEHVKDIDICINTIPSMILNQ---TVLSSMTPKTLILDLASR 248 (300)
T ss_dssp HHHSTTCSEEEECCSSCCBCH---HHHTTSCTTCEEEECSST
T ss_pred HHHhhCCCEEEECCChhhhCH---HHHHhCCCCCEEEEEeCC
Confidence 777889999999999854322 234567889999998764
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.4e-06 Score=77.85 Aligned_cols=133 Identities=13% Similarity=0.159 Sum_probs=81.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|.||||+|+|+|.||..++..+.+.+ +++. +++++++. .. ++.++++
T Consensus 1 M~MmkI~ViGaGrMG~~i~~~l~~~~-------~eLva~~d~~~~~-----------~~--------------gv~v~~d 48 (243)
T 3qy9_A 1 MASMKILLIGYGAMNQRVARLAEEKG-------HEIVGVIENTPKA-----------TT--------------PYQQYQH 48 (243)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEECSSCC-------------C--------------CSCBCSC
T ss_pred CCceEEEEECcCHHHHHHHHHHHhCC-------CEEEEEEecCccc-----------cC--------------CCceeCC
Confidence 45799999999999999999999987 5543 45655421 11 2345677
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHh
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAV 217 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~ 217 (419)
++++. ++|+||-++.+..+.+.++ +..+..+|..++|+..+ . .+.+.+. .....++..|++..-+
T Consensus 49 l~~l~-~~DVvIDft~p~a~~~~~~-----l~~g~~vVigTTG~s~e-----~-~~~l~~a-a~~~~v~~a~N~S~Gv-- 113 (243)
T 3qy9_A 49 IADVK-GADVAIDFSNPNLLFPLLD-----EDFHLPLVVATTGEKEK-----L-LNKLDEL-SQNMPVFFSANMSYGV-- 113 (243)
T ss_dssp TTTCT-TCSEEEECSCHHHHHHHHT-----SCCCCCEEECCCSSHHH-----H-HHHHHHH-TTTSEEEECSSCCHHH--
T ss_pred HHHHh-CCCEEEEeCChHHHHHHHH-----HhcCCceEeCCCCCCHH-----H-HHHHHHH-HhcCCEEEECCccHHH--
Confidence 77766 8999996665555444443 55677777788887532 1 2333333 2335667778764311
Q ss_pred cCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014757 218 EKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 218 g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
.. -...++...+.|.. +.+++
T Consensus 114 ~l----------~~~~~~~aa~~l~~--~dieI 134 (243)
T 3qy9_A 114 HA----------LTKILAAAVPLLDD--FDIEL 134 (243)
T ss_dssp HH----------HHHHHHHHHHHTTT--SEEEE
T ss_pred HH----------HHHHHHHHHHhcCC--CCEEE
Confidence 00 12455667777764 55554
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.3e-06 Score=78.12 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=66.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC---
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD--- 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~--- 137 (419)
|||.|+|+|.+|..+|..|.+.| ++|++++++++. ++.+.+. +... ..++ .++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g-------~~v~vid~~~~~------~~~l~~~~~~~~-i~gd---------~~~~~~ 57 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRK-------YGVVIINKDREL------CEEFAKKLKATI-IHGD---------GSHKEI 57 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTT-------CCEEEEESCHHH------HHHHHHHSSSEE-EESC---------TTSHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-------CeEEEEECCHHH------HHHHHHHcCCeE-EEcC---------CCCHHH
Confidence 78999999999999999999999 999999998765 5555432 2110 0000 112
Q ss_pred HHHH-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 138 LENA-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 138 ~~ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
++++ +.++|+||+++++......+..+...+.+...++..++..
T Consensus 58 l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~ 102 (218)
T 3l4b_C 58 LRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDP 102 (218)
T ss_dssp HHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred HHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCc
Confidence 2222 5689999999999876666666555444455566555533
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-06 Score=82.09 Aligned_cols=94 Identities=16% Similarity=0.232 Sum_probs=66.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|+|||+|.||..+|..|...| .+|++|+|++++ .+.+.+.|.. .....++
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G-------~~V~~~dr~~~~------~~~~~~~g~~------------~~~~~~l 207 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALG-------AKVKVGARESDL------LARIAEMGME------------PFHISKA 207 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESSHHH------HHHHHHTTSE------------EEEGGGH
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC-------CEEEEEECCHHH------HHHHHHCCCe------------ecChhhH
Confidence 34478999999999999999999999 899999998643 2333332310 1112456
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
++.+.++|+|++++|...+.. +....++++.++|++..|
T Consensus 208 ~~~l~~aDvVi~~~p~~~i~~---~~l~~mk~~~~lin~ar~ 246 (293)
T 3d4o_A 208 AQELRDVDVCINTIPALVVTA---NVLAEMPSHTFVIDLASK 246 (293)
T ss_dssp HHHTTTCSEEEECCSSCCBCH---HHHHHSCTTCEEEECSST
T ss_pred HHHhcCCCEEEECCChHHhCH---HHHHhcCCCCEEEEecCC
Confidence 677889999999999744322 123346788999998754
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-06 Score=85.82 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=69.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|..|...| .+|.+|++.++. . ..+ . ...+++
T Consensus 115 ~g~tvGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~~---------~-~~g--------------~-~~~~l~ 162 (380)
T 2o4c_A 115 AERTYGVVGAGQVGGRLVEVLRGLG-------WKVLVCDPPRQA---------R-EPD--------------G-EFVSLE 162 (380)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECHHHHH---------H-STT--------------S-CCCCHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCC-------CEEEEEcCChhh---------h-ccC--------------c-ccCCHH
Confidence 4478999999999999999999999 899999975321 1 111 1 124677
Q ss_pred HHhcCCCEEEEccCcch-----HHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 140 NAVKDANMLVFVTPHQF-----MEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~~aDlVilavp~~~-----~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++.+||+|++++|... ++.++ ++..+.+++++++|.++.|-..
T Consensus 163 ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vv 212 (380)
T 2o4c_A 163 RLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVV 212 (380)
T ss_dssp HHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGB
T ss_pred HHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCccc
Confidence 88889999999999643 45554 3466778899999999887544
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=3.7e-06 Score=81.77 Aligned_cols=107 Identities=16% Similarity=0.087 Sum_probs=72.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+||+|||+|.||+.+|..|+.+|.. ++|.++|+++++ .+..+..+.... . +....++..++|.+
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~-----~ev~L~Di~~~~--~~g~a~DL~~~~-~------~~~~~~i~~t~d~~ 85 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLA-----DEVALVDVMEDK--LKGEMMDLEHGS-L------FLHTAKIVSGKDYS 85 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCC-----SEEEEECSCHHH--HHHHHHHHHHHG-G------GSCCSEEEEESSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC-----CeEEEEECCHHH--HHHHHHHhhhhh-h------cccCCeEEEcCCHH
Confidence 468999999999999999999999821 389999997654 111112222210 0 01123456677887
Q ss_pred HHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+ +++||+||++.... .++++.+.+.++ .++.+++..+|.++
T Consensus 86 ~-~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPvd 142 (330)
T 3ldh_A 86 V-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELGT 142 (330)
T ss_dssp S-CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred H-hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCccH
Confidence 5 89999999986431 255566677776 67899998888554
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-06 Score=86.20 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=70.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||.|.||..+|..|...| .+|.+|++..+ .. ..+ ....++
T Consensus 117 l~gktvGIIGlG~IG~~vA~~l~a~G-------~~V~~~d~~~~---------~~-~~~---------------~~~~sl 164 (381)
T 3oet_A 117 LRDRTIGIVGVGNVGSRLQTRLEALG-------IRTLLCDPPRA---------AR-GDE---------------GDFRTL 164 (381)
T ss_dssp GGGCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECHHHH---------HT-TCC---------------SCBCCH
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCC-------CEEEEECCChH---------Hh-ccC---------------cccCCH
Confidence 34478999999999999999999999 89999997531 11 111 123578
Q ss_pred HHHhcCCCEEEEccCcc-h----HHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPHQ-F----MEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~-~----~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++.+||+|++++|.. . ++.++ ++....+++++++|.++.|-...
T Consensus 165 ~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvd 216 (381)
T 3oet_A 165 DELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVD 216 (381)
T ss_dssp HHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccC
Confidence 88889999999999953 3 44444 34556678999999998876553
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=4e-06 Score=81.59 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=68.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..+|||+|||+|.||+++|..|+..|+. .+|.++|+++++ .+..+..++.. . + +. +.+++.+++.
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~-----~~l~l~D~~~~k--~~g~a~DL~~~-~-~-~~-----~~~v~i~~~~ 67 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGIT-----DELVVIDVNKEK--AMGDVMDLNHG-K-A-FA-----PQPVKTSYGT 67 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCC-----SEEEEECSCHHH--HHHHHHHHHHT-G-G-GS-----SSCCEEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCC-----ceEEEEecchHH--HHHHHHHHHhc-c-c-cc-----cCCeEEEeCc
Confidence 3468999999999999999999999821 389999997654 11111124331 1 1 00 0122333333
Q ss_pred HHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+++.+||+||++.... .++++.+.+.++ .++.+++..+|.++
T Consensus 68 ~~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNPvd 126 (326)
T 3pqe_A 68 YEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPVD 126 (326)
T ss_dssp GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred HHHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCChHH
Confidence 35689999999998531 133444555554 56888988888554
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.9e-06 Score=81.42 Aligned_cols=108 Identities=16% Similarity=0.205 Sum_probs=68.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|.+|||+|||+|.+|.+++..|+..|.. .+|.++|++++++ +..+..+... . ...+ .+..+.. +.
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~~-----~ei~L~Di~~~~~--~g~~~dl~~~-~--~~~~---~~~~v~~--~~ 68 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSIV-----DELVIIDLDTEKV--RGDVMDLKHA-T--PYSP---TTVRVKA--GE 68 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSC-----SEEEEECSCHHHH--HHHHHHHHHH-G--GGSS---SCCEEEE--CC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCC-----CEEEEEeCChhHh--hhhhhhHHhh-h--hhcC---CCeEEEe--CC
Confidence 4568999999999999999999988721 4899999876441 1111122221 0 0110 1112333 44
Q ss_pred HHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+++++||+||++++.. .+.++.+.+.++ .++.+++..+|.++
T Consensus 69 ~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~ 127 (317)
T 3d0o_A 69 YSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVD 127 (317)
T ss_dssp GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCcHH
Confidence 56689999999998642 234445556665 57888877888554
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.5e-06 Score=70.83 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=59.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~ 138 (419)
.+++|.|+|+|.+|..++..|.+.| ++|++++++++. .+.+.+.+... +.. .++.
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g-------~~v~~~d~~~~~------~~~~~~~~~~~-----------~~~d~~~~ 60 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMG-------HEVLAVDINEEK------VNAYASYATHA-----------VIANATEE 60 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTT-------CCCEEEESCHHH------HHTTTTTCSEE-----------EECCTTCH
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHhCCEE-----------EEeCCCCH
Confidence 3568999999999999999999999 899999987543 33333222100 000 1122
Q ss_pred H---HH-hcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecC
Q 014757 139 E---NA-VKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 139 ~---ea-~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+ ++ +.++|+||.+++.. .....+....+.+.++ .++..+++
T Consensus 61 ~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~ 106 (144)
T 2hmt_A 61 NELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIP-NIWVKAQN 106 (144)
T ss_dssp HHHHTTTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCS-EEEEECCS
T ss_pred HHHHhcCCCCCCEEEECCCCchHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence 2 22 46799999999974 4333333333444555 45544443
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.7e-06 Score=72.96 Aligned_cols=85 Identities=8% Similarity=0.059 Sum_probs=62.1
Q ss_pred cCeEEEECc----chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGS----GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
..+|+|||+ |.||..++..|.+.| ++|+.++++..- +++ . ++++..
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G-------~~v~~vnp~~~g-------~~i--~--------------G~~~~~ 62 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQG-------YHVIPVSPKVAG-------KTL--L--------------GQQGYA 62 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHT-------CCEEEECSSSTT-------SEE--T--------------TEECCS
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCC-------CEEEEeCCcccc-------ccc--C--------------CeeccC
Confidence 457999999 899999999999999 776666554310 111 1 245666
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEE
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs 176 (419)
+++++....|++++++|+..+.++++++.. ...+.+++.
T Consensus 63 sl~el~~~~Dlvii~vp~~~v~~v~~~~~~-~g~~~i~i~ 101 (145)
T 2duw_A 63 TLADVPEKVDMVDVFRNSEAAWGVAQEAIA-IGAKTLWLQ 101 (145)
T ss_dssp STTTCSSCCSEEECCSCSTHHHHHHHHHHH-HTCCEEECC
T ss_pred CHHHcCCCCCEEEEEeCHHHHHHHHHHHHH-cCCCEEEEc
Confidence 777766689999999999999999988766 344555553
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=5.5e-06 Score=80.55 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=69.7
Q ss_pred CCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 56 DGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
+.+...|||+|||+|.||+++|..|+..|.. .++.++|+++++ .+..+..+... .. +. .+++.+
T Consensus 4 ~~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~-----~el~l~D~~~~k--~~g~a~DL~~~--~~-~~------~~~~i~ 67 (326)
T 3vku_A 4 ITDKDHQKVILVGDGAVGSSYAYAMVLQGIA-----QEIGIVDIFKDK--TKGDAIDLEDA--LP-FT------SPKKIY 67 (326)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHHTCC-----SEEEEECSCHHH--HHHHHHHHHTT--GG-GS------CCCEEE
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHhCCCC-----CeEEEEeCChHH--HHHHHhhHhhh--hh-hc------CCcEEE
Confidence 4567789999999999999999999999831 389999997654 11111122221 00 11 123344
Q ss_pred CCHHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++..+++.+||+||++.... .+.++.+.+.++ .++.+++..+|.++
T Consensus 68 ~~~~~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtNPvd 129 (326)
T 3vku_A 68 SAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVD 129 (326)
T ss_dssp ECCGGGGTTCSEEEECCCCC----------------CHHHHHHHHHTT-TCCSEEEECSSSHH
T ss_pred ECcHHHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccCchH
Confidence 44345689999999997532 134455566664 46888888888554
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.8e-06 Score=81.79 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=60.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHc--CCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
+.++||+|||+|.||..++..|.+. + .++ .++++++++ .+.+.+.. +++.+
T Consensus 11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~-------~~lvav~d~~~~~------~~~~~~~~-------------~~~~~ 64 (354)
T 3q2i_A 11 DRKIRFALVGCGRIANNHFGALEKHADR-------AELIDVCDIDPAA------LKAAVERT-------------GARGH 64 (354)
T ss_dssp SSCEEEEEECCSTTHHHHHHHHHHTTTT-------EEEEEEECSSHHH------HHHHHHHH-------------CCEEE
T ss_pred CCcceEEEEcCcHHHHHHHHHHHhCCCC-------eEEEEEEcCCHHH------HHHHHHHc-------------CCcee
Confidence 4568999999999999999999987 4 665 478887654 44443321 13567
Q ss_pred CCHHHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014757 136 PDLENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 136 ~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
++.++++. ++|+|++|+|+....+++.....
T Consensus 65 ~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~ 97 (354)
T 3q2i_A 65 ASLTDMLAQTDADIVILTTPSGLHPTQSIECSE 97 (354)
T ss_dssp SCHHHHHHHCCCSEEEECSCGGGHHHHHHHHHH
T ss_pred CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHH
Confidence 88888775 79999999999776666655443
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.6e-06 Score=80.73 Aligned_cols=106 Identities=20% Similarity=0.373 Sum_probs=67.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||+++|..|+.+|.. .+|.++|++++++ +..+..++.... . . . .+.++..+.+. ++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~-----~el~l~D~~~~k~--~g~a~DL~~~~~-~--~-~--~~~~v~~~~~~-~a 66 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVA-----KEVVMVDIKDGMP--QGKALDMRESSP-I--H-G--FDTRVTGTNDY-GP 66 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCS-----SEEEEECSSTTHH--HHHHHHHHHHHH-H--H-T--CCCEEEEESSS-GG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC-----CEEEEEeCchHHH--HHHHHHHhcccc-c--c-C--CCcEEEECCCH-HH
Confidence 7999999999999999999998821 3899999988651 111112222100 0 0 0 01123334444 56
Q ss_pred hcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 142 VKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+||+||++.... .++++.+.+.++ .++.+++..+|.++
T Consensus 67 ~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd 122 (314)
T 3nep_X 67 TEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPLD 122 (314)
T ss_dssp GTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSHH
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCchh
Confidence 89999999998542 133344555554 57889988888654
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.7e-06 Score=81.48 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=60.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.++||+|||+|.||..++..|.+... .+|. ++++++++ ++.+.+.. +++..++.
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~------~~l~av~d~~~~~------~~~~a~~~-------------g~~~~~~~ 57 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPD------LELVVIADPFIEG------AQRLAEAN-------------GAEAVASP 57 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTT------EEEEEEECSSHHH------HHHHHHTT-------------TCEEESSH
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCC------cEEEEEECCCHHH------HHHHHHHc-------------CCceeCCH
Confidence 46799999999999999999988631 6655 78887654 44444321 13567888
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014757 139 ENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
++++. ++|+|++|+|+....+++.....
T Consensus 58 ~~~l~~~~~D~V~i~tp~~~h~~~~~~al~ 87 (344)
T 3euw_A 58 DEVFARDDIDGIVIGSPTSTHVDLITRAVE 87 (344)
T ss_dssp HHHTTCSCCCEEEECSCGGGHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEeCCchhhHHHHHHHHH
Confidence 88877 79999999999777776655443
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.8e-06 Score=80.85 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=64.4
Q ss_pred CCCcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEe
Q 014757 58 VLHKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~ 134 (419)
+|.++||+|||+|.||.. ++..|.+... .++. ++++++++ ++.+.+. + +..
T Consensus 3 ~M~~~~igiIG~G~~g~~~~~~~l~~~~~------~~l~av~d~~~~~------~~~~a~~~~--------------~~~ 56 (308)
T 3uuw_A 3 AMKNIKMGMIGLGSIAQKAYLPILTKSER------FEFVGAFTPNKVK------REKICSDYR--------------IMP 56 (308)
T ss_dssp --CCCEEEEECCSHHHHHHTHHHHTSCSS------SEEEEEECSCHHH------HHHHHHHHT--------------CCB
T ss_pred ccccCcEEEEecCHHHHHHHHHHHHhCCC------eEEEEEECCCHHH------HHHHHHHcC--------------CCC
Confidence 356789999999999996 8888876431 5665 78888765 4444432 2 123
Q ss_pred cCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 135 DPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++.++.+.++|+|++|+|+....+++..... .+.-|+ +-|.+.
T Consensus 57 ~~~~~~ll~~~D~V~i~tp~~~h~~~~~~al~---~gk~vl-~EKP~~ 100 (308)
T 3uuw_A 57 FDSIESLAKKCDCIFLHSSTETHYEIIKILLN---LGVHVY-VDKPLA 100 (308)
T ss_dssp CSCHHHHHTTCSEEEECCCGGGHHHHHHHHHH---TTCEEE-ECSSSS
T ss_pred cCCHHHHHhcCCEEEEeCCcHhHHHHHHHHHH---CCCcEE-EcCCCC
Confidence 67888888899999999999877776655443 344433 445443
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-06 Score=86.10 Aligned_cols=99 Identities=12% Similarity=0.197 Sum_probs=67.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..++|+|||+|.||..++..|... +. .+|++|+|++++ .+++.+.-.. .++. .+...+++
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~------~~V~V~~r~~~~------a~~la~~~~~---~~g~----~~~~~~~~ 188 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGI------EEIVAYDTDPLA------TAKLIANLKE---YSGL----TIRRASSV 188 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCC------CEEEEECSSHHH------HHHHHHHHTT---CTTC----EEEECSSH
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCC------cEEEEEcCCHHH------HHHHHHHHHh---ccCc----eEEEeCCH
Confidence 456899999999999999887643 32 689999999766 3444332000 0011 24456788
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
++++.++|+||+|||+.....++. ...+++++.|+.+..
T Consensus 189 ~eav~~aDiVi~aTps~~~~pvl~--~~~l~~G~~V~~vgs 227 (350)
T 1x7d_A 189 AEAVKGVDIITTVTADKAYATIIT--PDMLEPGMHLNAVGG 227 (350)
T ss_dssp HHHHTTCSEEEECCCCSSEEEEEC--GGGCCTTCEEEECSC
T ss_pred HHHHhcCCEEEEeccCCCCCceec--HHHcCCCCEEEECCC
Confidence 888999999999999853222221 246778888887753
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=4.6e-06 Score=80.95 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=67.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..|||+|||+|.+|.+++..|+..+.. .++.++|+++++ .+..+..+...- .+. .++++..+..
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~-----~el~L~Di~~~~--~~g~~~dl~~~~---~~~------~~~~v~~~~~ 67 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIA-----EEFVIVDVVKDR--TKGDALDLEDAQ---AFT------APKKIYSGEY 67 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCC-----SEEEEECSSHHH--HHHHHHHHHGGG---GGS------CCCEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCC-----CEEEEEeCCchH--HHHHHHHHHHHH---Hhc------CCeEEEECCH
Confidence 348999999999999999999998731 389999997654 111122222210 011 1222333445
Q ss_pred HHhcCCCEEEEccCcch----------------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVTPHQF----------------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~~~----------------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++++||+||++.+... ++++.+.+.++ .++.+++..+|.++
T Consensus 68 ~a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~ 125 (318)
T 1ez4_A 68 SDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVD 125 (318)
T ss_dssp GGGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcHH
Confidence 56899999999986532 33444555555 57888888888654
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-06 Score=82.81 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=63.9
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCHHHH
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+|+|||+|.||.+++..|.+.| .+|++++|++++ .+.+.+. + .. .++++++
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g-------~~v~v~~r~~~~------~~~l~~~~~--------------~~-~~~~~~~ 169 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAG-------LEVWVWNRTPQR------ALALAEEFG--------------LR-AVPLEKA 169 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSHHH------HHHHHHHHT--------------CE-ECCGGGG
T ss_pred eEEEECCcHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHHHhc--------------cc-hhhHhhc
Confidence 8999999999999999999999 799999998654 3444331 1 11 2456666
Q ss_pred hcCCCEEEEccCcchHH---HHHHHHhccCCCCcEEEEeecC
Q 014757 142 VKDANMLVFVTPHQFME---GICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~---~vl~~l~~~l~~~tiivs~~nG 180 (419)
.++|+||+|+|..... ..+. .+.++++++++++..+
T Consensus 170 -~~~Divi~~tp~~~~~~~~~~l~--~~~l~~g~~viD~~~~ 208 (263)
T 2d5c_A 170 -REARLLVNATRVGLEDPSASPLP--AELFPEEGAAVDLVYR 208 (263)
T ss_dssp -GGCSEEEECSSTTTTCTTCCSSC--GGGSCSSSEEEESCCS
T ss_pred -cCCCEEEEccCCCCCCCCCCCCC--HHHcCCCCEEEEeecC
Confidence 8899999999986422 2221 3567788999987643
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.5e-06 Score=80.68 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=68.5
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+....|||+|||+|.+|.+++..|+..+.. .++.++|+++++ .+..+..+.. .. .+. .++++..
T Consensus 5 ~~~~~~KI~IiGaG~vG~~la~~l~~~~~~-----~el~L~Di~~~~--~~g~~~dl~~-~~--~~~------~~~~i~~ 68 (326)
T 2zqz_A 5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIA-----QEIGIVDIFKDK--TKGDAIDLSN-AL--PFT------SPKKIYS 68 (326)
T ss_dssp -CCCCCEEEEECCSHHHHHHHHHHHHHTCC-----SEEEEECSCHHH--HHHHHHHHHT-TG--GGS------CCCEEEE
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHcCCCC-----CEEEEEeCCchH--hHHHHHHHHH-HH--Hhc------CCeEEEE
Confidence 355568999999999999999999988731 489999997654 1111122222 10 011 1223333
Q ss_pred CHHHHhcCCCEEEEccCcch----------------HHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPHQF----------------MEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~----------------~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+..+++++||+||++.+... ++++.+.+.++ .++.+++..+|.++
T Consensus 69 ~~~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~ 129 (326)
T 2zqz_A 69 AEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVD 129 (326)
T ss_dssp CCGGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHH
T ss_pred CCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCcHH
Confidence 44556899999999986522 33344445555 57788888888654
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=7.9e-06 Score=80.24 Aligned_cols=98 Identities=11% Similarity=0.043 Sum_probs=63.7
Q ss_pred CCCCCcCeEEEECcchHHH-HHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeE
Q 014757 56 DGVLHKSKVTVVGSGNWGS-VASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~ 133 (419)
+..|.++||+|||+|.||. .++..|.+... .+|. ++++++++ ++.+.+.. ++.
T Consensus 22 ~~~m~~~rigiIG~G~~g~~~~~~~l~~~~~------~~l~av~d~~~~~------~~~~a~~~-------------g~~ 76 (350)
T 3rc1_A 22 PANANPIRVGVIGCADIAWRRALPALEAEPL------TEVTAIASRRWDR------AKRFTERF-------------GGE 76 (350)
T ss_dssp ----CCEEEEEESCCHHHHHTHHHHHHHCTT------EEEEEEEESSHHH------HHHHHHHH-------------CSE
T ss_pred CCCCCceEEEEEcCcHHHHHHHHHHHHhCCC------eEEEEEEcCCHHH------HHHHHHHc-------------CCC
Confidence 3456678999999999998 78898888731 6664 78887654 44443321 123
Q ss_pred ecCCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 134 ADPDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 134 ~~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..++.++++. +.|+|++|+|+....+++..... .|.-| .+-|.+.
T Consensus 77 ~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---aGk~V-l~EKP~a 123 (350)
T 3rc1_A 77 PVEGYPALLERDDVDAVYVPLPAVLHAEWIDRALR---AGKHV-LAEKPLT 123 (350)
T ss_dssp EEESHHHHHTCTTCSEEEECCCGGGHHHHHHHHHH---TTCEE-EEESSSC
T ss_pred CcCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---CCCcE-EEeCCCC
Confidence 4478888775 58999999999777666655443 34433 3445444
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.06 E-value=8.2e-06 Score=78.97 Aligned_cols=93 Identities=11% Similarity=0.105 Sum_probs=67.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..++|+|||+|.||...+..|.+. +. .+|++|+|+ + .+++++.+.+. |. .+... +
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~------~~V~v~~r~--~--a~~la~~l~~~~g~------------~~~~~-~ 176 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFAL------EAILVHDPY--A--SPEILERIGRRCGV------------PARMA-A 176 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCC------CEEEEECTT--C--CHHHHHHHHHHHTS------------CEEEC-C
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCC------cEEEEECCc--H--HHHHHHHHHHhcCC------------eEEEe-C
Confidence 446899999999999999999874 32 689999999 3 34555555432 21 23455 8
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+++++.++|+||.|||+.. .++. .+++++++.|+++..
T Consensus 177 ~~eav~~aDIVi~aT~s~~--pvl~--~~~l~~G~~V~~vGs 214 (313)
T 3hdj_A 177 PADIAAQADIVVTATRSTT--PLFA--GQALRAGAFVGAIGS 214 (313)
T ss_dssp HHHHHHHCSEEEECCCCSS--CSSC--GGGCCTTCEEEECCC
T ss_pred HHHHHhhCCEEEEccCCCC--cccC--HHHcCCCcEEEECCC
Confidence 8888999999999999842 2222 356788998887743
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=78.53 Aligned_cols=109 Identities=15% Similarity=0.173 Sum_probs=71.4
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
....+||+|||+|.||+++|..|+..|. ..+|.++|+++++ .+..+..+.... . +.....+..+++
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~-----~~el~L~Di~~~~--~~g~a~DL~~~~-~------~~~~~~i~~~~d 81 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDL-----ADELALVDVIEDK--LKGEMMDLQHGS-L------FLKTPKIVSSKD 81 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTC-----CSEEEEECSCHHH--HHHHHHHHHHTG-G------GCSCCEEEECSS
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCC-----CceEEEEeCChHH--HHHHHHhhhhhh-h------ccCCCeEEEcCC
Confidence 4456899999999999999999999882 1389999987654 111112233210 0 001123455677
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+ ++.+||+||++.-.. -+.++.+.+.++ .++.+++..+|.++
T Consensus 82 ~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvd 140 (331)
T 4aj2_A 82 YS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPVD 140 (331)
T ss_dssp GG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred HH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHH
Confidence 76 489999999986431 244455666665 67889999988654
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.7e-06 Score=80.32 Aligned_cols=81 Identities=15% Similarity=0.332 Sum_probs=58.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHc-CCCCCCCCceE-EEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEe
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASN-TLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~ 134 (419)
++.++||+|||+|.||..++..|.+. + .+| .++++++++ .+.+.+. + +..
T Consensus 2 M~~~~~vgiiG~G~~g~~~~~~l~~~~~-------~~lvav~d~~~~~------~~~~~~~~g--------------~~~ 54 (354)
T 3db2_A 2 MYNPVGVAAIGLGRWAYVMADAYTKSEK-------LKLVTCYSRTEDK------REKFGKRYN--------------CAG 54 (354)
T ss_dssp CCCCEEEEEECCSHHHHHHHHHHTTCSS-------EEEEEEECSSHHH------HHHHHHHHT--------------CCC
T ss_pred CCCcceEEEEccCHHHHHHHHHHHhCCC-------cEEEEEECCCHHH------HHHHHHHcC--------------CCC
Confidence 34567999999999999999999876 4 664 478887654 3444332 2 234
Q ss_pred cCCHHHHh--cCCCEEEEccCcchHHHHHHHHh
Q 014757 135 DPDLENAV--KDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 135 ~~~~~ea~--~~aDlVilavp~~~~~~vl~~l~ 165 (419)
+++.++++ .+.|+|++|+|+....+++....
T Consensus 55 ~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al 87 (354)
T 3db2_A 55 DATMEALLAREDVEMVIITVPNDKHAEVIEQCA 87 (354)
T ss_dssp CSSHHHHHHCSSCCEEEECSCTTSHHHHHHHHH
T ss_pred cCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHH
Confidence 67888877 56999999999976666655443
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.9e-06 Score=79.51 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=59.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCe-EecC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNV-VADP 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i-~~~~ 136 (419)
|.++||+|||+|.||..++..|.+... .+|. ++++++++ ++.+.+.. ++ +.++
T Consensus 3 m~~~~igiiG~G~~g~~~~~~l~~~~~------~~l~av~d~~~~~------~~~~~~~~-------------~~~~~~~ 57 (330)
T 3e9m_A 3 LDKIRYGIMSTAQIVPRFVAGLRESAQ------AEVRGIASRRLEN------AQKMAKEL-------------AIPVAYG 57 (330)
T ss_dssp CCCEEEEECSCCTTHHHHHHHHHHSSS------EEEEEEBCSSSHH------HHHHHHHT-------------TCCCCBS
T ss_pred CCeEEEEEECchHHHHHHHHHHHhCCC------cEEEEEEeCCHHH------HHHHHHHc-------------CCCceeC
Confidence 356799999999999999999988631 5655 77887655 44444321 11 3567
Q ss_pred CHHHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014757 137 DLENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 137 ~~~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+.++++. ++|+|++|+|+....+++.....
T Consensus 58 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~ 89 (330)
T 3e9m_A 58 SYEELCKDETIDIIYIPTYNQGHYSAAKLALS 89 (330)
T ss_dssp SHHHHHHCTTCSEEEECCCGGGHHHHHHHHHH
T ss_pred CHHHHhcCCCCCEEEEcCCCHHHHHHHHHHHH
Confidence 8888776 79999999999777666655443
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.00 E-value=7.7e-06 Score=79.50 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=64.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..++|+|||+|.||..++..|.+. +. .+|.+|+|++++ .+++++.+...+ ..+. .+++
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~------~~V~v~~r~~~~--a~~la~~~~~~~------------~~~~-~~~~ 182 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDI------GEVKAYDVREKA--AKKFVSYCEDRG------------ISAS-VQPA 182 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCC------CEEEEECSSHHH--HHHHHHHHHHTT------------CCEE-ECCH
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCc------cEEEEECCCHHH--HHHHHHHHHhcC------------ceEE-ECCH
Confidence 446899999999999999999873 32 689999999876 333333333211 0244 6788
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
++++ ++|+|++|||+.. .++. ...+++++.|+.+
T Consensus 183 ~e~v-~aDvVi~aTp~~~--pv~~--~~~l~~G~~V~~i 216 (322)
T 1omo_A 183 EEAS-RCDVLVTTTPSRK--PVVK--AEWVEEGTHINAI 216 (322)
T ss_dssp HHHT-SSSEEEECCCCSS--CCBC--GGGCCTTCEEEEC
T ss_pred HHHh-CCCEEEEeeCCCC--ceec--HHHcCCCeEEEEC
Confidence 8888 9999999999743 2221 2457788888776
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-05 Score=78.78 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=69.7
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|.+|||+|||+ |.+|+.+|..++..|. .++|.++|+++++ .+..+..+.... ++ ..++..+++
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~-----~~evvLiDi~~~k--~~g~a~DL~~~~-----~~----~~~i~~t~d 69 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRL-----TPNLCLYDPFAVG--LEGVAEEIRHCG-----FE----GLNLTFTSD 69 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTC-----CSCEEEECSCHHH--HHHHHHHHHHHC-----CT----TCCCEEESC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCC-----CCEEEEEeCCchh--HHHHHHhhhhCc-----CC----CCceEEcCC
Confidence 45689999997 9999999999999882 1589999987644 111112233211 11 124567788
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcE-EEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVE-AISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~ti-ivs~~nGi~ 182 (419)
..+++++||+||++.-.. .++++.+.+.++. ++.+ ++..+|.++
T Consensus 70 ~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNPvd 130 (343)
T 3fi9_A 70 IKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNPAD 130 (343)
T ss_dssp HHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSSHH
T ss_pred HHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCchH
Confidence 877899999999996321 1334445555553 5664 777788554
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-05 Score=76.94 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=59.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|+||+|||+|.||..++..|.+... .+|. ++++++++ .+.+.+.. ++. .++.+
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~------~~l~av~d~~~~~------~~~~~~~~-------------~~~-~~~~~ 56 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNAD------ARLVAVADAFPAA------AEAIAGAY-------------GCE-VRTID 56 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTT------EEEEEEECSSHHH------HHHHHHHT-------------TCE-ECCHH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCC------cEEEEEECCCHHH------HHHHHHHh-------------CCC-cCCHH
Confidence 5799999999999999999988631 6665 78887654 44444421 234 67888
Q ss_pred HHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014757 140 NAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 140 ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+++. ++|+|++|+|+....+++.....
T Consensus 57 ~~l~~~~~D~V~i~tp~~~h~~~~~~al~ 85 (331)
T 4hkt_A 57 AIEAAADIDAVVICTPTDTHADLIERFAR 85 (331)
T ss_dssp HHHHCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred HHhcCCCCCEEEEeCCchhHHHHHHHHHH
Confidence 8776 79999999999777666655443
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.9e-05 Score=75.67 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=68.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.+|+++|..|..++.. .++.++|.+++++ +..+-.+..... . ......+..+.+.+ +
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~-----~el~L~Di~~~~~--~G~a~DL~h~~~---~---~~~~~~i~~~~d~~-~ 66 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDV-----DEIALVDIAEDLA--VGEAMDLAHAAA---G---IDKYPKIVGGADYS-L 66 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC-----SEEEEECSSHHHH--HHHHHHHHHHHG---G---GTCCCEEEEESCGG-G
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC-----CEEEEEeCCCCcc--hhhhhhhhcccc---c---CCCCCeEecCCCHH-H
Confidence 8999999999999999999988732 5899999876431 111112222000 0 00112344566775 4
Q ss_pred hcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 142 VKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++||+||++.-. . -++++.+.+.++ .++.+++..+|.++
T Consensus 67 ~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvsNPvd 122 (294)
T 2x0j_A 67 LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMD 122 (294)
T ss_dssp GTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHH
T ss_pred hCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEecCcch
Confidence 8999999998742 1 234455556655 56888988998665
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.4e-05 Score=76.99 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=64.9
Q ss_pred CCCcCeEEEECcchHHHHHHHHHH-Hc-CCCCCCCCceEE-EEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeE
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIA-SN-TLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVV 133 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La-~~-G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~ 133 (419)
+|.++||+|||+|.||..++..|. +. + .+|. ++++++++ ++.+.+. +. .++
T Consensus 20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~-------~~lvav~d~~~~~------~~~~a~~~g~------------~~~ 74 (357)
T 3ec7_A 20 QGMTLKAGIVGIGMIGSDHLRRLANTVSG-------VEVVAVCDIVAGR------AQAALDKYAI------------EAK 74 (357)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTCTT-------EEEEEEECSSTTH------HHHHHHHHTC------------CCE
T ss_pred CCCeeeEEEECCcHHHHHHHHHHHhhCCC-------cEEEEEEeCCHHH------HHHHHHHhCC------------CCe
Confidence 455679999999999999999998 43 4 5654 78888776 4444432 21 134
Q ss_pred ecCCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 134 ADPDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 134 ~~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..++.++++. +.|+|++|+|+....+++..... .|.-| .+-|.+.
T Consensus 75 ~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---aGk~V-l~EKPla 121 (357)
T 3ec7_A 75 DYNDYHDLINDKDVEVVIITASNEAHADVAVAALN---ANKYV-FCEKPLA 121 (357)
T ss_dssp EESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---TTCEE-EEESSSC
T ss_pred eeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---CCCCE-EeecCcc
Confidence 6788888776 58999999999777666655443 34333 3445444
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-05 Score=75.08 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=56.0
Q ss_pred CCcCeEEEECcchHHHH-HHHHHHHc-CCCCCCCCceEE-EEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEe
Q 014757 59 LHKSKVTVVGSGNWGSV-ASKLIASN-TLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~-lA~~La~~-G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~ 134 (419)
|.++||+|||+|.||.. ++..|.+. + .++. ++++++++ .+.+.+. + +..
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~-------~~lvav~d~~~~~------~~~~~~~~g--------------~~~ 55 (319)
T 1tlt_A 3 LKKLRIGVVGLGGIAQKAWLPVLAAASD-------WTLQGAWSPTRAK------ALPICESWR--------------IPY 55 (319)
T ss_dssp --CEEEEEECCSTHHHHTHHHHHHSCSS-------EEEEEEECSSCTT------HHHHHHHHT--------------CCB
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCC-------eEEEEEECCCHHH------HHHHHHHcC--------------CCc
Confidence 45689999999999996 88888764 4 6665 88998876 4544432 2 124
Q ss_pred cCCHHHHhcCCCEEEEccCcchHHHHHHHHh
Q 014757 135 DPDLENAVKDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~~~~vl~~l~ 165 (419)
+++.++...++|+|++|+|+....+++....
T Consensus 56 ~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al 86 (319)
T 1tlt_A 56 ADSLSSLAASCDAVFVHSSTASHFDVVSTLL 86 (319)
T ss_dssp CSSHHHHHTTCSEEEECSCTTHHHHHHHHHH
T ss_pred cCcHHHhhcCCCEEEEeCCchhHHHHHHHHH
Confidence 5666655467999999999876666655543
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.7e-05 Score=76.68 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=67.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.+|.+++..|+..+. -.++.++|+++++ .+..+..+... . .+. .+..++. ++ .++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~-----~~el~L~Di~~~k--~~g~a~dl~~~--~-~~~----~~~~v~~-~~-~~a 64 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGV-----AREVVLVDLDRKL--AQAHAEDILHA--T-PFA----HPVWVWA-GS-YGD 64 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-----CSEEEEECSSHHH--HHHHHHHHHTT--G-GGS----CCCEEEE-CC-GGG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-----CCEEEEEeCChhH--HHHHHHHHHHh--H-hhc----CCeEEEE-CC-HHH
Confidence 799999999999999999998873 1589999998654 11112222221 0 001 1123443 34 456
Q ss_pred hcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 142 VKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++||+||++.+.. .++++.+.+.++ .++.+++..+|.++
T Consensus 65 ~~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~ 120 (310)
T 2xxj_A 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVD 120 (310)
T ss_dssp GTTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred hCCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCchH
Confidence 89999999998642 134444555555 57788887888654
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.8e-05 Score=76.94 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=62.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCe-EecC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNV-VADP 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i-~~~~ 136 (419)
|.++||+|||+|.||..++..|.+.+. .+| .+++|++++ ++.+.+.. ++ +.++
T Consensus 3 m~~~rigiiG~G~ig~~~~~~l~~~~~------~~~~av~d~~~~~------~~~~a~~~-------------~~~~~~~ 57 (329)
T 3evn_A 3 LSKVRYGVVSTAKVAPRFIEGVRLAGN------GEVVAVSSRTLES------AQAFANKY-------------HLPKAYD 57 (329)
T ss_dssp --CEEEEEEBCCTTHHHHHHHHHHHCS------EEEEEEECSCSST------TCC---CC-------------CCSCEES
T ss_pred CCceEEEEEechHHHHHHHHHHHhCCC------cEEEEEEcCCHHH------HHHHHHHc-------------CCCcccC
Confidence 456899999999999999999987751 454 478888776 22222211 11 2567
Q ss_pred CHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.++.+. +.|+|++|+|+....+++..... .+.-|+ +-|.+.
T Consensus 58 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a 101 (329)
T 3evn_A 58 KLEDMLADESIDVIYVATINQDHYKVAKAALL---AGKHVL-VEKPFT 101 (329)
T ss_dssp CHHHHHTCTTCCEEEECSCGGGHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred CHHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---CCCeEE-EccCCc
Confidence 8888776 78999999999777666655433 344333 445443
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.9e-05 Score=77.13 Aligned_cols=81 Identities=9% Similarity=0.094 Sum_probs=58.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|+||+|||+|.||..++..|.+... .++. ++++++++ .+.+.+. +. .+.+++.
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~------~~l~av~d~~~~~------~~~~~~~~~~-------------~~~~~~~ 56 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDD------AILYAISDVREDR------LREMKEKLGV-------------EKAYKDP 56 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTT------EEEEEEECSCHHH------HHHHHHHHTC-------------SEEESSH
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCC------cEEEEEECCCHHH------HHHHHHHhCC-------------CceeCCH
Confidence 4799999999999999999987531 5654 78887654 3444332 21 1356788
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014757 139 ENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
++++. ++|+|++|+|+....+++.....
T Consensus 57 ~~ll~~~~~D~V~i~tp~~~h~~~~~~al~ 86 (344)
T 3ezy_A 57 HELIEDPNVDAVLVCSSTNTHSELVIACAK 86 (344)
T ss_dssp HHHHHCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEcCCCcchHHHHHHHHh
Confidence 88776 79999999999777666655443
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=4.1e-05 Score=74.11 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=68.7
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe---cCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA---DPD 137 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~---~~~ 137 (419)
|||+|||+ |.+|.+++..|+..|. .++|.++|+++. +..+..+.... .+..++. +++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~-----~~ev~L~Di~~~----~~~a~dL~~~~----------~~~~l~~~~~t~d 61 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPL-----VSRLTLYDIAHT----PGVAADLSHIE----------TRATVKGYLGPEQ 61 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTT-----CSEEEEEESSSH----HHHHHHHTTSS----------SSCEEEEEESGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-----CcEEEEEeCCcc----HHHHHHHhccC----------cCceEEEecCCCC
Confidence 69999998 9999999999998873 168999999862 11122232210 1123454 357
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++++.++|+||++.... .++++.+.+.++. ++.+++..+|.++
T Consensus 62 ~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNPv~ 121 (314)
T 1mld_A 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVN 121 (314)
T ss_dssp HHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHH
T ss_pred HHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCcc
Confidence 887899999999997431 2555566666654 6777777888654
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.91 E-value=9.8e-06 Score=80.04 Aligned_cols=94 Identities=14% Similarity=0.166 Sum_probs=61.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..|||.|||+|.+|..++..|++. ++|++++++.+. .+.+++.... +.+ .+.-..++.
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~~--------~~v~~~~~~~~~------~~~~~~~~~~------~~~--d~~d~~~l~ 72 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKDE--------FDVYIGDVNNEN------LEKVKEFATP------LKV--DASNFDKLV 72 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT--------SEEEEEESCHHH------HHHHTTTSEE------EEC--CTTCHHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHhcC--------CCeEEEEcCHHH------HHHHhccCCc------EEE--ecCCHHHHH
Confidence 458999999999999999999764 799999998654 4444432100 000 000012234
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++++|+||.|+|...-..+++.... .++-+++++
T Consensus 73 ~~~~~~DvVi~~~p~~~~~~v~~~~~~---~g~~yvD~s 108 (365)
T 3abi_A 73 EVMKEFELVIGALPGFLGFKSIKAAIK---SKVDMVDVS 108 (365)
T ss_dssp HHHTTCSEEEECCCGGGHHHHHHHHHH---HTCEEEECC
T ss_pred HHHhCCCEEEEecCCcccchHHHHHHh---cCcceEeee
Confidence 567899999999999776666655433 356666665
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.4e-05 Score=73.45 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=55.7
Q ss_pred CCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe
Q 014757 56 DGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
|.+|.++||+|||+|.||..++..|.+... .++. +++++++. .+. .|.. ...
T Consensus 4 M~~M~~irv~IIG~G~iG~~~~~~l~~~~~------~elvav~d~~~~~------~~~---~g~~------------~~~ 56 (304)
T 3bio_A 4 MTDDKKIRAAIVGYGNIGRYALQALREAPD------FEIAGIVRRNPAE------VPF---ELQP------------FRV 56 (304)
T ss_dssp ----CCEEEEEECCSHHHHHHHHHHHHCTT------EEEEEEECC----------------CCTT------------SCE
T ss_pred CccCCCCEEEEECChHHHHHHHHHHhcCCC------CEEEEEEcCCHHH------HHH---cCCC------------cCC
Confidence 444567899999999999999999987531 6766 78887654 222 2211 112
Q ss_pred cCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 135 DPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
.+++.+. .++|+||+|+|+....+......+ .+..++..
T Consensus 57 ~~~l~~~-~~~DvViiatp~~~h~~~~~~al~---aG~~Vi~e 95 (304)
T 3bio_A 57 VSDIEQL-ESVDVALVCSPSREVERTALEILK---KGICTADS 95 (304)
T ss_dssp ESSGGGS-SSCCEEEECSCHHHHHHHHHHHHT---TTCEEEEC
T ss_pred HHHHHhC-CCCCEEEECCCchhhHHHHHHHHH---cCCeEEEC
Confidence 3455443 689999999998776666655443 46666644
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.88 E-value=9e-06 Score=78.49 Aligned_cols=93 Identities=16% Similarity=0.260 Sum_probs=61.4
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
.+.++||+|||+|.||..++..|.+.+. .+ |.++++++++ .+.+.+ .+...+
T Consensus 7 ~~~~~~igiIG~G~~g~~~~~~l~~~~~------~~~v~v~d~~~~~------~~~~~~---------------~~~~~~ 59 (315)
T 3c1a_A 7 NNSPVRLALIGAGRWGKNYIRTIAGLPG------AALVRLASSNPDN------LALVPP---------------GCVIES 59 (315)
T ss_dssp --CCEEEEEEECTTTTTTHHHHHHHCTT------EEEEEEEESCHHH------HTTCCT---------------TCEEES
T ss_pred CCCcceEEEECCcHHHHHHHHHHHhCCC------cEEEEEEeCCHHH------HHHHHh---------------hCcccC
Confidence 4556899999999999999999988631 55 4588887532 111111 023567
Q ss_pred CHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 137 DLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 137 ~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+.++++. ++|+|++|+|+....+++..... .+..|+ +-|.+
T Consensus 60 ~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~---~Gk~v~-~eKP~ 102 (315)
T 3c1a_A 60 DWRSVVSAPEVEAVIIATPPATHAEITLAAIA---SGKAVL-VEKPL 102 (315)
T ss_dssp STHHHHTCTTCCEEEEESCGGGHHHHHHHHHH---TTCEEE-EESSS
T ss_pred CHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH---CCCcEE-EcCCC
Confidence 7777774 79999999999877776655433 354443 34434
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.4e-05 Score=75.90 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=63.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|.++||+|||+|.||...+..|.+... .+|. ++++++++ .+..++.+ +...+|
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~l~~~~~------~~l~av~d~~~~~------~~~a~~~g--------------~~~~~~ 56 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVTLASAADN------LEVHGVFDILAEK------REAAAQKG--------------LKIYES 56 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHTSTT------EEEEEEECSSHHH------HHHHHTTT--------------CCBCSC
T ss_pred CCcCcEEEECcCHHHHHHHHHHHhCCC------cEEEEEEcCCHHH------HHHHHhcC--------------CceeCC
Confidence 456799999999999999999887631 5664 67777544 33322222 345678
Q ss_pred HHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++.+. +.|+|++|+|+....++...... .|.-|+ +-|.+.
T Consensus 57 ~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---aGkhVl-~EKP~a 99 (359)
T 3e18_A 57 YEAVLADEKVDAVLIATPNDSHKELAISALE---AGKHVV-CEKPVT 99 (359)
T ss_dssp HHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred HHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---CCCCEE-eeCCCc
Confidence 888776 78999999999776666655443 344433 445444
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.87 E-value=2.4e-05 Score=67.10 Aligned_cols=98 Identities=11% Similarity=0.142 Sum_probs=62.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC-CCCCcchHHHHHHh---cCcCCccCCCCccCCCeEe-
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE-TLPSGEKLTDVINR---TNENVKYLPGIKLGKNVVA- 134 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~-~~~~~~~l~~~i~~---~g~~~~~~~~~~l~~~i~~- 134 (419)
..++|.|+|+|.+|..++..|.+.| ++|+++++++ +. .+.+.. .+... +..
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g-------~~V~vid~~~~~~------~~~~~~~~~~~~~~-----------i~gd 57 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRG-------QNVTVISNLPEDD------IKQLEQRLGDNADV-----------IPGD 57 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTT-------CCEEEEECCCHHH------HHHHHHHHCTTCEE-----------EESC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-------CCEEEEECCChHH------HHHHHHhhcCCCeE-----------EEcC
Confidence 4468999999999999999999999 9999999974 32 233332 12110 000
Q ss_pred cCC---HHHH-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 135 DPD---LENA-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 135 ~~~---~~ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
.++ +.++ +.++|+||+++++......+....+.+.+...++...++.
T Consensus 58 ~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 58 SNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp TTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred CCCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 112 2233 6789999999998765555544444443444455544433
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.8e-05 Score=74.86 Aligned_cols=88 Identities=8% Similarity=0.198 Sum_probs=60.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHH-Hc-CCCCCCCCce-EEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEe
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIA-SN-TLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La-~~-G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~ 134 (419)
+.++||+|||+|.||..++..|. +. + .+ |.++++++++ .+.+.+. |. ...
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~-------~~~vav~d~~~~~------~~~~a~~~g~-------------~~~ 59 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNKIQG-------VKLVAACALDSNQ------LEWAKNELGV-------------ETT 59 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHTCSS-------EEEEEEECSCHHH------HHHHHHTTCC-------------SEE
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhcCCC-------cEEEEEecCCHHH------HHHHHHHhCC-------------Ccc
Confidence 45689999999999999999998 53 4 56 4578887654 4444332 21 135
Q ss_pred cCCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEE
Q 014757 135 DPDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAI 175 (419)
Q Consensus 135 ~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiiv 175 (419)
.++.++++. ++|+|++|+|+....+++..... .+..|+
T Consensus 60 ~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~---~G~~v~ 99 (346)
T 3cea_A 60 YTNYKDMIDTENIDAIFIVAPTPFHPEMTIYAMN---AGLNVF 99 (346)
T ss_dssp ESCHHHHHTTSCCSEEEECSCGGGHHHHHHHHHH---TTCEEE
T ss_pred cCCHHHHhcCCCCCEEEEeCChHhHHHHHHHHHH---CCCEEE
Confidence 678888775 69999999999776666554433 354443
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.9e-05 Score=74.92 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=58.4
Q ss_pred cCeEEEECcchHHHHHHHHHH-Hc-CCCCCCCCceEE-EEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGSGNWGSVASKLIA-SN-TLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La-~~-G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~ 136 (419)
++||+|||+|.||..++..|. +. + .++. ++++++++ .+.+.+. +. ..+.++
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~-------~~l~av~d~~~~~------~~~~~~~~g~------------~~~~~~ 56 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSG-------AEIVAVTDVNQEA------AQKVVEQYQL------------NATVYP 56 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSS-------EEEEEEECSSHHH------HHHHHHHTTC------------CCEEES
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCC-------cEEEEEEcCCHHH------HHHHHHHhCC------------CCeeeC
Confidence 469999999999999999998 43 4 5654 77887654 4444432 21 135678
Q ss_pred CHHHHhcC--CCEEEEccCcchHHHHHHHHhc
Q 014757 137 DLENAVKD--ANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 137 ~~~ea~~~--aDlVilavp~~~~~~vl~~l~~ 166 (419)
+.++++.+ .|+|++|+|+....+++.....
T Consensus 57 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~ 88 (344)
T 3mz0_A 57 NDDSLLADENVDAVLVTSWGPAHESSVLKAIK 88 (344)
T ss_dssp SHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred CHHHHhcCCCCCEEEECCCchhHHHHHHHHHH
Confidence 88887765 8999999999777666655443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-05 Score=78.59 Aligned_cols=106 Identities=11% Similarity=0.107 Sum_probs=66.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC--CCccCCCeE----
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP--GIKLGKNVV---- 133 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~--~~~l~~~i~---- 133 (419)
...||+|||+|.||..+++.+...| .+|+++||++++ .+.+.+.|.....++ ........+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG-------a~V~v~D~~~~~------l~~~~~lGa~~~~l~~~~~~~~gya~~~~~ 249 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG-------AKTTGYDVRPEV------AEQVRSVGAQWLDLGIDAAGEGGYARELSE 249 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT-------CEEEEECSSGGG------HHHHHHTTCEECCCC-------------CH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcCCeEEeccccccccccchhhhhH
Confidence 3468999999999999999999999 899999999876 455555443211100 000000000
Q ss_pred -----ecCCHHHHhcCCCEEEEcc--CcchHHH-HHHHHhccCCCCcEEEEee
Q 014757 134 -----ADPDLENAVKDANMLVFVT--PHQFMEG-ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 134 -----~~~~~~ea~~~aDlVilav--p~~~~~~-vl~~l~~~l~~~tiivs~~ 178 (419)
...++++++.++|+||.++ |...... +-++..+.++++.+||++.
T Consensus 250 ~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 250 AERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 0124567789999999986 4211111 1134455677899999885
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-05 Score=73.46 Aligned_cols=151 Identities=14% Similarity=0.145 Sum_probs=90.0
Q ss_pred CCCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 58 VLHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 58 ~~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.|.||||+|+| .|.||..++..+.+... .++. +++|+.+...++++. .+ -+ +..++.++
T Consensus 4 ~M~mikV~V~Ga~G~MG~~i~~~l~~~~~------~eLv~~~d~~~~~~~G~d~g-el----------~g--~~~gv~v~ 64 (272)
T 4f3y_A 4 SMSSMKIAIAGASGRMGRMLIEAVLAAPD------ATLVGALDRTGSPQLGQDAG-AF----------LG--KQTGVALT 64 (272)
T ss_dssp --CCEEEEESSTTSHHHHHHHHHHHHCTT------EEEEEEBCCTTCTTTTSBTT-TT----------TT--CCCSCBCB
T ss_pred CccccEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEEecCcccccccHH-HH----------hC--CCCCceec
Confidence 46689999999 89999999999987641 5544 467764320011100 00 01 11245667
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHH
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEI 215 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~ 215 (419)
+|+++++.++|+||-++++....+.+..... .+.-+|..+.|+..+ .. +.+.+. .....++..|++..-+
T Consensus 65 ~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~---~G~~vVigTTG~s~~-----~~-~~L~~a-a~~~~vv~a~N~s~Gv 134 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTLPEGTLVHLDAALR---HDVKLVIGTTGFSEP-----QK-AQLRAA-GEKIALVFSANMSVGV 134 (272)
T ss_dssp CCHHHHHHHCSEEEECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHH-----HH-HHHHHH-TTTSEEEECSCCCHHH
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHH-----HH-HHHHHH-hccCCEEEECCCCHHH
Confidence 8898888899999999988777666655443 366677777787531 12 333333 2234667777764311
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
. . -...++...+.|. .++.+++
T Consensus 135 ~--l----------~~~~~~~aa~~l~-~~~diei 156 (272)
T 4f3y_A 135 N--V----------TMKLLEFAAKQFA-QGYDIEI 156 (272)
T ss_dssp H--H----------HHHHHHHHHHHTS-SSCEEEE
T ss_pred H--H----------HHHHHHHHHHhcC-cCCCEEE
Confidence 0 0 1345566677775 3556655
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=6.5e-05 Score=74.81 Aligned_cols=98 Identities=12% Similarity=0.171 Sum_probs=72.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCC-cchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPS-GEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~-~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-+||+|||.|+-|.+-|.+|.++| .+|.+--|.....+ ... .+.-.+.| .++ .+.+
T Consensus 37 gK~IaVIGyGsQG~AqAlNLRDSG-------v~V~Vglr~~s~~e~~~S-~~~A~~~G--------------f~v-~~~~ 93 (491)
T 3ulk_A 37 GKKVVIVGCGAQGLNQGLNMRDSG-------LDISYALRKEAIAEKRAS-WRKATENG--------------FKV-GTYE 93 (491)
T ss_dssp TSEEEEESCSHHHHHHHHHHHHTT-------CEEEEEECHHHHHTTCHH-HHHHHHTT--------------CEE-EEHH
T ss_pred CCEEEEeCCChHhHHHHhHHHhcC-------CcEEEEeCCCCcccccch-HHHHHHCC--------------CEe-cCHH
Confidence 379999999999999999999999 89988777321000 001 12223333 222 3577
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
|+++.+|+|++-+|+.....+.+.|.|++++|..+... -|..
T Consensus 94 eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~fa-HGFn 135 (491)
T 3ulk_A 94 ELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYS-HGFN 135 (491)
T ss_dssp HHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEES-SCHH
T ss_pred HHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEec-Cccc
Confidence 88999999999999999999999999999999887643 3443
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.8e-05 Score=79.16 Aligned_cols=93 Identities=10% Similarity=0.014 Sum_probs=67.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||.|.||..+|..|...| .+|++|++++.. .......| +.. .++
T Consensus 255 l~GktVgIIG~G~IG~~vA~~l~~~G-------~~Viv~d~~~~~------~~~a~~~g--------------~~~-~~l 306 (479)
T 1v8b_A 255 ISGKIVVICGYGDVGKGCASSMKGLG-------ARVYITEIDPIC------AIQAVMEG--------------FNV-VTL 306 (479)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHHT-------CEEEEECSCHHH------HHHHHTTT--------------CEE-CCH
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCc-------CEEEEEeCChhh------HHHHHHcC--------------CEe-cCH
Confidence 34468999999999999999999999 899999988642 11111212 222 468
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
++++..+|+|++++....+- -.+....++++.+++.+..|-
T Consensus 307 ~ell~~aDiVi~~~~t~~lI--~~~~l~~MK~gailiNvgrg~ 347 (479)
T 1v8b_A 307 DEIVDKGDFFITCTGNVDVI--KLEHLLKMKNNAVVGNIGHFD 347 (479)
T ss_dssp HHHTTTCSEEEECCSSSSSB--CHHHHTTCCTTCEEEECSSTT
T ss_pred HHHHhcCCEEEECCChhhhc--CHHHHhhcCCCcEEEEeCCCC
Confidence 88899999999997553321 123445678999999987763
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.2e-05 Score=78.76 Aligned_cols=91 Identities=12% Similarity=0.032 Sum_probs=66.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++|+|+|.|.+|..+|..|...| .+|+++++++.. .......| .. ..++++
T Consensus 211 GktVgIiG~G~IG~~vA~~Lka~G-------a~Viv~D~~p~~------a~~A~~~G--------------~~-~~sL~e 262 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALRGFG-------ARVVVTEVDPIN------ALQAAMEG--------------YQ-VLLVED 262 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHTT--------------CE-ECCHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC-------CEEEEECCChhh------hHHHHHhC--------------Ce-ecCHHH
Confidence 368999999999999999999999 899999987643 22222222 12 247888
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
++..+|+|+++.....+-. .+....++++.+++.+..|-
T Consensus 263 al~~ADVVilt~gt~~iI~--~e~l~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 263 VVEEAHIFVTTTGNDDIIT--SEHFPRMRDDAIVCNIGHFD 301 (436)
T ss_dssp HTTTCSEEEECSSCSCSBC--TTTGGGCCTTEEEEECSSSG
T ss_pred HHhhCCEEEECCCCcCccC--HHHHhhcCCCcEEEEeCCCC
Confidence 9999999999876543311 23345678899999998764
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.9e-05 Score=77.36 Aligned_cols=106 Identities=9% Similarity=0.103 Sum_probs=66.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC-----C-CccCCCeE
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP-----G-IKLGKNVV 133 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~-----~-~~l~~~i~ 133 (419)
...||+|||+|.+|..+++.+...| .+|+++|+++++ .+.+.+.|......+ + .....-.+
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lG-------a~V~v~D~~~~~------l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~ 255 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLG-------AVVSATDVRPAA------KEQVASLGAKFIAVEDEEFKAAETAGGYAK 255 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSTTH------HHHHHHTTCEECCCCC--------------
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-------CEEEEEcCCHHH------HHHHHHcCCceeecccccccccccccchhh
Confidence 3468999999999999999999999 899999999875 455555443211000 0 00000000
Q ss_pred -e--------cCCHHHHhcCCCEEEEcc--CcchHHH-HHHHHhccCCCCcEEEEee
Q 014757 134 -A--------DPDLENAVKDANMLVFVT--PHQFMEG-ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 134 -~--------~~~~~ea~~~aDlVilav--p~~~~~~-vl~~l~~~l~~~tiivs~~ 178 (419)
. ..++++++.++|+||.|+ |...-.. +-++....++++.+||+++
T Consensus 256 e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 256 EMSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp ---CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 0 124567788999999986 3211111 1234556678999999986
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=4.5e-05 Score=65.19 Aligned_cols=87 Identities=8% Similarity=0.122 Sum_probs=63.1
Q ss_pred cCeEEEECc----chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGS----GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
..+|+|||+ |.+|..++..|.+.| ++ +|+.++.. +.+ . ++++..
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G-------~~--v~~Vnp~~-------~~i--~--------------G~~~y~ 69 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHG-------YD--VYPVNPKY-------EEV--L--------------GRKCYP 69 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT-------CE--EEEECTTC-------SEE--T--------------TEECBS
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCC-------CE--EEEECCCC-------CeE--C--------------CeeccC
Confidence 468999999 799999999999999 76 66666643 111 1 245667
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++++....|++++++|+....++++++... ....+ .++.|..
T Consensus 70 sl~~l~~~vDlvvi~vp~~~~~~vv~~~~~~-gi~~i--~~~~g~~ 112 (144)
T 2d59_A 70 SVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK-GAKVV--WFQYNTY 112 (144)
T ss_dssp SGGGCSSCCSEEEECSCHHHHHHHHHHHHHH-TCSEE--EECTTCC
T ss_pred CHHHcCCCCCEEEEEeCHHHHHHHHHHHHHc-CCCEE--EECCCch
Confidence 7777666799999999999999999877653 22333 3555553
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.77 E-value=9.8e-05 Score=71.76 Aligned_cols=82 Identities=9% Similarity=0.088 Sum_probs=57.3
Q ss_pred CCcCeEEEECcchHHH-HHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVGSGNWGS-VASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|.++||+|||+|.+|. .++..|...+ .+| .++++++++ .+.+.+.. + .++.++
T Consensus 2 M~~~rvgiiG~G~~~~~~~~~~l~~~~-------~~lvav~d~~~~~------~~~~a~~~------~------~~~~~~ 56 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLIDAG-------AELAGVFESDSDN------RAKFTSLF------P------SVPFAA 56 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHHHTT-------CEEEEEECSCTTS------CHHHHHHS------T------TCCBCS
T ss_pred CCccEEEEECCChHHHHHhhhhhcCCC-------cEEEEEeCCCHHH------HHHHHHhc------C------CCcccC
Confidence 4678999999999996 5777776666 675 689998876 34444321 0 123567
Q ss_pred CHHHHhc--CCCEEEEccCcchHHHHHHHHh
Q 014757 137 DLENAVK--DANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 137 ~~~ea~~--~aDlVilavp~~~~~~vl~~l~ 165 (419)
|.++.+. +.|+|++|+|+....+......
T Consensus 57 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al 87 (336)
T 2p2s_A 57 SAEQLITDASIDLIACAVIPCDRAELALRTL 87 (336)
T ss_dssp CHHHHHTCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred CHHHHhhCCCCCEEEEeCChhhHHHHHHHHH
Confidence 8888775 6899999999876666554443
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=3e-05 Score=79.23 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=66.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.||..+|..|...| .+|++|+|++.. ..+.. ..| ++. .+++
T Consensus 276 ~GktVgIIG~G~IG~~vA~~l~~~G-------~~V~v~d~~~~~-----~~~a~-~~G--------------~~~-~~l~ 327 (494)
T 3d64_A 276 AGKIAVVAGYGDVGKGCAQSLRGLG-------ATVWVTEIDPIC-----ALQAA-MEG--------------YRV-VTME 327 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTT-------CEEEEECSCHHH-----HHHHH-TTT--------------CEE-CCHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC-------CEEEEEeCChHh-----HHHHH-HcC--------------CEe-CCHH
Confidence 3468999999999999999999888 899999987632 01111 112 222 4688
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+++..+|+|++++....+-. .+....+++++++|.+..|-
T Consensus 328 ell~~aDiVi~~~~t~~lI~--~~~l~~MK~gAilINvgrg~ 367 (494)
T 3d64_A 328 YAADKADIFVTATGNYHVIN--HDHMKAMRHNAIVCNIGHFD 367 (494)
T ss_dssp HHTTTCSEEEECSSSSCSBC--HHHHHHCCTTEEEEECSSSS
T ss_pred HHHhcCCEEEECCCcccccC--HHHHhhCCCCcEEEEcCCCc
Confidence 88999999999996533211 23445578899999988763
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.75 E-value=7.1e-05 Score=73.58 Aligned_cols=99 Identities=10% Similarity=0.083 Sum_probs=64.0
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEec
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~ 135 (419)
++.++||+|||+|.||..++..|.+... .++ .++++++++ .+.+.+. +. +...+..
T Consensus 3 ~~~~~~vgiiG~G~ig~~~~~~l~~~~~------~~lv~v~d~~~~~------~~~~a~~~~~----------~~~~~~~ 60 (362)
T 1ydw_A 3 TETQIRIGVMGCADIARKVSRAIHLAPN------ATISGVASRSLEK------AKAFATANNY----------PESTKIH 60 (362)
T ss_dssp ---CEEEEEESCCTTHHHHHHHHHHCTT------EEEEEEECSSHHH------HHHHHHHTTC----------CTTCEEE
T ss_pred CCCceEEEEECchHHHHHHHHHHhhCCC------cEEEEEEcCCHHH------HHHHHHHhCC----------CCCCeee
Confidence 4566899999999999999999987631 554 577877654 3444332 21 1123466
Q ss_pred CCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.++++. ++|+|++|+|+....+++.... ..+.-|+ +-|.+.
T Consensus 61 ~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~aGk~V~-~EKP~a 105 (362)
T 1ydw_A 61 GSYESLLEDPEIDALYVPLPTSLHVEWAIKAA---EKGKHIL-LEKPVA 105 (362)
T ss_dssp SSHHHHHHCTTCCEEEECCCGGGHHHHHHHHH---TTTCEEE-ECSSCS
T ss_pred CCHHHHhcCCCCCEEEEcCChHHHHHHHHHHH---HCCCeEE-EecCCc
Confidence 78888765 5899999999987766665543 3455444 345443
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.75 E-value=7.5e-05 Score=72.33 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=58.6
Q ss_pred CeEEEECcchHHHHH-HHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCH
Q 014757 62 SKVTVVGSGNWGSVA-SKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 62 mkI~IIGaG~mG~~l-A~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|||+|||+|.||..+ +..|.+.+ .++ .++++++++ .+.+.+. +. .+..++.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~-------~~~vav~d~~~~~------~~~~~~~~g~-------------~~~~~~~ 54 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATG-------GEVVSMMSTSAER------GAAYATENGI-------------GKSVTSV 54 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTT-------CEEEEEECSCHHH------HHHHHHHTTC-------------SCCBSCH
T ss_pred CeEEEEcccHHHHHhhhHHhhcCC-------CeEEEEECCCHHH------HHHHHHHcCC-------------CcccCCH
Confidence 589999999999998 77887755 665 478887654 3444332 21 0245678
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEE
Q 014757 139 ENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAI 175 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiiv 175 (419)
++++. ++|+|++|+|+....+++..... .++.|+
T Consensus 55 ~~~l~~~~~D~V~i~tp~~~h~~~~~~al~---~Gk~v~ 90 (332)
T 2glx_A 55 EELVGDPDVDAVYVSTTNELHREQTLAAIR---AGKHVL 90 (332)
T ss_dssp HHHHTCTTCCEEEECSCGGGHHHHHHHHHH---TTCEEE
T ss_pred HHHhcCCCCCEEEEeCChhHhHHHHHHHHH---CCCeEE
Confidence 77765 59999999999777666655433 355443
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.73 E-value=4.9e-05 Score=74.15 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=71.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|||||.|.+|..+|..+..-| .+|..|++.+. +.....+ +. ..+++
T Consensus 140 ~g~tvGIiG~G~IG~~va~~~~~fg-------~~v~~~d~~~~--------~~~~~~~--------------~~-~~~l~ 189 (334)
T 3kb6_A 140 NRLTLGVIGTGRIGSRVAMYGLAFG-------MKVLCYDVVKR--------EDLKEKG--------------CV-YTSLD 189 (334)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCC--------HHHHHTT--------------CE-ECCHH
T ss_pred cCcEEEEECcchHHHHHHHhhcccC-------ceeeecCCccc--------hhhhhcC--------------ce-ecCHH
Confidence 3468999999999999999999888 89999998653 2223322 12 35788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+.++.||+|++.+|- ...+.++ ++....++++.++|....|-...
T Consensus 190 ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVd 236 (334)
T 3kb6_A 190 ELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVD 236 (334)
T ss_dssp HHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred HHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcccccc
Confidence 889999999999995 4454444 33445678999999998876554
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.9e-05 Score=73.99 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=62.4
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
+|+|||+|.||.+++..|.+.|. .+|++++|++++ ++++.+.- +.....++.+++
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~------~~I~v~nR~~~k------a~~la~~~-------------~~~~~~~~~~~~ 164 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGV------KDIWVVNRTIER------AKALDFPV-------------KIFSLDQLDEVV 164 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC------CCEEEEESCHHH------HHTCCSSC-------------EEEEGGGHHHHH
T ss_pred eEEEECcHHHHHHHHHHHHHcCC------CEEEEEeCCHHH------HHHHHHHc-------------ccCCHHHHHhhh
Confidence 89999999999999999999992 389999998654 33332210 112345566677
Q ss_pred cCCCEEEEccCcchH--HHHHHHHhccCCCCcEEEEeecC
Q 014757 143 KDANMLVFVTPHQFM--EGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 143 ~~aDlVilavp~~~~--~~vl~~l~~~l~~~tiivs~~nG 180 (419)
.++|+||.|||.... ...+. ...++++++|+++.-+
T Consensus 165 ~~aDiVInatp~gm~p~~~~i~--~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 165 KKAKSLFNTTSVGMKGEELPVS--DDSLKNLSLVYDVIYF 202 (253)
T ss_dssp HTCSEEEECSSTTTTSCCCSCC--HHHHTTCSEEEECSSS
T ss_pred cCCCEEEECCCCCCCCCCCCCC--HHHhCcCCEEEEeeCC
Confidence 899999999985211 01110 1234578999999866
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.72 E-value=3.6e-05 Score=74.51 Aligned_cols=79 Identities=8% Similarity=0.141 Sum_probs=53.2
Q ss_pred cCeEEEECcchHHH-HHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGSGNWGS-VASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~-~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~ 137 (419)
++||+|||+|.||. .++..|.+. + .+|.++++++++ .+.+.+. +.. ....+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~-------~~l~v~d~~~~~------~~~~a~~~g~~-------------~~~~~ 55 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPD-------IELVLCTRNPKV------LGTLATRYRVS-------------ATCTD 55 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTT-------EEEEEECSCHHH------HHHHHHHTTCC-------------CCCSS
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCC-------ceEEEEeCCHHH------HHHHHHHcCCC-------------ccccC
Confidence 47999999999998 588888765 4 677788887654 4444432 211 10222
Q ss_pred HHHHh-cCCCEEEEccCcchHHHHHHHHh
Q 014757 138 LENAV-KDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 138 ~~ea~-~~aDlVilavp~~~~~~vl~~l~ 165 (419)
..+.+ .++|+|++|+|+....+++....
T Consensus 56 ~~~~l~~~~D~V~i~tp~~~h~~~~~~al 84 (323)
T 1xea_A 56 YRDVLQYGVDAVMIHAATDVHSTLAAFFL 84 (323)
T ss_dssp TTGGGGGCCSEEEECSCGGGHHHHHHHHH
T ss_pred HHHHhhcCCCEEEEECCchhHHHHHHHHH
Confidence 23334 57999999999987777665543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.71 E-value=7.8e-05 Score=72.56 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=70.9
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecC----CCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFE----ETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~----~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
..|||+|+|+ |.+|+.++..|+..|...++..++|.++|++ +++ .+..+..+.... ..+...+..
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~--~~g~~~dl~~~~--------~~~~~~i~~ 73 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKA--LQGVMMEIDDCA--------FPLLAGMTA 73 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHH--HHHHHHHHHTTT--------CTTEEEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCcccccc--chhhHHHHhhhc--------ccccCcEEE
Confidence 3479999997 9999999999998873111111389999987 332 011112233210 011124666
Q ss_pred cCCHHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 135 DPDLENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++..++++++|+||++.... .+.++++.+..+.+++.+++..+|.++
T Consensus 74 ~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~ 137 (329)
T 1b8p_A 74 HADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPAN 137 (329)
T ss_dssp ESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred ecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchH
Confidence 788888899999999986421 134455566665336778888888553
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.67 E-value=5.6e-05 Score=74.37 Aligned_cols=96 Identities=13% Similarity=0.008 Sum_probs=62.5
Q ss_pred CCcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|.++||+|||+|.||.. ++..|.+... .+|. ++++++++ ++.+.+.. + ..+.++
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~------~~l~av~d~~~~~------~~~~a~~~------~------~~~~~~ 58 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQD------IRIVAACDSDLER------ARRVHRFI------S------DIPVLD 58 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTT------EEEEEEECSSHHH------HGGGGGTS------C------SCCEES
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCC------cEEEEEEcCCHHH------HHHHHHhc------C------CCcccC
Confidence 45679999999999985 8888877631 5655 78887654 33333311 0 134568
Q ss_pred CHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.++++. +.|+|++|+|+....++...... .|.-| .+-|.+.
T Consensus 59 ~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhV-l~EKPla 102 (359)
T 3m2t_A 59 NVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMS---KGVNV-FVEKPPC 102 (359)
T ss_dssp SHHHHHHHSCCSEEEECSCHHHHHHHHHHHHH---TTCEE-EECSCSC
T ss_pred CHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---CCCeE-EEECCCc
Confidence 8888776 56999999999776666655443 34433 3445443
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.64 E-value=8.3e-05 Score=72.24 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=61.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
++||+|||+|.||..++..|.+.+. ...+ |.+++|++++ ++.+.+. +. .+.+++.
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~----~~~~l~av~d~~~~~------a~~~a~~~~~-------------~~~~~~~ 58 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPR----SEHQVVAVAARDLSR------AKEFAQKHDI-------------PKAYGSY 58 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCT----TTEEEEEEECSSHHH------HHHHHHHHTC-------------SCEESSH
T ss_pred ccEEEEECchHHHHHHHHHHHhCCC----CCeEEEEEEcCCHHH------HHHHHHHcCC-------------CcccCCH
Confidence 4799999999999999999876541 0024 4577777654 4444432 21 0356788
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.+. +.|+|++|+|+....++...... .|.-| .+-|.+.
T Consensus 59 ~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---~GkhV-l~EKP~a 100 (334)
T 3ohs_X 59 EELAKDPNVEVAYVGTQHPQHKAAVMLCLA---AGKAV-LCEKPMG 100 (334)
T ss_dssp HHHHHCTTCCEEEECCCGGGHHHHHHHHHH---TTCEE-EEESSSS
T ss_pred HHHhcCCCCCEEEECCCcHHHHHHHHHHHh---cCCEE-EEECCCC
Confidence 88776 69999999999776666555443 34333 3445444
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.64 E-value=4.8e-05 Score=64.70 Aligned_cols=89 Identities=10% Similarity=0.138 Sum_probs=62.9
Q ss_pred cCeEEEECc----chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGS----GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
..+|+|||+ |.+|..++..|.+.| ++ +|.+++.+. . +.+ .++++..
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G-------~~--v~~vnp~~~-~----~~i----------------~G~~~~~ 62 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQG-------YR--VLPVNPRFQ-G----EEL----------------FGEEAVA 62 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTT-------CE--EEEECGGGT-T----SEE----------------TTEECBS
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCC-------CE--EEEeCCCcc-c----CcC----------------CCEEecC
Confidence 468999999 899999999999999 76 666665420 0 111 1345667
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++|+....|++++++|+..+.++++++... ....++ ++.|..
T Consensus 63 sl~el~~~vDlavi~vp~~~~~~v~~~~~~~-gi~~i~--~~~g~~ 105 (140)
T 1iuk_A 63 SLLDLKEPVDILDVFRPPSALMDHLPEVLAL-RPGLVW--LQSGIR 105 (140)
T ss_dssp SGGGCCSCCSEEEECSCHHHHTTTHHHHHHH-CCSCEE--ECTTCC
T ss_pred CHHHCCCCCCEEEEEeCHHHHHHHHHHHHHc-CCCEEE--EcCCcC
Confidence 7777666799999999999888888877653 223444 344553
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0002 Score=70.05 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=72.7
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+...||+|+|+ |.+|++++..|++..+..++-..++.++|..+.....+.++-.+... ...+...+..+++
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~--------~~~~~~~~~~~~~ 93 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDC--------AFPLLDKVVVTAD 93 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHT--------TCTTEEEEEEESC
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhc--------CccCCCcEEEcCC
Confidence 44459999996 99999999999987643322224799999865320001111122221 1112224566788
Q ss_pred HHHHhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.++++++|+||++--. . -++++.+.|.++..++.+|+.++|.++
T Consensus 94 ~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd 154 (345)
T 4h7p_A 94 PRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPAN 154 (345)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred hHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcc
Confidence 88889999999997632 1 244444556666567888888888654
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00011 Score=71.39 Aligned_cols=103 Identities=16% Similarity=0.243 Sum_probs=66.8
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe---c
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA---D 135 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~---~ 135 (419)
.+|||+|+| +|.+|..++..|++.|. -++|.++|++++. ..+..+.... .+..+.. +
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~-----~~ev~l~Di~~~~----~~~~dL~~~~----------~~~~v~~~~~t 67 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPL-----VSVLHLYDVVNAP----GVTADISHMD----------TGAVVRGFLGQ 67 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTT-----EEEEEEEESSSHH----HHHHHHHTSC----------SSCEEEEEESH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-----CCEEEEEeCCCcH----hHHHHhhccc----------ccceEEEEeCC
Confidence 458999999 79999999999998762 1579999987531 1122233211 0112333 4
Q ss_pred CCHHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.+++++++|+||++.... .++++++.+.+. .++.+++..+|.++
T Consensus 68 ~d~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~SNPv~ 129 (326)
T 1smk_A 68 QQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISNPVN 129 (326)
T ss_dssp HHHHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHH
T ss_pred CCHHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECCchH
Confidence 46777889999999998531 244455555554 36777777788665
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00011 Score=74.12 Aligned_cols=89 Identities=8% Similarity=0.118 Sum_probs=60.4
Q ss_pred CCCCCcCeEEEECcchHHH-HHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCe
Q 014757 56 DGVLHKSKVTVVGSGNWGS-VASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNV 132 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i 132 (419)
.+.+.++||+|||+|.||. .++..|.+... .+| .++++++++ .+.+.+. +... ..+
T Consensus 78 ~~~~~~irigiIG~G~~g~~~~~~~l~~~~~------~~lvav~d~~~~~------~~~~a~~~g~~~---------~~~ 136 (433)
T 1h6d_A 78 MPEDRRFGYAIVGLGKYALNQILPGFAGCQH------SRIEALVSGNAEK------AKIVAAEYGVDP---------RKI 136 (433)
T ss_dssp CCCCCCEEEEEECCSHHHHHTHHHHTTTCSS------EEEEEEECSCHHH------HHHHHHHTTCCG---------GGE
T ss_pred CCCCCceEEEEECCcHHHHHHHHHHHhhCCC------cEEEEEEcCCHHH------HHHHHHHhCCCc---------ccc
Confidence 4556778999999999997 88888876531 564 578877654 3444332 2110 013
Q ss_pred EecCCHHHHhc--CCCEEEEccCcchHHHHHHHHh
Q 014757 133 VADPDLENAVK--DANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 133 ~~~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~ 165 (419)
..+++.++.+. +.|+|++|+|+....+++....
T Consensus 137 ~~~~~~~~ll~~~~vD~V~iatp~~~h~~~~~~al 171 (433)
T 1h6d_A 137 YDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAF 171 (433)
T ss_dssp ECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred cccCCHHHHhcCCCCCEEEEcCCchhHHHHHHHHH
Confidence 45677877765 6899999999977766665543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=1.5e-05 Score=75.72 Aligned_cols=94 Identities=6% Similarity=0.074 Sum_probs=61.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..+++.|||+|.||.+++..|++.| . +|++++|++++ .+.+.... ......++
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G-------~~~v~v~~R~~~~------a~~la~~~-------------~~~~~~~~ 169 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIV-------RPTLTVANRTMSR------FNNWSLNI-------------NKINLSHA 169 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTC-------CSCCEEECSCGGG------GTTCCSCC-------------EEECHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-------CCEEEEEeCCHHH------HHHHHHhc-------------ccccHhhH
Confidence 3468999999999999999999999 6 89999999765 22222110 11122345
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHH-hccCCCCcEEEEeec
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRL-VGKVNGDVEAISLIK 179 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l-~~~l~~~tiivs~~n 179 (419)
++++.++|+||-|||.......-..+ ...++++++++++.-
T Consensus 170 ~~~~~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY 211 (277)
T 3don_A 170 ESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVY 211 (277)
T ss_dssp HHTGGGCSEEEECCC-------CCSSCCTTCCSSCEEEESCC
T ss_pred HHHhcCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEecC
Confidence 55577899999999974222110001 234678899999864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=8.2e-05 Score=74.70 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=65.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH-
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL- 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~- 138 (419)
..|+|.|+|.|.+|..++..|.+.| ++|++++++++. ++.+++.|....+ ++ .+++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g-------~~vvvId~d~~~------v~~~~~~g~~vi~-GD---------at~~~ 59 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSG-------VKMVVLDHDPDH------IETLRKFGMKVFY-GD---------ATRMD 59 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTT-------CCEEEEECCHHH------HHHHHHTTCCCEE-SC---------TTCHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-------CCEEEEECCHHH------HHHHHhCCCeEEE-cC---------CCCHH
Confidence 4578999999999999999999999 999999999876 6777765533211 11 1222
Q ss_pred --HHH-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 139 --ENA-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 139 --~ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+++ +.++|+||+++++......+-.....+.++..||.-++
T Consensus 60 ~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 60 LLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp HHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 222 56899999999985544433344444455645555444
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=7.3e-05 Score=76.55 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=65.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++|+|+|+|.||..+|..+...| .+|+++++++.+ .+...+.| +.. .++++
T Consensus 274 GktV~IiG~G~IG~~~A~~lka~G-------a~Viv~d~~~~~------~~~A~~~G--------------a~~-~~l~e 325 (494)
T 3ce6_A 274 GKKVLICGYGDVGKGCAEAMKGQG-------ARVSVTEIDPIN------ALQAMMEG--------------FDV-VTVEE 325 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHTT--------------CEE-CCHHH
T ss_pred cCEEEEEccCHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcC--------------CEE-ecHHH
Confidence 468999999999999999999999 899999988654 23333333 122 35667
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
++..+|+||.+++...+-. .+....++++.+++.+..+
T Consensus 326 ~l~~aDvVi~atgt~~~i~--~~~l~~mk~ggilvnvG~~ 363 (494)
T 3ce6_A 326 AIGDADIVVTATGNKDIIM--LEHIKAMKDHAILGNIGHF 363 (494)
T ss_dssp HGGGCSEEEECSSSSCSBC--HHHHHHSCTTCEEEECSSS
T ss_pred HHhCCCEEEECCCCHHHHH--HHHHHhcCCCcEEEEeCCC
Confidence 7889999999998754211 1334456788898887643
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00027 Score=68.93 Aligned_cols=97 Identities=8% Similarity=-0.018 Sum_probs=62.0
Q ss_pred CCCcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEe
Q 014757 58 VLHKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~ 134 (419)
...|+||||||+|.||.. ++..+.+... .+|. ++++++++ ++++.+. +. .++
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~------~~lvav~d~~~~~------a~~~a~~~g~-------------~~~ 74 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAEN------CVVTAIASRDLTR------AREMADRFSV-------------PHA 74 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSS------EEEEEEECSSHHH------HHHHHHHHTC-------------SEE
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCC------eEEEEEECCCHHH------HHHHHHHcCC-------------Cee
Confidence 356789999999999975 5666766531 5654 67777655 4444432 21 146
Q ss_pred cCCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 135 DPDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 135 ~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++|.++.+. +.|+|++|+|+..-.++...... .|.- |-+-|.+..
T Consensus 75 y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~---aGkh-Vl~EKPla~ 121 (350)
T 4had_A 75 FGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAAD---AGKH-VVCEKPLAL 121 (350)
T ss_dssp ESSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHH---TTCE-EEECSCCCS
T ss_pred eCCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHh---cCCE-EEEeCCccc
Confidence 788888764 58999999999766666544443 2433 344555544
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00026 Score=68.34 Aligned_cols=102 Identities=11% Similarity=0.195 Sum_probs=64.9
Q ss_pred CeEEEEC-cchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe--cCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA--DPD 137 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~--~~~ 137 (419)
|||+||| +|.+|.+++..|... +. ..++.++|+++ . .+..+-.++.. ..+..+.. +++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~-----~~el~L~Di~~-~--~~G~a~Dl~~~----------~~~~~v~~~~~~~ 62 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPS-----GSELSLYDIAP-V--TPGVAVDLSHI----------PTAVKIKGFSGED 62 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCT-----TEEEEEECSST-T--HHHHHHHHHTS----------CSSEEEEEECSSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC-----CceEEEEecCC-C--chhHHHHhhCC----------CCCceEEEecCCC
Confidence 7999999 899999999999876 42 16899999976 3 11111222221 11112332 134
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+++.++|+||++.... .++++.+.+.++ .++.+++..+|.++
T Consensus 63 ~~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvd 122 (312)
T 3hhp_A 63 ATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVN 122 (312)
T ss_dssp CHHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred cHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCcch
Confidence 445689999999997431 133444555555 46788888888554
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.50 E-value=4.7e-05 Score=72.46 Aligned_cols=97 Identities=9% Similarity=0.108 Sum_probs=62.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+++.|+|+|.+|.+++..|++.|. .+|++++|++++ .+++++.+...+ .+... +.+
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G~------~~v~v~~R~~~~--a~~la~~~~~~~-------------~~~~~-~~~ 182 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQP------ASITVTNRTFAK--AEQLAELVAAYG-------------EVKAQ-AFE 182 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTCC------SEEEEEESSHHH--HHHHHHHHGGGS-------------CEEEE-EGG
T ss_pred cCCEEEEECchHHHHHHHHHHHhcCC------CeEEEEECCHHH--HHHHHHHhhccC-------------CeeEe-eHH
Confidence 45789999999999999999999992 389999998765 333333333211 12221 233
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHH-hccCCCCcEEEEeec
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRL-VGKVNGDVEAISLIK 179 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l-~~~l~~~tiivs~~n 179 (419)
+...++|+||-|||.....+.. .+ ...++++++++++.-
T Consensus 183 ~l~~~aDiIInaTp~gm~~~~~-~l~~~~l~~~~~V~DlvY 222 (281)
T 3o8q_A 183 QLKQSYDVIINSTSASLDGELP-AIDPVIFSSRSVCYDMMY 222 (281)
T ss_dssp GCCSCEEEEEECSCCCC----C-SCCGGGEEEEEEEEESCC
T ss_pred HhcCCCCEEEEcCcCCCCCCCC-CCCHHHhCcCCEEEEecC
Confidence 3336899999999974322210 01 124556788888863
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00031 Score=71.03 Aligned_cols=90 Identities=10% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
..|.++||+|||+|.||...+..|.+... .+| .++++++++ .+++.+.+.+.|.. ..+..
T Consensus 16 ~~~~~~rvgiIG~G~~g~~h~~~l~~~~~------~~lvav~d~~~~~--~~~~a~~~~~~g~~-----------~~~~~ 76 (444)
T 2ixa_A 16 FNPKKVRIAFIAVGLRGQTHVENMARRDD------VEIVAFADPDPYM--VGRAQEILKKNGKK-----------PAKVF 76 (444)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHTCTT------EEEEEEECSCHHH--HHHHHHHHHHTTCC-----------CCEEE
T ss_pred CCCCCceEEEEecCHHHHHHHHHHHhCCC------cEEEEEEeCCHHH--HHHHHHHHHhcCCC-----------CCcee
Confidence 35667899999999999999998887531 565 577887654 12222222222210 12345
Q ss_pred C----CHHHHhc--CCCEEEEccCcchHHHHHHHHh
Q 014757 136 P----DLENAVK--DANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 136 ~----~~~ea~~--~aDlVilavp~~~~~~vl~~l~ 165 (419)
+ +.++++. +.|+|++|+|.....++.....
T Consensus 77 ~~~~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~al 112 (444)
T 2ixa_A 77 GNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAM 112 (444)
T ss_dssp CSSTTTHHHHTTCTTCCEEEECCCGGGHHHHHHHHH
T ss_pred ccCCCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH
Confidence 5 8888776 5899999999876666554443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.50 E-value=9.3e-05 Score=70.99 Aligned_cols=98 Identities=11% Similarity=0.144 Sum_probs=64.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..++|.|||+|.||.+++..|++.| . +|++++|++++ ++.+.+.-.. . . . .+....++
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G-------~~~V~v~nR~~~k------a~~la~~~~~-~-~-----~-~~~~~~~~ 198 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTA-------AERIDMANRTVEK------AERLVREGDE-R-R-----S-AYFSLAEA 198 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTT-------CSEEEEECSSHHH------HHHHHHHSCS-S-S-----C-CEECHHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCC-------CCEEEEEeCCHHH------HHHHHHHhhh-c-c-----C-ceeeHHHH
Confidence 4468999999999999999999999 5 99999998765 4555432100 0 0 0 11111245
Q ss_pred HHHhcCCCEEEEccCcchHHHH--HHHH-hccCCCCcEEEEeec
Q 014757 139 ENAVKDANMLVFVTPHQFMEGI--CKRL-VGKVNGDVEAISLIK 179 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~v--l~~l-~~~l~~~tiivs~~n 179 (419)
.+.+.++|+||.|+|....... + .+ ...++++++++++.-
T Consensus 199 ~~~~~~aDivIn~t~~~~~~~~~~~-~i~~~~l~~~~~v~D~~y 241 (297)
T 2egg_A 199 ETRLAEYDIIINTTSVGMHPRVEVQ-PLSLERLRPGVIVSDIIY 241 (297)
T ss_dssp HHTGGGCSEEEECSCTTCSSCCSCC-SSCCTTCCTTCEEEECCC
T ss_pred HhhhccCCEEEECCCCCCCCCCCCC-CCCHHHcCCCCEEEEcCC
Confidence 5567789999999997432100 0 01 234667889998864
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00031 Score=67.97 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=57.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|.++||+|||+|.||..++..+.+.+. .+ |.+++++++. + +. . ++..+++
T Consensus 1 M~~irV~IiG~G~mG~~~~~~l~~~~~------~elvav~d~~~~~----~----~~-~--------------gv~~~~d 51 (320)
T 1f06_A 1 MTNIRVAIVGYGNLGRSVEKLIAKQPD------MDLVGIFSRRATL----D----TK-T--------------PVFDVAD 51 (320)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSS------EEEEEEEESSSCC----S----SS-S--------------CEEEGGG
T ss_pred CCCCEEEEEeecHHHHHHHHHHhcCCC------CEEEEEEcCCHHH----h----hc-C--------------CCceeCC
Confidence 356899999999999999999987641 45 4578877532 0 00 0 2455677
Q ss_pred HHHHhcCCCEEEEccCcchH-HHHHHHHhccCCCCcEEEEe
Q 014757 138 LENAVKDANMLVFVTPHQFM-EGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~-~~vl~~l~~~l~~~tiivs~ 177 (419)
.++.+.++|+||+|+|+... +.+...+ ..+..++..
T Consensus 52 ~~~ll~~~DvViiatp~~~h~~~~~~al----~aG~~Vv~e 88 (320)
T 1f06_A 52 VDKHADDVDVLFLCMGSATDIPEQAPKF----AQFACTVDT 88 (320)
T ss_dssp GGGTTTTCSEEEECSCTTTHHHHHHHHH----TTTSEEECC
T ss_pred HHHHhcCCCEEEEcCCcHHHHHHHHHHH----HCCCEEEEC
Confidence 77766789999999998744 3333333 335545443
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00019 Score=69.99 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=58.1
Q ss_pred cCeEEEECcchHHHHHHHH-H-HHc-CCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGSGNWGSVASKL-I-ASN-TLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~-L-a~~-G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|+||+|||+|.||..+... + ... + .+|. ++++++++ .+...+. .+++.++
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~-------~~l~av~d~~~~~------~~~~~~~-------------~~~~~~~ 55 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDS-------WHVAHIFRRHAKP------EEQAPIY-------------SHIHFTS 55 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTT-------EEEEEEECSSCCG------GGGSGGG-------------TTCEEES
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCC-------eEEEEEEcCCHhH------HHHHHhc-------------CCCceEC
Confidence 5799999999999864333 3 332 3 5665 88888765 2111111 1245678
Q ss_pred CHHHHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.++.+.+ .|+|++|+|+....++...... .|..|+ +-|.+.
T Consensus 56 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a 99 (345)
T 3f4l_A 56 DLDEVLNDPDVKLVVVCTHADSHFEYAKRALE---AGKNVL-VEKPFT 99 (345)
T ss_dssp CTHHHHTCTTEEEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSSC
T ss_pred CHHHHhcCCCCCEEEEcCChHHHHHHHHHHHH---cCCcEE-EeCCCC
Confidence 88887765 8999999999766666544433 344443 345444
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00017 Score=71.89 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=64.0
Q ss_pred CCCcCeEEEECcch---HHHHHHHHHHHcCCCCCCCCceEE--EEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCC
Q 014757 58 VLHKSKVTVVGSGN---WGSVASKLIASNTLRLSSFHDEVR--MWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKN 131 (419)
Q Consensus 58 ~~~~mkI~IIGaG~---mG~~lA~~La~~G~~~~~~~~~V~--l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~ 131 (419)
.|.++||+|||+|. ||...+..+...+. .++. ++++++++ .+.+.+. |.. .
T Consensus 9 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~------~~lva~v~d~~~~~------a~~~a~~~g~~-----------~ 65 (398)
T 3dty_A 9 IPQPIRWAMVGGGSQSQIGYIHRCAALRDNT------FVLVAGAFDIDPIR------GSAFGEQLGVD-----------S 65 (398)
T ss_dssp SCSCEEEEEEECCTTCSSHHHHHHHHHGGGS------EEEEEEECCSSHHH------HHHHHHHTTCC-----------G
T ss_pred ccCcceEEEEcCCccchhHHHHHHHHhhCCC------eEEEEEEeCCCHHH------HHHHHHHhCCC-----------c
Confidence 36678999999999 99999988877652 4655 56777654 4444432 210 0
Q ss_pred eEecCCHHHHhc-------CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 132 VVADPDLENAVK-------DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 132 i~~~~~~~ea~~-------~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+.++|.++.+. +.|+|++|+|+....++...... .|.-| .+-|.+.
T Consensus 66 ~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhV-l~EKPla 119 (398)
T 3dty_A 66 ERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALE---AGLHV-VCEKPLC 119 (398)
T ss_dssp GGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHH---TTCEE-EECSCSC
T ss_pred ceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHH---CCCeE-EEeCCCc
Confidence 135678888765 38999999999766666555443 24433 3345444
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00029 Score=67.65 Aligned_cols=104 Identities=22% Similarity=0.213 Sum_probs=63.8
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEec--CCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVF--EETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r--~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|||+|+| +|.+|.+++..|+..+.. .++.++|+ ++++ .+.....+.... . ...+..+.. .+
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~-----~el~L~Di~~~~~~--~~~~~~dl~~~~------~-~~~~~~v~~-~~- 64 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIA-----DEVVFVDIPDKEDD--TVGQAADTNHGI------A-YDSNTRVRQ-GG- 64 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCC-----SEEEEECCGGGHHH--HHHHHHHHHHHH------T-TTCCCEEEE-CC-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-----CEEEEEcCCCChhh--HHHHHHHHHHHH------h-hCCCcEEEe-CC-
Confidence 7999999 999999999999988721 36889998 5432 011111222210 0 001112333 34
Q ss_pred HHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++++++|+||++.... .++++++.+..+ .++.+++..+|.++
T Consensus 65 ~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNPv~ 123 (303)
T 1o6z_A 65 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVD 123 (303)
T ss_dssp GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSHH
T ss_pred HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCChHH
Confidence 45689999999998531 244455555554 56778877888554
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00033 Score=68.49 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=60.0
Q ss_pred CCCcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 58 VLHKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
++.++||+|||+|.||.. .+..+.+... .+|. ++++++++ .++.. ..++.+
T Consensus 4 M~~~~rvgiiG~G~~g~~~~~~~~~~~~~------~~l~av~d~~~~~---------~~~~~------------~~~~~~ 56 (352)
T 3kux_A 4 MADKIKVGLLGYGYASKTFHAPLIMGTPG------LELAGVSSSDASK---------VHADW------------PAIPVV 56 (352)
T ss_dssp TTCCEEEEEECCSHHHHHTHHHHHHTSTT------EEEEEEECSCHHH---------HHTTC------------SSCCEE
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhhCCC------cEEEEEECCCHHH---------HHhhC------------CCCceE
Confidence 345689999999999996 6777776531 5654 67776533 22211 123467
Q ss_pred CCHHHHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+|.++.+.+ .|+|++|+|+....++...... .|.-|+ +-|.+.
T Consensus 57 ~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhV~-~EKPla 101 (352)
T 3kux_A 57 SDPQMLFNDPSIDLIVIPTPNDTHFPLAQSALA---AGKHVV-VDKPFT 101 (352)
T ss_dssp SCHHHHHHCSSCCEEEECSCTTTHHHHHHHHHH---TTCEEE-ECSSCC
T ss_pred CCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---CCCcEE-EECCCc
Confidence 888887764 8999999998766665544433 344333 345444
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00029 Score=69.29 Aligned_cols=96 Identities=8% Similarity=0.042 Sum_probs=61.4
Q ss_pred CCCcCeEEEECcchHHH-HHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 58 VLHKSKVTVVGSGNWGS-VASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
+|.++||+|||+|.+|. .++..+...+ .+| .++++++++ ++.+.+... ..+.+
T Consensus 23 Mm~~irvgiiG~G~~~~~~~~~~~~~~~-------~~lvav~d~~~~~------a~~~a~~~~------------~~~~~ 77 (361)
T 3u3x_A 23 MMDELRFAAVGLNHNHIYGQVNCLLRAG-------ARLAGFHEKDDAL------AAEFSAVYA------------DARRI 77 (361)
T ss_dssp ---CCEEEEECCCSTTHHHHHHHHHHTT-------CEEEEEECSCHHH------HHHHHHHSS------------SCCEE
T ss_pred hccCcEEEEECcCHHHHHHHHHHhhcCC-------cEEEEEEcCCHHH------HHHHHHHcC------------CCccc
Confidence 46678999999999994 5677776666 674 578887655 444444210 12467
Q ss_pred CCHHHHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.++.+.+ .|+|++|+|+..-.++...... .|.-| .+-|.+.
T Consensus 78 ~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~---aGkhV-l~EKPla 122 (361)
T 3u3x_A 78 ATAEEILEDENIGLIVSAAVSSERAELAIRAMQ---HGKDV-LVDKPGM 122 (361)
T ss_dssp SCHHHHHTCTTCCEEEECCCHHHHHHHHHHHHH---TTCEE-EEESCSC
T ss_pred CCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---CCCeE-EEeCCCC
Confidence 888887764 8999999999766666544433 34333 3455444
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.001 Score=63.18 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=88.4
Q ss_pred CCCCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe
Q 014757 57 GVLHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 57 ~~~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
.++.++||+|+| +|.||..++..+.+... .++ -+++|+.....++++- .+. |. . +.++.+
T Consensus 17 ~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~------~eLvg~vd~~~~~~~G~d~g-el~--G~--------~-~~gv~v 78 (288)
T 3ijp_A 17 QGPGSMRLTVVGANGRMGRELITAIQRRKD------VELCAVLVRKGSSFVDKDAS-ILI--GS--------D-FLGVRI 78 (288)
T ss_dssp ----CEEEEESSTTSHHHHHHHHHHHTCSS------EEEEEEBCCTTCTTTTSBGG-GGT--TC--------S-CCSCBC
T ss_pred hccCCeEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecCCccccccchH-Hhh--cc--------C-cCCcee
Confidence 455667999999 89999999999886631 453 4566654220111110 110 10 0 124567
Q ss_pred cCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHH
Q 014757 135 DPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANE 214 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e 214 (419)
++|+++++.++|+||-++++....+.+..... .+.-+|..+.|+..+ .. +.+++.. ....++..|++..-
T Consensus 79 ~~dl~~ll~~aDVvIDFT~p~a~~~~~~~~l~---~Gv~vViGTTG~~~e-----~~-~~L~~aa-~~~~~~~a~N~SiG 148 (288)
T 3ijp_A 79 TDDPESAFSNTEGILDFSQPQASVLYANYAAQ---KSLIHIIGTTGFSKT-----EE-AQIADFA-KYTTIVKSGNMSLG 148 (288)
T ss_dssp BSCHHHHTTSCSEEEECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHH-----HH-HHHHHHH-TTSEEEECSCCCHH
T ss_pred eCCHHHHhcCCCEEEEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHH-----HH-HHHHHHh-CcCCEEEECCCcHH
Confidence 88999888899999988887666555544433 467788878787531 11 2333332 23466777776431
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAV 251 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~ 251 (419)
+. . -...++...+.|. .++.+++.
T Consensus 149 v~--l----------l~~l~~~aa~~l~-~~~dieIi 172 (288)
T 3ijp_A 149 VN--L----------LANLVKRAAKALD-DDFDIEIY 172 (288)
T ss_dssp HH--H----------HHHHHHHHHHHSC-TTSEEEEE
T ss_pred HH--H----------HHHHHHHHHHhcC-CCCCEEEE
Confidence 10 0 1244566677776 35666553
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00016 Score=66.02 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=52.4
Q ss_pred cCeEEEECcchHHHHHHHH--HHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKL--IASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~--La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.++|+|||+|.+|..++.. +...| ++ |-++|.++++ .... ..+. .+...++
T Consensus 85 ~~rV~IIGAG~~G~~La~~~~~~~~g-------~~iVg~~D~dp~k------~g~~---------i~gv----~V~~~~d 138 (215)
T 2vt3_A 85 MTDVILIGVGNLGTAFLHYNFTKNNN-------TKISMAFDINESK------IGTE---------VGGV----PVYNLDD 138 (215)
T ss_dssp --CEEEECCSHHHHHHHHCC-------------CCEEEEEESCTTT------TTCE---------ETTE----EEEEGGG
T ss_pred CCEEEEEccCHHHHHHHHHHhcccCC-------cEEEEEEeCCHHH------HHhH---------hcCC----eeechhh
Confidence 3689999999999999994 33445 44 5688888765 1100 0011 2334667
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+++.+++.|+|++|+|+....++.+.+..
T Consensus 139 l~eli~~~D~ViIAvPs~~~~ei~~~l~~ 167 (215)
T 2vt3_A 139 LEQHVKDESVAILTVPAVAAQSITDRLVA 167 (215)
T ss_dssp HHHHCSSCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEecCchhHHHHHHHHHH
Confidence 77777666999999999877788777654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.41 E-value=6.5e-05 Score=76.56 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=58.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEe-cCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVA-DPD 137 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~-~~~ 137 (419)
+.|||.|+|+|.+|..+|..|.+.| |+|++++++++. ++.+.+. +... +.. .++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~-------~~v~vId~d~~~------~~~~~~~~~~~~-----------i~Gd~~~ 57 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGEN-------NDITIVDKDGDR------LRELQDKYDLRV-----------VNGHASH 57 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTT-------EEEEEEESCHHH------HHHHHHHSSCEE-----------EESCTTC
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCC-------CCEEEEECCHHH------HHHHHHhcCcEE-----------EEEcCCC
Confidence 5699999999999999999999999 999999998765 5666542 1100 111 122
Q ss_pred ---HHHH-hcCCCEEEEccCcchHHHHHHHHhcc
Q 014757 138 ---LENA-VKDANMLVFVTPHQFMEGICKRLVGK 167 (419)
Q Consensus 138 ---~~ea-~~~aDlVilavp~~~~~~vl~~l~~~ 167 (419)
++++ +++||++|.+|.+....-+.-.+++.
T Consensus 58 ~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~ 91 (461)
T 4g65_A 58 PDVLHEAGAQDADMLVAVTNTDETNMAACQVAFT 91 (461)
T ss_dssp HHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHH
Confidence 2333 57899999988886555444444443
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00023 Score=70.70 Aligned_cols=81 Identities=11% Similarity=0.164 Sum_probs=56.8
Q ss_pred cCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
++||+|||+| .||..++..|.+... .+| .++++++++ .+.+.+.. ++..++|.
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~------~~l~av~d~~~~~------~~~~a~~~-------------g~~~~~~~ 56 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPD------AQIVAACDPNEDV------RERFGKEY-------------GIPVFATL 56 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTT------EEEEEEECSCHHH------HHHHHHHH-------------TCCEESSH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCC------eEEEEEEeCCHHH------HHHHHHHc-------------CCCeECCH
Confidence 5799999999 999999999987641 454 477777654 34443321 13356788
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014757 139 ENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
++++. +.|+|++|+|+....+++.....
T Consensus 57 ~ell~~~~vD~V~i~tp~~~H~~~~~~al~ 86 (387)
T 3moi_A 57 AEMMQHVQMDAVYIASPHQFHCEHVVQASE 86 (387)
T ss_dssp HHHHHHSCCSEEEECSCGGGHHHHHHHHHH
T ss_pred HHHHcCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence 88765 59999999999766666554443
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00012 Score=73.29 Aligned_cols=89 Identities=9% Similarity=0.107 Sum_probs=63.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++|+|+|+|.+|..+|..|...| .+|.++++++.. .......| .. ..++++
T Consensus 220 GktV~ViG~G~IGk~vA~~Lra~G-------a~Viv~D~dp~r------a~~A~~~G--------------~~-v~~Lee 271 (435)
T 3gvp_A 220 GKQVVVCGYGEVGKGCCAALKAMG-------SIVYVTEIDPIC------ALQACMDG--------------FR-LVKLNE 271 (435)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHTT--------------CE-ECCHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC-------CEEEEEeCChhh------hHHHHHcC--------------CE-eccHHH
Confidence 368999999999999999999999 899999987632 11111222 12 246788
Q ss_pred HhcCCCEEEEccCcchHHHHH-HHHhccCCCCcEEEEeecC
Q 014757 141 AVKDANMLVFVTPHQFMEGIC-KRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl-~~l~~~l~~~tiivs~~nG 180 (419)
++..+|+|++|+....+ + .+....++++.+++.+..|
T Consensus 272 al~~ADIVi~atgt~~l---I~~e~l~~MK~gailINvgrg 309 (435)
T 3gvp_A 272 VIRQVDIVITCTGNKNV---VTREHLDRMKNSCIVCNMGHS 309 (435)
T ss_dssp HTTTCSEEEECSSCSCS---BCHHHHHHSCTTEEEEECSST
T ss_pred HHhcCCEEEECCCCccc---CCHHHHHhcCCCcEEEEecCC
Confidence 89999999998543321 2 1233446788999988765
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00019 Score=73.53 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=60.4
Q ss_pred CCCCCCcCeEEEECc----chHHHHHHHHHHHc--CCCCCCCCceE-EEEecCCCCCCcchHHHHHHhc-CcCCccCCCC
Q 014757 55 DDGVLHKSKVTVVGS----GNWGSVASKLIASN--TLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRT-NENVKYLPGI 126 (419)
Q Consensus 55 ~~~~~~~mkI~IIGa----G~mG~~lA~~La~~--G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~ 126 (419)
+++.|.++||+|||+ |.||..++..|.+. + .+| .++++++++ .+.+.+. |.
T Consensus 33 ~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~-------~~lvav~d~~~~~------a~~~a~~~g~-------- 91 (479)
T 2nvw_A 33 TVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQ-------FQIVALYNPTLKS------SLQTIEQLQL-------- 91 (479)
T ss_dssp SSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTT-------EEEEEEECSCHHH------HHHHHHHTTC--------
T ss_pred CCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCC-------eEEEEEEeCCHHH------HHHHHHHcCC--------
Confidence 344567789999999 99999999999886 4 565 477877654 4444432 21
Q ss_pred ccCCCeEecCCHHHHhc--CCCEEEEccCcchHHHHHHHH
Q 014757 127 KLGKNVVADPDLENAVK--DANMLVFVTPHQFMEGICKRL 164 (419)
Q Consensus 127 ~l~~~i~~~~~~~ea~~--~aDlVilavp~~~~~~vl~~l 164 (419)
+ .++.+++.++++. +.|+|++|+|.....+++...
T Consensus 92 --~-~~~~~~d~~ell~~~~vD~V~I~tp~~~H~~~~~~a 128 (479)
T 2nvw_A 92 --K-HATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNI 128 (479)
T ss_dssp --T-TCEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHHH
T ss_pred --C-cceeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHH
Confidence 0 1346788888775 689999999986655555443
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00026 Score=71.07 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=62.3
Q ss_pred CCCcCeEEEECcch---HHHHHHHHHHHcCCCCCCCCceEE--EEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCC
Q 014757 58 VLHKSKVTVVGSGN---WGSVASKLIASNTLRLSSFHDEVR--MWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKN 131 (419)
Q Consensus 58 ~~~~mkI~IIGaG~---mG~~lA~~La~~G~~~~~~~~~V~--l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~ 131 (419)
.|.++||+|||+|. ||...+..+...+. .++. ++++++++ ++.+.+. |.. .
T Consensus 34 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~------~~lva~v~d~~~~~------a~~~a~~~g~~-----------~ 90 (417)
T 3v5n_A 34 RQKRIRLGMVGGGSGAFIGAVHRIAARLDDH------YELVAGALSSTPEK------AEASGRELGLD-----------P 90 (417)
T ss_dssp -CCCEEEEEESCC--CHHHHHHHHHHHHTSC------EEEEEEECCSSHHH------HHHHHHHHTCC-----------G
T ss_pred cCCcceEEEEcCCCchHHHHHHHHHHhhCCC------cEEEEEEeCCCHHH------HHHHHHHcCCC-----------c
Confidence 35667999999999 99998888877652 4654 56777654 3444332 210 0
Q ss_pred eEecCCHHHHhcC-------CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 132 VVADPDLENAVKD-------ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 132 i~~~~~~~ea~~~-------aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+.+++.++.+.+ .|+|++|+|.....++...... .|.-| .+-|.+.
T Consensus 91 ~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~---aGkhV-l~EKPla 144 (417)
T 3v5n_A 91 SRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLK---RGIHV-ICDKPLT 144 (417)
T ss_dssp GGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHT---TTCEE-EEESSSC
T ss_pred ccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHh---CCCeE-EEECCCc
Confidence 1356788877654 8999999999776666555433 34443 3455554
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00017 Score=72.11 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=61.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc--c-CCCe-Ee-c
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK--L-GKNV-VA-D 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~--l-~~~i-~~-~ 135 (419)
..+|+|+|+|.+|...+..+...| .+|+++|+++++ .+.+.+.|.....+.... . ..+. +. .
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~G-------a~V~v~D~~~~~------~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~ 238 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLG-------AIVRAFDTRPEV------KEQVQSMGAEFLELDFKEEAGSGDGYAKVMS 238 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCGGG------HHHHHHTTCEECCC--------CCHHHHHHS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEcCCHHH------HHHHHHcCCEEEEecccccccccccchhhcc
Confidence 468999999999999999999999 899999998765 444444332110000000 0 0000 00 0
Q ss_pred --------CCHHHHhcCCCEEEEc--cCcchHHHHH-HHHhccCCCCcEEEEee
Q 014757 136 --------PDLENAVKDANMLVFV--TPHQFMEGIC-KRLVGKVNGDVEAISLI 178 (419)
Q Consensus 136 --------~~~~ea~~~aDlVila--vp~~~~~~vl-~~l~~~l~~~tiivs~~ 178 (419)
.+.++.+.++|+||.+ +|......++ ++....++++.+||++.
T Consensus 239 ~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 239 DAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 0244566789999999 5421110111 22234467888998886
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00027 Score=70.90 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=64.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++|+|+|.|.+|..+|..+...| .+|.++++++.. .......| +.. .++++
T Consensus 247 GKTVgVIG~G~IGr~vA~~lrafG-------a~Viv~d~dp~~------a~~A~~~G--------------~~v-v~LeE 298 (464)
T 3n58_A 247 GKVAVVCGYGDVGKGSAQSLAGAG-------ARVKVTEVDPIC------ALQAAMDG--------------FEV-VTLDD 298 (464)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSHHH------HHHHHHTT--------------CEE-CCHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC-------CEEEEEeCCcch------hhHHHhcC--------------cee-ccHHH
Confidence 368999999999999999999999 899999987632 11111222 222 46778
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
++..+|+|+.++....+- -.+....++++.++|.+..|-
T Consensus 299 lL~~ADIVv~atgt~~lI--~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 299 AASTADIVVTTTGNKDVI--TIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp HGGGCSEEEECCSSSSSB--CHHHHHHSCTTEEEEECSSST
T ss_pred HHhhCCEEEECCCCcccc--CHHHHhcCCCCeEEEEcCCCC
Confidence 899999999988654320 122334467899999887653
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00056 Score=67.30 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=58.9
Q ss_pred CcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 60 HKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.++||+|||+|.||.. .+..+.+... .+|. ++++++++ + .+.. ..++.+++
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~------~~l~av~d~~~~~------~---~~~~------------~~~~~~~~ 58 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPG------LNLAFVASRDEEK------V---KRDL------------PDVTVIAS 58 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTT------EEEEEEECSCHHH------H---HHHC------------TTSEEESC
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCC------eEEEEEEcCCHHH------H---HhhC------------CCCcEECC
Confidence 4579999999999996 6666766521 5654 67776532 2 2211 02456788
Q ss_pred HHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++.+. +.|+|++|+|+....++...... .|.-|+ +-|.+.
T Consensus 59 ~~~ll~~~~~D~V~i~tp~~~H~~~~~~al~---aGk~Vl-~EKPla 101 (364)
T 3e82_A 59 PEAAVQHPDVDLVVIASPNATHAPLARLALN---AGKHVV-VDKPFT 101 (364)
T ss_dssp HHHHHTCTTCSEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSCSC
T ss_pred HHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---CCCcEE-EeCCCc
Confidence 988876 68999999999766665544433 344443 355444
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00049 Score=67.02 Aligned_cols=99 Identities=10% Similarity=0.067 Sum_probs=63.6
Q ss_pred CCCCCcCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCe
Q 014757 56 DGVLHKSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNV 132 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i 132 (419)
+-...++||+|||+| .||...+..|.+.+- ..++ .++++++++ ++.+.+. +. .
T Consensus 13 ~~~~~~irvgiIG~G~~~g~~~~~~l~~~~~-----~~~lvav~d~~~~~------~~~~a~~~~~-------------~ 68 (340)
T 1zh8_A 13 MKPLRKIRLGIVGCGIAARELHLPALKNLSH-----LFEITAVTSRTRSH------AEEFAKMVGN-------------P 68 (340)
T ss_dssp ---CCCEEEEEECCSHHHHHTHHHHHHTTTT-----TEEEEEEECSSHHH------HHHHHHHHSS-------------C
T ss_pred cCCCCceeEEEEecCHHHHHHHHHHHHhCCC-----ceEEEEEEcCCHHH------HHHHHHHhCC-------------C
Confidence 334556799999999 899999999987620 1454 577887654 3444332 21 1
Q ss_pred EecCCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 133 VADPDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 133 ~~~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.++|.++.+. +.|+|++|+|+....++...... .|.-| .+-|.+.
T Consensus 69 ~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhV-l~EKPla 116 (340)
T 1zh8_A 69 AVFDSYEELLESGLVDAVDLTLPVELNLPFIEKALR---KGVHV-ICEKPIS 116 (340)
T ss_dssp EEESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHHH---TTCEE-EEESSSS
T ss_pred cccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHH---CCCcE-EEeCCCC
Confidence 46788888765 58999999999766666554433 34433 3345444
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00013 Score=72.37 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=64.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
...++|+|+|+|.+|..++..+...| .+|++++|++++ .+.+.+ .|.... . ......+
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~G-------a~V~~~d~~~~~------l~~~~~~~g~~~~------~--~~~~~~~ 224 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMG-------ATVTVLDINIDK------LRQLDAEFCGRIH------T--RYSSAYE 224 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCHHH------HHHHHHHTTTSSE------E--EECCHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEeCCHHH------HHHHHHhcCCeeE------e--ccCCHHH
Confidence 44579999999999999999999999 899999998654 344443 221100 0 0000123
Q ss_pred HHHHhcCCCEEEEccCcch--HHHH-HHHHhccCCCCcEEEEee
Q 014757 138 LENAVKDANMLVFVTPHQF--MEGI-CKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~--~~~v-l~~l~~~l~~~tiivs~~ 178 (419)
.++.+.++|+||.|++... ...+ .++..+.++++.++|.+.
T Consensus 225 l~~~l~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 225 LEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp HHHHHHHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred HHHHHcCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 4556778999999885422 1111 233345567888888775
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00065 Score=63.33 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=31.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.++|.|||+|.+|+.++..|++.|. .+++++|++.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv------~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGV------GNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC------SEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCC------CeEEEEcCCC
Confidence 3689999999999999999999993 4899999986
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00048 Score=68.36 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=63.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCc--cCC---------CCc-
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVK--YLP---------GIK- 127 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~--~~~---------~~~- 127 (419)
...+|+|+|+|.+|...+..+...| .+|+++++++++ .+.+.+.|.... ... +..
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G-------a~V~~~d~~~~~------~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~ 237 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG-------AVVMATDVRAAT------KEQVESLGGKFITVDDEAMKTAETAGGYAK 237 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCSTT------HHHHHHTTCEECCC----------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHcCCeEEeecccccccccccccchh
Confidence 3468999999999999999999999 789999998876 444444332110 000 000
Q ss_pred -cCCCe--EecCCHHHHhcCCCEEEEcc--CcchHHHH-HHHHhccCCCCcEEEEee
Q 014757 128 -LGKNV--VADPDLENAVKDANMLVFVT--PHQFMEGI-CKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 128 -l~~~i--~~~~~~~ea~~~aDlVilav--p~~~~~~v-l~~l~~~l~~~tiivs~~ 178 (419)
+.... ......++.+.++|+||.|+ |......+ .++....++++.+|+++.
T Consensus 238 ~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 238 EMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp -------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred hcCHHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 00000 00011455677899999999 42111111 123334567888998875
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00034 Score=66.55 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=66.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec--CC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD--PD 137 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~--~~ 137 (419)
..+++.|+|+|.+|.+++..|++.|. .+|++++|++++ .+++++.+...+.. . .+... .+
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~G~------~~v~i~~R~~~~--a~~la~~~~~~~~~------~----~i~~~~~~~ 187 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTHGV------QKLQVADLDTSR--AQALADVINNAVGR------E----AVVGVDARG 187 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC------SEEEEECSSHHH--HHHHHHHHHHHHTS------C----CEEEECSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC------CEEEEEECCHHH--HHHHHHHHHhhcCC------c----eEEEcCHHH
Confidence 44689999999999999999999992 379999999765 34444444432110 0 12232 36
Q ss_pred HHHHhcCCCEEEEccCcchHHHH-HHHHhccCCCCcEEEEee
Q 014757 138 LENAVKDANMLVFVTPHQFMEGI-CKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~v-l~~l~~~l~~~tiivs~~ 178 (419)
+++.+.++|+||-|||....... ..--...++++++++++.
T Consensus 188 l~~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~Dlv 229 (283)
T 3jyo_A 188 IEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVV 229 (283)
T ss_dssp HHHHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECC
T ss_pred HHHHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEec
Confidence 66667889999999996211100 000123467788888875
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00096 Score=64.71 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=60.3
Q ss_pred CCCcCeEEEECcchHHH-HHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 58 VLHKSKVTVVGSGNWGS-VASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.|.++||+|||+|.||. .++..|.+... .+| .+++++++. . ++...
T Consensus 22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~------~~lvav~d~~~~~------------~--------------g~~~~ 69 (330)
T 4ew6_A 22 SMSPINLAIVGVGKIVRDQHLPSIAKNAN------FKLVATASRHGTV------------E--------------GVNSY 69 (330)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHHHHCTT------EEEEEEECSSCCC------------T--------------TSEEE
T ss_pred cCCCceEEEEecCHHHHHHHHHHHHhCCC------eEEEEEEeCChhh------------c--------------CCCcc
Confidence 46678999999999998 78888887631 564 466666432 0 23466
Q ss_pred CCHHHHhc---CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVK---DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~---~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.++.+. +.|+|++|+|.....++...... .|.-|+ +-|.+.
T Consensus 70 ~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKP~a 115 (330)
T 4ew6_A 70 TTIEAMLDAEPSIDAVSLCMPPQYRYEAAYKALV---AGKHVF-LEKPPG 115 (330)
T ss_dssp SSHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH---TTCEEE-ECSSSC
T ss_pred CCHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHH---cCCcEE-EeCCCC
Confidence 78888664 48999999998766666555443 344444 556444
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00068 Score=66.67 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=60.5
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHcCCC-CCCCCce-EEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeE
Q 014757 57 GVLHKSKVTVVGSGNWGSVASKLIASNTLR-LSSFHDE-VRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVV 133 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~G~~-~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~ 133 (419)
+.|++-||||||+|.||...+..+...... ......+ |-++++++++ ++++.+. +. .+
T Consensus 21 ~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~------a~~~a~~~g~-------------~~ 81 (393)
T 4fb5_A 21 QSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGL------AEARAGEFGF-------------EK 81 (393)
T ss_dssp ---CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TT------HHHHHHHHTC-------------SE
T ss_pred cCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHH------HHHHHHHhCC-------------Ce
Confidence 456666899999999999877766432100 0000034 4578888877 4555442 21 14
Q ss_pred ecCCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 134 ADPDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 134 ~~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++|.++.+. +.|+|++|+|+..-.++...... .|.- |-+-|.+..
T Consensus 82 ~y~d~~ell~~~~iDaV~IatP~~~H~~~a~~al~---aGkh-Vl~EKPla~ 129 (393)
T 4fb5_A 82 ATADWRALIADPEVDVVSVTTPNQFHAEMAIAALE---AGKH-VWCEKPMAP 129 (393)
T ss_dssp EESCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---TTCE-EEECSCSCS
T ss_pred ecCCHHHHhcCCCCcEEEECCChHHHHHHHHHHHh---cCCe-EEEccCCcc
Confidence 6788888765 57999999999766666544433 2333 344565543
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00095 Score=63.61 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=65.8
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..+||+|+|+ |.||...+..+.+.| ++ .++..++.+. . +. . .++++.++.
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g-------~~-~V~~V~p~~~-g----~~--~--------------~G~~vy~sl 56 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYG-------TK-MVGGVTPGKG-G----TT--H--------------LGLPVFNTV 56 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT-------CE-EEEEECTTCT-T----CE--E--------------TTEEEESSH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-------Ce-EEEEeCCCcc-c----ce--e--------------CCeeccCCH
Confidence 4579999998 999999999999888 66 3445554430 0 00 0 135677888
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++.. ++|+++++||+....+++++.... + -..+|..+.|+..
T Consensus 57 ~el~~~~~~D~viI~tP~~~~~~~~~ea~~~-G-i~~iVi~t~G~~~ 101 (288)
T 2nu8_A 57 REAVAATGATASVIYVPAPFCKDSILEAIDA-G-IKLIITITEGIPT 101 (288)
T ss_dssp HHHHHHHCCCEEEECCCGGGHHHHHHHHHHT-T-CSEEEECCCCCCH
T ss_pred HHHhhcCCCCEEEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCH
Confidence 88776 899999999999988888776652 1 2345557777753
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=74.23 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=47.6
Q ss_pred CeEEEECcchHHHHH--HHHHHHcCCCCCCCCceEEEEecCCCCCCcc-hHHHHHH-hcCcCCccCCCCccCCCeEecCC
Q 014757 62 SKVTVVGSGNWGSVA--SKLIASNTLRLSSFHDEVRMWVFEETLPSGE-KLTDVIN-RTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~l--A~~La~~G~~~~~~~~~V~l~~r~~~~~~~~-~l~~~i~-~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|||+|||+|+.|.+. ...++.... .+....+|.++|.++++++.. .+++.+. ..+ .+..+..++|
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~-l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~----------~~~~i~~t~d 69 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDE-LSREDTHIYLMDVHERRLNASYILARKYVEELN----------SPVKVVKTES 69 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTT-TCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHT----------CCCEEEEESC
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHh-cCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcC----------CCeEEEEeCC
Confidence 799999999988653 233443210 000014799999987641110 0111111 111 1235778899
Q ss_pred HHHHhcCCCEEEEcc
Q 014757 138 LENAVKDANMLVFVT 152 (419)
Q Consensus 138 ~~ea~~~aDlVilav 152 (419)
.++++++||+||++.
T Consensus 70 ~~eAl~gAD~Vi~~~ 84 (477)
T 3u95_A 70 LDEAIEGADFIINTA 84 (477)
T ss_dssp HHHHHTTCSEEEECC
T ss_pred HHHHhCCCCEEEECc
Confidence 999999999999986
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.001 Score=64.00 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=62.8
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+|+||+|||+ |.||...+..+.+.+ .+ |.++++++++ . ...+. + ..++..++
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~-------~~lvav~d~~~~~------~-~~~~~------~------~~~~~~~~ 55 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEVG-------GVLVASLDPATNV------G-LVDSF------F------PEAEFFTE 55 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHTT-------CEEEEEECSSCCC------G-GGGGT------C------TTCEEESC
T ss_pred CceEEEEECCChHHHHHHHHHHHhCC-------CEEEEEEcCCHHH------H-HHHhh------C------CCCceeCC
Confidence 4789999999 789999999999887 45 5678887764 1 11211 0 12456778
Q ss_pred HHHHh----------cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 138 LENAV----------KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 138 ~~ea~----------~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
.++.+ .+.|+|++|+|+....++...... .|.-|+ +-|.+..
T Consensus 56 ~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~---aGkhVl-~EKPla~ 107 (312)
T 3o9z_A 56 PEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALR---LGANAL-SEKPLVL 107 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSSCS
T ss_pred HHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHH---CCCeEE-EECCCCC
Confidence 77765 578999999999776666655443 344433 5555543
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00063 Score=64.17 Aligned_cols=90 Identities=11% Similarity=-0.000 Sum_probs=60.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+++.|||+|.||.+++..|++.| .+|++++|++++ ++.+.+.+. ... +.++
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G-------~~v~V~nRt~~k------a~~la~~~~--------------~~~-~~~~ 169 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQG-------LQVSVLNRSSRG------LDFFQRLGC--------------DCF-MEPP 169 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCTT------HHHHHHHTC--------------EEE-SSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCHHH------HHHHHHCCC--------------eEe-cHHH
Confidence 468999999999999999999999 899999999987 555543221 111 1222
Q ss_pred HhcCCCEEEEccCcchHH-HHH--HHHhccCCCCcEEEEeec
Q 014757 141 AVKDANMLVFVTPHQFME-GIC--KRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~-~vl--~~l~~~l~~~tiivs~~n 179 (419)
+.++|+||-|||..... ..+ +.+...++++++++++.-
T Consensus 170 -l~~~DiVInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY 210 (269)
T 3phh_A 170 -KSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAY 210 (269)
T ss_dssp -SSCCSEEEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCC
T ss_pred -hccCCEEEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCC
Confidence 23899999999963100 001 111223446789999864
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0011 Score=64.78 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=58.6
Q ss_pred cCeEEEECcchHHH-HHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSGNWGS-VASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|+||+|||+|.||. ..+..+.+... .+|. +++++ . .+++.+..... +++.+++.
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~------~~l~av~d~~--~--~~~~a~~~~~~--------------~~~~~~~~ 57 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRET------LEVKTIFDLH--V--NEKAAAPFKEK--------------GVNFTADL 57 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTT------EEEEEEECTT--C--CHHHHHHHHTT--------------TCEEESCT
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCC------eEEEEEECCC--H--HHHHHHhhCCC--------------CCeEECCH
Confidence 46999999999998 56666655421 5654 77776 2 22222222111 24567888
Q ss_pred HHHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.+.+ .|+|++|+|+....++...... .|.-|+ +-|.+.
T Consensus 58 ~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a 99 (349)
T 3i23_A 58 NELLTDPEIELITICTPAHTHYDLAKQAIL---AGKSVI-VEKPFC 99 (349)
T ss_dssp HHHHSCTTCCEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSCSC
T ss_pred HHHhcCCCCCEEEEeCCcHHHHHHHHHHHH---cCCEEE-EECCCc
Confidence 887764 8999999999766666554433 344333 345444
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00024 Score=67.04 Aligned_cols=95 Identities=7% Similarity=0.093 Sum_probs=61.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..+++.|+|+|.||.+++..|++.| .+|++++|++++ .+.+.+. +.. . .+.. .+.
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G-------~~V~v~~R~~~~------~~~la~~~~~~----~------~~~~-~~~ 173 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLD-------CAVTITNRTVSR------AEELAKLFAHT----G------SIQA-LSM 173 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSHHH------HHHHHHHTGGG----S------SEEE-CCS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-------CEEEEEECCHHH------HHHHHHHhhcc----C------CeeE-ecH
Confidence 3468999999999999999999999 899999998755 3334321 100 0 1112 222
Q ss_pred HHHh-cCCCEEEEccCcchHHHHHHHHh-ccCCCCcEEEEeec
Q 014757 139 ENAV-KDANMLVFVTPHQFMEGICKRLV-GKVNGDVEAISLIK 179 (419)
Q Consensus 139 ~ea~-~~aDlVilavp~~~~~~vl~~l~-~~l~~~tiivs~~n 179 (419)
++.. ..+|+||.+++......+ ..+. ..++++.+++++.-
T Consensus 174 ~~~~~~~~DivVn~t~~~~~~~~-~~i~~~~l~~~~~v~D~~y 215 (271)
T 1nyt_A 174 DELEGHEFDLIINATSSGISGDI-PAIPSSLIHPGIYCYDMFY 215 (271)
T ss_dssp GGGTTCCCSEEEECCSCGGGTCC-CCCCGGGCCTTCEEEESCC
T ss_pred HHhccCCCCEEEECCCCCCCCCC-CCCCHHHcCCCCEEEEecc
Confidence 3322 489999999997432211 0111 23567788888753
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=65.88 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=59.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~ 138 (419)
..++|.|+|+|.+|..++..|.+.| + |++++++++. ++.+. .+... +.. .+++
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g-------~-v~vid~~~~~------~~~~~-~~~~~-----------i~gd~~~~ 61 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSE-------V-FVLAEDENVR------KKVLR-SGANF-----------VHGDPTRV 61 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSE-------E-EEEESCGGGH------HHHHH-TTCEE-----------EESCTTCH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCC-------e-EEEEECCHHH------HHHHh-cCCeE-----------EEcCCCCH
Confidence 3468999999999999999999999 9 9999998765 45554 33211 011 1222
Q ss_pred ---HHH-hcCCCEEEEccCcchHHHHHHHHhccCCCC-cEEEEe
Q 014757 139 ---ENA-VKDANMLVFVTPHQFMEGICKRLVGKVNGD-VEAISL 177 (419)
Q Consensus 139 ---~ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~-tiivs~ 177 (419)
+++ +.++|.||+++++....-.+......+.++ .+++-+
T Consensus 62 ~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 62 SDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEA 105 (234)
T ss_dssp HHHHHTTCTTCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred HHHHhcCcchhcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence 222 678999999999865444443444445555 444444
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00052 Score=67.34 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=58.8
Q ss_pred CcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 60 HKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.++||+|||+|.||.. .+..+.+... .+|. +++++++ ...+.. + .++.+++
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~------~~l~av~d~~~~---------~~~~~~------~------~~~~~~~ 56 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDE------YQISKIMTSRTE---------EVKRDF------P------DAEVVHE 56 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTT------EEEEEEECSCHH---------HHHHHC------T------TSEEESS
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCC------eEEEEEEcCCHH---------HHHhhC------C------CCceECC
Confidence 5679999999999996 6776765521 5654 6666642 222211 0 2356788
Q ss_pred HHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++.+. +.|+|++|+|+....++...... .|.-|+ +-|.+.
T Consensus 57 ~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla 99 (358)
T 3gdo_A 57 LEEITNDPAIELVIVTTPSGLHYEHTMACIQ---AGKHVV-MEKPMT 99 (358)
T ss_dssp THHHHTCTTCCEEEECSCTTTHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred HHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---cCCeEE-EecCCc
Confidence 888776 68999999999766666554433 344443 355444
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00058 Score=67.05 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=60.1
Q ss_pred CCcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|.++||+|||+|.||.. .+..|.+... .+| .++++++++ + .+. ++ .++.++
T Consensus 3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~------~~l~av~d~~~~~------~---~~~------~~------~~~~~~ 55 (362)
T 3fhl_A 3 LEIIKTGLAAFGMSGQVFHAPFISTNPH------FELYKIVERSKEL------S---KER------YP------QASIVR 55 (362)
T ss_dssp CCCEEEEESCCSHHHHHTTHHHHHHCTT------EEEEEEECSSCCG------G---GTT------CT------TSEEES
T ss_pred CCceEEEEECCCHHHHHHHHHHHhhCCC------eEEEEEEcCCHHH------H---HHh------CC------CCceEC
Confidence 45679999999999996 6777766531 565 477777653 1 111 00 245678
Q ss_pred CHHHHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
|.++.+.+ .|+|++|+|+....++...... .|.-| .+-|.+.
T Consensus 56 ~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhV-l~EKP~a 99 (362)
T 3fhl_A 56 SFKELTEDPEIDLIVVNTPDNTHYEYAGMALE---AGKNV-VVEKPFT 99 (362)
T ss_dssp CSHHHHTCTTCCEEEECSCGGGHHHHHHHHHH---TTCEE-EEESSCC
T ss_pred CHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---CCCeE-EEecCCC
Confidence 88887765 8999999999766666544433 34333 3345444
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00036 Score=65.89 Aligned_cols=96 Identities=8% Similarity=0.062 Sum_probs=58.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++|.|+|+|.||.+++..|++.| .+|++++|++++ .+++.+.+...+ .+.. .+.+
T Consensus 118 ~~~~vlvlGaGg~g~a~a~~L~~~G-------~~v~v~~R~~~~--a~~l~~~~~~~~-------------~~~~-~~~~ 174 (272)
T 1p77_A 118 PNQHVLILGAGGATKGVLLPLLQAQ-------QNIVLANRTFSK--TKELAERFQPYG-------------NIQA-VSMD 174 (272)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTT-------CEEEEEESSHHH--HHHHHHHHGGGS-------------CEEE-EEGG
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-------CEEEEEECCHHH--HHHHHHHccccC-------------CeEE-eeHH
Confidence 3478999999999999999999999 899999999765 222333322111 1112 1233
Q ss_pred HHhc-CCCEEEEccCcchHHHHHHHHh-ccCCCCcEEEEeec
Q 014757 140 NAVK-DANMLVFVTPHQFMEGICKRLV-GKVNGDVEAISLIK 179 (419)
Q Consensus 140 ea~~-~aDlVilavp~~~~~~vl~~l~-~~l~~~tiivs~~n 179 (419)
+... ++|+||.++|......+. .+. ..+.++.+++++.-
T Consensus 175 ~~~~~~~DivIn~t~~~~~~~~~-~i~~~~l~~~~~v~D~~y 215 (272)
T 1p77_A 175 SIPLQTYDLVINATSAGLSGGTA-SVDAEILKLGSAFYDMQY 215 (272)
T ss_dssp GCCCSCCSEEEECCCC--------CCCHHHHHHCSCEEESCC
T ss_pred HhccCCCCEEEECCCCCCCCCCC-CCCHHHcCCCCEEEEeeC
Confidence 3223 799999999975432221 010 11234677777753
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0013 Score=63.49 Aligned_cols=93 Identities=10% Similarity=0.124 Sum_probs=61.8
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.|+||+|||+ |.||...+..|.+.+ .+ |.+++++++. ....+. + ...+..++
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~-------~~lvav~d~~~~~-------~~~~~~------~------~~~~~~~~ 55 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDTG-------NCLVSAYDINDSV-------GIIDSI------S------PQSEFFTE 55 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHTT-------CEEEEEECSSCCC-------GGGGGT------C------TTCEEESS
T ss_pred CceEEEEECCCcHHHHHHHHHHHhCC-------CEEEEEEcCCHHH-------HHHHhh------C------CCCcEECC
Confidence 4789999999 789999999999887 55 5678887654 112221 0 12456678
Q ss_pred HHHHh-----------cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAV-----------KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~-----------~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++.+ .+.|+|++|+|+....+....... .|.- |.+-|.+.
T Consensus 56 ~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H~~~~~~al~---aGkh-Vl~EKPla 107 (318)
T 3oa2_A 56 FEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAAGLR---LGCD-VICEKPLV 107 (318)
T ss_dssp HHHHHHHHHHHTTSTTTSCCEEEECSCGGGHHHHHHHHHH---TTCE-EEECSSCC
T ss_pred HHHHHHhhhhhhhccCCCCcEEEECCCcHHHHHHHHHHHH---CCCe-EEEECCCc
Confidence 77755 468999999999776666555443 2433 33455444
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00074 Score=67.45 Aligned_cols=103 Identities=10% Similarity=0.162 Sum_probs=63.1
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCC--ceE-EEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeE
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFH--DEV-RMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVV 133 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~--~~V-~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~ 133 (419)
|..++||||||+|.||...+..+.+.+...++.. .+| -++++++++ ++++.+. +. .+
T Consensus 23 Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~------a~~~a~~~~~-------------~~ 83 (412)
T 4gqa_A 23 MSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAM------AERHAAKLGA-------------EK 83 (412)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHH------HHHHHHHHTC-------------SE
T ss_pred ccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHH------HHHHHHHcCC-------------Ce
Confidence 4456899999999999999988877531111111 344 366777654 4444332 21 14
Q ss_pred ecCCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 134 ADPDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 134 ~~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++|.++.+. +.|+|++|+|+..-.++...... .|.- |-+-|.+..
T Consensus 84 ~y~d~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~---aGkh-Vl~EKP~a~ 131 (412)
T 4gqa_A 84 AYGDWRELVNDPQVDVVDITSPNHLHYTMAMAAIA---AGKH-VYCEKPLAV 131 (412)
T ss_dssp EESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---TTCE-EEEESCSCS
T ss_pred EECCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---cCCC-eEeecCCcC
Confidence 6788888775 58999999999766666544433 2433 345565543
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00061 Score=66.82 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=84.6
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcC-----CCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCC-CccCCC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNT-----LRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPG-IKLGKN 131 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G-----~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~-~~l~~~ 131 (419)
|.||||+|+| +|.+|..+.+.|.+.+ . .+++.+.+.+.. + +.+.....+ +.+ ..+ .
T Consensus 7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~------~ei~~l~s~~~a--g----k~~~~~~~~---l~~~~~~--~ 69 (352)
T 2nqt_A 7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGR------LRIGALTAATSA--G----STLGEHHPH---LTPLAHR--V 69 (352)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTS------EEEEEEEESSCT--T----SBGGGTCTT---CGGGTTC--B
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCcc------EEEEEEECCCcC--C----Cchhhhccc---cccccee--e
Confidence 3568999999 8999999999998765 2 567776643322 1 111110000 000 001 1
Q ss_pred eEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc--e-EEEeC
Q 014757 132 VVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS--C-CVLMG 208 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~--~-~v~~g 208 (419)
+.. .+.+ .+.++|+||+|++.....++...+ ..|..+|+++.-.-.. . .+..++.+|.+ . .+..=
T Consensus 70 ~~~-~~~~-~~~~~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa~~R~~-----~-~~~~~~~y~~~h~~~~vygl 137 (352)
T 2nqt_A 70 VEP-TEAA-VLGGHDAVFLALPHGHSAVLAQQL----SPETLIIDCGADFRLT-----D-AAVWERFYGSSHAGSWPYGL 137 (352)
T ss_dssp CEE-CCHH-HHTTCSEEEECCTTSCCHHHHHHS----CTTSEEEECSSTTTCS-----C-HHHHHHHHSSCCCCCCCBSC
T ss_pred ecc-CCHH-HhcCCCEEEECCCCcchHHHHHHH----hCCCEEEEECCCccCC-----c-chhhhhhccccCCCCeeEEe
Confidence 111 2343 366899999999987766665554 3578899988643221 1 13344555532 1 13333
Q ss_pred cch--HHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE
Q 014757 209 ANI--ANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM 247 (419)
Q Consensus 209 p~~--a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~ 247 (419)
|.. -.+...........++. .....-.+.++.+..++.
T Consensus 138 PEv~~n~~~i~~~~iIanPgC~-tt~~~lal~PL~~~~~i~ 177 (352)
T 2nqt_A 138 PELPGARDQLRGTRRIAVPGCY-PTAALLALFPALAADLIE 177 (352)
T ss_dssp TTSTTHHHHHTTCSEEECCCHH-HHHHHHHHHHHHHTTCSC
T ss_pred cccccCHHHHhcCCEEEcCCHH-HHHHHHHHHHHHHcCCCc
Confidence 443 22222222111122222 345566677777765554
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00028 Score=69.72 Aligned_cols=100 Identities=11% Similarity=0.187 Sum_probs=62.8
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~ 136 (419)
....++|+|+|+|.+|..++..+...| .+|++++|++++ .+.+.+ .+.... . ...-..
T Consensus 163 ~l~~~~V~ViGaG~iG~~~a~~l~~~G-------a~V~~~d~~~~~------~~~~~~~~g~~~~------~--~~~~~~ 221 (369)
T 2eez_A 163 GVAPASVVILGGGTVGTNAAKIALGMG-------AQVTILDVNHKR------LQYLDDVFGGRVI------T--LTATEA 221 (369)
T ss_dssp BBCCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCHHH------HHHHHHHTTTSEE------E--EECCHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEECCHHH------HHHHHHhcCceEE------E--ecCCHH
Confidence 344579999999999999999999999 899999998654 344433 221100 0 000112
Q ss_pred CHHHHhcCCCEEEEccCcch--HHH-HHHHHhccCCCCcEEEEee
Q 014757 137 DLENAVKDANMLVFVTPHQF--MEG-ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~--~~~-vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.+.++|+||.|++... ... +.+...+.++++..||.+.
T Consensus 222 ~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 222 NIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp HHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred HHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 34456778999999998542 111 1234445567777777664
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00031 Score=70.25 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=61.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHh-cCcCCccCCCCccCCCeEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINR-TNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..++|+|||+|.||..++..|...| . +|++++|++++ .+.+.+ .|.. +....+
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G-------~~~V~v~~r~~~r------a~~la~~~g~~------------~~~~~~ 220 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRG-------VRAVLVANRTYER------AVELARDLGGE------------AVRFDE 220 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHC-------CSEEEEECSSHHH------HHHHHHHHTCE------------ECCGGG
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCC-------CCEEEEEeCCHHH------HHHHHHHcCCc------------eecHHh
Confidence 3468999999999999999999999 6 89999998654 323322 2211 001235
Q ss_pred HHHHhcCCCEEEEccCcch-H--HHHHHH-H-hccCCCCcEEEEeec
Q 014757 138 LENAVKDANMLVFVTPHQF-M--EGICKR-L-VGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~-~--~~vl~~-l-~~~l~~~tiivs~~n 179 (419)
+.+.+.++|+||.|++... + .+.++. + ...-+++.+++++..
T Consensus 221 l~~~l~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~ 267 (404)
T 1gpj_A 221 LVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN 267 (404)
T ss_dssp HHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred HHHHhcCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC
Confidence 5666789999999998632 2 133443 2 111123456666654
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0017 Score=63.18 Aligned_cols=102 Identities=15% Similarity=0.282 Sum_probs=62.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCC-CCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC--
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE-TLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP-- 136 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~-~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~-- 136 (419)
|+||+|+| +|.+|..+...|.+... .++..+..++ ....++.+.+.... +.+. ..+.+..
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~------~el~~l~s~~~~~saGk~~~~~~p~-------~~~~---~~~~v~~~~ 67 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPH------MNITALTVSAQSNDAGKLISDLHPQ-------LKGI---VELPLQPMS 67 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTT------EEEEEEEEETTCTTTTSBHHHHCGG-------GTTT---CCCBEEEES
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCC------CcEEEEEecCchhhcCCchHHhCcc-------ccCc---cceeEeccC
Confidence 58999999 59999999999988541 6776655433 11012332221110 0010 0111221
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+.++...++|+||+|+|...-.+....+.. .|..+|+++.-.
T Consensus 68 ~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~g~~vIDlSa~f 109 (337)
T 3dr3_A 68 DISEFSPGVDVVFLATAHEVSHDLAPQFLE---AGCVVFDLSGAF 109 (337)
T ss_dssp SGGGTCTTCSEEEECSCHHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred CHHHHhcCCCEEEECCChHHHHHHHHHHHH---CCCEEEEcCCcc
Confidence 444433789999999999877777766543 578899988643
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00079 Score=68.58 Aligned_cols=103 Identities=18% Similarity=0.290 Sum_probs=59.5
Q ss_pred CCCCCCCCcCeEEEECcchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCC
Q 014757 53 GSDDGVLHKSKVTVVGSGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKN 131 (419)
Q Consensus 53 ~~~~~~~~~mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~ 131 (419)
.+-.....+++|.|+|+|.+|.+++..|++. | ++|++++|++++ ++.+.+.. .... ..+ .
T Consensus 15 ~~~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g-------~~V~v~~R~~~k------a~~la~~~-~~~~---~~~--D 75 (467)
T 2axq_A 15 GHIEGRHMGKNVLLLGSGFVAQPVIDTLAANDD-------INVTVACRTLAN------AQALAKPS-GSKA---ISL--D 75 (467)
T ss_dssp --------CEEEEEECCSTTHHHHHHHHHTSTT-------EEEEEEESSHHH------HHHHHGGG-TCEE---EEC--C
T ss_pred CccccCCCCCEEEEECChHHHHHHHHHHHhCCC-------CeEEEEECCHHH------HHHHHHhc-CCcE---EEE--e
Confidence 3333455667999999999999999999998 5 799999998765 45554321 0000 000 0
Q ss_pred eEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 132 VVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+.-..++.+++.++|+||.|+|......+.+.. +..+..+++.
T Consensus 76 ~~d~~~l~~~l~~~DvVIn~tp~~~~~~v~~a~---l~~g~~vvd~ 118 (467)
T 2axq_A 76 VTDDSALDKVLADNDVVISLIPYTFHPNVVKSA---IRTKTDVVTS 118 (467)
T ss_dssp TTCHHHHHHHHHTSSEEEECSCGGGHHHHHHHH---HHHTCEEEEC
T ss_pred cCCHHHHHHHHcCCCEEEECCchhhhHHHHHHH---HhcCCEEEEe
Confidence 000113345567899999999986443333222 2234555554
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0012 Score=65.04 Aligned_cols=113 Identities=11% Similarity=0.092 Sum_probs=66.4
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHH--HHHhcCcCCccCCCCccCCCeEecC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTD--VINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~--~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
..+||+|+| +|.+|++++..|+..+...+ ..++.+++.+.+. .++.++ .+.-.+.. ..+..+++.++
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e--~~~l~L~d~d~~~--~~~~~~G~amDL~h~~------~p~~~~v~i~~ 100 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQ--DQPIALKLLGSER--SFQALEGVAMELEDSL------YPLLREVSIGI 100 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCT--TCCEEEEEECCGG--GHHHHHHHHHHHHTTT------CTTEEEEEEES
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCC--CceeEEEecCccc--hhhhhHHHHHhHHhhh------hhhcCCcEEec
Confidence 457999999 79999999999998874210 0137776655432 111111 11111110 01112355666
Q ss_pred CHHHHhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+..+++.+||+||++--. . -++++.+.+.++.+++.+++..+|.++
T Consensus 101 ~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD 162 (375)
T 7mdh_A 101 DPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN 162 (375)
T ss_dssp CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred CCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence 666679999999997532 1 133333445555467889988888654
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00085 Score=67.28 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=64.2
Q ss_pred cCeEEEECcchHHHHH--HHHHHH--cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGSGNWGSVA--SKLIAS--NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~l--A~~La~--~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+|||+|||+|.. .+. ...|+. .+.. ..+|.++|.+++++ +. +..+...-. . .. .+++.++
T Consensus 2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~----~~el~L~Di~~~~~--~~-~~~~~~~~~---~---~~--~~v~~t~ 65 (417)
T 1up7_A 2 HMRIAVIGGGSS-YTPELVKGLLDISEDVR----IDEVIFYDIDEEKQ--KI-VVDFVKRLV---K---DR--FKVLISD 65 (417)
T ss_dssp CCEEEEETTTCT-THHHHHHHHHHHTTTSC----CCEEEEECSCHHHH--HH-HHHHHHHHH---T---TS--SEEEECS
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhcccCCC----cCEEEEEeCCHHHH--HH-HHHHHHHHh---h---CC--eEEEEeC
Confidence 689999999985 222 223454 3310 16899999987541 10 111111000 0 00 2466778
Q ss_pred CHHHHhcCCCEEEEccCcc------------------------------------hHHHHHHHHhccCCCCcEEEEeecC
Q 014757 137 DLENAVKDANMLVFVTPHQ------------------------------------FMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~------------------------------------~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
|..+++++||+||++.-.. .+.++++++.++ . +.+++..||.
T Consensus 66 d~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~-~-~A~lin~TNP 143 (417)
T 1up7_A 66 TFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKT-S-NATIVNFTNP 143 (417)
T ss_dssp SHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEECSSS
T ss_pred CHHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHH-C-CEEEEEeCCh
Confidence 8877899999999999321 144566677765 4 8999999996
Q ss_pred cc
Q 014757 181 ME 182 (419)
Q Consensus 181 i~ 182 (419)
++
T Consensus 144 vd 145 (417)
T 1up7_A 144 SG 145 (417)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0014 Score=64.01 Aligned_cols=99 Identities=22% Similarity=0.241 Sum_probs=59.9
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+.|+||+|+| .|.+|..+.+.|.+... .++..+.+..+. + ..+.+.. .. +.+. ..+.. .+
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p~------~elv~v~s~~~~--g----~~~~~~~--~~-~~g~---~~~~~-~~ 62 (345)
T 2ozp_A 2 TGKKTLSIVGASGYAGGEFLRLALSHPY------LEVKQVTSRRFA--G----EPVHFVH--PN-LRGR---TNLKF-VP 62 (345)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHTCTT------EEEEEEBCSTTT--T----SBGGGTC--GG-GTTT---CCCBC-BC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHcCCC------cEEEEEECchhh--C----chhHHhC--ch-hcCc---ccccc-cc
Confidence 4468999999 69999999999987651 577766654322 1 1111100 00 1110 01112 12
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
.++ +.++|+||+|+|.....+...... ..|..+|+++.-
T Consensus 63 ~~~-~~~vDvV~~a~g~~~s~~~a~~~~---~aG~~VId~Sa~ 101 (345)
T 2ozp_A 63 PEK-LEPADILVLALPHGVFAREFDRYS---ALAPVLVDLSAD 101 (345)
T ss_dssp GGG-CCCCSEEEECCCTTHHHHTHHHHH---TTCSEEEECSST
T ss_pred hhH-hcCCCEEEEcCCcHHHHHHHHHHH---HCCCEEEEcCcc
Confidence 323 578999999999987777665554 457788888753
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00086 Score=67.05 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=60.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcC-cCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTN-ENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g-~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|+||+|+|+|.+|..++..|++.|.. ..+|.+++|++++ .+++.+.+...+ ..... +...+.-..+.+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~----~~~V~v~~r~~~~--~~~la~~l~~~~~~~~~~-----~~~D~~d~~~l~ 69 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREV----FSHITLASRTLSK--CQEIAQSIKAKGYGEIDI-----TTVDADSIEELV 69 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTT----CCEEEEEESCHHH--HHHHHHHHHHTTCCCCEE-----EECCTTCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC----ceEEEEEECCHHH--HHHHHHHhhhhcCCceEE-----EEecCCCHHHHH
Confidence 57999999999999999999998810 0189999998765 233333333211 00000 000000012234
Q ss_pred HHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++.+ +|+||.+++......+++.... .+..+++++
T Consensus 70 ~~l~~~~~DvVin~ag~~~~~~v~~a~l~---~g~~vvD~a 107 (405)
T 4ina_A 70 ALINEVKPQIVLNIALPYQDLTIMEACLR---TGVPYLDTA 107 (405)
T ss_dssp HHHHHHCCSEEEECSCGGGHHHHHHHHHH---HTCCEEESS
T ss_pred HHHHhhCCCEEEECCCcccChHHHHHHHH---hCCCEEEec
Confidence 44555 8999999998665555544322 344555543
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00055 Score=67.63 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=62.0
Q ss_pred CCcCeEEEEC-cchHHHH-HH----HHHHHcCCCCCCCCceE----------EEEecCCCCCCcchHHHHHHhcCcCCcc
Q 014757 59 LHKSKVTVVG-SGNWGSV-AS----KLIASNTLRLSSFHDEV----------RMWVFEETLPSGEKLTDVINRTNENVKY 122 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~-lA----~~La~~G~~~~~~~~~V----------~l~~r~~~~~~~~~l~~~i~~~g~~~~~ 122 (419)
+.++||+||| +|.||.. .+ ..+.+.+. ..+ .+++|++++ ++.+.+..
T Consensus 4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~------~~l~~~~~~~~~~av~~~~~~~------a~~~a~~~----- 66 (383)
T 3oqb_A 4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGG------VRLKNGDRIMPDPILVGRSAEK------VEALAKRF----- 66 (383)
T ss_dssp CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTS------EECTTSCEEEEEEEEECSSSHH------HHHHHHHT-----
T ss_pred CceeEEEEEeccchhhhhhhHHHHHHHHhhcCc------eeecCCcccceeeEEEcCCHHH------HHHHHHHh-----
Confidence 4457999999 9999998 66 66666541 222 388888765 45554321
Q ss_pred CCCCccCCCe-EecCCHHHHhcC--CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 123 LPGIKLGKNV-VADPDLENAVKD--ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 123 ~~~~~l~~~i-~~~~~~~ea~~~--aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++ +.++|.++.+.+ .|+|++|+|.....++..... ..|.-|+ +-|.+..
T Consensus 67 --------~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al---~~Gk~V~-~EKP~a~ 118 (383)
T 3oqb_A 67 --------NIARWTTDLDAALADKNDTMFFDAATTQARPGLLTQAI---NAGKHVY-CEKPIAT 118 (383)
T ss_dssp --------TCCCEESCHHHHHHCSSCCEEEECSCSSSSHHHHHHHH---TTTCEEE-ECSCSCS
T ss_pred --------CCCcccCCHHHHhcCCCCCEEEECCCchHHHHHHHHHH---HCCCeEE-EcCCCCC
Confidence 11 356888887754 899999999865555544433 3355554 5565543
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00049 Score=65.08 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=61.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...+++.|+|+|.+|.+++..|++.|. .+|++++|++++ ++++.+.-. . .++.+. +.
T Consensus 118 l~~k~~lvlGaGg~~~aia~~L~~~G~------~~v~i~~R~~~~------a~~la~~~~------~----~~~~~~-~~ 174 (272)
T 3pwz_A 118 LRNRRVLLLGAGGAVRGALLPFLQAGP------SELVIANRDMAK------ALALRNELD------H----SRLRIS-RY 174 (272)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTCC------SEEEEECSCHHH------HHHHHHHHC------C----TTEEEE-CS
T ss_pred ccCCEEEEECccHHHHHHHHHHHHcCC------CEEEEEeCCHHH------HHHHHHHhc------c----CCeeEe-eH
Confidence 345789999999999999999999992 389999998765 344433110 0 012221 12
Q ss_pred HHHh-cCCCEEEEccCcchHHHHHHHH-hccCCCCcEEEEeec
Q 014757 139 ENAV-KDANMLVFVTPHQFMEGICKRL-VGKVNGDVEAISLIK 179 (419)
Q Consensus 139 ~ea~-~~aDlVilavp~~~~~~vl~~l-~~~l~~~tiivs~~n 179 (419)
++.. .++|+||-|||........ .+ ...++++++++++.-
T Consensus 175 ~~l~~~~~DivInaTp~gm~~~~~-~i~~~~l~~~~~V~DlvY 216 (272)
T 3pwz_A 175 EALEGQSFDIVVNATSASLTADLP-PLPADVLGEAALAYELAY 216 (272)
T ss_dssp GGGTTCCCSEEEECSSGGGGTCCC-CCCGGGGTTCSEEEESSC
T ss_pred HHhcccCCCEEEECCCCCCCCCCC-CCCHHHhCcCCEEEEeec
Confidence 2211 5799999999974211100 01 134667889998853
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00065 Score=64.27 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=82.6
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
+.+|||+|+|+ |.||..++..+.+. + +++. +++++++....+++ .+ +-+.. +.++..+
T Consensus 3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~-------~elva~~d~~~~~~~g~d~----~~-------~~g~~-~~~v~~~ 63 (273)
T 1dih_A 3 DANIRVAIAGAGGRMGRQLIQAALALEG-------VQLGAALEREGSSLLGSDA----GE-------LAGAG-KTGVTVQ 63 (273)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTT-------EECCCEECCTTCTTCSCCT----TC-------SSSSS-CCSCCEE
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhCCC-------CEEEEEEecCchhhhhhhH----HH-------HcCCC-cCCceec
Confidence 34589999998 99999999988754 4 6766 67776532000000 00 00000 1123456
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHH
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEI 215 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~ 215 (419)
+++++++.++|+||-++.+....+.+..... .+.-+|.-+.|+..+ . .+.+.+. .....++..|++...+
T Consensus 64 ~dl~~~l~~~DvVIDft~p~~~~~~~~~a~~---~G~~vVigTtG~~~e-----~-~~~L~~~-a~~~~vv~a~N~siGv 133 (273)
T 1dih_A 64 SSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEA-----G-KQAIRDA-AADIAIVFAANFSVGV 133 (273)
T ss_dssp SCSTTTTTSCSEEEECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHH-----H-HHHHHHH-TTTSCEEECSCCCHHH
T ss_pred CCHHHHhcCCCEEEEcCChHHHHHHHHHHHh---CCCCEEEECCCCCHH-----H-HHHHHHh-cCCCCEEEEecCcHHH
Confidence 7777777789999956655555555544433 355666666576532 1 2333332 2223455566543211
Q ss_pred HhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc
Q 014757 216 AVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAV 251 (419)
Q Consensus 216 ~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~ 251 (419)
. . -.+.++...+.|. .++.+++.
T Consensus 134 n--~----------~~~l~~~aa~~~~-~~~dieii 156 (273)
T 1dih_A 134 N--V----------MLKLLEKAAKVMG-DYTDIEII 156 (273)
T ss_dssp H--H----------HHHHHHHHHHHHT-TTSEEEEE
T ss_pred H--H----------HHHHHHHHHHhcC-CCCCEEEE
Confidence 0 0 1245566777775 35666653
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0017 Score=63.63 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=60.8
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
++||+|+| +|.+|..+.+.|.++.. .+|..+.+++.. .++.+ +........ ...+.......+.. .+++
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~------~ev~~i~~s~~~-~g~~~-~~~~~~~~~-~~~~~~~~~~~~~~-~~~~ 77 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPM------FELTALAASERS-AGKKY-KDACYWFQD-RDIPENIKDMVVIP-TDPK 77 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSS------EEEEEEEECTTT-TTSBH-HHHSCCCCS-SCCCHHHHTCBCEE-SCTT
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCC------CEEEEEEccccc-ccccH-HHhcccccc-cccccCceeeEEEe-CCHH
Confidence 46999999 79999999999987652 677777654322 12222 211110000 00000000001111 2444
Q ss_pred HHhc-CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 140 NAVK-DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 140 ea~~-~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+... ++|+||+|+|.....+....+.. .|..||+++.
T Consensus 78 ~~~~~~~DvV~~atp~~~~~~~a~~~~~---aG~~VId~s~ 115 (354)
T 1ys4_A 78 HEEFEDVDIVFSALPSDLAKKFEPEFAK---EGKLIFSNAS 115 (354)
T ss_dssp SGGGTTCCEEEECCCHHHHHHHHHHHHH---TTCEEEECCS
T ss_pred HHhcCCCCEEEECCCchHHHHHHHHHHH---CCCEEEECCc
Confidence 4346 89999999999877776666543 4777888875
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00045 Score=69.76 Aligned_cols=82 Identities=16% Similarity=0.068 Sum_probs=57.4
Q ss_pred CcCeEEEECc----chHHHHHHHHHHHc-CCCCCCCCceE-EEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCe
Q 014757 60 HKSKVTVVGS----GNWGSVASKLIASN-TLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNV 132 (419)
Q Consensus 60 ~~mkI~IIGa----G~mG~~lA~~La~~-G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i 132 (419)
.++||+|||+ |.||..++..|.+. .. .+| .++++++++ .+.+.+. +. + .+
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~------~~lvav~d~~~~~------~~~~a~~~g~----------~-~~ 75 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQ------FQITALYSPKIET------SIATIQRLKL----------S-NA 75 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTT------EEEEEEECSSHHH------HHHHHHHTTC----------T-TC
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCC------eEEEEEEeCCHHH------HHHHHHHcCC----------C-cc
Confidence 4579999999 99999999999886 31 565 578887654 4444432 21 0 13
Q ss_pred EecCCHHHHhc--CCCEEEEccCcchHHHHHHHH
Q 014757 133 VADPDLENAVK--DANMLVFVTPHQFMEGICKRL 164 (419)
Q Consensus 133 ~~~~~~~ea~~--~aDlVilavp~~~~~~vl~~l 164 (419)
+.+++.++++. +.|+|++|+|+....+++...
T Consensus 76 ~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~a 109 (438)
T 3btv_A 76 TAFPTLESFASSSTIDMIVIAIQVASHYEVVMPL 109 (438)
T ss_dssp EEESSHHHHHHCSSCSEEEECSCHHHHHHHHHHH
T ss_pred eeeCCHHHHhcCCCCCEEEEeCCcHHHHHHHHHH
Confidence 46788888775 689999999986655555443
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0012 Score=64.83 Aligned_cols=102 Identities=11% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCC-CCCCCceE-EEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEec
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLR-LSSFHDEV-RMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~-~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~ 135 (419)
|.+-||||||+|.||...+..+.+.... .-..+.+| .++++++++ ++.+.+. +. .+++
T Consensus 4 M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~------a~~~a~~~g~-------------~~~~ 64 (390)
T 4h3v_A 4 MTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEA------VRAAAGKLGW-------------STTE 64 (390)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHH------HHHHHHHHTC-------------SEEE
T ss_pred CCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHH------HHHHHHHcCC-------------Cccc
Confidence 4456899999999999988887764200 00000244 467777654 4444332 21 1467
Q ss_pred CCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 136 PDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 136 ~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+|.++.+. +.|+|++|+|+....++...... .|. -|-+-|.+..
T Consensus 65 ~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~al~---aGk-hVl~EKPla~ 110 (390)
T 4h3v_A 65 TDWRTLLERDDVQLVDVCTPGDSHAEIAIAALE---AGK-HVLCEKPLAN 110 (390)
T ss_dssp SCHHHHTTCTTCSEEEECSCGGGHHHHHHHHHH---TTC-EEEEESSSCS
T ss_pred CCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---cCC-CceeecCccc
Confidence 88888775 58999999999766666544433 243 3445565543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.002 Score=60.29 Aligned_cols=70 Identities=11% Similarity=0.048 Sum_probs=49.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.||||.|.|+|.+|+.++..|.++| ++|++++|++.. .+.+...+..... .+ .++++
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g-------~~V~~~~r~~~~------~~~~~~~~~~~~~-~D---------~~d~~ 60 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQG-------WRIIGTSRNPDQ------MEAIRASGAEPLL-WP---------GEEPS 60 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGT-------CEEEEEESCGGG------HHHHHHTTEEEEE-SS---------SSCCC
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCC-------CEEEEEEcChhh------hhhHhhCCCeEEE-ec---------ccccc
Confidence 3589999999999999999999999 999999998765 4555443321100 00 01222
Q ss_pred HHhcCCCEEEEccCc
Q 014757 140 NAVKDANMLVFVTPH 154 (419)
Q Consensus 140 ea~~~aDlVilavp~ 154 (419)
+.++|+||-+...
T Consensus 61 --~~~~d~vi~~a~~ 73 (286)
T 3ius_A 61 --LDGVTHLLISTAP 73 (286)
T ss_dssp --CTTCCEEEECCCC
T ss_pred --cCCCCEEEECCCc
Confidence 5689999998854
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0018 Score=62.73 Aligned_cols=97 Identities=15% Similarity=0.067 Sum_probs=60.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCC-CCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEE-TLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~-~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|+||+|||+|.+|..++..| ..+ .+|. ++++++ +. .+++.+..++.+. +.+.++|.
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~-------~~lvav~d~~~~~~--~~~~~~~~~~~~~------------~~~~~~~~ 59 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEE-------CSITGIAPGVPEED--LSKLEKAISEMNI------------KPKKYNNW 59 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTT-------EEEEEEECSSTTCC--CHHHHHHHHTTTC------------CCEECSSH
T ss_pred ceEEEEEccchhHHHHHHhc-CCC-------cEEEEEecCCchhh--HHHHHHHHHHcCC------------CCcccCCH
Confidence 47999999999888777766 444 5654 677776 33 2333333333221 12467888
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++.+. +.|+|++|+|...-.++...... .|.-| -+-|.+..
T Consensus 60 ~~ll~~~~vD~V~I~tp~~~H~~~~~~al~---aGkhV-l~EKPla~ 102 (337)
T 3ip3_A 60 WEMLEKEKPDILVINTVFSLNGKILLEALE---RKIHA-FVEKPIAT 102 (337)
T ss_dssp HHHHHHHCCSEEEECSSHHHHHHHHHHHHH---TTCEE-EECSSSCS
T ss_pred HHHhcCCCCCEEEEeCCcchHHHHHHHHHH---CCCcE-EEeCCCCC
Confidence 88765 58999999999766665544433 24333 35565543
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0081 Score=57.12 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=65.9
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..+||+|+|+ |.||...+..+.+.| ++ .++..++.. ..+ . . .++.+..++
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g-------~~-~v~~VnP~~-~g~----~--i--------------~G~~vy~sl 56 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYG-------TK-IVAGVTPGK-GGM----E--V--------------LGVPVYDTV 56 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT-------CE-EEEEECTTC-TTC----E--E--------------TTEEEESSH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcC-------Ce-EEEEECCCC-CCc----e--E--------------CCEEeeCCH
Confidence 4478999998 999999999999888 67 334444432 000 0 0 135677888
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+++.. ++|++++++|+....+++++.... + =..+|..+.|+..
T Consensus 57 ~el~~~~~~Dv~Ii~vp~~~~~~~~~ea~~~-G-i~~vVi~t~G~~~ 101 (288)
T 1oi7_A 57 KEAVAHHEVDASIIFVPAPAAADAALEAAHA-G-IPLIVLITEGIPT 101 (288)
T ss_dssp HHHHHHSCCSEEEECCCHHHHHHHHHHHHHT-T-CSEEEECCSCCCH
T ss_pred HHHhhcCCCCEEEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCH
Confidence 88777 899999999999988888876652 1 1335567778753
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0024 Score=62.15 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=66.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.|||+|+| +|.+|+.++..|+..+....+-+.++.++|+++.....+..+..+..... + +..++..+++..
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~-----~---~~~~~~~~~~~~ 74 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-----P---LLKDVIATDKEE 74 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-----T---TEEEEEEESCHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh-----c---ccCCEEEcCCcH
Confidence 47999999 79999999999998874211111238999986421000111122222110 0 112355666766
Q ss_pred HHhcCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++.+||+||++--. ..++++++.+.++-.++.+++..+|.++
T Consensus 75 ~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd 133 (333)
T 5mdh_A 75 IAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN 133 (333)
T ss_dssp HHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchH
Confidence 778999999997521 1244555566665433445778888554
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0045 Score=60.14 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=53.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCC-ccCCCCc--c-CCCeEec
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENV-KYLPGIK--L-GKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~-~~~~~~~--l-~~~i~~~ 135 (419)
|+||+|+|+|.||..++..|.+... .+|. +.+++++. ..+..+..|... ..+++.. + ...+.+.
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~------~elvav~d~~~~~-----~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~ 70 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDD------MELIGITKTKPDF-----EAYRAKELGIPVYAASEEFIPRFEKEGFEVA 70 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTT------EEEEEEEESSCSH-----HHHHHHHTTCCEEESSGGGHHHHHHHTCCCS
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCC------CEEEEEEcCCHHH-----HHHHHHhcCccccccccccceeccCCceEEc
Confidence 4699999999999999999987641 4554 55665443 122233322110 0000000 0 0012345
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHH
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICK 162 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~ 162 (419)
.++++.+.++|+|++|+|.....+...
T Consensus 71 ~d~~~l~~~vDvV~~aTp~~~h~~~a~ 97 (334)
T 2czc_A 71 GTLNDLLEKVDIIVDATPGGIGAKNKP 97 (334)
T ss_dssp CBHHHHHTTCSEEEECCSTTHHHHHHH
T ss_pred CcHHHhccCCCEEEECCCccccHHHHH
Confidence 677777779999999999865444443
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00089 Score=66.17 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=49.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..+.||+|||+| ||...+..+.+..- ..++ -+++|++++ ++++.+.- ++...+|
T Consensus 5 ~~~~rv~VvG~G-~g~~h~~a~~~~~~-----~~elvav~~~~~~~------a~~~a~~~-------------gv~~~~~ 59 (372)
T 4gmf_A 5 SPKQRVLIVGAK-FGEMYLNAFMQPPE-----GLELVGLLAQGSAR------SRELAHAF-------------GIPLYTS 59 (372)
T ss_dssp --CEEEEEECST-TTHHHHHTTSSCCT-----TEEEEEEECCSSHH------HHHHHHHT-------------TCCEESS
T ss_pred CCCCEEEEEehH-HHHHHHHHHHhCCC-----CeEEEEEECCCHHH------HHHHHHHh-------------CCCEECC
Confidence 346799999999 89888887766520 0454 477888765 45554421 2346678
Q ss_pred HHHHhcCCCEEEEccCcch
Q 014757 138 LENAVKDANMLVFVTPHQF 156 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~ 156 (419)
.++.+.+.|+++++||+..
T Consensus 60 ~~~l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 60 PEQITGMPDIACIVVRSTV 78 (372)
T ss_dssp GGGCCSCCSEEEECCC--C
T ss_pred HHHHhcCCCEEEEECCCcc
Confidence 8888889999999999854
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.002 Score=64.88 Aligned_cols=107 Identities=11% Similarity=0.032 Sum_probs=61.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHh-c-Cc--CCccCCCC-cc----
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINR-T-NE--NVKYLPGI-KL---- 128 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~-~-g~--~~~~~~~~-~l---- 128 (419)
+.++||+|||+|.||..++..+.+... .+| .++++++++ ++...+ . |. ......+. .+
T Consensus 21 ~k~IRVGIIGaG~iG~~~~~~l~~~~~------veLvAV~D~~~er------a~~~a~~~yG~~~~~~~~~~~~~i~~a~ 88 (446)
T 3upl_A 21 GKPIRIGLIGAGEMGTDIVTQVARMQG------IEVGALSARRLPN------TFKAIRTAYGDEENAREATTESAMTRAI 88 (446)
T ss_dssp TCCEEEEEECCSHHHHHHHHHHTTSSS------EEEEEEECSSTHH------HHHHHHHHHSSSTTEEECSSHHHHHHHH
T ss_pred CCceEEEEECChHHHHHHHHHHhhCCC------cEEEEEEeCCHHH------HHHHHHHhcCCccccccccchhhhhhhh
Confidence 445799999999999999988876421 444 467777654 333322 1 20 00000000 00
Q ss_pred -CCCeEecCCHHHHhc--CCCEEEEccCcch--HHHHHHHHhccCCCCcEEEEeecCc
Q 014757 129 -GKNVVADPDLENAVK--DANMLVFVTPHQF--MEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 129 -~~~i~~~~~~~ea~~--~aDlVilavp~~~--~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
...+.+++|.++.+. +.|+|++|+|... .+-+...+ ..|+-|+...+++
T Consensus 89 ~~g~~~v~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL----~AGKHVv~~nk~l 142 (446)
T 3upl_A 89 EAGKIAVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAI----RNGKHLVMMNVEA 142 (446)
T ss_dssp HTTCEEEESCHHHHHTCTTCCEEEECSCCHHHHHHHHHHHH----HTTCEEEECCHHH
T ss_pred ccCCceEECCHHHHhcCCCCCEEEEcCCChHHHHHHHHHHH----HcCCcEEecCccc
Confidence 113567889988776 5899999998742 33333333 3466666554433
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0023 Score=62.84 Aligned_cols=101 Identities=17% Similarity=0.268 Sum_probs=59.2
Q ss_pred CCCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+|.++||+|+| .|.+|..+.+.|.+... .++..+....+. +.++ +..- + . +.+... ..+....
T Consensus 13 ~M~~~kV~IiGAtG~iG~~llr~L~~~p~------~elvai~~~~~~--g~~~-~~~~--~-~---~~~~v~-~dl~~~~ 76 (359)
T 1xyg_A 13 PEKDIRIGLLGASGYTGAEIVRLLANHPH------FQVTLMTADRKA--GQSM-ESVF--P-H---LRAQKL-PTLVSVK 76 (359)
T ss_dssp --CCEEEEEECCSSHHHHHHHHHHHTCSS------EEEEEEBCSTTT--TSCH-HHHC--G-G---GTTSCC-CCCBCGG
T ss_pred cccCcEEEEECcCCHHHHHHHHHHHcCCC------cEEEEEeCchhc--CCCH-HHhC--c-h---hcCccc-ccceecc
Confidence 34557999999 79999999999988752 477766654332 1222 1111 0 0 011000 0111211
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
++...++|+||+|+|.....+.... + ..|..+|+++.-
T Consensus 77 --~~~~~~vDvVf~atp~~~s~~~a~~---~-~aG~~VId~sa~ 114 (359)
T 1xyg_A 77 --DADFSTVDAVFCCLPHGTTQEIIKE---L-PTALKIVDLSAD 114 (359)
T ss_dssp --GCCGGGCSEEEECCCTTTHHHHHHT---S-CTTCEEEECSST
T ss_pred --hhHhcCCCEEEEcCCchhHHHHHHH---H-hCCCEEEECCcc
Confidence 3334689999999998776555433 3 457889988753
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0048 Score=59.65 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=49.2
Q ss_pred CcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
+|+||.|||.|.+|.+ +|..|.+.| ++|+++|+.+.. ...+.+++.|.. +..-.++
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G-------~~V~~~D~~~~~----~~~~~L~~~gi~------------v~~g~~~ 59 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAG-------FEVSGCDAKMYP----PMSTQLEALGID------------VYEGFDA 59 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTT-------CEEEEEESSCCT----THHHHHHHTTCE------------EEESCCG
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCC-------CEEEEEcCCCCc----HHHHHHHhCCCE------------EECCCCH
Confidence 4689999999999995 999999999 999999987532 114566665532 2222344
Q ss_pred HHHh-cCCCEEEEc
Q 014757 139 ENAV-KDANMLVFV 151 (419)
Q Consensus 139 ~ea~-~~aDlVila 151 (419)
++.. .++|+||++
T Consensus 60 ~~l~~~~~d~vV~S 73 (326)
T 3eag_A 60 AQLDEFKADVYVIG 73 (326)
T ss_dssp GGGGSCCCSEEEEC
T ss_pred HHcCCCCCCEEEEC
Confidence 4433 479999986
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0045 Score=58.89 Aligned_cols=89 Identities=18% Similarity=0.145 Sum_probs=56.0
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHc----CCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCe
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASN----TLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNV 132 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~----G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i 132 (419)
.+.++||+|||+|.||...+..|.+. + .++. +++|+... + .. ++
T Consensus 4 ~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~-------~~lvav~d~~~~a-------~---~~--------------g~ 52 (294)
T 1lc0_A 4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAF-------LNLIGFVSRRELG-------S---LD--------------EV 52 (294)
T ss_dssp CCCSEEEEEECCSHHHHHHHHHHTSHHHHTT-------EEEEEEECSSCCC-------E---ET--------------TE
T ss_pred CCCcceEEEEEEcHHHHHHHHHHhccccCCC-------EEEEEEECchHHH-------H---Hc--------------CC
Confidence 35678999999999999999888652 2 4443 56654321 0 11 12
Q ss_pred EecCCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 133 VADPDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 133 ~~~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
. .++.++.+. +.|+|++|+|+....+....... .|.-|+ +-|.+.
T Consensus 53 ~-~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla 99 (294)
T 1lc0_A 53 R-QISLEDALRSQEIDVAYICSESSSHEDYIRQFLQ---AGKHVL-VEYPMT 99 (294)
T ss_dssp E-BCCHHHHHHCSSEEEEEECSCGGGHHHHHHHHHH---TTCEEE-EESCSC
T ss_pred C-CCCHHHHhcCCCCCEEEEeCCcHhHHHHHHHHHH---CCCcEE-EeCCCC
Confidence 3 367888765 68999999998666555544433 354443 245443
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0021 Score=63.24 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=62.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe--cCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA--DPD 137 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~--~~~ 137 (419)
...+|.|+|+|.+|...+..+...| .+|++++|++++ .+.+.+.+... . .... ..+
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~G-------a~V~v~dr~~~r------~~~~~~~~~~~-----~----~~~~~~~~~ 223 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLG-------AQVQIFDINVER------LSYLETLFGSR-----V----ELLYSNSAE 223 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCHHH------HHHHHHHHGGG-----S----EEEECCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEeCCHHH------HHHHHHhhCce-----e----EeeeCCHHH
Confidence 3479999999999999999999999 799999998765 44444332110 0 0000 123
Q ss_pred HHHHhcCCCEEEEccCcchH--HH-HHHHHhccCCCCcEEEEee
Q 014757 138 LENAVKDANMLVFVTPHQFM--EG-ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~--~~-vl~~l~~~l~~~tiivs~~ 178 (419)
..+.+.++|+||-|++.... .. +.+...+.++++..++++.
T Consensus 224 ~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 224 IETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp HHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred HHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 34456789999999975320 00 0122335567788888774
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0022 Score=61.86 Aligned_cols=102 Identities=14% Similarity=0.186 Sum_probs=62.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCC-CCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETL-PSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~-~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..+++.|+|+|.+|.+++..|++.| . +|++++|+.+. ...+++++.+..... ..+ .+...++
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~~G-------a~~V~i~nR~~~~~~~a~~la~~~~~~~~-------~~~--~~~~~~~ 216 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAALDG-------VKEISIFNRKDDFYANAEKTVEKINSKTD-------CKA--QLFDIED 216 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTT-------CSEEEEEECSSTTHHHHHHHHHHHHHHSS-------CEE--EEEETTC
T ss_pred cCCEEEEECCChHHHHHHHHHHHCC-------CCEEEEEECCCchHHHHHHHHHHhhhhcC-------Cce--EEeccch
Confidence 3468999999999999999999999 5 89999999331 013344444443210 000 0111223
Q ss_pred ---HHHHhcCCCEEEEccCcchHHH----HHHHHhccCCCCcEEEEee
Q 014757 138 ---LENAVKDANMLVFVTPHQFMEG----ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 138 ---~~ea~~~aDlVilavp~~~~~~----vl~~l~~~l~~~tiivs~~ 178 (419)
+.+.+.++|+||-|||.--... .+. ....++++.+|+++.
T Consensus 217 ~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~-~~~~l~~~~~V~Dlv 263 (315)
T 3tnl_A 217 HEQLRKEIAESVIFTNATGVGMKPFEGETLLP-SADMLRPELIVSDVV 263 (315)
T ss_dssp HHHHHHHHHTCSEEEECSSTTSTTSTTCCSCC-CGGGCCTTCEEEESC
T ss_pred HHHHHhhhcCCCEEEECccCCCCCCCCCCCCC-cHHHcCCCCEEEEec
Confidence 3345678999999999632111 010 123466788888875
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0092 Score=58.77 Aligned_cols=100 Identities=22% Similarity=0.179 Sum_probs=66.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC----CCCCC--cchHHHHHHhcCcCCccCCCCccCCCeE
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE----ETLPS--GEKLTDVINRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~----~~~~~--~~~l~~~i~~~g~~~~~~~~~~l~~~i~ 133 (419)
...||.|+|+|.+|...|+.|...|. .+|+++||+ .++.+ ....-+.+.+. .+. ..
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~------~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~-~~~-----------~~ 252 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGV------KNVVAVDRKGILNENDPETCLNEYHLEIARI-TNP-----------ER 252 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC------CEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCT-----------TC
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCC------CeEEEEECCCcccCCCcccccCHHHHHHHHh-hhc-----------cC
Confidence 44699999999999999999999993 489999998 44311 11112233321 110 11
Q ss_pred ecCCHHHHhcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 134 ADPDLENAVKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
...++++++.++|++|=++.+. -.++.++ .+.++.+|+.++|..
T Consensus 253 ~~~~L~eav~~ADVlIG~Sap~l~t~emVk----~Ma~~pIIfalSNPt 297 (388)
T 1vl6_A 253 LSGDLETALEGADFFIGVSRGNILKPEWIK----KMSRKPVIFALANPV 297 (388)
T ss_dssp CCSCHHHHHTTCSEEEECSCSSCSCHHHHT----TSCSSCEEEECCSSS
T ss_pred chhhHHHHHccCCEEEEeCCCCccCHHHHH----hcCCCCEEEEcCCCC
Confidence 2467889999999998887642 2333332 245677999999843
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0028 Score=64.16 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=50.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cC-
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DP- 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~- 136 (419)
|.+++|.|+|+|.+|.+++..|++.| ++|++++|++++ ++.+.+.- ++.. .+.. .+
T Consensus 1 M~~k~VlViGaG~iG~~ia~~L~~~G-------~~V~v~~R~~~~------a~~la~~~------~~~~---~~~~Dv~d 58 (450)
T 1ff9_A 1 MATKSVLMLGSGFVTRPTLDVLTDSG-------IKVTVACRTLES------AKKLSAGV------QHST---PISLDVND 58 (450)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHTTT-------CEEEEEESSHHH------HHHTTTTC------TTEE---EEECCTTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCc-------CEEEEEECCHHH------HHHHHHhc------CCce---EEEeecCC
Confidence 34678999999999999999999999 899999998644 33333210 0000 0001 12
Q ss_pred --CHHHHhcCCCEEEEccCcchH
Q 014757 137 --DLENAVKDANMLVFVTPHQFM 157 (419)
Q Consensus 137 --~~~ea~~~aDlVilavp~~~~ 157 (419)
+.++++.++|+||.++|....
T Consensus 59 ~~~l~~~l~~~DvVIn~a~~~~~ 81 (450)
T 1ff9_A 59 DAALDAEVAKHDLVISLIPYTFH 81 (450)
T ss_dssp HHHHHHHHTTSSEEEECCC--CH
T ss_pred HHHHHHHHcCCcEEEECCccccc
Confidence 233556789999999997543
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0012 Score=62.27 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=57.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.++|.|||+|.+|.+++..|.+.|. .+|++++|+.++ ++.+.+. +. ....+..
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~~G~------~~i~v~nRt~~k------a~~la~~~~~--------------~~~~~~~ 172 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKNSGF------EKLKIYARNVKT------GQYLAALYGY--------------AYINSLE 172 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTC------CCEEEECSCHHH------HHHHHHHHTC--------------EEESCCT
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC------CEEEEEeCCHHH------HHHHHHHcCC--------------ccchhhh
Confidence 3689999999999999999999993 489999999765 3444331 10 1112222
Q ss_pred HHhcCCCEEEEccCcchHH----HHHHHH-hccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFME----GICKRL-VGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~----~vl~~l-~~~l~~~tiivs~~ 178 (419)
..++|+||-|||..... +.. .+ ...++++++++++.
T Consensus 173 --~~~~DivInaTp~gm~~~~~~~~~-~~~~~~l~~~~~v~Dlv 213 (271)
T 1npy_A 173 --NQQADILVNVTSIGMKGGKEEMDL-AFPKAFIDNASVAFDVV 213 (271)
T ss_dssp --TCCCSEEEECSSTTCTTSTTTTSC-SSCHHHHHHCSEEEECC
T ss_pred --cccCCEEEECCCCCccCccccCCC-CCCHHHcCCCCEEEEee
Confidence 35799999999974311 000 00 01223467888876
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0027 Score=52.45 Aligned_cols=87 Identities=9% Similarity=0.020 Sum_probs=63.1
Q ss_pred CcCeEEEECc----chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 60 HKSKVTVVGS----GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 60 ~~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.+.+|+|||+ +.+|..+...|.+.| ++|+.++...+. +. +.++.
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g-------~~V~pVnP~~~~---------i~----------------G~~~y 50 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHG-------HEFIPVGRKKGE---------VL----------------GKTII 50 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHT-------CCEEEESSSCSE---------ET----------------TEECB
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCC-------CeEEEECCCCCc---------CC----------------Ceecc
Confidence 3468999997 679999999999999 888888764321 11 23455
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++.+.-. .|++++++|+..+.++++++... +... |.++.|+.
T Consensus 51 ~sl~dlp~-vDlavi~~p~~~v~~~v~e~~~~-g~k~--v~~~~G~~ 93 (122)
T 3ff4_A 51 NERPVIEG-VDTVTLYINPQNQLSEYNYILSL-KPKR--VIFNPGTE 93 (122)
T ss_dssp CSCCCCTT-CCEEEECSCHHHHGGGHHHHHHH-CCSE--EEECTTCC
T ss_pred CChHHCCC-CCEEEEEeCHHHHHHHHHHHHhc-CCCE--EEECCCCC
Confidence 56655434 89999999999999999887653 2233 34677774
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0041 Score=61.07 Aligned_cols=105 Identities=12% Similarity=0.189 Sum_probs=61.2
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC-CCccCCCeEecCC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP-GIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~-~~~l~~~i~~~~~ 137 (419)
.++||+||| +|..|.-+.+.|.+... .++..+..+... ++.+.+... ...+ ..++ +.. ...+.. .+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S~~sa--Gk~~~~~~p-~~~~-~~~~~~~~-~~~v~~-~~ 73 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAGKGSV--GKPYGEVVR-WQTV-GQVPKEIA-DMEIKP-TD 73 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEESTTT--TSBHHHHCC-CCSS-SCCCHHHH-TCBCEE-CC
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEECchhc--CCChhHhcc-cccc-cccccccc-cceEEe-CC
Confidence 457999999 69999999998876541 466655443322 233322110 0000 0001 000 001222 23
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
.+ .+.++|+||+|+|...-.+....+.. .|..+|+++.-
T Consensus 74 ~~-~~~~vDvvf~a~p~~~s~~~a~~~~~---~G~~vIDlSa~ 112 (359)
T 4dpk_A 74 PK-LMDDVDIIFSPLPQGAAGPVEEQFAK---EGFPVISNSPD 112 (359)
T ss_dssp GG-GCTTCCEEEECCCTTTHHHHHHHHHH---TTCEEEECSST
T ss_pred HH-HhcCCCEEEECCChHHHHHHHHHHHH---CCCEEEEcCCC
Confidence 33 35789999999999887777766543 58889998764
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0041 Score=61.07 Aligned_cols=105 Identities=12% Similarity=0.189 Sum_probs=61.2
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC-CCccCCCeEecCC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP-GIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~-~~~l~~~i~~~~~ 137 (419)
.++||+||| +|..|.-+.+.|.+... .++..+..+... ++.+.+... ...+ ..++ +.. ...+.. .+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S~~sa--Gk~~~~~~p-~~~~-~~~~~~~~-~~~v~~-~~ 73 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAGKGSV--GKPYGEVVR-WQTV-GQVPKEIA-DMEIKP-TD 73 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEESTTT--TSBHHHHCC-CCSS-SCCCHHHH-TCBCEE-CC
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEECchhc--CCChhHhcc-cccc-cccccccc-cceEEe-CC
Confidence 457999999 69999999998876541 466655443322 233322110 0000 0001 000 001222 23
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
.+ .+.++|+||+|+|...-.+....+.. .|..+|+++.-
T Consensus 74 ~~-~~~~vDvvf~a~p~~~s~~~a~~~~~---~G~~vIDlSa~ 112 (359)
T 4dpl_A 74 PK-LMDDVDIIFSPLPQGAAGPVEEQFAK---EGFPVISNSPD 112 (359)
T ss_dssp GG-GCTTCCEEEECCCTTTHHHHHHHHHH---TTCEEEECSST
T ss_pred HH-HhcCCCEEEECCChHHHHHHHHHHHH---CCCEEEEcCCC
Confidence 33 35789999999999887777766543 58889998764
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0073 Score=58.09 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=56.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHH-cCCCCCCCCce-EEEEecCCCCCCcchHHHHHH-hcCcCCccCCCCccCCCeEecC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDE-VRMWVFEETLPSGEKLTDVIN-RTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~-~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
.++||+|||+|.||..++..|.+ ... .+ +.+.++++++ . .+.+. +.|.. ..++
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~~~~~~------~elvav~d~~~~~-~----~~~~a~~~g~~-------------~~~~ 58 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVLRNAKY------LEMGAMVGIDAAS-D----GLARAQRMGVT-------------TTYA 58 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSS------EEEEEEECSCTTC-H----HHHHHHHTTCC-------------EESS
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhCcC------eEEEEEEeCChhh-h----HHHHHHHcCCC-------------cccC
Confidence 46799999999999999999966 320 44 3467777553 0 12222 22210 1234
Q ss_pred CHHHHh-----cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 137 DLENAV-----KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 ~~~ea~-----~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.++.+ .+.|+||+|+|.....+........ ++|..|++..
T Consensus 59 ~~e~ll~~~~~~~iDvV~~atp~~~h~~~a~~al~a-~~Gk~Vi~ek 104 (312)
T 1nvm_B 59 GVEGLIKLPEFADIDFVFDATSASAHVQNEALLRQA-KPGIRLIDLT 104 (312)
T ss_dssp HHHHHHHSGGGGGEEEEEECSCHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred CHHHHHhccCCCCCcEEEECCChHHHHHHHHHHHHh-CCCCEEEEcC
Confidence 455543 3589999999976555555444332 1366666643
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0056 Score=54.66 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=47.4
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||.|+|+ |.+|..++..|+++| ++|++++|+++. .+.+. .+.. . +...+ ++...+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~~~------~~~~~-~~~~--~-----~~~D~--~d~~~~ 57 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG-------HEVTAIVRNAGK------ITQTH-KDIN--I-----LQKDI--FDLTLS 57 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCSHH------HHHHC-SSSE--E-----EECCG--GGCCHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC-------CEEEEEEcCchh------hhhcc-CCCe--E-----Eeccc--cChhhh
Confidence 78999995 999999999999999 999999998654 33332 1111 0 00001 111114
Q ss_pred HhcCCCEEEEccCc
Q 014757 141 AVKDANMLVFVTPH 154 (419)
Q Consensus 141 a~~~aDlVilavp~ 154 (419)
++.++|+||.+...
T Consensus 58 ~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 58 DLSDQNVVVDAYGI 71 (221)
T ss_dssp HHTTCSEEEECCCS
T ss_pred hhcCCCEEEECCcC
Confidence 57889999998864
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0044 Score=57.70 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=30.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..+|.|||+|.+|+.++..|+..|. ..++++|++.
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gv------g~i~lvD~d~ 62 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGV------GTLVLADDDD 62 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTC------SEEEEECCCB
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCC------CeEEEEeCCC
Confidence 3689999999999999999999994 5899998764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0049 Score=56.04 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCc-CCccCCCCccCCCeEe
Q 014757 57 GVLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNE-NVKYLPGIKLGKNVVA 134 (419)
Q Consensus 57 ~~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~-~~~~~~~~~l~~~i~~ 134 (419)
.....|+|.|.|+ |.+|..++..|++.| ++|++.+|+++. .+.+...+. ... ...+.
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G-------~~V~~~~R~~~~------~~~~~~~~~~~~~-------~~Dl~- 75 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKG-------HEPVAMVRNEEQ------GPELRERGASDIV-------VANLE- 75 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSGGG------HHHHHHTTCSEEE-------ECCTT-
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCC-------CeEEEEECChHH------HHHHHhCCCceEE-------EcccH-
Confidence 3455689999997 999999999999999 999999998765 455554332 110 00111
Q ss_pred cCCHHHHhcCCCEEEEccCc
Q 014757 135 DPDLENAVKDANMLVFVTPH 154 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~ 154 (419)
.+..+++.++|+||.+...
T Consensus 76 -~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 76 -EDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp -SCCGGGGTTCSEEEECCCC
T ss_pred -HHHHHHHcCCCEEEECCCC
Confidence 3455667889999988764
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0066 Score=61.21 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=57.5
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHc--------CCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCcc
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASN--------TLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKL 128 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~--------G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l 128 (419)
+|.++||+|||+|.||..++..|.++ |. ..+| .+++|++++ .+.+..
T Consensus 7 MMk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~-----~i~lvaV~d~~~~~------~~~~~~------------- 62 (444)
T 3mtj_A 7 GMKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGR-----EIRVVRAAVRNLDK------AEALAG------------- 62 (444)
T ss_dssp SCSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSS-----CEEEEEEECSCHHH------HHHHHT-------------
T ss_pred hhCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCC-----CEEEEEEEECCHHH------hhhhcc-------------
Confidence 56677999999999999999887642 30 0343 355565432 222211
Q ss_pred CCCeEecCCHHHHhc--CCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeec
Q 014757 129 GKNVVADPDLENAVK--DANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 129 ~~~i~~~~~~~ea~~--~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
....++|+++.+. +.|+|++|+|. ....+..... +..|.-|++.-+
T Consensus 63 --~~~~~~d~~ell~d~diDvVve~tp~~~~h~~~~~~A---L~aGKhVvtenk 111 (444)
T 3mtj_A 63 --GLPLTTNPFDVVDDPEIDIVVELIGGLEPARELVMQA---IANGKHVVTANK 111 (444)
T ss_dssp --TCCEESCTHHHHTCTTCCEEEECCCSSTTHHHHHHHH---HHTTCEEEECCH
T ss_pred --cCcccCCHHHHhcCCCCCEEEEcCCCchHHHHHHHHH---HHcCCEEEECCc
Confidence 1235678887765 57999999996 4444443332 334666666544
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0057 Score=58.36 Aligned_cols=92 Identities=21% Similarity=0.209 Sum_probs=66.1
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+|+|+|+ |.||......+.+.| ++ .++..++.+. . +.+ .++.+..+++
T Consensus 13 ~~~v~V~Gasg~~G~~~~~~l~~~g-------~~-~V~~VnP~~~-g----~~i----------------~G~~vy~sl~ 63 (294)
T 2yv1_A 13 NTKAIVQGITGRQGSFHTKKMLECG-------TK-IVGGVTPGKG-G----QNV----------------HGVPVFDTVK 63 (294)
T ss_dssp TCCEEEETTTSHHHHHHHHHHHHTT-------CC-EEEEECTTCT-T----CEE----------------TTEEEESSHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCC-------Ce-EEEEeCCCCC-C----ceE----------------CCEeeeCCHH
Confidence 457899998 999999999999988 66 5555555430 0 000 1356778888
Q ss_pred HHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 140 NAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++.. ++|++++++|+....+++++.... + -..+|..+.|+..
T Consensus 64 el~~~~~~Dv~ii~vp~~~~~~~v~ea~~~-G-i~~vVi~t~G~~~ 107 (294)
T 2yv1_A 64 EAVKETDANASVIFVPAPFAKDAVFEAIDA-G-IELIVVITEHIPV 107 (294)
T ss_dssp HHHHHHCCCEEEECCCHHHHHHHHHHHHHT-T-CSEEEECCSCCCH
T ss_pred HHhhcCCCCEEEEccCHHHHHHHHHHHHHC-C-CCEEEEECCCCCH
Confidence 8777 899999999999998888877653 1 2335667778753
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0044 Score=60.62 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=58.8
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEe-cCCCCCCcchHHHHHHhcCcCCccCCCCccC---CCeE
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWV-FEETLPSGEKLTDVINRTNENVKYLPGIKLG---KNVV 133 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~-r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~---~~i~ 133 (419)
+.|+||+|+| +|.+|.-+.+.|.+... .++..+. .+... ++.+ +..- + . +.+..++ ..+.
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p~------~elvai~~s~~~~--g~~~-~~~~--~-~---~~~~~~~~~~~~~~ 66 (350)
T 2ep5_A 2 ADKIKVSLLGSTGMVGQKMVKMLAKHPY------LELVKVSASPSKI--GKKY-KDAV--K-W---IEQGDIPEEVQDLP 66 (350)
T ss_dssp CCCEEEEEESCSSHHHHHHHHHHTTCSS------EEEEEEECCGGGT--TSBH-HHHC--C-C---CSSSSCCHHHHTCB
T ss_pred CCCcEEEEECcCCHHHHHHHHHHHhCCC------cEEEEEecChhhc--CCCH-HHhc--C-c---ccccccccCCceeE
Confidence 4568999999 79999999999987641 5676664 22111 1111 1110 0 0 0000000 0111
Q ss_pred ec-CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 134 AD-PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 134 ~~-~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+. .++++ +.++|+||+|+|.....+....... .|..||+++.
T Consensus 67 ~~~~d~~~-~~~vDvVf~atp~~~s~~~a~~~~~---aG~~VId~s~ 109 (350)
T 2ep5_A 67 IVSTNYED-HKDVDVVLSALPNELAESIELELVK---NGKIVVSNAS 109 (350)
T ss_dssp EECSSGGG-GTTCSEEEECCCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred EeeCCHHH-hcCCCEEEECCChHHHHHHHHHHHH---CCCEEEECCc
Confidence 21 24444 5789999999998776666655543 4677888874
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0043 Score=60.42 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=57.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCC-ccCCCC--cc-CCCeEec
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENV-KYLPGI--KL-GKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~-~~~~~~--~l-~~~i~~~ 135 (419)
|+||+|+|+|.||..+++.|.+... .++. +.++++.. ........+... ..+++. .+ ..++.+.
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~~~------~elvav~d~~~~~-----~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~ 69 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQDD------MKVIGVSKTRPDF-----EARMALKKGYDLYVAIPERVKLFEKAGIEVA 69 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSSS------EEEEEEEESSCSH-----HHHHHHHTTCCEEESSGGGHHHHHHTTCCCC
T ss_pred CeEEEEEeECHHHHHHHHHHHcCCC------cEEEEEEcCChhH-----HHHhcCCcchhhccccccceeeecCCceEEc
Confidence 5799999999999999999987541 4554 35554332 112222221000 000100 00 0112222
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.++++...++|+||.|+|.....+....... .|..||+.+
T Consensus 70 ~~~~~~~~~vDvV~~atp~~~~~~~a~~~l~---aG~~VId~s 109 (337)
T 1cf2_P 70 GTVDDMLDEADIVIDCTPEGIGAKNLKMYKE---KGIKAIFQG 109 (337)
T ss_dssp EEHHHHHHTCSEEEECCSTTHHHHHHHHHHH---HTCCEEECT
T ss_pred CCHHHHhcCCCEEEECCCchhhHHHHHHHHH---cCCEEEEec
Confidence 3555656789999999998766665554433 244455443
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0049 Score=55.88 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=54.5
Q ss_pred CcCeEEEECcchHHHHHHHHH--HHcCCCCCCCCce-EEEEecCCC-CCCcchHHHHHHhcCc-CCccCCCCccCCCeEe
Q 014757 60 HKSKVTVVGSGNWGSVASKLI--ASNTLRLSSFHDE-VRMWVFEET-LPSGEKLTDVINRTNE-NVKYLPGIKLGKNVVA 134 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~L--a~~G~~~~~~~~~-V~l~~r~~~-~~~~~~l~~~i~~~g~-~~~~~~~~~l~~~i~~ 134 (419)
.+.+|+|+|+|.+|.+++..+ .+.| ++ |-++|.+++ + . |. . ..+. .+..
T Consensus 83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g-------~~iVg~~D~dp~~k------i------G~~~---i~Gv----pV~~ 136 (212)
T 3keo_A 83 STTNVMLVGCGNIGRALLHYRFHDRNK-------MQISMAFDLDSNDL------V------GKTT---EDGI----PVYG 136 (212)
T ss_dssp SCEEEEEECCSHHHHHHTTCCCCTTSS-------EEEEEEEECTTSTT------T------TCBC---TTCC----BEEE
T ss_pred CCCEEEEECcCHHHHHHHHhhhcccCC-------eEEEEEEeCCchhc------c------Ccee---ECCe----EEeC
Confidence 346899999999999998874 2334 55 567888876 5 1 11 0 0111 2334
Q ss_pred cCCHHHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014757 135 DPDLENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 135 ~~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
.+++++.++ +.|.+|+|+|+....++.+.+.+
T Consensus 137 ~~dL~~~v~~~~Id~vIIAvPs~~aq~v~d~lv~ 170 (212)
T 3keo_A 137 ISTINDHLIDSDIETAILTVPSTEAQEVADILVK 170 (212)
T ss_dssp GGGHHHHC-CCSCCEEEECSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Confidence 566777665 58999999999887788777654
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.005 Score=59.99 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=58.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCC---CCcc-CCCeEec
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLP---GIKL-GKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~---~~~l-~~~i~~~ 135 (419)
|+||+|+|+|.||..+++.|.+... .+|. +.+++++. ......+.+... +.+ +..+ ..++...
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~p~------~elvav~d~~~~~-----~~~~a~~~g~~~-~~~~~~~~~~~~~~v~v~ 68 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQPD------MKLVGVAKTSPNY-----EAFIAHRRGIRI-YVPQQSIKKFEESGIPVA 68 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTT------EEEEEEECSSCSH-----HHHHHHHTTCCE-ECCGGGHHHHHTTTCCCC
T ss_pred CeEEEEEecCHHHHHHHHHHHcCCC------CEEEEEEcCChHH-----HHHHHHhcCcce-ecCcCHHHHhcccccccc
Confidence 4699999999999999999987641 4554 44554332 112222222110 000 0000 1123344
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.+.++...++|+||.|+|.....+..+.... .+..+|+.+
T Consensus 69 ~~~e~l~~~vDvV~~aTp~~~s~~~a~~~~~---aG~kvV~~s 108 (340)
T 1b7g_O 69 GTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQ---LQRNAIFQG 108 (340)
T ss_dssp CCHHHHHHHCSEEEECCSTTHHHHHHHHHHH---TTCEEEECT
T ss_pred cCHhHhhcCCCEEEECCCCchhHHHHHHHHH---cCCeEEEeC
Confidence 5666655679999999999776666554433 355555554
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0019 Score=61.38 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=59.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+++.|+|+|.+|.+++..|.+.|. .+|++++|+.++ ++++.+.- ......++.
T Consensus 121 ~~k~vlvlGaGGaaraia~~L~~~G~------~~v~v~nRt~~k------a~~La~~~-------------~~~~~~~l~ 175 (282)
T 3fbt_A 121 KNNICVVLGSGGAARAVLQYLKDNFA------KDIYVVTRNPEK------TSEIYGEF-------------KVISYDELS 175 (282)
T ss_dssp TTSEEEEECSSTTHHHHHHHHHHTTC------SEEEEEESCHHH------HHHHCTTS-------------EEEEHHHHT
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCC------CEEEEEeCCHHH------HHHHHHhc-------------CcccHHHHH
Confidence 34689999999999999999999992 389999998765 45554310 011122333
Q ss_pred HHhcCCCEEEEccCcchHHH---H-HHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEG---I-CKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~---v-l~~l~~~l~~~tiivs~~ 178 (419)
+ + ++|+||-|||.-.... . + -...++++.+++++.
T Consensus 176 ~-l-~~DivInaTp~Gm~~~~~~~pi--~~~~l~~~~~v~Dlv 214 (282)
T 3fbt_A 176 N-L-KGDVIINCTPKGMYPKEGESPV--DKEVVAKFSSAVDLI 214 (282)
T ss_dssp T-C-CCSEEEECSSTTSTTSTTCCSS--CHHHHTTCSEEEESC
T ss_pred h-c-cCCEEEECCccCccCCCccCCC--CHHHcCCCCEEEEEe
Confidence 3 4 7999999998621110 0 1 012245678888875
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0074 Score=54.10 Aligned_cols=71 Identities=17% Similarity=0.058 Sum_probs=47.4
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||.|.|+ |.+|..++..|++.| ++|++++|+++. .+.+...+. .. +...+. ..+. +
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~~~------~~~~~~~~~--~~-----~~~D~~-d~~~-~ 58 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG-------HEVLAVVRDPQK------AADRLGATV--AT-----LVKEPL-VLTE-A 58 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH------HHHHTCTTS--EE-----EECCGG-GCCH-H
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC-------CEEEEEEecccc------cccccCCCc--eE-----Eecccc-cccH-h
Confidence 78999997 999999999999999 999999998643 333322111 10 000010 0111 4
Q ss_pred HhcCCCEEEEccCc
Q 014757 141 AVKDANMLVFVTPH 154 (419)
Q Consensus 141 a~~~aDlVilavp~ 154 (419)
++.++|+||-+...
T Consensus 59 ~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 59 DLDSVDAVVDALSV 72 (224)
T ss_dssp HHTTCSEEEECCCC
T ss_pred hcccCCEEEECCcc
Confidence 57889999988854
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0015 Score=59.42 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=53.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHc-CCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASN-TLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..++|+|||+|.+|..++..+... | ++ |-++|.++++ .... ..+. .+...++
T Consensus 79 ~~~rV~IIGaG~~G~~la~~~~~~~g-------~~iVg~~D~dp~k------~g~~---------i~gv----~V~~~~d 132 (211)
T 2dt5_A 79 RKWGLCIVGMGRLGSALADYPGFGES-------FELRGFFDVDPEK------VGRP---------VRGG----VIEHVDL 132 (211)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSS-------EEEEEEEESCTTT------TTCE---------ETTE----EEEEGGG
T ss_pred CCCEEEEECccHHHHHHHHhHhhcCC-------cEEEEEEeCCHHH------Hhhh---------hcCC----eeecHHh
Confidence 346899999999999998853221 4 55 5678887765 1100 0011 1334567
Q ss_pred HHHHhc-CCCEEEEccCcchHHHHHHHHhc
Q 014757 138 LENAVK-DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 138 ~~ea~~-~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+++.++ +.|.|++|+|+....++.+.+..
T Consensus 133 l~ell~~~ID~ViIA~Ps~~~~ei~~~l~~ 162 (211)
T 2dt5_A 133 LPQRVPGRIEIALLTVPREAAQKAADLLVA 162 (211)
T ss_dssp HHHHSTTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCchhHHHHHHHHHH
Confidence 777665 58999999999877777766654
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.008 Score=58.38 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=31.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|||+|.+|+.++..|+..|. -.++++|++.
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGV------g~ItlvD~D~ 68 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGV------RKITFVDNGT 68 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC------CEEEEECCCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC------CEEEEecCCE
Confidence 4689999999999999999999995 6899999864
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0015 Score=58.95 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=48.6
Q ss_pred cCe-EEEEC-cchHHHHHHHHHH-HcCCCCCCCCceEEEEecCCC-CCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSK-VTVVG-SGNWGSVASKLIA-SNTLRLSSFHDEVRMWVFEET-LPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mk-I~IIG-aG~mG~~lA~~La-~~G~~~~~~~~~V~l~~r~~~-~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
||| |.|.| +|.+|..++..|+ +.| ++|++++|+++ . .+.+...+..... +...+.-..
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g-------~~V~~~~r~~~~~------~~~~~~~~~~~~~-----~~~D~~d~~ 65 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTD-------MHITLYGRQLKTR------IPPEIIDHERVTV-----IEGSFQNPG 65 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCC-------CEEEEEESSHHHH------SCHHHHTSTTEEE-----EECCTTCHH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCC-------ceEEEEecCcccc------chhhccCCCceEE-----EECCCCCHH
Confidence 345 99999 5999999999999 899 99999999865 3 2233211111110 000110012
Q ss_pred CHHHHhcCCCEEEEccCcc
Q 014757 137 DLENAVKDANMLVFVTPHQ 155 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~ 155 (419)
+.++++.++|+||.+....
T Consensus 66 ~~~~~~~~~d~vv~~ag~~ 84 (221)
T 3r6d_A 66 XLEQAVTNAEVVFVGAMES 84 (221)
T ss_dssp HHHHHHTTCSEEEESCCCC
T ss_pred HHHHHHcCCCEEEEcCCCC
Confidence 2344677899999988753
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0067 Score=58.32 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=62.3
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEec--CCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC-
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVF--EETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD- 137 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r--~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~- 137 (419)
|||+|+|+ |.+|+.++..|...|.. .++.++|+ ++++ .+..+..+.... . ..+ .+..+...++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~-----~el~L~Di~~~~~~--~~~~~~dl~~~~--~-~~~---~~~~i~~~~d~ 67 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFM-----KDLVLIGREHSINK--LEGLREDIYDAL--A-GTR---SDANIYVESDE 67 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTC-----CEEEEEECGGGHHH--HHHHHHHHHHHH--T-TSC---CCCEEEEEETT
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCC-----CEEEEEcCCCchhh--hHHHHHHHHHhH--H-hcC---CCeEEEeCCcc
Confidence 69999999 99999999999988721 36889998 4322 011011122110 0 000 0112333332
Q ss_pred HHHHhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..++++++|+||++.-. . .+.++++.+..+ . +.+++..+|.++
T Consensus 68 l~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~-~~~vlv~SNPv~ 126 (313)
T 1hye_A 68 NLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-C-DTKIFVITNPVD 126 (313)
T ss_dssp CGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEECSSSHH
T ss_pred hHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecCcHH
Confidence 45678999999998632 1 133444555554 3 678888888554
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0038 Score=63.41 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=62.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++++|+|+|.+|.++|..|+..| .+|.++++++.. .+.....+ .. ..+.++
T Consensus 265 GKtVvVtGaGgIG~aiA~~Laa~G-------A~Viv~D~~~~~------a~~Aa~~g--------------~d-v~~lee 316 (488)
T 3ond_A 265 GKVAVVAGYGDVGKGCAAALKQAG-------ARVIVTEIDPIC------ALQATMEG--------------LQ-VLTLED 316 (488)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHTT--------------CE-ECCGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEcCCHHH------HHHHHHhC--------------Cc-cCCHHH
Confidence 368999999999999999999999 899999987643 22222222 11 235566
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+...+|+|+.++....+- -......++++.+|+....+
T Consensus 317 ~~~~aDvVi~atG~~~vl--~~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 317 VVSEADIFVTTTGNKDII--MLDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp TTTTCSEEEECSSCSCSB--CHHHHTTSCTTEEEEESSST
T ss_pred HHHhcCEEEeCCCChhhh--hHHHHHhcCCCeEEEEcCCC
Confidence 778899999988753321 11234556788888877644
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0044 Score=59.67 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=62.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC---CCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe--
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE---ETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-- 134 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~---~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-- 134 (419)
..+++.|+|+|.+|.+++..|++.|. .+|++++|+ .++ .+++++.+..... ..+..
T Consensus 147 ~gk~~lVlGAGGaaraia~~L~~~G~------~~v~v~nRt~~~~~~--a~~la~~~~~~~~-----------~~v~~~~ 207 (312)
T 3t4e_A 147 RGKTMVLLGAGGAATAIGAQAAIEGI------KEIKLFNRKDDFFEK--AVAFAKRVNENTD-----------CVVTVTD 207 (312)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC------SEEEEEECSSTHHHH--HHHHHHHHHHHSS-----------CEEEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC------CEEEEEECCCchHHH--HHHHHHHhhhccC-----------cceEEec
Confidence 44689999999999999999999992 389999999 433 3344444443210 01111
Q ss_pred cCCH---HHHhcCCCEEEEccCcchHHHHHHHH---hccCCCCcEEEEee
Q 014757 135 DPDL---ENAVKDANMLVFVTPHQFMEGICKRL---VGKVNGDVEAISLI 178 (419)
Q Consensus 135 ~~~~---~ea~~~aDlVilavp~~~~~~vl~~l---~~~l~~~tiivs~~ 178 (419)
..+. .+.+.++|+||-|||.--....-..+ ...++++.+++++.
T Consensus 208 ~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v 257 (312)
T 3t4e_A 208 LADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECV 257 (312)
T ss_dssp TTCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECC
T ss_pred hHhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEec
Confidence 2332 34567899999999973210000011 13456778888875
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.003 Score=58.79 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=59.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
-+.|||+++|.|+||..+++. + + .++ .+|+ ++ +.++ + +.+++|
T Consensus 10 ~~~~rV~i~G~GaIG~~v~~~--~-~-------leLv~v~~---~k------~gel---g--------------v~a~~d 53 (253)
T 1j5p_A 10 HHHMTVLIIGMGNIGKKLVEL--G-N-------FEKIYAYD---RI------SKDI---P--------------GVVRLD 53 (253)
T ss_dssp -CCCEEEEECCSHHHHHHHHH--S-C-------CSEEEEEC---SS------CCCC---S--------------SSEECS
T ss_pred cccceEEEECcCHHHHHHHhc--C-C-------cEEEEEEe---cc------cccc---C--------------ceeeCC
Confidence 356999999999999999887 3 5 554 5676 33 1111 1 346677
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+++.+.++|+|+.|.....+++... +.|..|.-+++++-|.
T Consensus 54 ~d~lla~pD~VVe~A~~~av~e~~~---~iL~aG~dvv~~S~ga 94 (253)
T 1j5p_A 54 EFQVPSDVSTVVECASPEAVKEYSL---QILKNPVNYIIISTSA 94 (253)
T ss_dssp SCCCCTTCCEEEECSCHHHHHHHHH---HHTTSSSEEEECCGGG
T ss_pred HHHHhhCCCEEEECCCHHHHHHHHH---HHHHCCCCEEEcChhh
Confidence 7776678999999998887766544 4456788888877654
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0062 Score=60.22 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=60.8
Q ss_pred CCCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEE-ecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 58 VLHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMW-VFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 58 ~~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~-~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
.|.++||+||| +|..|.-+.+.|.+... .++..+ ..++.. ++++.+...-.+ ...+|.......++..
T Consensus 16 ~M~~~kVaIvGAtG~vG~ell~lL~~hp~------~el~~l~aS~~sa--Gk~~~~~~~~~~--~~~~p~~~~~~~v~~~ 85 (381)
T 3hsk_A 16 HMSVKKAGVLGATGSVGQRFILLLSKHPE------FEIHALGASSRSA--GKKYKDAASWKQ--TETLPETEQDIVVQEC 85 (381)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCSS------EEEEEEEECTTTT--TSBHHHHCCCCC--SSCCCHHHHTCBCEES
T ss_pred cCCccEEEEECCCChHHHHHHHHHHcCCC------ceEEEeecccccc--CCCHHHhccccc--ccccccccccceEEeC
Confidence 35667999999 69999999999987642 466433 222221 233322210000 0000000000012222
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+ .++.+.++|+||+|+|...-.++...+.. .+..||+++.-.
T Consensus 86 ~-~~~~~~~~Dvvf~alp~~~s~~~~~~~~~---~G~~VIDlSa~f 127 (381)
T 3hsk_A 86 K-PEGNFLECDVVFSGLDADVAGDIEKSFVE---AGLAVVSNAKNY 127 (381)
T ss_dssp S-SCTTGGGCSEEEECCCHHHHHHHHHHHHH---TTCEEEECCSTT
T ss_pred c-hhhhcccCCEEEECCChhHHHHHHHHHHh---CCCEEEEcCCcc
Confidence 2 22135689999999999887777766643 578899987643
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0096 Score=57.07 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=65.7
Q ss_pred cCeEEEE-Cc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVV-GS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~II-Ga-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..+|+|| |+ |.+|...+..|.+.| ++ .++..++.+. . +.+ .++++..++
T Consensus 13 ~~siaVV~Gasg~~G~~~~~~l~~~G-------~~-~v~~VnP~~~-g----~~i----------------~G~~vy~sl 63 (305)
T 2fp4_A 13 KNTKVICQGFTGKQGTFHSQQALEYG-------TN-LVGGTTPGKG-G----KTH----------------LGLPVFNTV 63 (305)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT-------CE-EEEEECTTCT-T----CEE----------------TTEEEESSH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHCC-------Cc-EEEEeCCCcC-c----ceE----------------CCeeeechH
Confidence 3568888 98 999999999999999 77 4455555430 0 000 135677788
Q ss_pred HHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+|+.. +.|++++++|+....++++++... . =..++.++.|+..
T Consensus 64 ~el~~~~~vD~avI~vP~~~~~~~~~e~i~~-G-i~~iv~~t~G~~~ 108 (305)
T 2fp4_A 64 KEAKEQTGATASVIYVPPPFAAAAINEAIDA-E-VPLVVCITEGIPQ 108 (305)
T ss_dssp HHHHHHHCCCEEEECCCHHHHHHHHHHHHHT-T-CSEEEECCCCCCH
T ss_pred HHhhhcCCCCEEEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCh
Confidence 88777 899999999999999988876552 1 1355667777753
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0036 Score=61.88 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=70.3
Q ss_pred CeEEEECcchHH-HHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCc-CCccCCCC---ccCCCeEecC
Q 014757 62 SKVTVVGSGNWG-SVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNE-NVKYLPGI---KLGKNVVADP 136 (419)
Q Consensus 62 mkI~IIGaG~mG-~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~-~~~~~~~~---~l~~~i~~~~ 136 (419)
||+..+|+|++| +.++..|.++| ++|++.++++.. ++++++.+. ++...+.. ....++++..
T Consensus 1 mkavhfGaGniGRGfig~~l~~~g-------~~v~f~dv~~~~------i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~ 67 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADAG-------IQLTFADVNQVV------LDALNARHSYQVHVVGETEQVDTVSGVNAVS 67 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHTT-------CEEEEEESCHHH------HHHHHHHSEEEEEEESSSEEEEEEESCEEEE
T ss_pred CcEEEECCCccchhhHHHHHHHcC-------CeEEEEeCCHHH------HHHHhcCCCEEEEEccCCcceEEEEEEEEEe
Confidence 799999999999 56677788899 999999998654 899987653 11111110 0112233321
Q ss_pred ----CHHHHhcCCCEEEEccCcchHHHHHHHHhccC--------CCCcEEEEeecCccc
Q 014757 137 ----DLENAVKDANMLVFVTPHQFMEGICKRLVGKV--------NGDVEAISLIKGMEV 183 (419)
Q Consensus 137 ----~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l--------~~~tiivs~~nGi~~ 183 (419)
+.-+.+.++|+|..++.......+...|...| .+.-.|++|-|-..+
T Consensus 68 s~~~~~~~~i~~adlitT~vG~~~l~~i~~~l~~~L~~R~~~~~~~pltilsCeN~~~n 126 (382)
T 3h2z_A 68 SIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNIIACENMVRG 126 (382)
T ss_dssp TTSSHHHHHHTTCSEEEECCCHHHHHHTHHHHHHHHHHHHHHTCCSCEEEEECCSSTTH
T ss_pred CcHHHHHHHHcCCCEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCcEEEECCCccch
Confidence 12235679999999999877666654443322 134568888885543
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.003 Score=62.07 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=48.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-++|+|+|+|+||..+|..|.+.| .+|.++|++++. ++.+.+. + .... +
T Consensus 171 L~GktV~V~G~G~VG~~~A~~L~~~G-------akVvv~D~~~~~------l~~~a~~~g--------------a~~v-~ 222 (364)
T 1leh_A 171 LEGLAVSVQGLGNVAKALCKKLNTEG-------AKLVVTDVNKAA------VSAAVAEEG--------------ADAV-A 222 (364)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHHHC--------------CEEC-C
T ss_pred CCcCEEEEECchHHHHHHHHHHHHCC-------CEEEEEcCCHHH------HHHHHHHcC--------------CEEE-C
Confidence 34478999999999999999999999 899999987643 3333331 2 1222 2
Q ss_pred HHHHhc-CCCEEEEccCcc
Q 014757 138 LENAVK-DANMLVFVTPHQ 155 (419)
Q Consensus 138 ~~ea~~-~aDlVilavp~~ 155 (419)
.++... +||+++.|....
T Consensus 223 ~~~ll~~~~DIvip~a~~~ 241 (364)
T 1leh_A 223 PNAIYGVTCDIFAPCALGA 241 (364)
T ss_dssp GGGTTTCCCSEEEECSCSC
T ss_pred hHHHhccCCcEeeccchHH
Confidence 233333 899999886543
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=63.12 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=55.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCC--CceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSF--HDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~--~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
.++||+|||+|.||..++..|.++....... ..+| .+++|+.++ .+ +. + ....++
T Consensus 2 k~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~------~~-----~~----------~-~~~~~~ 59 (332)
T 2ejw_A 2 EALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRK------PR-----AI----------P-QELLRA 59 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTS------CC-----SS----------C-GGGEES
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHH------hh-----cc----------C-cccccC
Confidence 4579999999999999999998763000000 0343 456666443 11 10 0 012456
Q ss_pred CHHHHhcCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEEeec
Q 014757 137 DLENAVKDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs~~n 179 (419)
|.++.+ +.|+|+.|+++.. ..+...+ .+..|.-||+..+
T Consensus 60 d~~~ll-~iDvVve~t~~~~~a~~~~~~---AL~aGKhVVtaNk 99 (332)
T 2ejw_A 60 EPFDLL-EADLVVEAMGGVEAPLRLVLP---ALEAGIPLITANK 99 (332)
T ss_dssp SCCCCT-TCSEEEECCCCSHHHHHHHHH---HHHTTCCEEECCH
T ss_pred CHHHHh-CCCEEEECCCCcHHHHHHHHH---HHHcCCeEEECCc
Confidence 777766 8999999999763 2333332 2334666666433
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.01 Score=56.59 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=65.1
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+|.|+|+ |.||......+.+.| ++ .++..++.+. . +.+ .++++..+++
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g-------~~-~v~~VnP~~~-g----~~i----------------~G~~vy~sl~ 63 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYG-------TK-VVAGVTPGKG-G----SEV----------------HGVPVYDSVK 63 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHT-------CE-EEEEECTTCT-T----CEE----------------TTEEEESSHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCC-------Cc-EEEEeCCCCC-C----ceE----------------CCEeeeCCHH
Confidence 357888898 999999999999888 66 4455555430 0 000 1356778888
Q ss_pred HHhc--C-CCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 140 NAVK--D-ANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~--~-aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++.. + +|+++++||+....+++++.... + -..+|..+.|+..
T Consensus 64 el~~~~~~~DvaIi~vp~~~~~~~v~ea~~~-G-i~~vVi~t~G~~~ 108 (297)
T 2yv2_A 64 EALAEHPEINTSIVFVPAPFAPDAVYEAVDA-G-IRLVVVITEGIPV 108 (297)
T ss_dssp HHHHHCTTCCEEEECCCGGGHHHHHHHHHHT-T-CSEEEECCCCCCH
T ss_pred HHhhcCCCCCEEEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCH
Confidence 8665 5 99999999999999988877653 1 1335567778753
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0058 Score=58.19 Aligned_cols=36 Identities=19% Similarity=0.486 Sum_probs=32.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
...||.|||+|.+|+.++..|+.+|. -.++++|.+.
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGV------G~i~lvD~D~ 70 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGI------GKLLLFDYDK 70 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTC------SEEEEECCCB
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCC------CEEEEECCCc
Confidence 34689999999999999999999995 6899999875
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.012 Score=57.49 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=61.6
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-C
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-P 136 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~ 136 (419)
-+|.||+||| +|..|.-+.+.|.+... .++..+.-.... ++++.+.... +. ..+.+. .
T Consensus 11 ~~~~~V~IvGAtG~vG~ellrlL~~hP~------~el~~l~S~~~a--G~~~~~~~p~----------~~--~~l~~~~~ 70 (351)
T 1vkn_A 11 HHMIRAGIIGATGYTGLELVRLLKNHPE------AKITYLSSRTYA--GKKLEEIFPS----------TL--ENSILSEF 70 (351)
T ss_dssp -CCEEEEEESTTSHHHHHHHHHHHHCTT------EEEEEEECSTTT--TSBHHHHCGG----------GC--CCCBCBCC
T ss_pred cceeEEEEECCCCHHHHHHHHHHHcCCC------cEEEEEeCcccc--cCChHHhChh----------hc--cCceEEeC
Confidence 3567999998 59999999999998752 567666543322 3332221110 00 011121 2
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
++++...++|+||+|+|...-.++...+ .+..||+++.-.
T Consensus 71 ~~~~~~~~~Dvvf~alp~~~s~~~~~~~-----~g~~VIDlSsdf 110 (351)
T 1vkn_A 71 DPEKVSKNCDVLFTALPAGASYDLVREL-----KGVKIIDLGADF 110 (351)
T ss_dssp CHHHHHHHCSEEEECCSTTHHHHHHTTC-----CSCEEEESSSTT
T ss_pred CHHHhhcCCCEEEECCCcHHHHHHHHHh-----CCCEEEECChhh
Confidence 4544336899999999998776665443 688999998644
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.013 Score=53.64 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=56.7
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|.|||+|.+|..-+..|.++| .+|++++.+... + .+.+.+.+. .. + +.-.-+.
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~G-------A~VtVvap~~~~----~-l~~l~~~~~-i~------~---i~~~~~~ 86 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEG-------AAITVVAPTVSA----E-INEWEAKGQ-LR------V---KRKKVGE 86 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGC-------CCEEEECSSCCH----H-HHHHHHTTS-CE------E---ECSCCCG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEECCCCCH----H-HHHHHHcCC-cE------E---EECCCCH
Confidence 34478999999999999999999999 899999976431 2 234433221 10 0 0001122
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHh
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~ 165 (419)
+ .+.++|+||.|+.+..+...+...+
T Consensus 87 ~-dL~~adLVIaAT~d~~~N~~I~~~a 112 (223)
T 3dfz_A 87 E-DLLNVFFIVVATNDQAVNKFVKQHI 112 (223)
T ss_dssp G-GSSSCSEEEECCCCTHHHHHHHHHS
T ss_pred h-HhCCCCEEEECCCCHHHHHHHHHHH
Confidence 2 3678999999998887766665554
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0086 Score=58.19 Aligned_cols=108 Identities=14% Similarity=0.044 Sum_probs=57.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCC-----ccC---CCe
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGI-----KLG---KNV 132 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~-----~l~---~~i 132 (419)
|+||+|+|+|.+|..+++.|.+... .+|..++-.... .+.+..-++..-.+.++.... .+. ..+
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~------vevvaI~d~~~~--~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i 74 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGK------VDIVAINDPFID--LNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPI 74 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCS------SEEEEEECSSSC--HHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEE
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCC------cEEEEecCCCCC--HHHHHHHhhcccccCCCCCceEEcCCeEEECCeEE
Confidence 4699999999999999999987641 565544421011 112111112111111111110 010 112
Q ss_pred Eec--CCHHHH-h--cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 133 VAD--PDLENA-V--KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 133 ~~~--~~~~ea-~--~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
++. .++++. . .++|+||.|+|.....+... .++..|..+|.+++
T Consensus 75 ~v~~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~---~~l~aGak~V~iSa 123 (335)
T 1u8f_O 75 TIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAG---AHLQGGAKRVIISA 123 (335)
T ss_dssp EEECCSSGGGCCTTTTTCCEEEECSSSCCSHHHHG---GGGGGTCSEEEESS
T ss_pred EEEecCCHHHCccccCCCCEEEECCCchhhHHHHH---HHHhCCCeEEEecc
Confidence 222 366653 1 47999999999876655543 44455666666654
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0049 Score=57.92 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=56.7
Q ss_pred CCcCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-+++.|||.|. +|.++|..|.+.| ..|++..+.. .+
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~g-------AtVtv~~~~t----------------------------------~~ 186 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRN-------YTVSVCHSKT----------------------------------KD 186 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTT-------CEEEEECTTC----------------------------------SC
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCC-------CeEEEEeCCc----------------------------------cc
Confidence 3447899999875 8999999999999 8999887532 23
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++.++.||+||.+++...+ +. ..+++++++||++.
T Consensus 187 L~~~~~~ADIVI~Avg~p~~---I~--~~~vk~GavVIDvg 222 (276)
T 3ngx_A 187 IGSMTRSSKIVVVAVGRPGF---LN--REMVTPGSVVIDVG 222 (276)
T ss_dssp HHHHHHHSSEEEECSSCTTC---BC--GGGCCTTCEEEECC
T ss_pred HHHhhccCCEEEECCCCCcc---cc--HhhccCCcEEEEec
Confidence 45567889999999987432 11 24678899999874
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0073 Score=58.48 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=58.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHc-------CCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCe
Q 014757 61 KSKVTVVGSGNWGSVASKLIASN-------TLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNV 132 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~-------G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i 132 (419)
|+||+|||+|.||..++..|.++ |. ..+|. +.++++...+.-++.+.+...... .
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~-----~~~lvaV~d~~~~~~~~id~~~~~~~~~~~------------~ 64 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIG-----EFKVTAVADSKSSISGDFSLVEALRMKRET------------G 64 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHC-----CEEEEEEECSSCEEESSCCHHHHHHHHHHH------------S
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCC-----CEEEEEEEeCChHhccccCHHHHHhhhccC------------c
Confidence 68999999999999999999876 10 14544 556654431110111112211000 0
Q ss_pred Eec--CCHHHHhc--CCCEEEEccCcchH-HHHHHHHhccCCCCcEEEEeec
Q 014757 133 VAD--PDLENAVK--DANMLVFVTPHQFM-EGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 133 ~~~--~~~~ea~~--~aDlVilavp~~~~-~~vl~~l~~~l~~~tiivs~~n 179 (419)
..+ .|.++.+. +.|+|+.|+|+... .++.+.+...+..+.-|++..|
T Consensus 65 ~~~~~~d~~~ll~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NK 116 (327)
T 3do5_A 65 MLRDDAKAIEVVRSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNK 116 (327)
T ss_dssp SCSBCCCHHHHHHHSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCS
T ss_pred cccCCCCHHHHhcCCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCc
Confidence 122 37777654 68999999998532 1133334445566777777655
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.011 Score=61.47 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=31.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|||+|.+|+.+|..|+..|. -.++++|.+.
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~aGV------G~ItLvD~D~ 360 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAWGV------RKITFVDNGT 360 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC------CEEEEECCCB
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------CEEEEEcCCC
Confidence 3689999999999999999999995 6899999875
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=61.48 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=61.3
Q ss_pred CCcCeEEEECcchH-HHHHHHHHHHcCCCCCCCCceEEEEecCCCCC-CcchHHHHHHhcCcCCccCCCCccCCCeEe--
Q 014757 59 LHKSKVTVVGSGNW-GSVASKLIASNTLRLSSFHDEVRMWVFEETLP-SGEKLTDVINRTNENVKYLPGIKLGKNVVA-- 134 (419)
Q Consensus 59 ~~~mkI~IIGaG~m-G~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~-~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-- 134 (419)
....++.|||+|.| |..+|..|...| ..|++.+|+..+. +. .+.+.. . .......
T Consensus 175 l~gk~vvVIG~G~iVG~~~A~~L~~~g-------AtVtv~nR~~~~l~~r---a~~la~----------~-~~~~t~~~~ 233 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRPLAALLANDG-------ATVYSVDVNNIQKFTR---GESLKL----------N-KHHVEDLGE 233 (320)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTS-------CEEEEECSSEEEEEES---CCCSSC----------C-CCEEEEEEE
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHCC-------CEEEEEeCchHHHHhH---HHHHhh----------h-ccccccccc
Confidence 34578999999976 999999999999 7899999874320 00 000000 0 0000001
Q ss_pred c--CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 135 D--PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 135 ~--~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+ .++++.+.+||+||.+|+.... ++ -..++++++++|++.
T Consensus 234 t~~~~L~e~l~~ADIVIsAtg~p~~--vI--~~e~vk~GavVIDVg 275 (320)
T 1edz_A 234 YSEDLLKKCSLDSDVVITGVPSENY--KF--PTEYIKEGAVCINFA 275 (320)
T ss_dssp CCHHHHHHHHHHCSEEEECCCCTTC--CB--CTTTSCTTEEEEECS
T ss_pred ccHhHHHHHhccCCEEEECCCCCcc--ee--CHHHcCCCeEEEEcC
Confidence 2 4677788999999999997431 01 023467899999885
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0053 Score=59.29 Aligned_cols=84 Identities=19% Similarity=0.168 Sum_probs=49.6
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.|||.|+|+ |.+|+.++..|.+.|...++..++|.++|+.+.....+.....+.... ..+...+..+.+..
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~--------~~~~~di~~~~~~~ 75 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA--------FPLLAGLEATDDPK 75 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT--------CTTEEEEEEESCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccc--------ccccCCeEeccChH
Confidence 479999996 999999999999988210000028999998641100000011222110 01112345556767
Q ss_pred HHhcCCCEEEEcc
Q 014757 140 NAVKDANMLVFVT 152 (419)
Q Consensus 140 ea~~~aDlVilav 152 (419)
++++++|+||.+.
T Consensus 76 ~a~~~~D~Vih~A 88 (327)
T 1y7t_A 76 VAFKDADYALLVG 88 (327)
T ss_dssp HHTTTCSEEEECC
T ss_pred HHhCCCCEEEECC
Confidence 7788999999874
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0023 Score=58.41 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=32.9
Q ss_pred CCCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 58 VLHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+.||+|.|.| +|.+|..++..|++.|. ++|++++|+++.
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~------~~V~~~~R~~~~ 60 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQT------IKQTLFARQPAK 60 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTT------EEEEEEESSGGG
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCC------ceEEEEEcChhh
Confidence 34567899999 69999999999999982 689999998654
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0052 Score=58.53 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=54.0
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
++|.|+|+ |.+|..++..|.+.| ++|++++|++.. .....+.+...+.... ...+.-..++.+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~l~R~~~~--~~~~~~~l~~~~v~~v-------~~Dl~d~~~l~~ 75 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLG-------HPTYVFTRPNSS--KTTLLDEFQSLGAIIV-------KGELDEHEKLVE 75 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT-------CCEEEEECTTCS--CHHHHHHHHHTTCEEE-------ECCTTCHHHHHH
T ss_pred CeEEEECCCchHHHHHHHHHHHCC-------CcEEEEECCCCc--hhhHHHHhhcCCCEEE-------EecCCCHHHHHH
Confidence 48999995 999999999999999 899999998742 1111222333232110 000000122345
Q ss_pred HhcCCCEEEEccCc---chHHHHHHHHh
Q 014757 141 AVKDANMLVFVTPH---QFMEGICKRLV 165 (419)
Q Consensus 141 a~~~aDlVilavp~---~~~~~vl~~l~ 165 (419)
+++++|+||.+... .....+++...
T Consensus 76 a~~~~d~vi~~a~~~~~~~~~~l~~aa~ 103 (318)
T 2r6j_A 76 LMKKVDVVISALAFPQILDQFKILEAIK 103 (318)
T ss_dssp HHTTCSEEEECCCGGGSTTHHHHHHHHH
T ss_pred HHcCCCEEEECCchhhhHHHHHHHHHHH
Confidence 67889999998874 23444444443
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.023 Score=55.83 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=57.3
Q ss_pred cCeEEEEC-cchHHHHHHH-HHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVG-SGNWGSVASK-LIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~-~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|+||+|+| .|.+|.-+.+ .|.+..... .+++++..+. . +.. +. .+.+..+ .+....++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~----v~i~~~~~~s-~--G~~----v~-------~~~g~~i--~~~~~~~~ 60 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDA----IRPVFFSTSQ-L--GQA----AP-------SFGGTTG--TLQDAFDL 60 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGG----SEEEEEESSS-T--TSB----CC-------GGGTCCC--BCEETTCH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCe----EEEEEEEeCC-C--CCC----cc-------ccCCCce--EEEecCCh
Confidence 57999999 8999999999 565554100 2455555432 2 111 10 0001111 12223345
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCc--EEEEeecC
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDV--EAISLIKG 180 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~t--iivs~~nG 180 (419)
++ +.++|+||.|+|.....+....+.. .|. +||+.+.-
T Consensus 61 ~~-~~~~DvVf~a~g~~~s~~~a~~~~~---~G~k~vVID~ss~ 100 (367)
T 1t4b_A 61 EA-LKALDIIVTCQGGDYTNEIYPKLRE---SGWQGYWIDAASS 100 (367)
T ss_dssp HH-HHTCSEEEECSCHHHHHHHHHHHHH---TTCCCEEEECSST
T ss_pred HH-hcCCCEEEECCCchhHHHHHHHHHH---CCCCEEEEcCChh
Confidence 54 5789999999998777777666554 344 88888753
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0065 Score=57.84 Aligned_cols=73 Identities=10% Similarity=0.135 Sum_probs=55.8
Q ss_pred CcCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-+++.|||.|. +|.++|..|.+.| ..|++.+|... ++
T Consensus 164 ~Gk~vvVIG~s~iVG~p~A~lL~~~g-------AtVtv~~~~T~----------------------------------~l 202 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGAPVAALLMKEN-------ATVTIVHSGTS----------------------------------TE 202 (300)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT-------CEEEEECTTSC----------------------------------HH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-------CeEEEEeCCCC----------------------------------Cc
Confidence 346899999876 8999999999999 89999986421 12
Q ss_pred H--HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 139 E--NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 139 ~--ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+ +.+++||+||.+++...+ + -..+++++++||++.
T Consensus 203 ~l~~~~~~ADIVI~Avg~p~~---I--~~~~vk~GavVIDvg 239 (300)
T 4a26_A 203 DMIDYLRTADIVIAAMGQPGY---V--KGEWIKEGAAVVDVG 239 (300)
T ss_dssp HHHHHHHTCSEEEECSCCTTC---B--CGGGSCTTCEEEECC
T ss_pred hhhhhhccCCEEEECCCCCCC---C--cHHhcCCCcEEEEEe
Confidence 2 557899999999996432 1 124678999999874
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0091 Score=56.38 Aligned_cols=74 Identities=14% Similarity=0.215 Sum_probs=56.7
Q ss_pred CCcCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-+++.|||.|. +|.++|..|.+.| ..|++..+.. .+
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~g-------AtVtv~h~~t----------------------------------~~ 196 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAG-------ATVSVCHIKT----------------------------------KD 196 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-------CEEEEECTTC----------------------------------SC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-------CeEEEEeCCc----------------------------------hh
Confidence 3447899999877 7999999999999 7899887542 23
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++.++.||+||.+++...+ + -..+++++++||++.
T Consensus 197 L~~~~~~ADIVI~Avg~p~~---I--~~~~vk~GavVIDVg 232 (285)
T 3p2o_A 197 LSLYTRQADLIIVAAGCVNL---L--RSDMVKEGVIVVDVG 232 (285)
T ss_dssp HHHHHTTCSEEEECSSCTTC---B--CGGGSCTTEEEEECC
T ss_pred HHHHhhcCCEEEECCCCCCc---C--CHHHcCCCeEEEEec
Confidence 45567899999999986432 1 135678899999873
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.018 Score=55.85 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=57.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCC--CceE-EEEecCCCCCCc----chHHHHHHhcCcCCccCCCCccCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSF--HDEV-RMWVFEETLPSG----EKLTDVINRTNENVKYLPGIKLGKN 131 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~--~~~V-~l~~r~~~~~~~----~~l~~~i~~~g~~~~~~~~~~l~~~ 131 (419)
|.++||+|||+|.||..++..|.+.... ..+ ..+| .+.+|++++... ++..+.+...+
T Consensus 4 M~~irvgIiG~G~VG~~~~~~l~~~~~~-~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~-------------- 68 (331)
T 3c8m_A 4 MKTINLSIFGLGNVGLNLLRIIRSFNEE-NRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGS-------------- 68 (331)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHHHHH-CSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTC--------------
T ss_pred CcEEeEEEEecCHHHHHHHHHHHhChHH-HhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCC--------------
Confidence 4567999999999999999999775200 000 0344 466676544111 00111111111
Q ss_pred e-EecC---CHHHHh-cCCCEEEEccCcc----hHHHHHHHHhccCCCCcEEEEeec
Q 014757 132 V-VADP---DLENAV-KDANMLVFVTPHQ----FMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 132 i-~~~~---~~~ea~-~~aDlVilavp~~----~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+ ..++ |+++.+ .+.|+|+.|+|+. ...+.. ...+..|.-||+.-+
T Consensus 69 ~~~~~~~~~d~~~ll~~~iDvVv~~t~~~~~~~~~~~~~---~~AL~aGkhVvtanK 122 (331)
T 3c8m_A 69 LDSLEYESISASEALARDFDIVVDATPASADGKKELAFY---KETFENGKDVVTANK 122 (331)
T ss_dssp GGGCCSEECCHHHHHHSSCSEEEECSCCCSSSHHHHHHH---HHHHHTTCEEEECCC
T ss_pred cccccCCCCCHHHHhCCCCCEEEECCCCCCccchHHHHH---HHHHHCCCeEEecCc
Confidence 1 1334 777655 3689999999985 222233 233445777776544
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0056 Score=59.53 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=56.9
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PD 137 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~ 137 (419)
.||||+|+| .|.+|.-+.+.|.+++.. ..++..+...... ++. +. +.+. .+... .+
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p----~~elv~i~s~~~~--G~~----~~--------~~~~----~i~~~~~~ 59 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFP----VDELFLLASERSE--GKT----YR--------FNGK----TVRVQNVE 59 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCC----EEEEEEEECTTTT--TCE----EE--------ETTE----EEEEEEGG
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCC----CEEEEEEECCCCC--CCc----ee--------ecCc----eeEEecCC
Confidence 468999999 899999999999887310 1466666532211 000 00 0010 11221 12
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
++ .+.++|+||+|+|.....+...... ..|..+|+++.
T Consensus 60 ~~-~~~~vDvVf~a~g~~~s~~~a~~~~---~~G~~vId~s~ 97 (336)
T 2r00_A 60 EF-DWSQVHIALFSAGGELSAKWAPIAA---EAGVVVIDNTS 97 (336)
T ss_dssp GC-CGGGCSEEEECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred hH-HhcCCCEEEECCCchHHHHHHHHHH---HcCCEEEEcCC
Confidence 22 3467999999999877666665544 34778888774
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.01 Score=56.08 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=56.4
Q ss_pred CCcCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-+++.|||.|. +|.++|..|.+.| ..|++..+.. .+
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~g-------AtVtv~hs~t----------------------------------~~ 197 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAK-------ATVTTCHRFT----------------------------------TD 197 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-------CEEEEECTTC----------------------------------SS
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-------CeEEEEeCCc----------------------------------hh
Confidence 3446899999887 7999999999999 7898886532 23
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++.++.||+||.+++...+ + -..+++++++||++.
T Consensus 198 L~~~~~~ADIVI~Avg~p~~---I--~~~~vk~GavVIDvg 233 (285)
T 3l07_A 198 LKSHTTKADILIVAVGKPNF---I--TADMVKEGAVVIDVG 233 (285)
T ss_dssp HHHHHTTCSEEEECCCCTTC---B--CGGGSCTTCEEEECC
T ss_pred HHHhcccCCEEEECCCCCCC---C--CHHHcCCCcEEEEec
Confidence 45567899999999986432 1 125678899999873
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0061 Score=59.37 Aligned_cols=93 Identities=16% Similarity=0.278 Sum_probs=54.9
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDL 138 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~ 138 (419)
+|||+|+| .|.+|..+.+.|.++++.. .++..+...... ++. +. +.+. .+... .++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~----~elv~i~s~~~~--g~~----~~--------~~g~----~i~~~~~~~ 63 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPL----HRLHLLASAESA--GQR----MG--------FAES----SLRVGDVDS 63 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCC----SCEEEEECTTTT--TCE----EE--------ETTE----EEECEEGGG
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCc----EEEEEEecCCCC--CCc----cc--------cCCc----ceEEecCCH
Confidence 47999999 7999999999998766211 345555422111 000 00 0010 11111 123
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
++ +.++|+||+|+|.....+....... .|..+|+++.
T Consensus 64 ~~-~~~~DvV~~a~g~~~s~~~a~~~~~---aG~kvId~Sa 100 (340)
T 2hjs_A 64 FD-FSSVGLAFFAAAAEVSRAHAERARA---AGCSVIDLSG 100 (340)
T ss_dssp CC-GGGCSEEEECSCHHHHHHHHHHHHH---TTCEEEETTC
T ss_pred HH-hcCCCEEEEcCCcHHHHHHHHHHHH---CCCEEEEeCC
Confidence 22 5689999999998776666655543 4677777764
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.07 E-value=0.015 Score=56.51 Aligned_cols=106 Identities=15% Similarity=0.058 Sum_probs=55.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccC-------CCCcc--C-CC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYL-------PGIKL--G-KN 131 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~-------~~~~l--~-~~ 131 (419)
+||+|+|+|.+|..+.+.|.+... .+|..++-.... .+.....++....+..+. .+..+ . ..
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~------vevvaI~d~~~~--~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~ 75 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSED------VELVAVNDPFIT--TDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKP 75 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSS------EEEEEEECSSSC--HHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEE
T ss_pred eEEEEECcCHHHHHHHHHHhCCCC------eEEEEEECCCCC--HHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeE
Confidence 599999999999999999987631 455544321011 111122222111111110 01011 0 01
Q ss_pred eEec--CCHHHH---hcCCCEEEEccCcchHHHHHHHHhccCCCCc--EEEEee
Q 014757 132 VVAD--PDLENA---VKDANMLVFVTPHQFMEGICKRLVGKVNGDV--EAISLI 178 (419)
Q Consensus 132 i~~~--~~~~ea---~~~aDlVilavp~~~~~~vl~~l~~~l~~~t--iivs~~ 178 (419)
+.+. .++++. -.++|+||.|+|.....+....... .|. +||+..
T Consensus 76 i~v~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~---aGak~VVIs~p 126 (337)
T 3e5r_O 76 VTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLK---GGAKKVVISAP 126 (337)
T ss_dssp EEEECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHH---TTCSEEEESSC
T ss_pred EEEEecCChHHccccccCCCEEEECCCchhhHHHHHHHHH---cCCCEEEEecC
Confidence 2222 366552 1479999999998666555544332 344 666653
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.012 Score=57.74 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=58.2
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDL 138 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~ 138 (419)
++||+||| +|..|.-+.+.|.+.++.. .++.++...... ++.+ ...+ . .+.+. .+.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~----~el~~~as~~sa--G~~~----~~~~--------~----~~~~~~~~~ 59 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPI----DKIRYLASARSA--GKSL----KFKD--------Q----DITIEETTE 59 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCE----EEEEEEECTTTT--TCEE----EETT--------E----EEEEEECCT
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCc----EEEEEEEccccC--CCcc----eecC--------C----CceEeeCCH
Confidence 47999999 7999999999999875100 244555432221 1111 0111 0 11121 122
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+ .+.++|+||+|+|...-.+....+.. .|..+|+++.-.
T Consensus 60 ~-~~~~~Dvvf~a~~~~~s~~~a~~~~~---~G~~vIDlSa~~ 98 (366)
T 3pwk_A 60 T-AFEGVDIALFSAGSSTSAKYAPYAVK---AGVVVVDNTSYF 98 (366)
T ss_dssp T-TTTTCSEEEECSCHHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred H-HhcCCCEEEECCChHhHHHHHHHHHH---CCCEEEEcCCcc
Confidence 2 36789999999998777777666543 578899988643
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0017 Score=58.53 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=33.3
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.||||.|.| +|.+|..++..|++.| ++|++++|+++.
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~ 40 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRG-------FEVTAVVRHPEK 40 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTT-------CEEEEECSCGGG
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC-------CEEEEEEcCccc
Confidence 468999999 5999999999999999 999999998654
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.012 Score=55.95 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=57.2
Q ss_pred CCcCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-+++.|||.|. +|..+|..|.+.| ..|++.++.. .+
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~g-------AtVtv~hs~t----------------------------------~~ 201 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNN-------ATVTTCHSKT----------------------------------AH 201 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-------CEEEEECTTC----------------------------------SS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCC-------CeEEEEECCc----------------------------------cc
Confidence 3446899999995 7999999999999 8899886432 34
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++.++.||+||.+++...+ + -..+++++++||++.
T Consensus 202 L~~~~~~ADIVI~Avg~p~~---I--~~~~vk~GavVIDVg 237 (301)
T 1a4i_A 202 LDEEVNKGDILVVATGQPEM---V--KGEWIKPGAIVIDCG 237 (301)
T ss_dssp HHHHHTTCSEEEECCCCTTC---B--CGGGSCTTCEEEECC
T ss_pred HHHHhccCCEEEECCCCccc---C--CHHHcCCCcEEEEcc
Confidence 55667899999999998542 1 124578899999884
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.006 Score=59.71 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=32.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|||.|||+|..|..+|..|+++| ++|++++|++..
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G-------~~v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHG-------IKVTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-------CCEEEEecCCCC
Confidence 89999999999999999999999 999999987643
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0096 Score=56.10 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=56.4
Q ss_pred CCcCeEEEECcchH-HHHHHHHHHHc--CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 59 LHKSKVTVVGSGNW-GSVASKLIASN--TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 59 ~~~mkI~IIGaG~m-G~~lA~~La~~--G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
..-+++.|||.|.+ |..+|..|.+. | ..|++..+..
T Consensus 156 l~gk~vvVvG~s~iVG~p~A~lL~~~g~~-------atVtv~h~~t---------------------------------- 194 (281)
T 2c2x_A 156 IAGAHVVVIGRGVTVGRPLGLLLTRRSEN-------ATVTLCHTGT---------------------------------- 194 (281)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHTSTTTC-------CEEEEECTTC----------------------------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHhcCCCC-------CEEEEEECch----------------------------------
Confidence 34578999999975 99999999988 6 7899886542
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.++.+.++.||+||.+++...+ + -..+++++.+||++.
T Consensus 195 ~~L~~~~~~ADIVI~Avg~p~~---I--~~~~vk~GavVIDVg 232 (281)
T 2c2x_A 195 RDLPALTRQADIVVAAVGVAHL---L--TADMVRPGAAVIDVG 232 (281)
T ss_dssp SCHHHHHTTCSEEEECSCCTTC---B--CGGGSCTTCEEEECC
T ss_pred hHHHHHHhhCCEEEECCCCCcc---c--CHHHcCCCcEEEEcc
Confidence 2345567899999999997542 1 124568899999874
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0058 Score=58.57 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=33.3
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..+|||.|.|+ |.+|..++..|++.| ++|++++|++..
T Consensus 11 ~~~M~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~ 49 (342)
T 2x4g_A 11 GAHVKYAVLGATGLLGHHAARAIRAAG-------HDLVLIHRPSSQ 49 (342)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTT-------CEEEEEECTTSC
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCC-------CEEEEEecChHh
Confidence 34579999995 999999999999999 999999998765
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.024 Score=55.37 Aligned_cols=108 Identities=14% Similarity=0.007 Sum_probs=58.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCC-----cc--C-CC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGI-----KL--G-KN 131 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~-----~l--~-~~ 131 (419)
.|+||+|+|+|.+|.-+.+.|.+... .+|..++-.... .+.++..++....+..+.+.. .+ . ..
T Consensus 16 ~~ikVgI~G~G~iGr~llR~l~~~p~------veivaindp~~~--~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~ 87 (354)
T 3cps_A 16 FQGTLGINGFGRIGRLVLRACMERND------ITVVAINDPFMD--VEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKV 87 (354)
T ss_dssp --CEEEEECCSHHHHHHHHHHHTCSS------CEEEEEECTTSC--HHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEE
T ss_pred cceEEEEECCCHHHHHHHHHHHcCCC------eEEEEecCCCCC--hhHhhhhhcccccCCCCCCcEEEeCCEEEECCeE
Confidence 35799999999999999999987641 566555420111 111122222222222211111 11 1 12
Q ss_pred eEec--CCHHHH-h--cCCCEEEEccCcchHHHHHHHHhccCCCCc--EEEEee
Q 014757 132 VVAD--PDLENA-V--KDANMLVFVTPHQFMEGICKRLVGKVNGDV--EAISLI 178 (419)
Q Consensus 132 i~~~--~~~~ea-~--~~aDlVilavp~~~~~~vl~~l~~~l~~~t--iivs~~ 178 (419)
++.. .++++. . .++|+||.|++.....+.. ..++..|. +||+..
T Consensus 88 i~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a---~~~l~~GakkvVId~p 138 (354)
T 3cps_A 88 VKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKA---SLHLKGGAKKVIISAP 138 (354)
T ss_dssp EEEECCSCGGGCCHHHHTCCEEEECSSSCCSHHHH---GGGGTTTCSEEEESSC
T ss_pred EEEEecCChHHCCcccCCCCEEEECCCchhhHHHH---HHHHHcCCcEEEEeCC
Confidence 2232 355542 1 4799999999986655544 34455566 788765
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0049 Score=59.66 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=59.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCH-
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDL- 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~- 138 (419)
.++|.|+|.|.+|..++..|.+.| + |.+++++++. ++ +++.+... +.. .+++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g-------~-v~vid~~~~~------~~-~~~~~~~~-----------i~gd~~~~~ 168 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSE-------V-FVLAEDENVR------KK-VLRSGANF-----------VHGDPTRVS 168 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSC-------E-EEEESCGGGH------HH-HHHTTCEE-----------EESCTTSHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC-------c-EEEEeCChhh------hh-HHhCCcEE-----------EEeCCCCHH
Confidence 458999999999999999999999 8 9999998766 56 55533211 011 1222
Q ss_pred --HHH-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 139 --ENA-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 139 --~ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+++ +.++|.|+++++++...-..-.....+.++..++.-
T Consensus 169 ~L~~a~i~~a~~vi~~~~~d~~n~~~~~~ar~~~~~~~iiar 210 (336)
T 1lnq_A 169 DLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAE 210 (336)
T ss_dssp HHHHTCSTTEEEEEECCSSHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred HHHhcChhhccEEEEcCCccHHHHHHHHHHHHHCCCCeEEEE
Confidence 223 568999999999754333333334445555444443
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.014 Score=59.07 Aligned_cols=72 Identities=15% Similarity=0.086 Sum_probs=49.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+||.|||.|..|.+.|..|++.| ++|+++|+++.. .....+.+++.|.. +..-.+++
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G-------~~V~~~D~~~~~--~~~~~~~L~~~gi~------------~~~g~~~~ 66 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLG-------AIVTVNDGKPFD--ENPTAQSLLEEGIK------------VVCGSHPL 66 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTT-------CEEEEEESSCGG--GCHHHHHHHHTTCE------------EEESCCCG
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC-------CEEEEEeCCccc--CChHHHHHHhCCCE------------EEECCChH
Confidence 4579999999999999999999999 999999986531 11224566665532 12223333
Q ss_pred HHhcC-CCEEEEcc
Q 014757 140 NAVKD-ANMLVFVT 152 (419)
Q Consensus 140 ea~~~-aDlVilav 152 (419)
+...+ +|+||++.
T Consensus 67 ~~~~~~~d~vv~sp 80 (451)
T 3lk7_A 67 ELLDEDFCYMIKNP 80 (451)
T ss_dssp GGGGSCEEEEEECT
T ss_pred HhhcCCCCEEEECC
Confidence 33455 89998864
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.015 Score=58.86 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=60.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCC-ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC--
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFH-DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD-- 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~-~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~-- 137 (419)
.+||.|||+|.||+.++..|+++.. +. .+|++.+..... .++.+.. |.... .+.++.+
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~d----v~~~~I~vaD~~~~~---~~~~~~~---g~~~~---------~~~Vdadnv 73 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFD----IKPSQVTIIAAEGTK---VDVAQQY---GVSFK---------LQQITPQNY 73 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBC----CCGGGEEEEESSCCS---CCHHHHH---TCEEE---------ECCCCTTTH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCC----CceeEEEEeccchhh---hhHHhhc---CCcee---------EEeccchhH
Confidence 4789999999999999999999751 10 268888876543 1222222 21110 0112222
Q ss_pred ---HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 138 ---LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ---~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+++++++.|+||-+.+..+...+++.... .+.-.+++.+
T Consensus 74 ~~~l~aLl~~~DvVIN~s~~~~~l~Im~acle---aGv~YlDTa~ 115 (480)
T 2ph5_A 74 LEVIGSTLEENDFLIDVSIGISSLALIILCNQ---KGALYINAAT 115 (480)
T ss_dssp HHHTGGGCCTTCEEEECCSSSCHHHHHHHHHH---HTCEEEESSC
T ss_pred HHHHHHHhcCCCEEEECCccccCHHHHHHHHH---cCCCEEECCC
Confidence 22345556999999988877777765543 3667777764
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.046 Score=50.60 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=52.2
Q ss_pred CeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|||+|+|+ |.||..++..+.+. + +++. +++++.+ +
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~-------~elva~~d~~~d-----------------------------------l 38 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADD-------LTLSAELDAGDP-----------------------------------L 38 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTT-------CEEEEEECTTCC-----------------------------------T
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-------CEEEEEEccCCC-----------------------------------H
Confidence 69999996 99999999998866 5 7765 4444321 1
Q ss_pred HHHh-cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAV-KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~-~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++.+ .++|+||-++.+..+.+.+..... .+.-+|..+.|+..
T Consensus 39 ~~~~~~~~DvvIDfT~p~a~~~~~~~a~~---~g~~~VigTTG~~~ 81 (245)
T 1p9l_A 39 SLLTDGNTEVVIDFTHPDVVMGNLEFLID---NGIHAVVGTTGFTA 81 (245)
T ss_dssp HHHHHTTCCEEEECSCTTTHHHHHHHHHH---TTCEEEECCCCCCH
T ss_pred HHHhccCCcEEEEccChHHHHHHHHHHHH---cCCCEEEcCCCCCH
Confidence 2222 268999977777776666655443 36667776777653
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.022 Score=59.17 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=30.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
..||.|||+|.+|+.+|..|+..|. -.++++|.+
T Consensus 327 ~~kVLIVGaGGLGs~va~~La~aGV------G~ItLvD~D 360 (598)
T 3vh1_A 327 NTKVLLLGAGTLGCYVSRALIAWGV------RKITFVDNG 360 (598)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC------CEEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------CEEEEECCC
Confidence 3689999999999999999999995 589999876
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0095 Score=56.33 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=56.7
Q ss_pred CCcCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..-+++.|||.|. +|..+|..|.+.| ..|++..+.. .+
T Consensus 157 l~gk~vvVIG~s~iVG~p~A~lL~~~g-------AtVtv~hs~t----------------------------------~~ 195 (288)
T 1b0a_A 157 TFGLNAVVIGASNIVGRPMSMELLLAG-------CTTTVTHRFT----------------------------------KN 195 (288)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTT-------CEEEEECSSC----------------------------------SC
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHCC-------CeEEEEeCCc----------------------------------hh
Confidence 3446899999996 6999999999998 8999986542 23
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++.++.||+||.+++...+ + -..+++++++||++.
T Consensus 196 L~~~~~~ADIVI~Avg~p~l---I--~~~~vk~GavVIDVg 231 (288)
T 1b0a_A 196 LRHHVENADLLIVAVGKPGF---I--PGDWIKEGAIVIDVG 231 (288)
T ss_dssp HHHHHHHCSEEEECSCCTTC---B--CTTTSCTTCEEEECC
T ss_pred HHHHhccCCEEEECCCCcCc---C--CHHHcCCCcEEEEcc
Confidence 45567789999999997542 1 024568899999874
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0086 Score=56.45 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=32.6
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|||.|.|+ |-+|+.++..|.++| |+|++..|++..
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G-------~~V~~l~R~~~~ 36 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG-------HEVTLVSRKPGP 36 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-------CEEEEEECCCCc
Confidence 89999996 999999999999999 999999998754
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.02 Score=55.41 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=57.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHc-----CCCCCCCCceEE-EEecCCCCC----CcchHHHHHHhcCcCCccCCCCcc
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASN-----TLRLSSFHDEVR-MWVFEETLP----SGEKLTDVINRTNENVKYLPGIKL 128 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~-----G~~~~~~~~~V~-l~~r~~~~~----~~~~l~~~i~~~g~~~~~~~~~~l 128 (419)
|.++||+|||.|.||+.++..|.++ |. ..+|. +.+++.... +.++..+...+.+..
T Consensus 2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~-----~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~--------- 67 (325)
T 3ing_A 2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAF-----SIKVVGVSDSRSYASGRNLDISSIISNKEKTGRI--------- 67 (325)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHHHHHC--C-----EEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCS---------
T ss_pred CceEEEEEEcCcHHHHHHHHHHHhchhhccCC-----CEEEEEEEecChhhcccccCHHHHHHHhhhcCCC---------
Confidence 5567999999999999999999875 20 03443 455544321 111111122222210
Q ss_pred CCCeEecCCHHHHh--cCCCEEEEccCcchH-HHHHHHHhccCCCCcEEEEeecC
Q 014757 129 GKNVVADPDLENAV--KDANMLVFVTPHQFM-EGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 129 ~~~i~~~~~~~ea~--~~aDlVilavp~~~~-~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+ .. .. +..+.+ .+.|+|+.|+|+... +.+.+.+...+..|.-||+..|+
T Consensus 68 ~-~~-~~-d~~e~l~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~ 119 (325)
T 3ing_A 68 S-DR-AF-SGPEDLMGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKS 119 (325)
T ss_dssp C-SS-BC-CSGGGGTTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCH
T ss_pred C-cc-cC-CHHHHhcCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCch
Confidence 0 00 11 333434 368999999998532 33344444455567778877664
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0081 Score=56.20 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=33.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|.+|||.|.|+|.+|..++..|.+.| ++|++++|+++.
T Consensus 1 M~~~~ilVtGaG~iG~~l~~~L~~~g-------~~V~~~~r~~~~ 38 (286)
T 3gpi_A 1 MSLSKILIAGCGDLGLELARRLTAQG-------HEVTGLRRSAQP 38 (286)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTT-------CCEEEEECTTSC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCCccc
Confidence 45689999999999999999999999 999999998654
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.013 Score=55.23 Aligned_cols=73 Identities=16% Similarity=0.070 Sum_probs=55.9
Q ss_pred CcCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-+++.|||.|. +|.++|..|++.| ..|++..+.. .++
T Consensus 160 ~Gk~vvVvGrs~iVG~plA~lL~~~g-------AtVtv~hs~T----------------------------------~~L 198 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGRPMALELLLGG-------CTVTVTHRFT----------------------------------RDL 198 (286)
T ss_dssp TTCEEEEECTTSTTHHHHHHHHHHTT-------CEEEEECTTC----------------------------------SCH
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCC-------CeEEEEeCCC----------------------------------cCH
Confidence 346899999876 8999999999999 8899886532 234
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++.++.||+||.+++...+ + -..+++++++||++.
T Consensus 199 ~~~~~~ADIVI~Avg~p~~---I--~~~~vk~GavVIDvg 233 (286)
T 4a5o_A 199 ADHVSRADLVVVAAGKPGL---V--KGEWIKEGAIVIDVG 233 (286)
T ss_dssp HHHHHTCSEEEECCCCTTC---B--CGGGSCTTCEEEECC
T ss_pred HHHhccCCEEEECCCCCCC---C--CHHHcCCCeEEEEec
Confidence 5567899999999986432 1 125678999999874
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.021 Score=55.85 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=31.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..+|.|||+|.+|+.++..|+.+|. -.++++|++.
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGv------g~i~lvD~D~ 152 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGI------GEIILIDNDQ 152 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC------SEEEEEECCB
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC------CeEEEECCCc
Confidence 4689999999999999999999995 6899999874
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.077 Score=52.25 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=57.9
Q ss_pred CcCeEEEEC-cchHHHHHHH-HHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 60 HKSKVTVVG-SGNWGSVASK-LIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~-~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..+||+||| +|..|.-|.+ .|.++... ..++.++..+ .. ++++ ..+.+..+ .+...++
T Consensus 3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~----~~~l~~~ss~-~a--G~~~-----------~~~~~~~~--~v~~~~~ 62 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFD----LIEPVFFSTS-NA--GGKA-----------PSFAKNET--TLKDATS 62 (377)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTGGG----GSEEEEEESS-CT--TSBC-----------CTTCCSCC--BCEETTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCC----ceEEEEEech-hc--CCCH-----------HHcCCCce--EEEeCCC
Confidence 468999999 5999999999 77766410 0244444432 21 1111 00111111 1233334
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCC--cEEEEeecC
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGD--VEAISLIKG 180 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~--tiivs~~nG 180 (419)
+++ +.++|+||+|+|.....+....+.. .| ++||+++.-
T Consensus 63 ~~~-~~~vDvvf~a~~~~~s~~~~~~~~~---~G~k~~VID~ss~ 103 (377)
T 3uw3_A 63 IDD-LKKCDVIITCQGGDYTNDVFPKLRA---AGWNGYWIDAASS 103 (377)
T ss_dssp HHH-HHTCSEEEECSCHHHHHHHHHHHHH---TTCCSEEEECSST
T ss_pred hhH-hcCCCEEEECCChHHHHHHHHHHHH---CCCCEEEEeCCcc
Confidence 443 6789999999999877777766543 35 488888753
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0053 Score=59.79 Aligned_cols=44 Identities=25% Similarity=0.219 Sum_probs=33.9
Q ss_pred CCCCCCCCcCeEEEEC-cchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCC
Q 014757 53 GSDDGVLHKSKVTVVG-SGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 53 ~~~~~~~~~mkI~IIG-aG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+++..|.||||.|.| +|.+|+.++..|.+. | ++|++++|+++.
T Consensus 16 ~~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g-------~~V~~~~r~~~~ 61 (372)
T 3slg_A 16 TQGPGSMKAKKVLILGVNGFIGHHLSKRILETTD-------WEVFGMDMQTDR 61 (372)
T ss_dssp -------CCCEEEEESCSSHHHHHHHHHHHHHSS-------CEEEEEESCCTT
T ss_pred hcCCcccCCCEEEEECCCChHHHHHHHHHHhCCC-------CEEEEEeCChhh
Confidence 3445567789999999 599999999999998 8 999999998765
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.083 Score=51.88 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=56.3
Q ss_pred CeEEEECc-chHHHHHHH-HHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 62 SKVTVVGS-GNWGSVASK-LIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~-~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|||+|||+ |..|.-|.+ .|.++... ..++.++..+. . |.....+.+..+ .+...++++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~----~~~l~~~ss~~-a-------------G~~~~~~~~~~~--~~~~~~~~~ 60 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTSQ-I-------------GVPAPNFGKDAG--MLHDAFDIE 60 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESSS-T-------------TSBCCCSSSCCC--BCEETTCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCC----ceEEEEEeccc-c-------------CcCHHHhCCCce--EEEecCChh
Confidence 69999995 999999999 77776410 02445443221 1 111111111111 123333444
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCC--cEEEEeec
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGD--VEAISLIK 179 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~--tiivs~~n 179 (419)
+ +.++|+||+|+|.....+....+.. .| ++||+++.
T Consensus 61 ~-~~~~Dvvf~a~~~~~s~~~~~~~~~---~G~k~~VID~ss 98 (370)
T 3pzr_A 61 S-LKQLDAVITCQGGSYTEKVYPALRQ---AGWKGYWIDAAS 98 (370)
T ss_dssp H-HTTCSEEEECSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred H-hccCCEEEECCChHHHHHHHHHHHH---CCCCEEEEeCCc
Confidence 4 6789999999999877777666543 34 48888875
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.01 Score=55.98 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=49.8
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCC-Ccch--HHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLP-SGEK--LTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~-~~~~--l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
||+|.|+|+ |.+|..++..|++.| ++|++.+|+.... +.++ ..+.+...+... +...+.-..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~-------v~~D~~d~~ 69 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-------HPTFLLVRESTASSNSEKAQLLESFKASGANI-------VHGSIDDHA 69 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-------CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEE-------ECCCTTCHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-------CCEEEEECCcccccCHHHHHHHHHHHhCCCEE-------EEeccCCHH
Confidence 678999996 999999999999999 8999999986431 0111 011222222110 000110012
Q ss_pred CHHHHhcCCCEEEEccCc
Q 014757 137 DLENAVKDANMLVFVTPH 154 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~ 154 (419)
++.++++++|+||.+...
T Consensus 70 ~l~~~~~~~d~vi~~a~~ 87 (308)
T 1qyc_A 70 SLVEAVKNVDVVISTVGS 87 (308)
T ss_dssp HHHHHHHTCSEEEECCCG
T ss_pred HHHHHHcCCCEEEECCcc
Confidence 234567789999999875
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.026 Score=54.94 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=56.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCC-ccC--C-CC-cc-CCCeE
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENV-KYL--P-GI-KL-GKNVV 133 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~-~~~--~-~~-~l-~~~i~ 133 (419)
|+||+|+|+|.+|..+++.|.++.. .+|. +.+++++. ....++..|... ..+ + .. .+ ...+.
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~------~evvaV~d~~~~~-----~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~ 70 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDD------MEVIGVTKTKPDF-----EARLAVEKGYKLFVAIPDNERVKLFEDAGIP 70 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSS------EEEEEEEESSCSH-----HHHHHHHTTCCEEESSCCHHHHHHHHHTTCC
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCC------ceEEEEecCCHHH-----HHHHHHhcCCccccccCCCceeecccCCeEE
Confidence 4699999999999999999987631 5654 44444322 111222211000 000 0 00 00 01122
Q ss_pred ecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEE
Q 014757 134 ADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs 176 (419)
+..++++...++|+||.|++.....+..+ ..+++.|+.||+
T Consensus 71 v~~~~~~~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~ 111 (343)
T 2yyy_A 71 VEGTILDIIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAIL 111 (343)
T ss_dssp CCCBGGGTGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEE
T ss_pred ECCchHHhccCCCEEEECCCccccHHHHH--HHHHHCCCEEEE
Confidence 22344444568999999999876554443 355666766664
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.012 Score=58.12 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=32.9
Q ss_pred CCCCCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 53 GSDDGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 53 ~~~~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+....+..++|.|||+|..|.+.|..|+++| ++|+++++.+.
T Consensus 15 ~~~~~~~~~~dV~IVGaG~aGl~~A~~La~~G-------~~V~v~E~~~~ 57 (407)
T 3rp8_A 15 GENLYFQGHMKAIVIGAGIGGLSAAVALKQSG-------IDCDVYEAVKE 57 (407)
T ss_dssp --------CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESSSC
T ss_pred CCcccCCCCCEEEEECCCHHHHHHHHHHHhCC-------CCEEEEeCCCC
Confidence 33344556689999999999999999999999 89999999765
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.01 Score=59.44 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=30.9
Q ss_pred ccCCCCCCCCCCCc-CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 48 SSFSSGSDDGVLHK-SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 48 ~~~~~~~~~~~~~~-mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
++++........+| ++|.|||+|..|..+|..|+++| ++|+++++.+
T Consensus 8 ~~~~~~~~~~~~~m~~~ViIVGaGpaGl~~A~~La~~G-------~~V~viE~~~ 55 (430)
T 3ihm_A 8 HHHSSGLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQHD-------VDVTVYTDRK 55 (430)
T ss_dssp ---------------CEEEEECCHHHHHHHHHHHHHTT-------CEEEEEESCC
T ss_pred ccccceeecccCcCCCCEEEECCcHHHHHHHHHHHHCC-------CeEEEEcCCC
Confidence 34444433333334 47999999999999999999999 9999999865
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.016 Score=54.24 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=47.8
Q ss_pred CeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|||.|.|+ |.+|..++..|.+. | ++|++.+|+++. .+.+...+... +...+.-..+.+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g-------~~V~~~~R~~~~------~~~~~~~~v~~-------~~~D~~d~~~l~ 60 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI-------DHFHIGVRNVEK------VPDDWRGKVSV-------RQLDYFNQESMV 60 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-------TTEEEEESSGGG------SCGGGBTTBEE-------EECCTTCHHHHH
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC-------CcEEEEECCHHH------HHHhhhCCCEE-------EEcCCCCHHHHH
Confidence 68999995 99999999999997 8 899999998754 12222211110 000010012234
Q ss_pred HHhcCCCEEEEccCc
Q 014757 140 NAVKDANMLVFVTPH 154 (419)
Q Consensus 140 ea~~~aDlVilavp~ 154 (419)
++++++|+||.+...
T Consensus 61 ~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 61 EAFKGMDTVVFIPSI 75 (289)
T ss_dssp HHTTTCSEEEECCCC
T ss_pred HHHhCCCEEEEeCCC
Confidence 567899999998764
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.012 Score=56.83 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=54.4
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCC-CcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLP-SGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~-~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|.+|+|.|+|+ |.+|..++..|.+.| ++|++++|++... ++....+.+...+.... ...+.-..
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g-------~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~-------~~Dl~d~~ 73 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAH-------RPTYILARPGPRSPSKAKIFKALEDKGAIIV-------YGLINEQE 73 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTT-------CCEEEEECSSCCCHHHHHHHHHHHHTTCEEE-------ECCTTCHH
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC-------CCEEEEECCCCCChhHHHHHHHHHhCCcEEE-------EeecCCHH
Confidence 44679999997 999999999999999 8999999986320 01111122333222110 00010012
Q ss_pred CHHHHhc--CCCEEEEccCcc---hHHHHHHHHh
Q 014757 137 DLENAVK--DANMLVFVTPHQ---FMEGICKRLV 165 (419)
Q Consensus 137 ~~~ea~~--~aDlVilavp~~---~~~~vl~~l~ 165 (419)
+..+++. ++|+||-+.... ....+++...
T Consensus 74 ~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~ 107 (346)
T 3i6i_A 74 AMEKILKEHEIDIVVSTVGGESILDQIALVKAMK 107 (346)
T ss_dssp HHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHH
T ss_pred HHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHH
Confidence 2344567 899999998753 3444454443
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.014 Score=55.11 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=49.6
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHH---HHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDV---INRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~---i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+|+|.|+|+ |.+|..++..|.+.| ++|++++|++...+.++ .+. +...+... +...+.-..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~~~~~~~~-~~~~~~~~~~~~~~-------~~~D~~d~~ 68 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG-------HPTYVLFRPEVVSNIDK-VQMLLYFKQLGAKL-------IEASLDDHQ 68 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-------CCEEEECCSCCSSCHHH-HHHHHHHHTTTCEE-------ECCCSSCHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-------CcEEEEECCCcccchhH-HHHHHHHHhCCeEE-------EeCCCCCHH
Confidence 689999995 999999999999999 89999999854210111 122 22222110 000111112
Q ss_pred CHHHHhcCCCEEEEccCc
Q 014757 137 DLENAVKDANMLVFVTPH 154 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~ 154 (419)
+..++++++|+||.+...
T Consensus 69 ~l~~~~~~~d~vi~~a~~ 86 (313)
T 1qyd_A 69 RLVDALKQVDVVISALAG 86 (313)
T ss_dssp HHHHHHTTCSEEEECCCC
T ss_pred HHHHHHhCCCEEEECCcc
Confidence 344567889999998764
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.012 Score=52.58 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=30.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.|+|||+|.-|.+.|..|+++| ++|+++++.+.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G-------~~V~v~Ek~~~ 36 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAG-------HQVHLFDKSRG 36 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC-------CCEEEEECCCC
Confidence 5999999999999999999999 89999998653
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.037 Score=53.83 Aligned_cols=93 Identities=17% Similarity=0.316 Sum_probs=57.6
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDLE 139 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~~ 139 (419)
+||+|+| +|..|.-+.+.|.++.+. ..++.++...... ++.+ . +.+. .+.+. .+.
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp----~~el~~~~s~~~a--G~~~-----------~-~~~~----~~~~~~~~~- 58 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFP----ASAVRFFASARSQ--GRKL-----------A-FRGQ----EIEVEDAET- 58 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCC----EEEEEEEECTTTS--SCEE-----------E-ETTE----EEEEEETTT-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----ceEEEEEECcccC--CCce-----------e-ecCC----ceEEEeCCH-
Confidence 6899999 699999999999987410 0345555433221 1111 0 1110 11121 122
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+.+.++|+||+|+|.....+....+.. .|..||+++.-
T Consensus 59 ~~~~~~Dvvf~a~~~~~s~~~a~~~~~---~G~~vID~Sa~ 96 (344)
T 3tz6_A 59 ADPSGLDIALFSAGSAMSKVQAPRFAA---AGVTVIDNSSA 96 (344)
T ss_dssp SCCTTCSEEEECSCHHHHHHHHHHHHH---TTCEEEECSST
T ss_pred HHhccCCEEEECCChHHHHHHHHHHHh---CCCEEEECCCc
Confidence 235789999999999877777766543 57889998753
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.034 Score=55.85 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=56.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---CC--------------cchHHHHHHhcCcCCccC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---PS--------------GEKLTDVINRTNENVKYL 123 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~~--------------~~~l~~~i~~~g~~~~~~ 123 (419)
..||.|||+|.+|+.++..|+.+|. -.++++|.+.-. +. .+.+.+.+++..
T Consensus 40 ~~~VlvvG~GGlGs~va~~La~aGv------g~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~ln------ 107 (434)
T 1tt5_B 40 TCKVLVIGAGGLGCELLKNLALSGF------RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV------ 107 (434)
T ss_dssp TCCEEEECSSTHHHHHHHHHHHTTC------CCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHS------
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCC------CEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhC------
Confidence 3589999999999999999999995 589999865311 00 112233333311
Q ss_pred CCCcc---CCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHH
Q 014757 124 PGIKL---GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRL 164 (419)
Q Consensus 124 ~~~~l---~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l 164 (419)
|+..+ +..+ .....+.+.++|+||.|+-+...+..+.+.
T Consensus 108 p~v~v~~~~~~i--~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~ 149 (434)
T 1tt5_B 108 PNCNVVPHFNKI--QDFNDTFYRQFHIIVCGLDSIIARRWINGM 149 (434)
T ss_dssp TTCCCEEEESCG--GGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEEeccc--chhhHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 22211 1111 111235678999999999887766666554
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.073 Score=51.46 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=55.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCC-----ccC---CCe
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGI-----KLG---KNV 132 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~-----~l~---~~i 132 (419)
|+||+|+|.|.+|.-+.+.|.++.. .+|..++-.. . .+.++--++..-.+..+.... .+. ..+
T Consensus 1 ~ikVgI~G~G~iG~~l~R~l~~~~~------veiv~i~~~~-~--~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i 71 (330)
T 1gad_O 1 TIKVGINGFGRIGRIVFRAAQKRSD------IEIVAINDLL-D--ADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKI 71 (330)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSS------EEEEEEECSS-C--HHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEE
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCC------eEEEEEcCCC-C--hhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEE
Confidence 4699999999999999999987641 4554443211 1 111111112111111111111 110 112
Q ss_pred Ee--cCCHHHH---hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 133 VA--DPDLENA---VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 133 ~~--~~~~~ea---~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+. ..++++. ..++|+||.|+|.....+...... ..|..+|+++.
T Consensus 72 ~v~~~~dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l---~~GakvVdlSa 120 (330)
T 1gad_O 72 RVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHI---TAGAKKVVMTG 120 (330)
T ss_dssp EEECCSSGGGGCHHHHTCSEEEECSSSCCSHHHHTHHH---HTTCSEEEESS
T ss_pred EEEEcCChhhCccccccCCEEEECCCccccHHHHHHHH---HCCCEEEEECC
Confidence 22 2345442 147999999999865555544433 34555666654
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.074 Score=53.38 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=63.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCc---eEEEEe----cC--CCCCCcchHHHHHHhcCcCCccCCCCccCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHD---EVRMWV----FE--ETLPSGEKLTDVINRTNENVKYLPGIKLGKN 131 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~---~V~l~~----r~--~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~ 131 (419)
..||.|+|+|.+|.+++..|.+.| . +|++++ |+ .++ .+++ +.+..... .+... ....
T Consensus 186 ~~rvlvlGAGgAg~aia~~L~~~G-------~~~~~I~vvd~~~~R~G~~~~--a~~~-~~L~~~~~--~~a~~--~~~~ 251 (439)
T 2dvm_A 186 EITLALFGAGAAGFATLRILTEAG-------VKPENVRVVELVNGKPRILTS--DLDL-EKLFPYRG--WLLKK--TNGE 251 (439)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTT-------CCGGGEEEEEEETTEEEECCT--TSCH-HHHSTTCH--HHHTT--SCTT
T ss_pred CCEEEEECccHHHHHHHHHHHHcC-------CCcCeEEEEEccCCCcCcccc--ccch-hHHHHHHH--HHhhc--cccc
Confidence 358999999999999999999999 5 799999 87 333 1121 11221000 00000 0000
Q ss_pred eEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecC
Q 014757 132 VVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 132 i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
....++.+++.++|++|-+++. ..... .....+.++.+|+++.|.
T Consensus 252 -~~~~~L~e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDLynP 298 (439)
T 2dvm_A 252 -NIEGGPQEALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPLANP 298 (439)
T ss_dssp -CCCSSHHHHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEECCSS
T ss_pred -cccccHHHHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEECCCC
Confidence 0134567788899999999997 33221 122345678899999764
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.028 Score=53.15 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=47.0
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
+|||.|.| +|.+|+.++..|.+.| ++|++.+|++.. .+ +. +... +...+. ..+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~------~~-~~--~~~~-------~~~Dl~-~~~~~ 57 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDG-------NTPIILTRSIGN------KA-IN--DYEY-------RVSDYT-LEDLI 57 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCCC--------------CCEE-------EECCCC-HHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-------CEEEEEeCCCCc------cc-CC--ceEE-------EEcccc-HHHHH
Confidence 47999999 5999999999999999 999999998543 22 22 1110 011222 33455
Q ss_pred HHhcCCCEEEEccC
Q 014757 140 NAVKDANMLVFVTP 153 (419)
Q Consensus 140 ea~~~aDlVilavp 153 (419)
++++++|+||-+..
T Consensus 58 ~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 58 NQLNDVDAVVHLAA 71 (311)
T ss_dssp HHTTTCSEEEECCC
T ss_pred HhhcCCCEEEEccc
Confidence 56779999998764
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=55.42 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=31.7
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
||+|.|.|+ |.+|..++..|++.| ++|++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG-------NPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT-------CCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC-------CcEEEEECCC
Confidence 578999996 999999999999999 8999999986
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.016 Score=54.86 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=60.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..+++.|+|+|.+|.+++..|++.| +|++++|+.++ .+++.+.+...+.. ...+ .+... +..
T Consensus 127 ~~k~vlV~GaGgiG~aia~~L~~~G--------~V~v~~r~~~~--~~~l~~~~~~~~~~-----~~~~--~~d~~-~~~ 188 (287)
T 1nvt_A 127 KDKNIVIYGAGGAARAVAFELAKDN--------NIIIANRTVEK--AEALAKEIAEKLNK-----KFGE--EVKFS-GLD 188 (287)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS--------EEEEECSSHHH--HHHHHHHHHHHHTC-----CHHH--HEEEE-CTT
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC--------CEEEEECCHHH--HHHHHHHHhhhccc-----ccce--eEEEe-eHH
Confidence 3468999999999999999999876 78999998654 23333333321100 0000 01121 223
Q ss_pred HHhcCCCEEEEccCcchHHH---H-HHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEG---I-CKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~---v-l~~l~~~l~~~tiivs~~ 178 (419)
+.+.++|+||.+++...... . +. -...++++.+++++.
T Consensus 189 ~~~~~~DilVn~ag~~~~~~~~~~~~~-~~~~l~~~~~v~Dv~ 230 (287)
T 1nvt_A 189 VDLDGVDIIINATPIGMYPNIDVEPIV-KAEKLREDMVVMDLI 230 (287)
T ss_dssp CCCTTCCEEEECSCTTCTTCCSSCCSS-CSTTCCSSSEEEECC
T ss_pred HhhCCCCEEEECCCCCCCCCCCCCCCC-CHHHcCCCCEEEEee
Confidence 34678999999998643210 0 00 023456788888875
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.029 Score=58.22 Aligned_cols=94 Identities=9% Similarity=0.094 Sum_probs=60.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH-
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN- 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e- 140 (419)
++|.|+|.|.+|..+|..|.+.| ++|.+++.+++. ++.+. . ...++ ..-...+++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g-------~~v~vid~d~~~------~~~~~----~-~i~gD------~t~~~~L~~a 404 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKP-------VPFILIDRQESP------VCNDH----V-VVYGD------ATVGQTLRQA 404 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSCCS------SCCSS----C-EEESC------SSSSTHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-------CCEEEEECChHH------HhhcC----C-EEEeC------CCCHHHHHhc
Confidence 78999999999999999999999 999999999876 22111 0 00000 000011222
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
-+.++|.+|+++++....-..-.+++.+.++..++.-.+
T Consensus 405 gi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~~~iiar~~ 443 (565)
T 4gx0_A 405 GIDRASGIIVTTNDDSTNIFLTLACRHLHSHIRIVARAN 443 (565)
T ss_dssp TTTSCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred CccccCEEEEECCCchHHHHHHHHHHHHCCCCEEEEEEC
Confidence 267899999999986444333444555556645555444
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.025 Score=55.60 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=33.7
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+..++|.|||+|..|.++|..|++.| .+|+++++.+.
T Consensus 23 ~~~~~dV~IVGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 60 (398)
T 2xdo_A 23 LLSDKNVAIIGGGPVGLTMAKLLQQNG-------IDVSVYERDND 60 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTT-------CEEEEEECSSS
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHCC-------CCEEEEeCCCC
Confidence 344568999999999999999999999 89999998754
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.053 Score=55.57 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=33.3
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+|||.|.| +|.+|..++..|.+.| ++|++++|++..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G-------~~V~~l~R~~~~ 183 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG-------HEVIQLVRKEPK 183 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-------CEEEEEESSSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-------CEEEEEECCCCC
Confidence 78999999 5999999999999999 999999998764
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.087 Score=51.13 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=21.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHc
Q 014757 61 KSKVTVVGSGNWGSVASKLIASN 83 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~ 83 (419)
++||+|+|+|.+|..+.+.|.++
T Consensus 2 ~ikVgI~G~G~IGr~v~r~l~~~ 24 (339)
T 3b1j_A 2 TIRVAINGFGRIGRNFLRCWFGR 24 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCHHHHHHHHHHHhc
Confidence 36999999999999999999876
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.015 Score=55.19 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=31.7
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.||+|.|+|+ |.+|..++..|++.| ++|++.+|++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~ 38 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFS-------HPTFIYARPL 38 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTT-------CCEEEEECCC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCC-------CcEEEEECCc
Confidence 3678999995 999999999999999 8999999986
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.029 Score=48.48 Aligned_cols=35 Identities=26% Similarity=0.170 Sum_probs=32.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|++|.|||+|..|..+|..|++.| .+|+++++.+.
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g-------~~v~lie~~~~ 35 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAG-------LKVLVLDGGRS 35 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT-------CCEEEEECSCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-------CcEEEEeCCCC
Confidence 468999999999999999999999 89999998763
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.11 Score=50.59 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=60.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---C--------------CcchHHHHHHhcCcCCccC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---P--------------SGEKLTDVINRTNENVKYL 123 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~--------------~~~~l~~~i~~~g~~~~~~ 123 (419)
..+|.|||+|.+|+.++..|+.+|. ..++++|.+.-. + ..+.+.+.+++. +
T Consensus 36 ~~~VlivG~GGlG~~ia~~La~~Gv------g~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~l--n---- 103 (346)
T 1y8q_A 36 ASRVLLVGLKGLGAEIAKNLILAGV------KGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNL--N---- 103 (346)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC------SEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHT--C----
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------CEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhH--C----
Confidence 3589999999999999999999995 589999765310 0 012223333331 1
Q ss_pred CCCcc---CCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEE
Q 014757 124 PGIKL---GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 124 ~~~~l---~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs 176 (419)
|+..+ +.. .....++.+.++|+||.|+-+...+..+.+..... +..+|+
T Consensus 104 p~v~v~~~~~~--~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~--~ip~i~ 155 (346)
T 1y8q_A 104 PMVDVKVDTED--IEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKN--SIKFFT 155 (346)
T ss_dssp TTSEEEEECSC--GGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHHT--TCEEEE
T ss_pred CCeEEEEEecc--cCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 12111 111 11123456789999999998866666665554332 344444
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.057 Score=52.29 Aligned_cols=106 Identities=16% Similarity=0.083 Sum_probs=56.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCC-------CccC-CCe
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPG-------IKLG-KNV 132 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~-------~~l~-~~i 132 (419)
|+||+|+|+|.+|.-+.+.|.++.. .+|..++-.. +.+.+...++......+.... +.+. ..+
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~~~------veivain~~~---~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i 71 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKNPD------IEVVAVNDLT---DANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEI 71 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTCTT------EEEEEEECSS---CHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEE
T ss_pred CeEEEEECCCHHHHHHHHHHhCCCC------eEEEEEeCCC---CHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEE
Confidence 5799999999999999999877641 4554444221 112222333221111111001 0011 123
Q ss_pred Eec--CCHHHH-hc--CCCEEEEccCcchHHHHHHHHhccCCCCc--EEEEee
Q 014757 133 VAD--PDLENA-VK--DANMLVFVTPHQFMEGICKRLVGKVNGDV--EAISLI 178 (419)
Q Consensus 133 ~~~--~~~~ea-~~--~aDlVilavp~~~~~~vl~~l~~~l~~~t--iivs~~ 178 (419)
.+. .++++. .. ++|+||.|+|.....+....... .|. +||+..
T Consensus 72 ~v~~~~dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~---~Gak~vVId~p 121 (334)
T 3cmc_O 72 IVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLE---AGAKKVIISAP 121 (334)
T ss_dssp EEECCSSGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHH---TTCSEEEESSC
T ss_pred EEEecCChhhcCcccCccCEEEECCCchhhHHHHHHHHH---CCCCEEEEeCC
Confidence 333 255442 12 79999999998655555444332 344 777664
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.047 Score=51.24 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=49.1
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
+|+|.|.|+ |.+|..++..|.+.|. ++|++.+|+++. .. .+.+...+.... ...+.-..+..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~------~~V~~~~R~~~~---~~-~~~l~~~~~~~~-------~~D~~d~~~l~ 67 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGT------FKVRVVTRNPRK---KA-AKELRLQGAEVV-------QGDQDDQVIME 67 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCS------SEEEEEESCTTS---HH-HHHHHHTTCEEE-------ECCTTCHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCC------ceEEEEEcCCCC---HH-HHHHHHCCCEEE-------EecCCCHHHHH
Confidence 578999997 9999999999998862 699999998765 00 123333221100 00000011234
Q ss_pred HHhcCCCEEEEccCc
Q 014757 140 NAVKDANMLVFVTPH 154 (419)
Q Consensus 140 ea~~~aDlVilavp~ 154 (419)
+++.++|.||.+...
T Consensus 68 ~~~~~~d~vi~~a~~ 82 (299)
T 2wm3_A 68 LALNGAYATFIVTNY 82 (299)
T ss_dssp HHHTTCSEEEECCCH
T ss_pred HHHhcCCEEEEeCCC
Confidence 567789999998763
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.12 Score=50.23 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=55.2
Q ss_pred CeEEEECcchHHHHHHHHHHH---cCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCC-----cc--C-C
Q 014757 62 SKVTVVGSGNWGSVASKLIAS---NTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGI-----KL--G-K 130 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~---~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~-----~l--~-~ 130 (419)
+||+|+|+|.+|..+.+.|.+ +.. .+|..++-.. +.+.+...++....+.++.... .+ . .
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~~~------~eivai~~~~---~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~ 73 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRRAE------ITVVAINELA---DAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDD 73 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGGGT------EEEEEEECSS---CHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTE
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCCCC------EEEEEEeCCC---CHHHHHHHhcccccCCCCCceEEEcCCeeEECCE
Confidence 699999999999999999987 421 4554444211 1122223332211111111110 01 0 1
Q ss_pred CeEec--CCHHHH-hc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 131 NVVAD--PDLENA-VK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 131 ~i~~~--~~~~ea-~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.+++. .++++. .. ++|+||.|++.....+........ +-..+||+..
T Consensus 74 ~i~v~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~-GakkVVId~~ 125 (339)
T 2x5j_O 74 AIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAA-GAKKVLFSHP 125 (339)
T ss_dssp EEEEECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHT-TCSEEEESSC
T ss_pred EEEEEecCChHHCcccccCCCEEEECCCccccHHHHHHHHHc-CCCEEEEecc
Confidence 23332 355542 12 799999999986655555444331 1123566654
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.026 Score=54.81 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=33.2
Q ss_pred CCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 56 DGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+...+.+|.|||+|..|.+.|..|+++| .+|+++++..
T Consensus 12 ~~~~~~~dvvIIGgG~~Gl~~A~~La~~G-------~~V~llE~~~ 50 (382)
T 1ryi_A 12 RAMKRHYEAVVIGGGIIGSAIAYYLAKEN-------KNTALFESGT 50 (382)
T ss_dssp --CCSEEEEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSS
T ss_pred hccCCCCCEEEECcCHHHHHHHHHHHhCC-------CcEEEEeCCC
Confidence 34445578999999999999999999999 8999999864
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.024 Score=55.49 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=34.1
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..||+|.|.|+ |.+|..++..|++.| ++|++++|++..
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~ 65 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHEG-------HYVIASDWKKNE 65 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSCCS
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHCC-------CeEEEEECCCcc
Confidence 35789999997 999999999999999 999999998654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.023 Score=51.47 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=33.0
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCc--eEEEEecCCCC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHD--EVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~~~~ 103 (419)
..|+|.|.| +|.+|..++..|++.| + +|++++|+++.
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G-------~~~~V~~~~r~~~~ 56 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQG-------LFSKVTLIGRRKLT 56 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHT-------CCSEEEEEESSCCC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCC-------CCCEEEEEEcCCCC
Confidence 347899999 5999999999999999 8 99999998765
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.17 Score=48.99 Aligned_cols=108 Identities=9% Similarity=0.008 Sum_probs=55.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCC------c--cCC-C
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGI------K--LGK-N 131 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~------~--l~~-~ 131 (419)
|+||+|+|+|.+|..+.+.|.+++.. ..+|..++-- .+.+.++.-++......++.... . +.. .
T Consensus 1 ~ikVgInG~G~IGr~llR~l~~~~~p----~~eivaInd~---~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~ 73 (337)
T 1rm4_O 1 KLKVAINGFGRIGRNFLRCWHGRKDS----PLDVVVINDT---GGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKV 73 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSC----SEEEEEEECT---TCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEE
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCC----CeEEEEEEcC---CCHHHHHHHhcccccCCCccceeEEecCCeEEECCeE
Confidence 46999999999999999999876210 1455444411 11222222332221111111111 1 111 1
Q ss_pred eEe--cCCHHHH-hc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 132 VVA--DPDLENA-VK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 132 i~~--~~~~~ea-~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++. ..++++. .. ++|+||.|++.....+....... .|..+|.++
T Consensus 74 i~v~~~~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~---~Gak~V~iS 122 (337)
T 1rm4_O 74 IKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQ---AGAKKVLIT 122 (337)
T ss_dssp EEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHH---TTCSEEEES
T ss_pred EEEEecCChhhCcccccCCCEEEECCCchhhHHHHHHHHH---cCCEEEEEC
Confidence 222 2455432 23 79999999998655555544332 355455544
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.033 Score=53.53 Aligned_cols=38 Identities=16% Similarity=-0.052 Sum_probs=33.4
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+.+|+|.|.|+ |.+|..++..|.+.| ++|++++|.+..
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~ 61 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLN-------QVVIGLDNFSTG 61 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCSSC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC-------CEEEEEeCCCCC
Confidence 34589999995 999999999999999 999999997653
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.042 Score=53.12 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=31.1
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
+..|.|||+|.+|.+.|..|+++| .+|+++++..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G-------~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKG-------YSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC-------CEEEEEeccC
Confidence 458999999999999999999999 8999999753
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.15 Score=50.19 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHc
Q 014757 61 KSKVTVVGSGNWGSVASKLIASN 83 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~ 83 (419)
++||+|+|+|.+|..+.+.|.++
T Consensus 2 ~ikVgInGfGrIGr~vlR~l~~~ 24 (380)
T 2d2i_A 2 TIRVAINGFGRIGRNFLRCWFGR 24 (380)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC
T ss_pred CcEEEEECcCHHHHHHHHHHhcC
Confidence 36999999999999999998876
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=94.48 E-value=0.024 Score=52.81 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=48.3
Q ss_pred CeEEEECc-chHHHHHHHHHHHc--CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASN--TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|+|.|.|+ |.+|..++..|.+. | ++|++++|+++. .+.+...+.... ...+.-..+.
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-------~~V~~~~r~~~~------~~~l~~~~~~~~-------~~D~~d~~~l 60 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-------SQIIAIVRNVEK------ASTLADQGVEVR-------HGDYNQPESL 60 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-------GGEEEEESCTTT------THHHHHTTCEEE-------ECCTTCHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-------CeEEEEEcCHHH------HhHHhhcCCeEE-------EeccCCHHHH
Confidence 57999996 99999999999998 8 999999998765 344433221100 0001001123
Q ss_pred HHHhcCCCEEEEccCc
Q 014757 139 ENAVKDANMLVFVTPH 154 (419)
Q Consensus 139 ~ea~~~aDlVilavp~ 154 (419)
.++++++|+||-+...
T Consensus 61 ~~~~~~~d~vi~~a~~ 76 (287)
T 2jl1_A 61 QKAFAGVSKLLFISGP 76 (287)
T ss_dssp HHHTTTCSEEEECCCC
T ss_pred HHHHhcCCEEEEcCCC
Confidence 4567789999987653
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.041 Score=48.16 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=32.1
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|+|.|+|+ |.+|..++..|.+.| ++|++++|+++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g-------~~V~~~~r~~~~ 39 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG-------YEVTVLVRDSSR 39 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-------CEEEEEESCGGG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC-------CeEEEEEeChhh
Confidence 79999997 999999999999999 999999998653
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.18 Score=47.85 Aligned_cols=39 Identities=21% Similarity=0.090 Sum_probs=33.7
Q ss_pred CCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 58 VLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+..|+|.|.|+ |.+|..++..|++.| ++|++.+|+++.
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~ 47 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHG-------YKVRGTARSASK 47 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCC-------CEEEEEeCCccc
Confidence 344579999997 999999999999999 999999997543
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.1 Score=51.50 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=62.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC----CC-CCcchHHHHHHhcCcCCccCCCCccCCCeEe
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE----TL-PSGEKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~----~~-~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
...||.|+|+|+.|...|..+...|. .+|+++|++- ++ .+....-+.+.+. .+. ...
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga------~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~-~~~-----------~~~ 248 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAAGA------TKVTVVDKFGIINEQEAAQLAPHHLDIAKV-TNR-----------EFK 248 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTC------CEEEEEETTEECCTTCCCSCCC---CHHHH-HSC-----------TTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCC------CeEEEEECCCcccCCccccchHHHHHHhhc-cCc-----------ccc
Confidence 34689999999999999999999993 4999999862 00 0000001111110 000 001
Q ss_pred cCCHHHHhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 135 DPDLENAVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
..+++|+++++|++|=+..+ -..++++ ..+.++.+|+.++|..
T Consensus 249 ~~~L~eav~~ADV~IG~Sapgl~T~EmV----k~Ma~~pIIfalsNPt 292 (398)
T 2a9f_A 249 SGTLEDALEGADIFIGVSAPGVLKAEWI----SKMAARPVIFAMANPI 292 (398)
T ss_dssp CCSCSHHHHTTCSEEECCSTTCCCHHHH----HTSCSSCEEEECCSSS
T ss_pred hhhHHHHhccCCEEEecCCCCCCCHHHH----HhhCCCCEEEECCCCC
Confidence 34577889999997766543 3344444 3345789999999954
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.029 Score=50.88 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=32.4
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHc--CCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASN--TLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~~ 102 (419)
+.+|+|.|.| +|.+|..++..|++. | ++|++.+|+++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g-------~~V~~~~r~~~ 41 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDK-------FVAKGLVRSAQ 41 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTT-------CEEEEEESCHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCC-------cEEEEEEcCCC
Confidence 3468999999 599999999999999 7 89999999753
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.042 Score=54.12 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=32.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.|+|+|||+|..|...|..|+++| ++|++++++..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g-------~~v~v~E~~~~ 37 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKG-------HQVHIIDQRDH 37 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT-------CEEEEEESSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC-------CcEEEEEecCC
Confidence 479999999999999999999999 89999998754
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.031 Score=53.68 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=31.2
Q ss_pred cCeEEEECcchHHHHHHHHHHH---cCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIAS---NTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~---~G~~~~~~~~~V~l~~r~~ 101 (419)
|++|.|||+|..|.+.|..|++ +| ++|+++++++
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~G-------~~V~v~Ek~~ 37 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSGP-------LYLAVWDKAD 37 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-CC-------EEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccCC-------ceEEEEECCC
Confidence 4689999999999999999999 89 8999999764
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.035 Score=52.31 Aligned_cols=75 Identities=24% Similarity=0.275 Sum_probs=49.8
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEe-cC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVA-DP 136 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~-~~ 136 (419)
..+++.|+| +|.+|.+++..|++.| .+|++++|++++ .+++.+.+... +... +.. .+
T Consensus 118 ~gk~vlVtGaaGGiG~aia~~L~~~G-------~~V~i~~R~~~~--~~~l~~~~~~~~~~~~-----------~~~D~~ 177 (287)
T 1lu9_A 118 KGKKAVVLAGTGPVGMRSAALLAGEG-------AEVVLCGRKLDK--AQAAADSVNKRFKVNV-----------TAAETA 177 (287)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-------CEEEEEESSHHH--HHHHHHHHHHHHTCCC-----------EEEECC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc-------CEEEEEECCHHH--HHHHHHHHHhcCCcEE-----------EEecCC
Confidence 346899999 9999999999999999 789999998654 23333444321 1100 111 12
Q ss_pred C---HHHHhcCCCEEEEccCc
Q 014757 137 D---LENAVKDANMLVFVTPH 154 (419)
Q Consensus 137 ~---~~ea~~~aDlVilavp~ 154 (419)
+ .++++..+|+||-+++.
T Consensus 178 ~~~~~~~~~~~~DvlVn~ag~ 198 (287)
T 1lu9_A 178 DDASRAEAVKGAHFVFTAGAI 198 (287)
T ss_dssp SHHHHHHHTTTCSEEEECCCT
T ss_pred CHHHHHHHHHhCCEEEECCCc
Confidence 2 23456678999988864
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.094 Score=55.03 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=31.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+|.|||+|.+|+.++..|+.+|. -.++++|.+.
T Consensus 18 s~VlVVGaGGLGsevak~La~aGV------G~ItlvD~D~ 51 (640)
T 1y8q_B 18 GRVLVVGAGGIGCELLKNLVLTGF------SHIDLIDLDT 51 (640)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC------CEEEEEECCB
T ss_pred CeEEEECcCHHHHHHHHHHHHcCC------CeEEEecCCE
Confidence 589999999999999999999995 5899999764
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.079 Score=50.50 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=33.5
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+.+|+|.|.| +|.+|..++..|++.| ++|++.+|+.+.
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~G-------~~V~~~~r~~~~ 41 (341)
T 3enk_A 3 STKGTILVTGGAGYIGSHTAVELLAHG-------YDVVIADNLVNS 41 (341)
T ss_dssp CSSCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEECCCSSS
T ss_pred CCCcEEEEecCCcHHHHHHHHHHHHCC-------CcEEEEecCCcc
Confidence 3457999999 5999999999999999 999999998754
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.098 Score=50.53 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=59.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
.+|.|+|+|.+|...++.+...| .+|++.++++++ .+.+++.|... + . .+.++.
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~G-------a~Vi~~~~~~~~------~~~~~~lGa~~-----------v-~-~~~~~~ 231 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAMG-------AEVSVFARNEHK------KQDALSMGVKH-----------F-Y-TDPKQC 231 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT-------CEEEEECSSSTT------HHHHHHTTCSE-----------E-E-SSGGGC
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-------CeEEEEeCCHHH------HHHHHhcCCCe-----------e-c-CCHHHH
Confidence 58999999999999988888888 789999988877 56666655321 1 2 333332
Q ss_pred hcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEe
Q 014757 142 VKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 142 ~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~ 177 (419)
.+..|+||-++... .+...++. ++++..++.+
T Consensus 232 ~~~~D~vid~~g~~~~~~~~~~~----l~~~G~iv~~ 264 (348)
T 3two_A 232 KEELDFIISTIPTHYDLKDYLKL----LTYNGDLALV 264 (348)
T ss_dssp CSCEEEEEECCCSCCCHHHHHTT----EEEEEEEEEC
T ss_pred hcCCCEEEECCCcHHHHHHHHHH----HhcCCEEEEE
Confidence 33789999999976 66555543 4444444444
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.073 Score=54.37 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=47.9
Q ss_pred CcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.++||.|||.|..|.+ +|..|.+.| ++|+++|..... ..+.+++.|.. +..-.++
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G-------~~V~~~D~~~~~-----~~~~l~~~gi~------------~~~g~~~ 76 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEG-------YQISGSDLAPNS-----VTQHLTALGAQ------------IYFHHRP 76 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTT-------CEEEEECSSCCH-----HHHHHHHTTCE------------EESSCCG
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCC-------CeEEEEECCCCH-----HHHHHHHCCCE------------EECCCCH
Confidence 4579999999999985 899999999 999999976432 24566665532 1112333
Q ss_pred HHHhcCCCEEEEc
Q 014757 139 ENAVKDANMLVFV 151 (419)
Q Consensus 139 ~ea~~~aDlVila 151 (419)
+ .+.++|+||++
T Consensus 77 ~-~~~~~d~vV~S 88 (494)
T 4hv4_A 77 E-NVLDASVVVVS 88 (494)
T ss_dssp G-GGTTCSEEEEC
T ss_pred H-HcCCCCEEEEC
Confidence 3 36689999886
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.042 Score=52.65 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=31.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..+|.|||+|..|.+.|..|+++| ++|+++++.+
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~~G-------~~V~vlE~~~ 37 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAAGG-------HEVLVAEAAE 37 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC-------CeEEEEeCCC
Confidence 458999999999999999999999 8999999874
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.1 Score=48.32 Aligned_cols=71 Identities=11% Similarity=0.238 Sum_probs=46.2
Q ss_pred eEEEECc-chHHHHHHHHHHHc--CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 63 KVTVVGS-GNWGSVASKLIASN--TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 63 kI~IIGa-G~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
||.|.|+ |.+|..++..|.+. | ++|++.+|+++. .+.+...+... +...+.-..+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g-------~~V~~~~r~~~~------~~~~~~~~~~~-------~~~D~~d~~~~~ 60 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA-------SQIVAIVRNPAK------AQALAAQGITV-------RQADYGDEAALT 60 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG-------GGEEEEESCTTT------CHHHHHTTCEE-------EECCTTCHHHHH
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC-------ceEEEEEcChHh------hhhhhcCCCeE-------EEcCCCCHHHHH
Confidence 5889996 99999999999998 8 899999998765 23343322110 000010012234
Q ss_pred HHhcCCCEEEEccC
Q 014757 140 NAVKDANMLVFVTP 153 (419)
Q Consensus 140 ea~~~aDlVilavp 153 (419)
++++++|+||-+..
T Consensus 61 ~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 61 SALQGVEKLLLISS 74 (286)
T ss_dssp HHTTTCSEEEECC-
T ss_pred HHHhCCCEEEEeCC
Confidence 56778999998765
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.11 Score=52.51 Aligned_cols=91 Identities=14% Similarity=0.219 Sum_probs=65.4
Q ss_pred CCcCeEEEECcc----hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe
Q 014757 59 LHKSKVTVVGSG----NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 59 ~~~mkI~IIGaG----~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
.+..+|+|||++ .+|......|.+.|. ..|+.++..... + . ++++
T Consensus 6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~------~~v~pVnP~~~~---------i--~--------------G~~~ 54 (457)
T 2csu_A 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKK------GKVYPVNIKEEE---------V--Q--------------GVKA 54 (457)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCS------SEEEEECSSCSE---------E--T--------------TEEC
T ss_pred cCCCeEEEECcCCCCCchHHHHHHHHHHcCC------CEEEEECCCCCe---------E--C--------------CEec
Confidence 345789999998 899999999988741 677777654211 1 1 2456
Q ss_pred cCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 135 DPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+.+++....|++++++|+..+.++++++... . =..++.++.|+.
T Consensus 55 y~sl~~lp~~~Dlavi~vp~~~~~~~v~e~~~~-G-i~~vv~~s~G~~ 100 (457)
T 2csu_A 55 YKSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEK-G-VKGVVIITAGFG 100 (457)
T ss_dssp BSSTTSCSSCCSEEEECSCHHHHHHHHHHHHHH-T-CCEEEECCCSST
T ss_pred cCCHHHcCCCCCEEEEecCHHHHHHHHHHHHHc-C-CCEEEEecCCCC
Confidence 666666556799999999999999998887653 1 135666777874
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.037 Score=55.98 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=31.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|++|.|||+|.-|.+-|..|+++| ++|+++.++..
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G-------~~V~VlEa~~~ 35 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAG-------IPVLLLEQRDK 35 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTT-------CCEEEECCC--
T ss_pred CCCEEEECCcHHHHHHHHHHHHCC-------CcEEEEccCCC
Confidence 689999999999999999999999 99999987643
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.052 Score=53.59 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=32.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCce-EEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDE-VRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~ 102 (419)
..++|.|||+|..|.++|..|+++| .+ |+++++.+.
T Consensus 3 ~~~dVvIVGaG~aGl~~A~~L~~~G-------~~~v~v~E~~~~ 39 (410)
T 3c96_A 3 EPIDILIAGAGIGGLSCALALHQAG-------IGKVTLLESSSE 39 (410)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT-------CSEEEEEESSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC-------CCeEEEEECCCC
Confidence 3468999999999999999999999 88 999998764
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.16 Score=51.31 Aligned_cols=92 Identities=13% Similarity=0.216 Sum_probs=60.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCH-
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDL- 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~- 138 (419)
..+|.|+|.|.+|..+|..|- .. ++|.++.+++++ ++.+.+.- ++..+ +.. .+|.
T Consensus 235 ~~~v~I~GgG~ig~~lA~~L~-~~-------~~v~iIE~d~~r------~~~la~~l------~~~~V---i~GD~td~~ 291 (461)
T 4g65_A 235 YRRIMIVGGGNIGASLAKRLE-QT-------YSVKLIERNLQR------AEKLSEEL------ENTIV---FCGDAADQE 291 (461)
T ss_dssp CCEEEEECCSHHHHHHHHHHT-TT-------SEEEEEESCHHH------HHHHHHHC------TTSEE---EESCTTCHH
T ss_pred ccEEEEEcchHHHHHHHHHhh-hc-------CceEEEecCHHH------HHHHHHHC------CCceE---Eeccccchh
Confidence 468999999999999999985 44 799999998776 55555421 11000 000 1222
Q ss_pred ---HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEE
Q 014757 139 ---ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAI 175 (419)
Q Consensus 139 ---~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiiv 175 (419)
++-+.++|+++.+|.+....=+...+++.++...++.
T Consensus 292 ~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa 331 (461)
T 4g65_A 292 LLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMV 331 (461)
T ss_dssp HHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred hHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccc
Confidence 2236789999999988765555555666665554444
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.074 Score=50.00 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=33.3
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+..-++|.|||+|.+|..-+..|.+.| ++|++++.+..
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~G-------a~VtViap~~~ 47 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPTG-------CKLTLVSPDLH 47 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGT-------CEEEEEEEEEC
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhCC-------CEEEEEcCCCC
Confidence 334579999999999999999999999 89999997653
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.046 Score=53.49 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHc
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASN 83 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~ 83 (419)
.++||+|||+|.||..++..|.+.
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~ 26 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAM 26 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHC
T ss_pred ceEEEEEEecCHHHHHHHHHHHhc
Confidence 457999999999999999999885
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.059 Score=52.94 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=32.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..++|.|||+|..|.++|..|++.| ++|+++++.+.
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~ 39 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAG-------VDVDVYERSPQ 39 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC-------CCEEEEecCCC
Confidence 3468999999999999999999999 89999998754
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.077 Score=51.47 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=32.7
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.|+|.|.|+ |.+|..++..|++.| ++|++.+|+++.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~R~~~~ 41 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVG-------HHVRAQVHSLKG 41 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT-------CCEEEEESCSCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-------CEEEEEECCCCh
Confidence 578999995 999999999999999 899999998765
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.059 Score=53.96 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=32.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc--eEEEEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD--EVRMWVFEE 101 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~~ 101 (419)
+..++|+|||+|..|.+.|..|++.| . +|+++++.+
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G-------~~~~V~v~E~~~ 41 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEK-------AFDQVTLFERRG 41 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTT-------CCSEEEEECSSS
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcC-------CCCCeEEEecCC
Confidence 34579999999999999999999999 7 999999875
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.062 Score=52.35 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=32.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|..++|.|||+|..|..+|..|++.| .+|+++++.+.
T Consensus 9 m~~~dVvIVGaG~aGl~~A~~L~~~G-------~~v~viE~~~~ 45 (379)
T 3alj_A 9 GKTRRAEVAGGGFAGLTAAIALKQNG-------WDVRLHEKSSE 45 (379)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC-------CCEEEEecCCC
Confidence 34578999999999999999999999 89999998764
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.06 Score=53.22 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|.|||+|..|.+.|..|+++| ++|+++.++..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G-------~~V~vlE~~~~ 34 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNG-------HEIIVLEKSAM 34 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT-------CEEEEECSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCC-------CeEEEEeCCCC
Confidence 68999999999999999999999 89999998653
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.064 Score=56.10 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=32.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
|...+|.|||+|..|.+.|..|++.| .+|+++++.+
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar~G-------~~V~LiEr~~ 56 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHKLG-------HDVTIYERSA 56 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHcCC-------CCEEEEcCCC
Confidence 33458999999999999999999999 8999999874
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.2 Score=48.45 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=56.6
Q ss_pred CeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCC-----cc--C-CC
Q 014757 62 SKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGI-----KL--G-KN 131 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~-----~l--~-~~ 131 (419)
+||+|+|+|.+|.-+.+.|.++ .. .+|..++-..+ .+.....++......++.... .+ . ..
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~------~eivain~~~~---~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~ 71 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPD------IEVVAINDLTD---TKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKE 71 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTT------CEEEEEECSSC---HHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEE
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCC------eEEEEEEcCCC---hHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeE
Confidence 4899999999999999999876 31 56655543111 112222232211111111110 11 1 12
Q ss_pred eEec--CCHHHH-hc--CCCEEEEccCcchHHHHHHHHhccCCCCc--EEEEee
Q 014757 132 VVAD--PDLENA-VK--DANMLVFVTPHQFMEGICKRLVGKVNGDV--EAISLI 178 (419)
Q Consensus 132 i~~~--~~~~ea-~~--~aDlVilavp~~~~~~vl~~l~~~l~~~t--iivs~~ 178 (419)
+.+. .++++. .. ++|+||.|+|.....+....... .|. +||+..
T Consensus 72 i~v~~~~dp~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~---aGakkvVId~~ 122 (332)
T 1hdg_O 72 IKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQ---AGAKKVIITAP 122 (332)
T ss_dssp EEEECCSSGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHH---TTCSEEEESSC
T ss_pred EEEEecCChHHCcccccCCCEEEECCccchhHHHHHHHHH---cCCcEEEEeCC
Confidence 3333 355542 12 79999999998655555544332 344 777764
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.047 Score=52.75 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=30.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
-|.|||+|..|.+.|..|+++| ++|++++|.++
T Consensus 6 DViIVGaGpaGl~~A~~La~~G-------~~V~v~Er~~~ 38 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYG-------LKTLMIEKRPE 38 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC-------CcEEEEeCCCC
Confidence 5999999999999999999999 99999998754
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.07 Score=52.98 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=31.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~ 102 (419)
...|.|||+|..|.+.|..|+++| + +|+++++.+.
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~G-------~~~V~vlE~~~~ 41 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARRG-------YTNVTVLDPYPV 41 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTT-------CCCEEEEESSCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-------CCcEEEEeCCCC
Confidence 457999999999999999999999 8 9999998753
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.05 Score=52.65 Aligned_cols=92 Identities=13% Similarity=0.212 Sum_probs=54.0
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec-CCHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD-PDLE 139 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~-~~~~ 139 (419)
|||+|+| .|.+|..+.+.|.+.++.. .++....... ..|.... +.+. .+.+. .+++
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~----~~l~~~~s~~-------------~~g~~l~-~~g~----~i~v~~~~~~ 58 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPL----SELRLYASPR-------------SAGVRLA-FRGE----EIPVEPLPEG 58 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCC----SCCEEEECGG-------------GSSCEEE-ETTE----EEEEEECCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCc----EEEEEeeccc-------------cCCCEEE-EcCc----eEEEEeCChh
Confidence 6899999 8999999999998776211 2233222110 0011000 0110 11221 1333
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+ + ++|+||.|++.....+....+.+ .|..+|+++.-
T Consensus 59 ~-~-~~DvV~~a~g~~~s~~~a~~~~~---~G~~vId~s~~ 94 (331)
T 2yv3_A 59 P-L-PVDLVLASAGGGISRAKALVWAE---GGALVVDNSSA 94 (331)
T ss_dssp C-C-CCSEEEECSHHHHHHHHHHHHHH---TTCEEEECSSS
T ss_pred h-c-CCCEEEECCCccchHHHHHHHHH---CCCEEEECCCc
Confidence 3 4 89999999998776666655543 47888888753
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.23 Score=51.09 Aligned_cols=69 Identities=6% Similarity=-0.052 Sum_probs=47.7
Q ss_pred CcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..++|.|||.|..|.+ +|..|.+.| ++|+++|..... ...+.+++.|.. +..-.++
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~~G-------~~V~~sD~~~~~----~~~~~L~~~gi~------------~~~G~~~ 74 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARALG-------HTVTGSDANIYP----PMSTQLEQAGVT------------IEEGYLI 74 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCCCT----THHHHHHHTTCE------------EEESCCG
T ss_pred cCCEEEEEEecHhhHHHHHHHHHhCC-------CEEEEECCCCCc----HHHHHHHHCCCE------------EECCCCH
Confidence 3579999999999986 788899999 999999986532 124566665532 2222344
Q ss_pred HHHhcCCCEEEEc
Q 014757 139 ENAVKDANMLVFV 151 (419)
Q Consensus 139 ~ea~~~aDlVila 151 (419)
+....++|+||++
T Consensus 75 ~~~~~~~d~vV~S 87 (524)
T 3hn7_A 75 AHLQPAPDLVVVG 87 (524)
T ss_dssp GGGCSCCSEEEEC
T ss_pred HHcCCCCCEEEEC
Confidence 4433578999885
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.064 Score=51.63 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=31.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~ 101 (419)
..++|.|||+|..|...|..|++.| + +|+++++++
T Consensus 3 ~~~~vvIIGaG~aGl~aA~~l~~~g-------~~~v~lie~~~ 38 (369)
T 3d1c_A 3 QHHKVAIIGAGAAGIGMAITLKDFG-------ITDVIILEKGT 38 (369)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT-------CCCEEEECSSS
T ss_pred ccCcEEEECcCHHHHHHHHHHHHcC-------CCcEEEEecCC
Confidence 3568999999999999999999999 8 899999874
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.062 Score=51.12 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=32.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+.+|.|||+|..|...|..|++.| ++|+++++++.
T Consensus 2 ~~~~vvIIG~G~aGl~~A~~l~~~g-------~~v~vie~~~~ 37 (357)
T 4a9w_A 2 DSVDVVVIGGGQSGLSAGYFLRRSG-------LSYVILDAEAS 37 (357)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHSS-------CCEEEECCSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC-------CCEEEEECCCC
Confidence 3468999999999999999999999 89999998754
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.059 Score=48.08 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=32.2
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|||.|.| +|.+|..++..|++.| ++|++++|+++.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g-------~~V~~~~R~~~~ 36 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD-------YQIYAGARKVEQ 36 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS-------CEEEEEESSGGG
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC-------CEEEEEECCccc
Confidence 6899999 7999999999999999 999999998654
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.075 Score=51.53 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=31.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..+|.|||+|..|.+.|..|+++| ++|+++++..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~G-------~~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKRG-------EEVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC-------CeEEEEeCCC
Confidence 357999999999999999999999 8999999863
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.078 Score=52.22 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|.|||+|..|.+.|..|+++| ++|+++.++..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G-------~~V~vlE~~~~ 34 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAG-------HEVEVFERLPI 34 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTT-------CEEEEECSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCC-------CceEEEeCCCC
Confidence 68999999999999999999999 89999998653
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.38 Score=48.48 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=49.5
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...++|.|+|.|.+|..-+..|.+.| .+|++++.+... + .+.+.+.+. .. + +.-.-+.
T Consensus 10 l~~~~vlVvGgG~va~~k~~~L~~~g-------a~V~vi~~~~~~----~-~~~l~~~~~-i~------~---~~~~~~~ 67 (457)
T 1pjq_A 10 LRDRDCLIVGGGDVAERKARLLLEAG-------ARLTVNALTFIP----Q-FTVWANEGM-LT------L---VEGPFDE 67 (457)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTT-------BEEEEEESSCCH----H-HHHHHTTTS-CE------E---EESSCCG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCc-------CEEEEEcCCCCH----H-HHHHHhcCC-EE------E---EECCCCc
Confidence 34578999999999999999999999 899999975421 1 233332110 10 0 0011122
Q ss_pred HHHhcCCCEEEEccCcch
Q 014757 139 ENAVKDANMLVFVTPHQF 156 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~ 156 (419)
+ .+.++|+||.++....
T Consensus 68 ~-~l~~~~lVi~at~~~~ 84 (457)
T 1pjq_A 68 T-LLDSCWLAIAATDDDT 84 (457)
T ss_dssp G-GGTTCSEEEECCSCHH
T ss_pred c-ccCCccEEEEcCCCHH
Confidence 3 3678999999987754
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.077 Score=51.80 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=31.5
Q ss_pred CeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|.|||+|..|.++|..|+++ | .+|+++++.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G-------~~V~v~E~~~~ 36 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPL-------WAIDIVEKNDE 36 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTT-------SEEEEECSSCT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCC-------CCEEEEECCCC
Confidence 5899999999999999999999 9 89999998754
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.083 Score=50.15 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=32.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+++|.|||+|.-|...|..|++.| ++|+++++++.
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g-------~~v~lie~~~~ 39 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRG-------LSFRFVDPLPE 39 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSSS
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCC-------CCEEEEeCCCC
Confidence 3468999999999999999999999 89999998653
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.081 Score=52.14 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=30.9
Q ss_pred cCeEEEECcchHHHHHHHHHHH---cCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIAS---NTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~---~G~~~~~~~~~V~l~~r~~ 101 (419)
|++|.|||+|..|...|..|++ .| ++|+++++++
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~g-------~~V~vie~~~ 37 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGSK-------ADVKVINKSR 37 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGGG-------SEEEEEESSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCC-------CeEEEEeCCC
Confidence 5789999999999999999999 88 8999999875
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.15 Score=49.75 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=31.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.-++|+|+|.|++|...|..|.+.| ..|.++|+++
T Consensus 174 ~GktV~I~G~GnVG~~~A~~l~~~G-------akVvvsD~~~ 208 (355)
T 1c1d_A 174 DGLTVLVQGLGAVGGSLASLAAEAG-------AQLLVADTDT 208 (355)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC-------CEEEEEeCCc
Confidence 4478999999999999999999999 8888888764
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.08 Score=51.74 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=30.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..|.|||+|..|.+.|..|+++| .+|+++++.+
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G-------~~V~vlE~~~ 37 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERG-------HRVLVLERHT 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-------CeEEEEeCCC
Confidence 57999999999999999999999 8999999865
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.084 Score=51.19 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=30.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
++|.|||+|..|.+.|..|+++| ++|+++++..
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G-------~~V~vie~~~ 36 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQG-------VKTLLVDAFD 36 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCC-------CeEEEEeCCC
Confidence 58999999999999999999999 8999999864
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.12 Score=51.83 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=32.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+||.|||.|..|.+.|..|++.| ++|+++|....
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G-------~~v~~~D~~~~ 39 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARG-------VTPRVMDTRMT 39 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTT-------CCCEEEESSSS
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCC-------CEEEEEECCCC
Confidence 3468999999999999999999999 99999997654
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.075 Score=50.27 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..+++|.|||+|.-|...|..|++.| ++|+++++.+
T Consensus 20 ~~~~~vvIIG~G~aGl~aA~~l~~~g-------~~v~vie~~~ 55 (338)
T 3itj_A 20 HVHNKVTIIGSGPAAHTAAIYLARAE-------IKPILYEGMM 55 (338)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTT-------CCCEEECCSS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCC-------CCEEEEecCC
Confidence 34568999999999999999999999 8999999843
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.11 Score=49.70 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=32.3
Q ss_pred CCCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 57 GVLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 57 ~~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+.+.+|+|.|.|+ |.+|..++..|++.| ++|++++|+..
T Consensus 23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~ 62 (343)
T 2b69_A 23 MEKDRKRILITGGAGFVGSHLTDKLMMDG-------HEVTVVDNFFT 62 (343)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCSS
T ss_pred cccCCCEEEEEcCccHHHHHHHHHHHHCC-------CEEEEEeCCCc
Confidence 4567789999997 999999999999999 99999998754
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.073 Score=53.70 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=30.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~~ 102 (419)
.+++|.|||+|.-|.+.|..|++. | ++|+++++++.
T Consensus 2 ~~~~VvIIGaG~aGl~aA~~L~~~~~g-------~~Vtvie~~~~ 39 (472)
T 3iwa_A 2 SLKHVVVIGAVALGPKAACRFKRLDPE-------AHVTMIDQASR 39 (472)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHCTT-------SEEEEECCC--
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhCcC-------CCEEEEECCCc
Confidence 357999999999999999999998 7 89999998765
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.11 Score=48.72 Aligned_cols=33 Identities=21% Similarity=-0.003 Sum_probs=30.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
+++|.|||+|.-|...|..|++.| ++|++++++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g-------~~v~lie~~ 47 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYM-------LKTLVIGET 47 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT-------CCEEEEESS
T ss_pred ccCEEEECccHHHHHHHHHHHHCC-------CcEEEEecc
Confidence 468999999999999999999999 899999985
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.1 Score=49.10 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=32.5
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+|||.|.|+ |.+|..++..|++.| ++|++.+|++.
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~ 42 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASG-------EEVTVLDDLRV 42 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-------CCEEEECCCSS
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCC-------CEEEEEecCCc
Confidence 34689999997 999999999999999 99999999765
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.24 Score=50.20 Aligned_cols=67 Identities=10% Similarity=0.224 Sum_probs=46.8
Q ss_pred CcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.++||.|||.|..|.+ +|..|.+.| ++|+++|..... ..+.+.+.|... ..-.+.
T Consensus 17 ~~~~i~viG~G~sG~s~~A~~l~~~G-------~~V~~~D~~~~~-----~~~~l~~~gi~~------------~~g~~~ 72 (475)
T 1p3d_A 17 RVQQIHFIGIGGAGMSGIAEILLNEG-------YQISGSDIADGV-----VTQRLAQAGAKI------------YIGHAE 72 (475)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHT-------CEEEEEESCCSH-----HHHHHHHTTCEE------------EESCCG
T ss_pred cCCEEEEEeecHHHHHHHHHHHHhCC-------CEEEEECCCCCH-----HHHHHHhCCCEE------------ECCCCH
Confidence 4678999999999997 999999999 999999986532 235565544321 111233
Q ss_pred HHHhcCCCEEEEc
Q 014757 139 ENAVKDANMLVFV 151 (419)
Q Consensus 139 ~ea~~~aDlVila 151 (419)
+ .+.++|+||+.
T Consensus 73 ~-~~~~a~~vv~s 84 (475)
T 1p3d_A 73 E-HIEGASVVVVS 84 (475)
T ss_dssp G-GGTTCSEEEEC
T ss_pred H-HcCCCCEEEEC
Confidence 2 35678888875
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.11 Score=49.46 Aligned_cols=43 Identities=28% Similarity=0.210 Sum_probs=32.2
Q ss_pred CCCCCCCCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 53 GSDDGVLHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 53 ~~~~~~~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+......||+|.|.| +|.+|..++..|++.| ++|++++|++.
T Consensus 13 ~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~ 56 (333)
T 2q1w_A 13 GLVPRGSHMKKVFITGICGQIGSHIAELLLERG-------DKVVGIDNFAT 56 (333)
T ss_dssp --------CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCSS
T ss_pred ceeeecCCCCEEEEeCCccHHHHHHHHHHHHCC-------CEEEEEECCCc
Confidence 3444456678999998 5999999999999999 99999999754
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.099 Score=49.97 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=30.9
Q ss_pred CCCCCCCCCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 51 SSGSDDGVLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 51 ~~~~~~~~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..........+|+|.|.|+ |.+|..++..|++.| ++|++++|+++
T Consensus 9 ~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G-------~~V~~~~r~~~ 54 (347)
T 4id9_A 9 HHSSGLVPRGSHMILVTGSAGRVGRAVVAALRTQG-------RTVRGFDLRPS 54 (347)
T ss_dssp ------------CEEEETTTSHHHHHHHHHHHHTT-------CCEEEEESSCC
T ss_pred CCCCcccccCCCEEEEECCCChHHHHHHHHHHhCC-------CEEEEEeCCCC
Confidence 3333445666789999997 999999999999999 99999999864
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.46 Score=46.20 Aligned_cols=92 Identities=12% Similarity=-0.022 Sum_probs=55.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+|.|+|+|.+|...++.+...| . .|...++++++ .+.+++.|.... +... ....+..+
T Consensus 193 ~~VlV~GaG~vG~~aiqlak~~G-------a~~Vi~~~~~~~~------~~~a~~lGa~~v------i~~~-~~~~~~~~ 252 (373)
T 1p0f_A 193 STCAVFGLGGVGFSAIVGCKAAG-------ASRIIGVGTHKDK------FPKAIELGATEC------LNPK-DYDKPIYE 252 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-------CSEEEEECSCGGG------HHHHHHTTCSEE------ECGG-GCSSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-------CCeEEEECCCHHH------HHHHHHcCCcEE------Eecc-cccchHHH
Confidence 58999999999999888887788 5 78888887765 455555553210 0000 00012222
Q ss_pred Hh-----cCCCEEEEccCc-chHHHHHHHHhccCCCC-cEEEEe
Q 014757 141 AV-----KDANMLVFVTPH-QFMEGICKRLVGKVNGD-VEAISL 177 (419)
Q Consensus 141 a~-----~~aDlVilavp~-~~~~~vl~~l~~~l~~~-tiivs~ 177 (419)
.+ ..+|+||-++.. ..+... ...++++ ..++.+
T Consensus 253 ~i~~~t~gg~Dvvid~~g~~~~~~~~----~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 253 VICEKTNGGVDYAVECAGRIETMMNA----LQSTYCGSGVTVVL 292 (373)
T ss_dssp HHHHHTTSCBSEEEECSCCHHHHHHH----HHTBCTTTCEEEEC
T ss_pred HHHHHhCCCCCEEEECCCCHHHHHHH----HHHHhcCCCEEEEE
Confidence 22 268999999986 334333 3445555 445443
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.097 Score=52.46 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=31.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCc--eEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHD--EVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~--~V~l~~r~~ 101 (419)
|++|+|||+|..|.+.|..|+++| + +|+++..+.
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G-------~~~~V~vlEa~~ 37 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAP-------CPPKVVLVESSE 37 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSS-------SCCEEEEECSSS
T ss_pred CceEEEECCcHHHHHHHHHHHhCC-------CCCcEEEEeCCC
Confidence 468999999999999999999999 8 999998754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.51 Score=45.92 Aligned_cols=92 Identities=11% Similarity=-0.022 Sum_probs=55.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+|.|+|+|.+|...++.+...| . .|...++++++ .+.+++.|.... +... ....+..+
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~G-------a~~Vi~~~~~~~~------~~~a~~lGa~~v------i~~~-~~~~~~~~ 256 (376)
T 1e3i_A 197 STCAVFGLGCVGLSAIIGCKIAG-------ASRIIAIDINGEK------FPKAKALGATDC------LNPR-ELDKPVQD 256 (376)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CSEEEEECSCGGG------HHHHHHTTCSEE------ECGG-GCSSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-------CCeEEEEcCCHHH------HHHHHHhCCcEE------Eccc-cccchHHH
Confidence 48999999999999888888888 6 79999888766 455555553210 0000 00012222
Q ss_pred Hh-----cCCCEEEEccCc-chHHHHHHHHhccCCCC-cEEEEe
Q 014757 141 AV-----KDANMLVFVTPH-QFMEGICKRLVGKVNGD-VEAISL 177 (419)
Q Consensus 141 a~-----~~aDlVilavp~-~~~~~vl~~l~~~l~~~-tiivs~ 177 (419)
.+ ..+|+||-++.. ..+... ...++++ ..++.+
T Consensus 257 ~v~~~~~~g~Dvvid~~G~~~~~~~~----~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 257 VITELTAGGVDYSLDCAGTAQTLKAA----VDCTVLGWGSCTVV 296 (376)
T ss_dssp HHHHHHTSCBSEEEESSCCHHHHHHH----HHTBCTTTCEEEEC
T ss_pred HHHHHhCCCccEEEECCCCHHHHHHH----HHHhhcCCCEEEEE
Confidence 22 258999999986 333333 3445555 444443
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.099 Score=51.17 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=31.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.++|.|||+|..|.++|..|+++| .+|+++++.+.
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G-------~~V~viE~~~~ 40 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQG-------HRVVVVEQARR 40 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC-------CcEEEEeCCCC
Confidence 358999999999999999999999 89999998754
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.088 Score=51.75 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=31.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+|.|||+|..|.+.|..|+++| .+|+++++.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G-------~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSG-------FKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT-------CCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCC-------CCEEEEeCCC
Confidence 58999999999999999999999 8999999875
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.083 Score=49.87 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=30.5
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+|||.|.|+ |.+|..++..|++.| ++|++.+|+.
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g-------~~v~~~~r~~ 37 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRG-------DVELVLRTRD 37 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCT-------TEEEECCCTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC-------CeEEEEecCc
Confidence 3579999995 999999999999999 8998887754
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.43 Score=47.03 Aligned_cols=94 Identities=12% Similarity=0.102 Sum_probs=57.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+|.|+|+|.+|...++.+...| . .|...++++++ .+.+++.|....... ...+..+
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~G-------a~~Vi~~~~~~~~------~~~~~~lGa~~vi~~---------~~~~~~~ 272 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHAG-------ASKVILSEPSEVR------RNLAKELGADHVIDP---------TKENFVE 272 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CSEEEEECSCHHH------HHHHHHHTCSEEECT---------TTSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-------CCEEEEECCCHHH------HHHHHHcCCCEEEcC---------CCCCHHH
Confidence 47999999999999888888888 6 88888887654 444555453210000 0012211
Q ss_pred ----Hh--cCCCEEEEccCcc--hHHHHHHHHhccCCCCcEEEEe
Q 014757 141 ----AV--KDANMLVFVTPHQ--FMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 141 ----a~--~~aDlVilavp~~--~~~~vl~~l~~~l~~~tiivs~ 177 (419)
.. ..+|+||-|+... ....+++.+...++++..++.+
T Consensus 273 ~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 273 AVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp HHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred HHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 11 2599999999876 4444444442333555555544
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.39 Score=49.43 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=30.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.||.|||+|.+|+.++..|+.+|. ..++++|.+.
T Consensus 33 ~~VlvvG~GGlGseiak~La~aGV------g~itlvD~D~ 66 (531)
T 1tt5_A 33 AHVCLINATATGTEILKNLVLPGI------GSFTIIDGNQ 66 (531)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC------SEEEEECCCB
T ss_pred CeEEEECcCHHHHHHHHHHHHcCC------CeEEEEeCCE
Confidence 689999999999999999999995 6899999764
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.52 E-value=0.11 Score=48.28 Aligned_cols=37 Identities=14% Similarity=0.289 Sum_probs=32.0
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+..++|.|.| +|.+|..++..|++.| ++|.+.+|+++
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G-------~~V~~~~r~~~ 66 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLK-------SKLVLWDINKH 66 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-------CEEEEEEcCHH
Confidence 4456899998 5899999999999999 89999999754
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.065 Score=51.72 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=31.6
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+.+++|.|||+|..|.+.|..|+ .| ++|+++++.+
T Consensus 6 ~~~~~dv~IIGaGi~Gls~A~~La-~G-------~~V~vlE~~~ 41 (381)
T 3nyc_A 6 HPIEADYLVIGAGIAGASTGYWLS-AH-------GRVVVLEREA 41 (381)
T ss_dssp EEEECSEEEECCSHHHHHHHHHHT-TT-------SCEEEECSSS
T ss_pred CCCcCCEEEECCcHHHHHHHHHHh-CC-------CCEEEEECCC
Confidence 344578999999999999999999 58 8999999874
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.12 Score=47.15 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecC-CCC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFE-ETL 103 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~-~~~ 103 (419)
+..++|.|.| +|.+|..++..|++.| ++|.+.+|+ ++.
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G-------~~V~~~~r~~~~~ 44 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAG-------AKVGLHGRKAPAN 44 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-------CEEEEEESSCCTT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-------CEEEEECCCchhh
Confidence 3446788888 5999999999999999 899999998 554
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.12 Score=47.73 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=30.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.+|.|||+|.-|...|..|++.| ++|++++++
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g-------~~v~lie~~ 34 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRAR-------KNILLVDAG 34 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT-------CCEEEEECC
T ss_pred CCEEEECCCHHHHHHHHHHHhCC-------CCEEEEeCC
Confidence 58999999999999999999999 899999964
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.09 Score=50.70 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=30.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+|.|||+|..|.+.|..|+++| .+|+++++..
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~G-------~~V~vle~~~ 35 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRAG-------LNVLMTDAHM 35 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHTT-------CCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-------CeEEEEecCC
Confidence 47999999999999999999999 8999999864
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.083 Score=50.99 Aligned_cols=38 Identities=13% Similarity=0.378 Sum_probs=32.9
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHc-CCCCCCCCc-eEEEEecCCCC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASN-TLRLSSFHD-EVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~-G~~~~~~~~-~V~l~~r~~~~ 103 (419)
+..|+|.|.| +|.+|..++..|++. | + +|++++|++..
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g-------~~~V~~~~r~~~~ 59 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTN-------AKKIIVYSRDELK 59 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCC-------CSEEEEEESCHHH
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCC-------CCEEEEEECChhh
Confidence 4457999999 599999999999999 8 6 99999997643
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.31 E-value=0.59 Score=45.43 Aligned_cols=92 Identities=8% Similarity=-0.031 Sum_probs=55.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+|.|+|+|.+|...++.+...| . .|...++++++ .+.+++.|.... +... ....+..+
T Consensus 193 ~~VlV~GaG~vG~~a~qla~~~G-------a~~Vi~~~~~~~~------~~~~~~lGa~~v------i~~~-~~~~~~~~ 252 (374)
T 2jhf_A 193 STCAVFGLGGVGLSVIMGCKAAG-------AARIIGVDINKDK------FAKAKEVGATEC------VNPQ-DYKKPIQE 252 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CSEEEEECSCGGG------HHHHHHTTCSEE------ECGG-GCSSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-------CCeEEEEcCCHHH------HHHHHHhCCceE------eccc-ccchhHHH
Confidence 58999999999999988888888 6 79899888766 455555453210 0000 00012222
Q ss_pred Hh-----cCCCEEEEccCc-chHHHHHHHHhccCCCC-cEEEEe
Q 014757 141 AV-----KDANMLVFVTPH-QFMEGICKRLVGKVNGD-VEAISL 177 (419)
Q Consensus 141 a~-----~~aDlVilavp~-~~~~~vl~~l~~~l~~~-tiivs~ 177 (419)
.+ ..+|+||-++.. ..+...++ .++++ ..++.+
T Consensus 253 ~~~~~~~~g~D~vid~~g~~~~~~~~~~----~l~~~~G~iv~~ 292 (374)
T 2jhf_A 253 VLTEMSNGGVDFSFEVIGRLDTMVTALS----CCQEAYGVSVIV 292 (374)
T ss_dssp HHHHHTTSCBSEEEECSCCHHHHHHHHH----HBCTTTCEEEEC
T ss_pred HHHHHhCCCCcEEEECCCCHHHHHHHHH----HhhcCCcEEEEe
Confidence 22 258999999986 34444443 34444 444443
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.12 Score=51.07 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=30.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
|++|.|||+|..|.+.|..|+++| ++|+++.++.
T Consensus 1 ~~dVvVIGaG~aGl~aA~~L~~~G-------~~V~vlE~~~ 34 (431)
T 3k7m_X 1 MYDAIVVGGGFSGLKAARDLTNAG-------KKVLLLEGGE 34 (431)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTT-------CCEEEECSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHcC-------CeEEEEecCC
Confidence 468999999999999999999999 8999998753
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.24 E-value=0.56 Score=45.17 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=55.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec--CC--
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD--PD-- 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~--~~-- 137 (419)
.+|.|+|+|.+|...++.+...| .+|.+.++++++ .+.+++.|.... +... .+
T Consensus 170 ~~VlV~GaG~vG~~a~qla~~~G-------a~Vi~~~~~~~~------~~~~~~lGa~~~----------~~~~~~~~~~ 226 (352)
T 1e3j_A 170 TTVLVIGAGPIGLVSVLAAKAYG-------AFVVCTARSPRR------LEVAKNCGADVT----------LVVDPAKEEE 226 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCHHH------HHHHHHTTCSEE----------EECCTTTSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-------CEEEEEcCCHHH------HHHHHHhCCCEE----------EcCcccccHH
Confidence 57999999999999988888888 778888887654 445555453210 0001 11
Q ss_pred --HHHHh-----cCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEe
Q 014757 138 --LENAV-----KDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 138 --~~ea~-----~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~ 177 (419)
..+.. ...|+||-++... .+...++ .++++..++.+
T Consensus 227 ~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~----~l~~~G~iv~~ 270 (352)
T 1e3j_A 227 SSIIERIRSAIGDLPNVTIDCSGNEKCITIGIN----ITRTGGTLMLV 270 (352)
T ss_dssp HHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHH----HSCTTCEEEEC
T ss_pred HHHHHHhccccCCCCCEEEECCCCHHHHHHHHH----HHhcCCEEEEE
Confidence 11112 3589999999864 3444443 34455455544
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=92.22 E-value=0.12 Score=51.87 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=31.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..|.|||+|..|...|..|+++| .+|+++++.+.
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G-------~~V~llEk~~~ 60 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEG-------ANVLLLDKGNK 60 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHCC-------CCEEEEECCCC
Confidence 47999999999999999999999 89999998764
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.15 Score=52.24 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=31.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHH---cCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIAS---NTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~---~G~~~~~~~~~V~l~~r~~ 101 (419)
.+.+|.|||+|..|.+.|..|++ .| .+|+++++.+
T Consensus 4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G-------~~V~liE~~~ 41 (538)
T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQ-------ANITLIESAA 41 (538)
T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSS-------CEEEEEECSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhcCCC-------CEEEEECCCC
Confidence 35689999999999999999999 99 8999999864
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.12 Score=51.52 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=32.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..+|.|||+|..|...|..|+++| .+|+++++.+..
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G-------~~V~llEk~~~~ 62 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRG-------RRVLVIDHARAP 62 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC-------CcEEEEeCCCCC
Confidence 358999999999999999999999 899999988754
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.15 Score=52.09 Aligned_cols=37 Identities=22% Similarity=0.118 Sum_probs=33.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+..++|.|||+|..|.++|..|+++| .+|.++++.+.
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~~G-------~~v~vlE~~~~ 45 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAG-------VEVVVLERLVE 45 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTT-------CCEEEEESCCC
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCC-------CCEEEEeCCCC
Confidence 34468999999999999999999999 89999998764
|
| >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.19 Score=54.36 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=56.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC---C------C--------cchHHHHHHhcCcCCccC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL---P------S--------GEKLTDVINRTNENVKYL 123 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~---~------~--------~~~l~~~i~~~g~~~~~~ 123 (419)
..||.|||+|.+|+.++..|+.+|. -.++++|.+.-. + . .+.+.+.+++. +
T Consensus 411 ~~~vlvvG~GglG~~~~~~L~~~Gv------g~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~--n---- 478 (805)
T 2nvu_B 411 TCKVLVIGAGGLGCELLKNLALSGF------RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDR--V---- 478 (805)
T ss_dssp TCCEEEECCSSHHHHHHHHHHTTTC------CEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH--S----
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC------CcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHH--C----
Confidence 3589999999999999999999995 589999986411 0 0 01122222221 1
Q ss_pred CCCcc---CCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHH
Q 014757 124 PGIKL---GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRL 164 (419)
Q Consensus 124 ~~~~l---~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l 164 (419)
|+..+ +..+ .....+.+.++|+||.|+-+...+..+.+.
T Consensus 479 p~~~v~~~~~~~--~~~~~~~~~~~d~vv~~~d~~~~r~~in~~ 520 (805)
T 2nvu_B 479 PNCNVVPHFNKI--QDFNDTFYRQFHIIVCGLDSIIARRWINGM 520 (805)
T ss_dssp TTCEEEEEESCG--GGSCHHHHHTCSEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEEeccc--cccHHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 22211 1111 111235577899999999887666666554
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.10 E-value=0.69 Score=44.90 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=55.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+|.|+|+|.+|...++.+...| . .|...++++++ .+.+++.|.... +... ....+..+
T Consensus 194 ~~VlV~GaG~vG~~a~qla~~~G-------a~~Vi~~~~~~~~------~~~~~~lGa~~v------i~~~-~~~~~~~~ 253 (374)
T 1cdo_A 194 STCAVFGLGAVGLAAVMGCHSAG-------AKRIIAVDLNPDK------FEKAKVFGATDF------VNPN-DHSEPISQ 253 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CSEEEEECSCGGG------HHHHHHTTCCEE------ECGG-GCSSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-------CCEEEEEcCCHHH------HHHHHHhCCceE------Eecc-ccchhHHH
Confidence 48999999999999988888888 6 79899888765 455555453210 0000 00012222
Q ss_pred Hh-----cCCCEEEEccCc-chHHHHHHHHhccCCCC-cEEEEe
Q 014757 141 AV-----KDANMLVFVTPH-QFMEGICKRLVGKVNGD-VEAISL 177 (419)
Q Consensus 141 a~-----~~aDlVilavp~-~~~~~vl~~l~~~l~~~-tiivs~ 177 (419)
.+ ..+|+||-++.. ..+... ...++++ ..++.+
T Consensus 254 ~~~~~~~~g~D~vid~~g~~~~~~~~----~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 254 VLSKMTNGGVDFSLECVGNVGVMRNA----LESCLKGWGVSVLV 293 (374)
T ss_dssp HHHHHHTSCBSEEEECSCCHHHHHHH----HHTBCTTTCEEEEC
T ss_pred HHHHHhCCCCCEEEECCCCHHHHHHH----HHHhhcCCcEEEEE
Confidence 22 258999999986 333333 3445555 444443
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.13 Score=51.40 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=32.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~~ 102 (419)
|.+++|.|||+|.-|...|..|++. | ++|+++++++.
T Consensus 1 M~~~~VvIIGgG~aGl~aA~~L~~~~~~-------~~V~vie~~~~ 39 (449)
T 3kd9_A 1 MSLKKVVIIGGGAAGMSAASRVKRLKPE-------WDVKVFEATEW 39 (449)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHHCTT-------SEEEEECSSSC
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHhCcC-------CCEEEEECCCc
Confidence 3468999999999999999999998 5 79999998763
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.16 Score=49.28 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=31.3
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
++|.|.|+ |.+|..++..|++.| ++|++++|+++
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g-------~~V~~~~r~~~ 63 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG-------YEVHGLIRRSS 63 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC-------CEEEEEecCCc
Confidence 58999996 999999999999999 99999999764
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.37 Score=46.46 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=56.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCC-----Ccc--C-CCeE
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPG-----IKL--G-KNVV 133 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~-----~~l--~-~~i~ 133 (419)
+||+|+|+|.+|..+.+.|.++. .+|..++--. +.+.++.-++....+-++... ..+ . ..++
T Consensus 1 ikVgInG~G~IGr~vlr~l~~~~-------~evvaind~~---~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~ 70 (331)
T 2g82_O 1 MKVGINGFGRIGRQVFRILHSRG-------VEVALINDLT---DNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIR 70 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-------CCEEEEECSS---CHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-------CEEEEEecCC---CHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEE
Confidence 48999999999999999988765 7777665321 122223333321111111100 011 1 1233
Q ss_pred ec--CCHHHH-hc--CCCEEEEccCcchHHHHHHHHhccCCCCc--EEEEee
Q 014757 134 AD--PDLENA-VK--DANMLVFVTPHQFMEGICKRLVGKVNGDV--EAISLI 178 (419)
Q Consensus 134 ~~--~~~~ea-~~--~aDlVilavp~~~~~~vl~~l~~~l~~~t--iivs~~ 178 (419)
+. .++++. .. ++|+||.|++.....+....... .|. +||+..
T Consensus 71 v~~~~dp~~l~w~~~gvDiV~estG~~~s~e~a~~~l~---aGakkvVIsap 119 (331)
T 2g82_O 71 ATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLE---GGAKKVIITAP 119 (331)
T ss_dssp EECCSSGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHH---TTCSEEEESSC
T ss_pred EEecCChhhCcccccCCCEEEECCCchhhHHHHHHHHH---CCCCEEEECCC
Confidence 43 255442 22 68999999998655555443332 344 777654
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.34 Score=50.05 Aligned_cols=45 Identities=4% Similarity=-0.040 Sum_probs=38.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT 116 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~ 116 (419)
...++|.|+|.|.+|..++..|.+.| ++|.+++.+++. ++.+...
T Consensus 125 ~~~~hviI~G~g~~g~~la~~L~~~~-------~~vvvid~~~~~------~~~~~~~ 169 (565)
T 4gx0_A 125 DTRGHILIFGIDPITRTLIRKLESRN-------HLFVVVTDNYDQ------ALHLEEQ 169 (565)
T ss_dssp TCCSCEEEESCCHHHHHHHHHTTTTT-------CCEEEEESCHHH------HHHHHHS
T ss_pred ccCCeEEEECCChHHHHHHHHHHHCC-------CCEEEEECCHHH------HHHHHHh
Confidence 34568999999999999999999999 899999988765 5666654
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.62 Score=45.22 Aligned_cols=92 Identities=7% Similarity=-0.016 Sum_probs=55.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+|.|+|+|.+|...++.+...| . .|+..++++++ .+.+++.|.... +... ....+..+
T Consensus 192 ~~VlV~GaG~vG~~avqla~~~G-------a~~Vi~~~~~~~~------~~~~~~lGa~~v------i~~~-~~~~~~~~ 251 (373)
T 2fzw_A 192 SVCAVFGLGGVGLAVIMGCKVAG-------ASRIIGVDINKDK------FARAKEFGATEC------INPQ-DFSKPIQE 251 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-------CSEEEEECSCGGG------HHHHHHHTCSEE------ECGG-GCSSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-------CCeEEEEcCCHHH------HHHHHHcCCceE------eccc-cccccHHH
Confidence 48999999999999988888888 5 79999888765 455555453210 0000 00012222
Q ss_pred Hh-----cCCCEEEEccCc-chHHHHHHHHhccCCCC-cEEEEe
Q 014757 141 AV-----KDANMLVFVTPH-QFMEGICKRLVGKVNGD-VEAISL 177 (419)
Q Consensus 141 a~-----~~aDlVilavp~-~~~~~vl~~l~~~l~~~-tiivs~ 177 (419)
.+ ..+|+||-++.. ..+... ...++++ ..++.+
T Consensus 252 ~v~~~~~~g~D~vid~~g~~~~~~~~----~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 252 VLIEMTDGGVDYSFECIGNVKVMRAA----LEACHKGWGVSVVV 291 (373)
T ss_dssp HHHHHTTSCBSEEEECSCCHHHHHHH----HHTBCTTTCEEEEC
T ss_pred HHHHHhCCCCCEEEECCCcHHHHHHH----HHhhccCCcEEEEE
Confidence 22 258999999986 333333 3445555 455443
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=5 Score=37.65 Aligned_cols=161 Identities=12% Similarity=0.154 Sum_probs=94.0
Q ss_pred CCeEecCCHHHHhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEE-
Q 014757 130 KNVVADPDLENAVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVL- 206 (419)
Q Consensus 130 ~~i~~~~~~~ea~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~- 206 (419)
.++++++|-.|+++++|++|+.+|- .....+.+.+.+++++|.+|...=+ ++ ...+...++. ++. +..+.
T Consensus 127 aGVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCT-ip-----p~~ly~~le~-l~R~DvgIsS 199 (358)
T 2b0j_A 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACT-IP-----TTKFAKIFKD-LGREDLNITS 199 (358)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSS-SC-----HHHHHHHHHH-TTCTTSEEEE
T ss_pred cCcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccC-CC-----HHHHHHHHHH-hCcccCCeec
Confidence 4678888888899999999999997 5588899999999999999875421 32 2345566654 443 23332
Q ss_pred eCcchHHHHHhcCceeEEEeec-CCHHHHHHHHHHhCCCCcEEEE-cCcHHHHH--HHHHHHHHHHHHHHhhhcC----C
Q 014757 207 MGANIANEIAVEKFSEATVGYR-DNREIAEKWVQLFSTPYFMVTA-VQDVEGVE--LCGTLKNVVAIAAGFVDGL----E 278 (419)
Q Consensus 207 ~gp~~a~e~~~g~~~~~~~~~~-~~~~~~~~l~~ll~~~g~~~~~-~~di~~~e--~~~al~Ni~a~~~g~~~~~----~ 278 (419)
.-|..+-.. .|+ ...+.. .+++.++++.++-++.+...+. ..|..+.- ++.++--+. ..|+.+-. +
T Consensus 200 ~HPaaVPgt-~Gq---~~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~DMgs~vTAv~--~AGiL~Y~~~vtk 273 (358)
T 2b0j_A 200 YHPGCVPEM-KGQ---VYIAEGYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCDMCSAVTATV--YAGLLAYRDAVTK 273 (358)
T ss_dssp CBCSSCTTT-CCC---EEEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHSTTHHHHHHH--HHHHHHHHHHHHT
T ss_pred cCCCCCCCC-CCc---cccccccCCHHHHHHHHHHHHHhCCCeEecchhhccchhhhHHHHHHHH--HHHHHHHHHHHHH
Confidence 223221111 233 233322 3789999999998877655544 33433211 122221111 11332211 2
Q ss_pred -CCc--cHHHHHHHHHHHHHHHHHHHhc
Q 014757 279 -MGN--NTKAAIMRIGLREMRAFSKLLF 303 (419)
Q Consensus 279 -~~~--n~~~~l~~~~~~E~~~la~a~g 303 (419)
++. .+.-..+...+.-+..+.+..|
T Consensus 274 IlgAP~~mie~q~~esL~tiasLve~~G 301 (358)
T 2b0j_A 274 ILGAPADFAQMMADEALTQIHNLMKEKG 301 (358)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222 2233456667788888888885
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=1.3 Score=42.52 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=52.6
Q ss_pred cCeEEEECcc--hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH----hcCcCCccCCCCccCCCeEe
Q 014757 61 KSKVTVVGSG--NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN----RTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 61 ~mkI~IIGaG--~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~----~~g~~~~~~~~~~l~~~i~~ 134 (419)
-.||+++|=| +|..+++..++.-| .+|++.....-.. .+++.+..+ +.|. .+..
T Consensus 155 gl~ia~vGD~~~~va~Sl~~~~~~~G-------~~v~~~~P~~~~p-~~~~~~~~~~~a~~~G~------------~v~~ 214 (333)
T 1duv_G 155 EMTLVYAGDARNNMGNSMLEAAALTG-------LDLRLVAPQACWP-EAALVTECRALAQQNGG------------NITL 214 (333)
T ss_dssp GCEEEEESCTTSHHHHHHHHHHHHHC-------CEEEEECCGGGCC-CHHHHHHHHHHHHHTTC------------EEEE
T ss_pred CcEEEEECCCccchHHHHHHHHHHcC-------CEEEEECCcccCC-CHHHHHHHHHHHHHcCC------------eEEE
Confidence 4689999985 99999999999999 8999988643211 122333332 2231 3567
Q ss_pred cCCHHHHhcCCCEEEEccC
Q 014757 135 DPDLENAVKDANMLVFVTP 153 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp 153 (419)
++|++++++++|+|..-+=
T Consensus 215 ~~d~~eav~~aDvvytd~w 233 (333)
T 1duv_G 215 TEDVAKGVEGADFIYTDVW 233 (333)
T ss_dssp ESCHHHHHTTCSEEEECCS
T ss_pred EECHHHHhCCCCEEEeCCc
Confidence 8999999999999988543
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=91.90 E-value=1.4 Score=42.38 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=52.7
Q ss_pred cCeEEEECcc--hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH----hcCcCCccCCCCccCCCeEe
Q 014757 61 KSKVTVVGSG--NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN----RTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 61 ~mkI~IIGaG--~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~----~~g~~~~~~~~~~l~~~i~~ 134 (419)
-.||+++|=| +|..++...++.-| .+|++.....-.. .+++.+..+ +.|. .+..
T Consensus 155 gl~va~vGD~~~~va~Sl~~~~~~~G-------~~v~~~~P~~~~p-~~~~~~~~~~~a~~~G~------------~v~~ 214 (335)
T 1dxh_A 155 DISYAYLGDARNNMGNSLLLIGAKLG-------MDVRIAAPKALWP-HDEFVAQCKKFAEESGA------------KLTL 214 (335)
T ss_dssp GCEEEEESCCSSHHHHHHHHHHHHTT-------CEEEEECCGGGSC-CHHHHHHHHHHHHHHTC------------EEEE
T ss_pred CeEEEEecCCccchHHHHHHHHHHcC-------CEEEEECCcccCC-CHHHHHHHHHHHHHcCC------------eEEE
Confidence 4689999986 99999999999999 8999988643211 122333332 2331 3567
Q ss_pred cCCHHHHhcCCCEEEEccC
Q 014757 135 DPDLENAVKDANMLVFVTP 153 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp 153 (419)
++|++++++++|+|..-+=
T Consensus 215 ~~d~~eav~~aDvvytd~w 233 (335)
T 1dxh_A 215 TEDPKEAVKGVDFVHTDVW 233 (335)
T ss_dssp ESCHHHHTTTCSEEEECCC
T ss_pred EeCHHHHhCCCCEEEeCCc
Confidence 8999999999999988443
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.15 Score=49.09 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=31.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+++|.|||+|.-|...|..|++.| ++|+++++.+
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g-------~~v~lie~~~ 47 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNN-------ISCRIIESMP 47 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC-------CCEEEEecCC
Confidence 3468999999999999999999999 8999999865
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=0.13 Score=53.03 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=32.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
...+|.|||+|..|.++|..|++.| .+|+++++.+.
T Consensus 25 ~~~dVlIVGaGpaGl~~A~~La~~G-------~~V~vlEr~~~ 60 (549)
T 2r0c_A 25 IETDVLILGGGPVGMALALDLAHRQ-------VGHLVVEQTDG 60 (549)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC-------CCEEEEeCCCC
Confidence 3457999999999999999999999 89999998764
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=0.18 Score=47.88 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=32.7
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..|+|.|.|+ |.+|..++..|++.| ++|++.+|+++.
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G-------~~V~~~~r~~~~ 39 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKG-------YEVYGADRRSGE 39 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEECSCCST
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-------CEEEEEECCCcc
Confidence 3478999996 999999999999999 999999998754
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=91.83 E-value=1.4 Score=41.90 Aligned_cols=72 Identities=17% Similarity=0.076 Sum_probs=51.8
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH----hcCcCCccCCCCccCCCeEec
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN----RTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~----~~g~~~~~~~~~~l~~~i~~~ 135 (419)
-.||+++| .+++..+++..++.-| .+|++.....-.. .+.+.+..+ +.|. .+..+
T Consensus 146 gl~va~vGD~~~va~Sl~~~~~~~G-------~~v~~~~P~~~~~-~~~~~~~~~~~a~~~g~------------~~~~~ 205 (307)
T 3tpf_A 146 IAKVAFIGDSNNMCNSWLITAAILG-------FEISIAMPKNYKI-SPEIWEFAMKQALISGA------------KISLG 205 (307)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHT-------CEEEEECCTTCCC-CHHHHHHHHHHHHHHTC------------EEEEE
T ss_pred CCEEEEEcCCCccHHHHHHHHHHcC-------CEEEEECCCccCC-CHHHHHHHHHHHHHcCC------------eEEEE
Confidence 46899999 5789999999999989 8999988653221 122223222 2231 35678
Q ss_pred CCHHHHhcCCCEEEEcc
Q 014757 136 PDLENAVKDANMLVFVT 152 (419)
Q Consensus 136 ~~~~ea~~~aDlVilav 152 (419)
+|++++++++|+|..-+
T Consensus 206 ~d~~eav~~aDvvyt~~ 222 (307)
T 3tpf_A 206 YDKFEALKDKDVVITDT 222 (307)
T ss_dssp SCHHHHHTTCSEEEECC
T ss_pred cCHHHHhcCCCEEEecC
Confidence 99999999999998876
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=91.80 E-value=0.51 Score=45.59 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=54.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC----
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP---- 136 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~---- 136 (419)
.+|.|+|+|.+|...++.+...| . +|.+.++++++ .+.+++.|... +....
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~G-------a~~Vi~~~~~~~~------~~~a~~lGa~~-----------vi~~~~~~~ 228 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMG-------AAQVVVTDLSATR------LSKAKEIGADL-----------VLQISKESP 228 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CSEEEEEESCHHH------HHHHHHTTCSE-----------EEECSSCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-------CCEEEEECCCHHH------HHHHHHhCCCE-----------EEcCccccc
Confidence 47999999999999888887788 6 89999887654 44555545321 00111
Q ss_pred -CHHHHh-----cCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEe
Q 014757 137 -DLENAV-----KDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 137 -~~~ea~-----~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..+.+ ..+|+||-++... .+...+ ..++++..++.+
T Consensus 229 ~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~----~~l~~~G~iv~~ 272 (356)
T 1pl8_A 229 QEIARKVEGQLGCKPEVTIECTGAEASIQAGI----YATRSGGTLVLV 272 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEECSCCHHHHHHHH----HHSCTTCEEEEC
T ss_pred chHHHHHHHHhCCCCCEEEECCCChHHHHHHH----HHhcCCCEEEEE
Confidence 111111 3689999999864 344444 334455555544
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.33 Score=49.39 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=46.7
Q ss_pred CcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.++||.|||.|..|.+ +|..|.+.| ++|+++|..... ..+.+.+.|... ..-.+.
T Consensus 18 ~~~~v~viGiG~sG~s~~A~~l~~~G-------~~V~~~D~~~~~-----~~~~l~~~gi~~------------~~g~~~ 73 (491)
T 2f00_A 18 RVRHIHFVGIGGAGMGGIAEVLANEG-------YQISGSDLAPNP-----VTQQLMNLGATI------------YFNHRP 73 (491)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHTT-------CEEEEECSSCCH-----HHHHHHHTTCEE------------ESSCCG
T ss_pred cCCEEEEEEcCHHHHHHHHHHHHhCC-------CeEEEECCCCCH-----HHHHHHHCCCEE------------ECCCCH
Confidence 4578999999999997 999999999 999999986532 234565544321 111223
Q ss_pred HHHhcCCCEEEEc
Q 014757 139 ENAVKDANMLVFV 151 (419)
Q Consensus 139 ~ea~~~aDlVila 151 (419)
+ .+.++|+||+.
T Consensus 74 ~-~~~~a~~vv~s 85 (491)
T 2f00_A 74 E-NVRDASVVVVS 85 (491)
T ss_dssp G-GGTTCSEEEEC
T ss_pred H-HcCCCCEEEEC
Confidence 2 35678888875
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.19 Score=47.50 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=31.5
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
||+|.|.| +|.+|..++..|++.| ++|++++|+...
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~ 37 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEG-------LSVVVVDNLQTG 37 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCSSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-------CEEEEEeCCCcC
Confidence 68999998 5999999999999999 999999987543
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=91.76 E-value=0.13 Score=50.12 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=30.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+|.|||+|..|.++|..|++.| ++|+++++.+
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G-------~~v~v~E~~~ 35 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAG-------IDNVILERQT 35 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT-------CCEEEECSSC
T ss_pred ccEEEECCCHHHHHHHHHHHHCC-------CCEEEEeCCC
Confidence 47999999999999999999999 8999999875
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=91.75 E-value=0.12 Score=51.11 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=32.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..+|.|||+|..|...|..|+++| .+|.++++.+..
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G-------~~V~vlEk~~~~ 39 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLG-------KSVTVFDNGKKI 39 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHhCC-------CCEEEEeCCCCC
Confidence 357999999999999999999999 899999987643
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.16 Score=52.70 Aligned_cols=39 Identities=23% Similarity=0.165 Sum_probs=33.7
Q ss_pred CCCCcCeEEEECcchHHHHHHHHHHHc--CCCCCCCCceEEEEecCCC
Q 014757 57 GVLHKSKVTVVGSGNWGSVASKLIASN--TLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 57 ~~~~~mkI~IIGaG~mG~~lA~~La~~--G~~~~~~~~~V~l~~r~~~ 102 (419)
+.+.+++|.|||+|.-|.+.|..|++. | ++|+++++++.
T Consensus 32 ~~~~~~~VvIIGgG~AGl~aA~~L~~~~~g-------~~V~vie~~~~ 72 (588)
T 3ics_A 32 DRWGSRKIVVVGGVAGGASVAARLRRLSEE-------DEIIMVERGEY 72 (588)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHHCSS-------SEEEEECSSSC
T ss_pred CcccCCCEEEECCcHHHHHHHHHHHhhCcC-------CCEEEEECCCC
Confidence 345678999999999999999999998 6 89999998875
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.21 Score=47.49 Aligned_cols=40 Identities=15% Similarity=0.036 Sum_probs=34.3
Q ss_pred CCCCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 56 DGVLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 56 ~~~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
......|+|.|.|+ |.+|..++..|++.| ++|++.+|+..
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g-------~~V~~~~r~~~ 55 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQG-------HEILVIDNFAT 55 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGT-------CEEEEEECCSS
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCC-------CEEEEEECCCc
Confidence 34455589999996 999999999999999 99999999654
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=91.68 E-value=0.18 Score=45.68 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=30.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
..+|.|||+|..|...|..|++.| .+|+++++.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g-------~~v~lie~~ 35 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKG-------VRVGLLTQS 35 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT-------CCEEEEESC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC-------CCEEEEecC
Confidence 357999999999999999999999 899999986
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.14 Score=50.97 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=31.9
Q ss_pred cCeEEEECcchHHHHHHHHHHH---cCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIAS---NTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~---~G~~~~~~~~~V~l~~r~~~ 102 (419)
|++|.|||+|..|...|..|++ .| ++|+++++++.
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g-------~~Vtlie~~~~ 41 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSG-------HEVTLISANDY 41 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGG-------SEEEEECSSSE
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCc-------CEEEEEeCCCC
Confidence 5799999999999999999999 78 89999998764
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.17 Score=51.66 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=33.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..++|.|||+|..|.++|..|+++| .+|+++++.+..
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G-------~~v~vlE~~~~~ 47 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGG-------VDVMVLEQLPQR 47 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT-------CCEEEEESCSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC-------CCEEEEECCCCC
Confidence 4468999999999999999999999 899999987643
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.83 Score=41.81 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=32.9
Q ss_pred CCCcCeEEEECc-c-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 58 VLHKSKVTVVGS-G-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIGa-G-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+..++|.|.|+ | .+|..++..|++.| ++|.+.+|+.+.
T Consensus 19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G-------~~V~~~~r~~~~ 59 (266)
T 3o38_A 19 LLKGKVVLVTAAAGTGIGSTTARRALLEG-------ADVVISDYHERR 59 (266)
T ss_dssp TTTTCEEEESSCSSSSHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHCC-------CEEEEecCCHHH
Confidence 344568999998 8 59999999999999 899999998643
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.14 Score=48.23 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=31.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+.+|.|||+|.-|...|..|++.| ++|+++++++.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g-------~~v~lie~~~~ 41 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQ-------ASVKIIESLPQ 41 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSS
T ss_pred cceEEEECCCHHHHHHHHHHHHCC-------CCEEEEEcCCC
Confidence 468999999999999999999999 89999998753
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.15 Score=47.62 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=30.9
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEE-EecC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRM-WVFE 100 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l-~~r~ 100 (419)
.+++|.|||+|.-|...|..|++.| ++|++ ++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g-------~~v~li~e~~ 37 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGG-------LKNVVMFEKG 37 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHT-------CSCEEEECSS
T ss_pred CCceEEEECCCHHHHHHHHHHHHCC-------CCeEEEEeCC
Confidence 4679999999999999999999999 89999 8863
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.21 Score=50.29 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=32.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..++|+|||+|..|.+.|..|+++| ++|+++.+...
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g-------~~v~v~E~~~~ 45 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAG-------YKVTVLEARTR 45 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-------CCEEEEeccCC
Confidence 3568999999999999999999999 89999987653
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=1.1 Score=41.27 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=32.3
Q ss_pred CCcCeEEEECc---chHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGS---GNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGa---G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+..++|.|.|+ |.+|.++|..|++.| ++|.+.+|+++
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G-------~~V~~~~r~~~ 43 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQG-------ATLAFTYLNES 43 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT-------CEEEEEESSTT
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCC-------CEEEEEeCCHH
Confidence 34467999997 699999999999999 89999999875
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.24 Score=44.81 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=31.5
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|++|.|.|+ |.+|..++..|++.| ++|.+.+|+++.
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g-------~~V~~~~r~~~~ 37 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAG-------HTVIGIDRGQAD 37 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSSSS
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCC-------CEEEEEeCChhH
Confidence 457999986 999999999999999 899999998654
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=91.37 E-value=2.5 Score=40.29 Aligned_cols=71 Identities=23% Similarity=0.115 Sum_probs=52.1
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH----hcCcCCccCCCCccCCCeEecC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN----RTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~----~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
.||+++|= +++..+++..++.-| .+|++.....-.. .+++.+.++ +.|. .+..++
T Consensus 156 l~va~vGD~~rva~Sl~~~~~~~g-------~~v~~~~P~~~~~-~~~~~~~~~~~a~~~g~------------~~~~~~ 215 (315)
T 1pvv_A 156 VKVVYVGDGNNVAHSLMIAGTKLG-------ADVVVATPEGYEP-DEKVIKWAEQNAAESGG------------SFELLH 215 (315)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTT-------CEEEEECCTTCCC-CHHHHHHHHHHHHHHTC------------EEEEES
T ss_pred cEEEEECCCcchHHHHHHHHHHCC-------CEEEEECCccccC-CHHHHHHHHHHHHHcCC------------eEEEEe
Confidence 68999995 899999999999999 8999988654221 222333333 2231 356789
Q ss_pred CHHHHhcCCCEEEEcc
Q 014757 137 DLENAVKDANMLVFVT 152 (419)
Q Consensus 137 ~~~ea~~~aDlVilav 152 (419)
|++++++++|+|+.-+
T Consensus 216 d~~eav~~aDvvy~~~ 231 (315)
T 1pvv_A 216 DPVKAVKDADVIYTDV 231 (315)
T ss_dssp CHHHHTTTCSEEEECC
T ss_pred CHHHHhCCCCEEEEcc
Confidence 9999999999998854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 419 | ||||
| d1n1ea1 | 160 | a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydro | 5e-30 | |
| d1n1ea2 | 189 | c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen | 6e-29 | |
| d1txga1 | 155 | a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydro | 4e-27 | |
| d1txga2 | 180 | c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen | 8e-16 | |
| d1vjta1 | 193 | c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM07 | 7e-05 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 4e-04 |
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 160 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 111 bits (279), Expect = 5e-30
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 7/149 (4%)
Query: 253 DVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFF 312
D G E+ +KNV+AI +G +GL MG N +AA++ GL E+R + S F
Sbjct: 2 DTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTA--ALGGDGSAVF 59
Query: 313 ESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLS 372
G+ DL TC +R + E + +GV+TA + +
Sbjct: 60 GLAGLGDLQLTCSSELSRNFTVGKKLG---KGLPIEEIQRTSKAVAEGVATADPLMRLAK 116
Query: 373 HRGWLELFPLFATVHEICVGHLPPSAIVE 401
PL ++EI P +
Sbjct: 117 QLKV--KMPLCHQIYEIVYKKKNPRDALA 143
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 109 bits (274), Expect = 6e-29
Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 24/203 (11%)
Query: 56 DGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR 115
D +L+ +K V GSG +G+ + +++ EV +W E+ ++N
Sbjct: 2 DELLYLNKAVVFGSGAFGTALAMVLSKKC-------REVCVWHMN------EEEVRLVNE 48
Query: 116 TNENVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKV-----NG 170
ENV +L G++L N+ D+E A A +++FV P QF+ G ++ G +
Sbjct: 49 KRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK 108
Query: 171 DVEAISLIKGMEVKREGPCMISTLISEQLGVSCC-VLMGANIANEIAVEKFSEATVGYRD 229
V + KG+E R + +I E L VL G + A E+A F+ ++ D
Sbjct: 109 QVPVLVCTKGIE--RSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASAD 166
Query: 230 NREIAEKWVQLFST--PYFMVTA 250
+A + ++ ST F+ A
Sbjct: 167 -INVARRLQRIMSTGDRSFVCWA 188
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 155 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 103 bits (258), Expect = 4e-27
Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 10/154 (6%)
Query: 253 DVEGVELCGTLKNVVAIAAGFVDGLEMGNN-----TKAAIMRIGLREMRAFSKLLFSSVK 307
D+ G E+ LKNV +IA ++ G E N K I + EM ++L
Sbjct: 1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGG--D 58
Query: 308 DSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREV 367
T F G DLI T GGRN + E K + E E ++G TA +
Sbjct: 59 RETAFGLSGFGDLIATFRGGRNGMLGELLGKGLSIDEAME-ELERRGVGVVEGYKTAEKA 117
Query: 368 YEVLSHRGWLELFPLFATVHEICVGHLPPSAIVE 401
Y + S + L +++ + L ++
Sbjct: 118 YRLSSKIN-AD-TKLLDSIYRVLYEGLKVEEVLF 149
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 73.2 bits (178), Expect = 8e-16
Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 15/188 (7%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
V+++G+G GS S + N +EVR+W E +
Sbjct: 2 IVSILGAGAMGSALSVPLVDN-------GNEVRIWGTEF-----DTEILKSISAGREHPR 49
Query: 123 LPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182
L G + LE +++A +++ + + R++ + + ++
Sbjct: 50 LGVKLNGVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLID 109
Query: 183 VKREGPCMISTLISEQLGVS--CCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQL 240
+ + + + + G IA E+A + A K ++
Sbjct: 110 FDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPS-ESSANKMKEI 168
Query: 241 FSTPYFMV 248
F T YF V
Sbjct: 169 FETEYFGV 176
|
| >d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Putative alpha-glucosidase TM0752 species: Thermotoga maritima [TaxId: 2336]
Score = 41.3 bits (96), Expect = 7e-05
Identities = 31/211 (14%), Positives = 57/211 (27%), Gaps = 32/211 (15%)
Query: 60 HKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNE 118
H K++++G+G+ + T LS + M E +L
Sbjct: 1 HHMKISIIGAGSVRFALQLVGDIAQTEELSREDTHIYMMDVHE-----RRLNAS---YIL 52
Query: 119 NVKYLPGIKLGKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178
KY+ + +V L+ A+ A+ ++ + +V +
Sbjct: 53 ARKYVEELNSPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHD--SGSQRWDEVTKVGEK 110
Query: 179 KGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEATVGYRDNREIAEKWV 238
G E VS + + EIAEK
Sbjct: 111 HGYY--------RGIDSQELNMVST-------------YTYVLSSYPDMKLALEIAEKMK 149
Query: 239 QLFSTPYFMVTAVQDVEGVELCGTLKNVVAI 269
++ Y M TA E + +
Sbjct: 150 KMAPKAYLMQTANPVFEITQAVRRWTGANIV 180
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 39.1 bits (90), Expect = 4e-04
Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 24/191 (12%)
Query: 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKY 122
V+G GN G + +A V W + + I +
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQ-------SVLAWDID------AQRIKEIQDRGAIIAE 49
Query: 123 LPGIKL-GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG- 180
PG+ + D+ AVKDA++++ V P I + ++ I L G
Sbjct: 50 GPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQ-LIILNPGA 108
Query: 181 -------MEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAV-EKFSEATVGYRDNRE 232
++ RE T+ + C A+ A +
Sbjct: 109 TGGALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGW 168
Query: 233 IAEKWVQLFST 243
E+ +
Sbjct: 169 ALEQIGSVLPQ 179
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 419 | |||
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.95 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.91 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 99.91 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 99.9 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.73 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.71 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.71 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.68 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.67 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.65 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.61 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.52 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.51 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.45 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.45 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.41 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.41 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.4 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.37 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.31 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.24 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.94 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.85 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.79 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.65 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.61 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.58 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.52 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.44 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.42 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.4 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.39 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.36 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.35 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.31 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.25 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.23 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.22 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.17 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.17 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.17 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.17 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.14 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.14 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.12 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.11 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 98.08 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.08 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.07 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.06 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.06 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.06 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.05 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.02 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.99 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.98 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.92 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.9 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.89 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.89 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.88 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.87 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.85 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.79 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.79 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 97.76 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.72 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.67 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.64 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.62 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.59 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.58 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.54 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.53 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.45 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.41 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.35 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.34 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.3 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.3 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.3 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.27 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.19 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.16 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.14 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 97.14 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.13 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.1 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.04 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.03 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.02 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.99 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.98 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.98 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 96.94 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.89 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.88 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.83 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 96.82 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.75 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.69 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.59 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.58 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.47 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.44 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.39 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.3 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 96.25 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.21 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.21 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.2 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.15 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.11 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.05 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 96.0 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.96 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.94 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.93 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.91 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.87 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.73 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.73 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.72 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.7 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.59 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.58 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.54 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.49 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.47 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.44 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.43 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.43 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.35 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.23 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.17 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 95.17 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.16 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.12 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.06 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.04 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.0 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 95.0 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.0 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.9 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.87 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.86 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.85 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 94.76 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.74 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 94.71 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.65 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.64 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.61 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.56 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.55 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.52 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.5 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.49 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.43 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.28 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.28 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.26 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.25 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.17 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 94.13 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.13 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.1 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.04 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 93.98 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.98 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 93.77 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.74 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.73 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.46 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.39 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 93.31 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.27 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.15 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 93.12 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 93.0 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 92.73 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.69 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 92.66 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 92.63 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 92.6 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.52 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.46 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 92.19 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 92.15 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 92.07 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 91.95 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.56 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 91.51 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 91.51 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.46 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 91.28 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.16 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 91.12 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 90.75 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 90.75 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 90.68 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 90.54 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 90.54 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 90.4 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.34 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 90.04 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.9 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 89.86 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.82 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 89.75 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 89.74 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.65 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 89.37 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 89.05 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 89.04 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 89.02 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 88.98 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.9 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 88.83 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 88.78 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 88.74 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 88.72 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 88.63 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 88.33 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 88.31 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 88.19 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 88.16 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 88.07 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 88.06 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 88.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 87.72 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 87.71 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 87.6 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 87.38 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 87.3 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 87.2 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.06 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 86.87 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 86.86 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 86.73 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 86.71 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 86.48 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 86.47 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 86.45 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 86.44 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 86.35 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 86.32 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 86.16 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 86.11 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 86.08 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 86.07 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 85.93 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 85.67 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 85.65 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 85.63 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 85.38 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 85.36 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 85.2 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 85.18 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 85.09 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 84.92 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 84.84 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 84.65 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 84.32 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 84.31 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 84.18 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 84.13 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 84.08 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 84.08 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 84.08 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 83.78 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 83.65 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 83.55 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 83.54 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 83.37 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 83.05 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 82.98 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 82.88 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 82.83 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 82.8 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 82.67 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 82.49 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.49 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 82.4 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 82.4 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 82.26 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 82.26 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 82.24 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 82.18 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 82.1 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 82.01 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 81.98 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 81.89 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.85 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 81.85 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 81.78 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 81.68 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 81.64 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 81.62 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 81.6 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.47 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 81.37 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 81.21 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 81.16 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 81.03 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 80.85 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 80.82 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 80.45 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 80.35 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 80.02 |
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.95 E-value=1.6e-28 Score=220.52 Aligned_cols=177 Identities=28% Similarity=0.460 Sum_probs=158.6
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.+.|+||+|||+|+||+++|..|+++| |+|++|+|+++. ++.|++.+.++.|+|++.+|.++.++++
T Consensus 4 ~~~m~KI~ViGaG~wGtAlA~~La~~g-------~~V~l~~r~~~~------~~~i~~~~~n~~yl~~~~l~~~i~~t~~ 70 (189)
T d1n1ea2 4 LLYLNKAVVFGSGAFGTALAMVLSKKC-------REVCVWHMNEEE------VRLVNEKRENVLFLKGVQLASNITFTSD 70 (189)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHTTE-------EEEEEECSCHHH------HHHHHHHTBCTTTSTTCBCCTTEEEESC
T ss_pred cceeceEEEECCCHHHHHHHHHHHHcC-------CeEEEEEecHHH------HHHHhhcccccccccccccccccccchh
Confidence 567789999999999999999999999 999999998766 8999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhcc-----CCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC-ceEEEeCcch
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGK-----VNGDVEAISLIKGMEVKREGPCMISTLISEQLGV-SCCVLMGANI 211 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~-----l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~-~~~v~~gp~~ 211 (419)
+++++.++|+||++||++.++++++++.+. +.++.++++++||+... +...+++++.+.++. ++.+++||++
T Consensus 71 l~~a~~~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~--t~~~~seii~e~~~~~~~~vlsGP~~ 148 (189)
T d1n1ea2 71 VEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERS--TLKFPAEIIGEFLPSPLLSVLAGPSF 148 (189)
T ss_dssp HHHHHTTCSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTT--TCCCHHHHHTTTSCGGGEEEEESSCC
T ss_pred hhhccCCCCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccC--CccchhhHHHHHhcccceEEEecCCc
Confidence 999999999999999999999999988753 35678899999999754 467888999887764 5789999999
Q ss_pred HHHHHhcCceeEEEeecCCHHHHHHHHHHhCC--CCcEEEE
Q 014757 212 ANEIAVEKFSEATVGYRDNREIAEKWVQLFST--PYFMVTA 250 (419)
Q Consensus 212 a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~--~g~~~~~ 250 (419)
|.|+..|.|+.+++++. +.+.+++++++|++ ..|+++.
T Consensus 149 A~Ev~~~~pt~~viAs~-~~~~a~~i~~lfst~~~~frvy~ 188 (189)
T d1n1ea2 149 AIEVATGVFTCVSIASA-DINVARRLQRIMSTGDRSFVCWA 188 (189)
T ss_dssp HHHHHTTCCEEEEEECS-SHHHHHHHHHHHSCTTSSEEEEE
T ss_pred HHHHHcCCCcEEEEEeC-CHHHHHHHHHHhCCCCCCEEEec
Confidence 99999999999999988 89999999999986 4588875
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=3.3e-24 Score=190.80 Aligned_cols=176 Identities=19% Similarity=0.238 Sum_probs=143.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|+||+++|..|+++| ++|++|+|+.+. +.++.+++.+.++.+ +....+..+..+++.+++
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g-------~~V~l~~r~~~~----~~~~~i~~~~~~~~~-~~~~~~~~i~~~~~~~~~ 68 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNG-------NEVRIWGTEFDT----EILKSISAGREHPRL-GVKLNGVEIFWPEQLEKC 68 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHC-------CEEEEECCGGGH----HHHHHHHTTCCBTTT-TBCCCSEEEECGGGHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-------CEEEEEEecccH----HHHHHHhhhhhhhhh-cchhccccccccccHHHH
Confidence 89999999999999999999999 999999986432 236778776655443 222223456778888889
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHHHHHhc
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIANEIAVE 218 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~e~~~g 218 (419)
+.++|+||++||++.++++++++.+++++ ..++.+++|+.........+.+.+.+..+. ++.+++||++|.|+..+
T Consensus 69 ~~~ad~Ii~avps~~~~~~~~~l~~~l~~-~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~ 147 (180)
T d1txga2 69 LENAEVVLLGVSTDGVLPVMSRILPYLKD-QYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKR 147 (180)
T ss_dssp HTTCSEEEECSCGGGHHHHHHHHTTTCCS-CEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTT
T ss_pred HhccchhhcccchhhhHHHHHhhcccccc-ceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcC
Confidence 99999999999999999999999999865 567778888864332234567777765542 47899999999999999
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEEc
Q 014757 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTAV 251 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~ 251 (419)
.|+.+++++. +.+.++.++++|++.+|+++.+
T Consensus 148 ~pt~~vias~-~~~~a~~i~~~f~~~~frvy~S 179 (180)
T d1txga2 148 MPTTVVFSSP-SESSANKMKEIFETEYFGVEVT 179 (180)
T ss_dssp CCEEEEEECS-CHHHHHHHHHHHCBTTEEEEEE
T ss_pred CCcEEEEEcC-CHHHHHHHHHHHCCCCEEEEeC
Confidence 9999999988 8999999999999999999875
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.91 E-value=5.7e-24 Score=185.25 Aligned_cols=146 Identities=28% Similarity=0.400 Sum_probs=136.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccC--ccc
Q 014757 252 QDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLG--GRN 329 (419)
Q Consensus 252 ~di~~~e~~~al~Ni~a~~~g~~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~--~rn 329 (419)
.|+.++|+++++||++|+++|+.+++++++|+.+++++++++||.++++++| .+++++++++|+||+++||++ +||
T Consensus 1 tD~~GvE~~galKNi~Aia~Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g--~~~~t~~~laGlGDli~Tc~s~~sRN 78 (160)
T d1n1ea1 1 TDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALG--GDGSAVFGLAGLGDLQLTCSSELSRN 78 (160)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT--CCSTTTTSTTTHHHHHHHTTCTTSHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHhC--CCccceeccccchhheeeeecchhHH
Confidence 4889999999999999999999999999999999999999999999999995 789999999999999999987 899
Q ss_pred HHHHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhcC
Q 014757 330 RKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSERK 406 (419)
Q Consensus 330 ~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 406 (419)
+++|..+++ | .+++++++. .++++||...+..++++++++++ ++|+++.+|++++++.+|.++++.|.++
T Consensus 79 ~~~G~~l~~-g--~~~~e~~~~--~~~~vEG~~t~~~v~~l~~~~~i--~~Pi~~~vy~Il~~~~~p~~~i~~Lm~r 148 (160)
T d1n1ea1 79 FTVGKKLGK-G--LPIEEIQRT--SKAVAEGVATADPLMRLAKQLKV--KMPLCHQIYEIVYKKKNPRDALADLLSC 148 (160)
T ss_dssp HHHHHHHHH-T--CCHHHHHHS--CCSCCHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHSCCCHHHHHHHHTTS
T ss_pred HHHHHHHhc-c--ccHHHHHHh--ccchHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHhCcCCHHHHHHHHHCC
Confidence 999999998 6 678887654 58899999999999999999999 9999999999999999999999988664
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=6.6e-24 Score=183.63 Aligned_cols=147 Identities=27% Similarity=0.330 Sum_probs=134.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCC-----ccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCc
Q 014757 253 DVEGVELCGTLKNVVAIAAGFVDGLEMG-----NNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGG 327 (419)
Q Consensus 253 di~~~e~~~al~Ni~a~~~g~~~~~~~~-----~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~ 327 (419)
|+.|+|+++++||++|+++|+.++++++ .|+.+++++++++||.++++++| .++++|++++|+||+++||.+|
T Consensus 1 DviGvEi~galKNi~Aia~Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g--~~~~t~~~~aGiGDLi~Tc~~s 78 (155)
T d1txga1 1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILG--GDRETAFGLSGFGDLIATFRGG 78 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHT--SCGGGGGSTTTHHHHHHTTTCH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhc--ccchhhcccchhhhHHhhcCCC
Confidence 7889999999999999999999887554 69999999999999999999995 7999999999999999999999
Q ss_pred ccHHHHHHhhhccCCCCHHHHHHHH--hcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhCCCCHHHHHHHHhc
Q 014757 328 RNRKVAEAFAKNEGKRSFDDLEAEM--LQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVGHLPPSAIVEYSER 405 (419)
Q Consensus 328 rn~~~g~~l~~~g~~~~~~~~~~~~--~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~~~~~~~~~~~~~~ 405 (419)
||+++|..+++ | .+++++.+.+ .++.++||...++.++++++++++ ++|+++.+|++++++.+|+++++.|.+
T Consensus 79 RN~~~G~~l~~-G--~~~~e~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i--~~Pi~~~vy~Il~~~~~~~~~i~~L~~ 153 (155)
T d1txga1 79 RNGMLGELLGK-G--LSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINA--DTKLLDSIYRVLYEGLKVEEVLFELAT 153 (155)
T ss_dssp HHHHHHHHHHT-T--CCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHSCCCHHHHHHHHHT
T ss_pred CccHHHHHHhh-h--hhHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHhCcCCHHHHHHHHHc
Confidence 99999999998 6 6787776665 245688999999999999999999 999999999999999999999999876
Q ss_pred C
Q 014757 406 K 406 (419)
Q Consensus 406 ~ 406 (419)
+
T Consensus 154 R 154 (155)
T d1txga1 154 F 154 (155)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.73 E-value=1.9e-18 Score=150.69 Aligned_cols=156 Identities=13% Similarity=0.056 Sum_probs=110.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||++||..|.++| ++|++|||+++. .+..++.+.. -...++. ++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g-------~~V~~~d~~~~~------~~~a~~~~~~------------~~~~~~~-~~ 54 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRG-------HYLIGVSRQQST------CEKAVERQLV------------DEAGQDL-SL 54 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHTTSC------------SEEESCG-GG
T ss_pred CEEEEEeecHHHHHHHHHHHHCC-------CEEEEEECCchH------HHHHHHhhcc------------ceeeeec-cc
Confidence 89999999999999999999999 999999998755 5555554421 0234444 46
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceEEE-----eCcchHH-
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCCVL-----MGANIAN- 213 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~v~-----~gp~~a~- 213 (419)
++++|+||+|||...++++++++.+.++++++|+++++.-. .....+.+.... ....+ .||.++.
T Consensus 55 ~~~~DiIilavp~~~~~~vl~~l~~~l~~~~iv~~~~s~~~-------~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~ 127 (165)
T d2f1ka2 55 LQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKT-------AIAEPASQLWSGFIGGHPMAGTAAQGIDGAEE 127 (165)
T ss_dssp GTTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEECCSCCH-------HHHHHHHHHSTTCEEEEECCCCSCSSGGGCCT
T ss_pred ccccccccccCcHhhhhhhhhhhhhhcccccceeeccccch-------HHHHHHHHhhcccccceeeecccccchhhhcc
Confidence 89999999999999999999999999999999988864211 112233332221 12233 3344433
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
++..+.+..++.....+++..++++++|+..|.+++.
T Consensus 128 ~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~ 164 (165)
T d2f1ka2 128 NLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYL 164 (165)
T ss_dssp TTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEE
T ss_pred cccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCEEEe
Confidence 3344554433333334789999999999999998875
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.71 E-value=2.3e-17 Score=142.04 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=111.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||++++..|.++| ++|++|+|++++ .+.+.+.. ++..+.+++++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~-------~~i~v~~r~~~~------~~~l~~~~-------------g~~~~~~~~~~ 54 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTP-------HELIISGSSLER------SKEIAEQL-------------ALPYAMSHQDL 54 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSS-------CEEEEECSSHHH------HHHHHHHH-------------TCCBCSSHHHH
T ss_pred CEEEEEeccHHHHHHHHHHHhCC-------CeEEEEcChHHh------HHhhcccc-------------ceeeechhhhh
Confidence 89999999999999999999998 999999998765 45554321 13456788888
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHhcCc
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEKF 220 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~g~~ 220 (419)
++.+|+||+|||+++++++++. ++++++++++..|+.. +.+++.++.. ..+...|+.+..+..+.
T Consensus 55 ~~~~dvIilavkp~~~~~vl~~----l~~~~~iis~~agi~~---------~~l~~~l~~~~~ivr~mPN~~~~v~~g~- 120 (152)
T d2ahra2 55 IDQVDLVILGIKPQLFETVLKP----LHFKQPIISMAAGISL---------QRLATFVGQDLPLLRIMPNMNAQILQSS- 120 (152)
T ss_dssp HHTCSEEEECSCGGGHHHHHTT----SCCCSCEEECCTTCCH---------HHHHHHHCTTSCEEEEECCGGGGGTCEE-
T ss_pred hhccceeeeecchHhHHHHhhh----cccceeEecccccccH---------HHHHhhhcccccchhhccchhhhcCccc-
Confidence 9999999999999998887643 5678999999998864 3456666533 25556688776555442
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014757 221 SEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
+.+..+...+++..+.+.++|+..|..+++
T Consensus 121 ~~~~~~~~~~~~~~~~v~~l~~~~G~~~~v 150 (152)
T d2ahra2 121 TALTGNALVSQELQARVRDLTDSFGSTFDI 150 (152)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHTTEEEEEC
T ss_pred eEEEeCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 323333334688999999999999966654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.71 E-value=3.1e-17 Score=142.42 Aligned_cols=152 Identities=13% Similarity=0.108 Sum_probs=110.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||.+||.+|+++| ++|++|||++++ .+.+.+.+ .....+++++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G-------~~V~~~d~~~~~------~~~~~~~~--------------~~~~~~~~e~ 53 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAG-------YSLVVSDRNPEA------IADVIAAG--------------AETASTAKAI 53 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHTT--------------CEECSSHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCC-------CeEEEEeCCcch------hHHHHHhh--------------hhhcccHHHH
Confidence 89999999999999999999999 999999999766 66666644 3466788888
Q ss_pred hcCCCEEEEccCc-chHHHHH---HHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHH
Q 014757 142 VKDANMLVFVTPH-QFMEGIC---KRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANE 214 (419)
Q Consensus 142 ~~~aDlVilavp~-~~~~~vl---~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e 214 (419)
++++|+||+|||+ .++++++ +.+.+.+++++++|++++. .++ +.....+.+.+. +.. +++..+|..+.
T Consensus 54 ~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~-~p~--~~~~~~~~~~~~-g~~~vdapv~gg~~~a~- 128 (161)
T d1vpda2 54 AEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSI-APL--ASREISDALKAK-GVEMLDAPVSGGEPKAI- 128 (161)
T ss_dssp HHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCC-CHH--HHHHHHHHHHTT-TCEEEECCEESHHHHHH-
T ss_pred HhCCCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCC-CHH--HHHHHHHHHHHc-CCceecccccCChhHHh-
Confidence 9999999999985 7788887 4577788899999999863 221 122223333221 322 23444555444
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
.|.. ..+.++ +++.+++++++|+..+-++++
T Consensus 129 --~g~l--~~~~gG-~~~~~~~~~~il~~~~~~i~~ 159 (161)
T d1vpda2 129 --DGTL--SVMVGG-DKAIFDKYYDLMKAMAGSVVH 159 (161)
T ss_dssp --HTCE--EEEEES-CHHHHHHHHHHHHTTEEEEEE
T ss_pred --cCCe--EEEEcC-CHHHHHHHHHHHHHhcCceEE
Confidence 3543 345555 789999999999988766654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.68 E-value=6.3e-17 Score=139.13 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=111.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|+||++++..|.++|. ++|.+|+|++++ .+.+.+.. ++...++.++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~------~~i~v~~r~~~~------~~~l~~~~-------------~~~~~~~~~~- 54 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGG------YRIYIANRGAEK------RERLEKEL-------------GVETSATLPE- 54 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS------CEEEEECSSHHH------HHHHHHHT-------------CCEEESSCCC-
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCC------CcEEEEeCChhH------HHHhhhhc-------------cccccccccc-
Confidence 899999999999999999988873 899999999876 56666532 2345566654
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc-eEEEeCcchHHHHHhcCc
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS-CCVLMGANIANEIAVEKF 220 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~-~~v~~gp~~a~e~~~g~~ 220 (419)
+.++|+||+|||+++++++++++.+ .++++||+..|+.. +.+++.++.. ..+...|+.+..+..|.
T Consensus 55 v~~~Div~lavkP~~~~~v~~~l~~---~~~~viS~~ag~~~---------~~l~~~l~~~~~iir~mpn~p~~~~~g~- 121 (152)
T d1yqga2 55 LHSDDVLILAVKPQDMEAACKNIRT---NGALVLSVAAGLSV---------GTLSRYLGGTRRIVRVMPNTPGKIGLGV- 121 (152)
T ss_dssp CCTTSEEEECSCHHHHHHHHTTCCC---TTCEEEECCTTCCH---------HHHHHHTTSCCCEEEEECCGGGGGTCEE-
T ss_pred ccccceEEEecCHHHHHHhHHHHhh---cccEEeecccCCCH---------HHHHHHhCcCcceEeecccchhHhcCCc-
Confidence 6789999999999999998877653 47899999998864 4566666532 35666777776665553
Q ss_pred eeEEEeecCCHHHHHHHHHHhCCCCcEEE
Q 014757 221 SEATVGYRDNREIAEKWVQLFSTPYFMVT 249 (419)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~ll~~~g~~~~ 249 (419)
+.++.....+++..+.+.++|+..|..++
T Consensus 122 t~~~~~~~~~~~~~~~v~~l~~~~G~~~~ 150 (152)
T d1yqga2 122 SGMYAEAEVSETDRRIADRIMKSVGLTVW 150 (152)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 32333322357888999999999886554
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.67 E-value=1e-16 Score=139.25 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=112.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|+||+|||+|.||++||.+|+++| |+|.+|||++++ .+.+...+ .....++.+
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g-------~~v~~~d~~~~~------~~~~~~~~--------------~~~~~~~~e 53 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAG-------YLLNVFDLVQSA------VDGLVAAG--------------ASAARSARD 53 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTT-------CEEEEECSSHHH------HHHHHHTT--------------CEECSSHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCC-------CeEEEEECchhh------hhhhhhhh--------------ccccchhhh
Confidence 689999999999999999999999 999999998765 56666544 235567888
Q ss_pred HhcCCCEEEEccCc-chHHHHHHH---HhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHH
Q 014757 141 AVKDANMLVFVTPH-QFMEGICKR---LVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIAN 213 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl~~---l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~ 213 (419)
++..+|+|++|+|+ ...++++.. +.+.+.+++++|++++. .++ ....+.+.+++. |. ++++..||..+.
T Consensus 54 ~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~-~p~--~~~~~~~~~~~~-gi~~~dapv~Gg~~~a~ 129 (162)
T d3cuma2 54 AVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTI-APT--SARKIHAAARER-GLAMLDAPVSGGTAGAA 129 (162)
T ss_dssp HHTSCSEEEECCSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCC-CHH--HHHHHHHHHHHT-TCEEEECCEESCHHHHH
T ss_pred hccccCeeeecccchhhHHHHHhccccccccCCCCCEEEECCCC-CHH--HHHHHHHHHHHC-CCcEEecccccCccccc
Confidence 89999999999997 566666643 66778889999999873 321 123334444432 43 345677777665
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
.|.. ..+.++ +.+.+++++++|+..+.++++
T Consensus 130 ---~G~l--~~~~gG-~~~~~~~~~~il~~~~~~v~~ 160 (162)
T d3cuma2 130 ---AGTL--TFMVGG-DAEALEKARPLFEAMGRNIFH 160 (162)
T ss_dssp ---HTCE--EEEEES-CHHHHHHHHHHHHHHEEEEEE
T ss_pred ---cCCe--EEEecC-CHHHHHHHHHHHHHHcCccEE
Confidence 3543 355556 788999999999877766554
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=8.7e-18 Score=145.86 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=103.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|+||+.+|..|+++| |+|++|+|+++. .+.++..+.+. .... .....++. +.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G-------~~V~~~~r~~~~------~~~~~~~~~~~-----~~~~-~~~~~~~~-~~ 60 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQG-------HEVQGWLRVPQP------YCSVNLVETDG-----SIFN-ESLTANDP-DF 60 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCS------EEEEEEECTTS-----CEEE-EEEEESCH-HH
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-------CceEEEEcCHHH------hhhhccccCCc-----cccc-cccccchh-hh
Confidence 89999999999999999999999 999999999876 22222211111 1111 11233444 45
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC-C-ceEEEeCcchHHHHHhcC
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG-V-SCCVLMGANIANEIAVEK 219 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g-~-~~~v~~gp~~a~e~~~g~ 219 (419)
..++|+||++||+.+++++++.+.+.+.++++|++++||++.. +.+.+.-...++ . .......|+...+.+.|.
T Consensus 61 ~~~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~----~~l~~~~~~v~~g~~~~~~~~~~~~i~~~~~g~ 136 (167)
T d1ks9a2 61 LATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTI----EELQNIQQPLLMGTTTHAARRDGNVIIHVANGI 136 (167)
T ss_dssp HHTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEECSSSCTT----GGGTTCCSCEEEEEECCEEEEETTEEEEEECCC
T ss_pred hcccceEEEeecccchHHHHHhhccccCcccEEeeccCcccHH----HHHhhcCCcEEEEEeeEeEEecCCEEEEeCCcC
Confidence 7899999999999999999999999999999999999999864 112111000011 0 011222233333333332
Q ss_pred ceeEEEeec-CCHHHHHHHHHHhCCCCcEEEE
Q 014757 220 FSEATVGYR-DNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 220 ~~~~~~~~~-~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
+.++.. ...+..+++.++|+....++.+
T Consensus 137 ---t~ig~~~~~~~~~~~l~~~l~~a~~~~~W 165 (167)
T d1ks9a2 137 ---THIGPARQQDGDYSYLADILQTVLPDVAW 165 (167)
T ss_dssp ---EEEEESSGGGTTCTHHHHHHHTTSSCEEE
T ss_pred ---EEEeeCCCcchhHHHHHHHHHhhCCCCcc
Confidence 344432 1235567788888776656554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.61 E-value=8.6e-16 Score=135.13 Aligned_cols=106 Identities=21% Similarity=0.279 Sum_probs=88.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCcc-CCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKL-GKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l-~~~i~~~~~~~e 140 (419)
+||+|||+|+||+++|..|+++| |+|++|+|++++ .+.+++.+.+..+.++... ......++++++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G-------~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 68 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKG-------QSVLAWDIDAQR------IKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL 68 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHHTSEEEESSSCCEEECCSEEESCHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCC-------CEEEEEECCHHH------HHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh
Confidence 69999999999999999999999 999999998766 6788877655554444432 233456788888
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+++++|+||+|||+.++++++++++++++++++|+.. +|.
T Consensus 69 ~~~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~-~g~ 108 (184)
T d1bg6a2 69 AVKDADVILIVVPAIHHASIAANIASYISEGQLIILN-PGA 108 (184)
T ss_dssp HHTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES-SCC
T ss_pred HhcCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEe-CCC
Confidence 9999999999999999999999999999999987754 444
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.52 E-value=3.3e-14 Score=123.81 Aligned_cols=160 Identities=11% Similarity=0.054 Sum_probs=106.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|+||+|||+|.||+++|..|.++|. ..+|+.||++++. .+..++.+.. -...++..+
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~-----~~~I~~~D~~~~~------~~~a~~~~~~------------~~~~~~~~~ 57 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGF-----KGKIYGYDINPES------ISKAVDLGII------------DEGTTSIAK 57 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTC-----CSEEEEECSCHHH------HHHHHHTTSC------------SEEESCGGG
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCC-----CeEEEEEECChHH------HHHHHHhhcc------------hhhhhhhhh
Confidence 5679999999999999999999982 1367777777544 3444444321 022333332
Q ss_pred -HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEe-----Ccch
Q 014757 141 -AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLM-----GANI 211 (419)
Q Consensus 141 -a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~-----gp~~ 211 (419)
...++|+||+|+|...+.++++++.++++++++++++.+.-. ...+.+.+.++.+ ...+. ||..
T Consensus 58 ~~~~~~dlIila~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~-------~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~ 130 (171)
T d2g5ca2 58 VEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKG-------KLVYDLENILGKRFVGGHPIAGTEKSGVEY 130 (171)
T ss_dssp GGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCT-------HHHHHHHHHHGGGEECEEEECCCSCCSGGG
T ss_pred hhccccccccccCCchhhhhhhhhhhccccccccccccccccH-------HHHHHHHHhhcccccccccccccccccHHH
Confidence 335799999999999999999999999999999998865321 1233444444322 23333 3433
Q ss_pred HH-HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014757 212 AN-EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 212 a~-e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
+. .++.|.+..++.....+.+.++.++++|+..|.++..
T Consensus 131 a~~~Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~ 170 (171)
T d2g5ca2 131 SLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY 170 (171)
T ss_dssp CCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 33 3455654433333334788899999999998887754
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.51 E-value=1.2e-14 Score=127.75 Aligned_cols=157 Identities=11% Similarity=0.049 Sum_probs=108.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+.+|+|||+|.||++||.+|+++| ++|++|||++++ .+.+.+.+...... .......++.+
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G-------~~V~v~dr~~~~------~~~l~~~~~~~~~~------~~a~~~~~~~~ 62 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHG-------FVVCAFNRTVSK------VDDFLANEAKGTKV------LGAHSLEEMVS 62 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSTHH------HHHHHHTTTTTSSC------EECSSHHHHHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCC-------CeEEEEcCCHHH------HHHHHHhccccccc------cchhhhhhhhh
Confidence 357999999999999999999999 999999999877 67776654321100 00112234455
Q ss_pred HhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHHHHH
Q 014757 141 AVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIANEIA 216 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~e~~ 216 (419)
++..+|.+|+++++ ..+.++.+.+.+.+++++++|++++.-..+ ...+.+.+.+. +. .+++..||..+.
T Consensus 63 ~~~~~~~ii~~~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~---~~~~~~~~~~~-g~~~ldapvsGg~~~A~--- 135 (176)
T d2pgda2 63 KLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRD---TMRRCRDLKDK-GILFVGSGVSGGEDGAR--- 135 (176)
T ss_dssp HBCSSCEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHH---HHHHHHHHHHT-TCEEEEEEEESHHHHHH---
T ss_pred hhcccceEEEecCchHHHHHHHHHHHhccccCcEEEecCcchhHH---HHHHHHHHHhc-CCceeccccccCccccc---
Confidence 67789999999997 788899999999999999999998633221 23333444332 43 345666666554
Q ss_pred hcCceeEEEeecCCHHHHHHHHHHhCCCCcE
Q 014757 217 VEKFSEATVGYRDNREIAEKWVQLFSTPYFM 247 (419)
Q Consensus 217 ~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~ 247 (419)
.|. + ++++ + +++.+++++++|+..+-+
T Consensus 136 ~G~-~-~~~g-G-~~~~~~~~~~il~~~~~k 162 (176)
T d2pgda2 136 YGP-S-LMPG-G-NKEAWPHIKAIFQGIAAK 162 (176)
T ss_dssp HCC-E-EEEE-E-CTTTHHHHHHHHHHHSCB
T ss_pred CCc-E-EEcC-C-CHHHHHHHHHHHHHHhcc
Confidence 353 3 3444 4 677888899988765433
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.45 E-value=2.3e-13 Score=116.37 Aligned_cols=89 Identities=12% Similarity=0.070 Sum_probs=70.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.||+++|..|+++| ++|++|++++.. .......+. ....+++|+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g-------~~v~~~~~~~~~------~~~~~~~~~--------------~~~~~~~e~ 53 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRG-------VEVVTSLEGRSP------STIERARTV--------------GVTETSEED 53 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT-------CEEEECCTTCCH------HHHHHHHHH--------------TCEECCHHH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCC-------CeEEEEcCchhH------HHHHhhhcc--------------cccccHHHH
Confidence 89999999999999999999999 999999988764 233332221 123456788
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+.++|+||+|||+....+++.++.+.+ ++++|++++
T Consensus 54 ~~~~diIi~~v~~~~~~~~~~~~~~~~--~~~~id~st 89 (152)
T d1i36a2 54 VYSCPVVISAVTPGVALGAARRAGRHV--RGIYVDINN 89 (152)
T ss_dssp HHTSSEEEECSCGGGHHHHHHHHHTTC--CSEEEECSC
T ss_pred HhhcCeEEEEecCchHHHHHHhhcccC--CceeeccCc
Confidence 899999999999998888888887765 578888765
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.45 E-value=3.6e-13 Score=114.97 Aligned_cols=142 Identities=14% Similarity=0.107 Sum_probs=104.7
Q ss_pred CCCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+..|+||+||| +|.||++||..|.++| |+|++|||++..
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G-------~~V~~~d~~~~~--------------------------------- 45 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASG-------YPISILDREDWA--------------------------------- 45 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTT-------CCEEEECTTCGG---------------------------------
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcC-------CCcEeccccccc---------------------------------
Confidence 45678999999 9999999999999999 999999987543
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHH
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIAN 213 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~ 213 (419)
+.++.+.++|++++++|...+..++.++.+.++++++++++++ +- ..+.+.+.+..+.+ ...+.||....
T Consensus 46 ~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S-vk------~~~~~~~~~~~~~~~v~~hP~~Gp~~~~ 118 (152)
T d2pv7a2 46 VAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLTS-VK------REPLAKMLEVHTGAVLGLHPMFGADIAS 118 (152)
T ss_dssp GHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCS-CC------HHHHHHHHHHCSSEEEEEEECSCTTCSC
T ss_pred ccchhhhhccccccccchhhheeeeecccccccCCceEEEecc-cC------HHHHHHHHHHccCCEEEecccCCCcccc
Confidence 1123456899999999999999999999999999999999864 32 22334455544433 34666765432
Q ss_pred HHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014757 214 EIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 214 e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
. .+. ..+.+.+. +.+.++++.++|+..|.+++.
T Consensus 119 ~--~g~-~~v~~~g~-~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 119 M--AKQ-VVVRCDGR-FPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp C--TTC-EEEEEEEE-CGGGTHHHHHHHHHTTCEEEE
T ss_pred c--CCc-EEEEecCC-CHHHHHHHHHHHHHhCCEEEe
Confidence 1 233 33333344 667889999999999988763
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=3.9e-15 Score=127.54 Aligned_cols=148 Identities=7% Similarity=-0.018 Sum_probs=89.1
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHhc
Q 014757 64 VTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAVK 143 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~~ 143 (419)
|+|||+|+||.+|+..|.+.+ +.+.+|+|++++ .+.+.+.+.. ...++++++.
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~-------~~~~v~~R~~~~------~~~l~~~~~~--------------~~~~~~~~~~ 54 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRY-------EIGYILSRSIDR------ARNLAEVYGG--------------KAATLEKHPE 54 (153)
T ss_dssp CEEESCCHHHHHHHHTTC-----------CCCEECSSHHH------HHHHHHHTCC--------------CCCSSCCCCC
T ss_pred EEEEeCcHHHHHHHHHHHhCC-------CEEEEEeCChhh------hcchhhcccc--------------cccchhhhhc
Confidence 799999999999999997755 556799999876 5666664321 1234556788
Q ss_pred CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchHHHHHhcCceeE
Q 014757 144 DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIANEIAVEKFSEA 223 (419)
Q Consensus 144 ~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a~e~~~g~~~~~ 223 (419)
.+|+||+|||+.++.++++++. .+++++++++++...+ .++.........+..|..............
T Consensus 55 ~~DiVil~v~d~~i~~v~~~l~---~~~~ivi~~s~~~~~~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (153)
T d2i76a2 55 LNGVVFVIVPDRYIKTVANHLN---LGDAVLVHCSGFLSSE---------IFKKSGRASIHPNFSFSSLEKALEMKDQIV 122 (153)
T ss_dssp ---CEEECSCTTTHHHHHTTTC---CSSCCEEECCSSSCGG---------GGCSSSEEEEEECSCC--CTTGGGCGGGCC
T ss_pred cCcEEEEeccchhhhHHHhhhc---ccceeeeecccchhhh---------hhhhhccccceeeeecccccchhhhccCcE
Confidence 9999999999999999887763 3689999998876532 222211111222222221111111111222
Q ss_pred EEeecCCHHHHHHHHHHhCCCCcEEEEc
Q 014757 224 TVGYRDNREIAEKWVQLFSTPYFMVTAV 251 (419)
Q Consensus 224 ~~~~~~~~~~~~~l~~ll~~~g~~~~~~ 251 (419)
++.++ +++..+.++++|+..|.+++..
T Consensus 123 ~~~~g-d~~~~~~~~~l~~~lG~~~~~i 149 (153)
T d2i76a2 123 FGLEG-DERGLPIVKKIAEEISGKYFVI 149 (153)
T ss_dssp EEECC-CTTTHHHHHHHHHHHCSCEEEC
T ss_pred EEEeC-CHHHHHHHHHHHHHHCCcEEEe
Confidence 33344 6778889999999877665543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.41 E-value=3.7e-13 Score=117.97 Aligned_cols=156 Identities=12% Similarity=0.046 Sum_probs=102.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH-
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN- 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e- 140 (419)
|||+|||+|.||.+||..|+++| ++|.+|||++++ .+.+.+.+...... .......+.++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G-------~~V~~~dr~~~~------~~~l~~~~~~~~~~------~~~~~~~~~~~~ 62 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKG-------FKVAVFNRTYSK------SEEFMKANASAPFA------GNLKAFETMEAF 62 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSHHH------HHHHHHHTTTSTTG------GGEEECSCHHHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCC-------CeEEEEECCHHH------HHHHHHcCCccccc------cchhhhhhhhHH
Confidence 79999999999999999999999 999999999876 67776655332211 12333334333
Q ss_pred --HhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCc---eEEEeCcchHHH
Q 014757 141 --AVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVS---CCVLMGANIANE 214 (419)
Q Consensus 141 --a~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~---~~v~~gp~~a~e 214 (419)
.+..++.+++++++ ..+..++..+...+.++++++++++..... ...+.+.+.+ .+.. +++..+|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~---~~~~~~~l~~-~~~~~ldapv~g~~~~a~- 137 (178)
T d1pgja2 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKD---QGRRAQQLEA-AGLRFLGMGISGGEEGAR- 137 (178)
T ss_dssp HHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHH---HHHHHHHHHT-TTCEEEEEEEESHHHHHH-
T ss_pred HHhcccceEEEEeecCcchhhhhhhhhhhhccccceecccCccchhH---HHHHHHHHhh-cceeEecccccCCcchhc-
Confidence 34567788777776 677888888888899999999988643211 1222233222 1222 23444444433
Q ss_pred HHhcCceeEEEeecCCHHHHHHHHHHhCCCCcE
Q 014757 215 IAVEKFSEATVGYRDNREIAEKWVQLFSTPYFM 247 (419)
Q Consensus 215 ~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~ 247 (419)
.|. .+ +.++ +++.+++++++|+..+-+
T Consensus 138 --~g~--~~-mvgG-~~~~~~~v~pil~~~~~~ 164 (178)
T d1pgja2 138 --KGP--AF-FPGG-TLSVWEEIRPIVEAAAAK 164 (178)
T ss_dssp --HCC--EE-EEEE-CHHHHHHHHHHHHHHSCB
T ss_pred --CCc--EE-EeeC-CHHHHHHHHHHHHHHhcc
Confidence 353 23 4445 789999999999865533
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.40 E-value=1.4e-12 Score=116.82 Aligned_cols=169 Identities=15% Similarity=0.206 Sum_probs=114.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCC-------ccCCCeEe
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGI-------KLGKNVVA 134 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~-------~l~~~i~~ 134 (419)
|||+|||+|.+|.++|..|+++| ++|++||.++++ ++.|++... +.+.++. ....+...
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g-------~~V~g~D~n~~~------i~~ln~g~~-p~~e~~~~~~l~~~~~~~~~~~ 66 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARG-------HEVIGVDVSSTK------IDLINQGKS-PIVEPGLEALLQQGRQTGRLSG 66 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHTTCC-SSCCTTHHHHHHHHHHTTCEEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCC-------CcEEEEeCCHHH------HHHhcccCC-cccchhhhhhhhhhhccccccc
Confidence 89999999999999999999999 999999998765 788887432 2222221 12346778
Q ss_pred cCCHHHHhcCCCEEEEccCcc----------hHHHHHHHHh---ccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC-
Q 014757 135 DPDLENAVKDANMLVFVTPHQ----------FMEGICKRLV---GKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG- 200 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~----------~~~~vl~~l~---~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g- 200 (419)
+++..+++.++|++|+|||.. .+..+.+.+. ....++++||..++ +.+.. +......++.+..+
T Consensus 67 ~~~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST-v~pGt-t~~~~~~~l~~~~~~ 144 (202)
T d1mv8a2 67 TTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST-VLPGT-VNNVVIPLIEDCSGK 144 (202)
T ss_dssp ESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC-CCTTH-HHHTHHHHHHHHHSC
T ss_pred CCCHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc-cCCcc-hhhhhhhhhhccccc
Confidence 899999899999999999962 3555555544 34456777776654 43321 12333444555433
Q ss_pred ---CceEEEeCcchHHHH----HhcCceeEEEeecCCHHHHHHHHHHhCCCCcE
Q 014757 201 ---VSCCVLMGANIANEI----AVEKFSEATVGYRDNREIAEKWVQLFSTPYFM 247 (419)
Q Consensus 201 ---~~~~v~~gp~~a~e~----~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~ 247 (419)
.++.+...|.+..+. ....+..+++|+. +.+..++++++++....+
T Consensus 145 ~~~~~~~~~~~PE~~~~G~a~~d~~~~~~iViG~~-~~~~~~~~~~ly~~i~~~ 197 (202)
T d1mv8a2 145 KAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGEL-DKQTGDLLEEIYRELDAP 197 (202)
T ss_dssp CBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEES-SHHHHHHHHHHHTTSSSC
T ss_pred cccccccchhhhhhhcccchhhhhcCCCeEEEEeC-CHHHHHHHHHHHHhcCCC
Confidence 346677777654321 0123455677877 889999999999876544
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=3.3e-12 Score=113.43 Aligned_cols=172 Identities=15% Similarity=0.090 Sum_probs=114.0
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH-------hcCcCCcc-CCCC---c
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN-------RTNENVKY-LPGI---K 127 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~-------~~g~~~~~-~~~~---~ 127 (419)
|.++||+|||+|.||+.+|..++.+| ++|++||++++.+ ++..+.++ +.+..... ..+. .
T Consensus 2 ~~IkkvaViGaG~mG~~iA~~~a~~G-------~~V~l~D~~~~~l--~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 72 (192)
T d1f0ya2 2 IIVKHVTVIGGGLMGAGIAQVAAATG-------HTVVLVDQTEDIL--AKSKKGIEESLRKVAKKKFAENPKAGDEFVEK 72 (192)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHHH--HHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred ceeEEEEEECcCHHHHHHHHHHHhCC-------CcEEEEECChHHH--HHHHhhHHHHHHHHHHhhhhccchhhHHHHHH
Confidence 55679999999999999999999999 9999999987541 11111121 11211000 0000 0
Q ss_pred cCCCeEecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ce
Q 014757 128 LGKNVVADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SC 203 (419)
Q Consensus 128 l~~~i~~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~ 203 (419)
...++..+++..+++.++|+||-|++. ....+++.++.+.+++++++.+.+.++.++ .+.+.... ++
T Consensus 73 ~l~~i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~---------~la~~~~~p~r~ 143 (192)
T d1f0ya2 73 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT---------SIANATTRQDRF 143 (192)
T ss_dssp HHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH---------HHHTTSSCGGGE
T ss_pred HHhhccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccc---------hhhhhccCHhHE
Confidence 113567788888889999999999998 578889999999999999999998877652 23333332 22
Q ss_pred E--EEeCcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 204 C--VLMGANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 204 ~--v~~gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
. -...|.+.. ....++.+...+.+.++++.++++..|.......|
T Consensus 144 ig~HffnP~~~~-----~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 144 AGLHFFNPVPVM-----KLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp EEEEECSSTTTC-----CEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred EeeccccccCcc-----cEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 2 223343311 11122333335789999999999988877665554
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.31 E-value=6.2e-12 Score=107.78 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=99.2
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
||+|||+|.||.+||.+|.++| +.| +|+|++++ .+...+.+. ...... +.+
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g-------~~~-~~~~~~~~------~~~~~~~~~--------------~~~~~~-~~~ 52 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRF-------PTL-VWNRTFEK------ALRHQEEFG--------------SEAVPL-ERV 52 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTS-------CEE-EECSSTHH------HHHHHHHHC--------------CEECCG-GGG
T ss_pred eEEEEeHHHHHHHHHHHHHhCC-------CEE-EEeCCHHH------HHHHHHHcC--------------Cccccc-ccc
Confidence 7999999999999999999998 654 78887654 333333221 112233 346
Q ss_pred cCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC---ceEEEeCcchHHHHHhc
Q 014757 143 KDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV---SCCVLMGANIANEIAVE 218 (419)
Q Consensus 143 ~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~---~~~v~~gp~~a~e~~~g 218 (419)
.++|++|+++|. ..+..+...+.+.+.+++++|.+++. .++ +...+.+.+.+. +. ++++..||..|. .|
T Consensus 53 ~~~~~~i~~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~-~p~--~~~~~~~~~~~~-gi~~ldapVsGg~~~A~---~G 125 (156)
T d2cvza2 53 AEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSG-EPE--ASRRLAERLREK-GVTYLDAPVSGGTSGAE---AG 125 (156)
T ss_dssp GGCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEECSCC-CHH--HHHHHHHHHHTT-TEEEEECCEESHHHHHH---HT
T ss_pred cceeEEEecccchhhhhhhhccccccccccccccccccC-CHH--HHHHHHHHHHHc-CCeEEeccccCchhhhc---cC
Confidence 689999999997 67777888899989999999998763 221 122333333321 32 234555565554 46
Q ss_pred CceeEEEeecCCHHHHHHHHHHhCCCCcEEEE
Q 014757 219 KFSEATVGYRDNREIAEKWVQLFSTPYFMVTA 250 (419)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~ 250 (419)
.. .++.++ +++.+++++++|. .+-++++
T Consensus 126 ~L--~~~vgG-~~~~~~~~~p~L~-~~~~v~~ 153 (156)
T d2cvza2 126 TL--TVMLGG-PEEAVERVRPFLA-YAKKVVH 153 (156)
T ss_dssp CE--EEEEES-CHHHHHHHGGGCT-TEEEEEE
T ss_pred CE--EEEEeC-CHHHHHHHHHHHH-hcCcCEE
Confidence 53 466666 8999999999984 5555544
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.24 E-value=8.4e-12 Score=110.18 Aligned_cols=170 Identities=12% Similarity=0.058 Sum_probs=109.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc---CcCCccCCCC---ccCCCeE
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT---NENVKYLPGI---KLGKNVV 133 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~---g~~~~~~~~~---~l~~~i~ 133 (419)
++.||+|||+|.||+.+|..++.+| ++|++||++++. .++..+.+... .......... ....++.
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G-------~~V~l~D~~~~~--l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 73 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKG-------TPILMKDINEHG--IEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIR 73 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTT-------CCEEEECSSHHH--HHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC-------CeEEEEECCHHH--HhhhhhhhhhhHHhhhcccccchhhhhhhhceee
Confidence 4578999999999999999999999 999999998754 11111111110 0000000000 0122356
Q ss_pred ecCCHHHHhcCCCEEEEccCc--chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCC--ceEE--Ee
Q 014757 134 ADPDLENAVKDANMLVFVTPH--QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGV--SCCV--LM 207 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~--~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~--~~~v--~~ 207 (419)
.+++.++ +.++|+||.|+|. ....+++.+|.+.+++++++.+.+.++.++ .+.+.... ++.. ..
T Consensus 74 ~~~~~~~-~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~---------~la~~~~~p~r~~g~Hf~ 143 (186)
T d1wdka3 74 PTLSYGD-FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS---------LLAKALKRPENFVGMHFF 143 (186)
T ss_dssp EESSSTT-GGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH---------HHGGGCSCGGGEEEEECC
T ss_pred ccccccc-ccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHH---------HHHHhccCchheEeeccc
Confidence 6666654 7899999999998 567788999999999999999999888652 23333322 2221 23
Q ss_pred CcchHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEEEcCc
Q 014757 208 GANIANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVTAVQD 253 (419)
Q Consensus 208 gp~~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~~~~d 253 (419)
.|.+.. ....++.+...+++.++++.++++..|.......|
T Consensus 144 nP~~~~-----~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 144 NPVHMM-----PLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp SSTTTC-----CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCcccC-----CeEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 343321 11223444445788999999999888877655444
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=5.9e-09 Score=85.29 Aligned_cols=119 Identities=10% Similarity=-0.037 Sum_probs=80.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCCc-cHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHH
Q 014757 253 DVEGVELCGTLKNVVAIAAGFVDGLEMGN-NTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRK 331 (419)
Q Consensus 253 di~~~e~~~al~Ni~a~~~g~~~~~~~~~-n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~ 331 (419)
||.+..|.|++.|+...+.+...+...+. -....++.+.+.|+..++++.|...+++...+ .-..
T Consensus 1 dI~~~~W~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~~l~~E~~~va~a~g~~~~~~~~~~--------------~~~~ 66 (124)
T d1ks9a1 1 NIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRD--------------YVMQ 66 (124)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH--------------HHHH
T ss_pred CHHHHHHHHHHHHHhHhHHHHHhCCCchHHHhCHHHHHHHHHHHHHHHHHcCCCCcHHHHHH--------------HHHH
Confidence 67889999999998655555555554432 11135788999999999999964333222111 0011
Q ss_pred HHHHhhhccCCCCHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHHhC
Q 014757 332 VAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEICVG 392 (419)
Q Consensus 332 ~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l~~ 392 (419)
.....+. .+.+..+|++ +|+.+|.+..+|.++++|+++|+ ++|+++++|++++.
T Consensus 67 ~~~~~~~-~~sSM~qD~~----~gr~tEid~i~G~vv~~a~~~gi--~tP~~~~l~~lik~ 120 (124)
T d1ks9a1 67 VIDATAE-NISSMLQDIR----ALRHTEIDYINGFLLRRARAHGI--AVPENTRLFEMVKR 120 (124)
T ss_dssp HHHHTTT-CCCHHHHHHH----TTCCCSGGGTHHHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred HHhccCC-CCChHHHHHH----cCCcchHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHH
Confidence 1222222 2111245654 68999999999999999999999 99999999999874
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.79 E-value=1.7e-08 Score=87.31 Aligned_cols=189 Identities=13% Similarity=0.099 Sum_probs=98.5
Q ss_pred CeEEEE-CcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVV-GSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~II-GaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|| |+|.||.++|..|+++| |+|.+|+|++++ .+++.+++...+.. ... ...+...
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G-------~~V~l~~R~~e~--~~~l~~~i~~~~~~----------~~~-~~~~~~~ 60 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG-------HEIVVGSRREEK--AEAKAAEYRRIAGD----------ASI-TGMKNED 60 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-------CEEEEEESSHHH--HHHHHHHHHHHHSS----------CCE-EEEEHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-------CEEEEEECCHHH--HHHHHHHHHhcCCC----------ceE-Eeecccc
Confidence 899999 79999999999999999 999999999875 33444555443211 111 2223333
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEE-------eecCcccCCCCcccHHHHHHhHhCCceEE----EeCc
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS-------LIKGMEVKREGPCMISTLISEQLGVSCCV----LMGA 209 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs-------~~nGi~~~~~~~~~~~~~i~~~~g~~~~v----~~gp 209 (419)
.....+....++......+.+..+..... ...... ...+.... ......+.....+...... ..++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (212)
T d1jaya_ 61 AAEACDIAVLTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYS--SERSAAEIVAEVLESEKVVSALHTIPA 137 (212)
T ss_dssp HHHHCSEEEECSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEEC--CSSCHHHHHHHHHTCSCEEECCTTCCH
T ss_pred ccchhhhhhhheeeeccchHHHHhhhhhc-ccccccccccccccccccccc--ccchhhhhhhhhhhhhcccccceeecH
Confidence 34567777788776555554433322111 112211 11112111 1223344444444321111 1223
Q ss_pred chHHHHHhcCceeEEEeecCCHHHHHHHH-HHhCCCCcEEEEcCcHHHHHHHHHHHHHHHHHHHhhhcC
Q 014757 210 NIANEIAVEKFSEATVGYRDNREIAEKWV-QLFSTPYFMVTAVQDVEGVELCGTLKNVVAIAAGFVDGL 277 (419)
Q Consensus 210 ~~a~e~~~g~~~~~~~~~~~~~~~~~~l~-~ll~~~g~~~~~~~di~~~e~~~al~Ni~a~~~g~~~~~ 277 (419)
....+......+....++. +......+. .+.+..|++.+....+. ....++|+..+..++....
T Consensus 138 ~~~~~~~~~~~~~~~~a~~-~~~a~~~~~~~~~~~~g~~~~~~G~l~---~a~~~e~~~~l~~~~~~~~ 202 (212)
T d1jaya_ 138 ARFANLDEKFDWDVPVCGD-DDESKKVVMSLISEIDGLRPLDAGPLS---NSRLVESLTPLILNIMRFN 202 (212)
T ss_dssp HHHHCTTCCCCEEEEEEES-CHHHHHHHHHHHHHSTTEEEEEEESGG---GHHHHHTHHHHHHHHHHHH
T ss_pred HHhcCcccccCccceEEeC-CHHHHHHHHHHHhhCCCeEEEEeChHH---HHHHHHhHHHHHHHHHHhC
Confidence 3333222333344555555 555555444 46667888877544432 2344556655555554433
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.65 E-value=7.5e-08 Score=80.83 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=70.7
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+.+.|||+|||+|.+|+.+|..|+..|. ..+|.++|+++++ .+..+..++..- . ........+.|
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~-----~~elvL~D~~~~~--~~g~a~Dl~~a~--~------~~~~~~~~~~d 66 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI-----AEEFVIVDVVKDR--TKGDALDLEDAQ--A------FTAPKKIYSGE 66 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTC-----CSEEEEECSSHHH--HHHHHHHHHGGG--G------GSCCCEEEECC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCC-----CcEEEEeecccch--hHHHHHHHhccc--c------ccCCceEeecc
Confidence 5667899999999999999999999883 1589999998654 111111222110 0 00112345567
Q ss_pred HHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++ +.+||+||++.... .++++.+.+.++ .++.+++..+|.++
T Consensus 67 ~~~-~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNPvd 125 (146)
T d1ez4a1 67 YSD-CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVD 125 (146)
T ss_dssp GGG-GTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred HHH-hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCccH
Confidence 765 78999999987542 134455566654 56788888888543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.61 E-value=2.9e-08 Score=87.36 Aligned_cols=101 Identities=24% Similarity=0.243 Sum_probs=67.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCC-----ccCCCeEecC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGI-----KLGKNVVADP 136 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~-----~l~~~i~~~~ 136 (419)
|||+|||+|.+|.++|..|+ .| ++|+.+|.++++ ++.+++ |..+.+.++. ....+...++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g-------~~V~g~Din~~~------v~~l~~-g~~p~~e~~l~~~~~~~~~~~~~~~ 65 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQ-------NEVTIVDILPSK------VDKINN-GLSPIQDEYIEYYLKSKQLSIKATL 65 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TT-------SEEEEECSCHHH------HHHHHT-TCCSSCCHHHHHHHHHSCCCEEEES
T ss_pred CEEEEECCChhHHHHHHHHH-CC-------CcEEEEECCHHH------HHHHhh-cccccchhhHHHHhhhhhhhhhccc
Confidence 89999999999999998886 58 899999998766 777775 3222211111 0123455566
Q ss_pred CHHHHhcCCCEEEEccCcc-----------hHHHHHHHHhccCCCCcEEEEee
Q 014757 137 DLENAVKDANMLVFVTPHQ-----------FMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~-----------~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+...+..++|++++|||+. .++.+.+.+... .++++++.-+
T Consensus 66 ~~~~~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii~S 117 (196)
T d1dlja2 66 DSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLIIKS 117 (196)
T ss_dssp CHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEECS
T ss_pred hhhhhhhccccccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEeee
Confidence 6666678999999999972 244444555443 3455555433
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.58 E-value=1.7e-09 Score=98.45 Aligned_cols=165 Identities=13% Similarity=0.061 Sum_probs=103.8
Q ss_pred eEEEECcch--HHHHHHH------HHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCc----------------
Q 014757 63 KVTVVGSGN--WGSVASK------LIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNE---------------- 118 (419)
Q Consensus 63 kI~IIGaG~--mG~~lA~------~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~---------------- 118 (419)
++.++|+|. ||..++. +|++.| ++|++.|-++++ ..+.+++.+.
T Consensus 42 ~~~~~gagl~~~~~gi~~v~vs~~~fa~~g-------~~v~~~d~d~~~-----v~~~~~~g~~~i~~p~l~~~v~~~~~ 109 (242)
T d2b0ja2 42 SSITYGAELLHLVPDVKEVIVSDPCFAEEP-------GLVVIDEFDPKE-----VMEAHLSGNPESIMPKIREVVKAKAK 109 (242)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECGGGGSSS-------EEEECCCSCHHH-----HHHHHHTTCGGGTHHHHHHHHHHHHH
T ss_pred eeeeeeecHHhhhhchhhhhccchhhhhcC-------CeEEEEeCCHHH-----HHHHHhcCCchhhcchHHHHHHHHHH
Confidence 578999997 7766666 789999 899998877432 1223332111
Q ss_pred CCccCCC--Cc--cC--CCeEecCCHHHHhcCCCEEEEccCc-chHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccH
Q 014757 119 NVKYLPG--IK--LG--KNVVADPDLENAVKDANMLVFVTPH-QFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMI 191 (419)
Q Consensus 119 ~~~~~~~--~~--l~--~~i~~~~~~~ea~~~aDlVilavp~-~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~ 191 (419)
..+..+. +. .| .++++++|+.|+++++|+||+|+|. ..+.+++++|.++++++++|+++++ +.+ ..
T Consensus 110 ~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~ST-i~~------~~ 182 (242)
T d2b0ja2 110 ELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACT-IPT------TK 182 (242)
T ss_dssp TSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSS-SCH------HH
T ss_pred hccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCC-CcH------HH
Confidence 1000011 00 01 2477889999999999999999986 6689999999999999999998875 321 11
Q ss_pred HHHHHhHhC-CceEEEeCcc-hHHHHHhcCceeEEEeecCCHHHHHHHHHHhCCCCcEEE
Q 014757 192 STLISEQLG-VSCCVLMGAN-IANEIAVEKFSEATVGYRDNREIAEKWVQLFSTPYFMVT 249 (419)
Q Consensus 192 ~~~i~~~~g-~~~~v~~gp~-~a~e~~~g~~~~~~~~~~~~~~~~~~l~~ll~~~g~~~~ 249 (419)
...+.+.+. ....++.++. ...+ ..+ ...+..+.. +++.++++.++|+..|-.++
T Consensus 183 ~~~l~e~l~~kgi~vi~~hp~a~pe-~~g-~~li~~~~a-seE~iekv~elles~Gk~~~ 239 (242)
T d2b0ja2 183 FAKIFKDLGREDLNITSYHPGCVPE-MKG-QVYIAEGYA-SEEAVNKLYEIGKIARGKAF 239 (242)
T ss_dssp HHHHHHHTTCTTSEEEECBCSSCTT-TCC-CEEEEESSS-CHHHHHHHHHHHHHHHSCEE
T ss_pred HHHHHHhcccCCCEEECCCccCcCc-ccc-ceEEecCCC-CHHHHHHHHHHHHHHCCCeE
Confidence 233333343 2233333322 2111 122 233445545 88999999999998775544
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.52 E-value=2.1e-07 Score=78.80 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=71.8
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.+++||+|||+|.+|+.+|..|+.++. .++.++|.+++++ +..+..++.... . ......+..+++.
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~------~el~L~D~~~~~~--~g~a~Dl~~~~~---~---~~~~~~~~~~~~~ 70 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALREL------ADVVLYDVVKGMP--EGKALDLSHVTS---V---VDTNVSVRAEYSY 70 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTC------CEEEEECSSSSHH--HHHHHHHHHHHH---H---TTCCCCEEEECSH
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC------ceEEEEEeccccc--hhHHHHHhhhcc---c---cCCeeEEeccCch
Confidence 345799999999999999999999884 5899999887651 111122221000 0 0011234566777
Q ss_pred HHHhcCCCEEEEccCcc---------------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPHQ---------------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~---------------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++++++|+|+++.... -++++++.+.++ .++.+++..+|.++
T Consensus 71 ~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivsNPvd 134 (154)
T d1pzga1 71 EAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVTNPLD 134 (154)
T ss_dssp HHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSHH
T ss_pred hhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeCCcHH
Confidence 77789999999987310 245555666554 46888888998654
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.44 E-value=3.4e-07 Score=76.87 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=69.5
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~ 136 (419)
+....||+|||+|.+|+.+|..|+.++.. .++.++|++++++ +..+..+...- . + ....++. +.
T Consensus 3 ~~~~~KI~IiGaG~vG~~~a~~l~~~~l~-----~el~L~Di~~~~~--~g~a~Dl~~~~-~------~-~~~~~~~~~~ 67 (148)
T d1ldna1 3 NNGGARVVVIGAGFVGASYVFALMNQGIA-----DEIVLIDANESKA--IGDAMDFNHGK-V------F-APKPVDIWHG 67 (148)
T ss_dssp TTTSCEEEEECCSHHHHHHHHHHHHHTCC-----SEEEEECSSHHHH--HHHHHHHHHHT-T------S-SSSCCEEEEC
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhcCCC-----ceEEEEeeccccc--cchhccHhhCc-c------c-cCCCeEEEEC
Confidence 44557999999999999999999998831 5899999986541 11112232210 0 0 0112222 44
Q ss_pred CHHHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+ ++.+||+|+++.... .++++.+.+.++ .++.+++..+|.++
T Consensus 68 d~~-~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvtNPvd 127 (148)
T d1ldna1 68 DYD-DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVATNPVD 127 (148)
T ss_dssp CGG-GTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHH
T ss_pred CHH-HhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEecCccH
Confidence 554 589999999987542 245555666665 46788888888654
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.42 E-value=3.6e-07 Score=76.17 Aligned_cols=106 Identities=21% Similarity=0.299 Sum_probs=68.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.+|+.+|..|+.+|.. .++.++|++++++.+ .+..++... +.......+..+.+.+ +
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~-----~elvL~Di~~~~~~g--~alDl~~~~------~~~~~~~~i~~~~d~~-~ 66 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDV-----DEIALVDIAEDLAVG--EAMDLAHAA------AGIDKYPKIVGGADYS-L 66 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC-----SEEEEECSSHHHHHH--HHHHHHHHH------HTTTCCCEEEEESCGG-G
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcC-----ceEEEEecccchhhH--HHHHHhhhc------cccCCCCccccCCCHH-H
Confidence 8999999999999999999988832 589999988654111 111122100 0000112355667775 5
Q ss_pred hcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 142 VKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.++|+|+++.... .++++.+.+.++ .++.+++..+|.++
T Consensus 67 ~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNPvD 122 (142)
T d1ojua1 67 LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMD 122 (142)
T ss_dssp GTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHH
T ss_pred hccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCChH
Confidence 89999999987521 233444555554 56889999998554
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.40 E-value=5.5e-07 Score=75.02 Aligned_cols=106 Identities=11% Similarity=0.229 Sum_probs=69.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||+|||+|.+|+++|..|+.++. .++.++|.+++.. +..+..+.... ... .....+..+.+.++
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~~~l------~dl~l~D~~~~~~--~~~~~Dl~~~~---~~~---~~~~~i~~~~d~~~ 66 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAAKEL------GDIVLLDIVEGVP--QGKALDLYEAS---PIE---GFDVRVTGTNNYAD 66 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTC------SEEEEECSSSSHH--HHHHHHHHTTH---HHH---TCCCCEEEESCGGG
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCc------ceEEEEeeccccc--hhHHHHhhccc---ccc---CCCCEEEecCcHHH
Confidence 3699999999999999999999884 5899999887651 11111121100 000 01123566778775
Q ss_pred HhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.++|+||++.... .++++.+.+.++ .++.+++..+|.++
T Consensus 67 -~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvtNPvD 122 (142)
T d1uxja1 67 -TANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNPLD 122 (142)
T ss_dssp -GTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECSSSHH
T ss_pred -hcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeCCchH
Confidence 78999999998531 234555666664 56788888888654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.39 E-value=5.7e-07 Score=74.88 Aligned_cols=106 Identities=15% Similarity=0.274 Sum_probs=67.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.+|+++|..|+..+.. .++.++|+++++..++ ...+.... .. ......+..+++.+ +
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~-----~el~L~Di~~~~~~~~--~~d~~~~~--~~----~~~~~~i~~~~~~~-~ 66 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLA-----RELVLLDVVEGIPQGK--ALDMYESG--PV----GLFDTKVTGSNDYA-D 66 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC-----SEEEEECSSSSHHHHH--HHHHHTTH--HH----HTCCCEEEEESCGG-G
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC-----ceEEEeccccccchhh--hhhhhccc--ch----hcccceEEecCCHH-H
Confidence 8999999999999999999998731 5899999988651111 11111100 00 00112344456654 5
Q ss_pred hcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 142 VKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.++|+|+++.-. . .+.++.+.+.++ .++.+++..+|.++
T Consensus 67 ~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvd 122 (142)
T d1guza1 67 TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVSNPLD 122 (142)
T ss_dssp GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECCSSHH
T ss_pred hcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEecCChH
Confidence 8999999999632 1 144455566655 46788888888554
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.36 E-value=5e-07 Score=78.40 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=71.1
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..-++|+|||+|.+|..+|..+..-| .+|.+|+|++.. + ......++
T Consensus 40 l~gk~vgIiG~G~IG~~va~~l~~~g-------~~v~~~d~~~~~-------------~-------------~~~~~~~l 86 (181)
T d1qp8a1 40 IQGEKVAVLGLGEIGTRVGKILAALG-------AQVRGFSRTPKE-------------G-------------PWRFTNSL 86 (181)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTT-------CEEEEECSSCCC-------------S-------------SSCCBSCS
T ss_pred ccCceEEEeccccccccceeeeeccc-------cccccccccccc-------------c-------------ceeeeech
Confidence 34478999999999999999999989 899999987532 0 01123567
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCccc
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~ 183 (419)
++.+..+|+|++++|- .....++ ++....++++.++|.+..|-..
T Consensus 87 ~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~iv 133 (181)
T d1qp8a1 87 EEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVL 133 (181)
T ss_dssp HHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGB
T ss_pred hhhhhccchhhcccccccccccccccceeeeccccceEEeccccccc
Confidence 8889999999999996 4444444 4556778899999999887544
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.35 E-value=5.9e-07 Score=74.62 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=65.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
|||+|||+|.+|+++|..|+.++.. .++.++|++++++.++ +..+... .. +. +.....+.+.+ +
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~-----~el~L~Di~~~~~~g~--~~Dl~~~-~~--~~-----~~~~~~~~~~~-~ 64 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFA-----REMVLIDVDKKRAEGD--ALDLIHG-TP--FT-----RRANIYAGDYA-D 64 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC-----SEEEEECSSHHHHHHH--HHHHHHH-GG--GS-----CCCEEEECCGG-G
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC-----CEEEEEecccccccch--hcccccc-cc--cc-----ccccccCCcHH-H
Confidence 8999999999999999999998742 5899999886541111 1112110 00 00 11122344554 5
Q ss_pred hcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 142 VKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++++|+|+++.-. . -+.++.+.+.++ .|+.+++..+|.++
T Consensus 65 ~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvtNPvd 120 (140)
T d1a5za1 65 LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVTNPVD 120 (140)
T ss_dssp GTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred hcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeCCcHH
Confidence 8999999999633 1 134444555554 46888888888554
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.31 E-value=2.6e-06 Score=70.83 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=67.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~~e 140 (419)
.||+|||+|.+|+.+|..|...+. -.++.++|++++++.+ .+..+.. .. ........ ..+.+
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l-----~~el~L~D~~~~~~~g--~a~Dl~~-~~--------~~~~~~~~~~~~~~- 64 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQT-----ANELVLIDVFKEKAIG--EAMDINH-GL--------PFMGQMSLYAGDYS- 64 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-----SSEEEEECCC---CCH--HHHHHTT-SC--------CCTTCEEEC--CGG-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCC-----CCEEEEEeccCCccce--eeeeecc-Cc--------ccCCCeeEeeCcHH-
Confidence 699999999999999999999883 1589999998876222 1222332 10 11111222 34454
Q ss_pred HhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC
Q 014757 141 AVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG 200 (419)
Q Consensus 141 a~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g 200 (419)
.+.++|+|+++.-.. -++++.+.+.++ .++.+++..+|.++ .+...+.+..|
T Consensus 65 ~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPvd-------v~t~~~~k~sg 132 (142)
T d1y6ja1 65 DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVD-------IITYMIQKWSG 132 (142)
T ss_dssp GGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHH-------HHHHHHHHHHT
T ss_pred HhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEEecChHH-------HHHHHHHHHHC
Confidence 478999999984321 133344455554 46778888888553 33445555544
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.25 E-value=1.7e-06 Score=72.23 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=66.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+||+|||+|.+|+.+|..|+..|.. .++.++|++++++ +..+..+..... ....+..+ .+.+.++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~-----~elvL~Di~~~~~--~g~~~Dl~~a~~------~~~~~~~~-~~~d~~~- 66 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVA-----DDYVFIDANEAKV--KADQIDFQDAMA------NLEAHGNI-VINDWAA- 66 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC-----SEEEEECSSHHHH--HHHHHHHHHHGG------GSSSCCEE-EESCGGG-
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCC-----ceEEEEecccchh--hhHHHhhhcccc------ccCCccce-eccCHHH-
Confidence 6999999999999999999998731 5899999886541 111112222100 00111122 3566654
Q ss_pred hcCCCEEEEccCcc--------------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 142 VKDANMLVFVTPHQ--------------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~~--------------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+||+||++.... -++++.+.+.++ .++.+++..+|.++
T Consensus 67 l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvD 126 (146)
T d1hyha1 67 LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVD 126 (146)
T ss_dssp GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred hccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcHH
Confidence 79999999985421 134444555543 57889999998654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.23 E-value=1.3e-06 Score=76.57 Aligned_cols=97 Identities=9% Similarity=0.040 Sum_probs=72.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.+|..+|..+..-| .+|..|++.... +.....+ +....+++
T Consensus 48 ~gktvgIiG~G~IG~~va~~l~~fg-------~~v~~~d~~~~~-------~~~~~~~--------------~~~~~~l~ 99 (193)
T d1mx3a1 48 RGETLGIIGLGRVGQAVALRAKAFG-------FNVLFYDPYLSD-------GVERALG--------------LQRVSTLQ 99 (193)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTT-------CEEEEECTTSCT-------THHHHHT--------------CEECSSHH
T ss_pred eCceEEEeccccccccceeeeeccc-------cceeeccCcccc-------cchhhhc--------------cccccchh
Confidence 3468999999999999999998888 899999987543 1222211 23456788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+.++.+|+|++++|- ...+.++ ++....+++++++|.++.|-...
T Consensus 100 ~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivd 146 (193)
T d1mx3a1 100 DLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 146 (193)
T ss_dssp HHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBC
T ss_pred hccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEc
Confidence 888999999999995 3444443 34556788999999998876654
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.22 E-value=1.4e-06 Score=73.95 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=65.7
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~ 136 (419)
.....+|.|||+|.||..++..|...|. .++++++|+.++ ++.+.+. +. ......
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~------~~i~v~nRt~~k------a~~l~~~~~~------------~~~~~~ 76 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGV------RAVLVANRTYER------AVELARDLGG------------EAVRFD 76 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCC------SEEEEECSSHHH------HHHHHHHHTC------------EECCGG
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCC------cEEEEEcCcHHH------HHHHHHhhhc------------ccccch
Confidence 4456799999999999999999999983 479999998766 4444432 21 112235
Q ss_pred CHHHHhcCCCEEEEccCcc---hHHHHHHHHhcc--CCCCcEEEEee
Q 014757 137 DLENAVKDANMLVFVTPHQ---FMEGICKRLVGK--VNGDVEAISLI 178 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~---~~~~vl~~l~~~--l~~~tiivs~~ 178 (419)
+..+.+.++|+||.||.+. -..+.++..... .....+++++.
T Consensus 77 ~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 77 ELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp GHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred hHHHHhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence 6667788999999999863 223333333221 12345788885
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.17 E-value=1.2e-06 Score=75.14 Aligned_cols=82 Identities=10% Similarity=0.161 Sum_probs=50.3
Q ss_pred cCeEEEECcchHHHHHHH--HHHHcCCCCCCCC-ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGSGNWGSVASK--LIASNTLRLSSFH-DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~--~La~~G~~~~~~~-~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.|||+|||+|++|.+.+. .|+... .+. .++.++|++++++ +.....++... .....+.++..++|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~----~l~~~eivL~Did~~~~--~~~~~~~~~~~------~~~~~~~~i~~~td 69 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTP----GLSGSTVTLMDIDEERL--DAILTIAKKYV------EEVGADLKFEKTMN 69 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCG----GGTTCEEEEECSCHHHH--HHHHHHHHHHH------HHTTCCCEEEEESC
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhcc----ccCCCEEEEEeCCchHH--HHHHHHHHHHH------HhcCCCeEEEEeCC
Confidence 489999999999976543 244321 011 5999999987651 11111111100 00111235677899
Q ss_pred HHHHhcCCCEEEEccCc
Q 014757 138 LENAVKDANMLVFVTPH 154 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~ 154 (419)
.++++.+||+|+++.-.
T Consensus 70 ~~eaL~dad~Vv~~~~~ 86 (171)
T d1obba1 70 LDDVIIDADFVINTAMV 86 (171)
T ss_dssp HHHHHTTCSEEEECCCT
T ss_pred hhhcccCCCeEeeeccc
Confidence 99999999999998754
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.17 E-value=3e-06 Score=73.80 Aligned_cols=98 Identities=11% Similarity=0.066 Sum_probs=74.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.+|..+|+.|..-| .+|..|++.... .......+ +....+++
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg-------~~v~~~d~~~~~------~~~~~~~~--------------~~~~~~l~ 95 (188)
T d2naca1 43 EAMHVGTVAAGRIGLAVLRRLAPFD-------VHLHYTDRHRLP------ESVEKELN--------------LTWHATRE 95 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGT-------CEEEEECSSCCC------HHHHHHHT--------------CEECSSHH
T ss_pred cccceeeccccccchhhhhhhhccC-------ceEEEEeecccc------cccccccc--------------ccccCCHH
Confidence 4469999999999999999998888 899999987654 22223222 23457788
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+.++.+|+|++++|- ...+.++ ++....+++++++|.++.|-...
T Consensus 96 ~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd 142 (188)
T d2naca1 96 DMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD 142 (188)
T ss_dssp HHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBC
T ss_pred HHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhh
Confidence 889999999999996 4455544 44556788999999998876654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.17 E-value=5e-06 Score=67.87 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=64.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecCCH--
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADPDL-- 138 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~~~-- 138 (419)
|||.|+|+|.+|..++..|.+.| ++|.+++.++++ ++.+.+. +... ..++ .+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g-------~~v~vid~d~~~------~~~~~~~~~~~v-i~Gd---------~~~~~~ 57 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKG-------HDIVLIDIDKDI------CKKASAEIDALV-INGD---------CTKIKT 57 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCHHH------HHHHHHHCSSEE-EESC---------TTSHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-------CCcceecCChhh------hhhhhhhhhhhh-ccCc---------ccchhh
Confidence 89999999999999999999999 999999998866 6666543 2110 0000 1222
Q ss_pred -HHH-hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 139 -ENA-VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 139 -~ea-~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++ +.++|.++.++++....-....+...+.+..+|+-..
T Consensus 58 l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~ 99 (132)
T d1lssa_ 58 LEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARIS 99 (132)
T ss_dssp HHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred hhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEec
Confidence 222 5689999999998765554455555566666655433
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.17 E-value=6.7e-07 Score=76.22 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=63.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||.|||+|.||..+|..|+++| ++|++|+|+.++ ++.+.+....... ...........++
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g-------~~V~v~dr~~~~------a~~l~~~~~~~~~-----~~~~~~~~~~~~~ 63 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSG-------IKVTVACRTLES------AKKLSAGVQHSTP-----ISLDVNDDAALDA 63 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTT-------CEEEEEESCHHH------HHHHHTTCTTEEE-----EECCTTCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-------CEEEEEECChHH------HHHHHhccccccc-----ccccccchhhhHh
Confidence 368999999999999999999999 999999999876 5666653211000 0000001112334
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
.+...|+++.++|......+...... .+..++++
T Consensus 64 ~i~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~ 97 (182)
T d1e5qa1 64 EVAKHDLVISLIPYTFHATVIKSAIR---QKKHVVTT 97 (182)
T ss_dssp HHTTSSEEEECSCGGGHHHHHHHHHH---HTCEEECS
T ss_pred hhhccceeEeeccchhhhHHHHHHHh---hccceeec
Confidence 56789999999998766665544443 24455544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.14 E-value=4.4e-06 Score=69.41 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=72.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
.||+|||+|.+|+++|..|+.+|.. .++.++|++++++.+ .+..++. .. .+.+ ...+..+++.+ +
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~-----~ElvL~D~~~~~~~g--~a~Dl~~-a~--~~~~----~~~i~~~~~~~-~ 66 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIA-----REIVLEDIAKERVEA--EVLDMQH-GS--SFYP----TVSIDGSDDPE-I 66 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC-----SEEEEECSSHHHHHH--HHHHHHH-TG--GGST----TCEEEEESCGG-G
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC-----cEEEEEEeccccchh--HHHHHHh-cc--ccCC----CceeecCCCHH-H
Confidence 5899999999999999999999842 589999988654111 0112222 10 0111 12344566765 4
Q ss_pred hcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhC
Q 014757 142 VKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLG 200 (419)
Q Consensus 142 ~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g 200 (419)
+.++|+|+++.-.. .++++.+++.++ .++.+++..+|.++ .+...+.+..|
T Consensus 67 ~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvtNPvD-------vmt~~~~~~sg 133 (143)
T d1llda1 67 CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVD-------IATHVAQKLTG 133 (143)
T ss_dssp GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHH-------HHHHHHHHHHT
T ss_pred hhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeCCchH-------HHHHHHHHHHC
Confidence 78999999987541 133344555554 46788888888654 33445555444
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.14 E-value=3.5e-06 Score=70.58 Aligned_cols=106 Identities=19% Similarity=0.266 Sum_probs=68.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||+|||+|.+|+.+|..|...+. .++.++|++++++ +..+..++... .. ...+..+..+.+.+
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l------~el~L~Di~~~~~--~g~a~Dl~~~~-~~-----~~~~~~v~~~~~~~- 67 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNL------GDVVLFDIVKNMP--HGKALDTSHTN-VM-----AYSNCKVSGSNTYD- 67 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC------CEEEEECSSSSHH--HHHHHHHHTHH-HH-----HTCCCCEEEECCGG-
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC------CeEEEEeccCCcc--eeeecchhhhc-cc-----cCCCcEEEeccccc-
Confidence 4699999999999999999988874 6899999987651 11112222100 00 00112244445554
Q ss_pred HhcCCCEEEEccCcc---------------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPHQ---------------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~---------------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+.++|+|+++.-.. .++++.+.+.++ .++.+++..+|.++
T Consensus 68 ~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPvD 129 (150)
T d1t2da1 68 DLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPVD 129 (150)
T ss_dssp GGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHH
T ss_pred ccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchH
Confidence 478999999987631 234444555554 47889888998654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.12 E-value=7.3e-06 Score=69.28 Aligned_cols=106 Identities=21% Similarity=0.254 Sum_probs=67.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
..||+|||+|.+|+.+|..|+..|.. .++.++|++++.+ +..+..+.. ... +.+ ...+....+.++
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~-----~ElvLiD~~~~~a--~g~alDl~h-~~~--~~~----~~~~~~~~d~~~ 85 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLA-----DELALVDVLEDKL--KGEMMDLQH-GSL--FLQ----TPKIVADKDYSV 85 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCC-----SEEEEECSCHHHH--HHHHHHHHH-TGG--GCC----CSEEEECSSGGG
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCC-----cEEEEEEeccchh--HHHHHHHhc-ccc--ccC----CCeEEeccchhh
Confidence 35999999999999999999999842 4899999876541 111122322 100 000 112334456654
Q ss_pred HhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+||+|+++.-.. .++++.+++.+. .++.+++..+|.++
T Consensus 86 -~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPvD 141 (160)
T d1i0za1 86 -TANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPVD 141 (160)
T ss_dssp -GTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred -cccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCchH
Confidence 78999999976431 244445556554 56889999998654
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.11 E-value=4.2e-06 Score=73.01 Aligned_cols=97 Identities=9% Similarity=0.105 Sum_probs=73.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++|+|||.|.+|..+|..+..-| .+|..|++.... .+.....+ .....++++
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~fg-------~~v~~~d~~~~~------~~~~~~~~--------------~~~~~~l~~ 99 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGFD-------MDIDYFDTHRAS------SSDEASYQ--------------ATFHDSLDS 99 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT-------CEEEEECSSCCC------HHHHHHHT--------------CEECSSHHH
T ss_pred ccceEEeecccchHHHHHHHHhhc-------cccccccccccc------cchhhccc--------------ccccCCHHH
Confidence 478999999999999999998888 899999987654 22222211 123467888
Q ss_pred HhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 141 AVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 141 a~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++..+|+|++++|- ...+.++ ++....++++.++|..+.|-...
T Consensus 100 ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivd 145 (191)
T d1gdha1 100 LLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVD 145 (191)
T ss_dssp HHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBC
T ss_pred HHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchh
Confidence 89999999999996 4555555 34566788999999998886654
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.08 E-value=1.3e-06 Score=74.80 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=49.3
Q ss_pred cCeEEEECcchHHH--HHHHHHHHcCCCCCCCC-ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGSGNWGS--VASKLIASNTLRLSSFH-DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~--~lA~~La~~G~~~~~~~-~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
+|||+|||+|+.|. .++..+.... .++ .++.++|.++++...+ ..+...+. .+.+...+..+..++|
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~----~~~~~eI~L~Di~e~~~~~~-~~d~~~~~-----~~~~~~~~~~~~~~td 70 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYH----ELPVGELWLVDIPEGKEKLE-IVGALAKR-----MVEKAGVPIEIHLTLD 70 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTT----TCCEEEEEEECCGGGHHHHH-HHHHHHHH-----HHHHTTCCCEEEEESC
T ss_pred CcEEEEECCChhhHHHHHHHHHHhcc----ccCCCEEEEEcCCccHHHHH-HHHHHHHH-----HHHhcCCCceeeecCC
Confidence 48999999997764 4455554431 111 4899999876531111 11211110 0001112234667888
Q ss_pred HHHHhcCCCEEEEccCc
Q 014757 138 LENAVKDANMLVFVTPH 154 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~ 154 (419)
..++++++|+||++...
T Consensus 71 ~~~al~gaDvVv~ta~~ 87 (169)
T d1s6ya1 71 RRRALDGADFVTTQFRV 87 (169)
T ss_dssp HHHHHTTCSEEEECCCT
T ss_pred chhhcCCCCEEEEcccc
Confidence 88889999999999964
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.08 E-value=3.8e-06 Score=69.96 Aligned_cols=107 Identities=17% Similarity=0.303 Sum_probs=61.7
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCe--EecCCH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNV--VADPDL 138 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i--~~~~~~ 138 (419)
|||+|||+ |.+|.++|..|+..+.. .++.++|+++.....+..+..+.... ........+ ..+.+.
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~-----~el~L~D~~~~~~~~~g~a~Dl~~~~------~~~~~~~~~~~~~~~d~ 69 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFM-----KDLVLIGREHSINKLEGLREDIYDAL------AGTRSDANIYVESDENL 69 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTC-----CEEEEEECGGGHHHHHHHHHHHHHHH------TTSCCCCEEEEEETTCG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcc-----cccccccchhhhHhhhcccccchhcc------cccccCCccccCCcchH
Confidence 89999996 99999999999998832 58999998754200111112222100 000001112 233455
Q ss_pred HHHhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+ ++++||+||++.-. . -++++.+.+.++- +..++| .+|.++
T Consensus 70 ~-~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~-~~~iiv-VtNPvD 126 (145)
T d1hyea1 70 R-IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFV-ITNPVD 126 (145)
T ss_dssp G-GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEE-CSSSHH
T ss_pred H-HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccC-CCeEEE-EcCchH
Confidence 4 58899999998432 1 1444455566653 455544 677553
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.07 E-value=6.9e-06 Score=69.39 Aligned_cols=110 Identities=19% Similarity=0.236 Sum_probs=68.3
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.+...||+|||+|.+|+.+|..|...|.. .++.++|++++.+ +..+..++.... +.+ . ..+....+
T Consensus 16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~-----~elvL~D~~~~~a--~g~alDl~~~~~---~~~---~-~~~~~~~d 81 (159)
T d2ldxa1 16 KLSRCKITVVGVGDVGMACAISILLKGLA-----DELALVDADTDKL--RGEALDLQHGSL---FLS---T-PKIVFGKD 81 (159)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTSC-----SEEEEECSCHHHH--HHHHHHHHHTTT---TCS---C-CEEEEESS
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEeCCchhh--hccHHHHhCcch---hcC---C-CeEEeccc
Confidence 34557999999999999999999999841 5899999876541 111222332110 000 0 12334566
Q ss_pred HHHHhcCCCEEEEccCcc------------hHHHHHHHHhccC---CCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPHQ------------FMEGICKRLVGKV---NGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~------------~~~~vl~~l~~~l---~~~tiivs~~nGi~ 182 (419)
.++ +.++|+|+++.... ....+++++.+.+ .++.+++..+|.++
T Consensus 82 ~~~-~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvD 140 (159)
T d2ldxa1 82 YNV-SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD 140 (159)
T ss_dssp GGG-GTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHH
T ss_pred hhh-hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHH
Confidence 654 78999999987541 1223344443332 57889999998554
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.06 E-value=6.7e-06 Score=68.37 Aligned_cols=103 Identities=14% Similarity=0.200 Sum_probs=67.5
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCC-eEecCCHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKN-VVADPDLE 139 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~-i~~~~~~~ 139 (419)
.||+|||+ |.+|+++|..|+.+|.. .++.++|.++.+ .+.+.-.+.. ...+.. .....+..
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~-----~elvLiDi~~~~------~~a~Dl~~~~------~~~~~~~~~~~~~~~ 63 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLV-----SRLTLYDIAHTP------GVAADLSHIE------TRATVKGYLGPEQLP 63 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTC-----SEEEEEESSSHH------HHHHHHTTSS------SSCEEEEEESGGGHH
T ss_pred CeEEEECCCChHHHHHHHHHHhCCcc-----ceEEEEeccccc------hhhHHHhhhh------hhcCCCeEEcCCChH
Confidence 38999995 99999999999998842 579999986533 2332221110 001111 11234555
Q ss_pred HHhcCCCEEEEccCc----------------chHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVTPH----------------QFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~----------------~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+++++||+||++.-. ..++++.+.+.++ .++.+++..+|.++
T Consensus 64 ~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD 121 (144)
T d1mlda1 64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVN 121 (144)
T ss_dssp HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred HHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Confidence 678999999998642 1355566667666 67889999998665
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.06 E-value=3.7e-06 Score=73.72 Aligned_cols=95 Identities=18% Similarity=0.273 Sum_probs=70.0
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.+|..+|..|..-| .+|..|++.... +. ...+ . ...+++
T Consensus 42 ~gk~vgIiG~G~IG~~va~~l~~fg-------~~V~~~d~~~~~-------~~-~~~~--------------~-~~~~l~ 91 (197)
T d1j4aa1 42 RDQVVGVVGTGHIGQVFMQIMEGFG-------AKVITYDIFRNP-------EL-EKKG--------------Y-YVDSLD 91 (197)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCH-------HH-HHTT--------------C-BCSCHH
T ss_pred cCCeEEEecccccchhHHHhHhhhc-------ccccccCccccc-------cc-ccce--------------e-eecccc
Confidence 3478999999999999999998888 899999876542 11 1211 1 235688
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+.++.+|+|++++|- ...+.++ ++....++++.++|..+.|-...
T Consensus 92 ~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivd 138 (197)
T d1j4aa1 92 DLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVD 138 (197)
T ss_dssp HHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBC
T ss_pred ccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhh
Confidence 889999999999995 4444443 34445678899999998876654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.06 E-value=2.4e-06 Score=69.80 Aligned_cols=96 Identities=10% Similarity=0.146 Sum_probs=61.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+++.|+|+|.+|..+|..|.+.| ++|++++.+++. ++.+...+.... .++.. -...++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g-------~~vvvid~d~~~------~~~~~~~~~~~~-~gd~~------~~~~l~~a 60 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG-------HEVLAVDINEEK------VNAYASYATHAV-IANAT------EENELLSL 60 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT-------CCCEEEESCHHH------HHHTTTTCSEEE-ECCTT------CTTHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-------CeEEEecCcHHH------HHHHHHhCCcce-eeecc------cchhhhcc
Confidence 47899999999999999999999 999999998765 566655442111 11100 01112333
Q ss_pred -hcCCCEEEEccCcchHHHH-HHHHhccCCCCcEEEEee
Q 014757 142 -VKDANMLVFVTPHQFMEGI-CKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 142 -~~~aDlVilavp~~~~~~v-l~~l~~~l~~~tiivs~~ 178 (419)
+.++|.+|+++++...... +..+....+.. .++...
T Consensus 61 ~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~-~iiar~ 98 (134)
T d2hmva1 61 GIRNFEYVIVAIGANIQASTLTTLLLKELDIP-NIWVKA 98 (134)
T ss_dssp TGGGCSEEEECCCSCHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred CCccccEEEEEcCchHHhHHHHHHHHHHcCCC-cEEeec
Confidence 6789999999998644443 34444444433 344443
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.05 E-value=6.5e-06 Score=72.16 Aligned_cols=105 Identities=9% Similarity=0.074 Sum_probs=71.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.++||+|||.|+-|.+-|.+|.++|+.+-+ ..+|.+--|.... + .+.-++.|..+. +. ..-+.+
T Consensus 43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~s-gv~V~VGLr~gs~-S----~~kA~~dGf~v~---------~~-~v~~v~ 106 (226)
T d1qmga2 43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKS-DVVVKIGLRKGSN-S----FAEARAAGFSEE---------NG-TLGDMW 106 (226)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHHHHTTC-CCEEEEEECTTCS-C----HHHHHHTTCCGG---------GT-CEEEHH
T ss_pred CCCEEEEEEeccHHHHHHHhChhhcccccC-CceEEEEeCCCCh-h----HHHHHHcCCccC---------CC-cccCHH
Confidence 457899999999999999999997610000 0346665555432 1 234444443211 00 113466
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
|+++.+|+|++.+|+....++.+++.|++++++.+.... |+
T Consensus 107 EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaH-GF 147 (226)
T d1qmga2 107 ETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSH-GF 147 (226)
T ss_dssp HHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESS-SH
T ss_pred HHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeeecc-hh
Confidence 788999999999999999999999999999998875443 44
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.02 E-value=1.3e-05 Score=67.92 Aligned_cols=94 Identities=16% Similarity=0.243 Sum_probs=72.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.++|+|||.|+=|.+=|.+|.++| .+|++--|.... . .+.-++.|. +. -+.+|
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG-------~~V~VGLr~gs~----s-~~~A~~~Gf--------------~v-~~~~e 68 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSG-------VDVTVGLRSGSA----T-VAKAEAHGL--------------KV-ADVKT 68 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTT-------CCEEEECCTTCH----H-HHHHHHTTC--------------EE-ECHHH
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcC-------CCEEEEcCCCCc----c-HHHHhhhcc--------------cc-ccHHH
Confidence 368999999999999999999999 899987776542 1 122233331 22 45778
Q ss_pred HhcCCCEEEEccCcchHHHHHH-HHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPHQFMEGICK-RLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~-~l~~~l~~~tiivs~~nGi~ 182 (419)
+++.+|+|++.+|+....++.+ ++.|++++++.+.... |+.
T Consensus 69 A~~~aDiim~L~PD~~q~~vy~~~I~p~lk~g~~L~FaH-Gfn 110 (182)
T d1np3a2 69 AVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAH-GFS 110 (182)
T ss_dssp HHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEESC-CHH
T ss_pred HhhhcCeeeeecchHHHHHHHHHhhhhhcCCCcEEEEec-cce
Confidence 8999999999999999999985 7999999998876443 443
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=1.8e-05 Score=65.70 Aligned_cols=103 Identities=10% Similarity=0.177 Sum_probs=63.7
Q ss_pred CeEEEEC-cchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCC-eEecCCH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKN-VVADPDL 138 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~-i~~~~~~ 138 (419)
|||+||| +|.+|+++|..|... +. -.++.++|..+ . .+..+..++. .. ...+.. +..+++.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~-----~~el~L~D~~~-~--~~g~a~Dl~h--~~------~~~~~~~~~~~~~~ 64 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPS-----GSELSLYDIAP-V--TPGVAVDLSH--IP------TAVKIKGFSGEDAT 64 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCT-----TCEEEEECSST-T--HHHHHHHHHT--SC------SSCEEEEECSSCCH
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCC-----CcEEEEecccc-c--chhHHHHHHC--Cc------cccCCcEEEcCCCc
Confidence 8999999 599999999988654 31 16899999764 3 1111122322 10 001111 1123444
Q ss_pred HHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+ +++++|+||++--.. -++++.+++.++ .++.+++..+|.++
T Consensus 65 ~-~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~-~p~aivivvtNPvD 122 (145)
T d2cmda1 65 P-ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVN 122 (145)
T ss_dssp H-HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHH
T ss_pred c-ccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhh-CCCcEEEEccCCch
Confidence 4 588999999987421 255556666665 46788888888665
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.98 E-value=6.8e-06 Score=71.23 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=72.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++|+|+|.|.+|..+|..+..-| .+|..|++.... +.....+ ++ ..+.+
T Consensus 43 ~~k~vgiiG~G~IG~~va~~~~~fg-------~~v~~~d~~~~~-------~~~~~~~--------------~~-~~~l~ 93 (184)
T d1ygya1 43 FGKTVGVVGLGRIGQLVAQRIAAFG-------AYVVAYDPYVSP-------ARAAQLG--------------IE-LLSLD 93 (184)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTT-------CEEEEECTTSCH-------HHHHHHT--------------CE-ECCHH
T ss_pred cceeeeeccccchhHHHHHHhhhcc-------ceEEeecCCCCh-------hHHhhcC--------------ce-eccHH
Confidence 3468999999999999999998777 899999987543 2222222 22 24678
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++++.||+|++++|- ...+.++ ++....+++++++|.+..|-...
T Consensus 94 ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVd 140 (184)
T d1ygya1 94 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD 140 (184)
T ss_dssp HHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred HHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhh
Confidence 889999999999995 5555555 34567788999999998886654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.92 E-value=1.3e-05 Score=67.24 Aligned_cols=115 Identities=16% Similarity=0.095 Sum_probs=66.8
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..|||+|||| |.+|+.+|..|++.+.....-..++.+++.++.. ...+.+.-.... ........+...++.
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~----~~~~~l~~~~~~----~~~~~~~~~~~~~~~ 73 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMM----GVLDGVLMELQD----CALPLLKDVIATDKE 73 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGH----HHHHHHHHHHHH----TCCTTEEEEEEESCH
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccch----hhhhhhhhhhcc----cccccccccccCccc
Confidence 4689999995 9999999999987653221111356666655432 112222110000 001112235566777
Q ss_pred HHHhcCCCEEEEccCcc----------------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPHQ----------------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~----------------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++.+++|+||++--.. .++++.+.+.++.+...+++..+|.++
T Consensus 74 ~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD 133 (154)
T d5mdha1 74 EIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN 133 (154)
T ss_dssp HHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred ccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHH
Confidence 77899999999987431 244455566665555555666777543
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.90 E-value=5.5e-06 Score=67.89 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=80.7
Q ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccH-HHHHHhhhccCCCCHHHHHHHH
Q 014757 274 VDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNR-KVAEAFAKNEGKRSFDDLEAEM 352 (419)
Q Consensus 274 ~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~-~~g~~l~~~g~~~~~~~~~~~~ 352 (419)
+..+|+.+|........++.|+..++++. |++++++.+....+ ...++.. ..++.+.+ ++ +.+.+
T Consensus 5 g~~~Kl~nN~l~~~~~~~~aEal~la~~~--Gid~~~~~~~l~~~-----~~~S~~~~~~~~~~~~-~~-~~~~f----- 70 (133)
T d1vpda1 5 GNVTKLANQVIVALNIAAMSEALTLATKA--GVNPDLVYQAIRGG-----LAGSTVLDAKAPMVMD-RN-FKPGF----- 70 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHTTS-----TTCCHHHHHHHHHHHT-TC-CCCSS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHhc-----cccchhhhhccchhhh-cc-CCCCc-----
Confidence 33445556777778899999999999999 58999998742211 1112221 22455554 32 33211
Q ss_pred hcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014757 353 LQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 353 ~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
......||++++.++|++.|+ ++|+.+.+.+.+ +++.|.+.+++++++
T Consensus 71 ---~~~l~~KDl~l~~~~a~~~~~--~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~ 125 (133)
T d1vpda1 71 ---RIDLHIKDLANALDTSHGVGA--QLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 125 (133)
T ss_dssp ---BHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 222358999999999999999 999999999998 578999999999986
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=1.5e-05 Score=69.09 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=71.4
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
-.-++|+|||.|.+|..+|..+..-| .+|..|++.... . .. ......++
T Consensus 42 l~~~~vgiiG~G~IG~~va~~l~~fg-------~~v~~~d~~~~~-------~-~~----------------~~~~~~~l 90 (188)
T d1sc6a1 42 ARGKKLGIIGYGHIGTQLGILAESLG-------MYVYFYDIENKL-------P-LG----------------NATQVQHL 90 (188)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCC-------C-CT----------------TCEECSCH
T ss_pred ccceEEEEeecccchhhhhhhccccc-------ceEeeccccccc-------h-hh----------------hhhhhhhH
Confidence 34579999999999999999998888 899999986543 0 00 01233578
Q ss_pred HHHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 139 ENAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
++.++.+|+|++++|- ...+.++ ++....++++.++|.++.|-...
T Consensus 91 ~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvd 138 (188)
T d1sc6a1 91 SDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 138 (188)
T ss_dssp HHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBC
T ss_pred HHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhh
Confidence 8888999999999995 4554544 44556678899999998876554
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=2e-05 Score=66.49 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=56.2
Q ss_pred cCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
+|||||||+|.||.- ....+..... .++ .++++++++ .+.+.+.. ++...++.
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~~------~~i~~v~d~~~~~------~~~~~~~~-------------~~~~~~~~ 55 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAASD------WTLQGAWSPTRAK------ALPICESW-------------RIPYADSL 55 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSS------EEEEEEECSSCTT------HHHHHHHH-------------TCCBCSSH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCC------cEEEEEEechhHh------hhhhhhcc-------------cccccccc
Confidence 479999999999975 5666665431 554 478888776 44444321 12345677
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
++...+.|+|++|+|+....++......
T Consensus 56 ~~l~~~~D~V~I~tp~~~h~~~~~~al~ 83 (164)
T d1tlta1 56 SSLAASCDAVFVHSSTASHFDVVSTLLN 83 (164)
T ss_dssp HHHHTTCSEEEECSCTTHHHHHHHHHHH
T ss_pred hhhhhhcccccccccchhcccccccccc
Confidence 7777899999999999776666655544
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.88 E-value=2.5e-05 Score=65.44 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=65.6
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
.+.|||+|||+ |.+|+.++..|+..++..........+++.+......+.+...+... .......+..+++
T Consensus 2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 73 (154)
T d1y7ta1 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC--------AFPLLAGLEATDD 73 (154)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT--------TCTTEEEEEEESC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcc--------ccccccccccCCc
Confidence 35689999997 99999999999987642211111223333322110001111111110 1111224556677
Q ss_pred HHHHhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 138 LENAVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..++++++|+||++--. . .++++.+.+.++.+++.+++..+|.++
T Consensus 74 ~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD 134 (154)
T d1y7ta1 74 PKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN 134 (154)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred hhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence 77789999999998732 1 234444556666566788888888554
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.87 E-value=7.7e-06 Score=71.77 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=69.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-++|+|||.|.+|..+|..|..-| .+|..|++.... .. . .... ..+.+
T Consensus 44 ~~ktvgIiG~G~IG~~va~~l~~fg-------~~v~~~d~~~~~------~~---~--------------~~~~-~~~l~ 92 (199)
T d1dxya1 44 GQQTVGVMGTGHIGQVAIKLFKGFG-------AKVIAYDPYPMK------GD---H--------------PDFD-YVSLE 92 (199)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCCS------SC---C--------------TTCE-ECCHH
T ss_pred cceeeeeeecccccccccccccccc-------eeeeccCCccch------hh---h--------------cchh-HHHHH
Confidence 3478999999999999999998888 899999986543 00 0 0112 24677
Q ss_pred HHhcCCCEEEEccCc-chHHHHH-HHHhccCCCCcEEEEeecCcccC
Q 014757 140 NAVKDANMLVFVTPH-QFMEGIC-KRLVGKVNGDVEAISLIKGMEVK 184 (419)
Q Consensus 140 ea~~~aDlVilavp~-~~~~~vl-~~l~~~l~~~tiivs~~nGi~~~ 184 (419)
+.+..+|+|++++|- ...+.++ ++....+++++++|....|-...
T Consensus 93 ~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvd 139 (199)
T d1dxya1 93 DLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLID 139 (199)
T ss_dssp HHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBC
T ss_pred HHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhh
Confidence 888999999999996 4444444 34456678999999998876653
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.85 E-value=7.5e-06 Score=69.78 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=49.4
Q ss_pred cCeEEEECcchHHHHHH--HHHHHcCCCCCCCC-ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGSGNWGSVAS--KLIASNTLRLSSFH-DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA--~~La~~G~~~~~~~-~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..||+|||+|..|++.+ ..+...- +++ .++.++|.++++ .+...+.++... .....+..+..++|
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~----~l~~~eivL~Did~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~d 70 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLE----EFPIRKLKLYDNDKER--QDRIAGACDVFI------REKAPDIEFAATTD 70 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTT----TSCEEEEEEECSCHHH--HHHHHHHHHHHH------HHHCTTSEEEEESC
T ss_pred CceEEEECCChhhhHHHHHHHHhhhh----hcCCCEEEEEcCChhH--HHHHHHHHHHHH------HHhCCCcceEecCC
Confidence 46999999999987643 3333221 111 489999998765 111111111100 00011234667889
Q ss_pred HHHHhcCCCEEEEccCc
Q 014757 138 LENAVKDANMLVFVTPH 154 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~ 154 (419)
..+++++||+||++.-.
T Consensus 71 ~~eal~~AD~Vvitag~ 87 (167)
T d1u8xx1 71 PEEAFTDVDFVMAHIRV 87 (167)
T ss_dssp HHHHHSSCSEEEECCCT
T ss_pred hhhccCCCCEEEECCCc
Confidence 88889999999999853
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.79 E-value=1.9e-05 Score=66.91 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=49.2
Q ss_pred CeEEEECcchHHHHHHHH-HHHcCCCCCCCC-ceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 62 SKVTVVGSGNWGSVASKL-IASNTLRLSSFH-DEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~-La~~G~~~~~~~-~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|||+|||+|+.|.+++.. |++.- .+++ .++.++|.++++ .+. ...+..... ..+..+..+++..
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~---~~~~~~el~L~Did~~k--~~~-~~d~~~~~~--------~~~~~~~~t~~~~ 66 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDIS---EDVRIDEVIFYDIDEEK--QKI-VVDFVKRLV--------KDRFKVLISDTFE 66 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHT---TTSCCCEEEEECSCHHH--HHH-HHHHHHHHH--------TTSSEEEECSSHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcc---cccCccEEEEEecCcHH--HHH-HHHHHHhhh--------ccCceEEEecCcc
Confidence 899999999999887754 33221 0011 589999998765 111 111111100 0122456778888
Q ss_pred HHhcCCCEEEEccCc
Q 014757 140 NAVKDANMLVFVTPH 154 (419)
Q Consensus 140 ea~~~aDlVilavp~ 154 (419)
+++.+||+||++.-.
T Consensus 67 ~~l~~aDvVVita~~ 81 (162)
T d1up7a1 67 GAVVDAKYVIFQFRP 81 (162)
T ss_dssp HHHTTCSEEEECCCT
T ss_pred cccCCCCEEEEeccc
Confidence 889999999998764
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.79 E-value=4.1e-05 Score=65.12 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=59.2
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|.++||+|||+|.||..++..+.+... .++ .+++++++. .+ . .+.....+
T Consensus 1 M~kirvgiiG~G~ig~~~~~~l~~~~~------~elvav~~~~~~~------~~---~--------------~~~~~~~~ 51 (170)
T d1f06a1 1 MTNIRVAIVGYGNLGRSVEKLIAKQPD------MDLVGIFSRRATL------DT---K--------------TPVFDVAD 51 (170)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSS------EEEEEEEESSSCC------SS---S--------------SCEEEGGG
T ss_pred CCcceEEEECChHHHHHHHHHHHhCCC------cEEEEEEeccccc------cc---c--------------cccccchh
Confidence 456899999999999999999987531 454 466776543 00 0 12334555
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
.++...+.|+|++|+|+....++.... +..|.-+|.+.+
T Consensus 52 ~~~~~~~~D~Vvi~tp~~~h~~~a~~a---L~aG~~vv~~~~ 90 (170)
T d1f06a1 52 VDKHADDVDVLFLCMGSATDIPEQAPK---FAQFACTVDTYD 90 (170)
T ss_dssp GGGTTTTCSEEEECSCTTTHHHHHHHH---HTTTSEEECCCC
T ss_pred hhhhccccceEEEeCCCcccHHHHHHH---HHCCCcEEEecC
Confidence 556667899999999997766655443 345665655443
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.76 E-value=1.7e-05 Score=64.77 Aligned_cols=111 Identities=14% Similarity=-0.026 Sum_probs=78.8
Q ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHH---H-HHhhhccCCCCHHHHH
Q 014757 274 VDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKV---A-EAFAKNEGKRSFDDLE 349 (419)
Q Consensus 274 ~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~---g-~~l~~~g~~~~~~~~~ 349 (419)
...+|+.+|........++.|+..++++. |++++++++.. ..+. ..+..+ + ..+.. ++ +++..
T Consensus 4 g~~~Kl~nN~l~~~~~~~~aEal~la~~~--Gld~~~~~~vl------~~s~-~~s~~~~~~~p~~~~~-~~-~~~~f-- 70 (132)
T d2cvza1 4 GHAVKAINNALLAVNLWAAGEGLLALVKQ--GVSAEKALEVI------NASS-GRSNATENLIPQRVLT-RA-FPKTF-- 70 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHH------TTST-TCBHHHHHTHHHHTTT-SC-CCCSS--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHH------Hhhh-hhhhhhhhhhhHHHHH-Hh-hhhhh--
Confidence 33445567777788899999999999999 58999988742 1111 122221 2 22333 21 32211
Q ss_pred HHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhc
Q 014757 350 AEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSER 405 (419)
Q Consensus 350 ~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~ 405 (419)
......||++++.++|++.|+ ++|+.+.+.+.+ .++.|..++++++++
T Consensus 71 ------~~~~~~KDl~l~~~~a~~~g~--~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~ 125 (132)
T d2cvza1 71 ------ALGLLVKDLGIAMGVLDGEKA--PSPLLRLAREVYEMAKRELGPDADHVEALRLLER 125 (132)
T ss_dssp ------BHHHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred ------HHHHHhhHHHHHHHHHHHcCC--CChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 223458899999999999999 999999999888 478899999999987
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.72 E-value=4.4e-05 Score=65.53 Aligned_cols=97 Identities=10% Similarity=0.087 Sum_probs=63.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
++||||||+|.||...+..|..... .+|. ++++++++ .+.+.+.. .++...+..++.+
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~~~------~~i~ai~d~~~~~------~~~~~~~~---------~~~~~~~~~~~~~ 59 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLAPN------ATISGVASRSLEK------AKAFATAN---------NYPESTKIHGSYE 59 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTT------EEEEEEECSSHHH------HHHHHHHT---------TCCTTCEEESSHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHhCCC------CEEEEEEeCCccc------cccchhcc---------ccccceeecCcHH
Confidence 4799999999999999999987641 5665 66777654 34443321 1122345678888
Q ss_pred HHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+. +.|+|++|+|+..-.+.+....+ .+.-| .+-|.+.
T Consensus 60 ~ll~~~~iD~v~I~tp~~~h~~~~~~~l~---~g~~v-~~EKP~~ 100 (184)
T d1ydwa1 60 SLLEDPEIDALYVPLPTSLHVEWAIKAAE---KGKHI-LLEKPVA 100 (184)
T ss_dssp HHHHCTTCCEEEECCCGGGHHHHHHHHHT---TTCEE-EECSSCS
T ss_pred Hhhhccccceeeecccchhhcchhhhhhh---cccee-ecccccc
Confidence 8664 68999999999776666555443 34333 3445443
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.67 E-value=6.9e-05 Score=61.80 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=62.6
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.||+||| +|.+|+.+|..|..++.. .++.++|++......+..+..+.. ... + ..+..++ +.+.++
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~-----~el~L~Di~~~~~~~~g~a~Dl~~-~~~---~---~~~~~i~-~~~~~~ 67 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIA-----DEVVFVDIPDKEDDTVGQAADTNH-GIA---Y---DSNTRVR-QGGYED 67 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCC-----SEEEEECCGGGHHHHHHHHHHHHH-HHT---T---TCCCEEE-ECCGGG
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCC-----CEEEEEecCCcccccceeecchhh-ccc---c---cCCceEe-eCCHHH
Confidence 4899999 699999999999999842 479999964321000000111221 000 0 0111233 345554
Q ss_pred HhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 141 AVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 141 a~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+.+||+|+++.-. . -++++.+.+.++ .++.+++..+|.++
T Consensus 68 -~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~ivvtNPvD 123 (142)
T d1o6za1 68 -TAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVD 123 (142)
T ss_dssp -GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSHH
T ss_pred -hhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEEecChHH
Confidence 7899999998542 1 133344555544 46788888888654
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.62 E-value=0.00014 Score=62.08 Aligned_cols=115 Identities=12% Similarity=0.078 Sum_probs=68.8
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
+..||+|+|+ |.+|+.++..|++....-.+...++.+++.+......+.+.-.+..- .......+..+++.
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~--------a~~~~~~~~~~~~~ 94 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS--------LYPLLREVSIGIDP 94 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT--------TCTTEEEEEEESCH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc--------ccccccCccccccc
Confidence 3458999996 99999999999986532222223566777654320001111111111 01112245667888
Q ss_pred HHHhcCCCEEEEccCc-----c-----------hHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 139 ENAVKDANMLVFVTPH-----Q-----------FMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 139 ~ea~~~aDlVilavp~-----~-----------~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.++..++|+||++--. . -++++.+.+.++.+++.+|+..+|.++
T Consensus 95 ~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd 154 (175)
T d7mdha1 95 YEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN 154 (175)
T ss_dssp HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred hhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence 8889999999998732 1 244445566666666788888888543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.59 E-value=6e-05 Score=63.64 Aligned_cols=81 Identities=7% Similarity=0.109 Sum_probs=53.4
Q ss_pred CeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||+|||+|.||.. ....|.+.+. .++.+++++++. .+.+.+.-.. ....++.++
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~------~~~~~~d~~~~~------~~~~~~~~~~------------~~~~~~~~~ 57 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPD------IELVLCTRNPKV------LGTLATRYRV------------SATCTDYRD 57 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTT------EEEEEECSCHHH------HHHHHHHTTC------------CCCCSSTTG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCC------cEEEEEECCHHH------HHHHHHhccc------------ccccccHHH
Confidence 79999999999976 5566665541 577778776554 4444432100 013455555
Q ss_pred Hhc-CCCEEEEccCcchHHHHHHHHhc
Q 014757 141 AVK-DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 141 a~~-~aDlVilavp~~~~~~vl~~l~~ 166 (419)
.+. +.|+|++|+|+....+++.....
T Consensus 58 ll~~~iD~V~I~tp~~~H~~~~~~al~ 84 (167)
T d1xeaa1 58 VLQYGVDAVMIHAATDVHSTLAAFFLH 84 (167)
T ss_dssp GGGGCCSEEEECSCGGGHHHHHHHHHH
T ss_pred hcccccceecccccccccccccccccc
Confidence 543 68999999999877777766554
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.58 E-value=3.7e-05 Score=62.79 Aligned_cols=112 Identities=14% Similarity=-0.006 Sum_probs=75.8
Q ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCcccHHHHH----------HhhhccCCC
Q 014757 274 VDGLEMGNNTKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRNRKVAE----------AFAKNEGKR 343 (419)
Q Consensus 274 ~~~~~~~~n~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn~~~g~----------~l~~~g~~~ 343 (419)
...+|+.+|........++.|+..++++. |++++++.+... .+. +++..+-. .+.. ++ +
T Consensus 5 G~~~Kl~~N~l~~~~~~a~aEal~la~~~--Gld~~~~~eil~------~~~-g~s~~~~~~~~~~~~~~~~~~~-~~-~ 73 (134)
T d3cuma1 5 GQVAKVCNNQLLAVLMIGTAEAMALGVAN--GLEAKVLAEIMR------RSS-GGNWALEVYNPWPGVMENAPAS-RD-Y 73 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHH------TST-TCCHHHHHCCCSTTSSTTSGGG-GT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHH------hcc-cchhhhhhhhhhhhccchhhhc-CC-C
Confidence 34455667777788889999999999999 589999887421 111 12211111 0111 10 1
Q ss_pred CHHHHHHHHhcCCeeehHHHHHHHHHHHHHcCCCcCCcHHHHHHHHH-------hCCCCHHHHHHHHhcC
Q 014757 344 SFDDLEAEMLQGQKLQGVSTAREVYEVLSHRGWLELFPLFATVHEIC-------VGHLPPSAIVEYSERK 406 (419)
Q Consensus 344 ~~~~~~~~~~~g~~~Eg~~~~~~v~~~a~~~gv~~~~P~~~~~~~~l-------~~~~~~~~~~~~~~~~ 406 (419)
.+.. ......||++++.++|++.|+ ++|+.+.+.+++ +++.|...++++++..
T Consensus 74 ~~~f--------~~~l~~KDl~l~~~~a~~~g~--~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~~ 133 (134)
T d3cuma1 74 SGGF--------MAQLMAKDLGLAQEAAQASAS--STPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPT 133 (134)
T ss_dssp CSSS--------BHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTT
T ss_pred CCCc--------chHHHHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCC
Confidence 1100 122447899999999999999 999999988888 4788999999888753
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=8.9e-05 Score=63.47 Aligned_cols=85 Identities=11% Similarity=0.075 Sum_probs=56.3
Q ss_pred CCcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
|.++||+|||+|.||.. ....+.+.+. ..+|. ++++++++ .+.+.+... ....++
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~-----~~~i~~v~d~~~~~------~~~~~~~~~------------~~~~~~ 57 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSH-----LFEITAVTSRTRSH------AEEFAKMVG------------NPAVFD 57 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTT-----TEEEEEEECSSHHH------HHHHHHHHS------------SCEEES
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCC-----CeEEEEEEeccHhh------hhhhhcccc------------ccceee
Confidence 45679999999999986 4666765431 03554 67777654 344433210 123567
Q ss_pred CHHHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014757 137 DLENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 137 ~~~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
+.++.+. +.|+|++|+|+....+++..+..
T Consensus 58 ~~~ell~~~~id~v~I~tp~~~h~~~~~~al~ 89 (181)
T d1zh8a1 58 SYEELLESGLVDAVDLTLPVELNLPFIEKALR 89 (181)
T ss_dssp CHHHHHHSSCCSEEEECCCGGGHHHHHHHHHH
T ss_pred eeeccccccccceeeccccccccccccccccc
Confidence 8888765 58999999999877777766554
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=1.4e-05 Score=69.84 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=51.0
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
|.|+||.|+| +|.+|+.++..|.++| ++|+++.|++++ .......+... +...+.-..+
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g-------~~V~~~~R~~~~------~~~~~~~~~~~-------~~gD~~d~~~ 60 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAG-------YEVTVLVRDSSR------LPSEGPRPAHV-------VVGDVLQAAD 60 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTT-------CEEEEEESCGGG------SCSSSCCCSEE-------EESCTTSHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc-------CEEEEEEcChhh------ccccccccccc-------ccccccchhh
Confidence 6789999999 5999999999999999 999999998764 11111111100 0001111123
Q ss_pred HHHHhcCCCEEEEccCc
Q 014757 138 LENAVKDANMLVFVTPH 154 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~ 154 (419)
.++++.++|+||.++..
T Consensus 61 l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 61 VDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp HHHHHTTCSEEEECCCC
T ss_pred HHHHhcCCCEEEEEecc
Confidence 45568899999998853
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=4.7e-05 Score=64.69 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=60.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
++|.|+|+|..+.+++..|.+.| .+|++++|+.++ .+.+++.+...+ .++..+..+..
T Consensus 19 k~vlIlGaGGaarai~~al~~~g-------~~i~I~nRt~~k--a~~l~~~~~~~~-------------~~~~~~~~~~~ 76 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLD-------CAVTITNRTVSR--AEELAKLFAHTG-------------SIQALSMDELE 76 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSHHH--HHHHHHHTGGGS-------------SEEECCSGGGT
T ss_pred CEEEEECCcHHHHHHHHHhcccc-------eEEEeccchHHH--HHHHHHHHhhcc-------------ccccccccccc
Confidence 68999999999999999999999 789999999766 222222222211 12232222222
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
...+|+||-|+|.-...+....-...++++++++++.
T Consensus 77 ~~~~dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~v 113 (170)
T d1nyta1 77 GHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMF 113 (170)
T ss_dssp TCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESC
T ss_pred ccccceeecccccCcccCCCCCcHHHhccCcEEEEee
Confidence 4579999999997432221111123466788888875
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00022 Score=59.81 Aligned_cols=88 Identities=13% Similarity=0.119 Sum_probs=63.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++++|+|.|.+|..+|..+...| ..|++++++| .++++..- . ..+ ..+.++
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~rg~G-------~~V~v~e~dp--------~~al~A~~------d------G~~-v~~~~~ 75 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALRGFG-------ARVIITEIDP--------INALQAAM------E------GYE-VTTMDE 75 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCH--------HHHHHHHH------T------TCE-ECCHHH
T ss_pred CCEEEEeccccccHHHHHHHHhCC-------CeeEeeeccc--------chhHHhhc------C------ceE-eeehhh
Confidence 368999999999999999999999 8999999987 34444421 0 112 245678
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++..+|++|.++....+-. .+-.+.++++.++....
T Consensus 76 a~~~adivvtaTGn~~vI~--~eh~~~MKdgaIL~N~G 111 (163)
T d1li4a1 76 ACQEGNIFVTTTGCIDIIL--GRHFEQMKDDAIVCNIG 111 (163)
T ss_dssp HTTTCSEEEECSSCSCSBC--HHHHTTCCTTEEEEECS
T ss_pred hhhhccEEEecCCCccchh--HHHHHhccCCeEEEEec
Confidence 8899999999998754311 12235578888887763
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.35 E-value=0.0014 Score=53.92 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=58.3
Q ss_pred CeEEEEC-cchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|||+||| +|..|.-+.+.|.+. .+.. .++..+..+... |..+.+..... .+....+.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~----~~i~~~ss~~~~-------------gk~~~~~~~~~---~~~~~~~~- 59 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDL----IEPVFFSTSQIG-------------VPAPNFGKDAG---MLHDAFDI- 59 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGG----SEEEEEESSCCS-------------SBCCCSSSCCC---BCEETTCH-
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCc----eEEEEecccccc-------------ccccccCCcce---eeecccch-
Confidence 7999999 599999999877653 2100 244444433221 11111111110 11222343
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
+...++|+||+|+|.....++...+... +..++||+++.-.
T Consensus 60 ~~~~~~DvvF~alp~~~s~~~~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 60 ESLKQLDAVITCQGGSYTEKVYPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp HHHTTCSEEEECSCHHHHHHHHHHHHHT-TCCSEEEESSSTT
T ss_pred hhhccccEEEEecCchHHHHHhHHHHHc-CCceEEEeCCccc
Confidence 3468999999999998888887776653 2346899988643
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.00054 Score=56.51 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=59.3
Q ss_pred cCeEEEECc-chHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
|+||||||+ |.+|.-+...|.+. .+. ..+++...+++.. +..+.+.... . ......+.
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p----~~~l~~~~ss~s~-------------g~~~~~~~~~-~--~~~~~~~~ 60 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFD----AIRPVFFSTSQLG-------------QAAPSFGGTT-G--TLQDAFDL 60 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGG----GSEEEEEESSSTT-------------SBCCGGGTCC-C--BCEETTCH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCC----eeEEEEeeccccc-------------cccccccCCc-e--eeecccch
Confidence 679999996 99999999876654 210 0345656554322 1111110000 0 01122333
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
. ...++|++|+|+|...-..+...+... +.+.+||+.+.-.
T Consensus 61 ~-~~~~~DivF~a~~~~~s~~~~~~~~~~-g~~~~VID~Ss~f 101 (146)
T d1t4ba1 61 E-ALKALDIIVTCQGGDYTNEIYPKLRES-GWQGYWIDAASSL 101 (146)
T ss_dssp H-HHHTCSEEEECSCHHHHHHHHHHHHHT-TCCCEEEECSSTT
T ss_pred h-hhhcCcEEEEecCchHHHHhhHHHHhc-CCCeecccCCccc
Confidence 3 467999999999998877777776553 3346888887633
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.30 E-value=0.00044 Score=57.81 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=53.0
Q ss_pred CCcCeEEEECcchHHHH-HHHHHHHcCCCCCCCCceEEE-EecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVGSGNWGSV-ASKLIASNTLRLSSFHDEVRM-WVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~-lA~~La~~G~~~~~~~~~V~l-~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
..++||||||+|.+|.- +...|.+... .++.. .+|+++. .. .+.-++.+.. ....
T Consensus 2 ~kkirvaIIGaG~ig~~~~~~~l~~~~~------~el~avas~~~~~---~~-~~~a~~~~i~-------------~~~~ 58 (157)
T d1nvmb1 2 NQKLKVAIIGSGNIGTDLMIKVLRNAKY------LEMGAMVGIDAAS---DG-LARAQRMGVT-------------TTYA 58 (157)
T ss_dssp CSCEEEEEECCSHHHHHHHHHHHHHCSS------EEEEEEECSCTTC---HH-HHHHHHTTCC-------------EESS
T ss_pred CCCcEEEEEcCcHHHHHHHHHHHhhCCc------ceEEEEEecchhc---cc-hhhhhhcCCc-------------cccc
Confidence 45689999999999985 5666654431 46554 4666543 01 1111222211 1112
Q ss_pred CHHHH-----hcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeec
Q 014757 137 DLENA-----VKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 137 ~~~ea-----~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
+.++. ..+.|+||+|||.. ..+... ....++.|..+|+.+.
T Consensus 59 ~~d~l~~~~~~~~iDiVf~ATpag~h~~~~~--~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 59 GVEGLIKLPEFADIDFVFDATSASAHVQNEA--LLRQAKPGIRLIDLTP 105 (157)
T ss_dssp HHHHHHHSGGGGGEEEEEECSCHHHHHHHHH--HHHHHCTTCEEEECST
T ss_pred ceeeeeecccccccCEEEEcCCchhHHHhHH--HHHHHHcCCEEEEccc
Confidence 22221 24689999999974 333221 1122356889998875
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.30 E-value=0.00024 Score=57.43 Aligned_cols=92 Identities=14% Similarity=0.207 Sum_probs=66.2
Q ss_pred CCcCeEEEECc----chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe
Q 014757 59 LHKSKVTVVGS----GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 59 ~~~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~ 134 (419)
.+..+|+|||+ |.+|..+.+.|.+.|. .+|+.++...+. +. +++.
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~------g~v~pVnP~~~~---------i~----------------G~~~ 54 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKK------GKVYPVNIKEEE---------VQ----------------GVKA 54 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCS------SEEEEECSSCSE---------ET----------------TEEC
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCC------CcEEEeccCccc---------cC----------------CeEe
Confidence 34578999997 8999999999876551 588888765422 11 2456
Q ss_pred cCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 135 DPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
..++.|.-...|++++++|+..+.++++++... + -.-++.++.|+..
T Consensus 55 y~sl~dlp~~vDlvvi~vp~~~~~~~~~~~~~~-g-~~~~vi~s~Gf~e 101 (129)
T d2csua1 55 YKSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEK-G-VKGVVIITAGFGE 101 (129)
T ss_dssp BSSTTSCSSCCSEEEECSCHHHHHHHHHHHHHH-T-CCEEEECCCSSTT
T ss_pred ecchhhcCCCCceEEEecChHHhHHHHHHHHHc-C-CCEEEEecccccc
Confidence 677776555789999999999999999887753 1 2345566777753
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.30 E-value=3.9e-05 Score=65.41 Aligned_cols=97 Identities=8% Similarity=0.022 Sum_probs=57.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..++|.|+|+|.++.+++..|.+.+ .+|++++|+.++ .+.+++.+...+ ++......+
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~-------~~i~I~nR~~~~--a~~l~~~~~~~~-------------~~~~~~~~~ 74 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQ-------QNIVLANRTFSK--TKELAERFQPYG-------------NIQAVSMDS 74 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTT-------CEEEEEESSHHH--HHHHHHHHGGGS-------------CEEEEEGGG
T ss_pred CCCEEEEECCcHHHHHHHHHHcccC-------ceeeeccchHHH--HHHHHHHHhhcc-------------ccchhhhcc
Confidence 3468999999999999999999866 789999999766 333334333221 122222212
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
....++|+||-|+|..............++++.+++++.
T Consensus 75 ~~~~~~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~v 113 (171)
T d1p77a1 75 IPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQ 113 (171)
T ss_dssp CCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESC
T ss_pred ccccccceeeecccccccccccchhhhhhcccceeeeee
Confidence 225689999999997532222111111223466677664
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00027 Score=53.51 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=32.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.-+||+|+|+|..|.+.|+.|.+.| .+|++||.+..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g-------~~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARG-------VTPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTT-------CCCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCC-------CEEEEeeCCcC
Confidence 4468999999999999999999999 89999998654
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.19 E-value=0.00021 Score=58.94 Aligned_cols=97 Identities=15% Similarity=0.252 Sum_probs=60.3
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.|||+|||+ |..|.-+.+.|.+..+.. .++..+..+... ++. +...+ + .........
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~----~~l~~~~s~~~~--Gk~----i~~~~------~------~~~~~~~~~ 59 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPL----HRLHLLASAESA--GQR----MGFAE------S------SLRVGDVDS 59 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCC----SCEEEEECTTTT--TCE----EEETT------E------EEECEEGGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCc----eEEEEEeecccC--Ccc----eeecc------c------cchhccchh
Confidence 589999996 999999999998755211 466666544322 111 11100 0 111111112
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+...++|++|+|+|..........+.. .+.+||+++.-.-
T Consensus 60 ~~~~~~d~vf~a~p~~~s~~~~~~~~~---~g~~VID~Ss~fR 99 (144)
T d2hjsa1 60 FDFSSVGLAFFAAAAEVSRAHAERARA---AGCSVIDLSGALE 99 (144)
T ss_dssp CCGGGCSEEEECSCHHHHHHHHHHHHH---TTCEEEETTCTTT
T ss_pred hhhccceEEEecCCcchhhhhcccccc---CCceEEeechhhc
Confidence 235689999999999877777666543 5789999876443
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00095 Score=55.95 Aligned_cols=126 Identities=12% Similarity=0.085 Sum_probs=77.8
Q ss_pred CCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceE-EEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 59 LHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEV-RMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 59 ~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V-~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
...+||+|+|+ |.||..++..+.+... .++ ..++|.... .+.. ....+.+. -+.++..+.
T Consensus 2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~------~~lv~~~~~~~~~--------~~g~---d~~~~~~~-~~~~~~~~~ 63 (162)
T d1diha1 2 DANIRVAIAGAGGRMGRQLIQAALALEG------VQLGAALEREGSS--------LLGS---DAGELAGA-GKTGVTVQS 63 (162)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTT------EECCCEECCTTCT--------TCSC---CTTCSSSS-SCCSCCEES
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecccch--------hccc---hhhhhhcc-ccCCceeec
Confidence 34689999995 9999999999887741 454 345554322 0110 00000010 122355677
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcchH
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANIA 212 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~a 212 (419)
++++....+|+||=.+.+....+.++.... .+..+|.-|+|+..+ .. +.+++. ....+++..|++.
T Consensus 64 ~~~~~~~~~DViIDFs~p~~~~~~~~~a~~---~~~~~ViGTTG~~~~-----~~-~~i~~~-a~~ipi~~apN~S 129 (162)
T d1diha1 64 SLDAVKDDFDVFIDFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEA-----GK-QAIRDA-AADIAIVFAANFS 129 (162)
T ss_dssp CSTTTTTSCSEEEECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHH-----HH-HHHHHH-TTTSCEEECSCCC
T ss_pred cHHHHhcccceEEEeccHHHHHHHHHHHHh---ccceeEEecCCCcHH-----HH-HHHHHH-cCCCCEEEEcccc
Confidence 777777899999999999888777766544 367788888898642 11 334443 3334567777753
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.14 E-value=0.0012 Score=53.01 Aligned_cols=96 Identities=9% Similarity=0.096 Sum_probs=65.5
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEE-EecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRM-WVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l-~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|||+|+|+ |.||..++..+.+.+ +++.. ++++. .
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~-------~~l~~~id~~~-------------------------------------~ 36 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG-------HELVLKVDVNG-------------------------------------V 36 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEEETTE-------------------------------------E
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC-------CeEEEEECCCc-------------------------------------H
Confidence 79999995 999999999888887 66543 22210 0
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHhCCceEEEeCcch
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQLGVSCCVLMGANI 211 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~g~~~~v~~gp~~ 211 (419)
+.+.++|+||=.+.+..+.+.++....+ +..+|.-|+|+..+ . .+.+++. ..+.+++..|+.
T Consensus 37 ~~~~~~DVvIDFS~p~~~~~~l~~~~~~---~~p~ViGTTG~~~~-----~-~~~i~~~-ak~~pv~~a~N~ 98 (128)
T d1vm6a3 37 EELDSPDVVIDFSSPEALPKTVDLCKKY---RAGLVLGTTALKEE-----H-LQMLREL-SKEVPVVQAYSR 98 (128)
T ss_dssp EECSCCSEEEECSCGGGHHHHHHHHHHH---TCEEEECCCSCCHH-----H-HHHHHHH-TTTSEEEECSCT
T ss_pred HHhccCCEEEEecCHHHHHHHHHHHHhc---CCCEEEEcCCCCHH-----H-HHHHHHH-HhhCCEEeeecc
Confidence 1245689999999998888887765543 66788888888642 1 2334443 334566666664
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.14 E-value=0.00049 Score=54.48 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=32.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..||+|||+|.+|.-+|..|++.| .+|+++.|.+..
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g-------~~Vtlv~~~~~i 57 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLG-------IDSYIFARGNRI 57 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTT-------CEEEEECSSSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhcc-------ccceeeehhccc
Confidence 478999999999999999999999 899999997653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.13 E-value=0.00014 Score=61.30 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=67.8
Q ss_pred CCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCc-CCccCCCCccCCCeEe
Q 014757 56 DGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNE-NVKYLPGIKLGKNVVA 134 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~-~~~~~~~~~l~~~i~~ 134 (419)
++....-||.|||+|..|..-++.....| -+|+++|.+.++ .+.++.... +... ....
T Consensus 27 ~~gv~pa~V~ViGaGvaG~~A~~~A~~lG-------A~V~~~D~~~~~------l~~l~~~~~~~~~~--------~~~~ 85 (168)
T d1pjca1 27 VPGVKPGKVVILGGGVVGTEAAKMAVGLG-------AQVQIFDINVER------LSYLETLFGSRVEL--------LYSN 85 (168)
T ss_dssp BTTBCCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCHHH------HHHHHHHHGGGSEE--------EECC
T ss_pred CCCCCCcEEEEECCChHHHHHHHHHhhCC-------CEEEEEeCcHHH------HHHHHHhhccccee--------ehhh
Confidence 34455679999999999999999999999 899999998755 455544211 1100 0001
Q ss_pred cCCHHHHhcCCCEEEEccCcc--hHHH-HHHHHhccCCCCcEEEEee
Q 014757 135 DPDLENAVKDANMLVFVTPHQ--FMEG-ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp~~--~~~~-vl~~l~~~l~~~tiivs~~ 178 (419)
...+++.+.++|+||-++--. .-.. +-++....++++.+||++.
T Consensus 86 ~~~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 86 SAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp HHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhHHHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence 123456788999999998531 1111 1134456678999999985
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.10 E-value=0.00092 Score=56.82 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=60.0
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
|+||+|+| +|..|.-+.+.|+++-. .++..+..+... ++.+. .+... ..... .....+++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~------~ei~~l~s~~~a--G~~i~-~~~p~-----~~~~~-----~~~~~~~~ 61 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPE------AKITYLSSRTYA--GKKLE-EIFPS-----TLENS-----ILSEFDPE 61 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT------EEEEEEECSTTT--TSBHH-HHCGG-----GCCCC-----BCBCCCHH
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCC------ceEEEeeccccC--CCccc-ccCch-----hhccc-----cccccCHh
Confidence 78999999 59999999999988652 566655433322 33332 11110 00110 11224555
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
+...++|++|+|+|...-.+.. +.. .+..||+++.-.-
T Consensus 62 ~~~~~~dvvf~a~p~~~s~~~~----~~~-~~~~VIDlSadfR 99 (176)
T d1vkna1 62 KVSKNCDVLFTALPAGASYDLV----REL-KGVKIIDLGADFR 99 (176)
T ss_dssp HHHHHCSEEEECCSTTHHHHHH----TTC-CSCEEEESSSTTT
T ss_pred HhccccceEEEccccHHHHHHH----Hhh-ccceEEecCcccc
Confidence 5556899999999997654443 323 4788999986543
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.04 E-value=0.00021 Score=67.34 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=66.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
...+++|||+|..+..-+..+..- +. .+|.+|+|+++. .+++++.+.+. .+ ..+..+.++
T Consensus 127 da~~l~iiG~G~QA~~~~~a~~~v~~i------~~V~v~~r~~~~--~~~~~~~l~~~-------~g----~~v~~~~s~ 187 (340)
T d1x7da_ 127 NARKMALIGNGAQSEFQALAFHKHLGI------EEIVAYDTDPLA--TAKLIANLKEY-------SG----LTIRRASSV 187 (340)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCC------CEEEEECSSHHH--HHHHHHHHTTC-------TT----CEEEECSSH
T ss_pred CCceEEEEcccHHHHHHHHHHhhhcce------eeeEEEecChHH--HHHHHHhhhhc-------cC----CCceecCCH
Confidence 346899999999999888877653 22 689999999765 33444444321 11 135678899
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
++++++||+|+.||.+.....+++ ..++++++.|..+
T Consensus 188 ~eav~~ADIi~t~Tas~s~~Pv~~--~~~l~pG~hI~ai 224 (340)
T d1x7da_ 188 AEAVKGVDIITTVTADKAYATIIT--PDMLEPGMHLNAV 224 (340)
T ss_dssp HHHHTTCSEEEECCCCSSEEEEEC--GGGCCTTCEEEEC
T ss_pred HHHHhcCCceeeccccCCCCcccc--hhhcCCCCEEeec
Confidence 999999999999996543222221 2467788777654
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.03 E-value=0.0017 Score=51.21 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=68.4
Q ss_pred CeEEEEC----cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 62 SKVTVVG----SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 62 mkI~IIG----aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
++|+||| .|..|..+...|.+.| ++|+.++.+.+. +. +.++..+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g-------~~V~pVnP~~~~---------i~----------------G~~~y~s 49 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKG-------FEVLPVNPNYDE---------IE----------------GLKCYRS 49 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT-------CEEEEECTTCSE---------ET----------------TEECBSS
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCC-------CEEEEEcccccc---------cc----------------Ccccccc
Confidence 5799999 4789999999999999 888877654321 21 2456677
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhH
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQ 198 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~ 198 (419)
+++.-...|++++++|+..+.++++++... +.-.+.++.|... ..+.+.+++.
T Consensus 50 l~~lp~~~D~vvi~vp~~~~~~~l~~~~~~---g~k~v~~~~g~~~-----~~~~~~a~~~ 102 (116)
T d1y81a1 50 VRELPKDVDVIVFVVPPKVGLQVAKEAVEA---GFKKLWFQPGAES-----EEIRRFLEKA 102 (116)
T ss_dssp GGGSCTTCCEEEECSCHHHHHHHHHHHHHT---TCCEEEECTTSCC-----HHHHHHHHHH
T ss_pred chhccccceEEEEEeCHHHHHHHHHHHHhc---CCceEEeccchhh-----HHHHHHHHHc
Confidence 777555679999999999999999887653 3334456666543 3344555543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.02 E-value=0.00096 Score=50.10 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=49.0
Q ss_pred CeEEEECcchHHH-HHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGS-VASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
|||-|||.|-+|. ++|..|.+.| ++|+..|+.+.. ..+.|++.|... ....+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G-------~~VsGSD~~~~~-----~t~~L~~~Gi~i------------~~gh~~~- 56 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNG-------NDVYGSNIEETE-----RTAYLRKLGIPI------------FVPHSAD- 56 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEECSSCCH-----HHHHHHHTTCCE------------ESSCCTT-
T ss_pred cEEEEEeECHHHHHHHHHHHHhCC-------CeEEEEeCCCCh-----hHHHHHHCCCeE------------Eeeeccc-
Confidence 7999999999997 7899999999 999999987532 357788877432 1122332
Q ss_pred HhcCCCEEEEccC
Q 014757 141 AVKDANMLVFVTP 153 (419)
Q Consensus 141 a~~~aDlVilavp 153 (419)
-+.++|+||.+.-
T Consensus 57 ~i~~~d~vV~SsA 69 (89)
T d1j6ua1 57 NWYDPDLVIKTPA 69 (89)
T ss_dssp SCCCCSEEEECTT
T ss_pred ccCCCCEEEEecC
Confidence 2567898877654
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.99 E-value=0.0028 Score=53.72 Aligned_cols=104 Identities=13% Similarity=0.245 Sum_probs=62.5
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
||||+||| +|..|.-+.+.|.++.. .++. +..+..+...++.+. ..... . .+. .........+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~------~ei~~l~~~s~~~~aGk~~~-~~~~~---~---~~~-~~~~~~~~~~~ 66 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPH------MTITALTVSAQSNDAGKLIS-DLHPQ---L---KGI-VDLPLQPMSDV 66 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTT------EEEEEEEEETTCTTTTCBHH-HHCGG---G---TTT-CCCBEEEESCG
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCC------CceEeeEeeccccccccccc-ccccc---c---ccc-cccccccchhh
Confidence 78999999 69999999999998742 5664 344432211122222 21110 0 000 00112233444
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
.....++|++|+|+|...-.+....+.. .+..+++++.-.
T Consensus 67 ~~~~~~~dvvf~alp~~~s~~~~~~~~~---~~~~vIDlSadf 106 (179)
T d2g17a1 67 RDFSADVDVVFLATAHEVSHDLAPQFLQ---AGCVVFDLSGAF 106 (179)
T ss_dssp GGTCTTCCEEEECSCHHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred hhhhcccceeeccccchhHHHHhhhhhh---cCceeecccccc
Confidence 4335689999999999877777666544 578899987543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.98 E-value=0.0012 Score=50.30 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=50.5
Q ss_pred CCCcCeEEEECcchHH-HHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGSGNWG-SVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG-~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
+.+++||-|||.|-.| +++|..|.+.| ++|+.+|+.... ..+.+.+.|.. +..-.
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G-------~~VsGSD~~~~~-----~~~~L~~~Gi~------------v~~g~ 60 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEG-------YQISGSDIADGV-----VTQRLAQAGAK------------IYIGH 60 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHT-------CEEEEEESCCSH-----HHHHHHHTTCE------------EEESC
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCC-------CEEEEEeCCCCh-----hhhHHHHCCCe------------EEECC
Confidence 4556799999999999 67799999999 999999987532 24666666632 22223
Q ss_pred CHHHHhcCCCEEEEccC
Q 014757 137 DLENAVKDANMLVFVTP 153 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp 153 (419)
+.+ .+.++|+||.+.-
T Consensus 61 ~~~-~i~~~d~vV~S~A 76 (96)
T d1p3da1 61 AEE-HIEGASVVVVSSA 76 (96)
T ss_dssp CGG-GGTTCSEEEECTT
T ss_pred ccc-cCCCCCEEEECCC
Confidence 333 3678898877654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.98 E-value=0.00053 Score=58.40 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=66.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCC---CCc----------
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLP---GIK---------- 127 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~---~~~---------- 127 (419)
.-||.|||+|..|..-++.....| -.|+++|.+++. .+.+++.+....... ...
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lG-------A~V~v~D~~~~~------~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~ 95 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLG-------AVVMATDVRAAT------KEQVESLGGKFITVDDEAMKTAETAGGYAKE 95 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCSTT------HHHHHHTTCEECCC-----------------
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcC-------CEEEEEeccHHH------HHHHHHhhcceEEEeccccccccccccchhh
Confidence 358999999999999988888889 899999999887 677776543211100 000
Q ss_pred cCCCeE--ecCCHHHHhcCCCEEEEccCcc--hHHH-HHHHHhccCCCCcEEEEee
Q 014757 128 LGKNVV--ADPDLENAVKDANMLVFVTPHQ--FMEG-ICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 128 l~~~i~--~~~~~~ea~~~aDlVilavp~~--~~~~-vl~~l~~~l~~~tiivs~~ 178 (419)
+..... ....+.+.+.++|+||.++--. .-.- +-++....+++|.+||++.
T Consensus 96 ~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 96 MGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp ------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred cCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 000000 0011234577899999887532 1111 1244556678999999985
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=96.94 E-value=0.00087 Score=59.06 Aligned_cols=86 Identities=8% Similarity=0.162 Sum_probs=54.9
Q ss_pred CcCeEEEECcchHHH-HHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhc-CcCCccCCCCccCCCeEecC
Q 014757 60 HKSKVTVVGSGNWGS-VASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRT-NENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~-~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~-g~~~~~~~~~~l~~~i~~~~ 136 (419)
.+-||||||+|.||. .+...+..... .+|. ++++++++ .+...+. +... ..+...+
T Consensus 32 ~~iriaiIG~G~~~~~~~~~~~~~~~~------~~ivav~d~~~~~------a~~~~~~~~i~~---------~~~~~~~ 90 (221)
T d1h6da1 32 RRFGYAIVGLGKYALNQILPGFAGCQH------SRIEALVSGNAEK------AKIVAAEYGVDP---------RKIYDYS 90 (221)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSS------EEEEEEECSCHHH------HHHHHHHTTCCG---------GGEECSS
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHhCCC------ceEEEEecCCHHH------HHHHHHhhcccc---------ccccccC
Confidence 345899999999997 45555555421 5655 78887655 3444332 2211 1244567
Q ss_pred CHHHHhc--CCCEEEEccCcchHHHHHHHHhc
Q 014757 137 DLENAVK--DANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 137 ~~~ea~~--~aDlVilavp~~~~~~vl~~l~~ 166 (419)
|.++.+. +.|+|++|+|.....++......
T Consensus 91 d~~ell~~~~iD~V~I~tp~~~H~~~~~~al~ 122 (221)
T d1h6da1 91 NFDKIAKDPKIDAVYIILPNSLHAEFAIRAFK 122 (221)
T ss_dssp SGGGGGGCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred chhhhcccccceeeeeccchhhhhhHHHHhhh
Confidence 7777665 58999999999776666655443
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.89 E-value=0.0029 Score=49.30 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=52.4
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
.-+||.|||.|.+|..-++.|.+.| .+|++++...+. ++ ..+.+.+. .. . +.-.-+.+
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~g-------a~v~v~~~~~~~----~~-~~~~~~~~-i~------~---~~~~~~~~ 68 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAG-------ARLTVNALTFIP----QF-TVWANEGM-LT------L---VEGPFDET 68 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT-------BEEEEEESSCCH----HH-HHHHTTTS-CE------E---EESSCCGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CeEEEEeccCCh----HH-HHHHhcCC-ce------e---eccCCCHH
Confidence 3468999999999999999999999 899999976542 11 22222111 00 0 01111223
Q ss_pred HHhcCCCEEEEccCcchHHHHH
Q 014757 140 NAVKDANMLVFVTPHQFMEGIC 161 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl 161 (419)
.+.++++|+.++.+..+..-+
T Consensus 69 -dl~~~~lv~~at~d~~~n~~i 89 (113)
T d1pjqa1 69 -LLDSCWLAIAATDDDTVNQRV 89 (113)
T ss_dssp -GGTTCSEEEECCSCHHHHHHH
T ss_pred -HhCCCcEEeecCCCHHHHHHH
Confidence 367899999999887665433
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.88 E-value=0.00085 Score=53.35 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=32.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++|.|||+|.+|.-+|..|++.| .+|+++.+.++.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g-------~~Vtli~~~~~~ 65 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAG-------VHVSLVETQPRL 65 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESSSST
T ss_pred CeEEEECcchhHHHHHHHhhccc-------ceEEEEeecccc
Confidence 68999999999999999999999 899999998764
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.83 E-value=0.00068 Score=59.64 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=32.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..+||.|||+|.+|.+.|..|+++| ++|++++|+.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G-------~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKG-------YSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCC-------CCEEEEeCCC
Confidence 4468999999999999999999999 9999999875
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=96.82 E-value=0.0018 Score=53.82 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=64.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
+++.|+|.|-.|...|..|...| -.|+++.++| +.+++..- .+ .++ .+.+++
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~G-------a~V~V~E~DP--------i~alqA~m------dG------f~v-~~~~~a 75 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLG-------ARVYITEIDP--------ICAIQAVM------EG------FNV-VTLDEI 75 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHT-------CEEEEECSCH--------HHHHHHHT------TT------CEE-CCHHHH
T ss_pred CEEEEecccccchhHHHHHHhCC-------CEEEEEecCc--------hhhHHHHh------cC------Ccc-CchhHc
Confidence 68999999999999999999999 8999999887 45555521 11 223 567788
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
++.+|++|.+|....+-. .+-.+.++++.|+....
T Consensus 76 ~~~aDi~vTaTGn~~vI~--~~h~~~MKdgaIl~N~G 110 (163)
T d1v8ba1 76 VDKGDFFITCTGNVDVIK--LEHLLKMKNNAVVGNIG 110 (163)
T ss_dssp TTTCSEEEECCSSSSSBC--HHHHTTCCTTCEEEECS
T ss_pred cccCcEEEEcCCCCcccc--HHHHHHhhCCeEEEecc
Confidence 999999999999865211 12235567888887653
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.75 E-value=0.00059 Score=57.48 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=48.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+||.|||+|.++.+++..|.+.|. .+|++++|+.++ .+.+.+.- . .....+..
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~------~~I~I~nR~~~k------a~~L~~~~-~------------~~~~~~~~- 70 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGF------EKLKIYARNVKT------GQYLAALY-G------------YAYINSLE- 70 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTC------CCEEEECSCHHH------HHHHHHHH-T------------CEEESCCT-
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC------CEEEEecccHHH------HHHHHHhh-h------------hhhhhccc-
Confidence 3689999999999999999999993 489999999776 45554321 0 11112221
Q ss_pred HhcCCCEEEEccCc
Q 014757 141 AVKDANMLVFVTPH 154 (419)
Q Consensus 141 a~~~aDlVilavp~ 154 (419)
..++|+||-|||-
T Consensus 71 -~~~~DliINaTpi 83 (167)
T d1npya1 71 -NQQADILVNVTSI 83 (167)
T ss_dssp -TCCCSEEEECSST
T ss_pred -ccchhhheecccc
Confidence 2478999999984
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.69 E-value=0.001 Score=62.02 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=63.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
...+++|||+|..+..-...|...-- . .+|.+|+|+++. .+.+++.++..+ +.+..+++
T Consensus 124 ~~~~l~iiGaG~QA~~~~~al~~~~~-i----~~i~v~~r~~e~--~~~~~~~~~~~~--------------~~~~~~~~ 182 (320)
T d1omoa_ 124 NSSVFGFIGCGTQAYFQLEALRRVFD-I----GEVKAYDVREKA--AKKFVSYCEDRG--------------ISASVQPA 182 (320)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSC-C----CEEEEECSSHHH--HHHHHHHHHHTT--------------CCEEECCH
T ss_pred CccEEEEecCcccHHHHHHHHHHHhh-h----hhcccccCCHHH--HHHHHHHHHhcC--------------Cccccchh
Confidence 34679999999999999988876431 1 689999999765 344445554432 12334456
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+++.+||+|+.||++..= +++ ..++++|+.|..+.
T Consensus 183 ~a~~~aDiV~taT~s~~P--~~~--~~~l~~G~hv~~iG 217 (320)
T d1omoa_ 183 EEASRCDVLVTTTPSRKP--VVK--AEWVEEGTHINAIG 217 (320)
T ss_dssp HHHTSSSEEEECCCCSSC--CBC--GGGCCTTCEEEECS
T ss_pred hhhccccEEEEeccCccc--ccc--hhhcCCCCeEeecC
Confidence 678999999999997320 111 24577888776653
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.59 E-value=0.003 Score=51.41 Aligned_cols=87 Identities=8% Similarity=0.049 Sum_probs=65.7
Q ss_pred cCeEEEECc----chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGS----GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
.++|+|||+ |.+|..+...|.+.| ++|+.++..... +. +.++..
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g-------~~v~pVnP~~~~---------i~----------------G~~~~~ 66 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHG-------YDVYPVNPKYEE---------VL----------------GRKCYP 66 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT-------CEEEEECTTCSE---------ET----------------TEECBS
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCC-------CEEEEECCcccc---------cC----------------CCcccc
Confidence 357999996 689999999999999 888888754321 11 245667
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++++.-...|++++++|+..+.++++++... +.-.+.++.|..
T Consensus 67 sl~dlp~~iD~v~i~vp~~~~~~~~~e~~~~---g~k~v~~~~G~~ 109 (139)
T d2d59a1 67 SVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK---GAKVVWFQYNTY 109 (139)
T ss_dssp SGGGCSSCCSEEEECSCHHHHHHHHHHHHHH---TCSEEEECTTCC
T ss_pred cccccCccceEEEEEeCHHHHHHHHHHHHHh---CCCEEEEecccc
Confidence 7777555789999999999999999887653 333566677654
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.58 E-value=0.00068 Score=57.16 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=57.5
Q ss_pred CCCCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEec
Q 014757 56 DGVLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVAD 135 (419)
Q Consensus 56 ~~~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~ 135 (419)
+.+..++||+|||+|.||...+..|.+.... ..+.+++..... ..... .... .
T Consensus 2 ~~~~~k~kv~iIG~G~~g~~h~~~l~~~~~~-----~~~~~~~~~~~~--------~~~~~-------------~~~~-~ 54 (172)
T d1lc0a1 2 ITNSGKFGVVVVGVGRAGSVRLRDLKDPRSA-----AFLNLIGFVSRR--------ELGSL-------------DEVR-Q 54 (172)
T ss_dssp CCCCCSEEEEEECCSHHHHHHHHHHTSHHHH-----TTEEEEEEECSS--------CCCEE-------------TTEE-B
T ss_pred CCCCCCcEEEEEcCCHHHHHHHHHHHhCCCC-----cEEEEEeccchH--------HHHHh-------------hccC-c
Confidence 4567789999999999999998888654310 234555543221 00000 0122 2
Q ss_pred CCHHHHhc--CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 136 PDLENAVK--DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 136 ~~~~ea~~--~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
.+.++.+. +.|+|++|+|+....++.....+. +.- |.+-|.+.
T Consensus 55 ~~~~e~l~~~~iD~V~I~tp~~~H~~~~~~al~~---gk~-V~~EKP~a 99 (172)
T d1lc0a1 55 ISLEDALRSQEIDVAYICSESSSHEDYIRQFLQA---GKH-VLVEYPMT 99 (172)
T ss_dssp CCHHHHHHCSSEEEEEECSCGGGHHHHHHHHHHT---TCE-EEEESCSC
T ss_pred CCHHHHHhCCCcchhhhccccccccccccccccc---chh-hhcCCCcc
Confidence 35666654 579999999997777766555442 332 34455444
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.005 Score=51.38 Aligned_cols=91 Identities=11% Similarity=0.025 Sum_probs=56.8
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH-
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA- 141 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea- 141 (419)
+|.|+|+|.+|...+..+...|. .+|.++++++++ .+..++.|....... ...++.+.
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~G~------~~Vi~~d~~~~r------l~~a~~~Ga~~~~~~---------~~~~~~~~~ 87 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAMGA------AQVVVTDLSATR------LSKAKEIGADLVLQI---------SKESPQEIA 87 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC------SEEEEEESCHHH------HHHHHHTTCSEEEEC---------SSCCHHHHH
T ss_pred EEEEECCCccHHHHHHHHHHcCC------ceEEeccCCHHH------HHHHHHhCCcccccc---------ccccccccc
Confidence 79999999999999999988882 379999988765 455555453211000 01222221
Q ss_pred -------hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 142 -------VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 142 -------~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
-..+|+||-|+..... ++.....++++..++.+
T Consensus 88 ~~~~~~~g~g~Dvvid~~G~~~~---~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 88 RKVEGQLGCKPEVTIECTGAEAS---IQAGIYATRSGGTLVLV 127 (171)
T ss_dssp HHHHHHHTSCCSEEEECSCCHHH---HHHHHHHSCTTCEEEEC
T ss_pred ccccccCCCCceEEEeccCCchh---HHHHHHHhcCCCEEEEE
Confidence 1368999999997543 23333444555555444
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.44 E-value=0.0019 Score=52.36 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=65.4
Q ss_pred cCeEEEECc----chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 61 KSKVTVVGS----GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGa----G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
.++|+|||+ +.+|..+...|.+.| +++..+..++.. +.+. +.+...
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g-------~~~~~v~~~~~~-------~~i~----------------g~~~~~ 62 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQG-------YRVLPVNPRFQG-------EELF----------------GEEAVA 62 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTT-------CEEEEECGGGTT-------SEET----------------TEECBS
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCC-------CCceEEEecccc-------ceee----------------ceeccc
Confidence 357999997 899999999999999 899999875432 1111 245667
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
++.+.-...|++++++|+..+.+++++.... .... +.++.|..
T Consensus 63 ~l~~i~~~iD~v~v~~p~~~v~~~v~~~~~~-g~k~--i~~q~G~~ 105 (136)
T d1iuka_ 63 SLLDLKEPVDILDVFRPPSALMDHLPEVLAL-RPGL--VWLQSGIR 105 (136)
T ss_dssp SGGGCCSCCSEEEECSCHHHHTTTHHHHHHH-CCSC--EEECTTCC
T ss_pred chhhccCCCceEEEeccHHHHHHHHHHHHhh-CCCe--EEEecCcc
Confidence 7776545689999999999999998887653 2233 34566764
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.39 E-value=0.0012 Score=58.76 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=31.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|||+|||+|.-|...|..|+++| ++|+++.+++.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G-------~~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRG-------TDAVLLESSAR 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTT-------CCEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-------CCEEEEecCCC
Confidence 79999999999999999999999 99999998754
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.30 E-value=0.002 Score=57.03 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=33.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+||+|||+|.-|.++|..|+++| ++|++++++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G-------~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAG-------VDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCC-------CCEEEEeCCCC
Confidence 4579999999999999999999999 99999998754
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=96.25 E-value=0.0035 Score=55.47 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=52.3
Q ss_pred CCCCCCcCeEEEECcchHHHHHHH----HHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHh-cCcCCccCCCCcc
Q 014757 55 DDGVLHKSKVTVVGSGNWGSVASK----LIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINR-TNENVKYLPGIKL 128 (419)
Q Consensus 55 ~~~~~~~mkI~IIGaG~mG~~lA~----~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~-~g~~~~~~~~~~l 128 (419)
+++....+||||||+|.+|+.++. .+.+... +.+|. +++++++. .+...+ .+..
T Consensus 10 ~~~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~-----~~~ivav~d~~~~~------~~~~~~~~~~~--------- 69 (237)
T d2nvwa1 10 TVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSS-----QFQIVALYNPTLKS------SLQTIEQLQLK--------- 69 (237)
T ss_dssp SSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTT-----TEEEEEEECSCHHH------HHHHHHHTTCT---------
T ss_pred cCCCCCCeEEEEEecCccccHHHHHHHHHHHhcCC-----CeEEEEEEcCCHHH------HHHHHHhcccc---------
Confidence 344566789999999986554443 3444320 15655 67776544 333332 2211
Q ss_pred CCCeEecCCHHHHhc--CCCEEEEccCcchHHHHHHHH
Q 014757 129 GKNVVADPDLENAVK--DANMLVFVTPHQFMEGICKRL 164 (419)
Q Consensus 129 ~~~i~~~~~~~ea~~--~aDlVilavp~~~~~~vl~~l 164 (419)
.....++.++.+. +.|+|++|+|.....+.....
T Consensus 70 --~~~~~~~~~~l~~~~~iD~V~i~tp~~~h~~~~~~a 105 (237)
T d2nvwa1 70 --HATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNI 105 (237)
T ss_dssp --TCEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHHH
T ss_pred --cceeecchhhcccccccceeeccCCCcchhhHHHHH
Confidence 2345678887664 579999999986655555443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0042 Score=50.91 Aligned_cols=34 Identities=9% Similarity=-0.060 Sum_probs=31.1
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.|-|+|.|.+|..++..|.+.| ++|++++.+++.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~-------~~v~vId~d~~~ 38 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRG-------QNVTVISNLPED 38 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT-------CCEEEEECCCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-------CCEEEEeccchh
Confidence 5999999999999999999999 899999988753
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0021 Score=54.63 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=61.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCC-cchHHHHHHhcCcCCccCCCCccCCCeEecCC---
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPS-GEKLTDVINRTNENVKYLPGIKLGKNVVADPD--- 137 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~-~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~--- 137 (419)
++|.|||+|.+|.+++..|.+.|. ..+++++|+++..+ .+.+++.++...... ..+.-..+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~------~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~ 83 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGL------KEIKLFNRRDEFFDKALAFAQRVNENTDCV---------VTVTDLADQQA 83 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------SEEEEEECSSTTHHHHHHHHHHHHHHSSCE---------EEEEETTCHHH
T ss_pred CEEEEECCcHHHHHHHHHHhhcCC------ceEeeeccchHHHHHHHHHHHHHHhhcCcc---------eEeeecccccc
Confidence 689999999999999999999984 68999999987611 112222333221000 00111122
Q ss_pred HHHHhcCCCEEEEccCcchH----HHHHHHHhccCCCCcEEEEee
Q 014757 138 LENAVKDANMLVFVTPHQFM----EGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~----~~vl~~l~~~l~~~tiivs~~ 178 (419)
..+...++|+||-|+|.... +..... ...++++.+++++.
T Consensus 84 ~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~-~~~~~~~~~v~Di~ 127 (182)
T d1vi2a1 84 FAEALASADILTNGTKVGMKPLENESLVND-ISLLHPGLLVTECV 127 (182)
T ss_dssp HHHHHHTCSEEEECSSTTSTTSCSCCSCCC-GGGSCTTCEEEECC
T ss_pred hhhhhcccceeccccCCccccccchhhhhH-HHhhhcchhhHHhh
Confidence 23446789999999996321 111111 23456778888875
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.20 E-value=0.0073 Score=51.11 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=51.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEe-cCCCCCCcchHHHHHHhcCcCCc-cCCCC-cc-CCCeEecC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWV-FEETLPSGEKLTDVINRTNENVK-YLPGI-KL-GKNVVADP 136 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~-r~~~~~~~~~l~~~i~~~g~~~~-~~~~~-~l-~~~i~~~~ 136 (419)
|-||+|.|.|.+|..+.+.+.++.. .+|..++ +.+.. . ...+...+.... ...+. .+ ..++....
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~d------ievVaInd~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g 69 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPD------MKLVGVAKTSPNY----E-AFIAHRRGIRIYVPQQSIKKFEESGIPVAG 69 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTT------EEEEEEECSSCSH----H-HHHHHHTTCCEECCGGGHHHHHTTTCCCCC
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCC------CEEEEEECCCCcH----H-HHHhcccCcceeccCccceeccccceecCC
Confidence 5699999999999999999998751 5655554 33221 1 122222221100 00000 00 11233345
Q ss_pred CHHHHhcCCCEEEEccCcchHHHHH
Q 014757 137 DLENAVKDANMLVFVTPHQFMEGIC 161 (419)
Q Consensus 137 ~~~ea~~~aDlVilavp~~~~~~vl 161 (419)
+..+...++|+||-|++.....+-+
T Consensus 70 ~~~~~~~~vDiViecTG~f~~~e~a 94 (178)
T d1b7go1 70 TVEDLIKTSDIVVDTTPNGVGAQYK 94 (178)
T ss_dssp CHHHHHHHCSEEEECCSTTHHHHHH
T ss_pred chhhhhhcCCEEEECCCCcCCHHHH
Confidence 5666667899999999986544433
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0032 Score=53.48 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=34.5
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
....+||+|||+|.-|...|..|+++| |+|++++++++.
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G-------~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARG-------HQVTLFDAHSEI 78 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTT-------CEEEEEESSSSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhc-------cceEEEeccCcc
Confidence 344579999999999999999999999 999999997643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.11 E-value=0.0049 Score=51.28 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=57.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH-
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN- 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e- 140 (419)
.+|.|+|+|.+|...++.+...| .+|.++++++++ .+..++.|....+... ....+..+
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~G-------a~vi~v~~~~~r------~~~a~~~ga~~~~~~~-------~~~~~~~~~ 87 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYG-------AFVVCTARSPRR------LEVAKNCGADVTLVVD-------PAKEEESSI 87 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCHHH------HHHHHHTTCSEEEECC-------TTTSCHHHH
T ss_pred CEEEEEcccccchhhHhhHhhhc-------ccccccchHHHH------HHHHHHcCCcEEEecc-------ccccccchh
Confidence 37999999999999999888888 799999998765 4555554432110000 00011111
Q ss_pred --Hh-----cCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEEe
Q 014757 141 --AV-----KDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 141 --a~-----~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs~ 177 (419)
.+ ..+|+||-|+.... ++..+ ..++++..++..
T Consensus 88 ~~~~~~~~g~g~D~vid~~g~~~~~~~a~----~~~~~~G~iv~~ 128 (170)
T d1e3ja2 88 IERIRSAIGDLPNVTIDCSGNEKCITIGI----NITRTGGTLMLV 128 (170)
T ss_dssp HHHHHHHSSSCCSEEEECSCCHHHHHHHH----HHSCTTCEEEEC
T ss_pred hhhhhcccccCCceeeecCCChHHHHHHH----HHHhcCCceEEE
Confidence 11 35899999998754 44444 334555555544
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.05 E-value=0.0047 Score=48.27 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=32.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+|.|||+|.+|.-+|..|++.| .+|+++.|.++.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G-------~~Vtlve~~~~i 57 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFG-------TKVTILEGAGEI 57 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESSSSS
T ss_pred CeEEEECCCccceeeeeeecccc-------cEEEEEEeccee
Confidence 68999999999999999999999 899999998764
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.00 E-value=0.042 Score=44.00 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=64.9
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEE-EEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVR-MWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~-l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||+|+| .|.||..++..+.+... +++. .+++.... .. .
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~------~~l~~~~d~~~~~-------~~-------------------------~-- 40 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADD------LTLSAELDAGDPL-------SL-------------------------L-- 40 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTT------SEEEEEECTTCCT-------HH-------------------------H--
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC------CEEEEEEecCCch-------hh-------------------------h--
Confidence 799999 59999999998877641 4433 33332211 11 1
Q ss_pred HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcccCCCCcccHHHHHHhHh--CCceEEEeCcchH
Q 014757 141 AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGMEVKREGPCMISTLISEQL--GVSCCVLMGANIA 212 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~~~~~~~~~~~~~i~~~~--g~~~~v~~gp~~a 212 (419)
...++|+||=.+.+..+.+.++.... .+..+|.-|+|+..+ . .+.+++.. ....+++..|++.
T Consensus 41 ~~~~~DvvIDFS~p~~~~~~~~~~~~---~~~~~ViGTTG~~~~-----~-~~~l~~~~~~~~~ipil~apNfS 105 (135)
T d1yl7a1 41 TDGNTEVVIDFTHPDVVMGNLEFLID---NGIHAVVGTTGFTAE-----R-FQQVESWLVAKPNTSVLIAPNFT 105 (135)
T ss_dssp HTTTCSEEEECCCTTTHHHHHHHHHH---TTCEEEECCCCCCHH-----H-HHHHHHHHHSCTTCEEEECSCCG
T ss_pred ccccCCEEEEcccHHHHHHHHHHHHh---cCCCEEEeccccchh-----H-HHHHHHHHHhcCCCCEEEcCCcc
Confidence 12468999999999888888776654 367788888898742 1 13344421 2345777777763
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.96 E-value=0.0038 Score=56.42 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=33.6
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..+.+||+|||+|.-|.+.|..|+++| ++|+++++++.
T Consensus 27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G-------~~V~vlE~~~~ 64 (370)
T d2iida1 27 TSNPKHVVIVGAGMAGLSAAYVLAGAG-------HQVTVLEASER 64 (370)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHT-------CEEEEECSSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCC-------CCEEEEeCCCC
Confidence 345579999999999999999999999 99999997654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.94 E-value=0.0033 Score=53.03 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=32.7
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCc-eEEEEecCCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHD-EVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~-~V~l~~r~~~~ 103 (419)
..+||+|||+|..|...|..|++.| + +|+++++.+..
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G-------~~~V~v~E~~~~~ 40 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLG-------YSDITIFEKQEYV 40 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTT-------CCCEEEEESSSSC
T ss_pred CCCEEEEECChHHHHHHHHHHHHCC-------CCeEEEEEecCcc
Confidence 3579999999999999999999999 6 69999987653
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.0044 Score=48.99 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=32.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.|+.|||+|.+|.=+|..|++.| .+|+++.+.+..
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG-------~~Vtii~~~~~~ 58 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLG-------SKVTVVEFQPQI 58 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhC-------cceeEEEecccc
Confidence 68999999999999999999999 999999998754
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.91 E-value=0.0077 Score=51.09 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=57.0
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
++++||+||| +|..|.-+.+.|.++-. .++..+.-+... ++.+.+..... . ....+ .....
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~------~ei~~l~S~~~a--G~~~~~~~~~~----~---~~~~~---~~~~~ 64 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQ------FRIKVMTADRKA--GEQFGSVFPHL----I---TQDLP---NLVAV 64 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSS------EEEEEEECSTTT--TSCHHHHCGGG----T---TSCCC---CCBCG
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCC------ceEEEEeccccC--CCccccccccc----c---ccccc---cchhh
Confidence 3567999999 59999999999988752 566655433222 33322211110 0 00110 01111
Q ss_pred HHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 138 LENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
.++...++|++|+|+|...-.++... +.+...++....+
T Consensus 65 ~~~~~~~~Dvvf~alp~~~s~~~~~~----l~~~~~~v~~~~~ 103 (183)
T d2cvoa1 65 KDADFSNVDAVFCCLPHGTTQEIIKG----LPQELKIVDLSAD 103 (183)
T ss_dssp GGCCGGGCSEEEECCSSSHHHHHHHT----SCSSCEEEECSST
T ss_pred hhhhhcccceeeeccccchHHHHHHH----HHhcCcccccchh
Confidence 22235689999999999877666543 3344455555543
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.87 E-value=0.0038 Score=57.84 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=33.4
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
++.|+||+|||+|.-|.+.|..|++.|. .++|+++.++..
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~-----~~~v~vfEk~~~ 40 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKA-----FDQVTLFERRGS 40 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTC-----CSEEEEECSSSS
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCC-----CCCEEEEECCCC
Confidence 4567899999999999999999988762 159999998754
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.73 E-value=0.0022 Score=54.24 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=58.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-++|.|||+|.++.+++..|.+.| +|++++|+.++ .+.+++.+...... .+ ...+. ..+.+.
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~~--------~i~I~nR~~~k--a~~l~~~~~~~~~~-~~------~~~~~-~~~~~~ 79 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKDN--------NIIIANRTVEK--AEALAKEIAEKLNK-KF------GEEVK-FSGLDV 79 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS--------EEEEECSSHHH--HHHHHHHHHHHHTC-CH------HHHEE-EECTTC
T ss_pred CCEEEEECCcHHHHHHHHHHcccc--------ceeeehhhhhH--HHHHHHHHHHhhch-hh------hhhhh-hhhhhh
Confidence 368999999999999999986554 89999999766 33444444332100 00 00111 123333
Q ss_pred HhcCCCEEEEccCcchHHHHHHH--H-hccCCCCcEEEEee
Q 014757 141 AVKDANMLVFVTPHQFMEGICKR--L-VGKVNGDVEAISLI 178 (419)
Q Consensus 141 a~~~aDlVilavp~~~~~~vl~~--l-~~~l~~~tiivs~~ 178 (419)
...++|+||-|+|.......-.. + ...+.++.+++++.
T Consensus 80 ~~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~ 120 (177)
T d1nvta1 80 DLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLI 120 (177)
T ss_dssp CCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECC
T ss_pred ccchhhhhccCCcccccccccccchhhhhccCcccceeeec
Confidence 45679999999996322110000 0 12344566777764
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.73 E-value=0.00098 Score=58.22 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
|||+|||+|.+|.+.|..|+++|..+..+ .+++++++.
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~-e~~~i~~~~ 38 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQP-LDVKVYADR 38 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSS-CEEEEEESC
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEE-eeeeecccC
Confidence 89999999999999999999999322111 245666654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.72 E-value=0.0048 Score=56.97 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=33.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++||+|||+|.-|...|..|+++| ++|+++..+.+.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G-------~~V~viEk~~~i 37 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKG-------HQVHIIDQRDHI 37 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT-------CEEEEEESSSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCC-------CCEEEEECCCCC
Confidence 579999999999999999999999 999999987654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.0077 Score=46.99 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=33.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..||.|||+|.+|.-+|..|++.| .+|+++.|.+..
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G-------~~Vtlve~~~~~ 56 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLG-------AKTHLFEMFDAP 56 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSSSS
T ss_pred CCEEEEECCChhhHHHHHHhhccc-------cEEEEEeecchh
Confidence 368999999999999999999999 899999998754
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.59 E-value=0.0093 Score=46.76 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=32.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..+|+|||+|.+|.=+|..|++.| .+|+++.+....
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G-------~~Vtiv~~~~~l 57 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLG-------AEVTVLEAMDKF 57 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESSSSS
T ss_pred CCeEEEECCChHHHHHHHHHHHcC-------CceEEEEeeccc
Confidence 368999999999999999999999 899999988654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.58 E-value=0.01 Score=51.23 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=32.3
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
..-++|+|-|.|++|..+|..|.+.| ..|++++.+++
T Consensus 25 L~gk~v~IqG~G~VG~~~A~~L~~~G-------akvvv~d~d~~ 61 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGGSLASLAAEAG-------AQLLVADTDTE 61 (201)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEecchHH
Confidence 34468999999999999999999999 89999887654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.54 E-value=0.0055 Score=54.10 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+||+|||+|.-|.+.|..|+++| ++|+++++++.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G-------~~V~vlE~~~~ 35 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHG-------LNVTVFEAEGK 35 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTS-------CEEEEECSSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-------CCEEEEeCCCC
Confidence 68999999999999999999999 99999997654
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.49 E-value=0.0046 Score=52.73 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=49.4
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|.|.| .|.+|..+|..|++.| .+|.+.+|++++ .+.+.+.+..... ... .+..+....+.+
T Consensus 23 gK~vlItGasgGIG~~ia~~la~~G-------~~V~~~~r~~~~--~~~~~~~~~~~~~-~~~-----~~~d~~~~~~~~ 87 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLAGEG-------AEVVLCGRKLDK--AQAAADSVNKRFK-VNV-----TAAETADDASRA 87 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSHHH--HHHHHHHHHHHHT-CCC-----EEEECCSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhc-------cchhhcccchHH--HHHHHHHHHhccc-hhh-----hhhhcccHHHHH
Confidence 36889998 6999999999999999 899999999765 2333344433210 000 000011112344
Q ss_pred HHhcCCCEEEEccC
Q 014757 140 NAVKDANMLVFVTP 153 (419)
Q Consensus 140 ea~~~aDlVilavp 153 (419)
+++.++|+||-+..
T Consensus 88 ~~~~~iDilin~Ag 101 (191)
T d1luaa1 88 EAVKGAHFVFTAGA 101 (191)
T ss_dssp HHTTTCSEEEECCC
T ss_pred HHhcCcCeeeecCc
Confidence 55778888887754
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.47 E-value=0.01 Score=46.75 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=33.1
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
...+|+|||+|.+|.-+|..|++.| .+|+++.+.+..
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g-------~~Vtlie~~~~~ 65 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAG-------KKVTVIDILDRP 65 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESSSST
T ss_pred CCCEEEEECChHHHHHHHHHhhccc-------eEEEEEEecCcc
Confidence 3468999999999999999999999 899999987643
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.44 E-value=0.0056 Score=54.44 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=30.0
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.|.|||+|.+|.+.|..|+++| .+|+++++++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G-------~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKEN-------KNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC-------CcEEEEeCCC
Confidence 3999999999999999999999 8999999865
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.43 E-value=0.0078 Score=47.50 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=30.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+++|||+|.+|.=+|..|++.| .+|+++.|++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG-------~~Vtii~~~~ 53 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIG-------LDVTVMVRSI 53 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSS
T ss_pred CeEEEECCCccHHHHHHHHhhcC-------CeEEEEEech
Confidence 58999999999999999999999 8999998864
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.43 E-value=0.011 Score=48.52 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=56.1
Q ss_pred eEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 63 KVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 63 kI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
||+|||+ |..|.-+.+.|.++... ..++.+...+... |....+.. .........++.
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp----~~~l~~~~s~~s~-------------G~~~~~~~-----~~~~~~~~~~~~ 60 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLP----IDKIRYLASARSA-------------GKSLKFKD-----QDITIEETTETA 60 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSC----EEEEEEEECGGGT-------------TCEEEETT-----EEEEEEECCTTT
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCC----ceEEEEecccccc-------------cccccccC-----Ccccccccchhh
Confidence 7999996 99999999999877410 0344544432211 11110000 011111222233
Q ss_pred hcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCcc
Q 014757 142 VKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGME 182 (419)
Q Consensus 142 ~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi~ 182 (419)
..+.|++++++|.........+... .+..||+++.-.-
T Consensus 61 ~~~~d~~f~~~~~~~s~~~~~~~~~---~~~~VIDlSsdfR 98 (154)
T d2gz1a1 61 FEGVDIALFSAGSSTSAKYAPYAVK---AGVVVVDNTSYFR 98 (154)
T ss_dssp TTTCSEEEECSCHHHHHHHHHHHHH---TTCEEEECSSTTT
T ss_pred hhhhhhhhhccCccchhhHHhhhcc---ccceehhcChhhh
Confidence 5689999999998766665554443 5889999886443
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0097 Score=47.06 Aligned_cols=36 Identities=8% Similarity=0.260 Sum_probs=33.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.++|+|||+|.+|.=+|..|++.| .+|+++.|.+..
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G-------~~Vtlv~~~~~~ 57 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALG-------SKTSLMIRHDKV 57 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSSSS
T ss_pred CCEEEEEcCCccHHHHHHHHhcCC-------cEEEEEeecccc
Confidence 368999999999999999999999 899999998654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.23 E-value=0.014 Score=52.37 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=33.4
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.++||.|+| +|.+|..++..|.++| |+|++..|++..
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G-------~~V~~~~R~~~~ 39 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLG-------HPTYVLFRPEVV 39 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-------CCEEEECCSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-------CEEEEEECCCcc
Confidence 568999999 5999999999999999 999999998654
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.17 E-value=0.007 Score=54.32 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=30.5
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
+|.|||+|..|.++|..|+++| ++|+++++.+
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G-------~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAG-------IDNVILERQT 35 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT-------CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCC-------CCEEEEeCCC
Confidence 7999999999999999999999 8999999875
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.17 E-value=0.01 Score=52.25 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=32.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.++|.|||+|.-|.++|..|+++|. ++|+++.+.++.
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi------~~V~V~Er~~~~ 37 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGI------GKVTLLESSSEI 37 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC------SEEEEEESSSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC------CeEEEEeCCCCC
Confidence 3799999999999999999999993 489999997653
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.16 E-value=0.014 Score=45.33 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=32.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.++.|||+|..|.-+|..|++.| ++|+++.+.+..
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g-------~~Vtlve~~~~i 56 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLG-------AQVSVVEARERI 56 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHT-------CEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcc-------cceEEEeeeccc
Confidence 58999999999999999999999 899999998654
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.12 E-value=0.011 Score=46.44 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=32.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+|.|||+|.+|.-+|..|++.| .+|+++.|.+..
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g-------~~Vtlv~~~~~l 67 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAG-------YHVKLIHRGAMF 67 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTT-------CEEEEECSSSCC
T ss_pred CcEEEECCcHHHHHHHHHhhccc-------ceEEEEeccccc
Confidence 58999999999999999999999 899999998754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.06 E-value=0.013 Score=49.28 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=35.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTN 117 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g 117 (419)
.+|.|+|+|.+|...+..+...|. ..|+++++++++ .+..++.|
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga------~~Vi~~~~~~~~------~~~a~~lG 73 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGA------ENVIVIAGSPNR------LKLAEEIG 73 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTB------SEEEEEESCHHH------HHHHHHTT
T ss_pred CEEEEECCCccchhheeccccccc------cccccccccccc------cccccccc
Confidence 479999999999998888888882 379999998765 45555555
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.04 E-value=0.026 Score=46.64 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=36.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCc
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNE 118 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~ 118 (419)
.+|.|+|+|.+|...+..+...| .+|+++++++++ .+..++.|.
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G-------~~vi~~~~~~~k------~~~a~~lGa 72 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMG-------AETYVISRSSRK------REDAMKMGA 72 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-------CEEEEEESSSTT------HHHHHHHTC
T ss_pred CEEEEECCCCcchhHHHHhhhcc-------ccccccccchhH------HHHhhccCC
Confidence 47999999999999888877788 899999999887 566666553
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.00 E-value=0.01 Score=50.88 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.||+|||+|.-|.+.|..|+++|. ++|+++.+++.
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~------~~V~vlE~~~~ 35 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGI------TDLLILEATDH 35 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTC------CCEEEECSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCC------CcEEEEECCCC
Confidence 379999999999999999999992 37999998654
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.00 E-value=0.0074 Score=52.32 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=33.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..||+|||+|.-|.+.|..|+++|+......++|+++++.+..
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~ 44 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP 44 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence 3699999999999999999999983222222479999987643
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.00 E-value=0.0087 Score=51.29 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=28.1
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEec
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVF 99 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r 99 (419)
.|++|.|.| +|.+|..++..|.++| ++|.+++.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g-------~~v~v~~~ 35 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGS-------DKFVAKGL 35 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTT-------TTCEEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-------CcEEEEEE
Confidence 478999999 6999999999999999 77666553
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.024 Score=43.83 Aligned_cols=39 Identities=18% Similarity=0.042 Sum_probs=34.1
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..+..||+|||.|..|..++....+-| ++|.+++.+++.
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG-------~~v~v~d~~~~~ 46 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLG-------VEVIAVDRYADA 46 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTT-------CEEEEEESSTTC
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHCC-------CEEEEEcCCCCC
Confidence 344569999999999999999999999 999999988754
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.87 E-value=0.015 Score=46.42 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=32.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..+|.|||+|.+|.-+|..|++.| .+|+++.+.+..
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g-------~~Vtvie~~~~~ 70 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKAN-------MHVTLLDTAARV 70 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSSST
T ss_pred CCEEEEECCchHHHHHHHHHHhhC-------cceeeeeecccc
Confidence 368999999999999999999999 899999998754
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.86 E-value=0.039 Score=43.40 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=55.8
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH---
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE--- 139 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~--- 139 (419)
.|-|+|.|.+|..++..| .+ ++|.+++.+++. .+.+...|....+ ++ .++++
T Consensus 2 HivI~G~g~~g~~l~~~L--~~-------~~i~vi~~d~~~------~~~~~~~~~~~i~-Gd---------~~~~~~L~ 56 (129)
T d2fy8a1 2 HVVICGWSESTLECLREL--RG-------SEVFVLAEDENV------RKKVLRSGANFVH-GD---------PTRVSDLE 56 (129)
T ss_dssp CEEEESCCHHHHHHHHTS--CG-------GGEEEEESCTTH------HHHHHHTTCEEEE-SC---------TTSHHHHH
T ss_pred EEEEECCCHHHHHHHHHH--cC-------CCCEEEEcchHH------HHHHHhcCccccc-cc---------cCCHHHHH
Confidence 488999999999999998 35 678889988776 5666665432110 00 12221
Q ss_pred H-HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 140 N-AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 140 e-a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+ -+.+|+.+|+++++....-.+-.....+.++..++...
T Consensus 57 ~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 57 KANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp HTTCTTCSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred HhhhhcCcEEEEeccchhhhHHHHHHHHHHCCCceEEEEE
Confidence 1 15689999999997544333333333344453344433
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.0095 Score=54.34 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=32.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|.+|.|||+|.-|.+.|..|++.| ++|+++.++.+.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g-------~~V~iiEk~~~i 36 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLN-------KKVLVIEKRNHI 36 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGT-------CCEEEECSSSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCC-------CcEEEEECCCCc
Confidence 568999999999999999999999 899999987653
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.76 E-value=0.013 Score=50.71 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=30.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.||+|||+|.-|...|..|++++. .++|+++++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~-----~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHS-----RAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS-----SCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCC-----CCeEEEEeCCCC
Confidence 489999999999999999988731 189999998764
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.74 E-value=0.015 Score=49.37 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=32.6
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+..--|.|||+|.-|...|..|+++| ++|.++.+++.
T Consensus 3 ~~~yDviViGaG~~Gl~~A~~La~~G-------~~V~vlE~~~~ 39 (297)
T d2bcgg1 3 DTDYDVIVLGTGITECILSGLLSVDG-------KKVLHIDKQDH 39 (297)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSS
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCC-------CCEEEEcCCCC
Confidence 34446999999999999999999999 89999998764
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.71 E-value=0.017 Score=45.44 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=33.2
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..++.|||+|.+|.=+|..|++.| .+|+++.|++..
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G-------~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIG-------SEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHT-------CEEEEECSSSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcC-------CeEEEEEEcccc
Confidence 368999999999999999999999 899999998765
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.021 Score=54.84 Aligned_cols=91 Identities=13% Similarity=0.185 Sum_probs=57.3
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC--------C-C--------cchHHHHHHhcCcCCccC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL--------P-S--------GEKLTDVINRTNENVKYL 123 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~--------~-~--------~~~l~~~i~~~g~~~~~~ 123 (419)
.+||.|||+|.+|+.++..|+..|. .+++++|.+.=. . + .+.+.+.+++. .
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gv------g~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~------n 104 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGF------RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDR------V 104 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTC------CCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH------S
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCC------CeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhh------C
Confidence 3689999999999999999999994 589999986411 0 0 01122222221 1
Q ss_pred CCCcc---CCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHh
Q 014757 124 PGIKL---GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 124 ~~~~l---~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~ 165 (419)
|+..+ ...+ .+...+.+.++|+||.|+-+...+..+.+..
T Consensus 105 p~v~i~~~~~~i--~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c 147 (426)
T d1yovb1 105 PNCNVVPHFNKI--QDFNDTFYRQFHIIVCGLDSIIARRWINGML 147 (426)
T ss_dssp TTCCCEEECSCG--GGBCHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred CCCceEeeeccc--cchHHHHHHhcchheeccCcHHHHHHHHHHH
Confidence 22211 1111 1222345789999999999877777766543
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.64 E-value=0.038 Score=46.17 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=50.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEE-EecCCCCCCcchHHHHHHhcCcCCccC-CCC-c-c-CCCeEec
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRM-WVFEETLPSGEKLTDVINRTNENVKYL-PGI-K-L-GKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l-~~r~~~~~~~~~l~~~i~~~g~~~~~~-~~~-~-l-~~~i~~~ 135 (419)
++||+|.|.|.||..+.+.+.++.. .+|.. -+..+.. . ...+.+.+...... .+. . + ..++...
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~~~d------ieiVaINd~~~~~----~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTKQDD------MELIGITKTKPDF----E-AYRAKELGIPVYAASEEFIPRFEKEGFEVA 70 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTT------EEEEEEEESSCSH----H-HHHHHHTTCCEEESSGGGHHHHHHHTCCCS
T ss_pred cEEEEEECCCHHHHHHHHHHHhCCC------ceEEEEecCCChH----H-HHHhhhcCceeecccccceeeecccCcccc
Confidence 3699999999999999999987641 45443 3443321 1 22223222111000 000 0 0 0112233
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHH
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGIC 161 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl 161 (419)
.+..+...++|+||-|++.....+-+
T Consensus 71 ~~~~~~~~~vDvViEcTG~f~~~~~~ 96 (172)
T d2czca2 71 GTLNDLLEKVDIIVDATPGGIGAKNK 96 (172)
T ss_dssp CBHHHHHTTCSEEEECCSTTHHHHHH
T ss_pred chhhhhhccCCEEEECCCCCCCHHHH
Confidence 45556667899999999986654444
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.61 E-value=0.051 Score=45.30 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=54.6
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEe-cCCCCCCcchHHHHHHhcCcCCcc-CCCC-c-c-CCCeEec
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWV-FEETLPSGEKLTDVINRTNENVKY-LPGI-K-L-GKNVVAD 135 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~-r~~~~~~~~~l~~~i~~~g~~~~~-~~~~-~-l-~~~i~~~ 135 (419)
|.||||-|.|.+|..+.+.+.+.+. .+|..++ +++.. .....+.. +..... .++. . . ..++...
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~d------i~vvaInd~~~~~----~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~v~ 69 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDD------MKVIGVSKTRPDF----EARMALKK-GYDLYVAIPERVKLFEKAGIEVA 69 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSS------EEEEEEEESSCSH----HHHHHHHT-TCCEEESSGGGHHHHHHTTCCCC
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCC------ceEEEEecCCcHH----HHHHHHhc-CCceEecccccceeecccCcccC
Confidence 6799999999999999999887762 5655444 33321 11122221 211100 0000 0 0 0112223
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEE
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAI 175 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiiv 175 (419)
.+..++..++|+||-|++.....+-++ +++..+.-+|
T Consensus 70 g~~~~~~~~vDvViEcTG~f~~~~~~~---~hl~~G~K~v 106 (171)
T d1cf2o1 70 GTVDDMLDEADIVIDCTPEGIGAKNLK---MYKEKGIKAI 106 (171)
T ss_dssp EEHHHHHHTCSEEEECCSTTHHHHHHH---HHHHTTCEEE
T ss_pred CChhHhhcCCCEEEEccCCCCCHHHHH---HHHHcCCCEE
Confidence 345556779999999999865544333 3333444443
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.56 E-value=0.046 Score=45.04 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=55.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH-
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN- 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e- 140 (419)
.+|.|+|+|.+|...++.+...| .++.+.++++++ .+..++.|... +.-+.+...
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~G-------a~~i~~~~~~~~------~~~a~~lGad~-----------~i~~~~~~~~ 87 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMG-------AHVVAFTTSEAK------REAAKALGADE-----------VVNSRNADEM 87 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESSGGG------HHHHHHHTCSE-----------EEETTCHHHH
T ss_pred CEEEEeccchHHHHHHHHhhccc-------ccchhhccchhH------HHHHhccCCcE-----------EEECchhhHH
Confidence 47999999999999888888888 788888887765 45555555321 111122211
Q ss_pred --HhcCCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEe
Q 014757 141 --AVKDANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 141 --a~~~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~ 177 (419)
..+..|++|.++... .+...++ .+.++-.++.+
T Consensus 88 ~~~~~~~D~vid~~g~~~~~~~~~~----~l~~~G~iv~~ 123 (168)
T d1uufa2 88 AAHLKSFDFILNTVAAPHNLDDFTT----LLKRDGTMTLV 123 (168)
T ss_dssp HTTTTCEEEEEECCSSCCCHHHHHT----TEEEEEEEEEC
T ss_pred HHhcCCCceeeeeeecchhHHHHHH----HHhcCCEEEEe
Confidence 234689999999864 4555543 33444444443
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.55 E-value=0.029 Score=43.53 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=32.8
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.++|+|||.|.+|.=+|..|++.| .+|+++.|.+..
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g-------~~vt~i~~~~~~ 57 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATG-------RRTVMLVRTEPL 57 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhcc-------hhheEeeccchh
Confidence 368999999999999999999999 899999998654
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.021 Score=50.78 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=31.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
+..||+|||+|.=|.+-|..|+++| ++|+++..+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G-------~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFG-------MDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTT-------CEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC-------CCEEEEeCCC
Confidence 4468999999999999999999999 8999998754
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.019 Score=41.53 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=31.5
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|++|+|||.|..|..++..-.+-| ++|.+++.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG-------~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLG-------IAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGT-------EEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcC-------CEEEEEcCCCC
Confidence 578999999999999999999999 89999997654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.49 E-value=0.017 Score=48.39 Aligned_cols=82 Identities=12% Similarity=0.063 Sum_probs=51.0
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHHh
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENAV 142 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea~ 142 (419)
+|.|+|+|.+|...++.+...|. ..|++.++++++ .+..++.|.... +. . -..+..+.+
T Consensus 30 ~VlI~GaG~vGl~~~q~ak~~Ga------~~Vi~~d~~~~r------~~~a~~lGa~~~------i~--~-~~~~~~~~v 88 (174)
T d1jqba2 30 SVVVIGIGAVGLMGIAGAKLRGA------GRIIGVGSRPIC------VEAAKFYGATDI------LN--Y-KNGHIEDQV 88 (174)
T ss_dssp CEEEECCSHHHHHHHHHHHTTTC------SCEEEECCCHHH------HHHHHHHTCSEE------EC--G-GGSCHHHHH
T ss_pred EEEEEcCCcchhhhhhhhhcccc------cccccccchhhh------HHHHHhhCcccc------cc--c-cchhHHHHH
Confidence 69999999999998888887882 478999987655 344455453210 00 0 011222211
Q ss_pred ------cCCCEEEEccCcch-HHHHHHHHh
Q 014757 143 ------KDANMLVFVTPHQF-MEGICKRLV 165 (419)
Q Consensus 143 ------~~aDlVilavp~~~-~~~vl~~l~ 165 (419)
..+|+||-|+.... ++..++-+.
T Consensus 89 ~~~t~g~G~D~vid~~g~~~~~~~a~~~~~ 118 (174)
T d1jqba2 89 MKLTNGKGVDRVIMAGGGSETLSQAVKMVK 118 (174)
T ss_dssp HHHTTTSCEEEEEECSSCTTHHHHHHHHEE
T ss_pred HHHhhccCcceEEEccCCHHHHHHHHHHHh
Confidence 24899999998744 555554443
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.43 E-value=0.035 Score=43.86 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=50.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCce-EEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDE-VRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~-V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
-+|.|+|||.+|.+++..+.... +++ |.++|-++.+ + |.. ..+.+ +...++.++
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~~------~~~iv~fiDdd~~k---------~---G~~---I~Gi~----V~~~~~l~~ 58 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFGE------SFELRGFFDVDPEK---------V---GRP---VRGGV----IEHVDLLPQ 58 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCS------SEEEEEEEESCTTT---------T---TCE---ETTEE----EEEGGGHHH
T ss_pred ceEEEEcCCHHHHHHHHhHhhcC------CcEEEEEEeCchHh---------c---CCE---ECCEE----EecHHHHHH
Confidence 48999999999999988764432 155 4567766654 1 111 11111 222344444
Q ss_pred Hh-cCCCEEEEccCcchHHHHHHHHhc
Q 014757 141 AV-KDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 141 a~-~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
.. ...+++++++|+...+++.+.+..
T Consensus 59 ~~~~~i~iai~~i~~~~~~~I~d~l~~ 85 (126)
T d2dt5a2 59 RVPGRIEIALLTVPREAAQKAADLLVA 85 (126)
T ss_dssp HSTTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHhhcccEEEEeCCHHHHHHHHHHHHH
Confidence 33 357899999999888888877754
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.28 E-value=0.052 Score=43.88 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=32.2
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
...-++|.|||.|.+|..-+..|.++| -+|++++.+
T Consensus 10 ~l~gkrvLViGgG~va~~ka~~Ll~~G-------A~VtVvap~ 45 (150)
T d1kyqa1 10 QLKDKRILLIGGGEVGLTRLYKLMPTG-------CKLTLVSPD 45 (150)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGT-------CEEEEEEEE
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHHCC-------CEEEEEeCC
Confidence 455579999999999999999999999 899999765
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.28 E-value=0.027 Score=49.04 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=34.5
Q ss_pred CCCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 58 VLHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 58 ~~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.....||.|||+|.-|...|..|++.| ++|++++++.+.
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G-------~~v~l~E~~~~~ 84 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESG-------YTVHLTDTAEKI 84 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSSST
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhc-------cceeeEeecccc
Confidence 345679999999999999999999999 999999987653
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.26 E-value=0.017 Score=52.07 Aligned_cols=34 Identities=9% Similarity=0.274 Sum_probs=30.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+|.|||+|.+|.+.|..|++.|. ++|+++++++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~------~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGW------NNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC------CCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC------CcEEEEeCCC
Confidence 379999999999999999999982 4799999874
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.17 E-value=0.024 Score=47.85 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=30.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|||.|||+|..|.-+|..|.+.+. ..+|+++.|++.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~-----~~~V~v~~~~~~ 36 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHP-----DAEIQWYEKGDF 36 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCT-----TSEEEEEESSSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCC-----CCeEEEEeCCCc
Confidence 899999999999999999998751 158999988653
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.13 E-value=0.03 Score=51.77 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=35.3
Q ss_pred CCCCCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 56 DGVLHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 56 ~~~~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
-|+..-|||.|.| +|-+|+.++..|.+.| |+|+++++...
T Consensus 10 ~~~~~nMKILVTGgsGfIGs~lv~~L~~~g-------~~V~~~d~~~~ 50 (363)
T d2c5aa1 10 YWPSENLKISITGAGGFIASHIARRLKHEG-------HYVIASDWKKN 50 (363)
T ss_dssp SCTTSCCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSCC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHCc-------CEEEEEeCCCc
Confidence 3677789999998 6999999999999999 99999987653
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.13 E-value=0.028 Score=44.38 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=33.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..++.|||+|.+|.=+|..|++.| .+|+++.+.++.
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G-------~~Vtive~~~~i 61 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLG-------SRLDVVEMMDGL 61 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHT-------CEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCC-------CEEEEEEeeccc
Confidence 358999999999999999999999 899999998754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.10 E-value=0.023 Score=47.36 Aligned_cols=79 Identities=13% Similarity=-0.008 Sum_probs=48.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
.+|.|+|+|.+|...+..+...|. ..|.+.++++++ .+..++.|...... + -..+..+.
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~------~~v~~~~~~~~k------~~~a~~~Ga~~~i~-----~----~~~~~~~~ 88 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGA------SIIIAVDIVESR------LELAKQLGATHVIN-----S----KTQDPVAA 88 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTC------SEEEEEESCHHH------HHHHHHHTCSEEEE-----T----TTSCHHHH
T ss_pred CEEEEeCCCHHHhhhhhccccccc------ceeeeeccHHHH------HHHHHHcCCeEEEe-----C----CCcCHHHH
Confidence 369999999999999998888882 455667776654 45555545321000 0 01222222
Q ss_pred h-----cCCCEEEEccCcch-HHHHH
Q 014757 142 V-----KDANMLVFVTPHQF-MEGIC 161 (419)
Q Consensus 142 ~-----~~aDlVilavp~~~-~~~vl 161 (419)
+ ...|+||.|+.... ++..+
T Consensus 89 i~~~t~gg~D~vid~~G~~~~~~~~~ 114 (174)
T d1f8fa2 89 IKEITDGGVNFALESTGSPEILKQGV 114 (174)
T ss_dssp HHHHTTSCEEEEEECSCCHHHHHHHH
T ss_pred HHHHcCCCCcEEEEcCCcHHHHHHHH
Confidence 2 24799999998754 44443
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.037 Score=45.86 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=53.3
Q ss_pred cCeEEEECcch-HHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGSGN-WGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGaG~-mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
-++|+|||-+. +|.+++..|.+.| ..|++..... .++.
T Consensus 37 GK~v~VIGrS~~VG~Pla~lL~~~g-------atVt~~h~~t----------------------------------~~l~ 75 (166)
T d1b0aa1 37 GLNAVVIGASNIVGRPMSMELLLAG-------CTTTVTHRFT----------------------------------KNLR 75 (166)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTT-------CEEEEECSSC----------------------------------SCHH
T ss_pred cceEEEEeccccccHHHHHHHHHhh-------cccccccccc----------------------------------chhH
Confidence 46899999655 9999999999999 8888776432 2233
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
+..++||+||.++....+ + -..++++++++|+.
T Consensus 76 ~~~~~ADivI~a~G~p~~---i--~~~~vk~g~vvIDv 108 (166)
T d1b0aa1 76 HHVENADLLIVAVGKPGF---I--PGDWIKEGAIVIDV 108 (166)
T ss_dssp HHHHHCSEEEECSCCTTC---B--CTTTSCTTCEEEEC
T ss_pred HHHhhhhHhhhhccCccc---c--cccccCCCcEEEec
Confidence 446789999999986433 1 13577899999986
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.98 E-value=0.025 Score=45.20 Aligned_cols=97 Identities=15% Similarity=0.238 Sum_probs=61.7
Q ss_pred cCeEEEECc----------chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC--CCcchHHHHHHhcCcCCccCCCCcc
Q 014757 61 KSKVTVVGS----------GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL--PSGEKLTDVINRTNENVKYLPGIKL 128 (419)
Q Consensus 61 ~mkI~IIGa----------G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~--~~~~~l~~~i~~~g~~~~~~~~~~l 128 (419)
..||+|+|+ ++-...++..|.+.| .+|.+||.--+. ..... .+.+...- +.
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g-------~~V~~~DP~v~~~~~~~~~-~~~~~~~~------~~--- 75 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKG-------YELRIFDRNVEYARVHGAN-KEYIESKI------PH--- 75 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTT-------CEEEEECHHHHHHTTSSSC-HHHHHHTS------HH---
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhh-------ccccccCCCCCHHHHhhhh-hhhhhhcc------cc---
Confidence 358899986 467788999999999 899999852100 00000 01111100 00
Q ss_pred CCCeEecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeec
Q 014757 129 GKNVVADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 129 ~~~i~~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~n 179 (419)
.+....+++.+++.++|+||++++.....++. ..+.++.+|+++.+
T Consensus 76 -~~~~~~~~~~e~i~~~D~ivi~t~h~~f~~l~----~~~~~~~~I~D~~~ 121 (136)
T d1mv8a3 76 -VSSLLVSDLDEVVASSDVLVLGNGDELFVDLV----NKTPSGKKLVDLVG 121 (136)
T ss_dssp -HHTTBCSCHHHHHHHCSEEEECSCCGGGHHHH----HSCCTTCEEEESSS
T ss_pred -ccceeehhhhhhhhhceEEEEEeCCHHHHHHH----HHhcCCCEEEECCC
Confidence 01124578888999999999999998766543 33456789999864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.98 E-value=0.028 Score=46.16 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=35.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTN 117 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g 117 (419)
.+|.|+|+|.+|...+..+...| .+|.+.++++++ .+..++.|
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G-------~~Vi~~~~~~~~------~~~a~~~G 71 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMG-------LHVAAIDIDDAK------LELARKLG 71 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CEEEEEESCHHH------HHHHHHTT
T ss_pred CEEEEeeccccHHHHHHHHHHcC-------CccceecchhhH------HHhhhccC
Confidence 47999999999999888888888 899999988765 45555555
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=93.77 E-value=0.025 Score=50.08 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=33.6
Q ss_pred CcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.++||.|+|+ |.+|+.++..|.++| ++|++++|++..
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G-------~~V~~l~R~~~~ 39 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLG-------HPTFLLVRESTA 39 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-------CCEEEECCCCCT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-------CeEEEEECCCcc
Confidence 4689999995 999999999999999 999999998754
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.071 Score=44.33 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=54.8
Q ss_pred CcCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-++|+|||-+ .+|.++|..|++.| ..|++++.... ++
T Consensus 38 ~Gk~vvVIGrS~iVGrPLa~lL~~~g-------atVt~~~~~t~----------------------------------~l 76 (170)
T d1a4ia1 38 AGRHAVVVGRSKIVGAPMHDLLLWNN-------ATVTTCHSKTA----------------------------------HL 76 (170)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTT-------CEEEEECTTCS----------------------------------SH
T ss_pred ccceEEEEecCCccchHHHHHHHhcc-------CceEEEecccc----------------------------------cH
Confidence 33689999975 59999999999999 88998875432 23
Q ss_pred HHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 139 ENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 139 ~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
.+..+++|+||.++....+ + -..+++++.+|++.
T Consensus 77 ~~~~~~aDivi~a~G~~~~---i--~~~~vk~g~iviDv 110 (170)
T d1a4ia1 77 DEEVNKGDILVVATGQPEM---V--KGEWIKPGAIVIDC 110 (170)
T ss_dssp HHHHTTCSEEEECCCCTTC---B--CGGGSCTTCEEEEC
T ss_pred HHHHhhccchhhccccccc---c--ccccccCCCeEecc
Confidence 3346789999999987543 1 13578899999987
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.73 E-value=0.083 Score=43.83 Aligned_cols=74 Identities=12% Similarity=-0.066 Sum_probs=49.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC--HH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD--LE 139 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~--~~ 139 (419)
.+|.|+|+|.+|...++.+...|. ..|.+.++++++ .+..++.|...... . ...| .+
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~------~~Vi~~d~~~~k------l~~a~~lGa~~~i~--------~-~~~d~~~~ 87 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGA------SRIIGVGTHKDK------FPKAIELGATECLN--------P-KDYDKPIY 87 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC------SEEEEECSCGGG------HHHHHHTTCSEEEC--------G-GGCSSCHH
T ss_pred CEEEEECCCchhHHHHHHHHHcCC------ceeeccCChHHH------HHHHHHcCCcEEEc--------C-CCchhHHH
Confidence 379999999999999999988883 578999998776 55556655431100 0 0011 12
Q ss_pred HHh-----cCCCEEEEccCcch
Q 014757 140 NAV-----KDANMLVFVTPHQF 156 (419)
Q Consensus 140 ea~-----~~aDlVilavp~~~ 156 (419)
+.. ...|++|.++-...
T Consensus 88 ~~~~~~~~~G~d~vid~~g~~~ 109 (174)
T d1p0fa2 88 EVICEKTNGGVDYAVECAGRIE 109 (174)
T ss_dssp HHHHHHTTSCBSEEEECSCCHH
T ss_pred HHHHHhcCCCCcEEEEcCCCch
Confidence 211 36899999998744
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.46 E-value=0.026 Score=46.31 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=35.4
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCc
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNE 118 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~ 118 (419)
.+|.|+|+|.+|...+..+...| .+|.+.++++++ .+..++.|.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g-------~~v~~~~~~~~r------~~~~k~~Ga 72 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMG-------LNVVAVDIGDEK------LELAKELGA 72 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHTTC
T ss_pred CEEEEeecccchhhhhHHHhcCC-------CeEeccCCCHHH------hhhhhhcCc
Confidence 47999999999999888888888 789999887765 555666553
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=93.39 E-value=0.032 Score=49.50 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=29.8
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
-|.|||+|.+|.+.|..|+++| ++|.++++..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G-------~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQG-------VKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCC-------CcEEEEeCCC
Confidence 4899999999999999999999 8999999864
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=93.31 E-value=0.041 Score=44.81 Aligned_cols=36 Identities=33% Similarity=0.330 Sum_probs=30.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+||.|||+|..|..+|..|.+.+. +.+|+++++++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~-----~~~Vtlie~~~~ 38 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADP-----SIEVTLIEPNTD 38 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCT-----TSEEEEECSCSC
T ss_pred CcEEEECccHHHHHHHHHHHHcCC-----CCcEEEEECCCc
Confidence 589999999999999999999872 147899987763
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=0.037 Score=48.74 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=30.9
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.||.|||+|.+|+.++..|++.|. -.++++|.+.
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gv------g~i~lvD~D~ 64 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGV------GNLTLLDFDT 64 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC------SEEEEECCCB
T ss_pred CCEEEECCCHHHHHHHHHHHHcCC------CeEEEECCcc
Confidence 589999999999999999999995 6899998764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.15 E-value=0.059 Score=44.90 Aligned_cols=80 Identities=9% Similarity=-0.049 Sum_probs=50.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC-CHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP-DLEN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~-~~~e 140 (419)
.+|.|+|+|.+|...+..+...|. ..|++.++++++ .+..++.|....+.+ ...+ ..+.
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga------~~Vi~~d~~~~r------~~~a~~~Ga~~~i~~--------~~~~~~~~~ 89 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGA------SRIIAIDINGEK------FPKAKALGATDCLNP--------RELDKPVQD 89 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------SEEEEECSCGGG------HHHHHHTTCSEEECG--------GGCSSCHHH
T ss_pred CEEEEECCChHHHHHHHHHHHhCC------ceeeeeccchHH------HHHHHHhCCCcccCC--------ccchhhhhh
Confidence 379999999999999998888882 478888988766 455555553211100 0001 1111
Q ss_pred H-----hcCCCEEEEccCcch-HHHHH
Q 014757 141 A-----VKDANMLVFVTPHQF-MEGIC 161 (419)
Q Consensus 141 a-----~~~aDlVilavp~~~-~~~vl 161 (419)
. -..+|++|-|+.... ++..+
T Consensus 90 ~~~~~~~~G~d~vie~~G~~~~~~~a~ 116 (174)
T d1e3ia2 90 VITELTAGGVDYSLDCAGTAQTLKAAV 116 (174)
T ss_dssp HHHHHHTSCBSEEEESSCCHHHHHHHH
T ss_pred hHhhhhcCCCcEEEEecccchHHHHHH
Confidence 1 246899999998754 43433
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.032 Score=48.48 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=32.7
Q ss_pred CCcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 59 LHKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 59 ~~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|..+||.|.| +|.+|+.+...|.++|. -++|++++|++..
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~-----~~~v~~~~R~~~~ 52 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGL-----FSKVTLIGRRKLT 52 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTC-----CSEEEEEESSCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC-----CCEEEEEecChhh
Confidence 4457899999 59999999999999882 1489999998654
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.098 Score=41.52 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=29.5
Q ss_pred CeEEEECcchHHHHHHHHHHH----cCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIAS----NTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~----~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+|.|||+|..|.-+|..|++ .| .+|+++.+.+..
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g-------~~Vt~i~~~~~~ 76 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALG-------TEVIQLFPEKGN 76 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHT-------CEEEEECSSSST
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcC-------CEEEEecccccC
Confidence 489999999999999998864 46 799999987653
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=92.73 E-value=0.056 Score=49.62 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=33.6
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++++|.|+| +|.+|+.++..|.+.| ++|+++.|++..
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G-------~~V~~l~R~~~~ 39 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG-------HHVRAQVHSLKG 39 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-------CCEEEEESCSCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC-------CeEEEEECCcch
Confidence 467899999 5999999999999999 999999998765
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.69 E-value=0.19 Score=41.22 Aligned_cols=82 Identities=9% Similarity=-0.077 Sum_probs=52.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
.+|.|+|+|.+|...+..+...|. ..|.+.++++++ .+..++.|....... . ....+..+.
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~------~~Vi~~~~~~~k------~~~a~~~Ga~~~i~~----~---~~~~~~~~~ 90 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGA------ARIIGVDINKDK------FAKAKEVGATECVNP----Q---DYKKPIQEV 90 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------SEEEEECSCGGG------HHHHHHTTCSEEECG----G---GCSSCHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC------ceEEeecCcHHH------HHHHHHhCCeeEEec----C---CchhHHHHH
Confidence 369999999999999999999883 688999998876 455565553211000 0 000111111
Q ss_pred -----hcCCCEEEEccCcchH-HHHHH
Q 014757 142 -----VKDANMLVFVTPHQFM-EGICK 162 (419)
Q Consensus 142 -----~~~aDlVilavp~~~~-~~vl~ 162 (419)
-..+|++|.++..... +..+.
T Consensus 91 ~~~~~~~G~D~vid~~G~~~~~~~a~~ 117 (176)
T d2jhfa2 91 LTEMSNGGVDFSFEVIGRLDTMVTALS 117 (176)
T ss_dssp HHHHTTSCBSEEEECSCCHHHHHHHHH
T ss_pred HHHHhcCCCCEEEecCCchhHHHHHHH
Confidence 1368999999987554 43433
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=92.66 E-value=0.042 Score=48.24 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=32.2
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..|.|||+|.-|...|..|+++| ++|.++++++..
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G-------~~V~vlEk~~~~ 39 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLG-------KSVTVFDNGKKI 39 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCC-------CcEEEEecCCCC
Confidence 46999999999999999999999 899999998765
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=92.63 E-value=0.037 Score=48.75 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=30.5
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
|||.|.|+ |-+|+.++..|.+.| ++|...+|..
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g-------~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN-------VEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS-------EEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-------CEEEEeechh
Confidence 88999996 999999999999999 9999998864
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=92.60 E-value=0.07 Score=46.63 Aligned_cols=87 Identities=9% Similarity=0.023 Sum_probs=54.2
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH-hcCcCCccCCCCccCCCeEecCCH
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN-RTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~-~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
.-++|+|-|.|++|..+|..|.+.| ..|.+.+.+... ++.+. ..+. .. .++
T Consensus 38 ~g~~v~IqG~GnVG~~~a~~L~~~G-------akvv~~d~~~~~------~~~~~~~~g~--------------~~-~~~ 89 (230)
T d1leha1 38 EGLAVSVQGLGNVAKALCKKLNTEG-------AKLVVTDVNKAA------VSAAVAEEGA--------------DA-VAP 89 (230)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-------CEEEEECSCHHH------HHHHHHHHCC--------------EE-CCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-------CEEEeecccHHH------HHHHHHhcCC--------------cc-cCC
Confidence 3468999999999999999999999 788888765432 23332 2221 12 122
Q ss_pred HHHh-cCCCEEEEccCcchH-HHHHHHHhccCCCCcEEEEeec
Q 014757 139 ENAV-KDANMLVFVTPHQFM-EGICKRLVGKVNGDVEAISLIK 179 (419)
Q Consensus 139 ~ea~-~~aDlVilavp~~~~-~~vl~~l~~~l~~~tiivs~~n 179 (419)
++.. .+||+++-|--...+ ++.+++| + -.+|+-..|
T Consensus 90 ~~~~~~~cDIl~PcA~~~~I~~~~~~~l----~-ak~Ive~AN 127 (230)
T d1leha1 90 NAIYGVTCDIFAPCALGAVLNDFTIPQL----K-AKVIAGSAD 127 (230)
T ss_dssp GGTTTCCCSEEEECSCSCCBSTTHHHHC----C-CSEECCSCS
T ss_pred cccccccccEecccccccccChHHhhcc----C-ccEEEeccc
Confidence 3322 379999988766432 2223333 2 246666663
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.52 E-value=0.055 Score=48.70 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=29.7
Q ss_pred EEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 64 VTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 64 I~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|+|||+|.-|.+.|..|+++| ++|+++.++..
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G-------~~V~VlE~~~~ 33 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSG-------LNVVVLEARDR 33 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTT-------CCEEEEESSSS
T ss_pred EEEECCCHHHHHHHHHHHhCC-------CCEEEEecCCC
Confidence 899999999999999999999 89999997654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.46 E-value=0.084 Score=43.49 Aligned_cols=90 Identities=19% Similarity=0.151 Sum_probs=54.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH-HH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL-EN 140 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~-~e 140 (419)
.+|.|+|+|.+|...+..+...|. ..|.+.++++++ .+..++.|.... +....+. ++
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~------~~vv~~~~~~~k------~~~~~~~ga~~~----------i~~~~~~~~~ 91 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTP------ATVIALDVKEEK------LKLAERLGADHV----------VDARRDPVKQ 91 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCC------CEEEEEESSHHH------HHHHHHTTCSEE----------EETTSCHHHH
T ss_pred CEEEEeCCChHHHHHHHHHHhhcC------cccccccchhHH------HHHHhhccccee----------ecCcccHHHH
Confidence 469999999999998888877772 567788887655 455555442110 1111121 11
Q ss_pred Hh-----cCCCEEEEccCcch-HHHHHHHHhccCCCCcEEEEe
Q 014757 141 AV-----KDANMLVFVTPHQF-MEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 141 a~-----~~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs~ 177 (419)
.. ...|+||-++.... ++.. ...++++-.++.+
T Consensus 92 ~~~~~~~~g~d~vid~~g~~~~~~~a----~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 92 VMELTRGRGVNVAMDFVGSQATVDYT----PYLLGRMGRLIIV 130 (172)
T ss_dssp HHHHTTTCCEEEEEESSCCHHHHHHG----GGGEEEEEEEEEC
T ss_pred HHHhhCCCCceEEEEecCcchHHHHH----HHHHhCCCEEEEE
Confidence 11 25799999998754 4443 3444444444433
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=92.19 E-value=0.061 Score=46.60 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=31.3
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.|.|||+|..|...|..|+++| ++|.++++++..
T Consensus 4 DViIIGaG~aGl~aA~~la~~G-------~~V~liEk~~~~ 37 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEG-------ANVLLLDKGNKL 37 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC-------CcEEEEeCCCCC
Confidence 4999999999999999999999 899999987654
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=92.15 E-value=0.063 Score=48.72 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=32.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
...|+|||+|.-|.++|..|.++| .+|+++++.++.
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G-------~~v~i~Ek~~~i 42 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELG-------RSVHVIETAGDV 42 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHhCC-------CCEEEEEcCCCc
Confidence 357999999999999999999999 899999987654
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=92.07 E-value=0.051 Score=49.90 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=30.2
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.||||.|.| +|-+|+.++..|.++| ++|.+++++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g-------~~v~v~~~d 35 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNH-------PDVHVTVLD 35 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHC-------TTCEEEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCC-------CCeEEEEEe
Confidence 489999999 7999999999999999 887777765
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.95 E-value=0.056 Score=47.81 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=29.7
Q ss_pred CeEEEE-C-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVV-G-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~II-G-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+||++| | ++.+|.++|..|++.| .+|.+.+|+++.
T Consensus 1 KKValITGas~GIG~aia~~la~~G-------a~V~~~~r~~~~ 37 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDG-------FAVAIADYNDAT 37 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 477666 6 5779999999999999 899999998654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.56 E-value=0.19 Score=41.61 Aligned_cols=76 Identities=11% Similarity=-0.021 Sum_probs=49.5
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH--
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN-- 140 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e-- 140 (419)
.|.|+|+|.+|...+..+...|. .+|.++++++++ .+.-++.|......+. ......++
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~------~~Vi~vd~~~~k------l~~Ak~~GA~~~in~~-------~~~~~~~~~~ 92 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGA------SRIIGIDLNKDK------FEKAMAVGATECISPK-------DSTKPISEVL 92 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC------SEEEEECSCGGG------HHHHHHHTCSEEECGG-------GCSSCHHHHH
T ss_pred EEEEECCCchhHHHHHHHHHcCC------ceEEEecCcHHH------HHHHHhcCCcEEECcc-------ccchHHHHHH
Confidence 59999999999999999998883 579999998876 4545555532110000 00011111
Q ss_pred ---HhcCCCEEEEccCcchH
Q 014757 141 ---AVKDANMLVFVTPHQFM 157 (419)
Q Consensus 141 ---a~~~aDlVilavp~~~~ 157 (419)
.-...|++|.++.....
T Consensus 93 ~~~~g~G~d~vi~~~g~~~~ 112 (176)
T d1d1ta2 93 SEMTGNNVGYTFEVIGHLET 112 (176)
T ss_dssp HHHHTSCCCEEEECSCCHHH
T ss_pred HHhccccceEEEEeCCchHH
Confidence 12469999999987543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=91.51 E-value=0.085 Score=48.19 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=30.1
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
|||.|+| +|.+|+.++..|.+.| ++|++++|-.
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g-------~~V~~~d~~~ 34 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG-------HDVIILDNLC 34 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-------CEEEEEECCC
Confidence 8999998 5999999999999999 9999998743
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.51 E-value=0.073 Score=43.12 Aligned_cols=33 Identities=36% Similarity=0.357 Sum_probs=28.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.||.|||+|..|.-+|..|++ + .+|+++++.+.
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~-------~~Vtvv~~~~~ 33 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-T-------YEVTVIDKEPV 33 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-T-------SEEEEECSSSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-C-------CCEEEEecccc
Confidence 389999999999999999975 5 69999988653
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.46 E-value=0.097 Score=42.90 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=29.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+|.|||+|..|.-+|..|++.| .+|+++.+.++
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g-------~~v~v~~~~~~ 37 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASG-------WEGNIRLVGDA 37 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-------CCSEEEEECSC
T ss_pred CCEEEECCcHHHHHHHHHHHHcC-------CceEEEEecCc
Confidence 58999999999999999999999 78777765543
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=91.28 E-value=0.077 Score=48.11 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=30.5
Q ss_pred CeEEEECcchHHHHHHHHHH-----HcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIA-----SNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La-----~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.-|.|||+|..|.++|..|+ ++| ++|+++++.+..
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G-------~~v~vlEr~~~~ 47 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPD-------LKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTT-------CCEEEECSSSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCC-------CcEEEEcCCCCC
Confidence 46999999999999999997 478 899999987643
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.16 E-value=0.083 Score=43.33 Aligned_cols=92 Identities=11% Similarity=0.129 Sum_probs=54.3
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+|.|+|+ |.+|...+..+...|. ..|+++++++++ .+..++.|.... +.. ...++.+
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~------~~V~~~~~~~~~------~~~~~~~Ga~~~------i~~---~~~~~~~ 87 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSG------ATIIGVDVREEA------VEAAKRAGADYV------INA---SMQDPLA 87 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC------CEEEEEESSHHH------HHHHHHHTCSEE------EET---TTSCHHH
T ss_pred CEEEEEeccccceeeeeeccccccc------ccccccccchhh------HHHHHHcCCcee------ecc---CCcCHHH
Confidence 47999995 9999999988888883 588899988765 455555553210 000 0112211
Q ss_pred Hh------cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 141 AV------KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 141 a~------~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
.+ ...|+||-|+..... ++.....++++..++.+
T Consensus 88 ~~~~~~~~~~~d~vid~~g~~~~---~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 88 EIRRITESKGVDAVIDLNNSEKT---LSVYPKALAKQGKYVMV 127 (170)
T ss_dssp HHHHHTTTSCEEEEEESCCCHHH---HTTGGGGEEEEEEEEEC
T ss_pred HHHHHhhcccchhhhcccccchH---HHhhhhhcccCCEEEEe
Confidence 11 247999999886443 22233444454444433
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.12 E-value=0.19 Score=38.57 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=30.7
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
..+|+|||+|.+|.-+|..|.+-|.+. .+|+++.+.+..
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~----~~Vtli~~~~~i 58 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKD----GQVTLCYRGEMI 58 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTT----CEEEEEESSSSS
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCC----cEEEEEeccchh
Confidence 368999999999999998877655211 589999987654
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.75 E-value=0.13 Score=44.91 Aligned_cols=34 Identities=12% Similarity=0.279 Sum_probs=28.4
Q ss_pred CeEEEE-C-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVV-G-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~II-G-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|||.|| | ++-+|.++|..|++.| ++|.+.+|+++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~G-------a~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAG-------HQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECChH
Confidence 566555 6 5789999999999999 89999998754
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=90.75 E-value=0.16 Score=38.89 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=30.4
Q ss_pred cCeEEEECcchHHHHHHHHHHHc---CCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASN---TLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~---G~~~~~~~~~V~l~~r~~~~ 103 (419)
..+|+|||+|.+|.=+|..|++. | .+|+++.|.+..
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g-------~~Vtli~~~~~i 56 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARG-------GQVDLAYRGDMI 56 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTT-------CEEEEEESSSSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccc-------cccceecccccc
Confidence 36899999999999999877654 6 799999998754
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.68 E-value=0.091 Score=46.44 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=32.4
Q ss_pred eEEEE-C-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh
Q 014757 63 KVTVV-G-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR 115 (419)
Q Consensus 63 kI~II-G-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~ 115 (419)
|+++| | ++.+|.++|..|++.| .+|.+.+|+++. .+++.+++++
T Consensus 12 K~alITGas~GIG~aia~~la~~G-------a~V~~~~r~~~~--~~~~~~~l~~ 57 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAG-------ASVVVSDINADA--ANHVVDEIQQ 57 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTT-------CEEEEEESCHHH--HHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-------CEEEEEECCHHH--HHHHHHHHHH
Confidence 45555 5 6889999999999999 899999998654 2333444443
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=90.54 E-value=1 Score=38.52 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=61.3
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCC-Cc-----chHHHHHHhcCcCCccCCCCccCCCeE
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLP-SG-----EKLTDVINRTNENVKYLPGIKLGKNVV 133 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~-~~-----~~l~~~i~~~g~~~~~~~~~~l~~~i~ 133 (419)
...||.|+|+|.-|..+|..|.+.+. .+++++||.-=.+ ++ .+....+.+. .+ ...
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~~~------~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~-~~-----------~~~ 86 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDLGV------KNVVAVDRKGILNENDPETCLNEYHLEIARI-TN-----------PER 86 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC------CEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SC-----------TTC
T ss_pred hhcEEEEEChHHHHHHHHHHHHHhcc------cceEeecceeEEEcCcccccccHHHHHHHhh-hc-----------chh
Confidence 34689999999999999999999884 7899999862110 00 0000111110 00 011
Q ss_pred ecCCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecCc
Q 014757 134 ADPDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKGM 181 (419)
Q Consensus 134 ~~~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nGi 181 (419)
...+..+++..+++++.......+.+ +.+.. ..++-+|..++|..
T Consensus 87 ~~~~l~~~l~g~~~~~g~~~~~~~~~--e~m~~-~~~rPIIFpLSNPt 131 (222)
T d1vl6a1 87 LSGDLETALEGADFFIGVSRGNILKP--EWIKK-MSRKPVIFALANPV 131 (222)
T ss_dssp CCSCHHHHHTTCSEEEECSCSSCSCH--HHHTT-SCSSCEEEECCSSS
T ss_pred hhcchHhhccCcceeccccccccccH--HHHhh-cCCCCEEEecCCCc
Confidence 23456778889998877765433221 12333 35678899999854
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=90.54 E-value=0.22 Score=42.08 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=28.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|||.|||.|--|+-++..|.+.+. ..|.++.-+.+
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~------~~v~~iainTD 35 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGI------HGVEFVAVNTD 35 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCC------TTEEEEEEESC
T ss_pred CeEEEEEeCchHHHHHHHHHHcCC------CceEEEEEcCC
Confidence 689999999999999999999883 45666666554
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=90.40 E-value=0.096 Score=46.24 Aligned_cols=80 Identities=10% Similarity=0.009 Sum_probs=50.9
Q ss_pred eEEEE-C-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 63 KVTVV-G-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 63 kI~II-G-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
||++| | ++-+|.++|..|++.| .+|.+.+|+++. .+++.+++++.+
T Consensus 3 KValITGas~GIG~aia~~la~~G-------a~V~i~~r~~~~--l~~~~~~l~~~g----------------------- 50 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEG-------LRVFVCARGEEG--LRTTLKELREAG----------------------- 50 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTT-------CEEEEEESCHHH--HHHHHHHHHHTT-----------------------
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH--HHHHHHHHHhcC-----------------------
Confidence 67766 5 6789999999999999 899999998654 233334443322
Q ss_pred HhcCCCEEEEc---cCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 141 AVKDANMLVFV---TPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 141 a~~~aDlVila---vp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
.++..+. ....+++.+++++...+.+=.++|...
T Consensus 51 ----~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilVnnA 87 (257)
T d2rhca1 51 ----VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNA 87 (257)
T ss_dssp ----CCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred ----CcEEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEecc
Confidence 1222221 233667777877776665444666543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.34 E-value=0.25 Score=40.33 Aligned_cols=78 Identities=10% Similarity=-0.041 Sum_probs=50.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA 141 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea 141 (419)
.+|.|+|+|.+|...+..++..|. ..|+..++++++ .+..++.|........ ......++.
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~------~~Vi~~~~~~~r------l~~a~~~GAd~~in~~-------~~~~~~~~~ 90 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGA------KRIIAVDLNPDK------FEKAKVFGATDFVNPN-------DHSEPISQV 90 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------SEEEEECSCGGG------HHHHHHTTCCEEECGG-------GCSSCHHHH
T ss_pred CEEEEEecCCccchHHHHHHHHhh------chheeecchHHH------HHHHHHcCCcEEEcCC-------CcchhHHHH
Confidence 369999999999999999988873 578999988776 5666666642110000 000011111
Q ss_pred -----hcCCCEEEEccCcchHH
Q 014757 142 -----VKDANMLVFVTPHQFME 158 (419)
Q Consensus 142 -----~~~aDlVilavp~~~~~ 158 (419)
-...|++|.++-.....
T Consensus 91 ~~~~~~~G~d~vid~~G~~~~~ 112 (175)
T d1cdoa2 91 LSKMTNGGVDFSLECVGNVGVM 112 (175)
T ss_dssp HHHHHTSCBSEEEECSCCHHHH
T ss_pred HHhhccCCcceeeeecCCHHHH
Confidence 13689999999875543
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=90.04 E-value=0.68 Score=40.41 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=30.6
Q ss_pred cCeEEEECc-c--hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGS-G--NWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGa-G--~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
-+++.|.|+ | -+|.++|..|++.| .+|.+.+|+++.
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~G-------a~V~i~~r~~~~ 43 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQG-------ATLAFTYLNESL 43 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTT-------CEEEEEESSTTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCC-------CEEEEEeCCHHH
Confidence 357888886 5 49999999999999 999999998653
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=89.90 E-value=0.91 Score=39.62 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=32.0
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+-+++.|.| ++.||.++|..|++.| .+|.+.+|+++.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G-------~~V~i~~r~~~~ 42 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLG-------ARVYTCSRNEKE 42 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 446788888 6889999999999999 899999998654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.063 Score=44.38 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=50.3
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDLE 139 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~~ 139 (419)
.+|.|+|+ |.+|....+.....| .+|++.++++++ .+.+++.|.... +.. ..+..
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G-------~~vi~~~~~~~~------~~~~~~~Ga~~v----------i~~~~~~~~ 86 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYG-------LKILGTAGTEEG------QKIVLQNGAHEV----------FNHREVNYI 86 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTT-------CEEEEEESSHHH------HHHHHHTTCSEE----------EETTSTTHH
T ss_pred CEEEEEeccccccccccccccccC-------cccccccccccc------cccccccCcccc----------cccccccHH
Confidence 37999995 999999888888888 789888877654 455555553211 000 11222
Q ss_pred HHh------cCCCEEEEccCcchHHHHHHHH
Q 014757 140 NAV------KDANMLVFVTPHQFMEGICKRL 164 (419)
Q Consensus 140 ea~------~~aDlVilavp~~~~~~vl~~l 164 (419)
+.+ ...|+||-++....++..++-+
T Consensus 87 ~~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l 117 (174)
T d1yb5a2 87 DKIKKYVGEKGIDIIIEMLANVNLSKDLSLL 117 (174)
T ss_dssp HHHHHHHCTTCEEEEEESCHHHHHHHHHHHE
T ss_pred HHhhhhhccCCceEEeecccHHHHHHHHhcc
Confidence 211 2479999888765555554443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.82 E-value=0.34 Score=39.47 Aligned_cols=78 Identities=6% Similarity=-0.107 Sum_probs=47.9
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHHH-
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLENA- 141 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ea- 141 (419)
+|.|+|+|.+|...++.+...|. ..|.+.++++++ .+..++.|....... . ....+..+.
T Consensus 31 tVlI~GaGGvG~~aiq~ak~~G~------~~vi~~~~~~~k------~~~ak~lGa~~~i~~----~---~~~~~~~~~~ 91 (176)
T d2fzwa2 31 VCAVFGLGGVGLAVIMGCKVAGA------SRIIGVDINKDK------FARAKEFGATECINP----Q---DFSKPIQEVL 91 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC------SEEEEECSCGGG------HHHHHHHTCSEEECG----G---GCSSCHHHHH
T ss_pred EEEEecchhHHHHHHHHHHHHhc------CceEEEcccHHH------HHHHHHhCCcEEEeC----C---chhhHHHHHH
Confidence 69999999999998888888882 467777777665 455555553211000 0 001112111
Q ss_pred ----hcCCCEEEEccCcchHHH
Q 014757 142 ----VKDANMLVFVTPHQFMEG 159 (419)
Q Consensus 142 ----~~~aDlVilavp~~~~~~ 159 (419)
-..+|+||-++......+
T Consensus 92 ~~~~~~g~D~vid~~G~~~~~~ 113 (176)
T d2fzwa2 92 IEMTDGGVDYSFECIGNVKVMR 113 (176)
T ss_dssp HHHTTSCBSEEEECSCCHHHHH
T ss_pred HHHcCCCCcEeeecCCCHHHHH
Confidence 136899999998755433
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=89.75 E-value=0.089 Score=48.17 Aligned_cols=36 Identities=22% Similarity=0.097 Sum_probs=31.5
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
-++|.|.| +|.+|+.++..|.++| ++|....|+.++
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G-------~~V~~~vR~~~~ 47 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHG-------YKVRGTARSASK 47 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSHHH
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCc-------CEEEEEeCCchh
Confidence 36899999 5999999999999999 999988887543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.74 E-value=0.3 Score=43.00 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=29.1
Q ss_pred eEEEE-C-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVV-G-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~II-G-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|+++| | ++.+|.++|..|++.| .+|.+.+|+++.
T Consensus 6 KvalVTGas~GIG~aia~~la~~G-------a~V~~~~r~~~~ 41 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREG-------AKVTITGRHAER 41 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 56666 4 6899999999999999 899999998654
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.65 E-value=0.18 Score=41.85 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=56.8
Q ss_pred CCcCeEEEECcc-hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-c-
Q 014757 59 LHKSKVTVVGSG-NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-D- 135 (419)
Q Consensus 59 ~~~mkI~IIGaG-~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~- 135 (419)
..-+++.|||-+ .+|.++|..|++.| ..|+..+.+... .... +..... ..... ..+.. +
T Consensus 27 l~GK~vvVIGrS~iVG~Pla~lL~~~g-------aTVt~~~~~~~~--------~~~~-~~~~~~-~~~~~-~~~~~~~~ 88 (171)
T d1edza1 27 LYGKKCIVINRSEIVGRPLAALLANDG-------ATVYSVDVNNIQ--------KFTR-GESLKL-NKHHV-EDLGEYSE 88 (171)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTS-------CEEEEECSSEEE--------EEES-CCCSSC-CCCEE-EEEEECCH
T ss_pred CCCCEEEEECCccccHHHHHHHHHHCC-------CEEEEecccccc--------cccc-ccceee-eeecc-ccccccch
Confidence 334689999965 56999999999998 788877654211 0000 000000 00000 00111 1
Q ss_pred CCHHHHhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEee
Q 014757 136 PDLENAVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 136 ~~~~ea~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
+.+++....+|+||.+++...+. + -..++++|+++++..
T Consensus 89 ~~lk~~~~~aDIvIsavG~p~~~--i--~~d~ik~GavvIDvG 127 (171)
T d1edza1 89 DLLKKCSLDSDVVITGVPSENYK--F--PTEYIKEGAVCINFA 127 (171)
T ss_dssp HHHHHHHHHCSEEEECCCCTTCC--B--CTTTSCTTEEEEECS
T ss_pred hHHhhccccCCEEEEccCCCccc--c--ChhhcccCceEeecc
Confidence 12455566899999999875421 0 135678899999873
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.37 E-value=0.1 Score=45.99 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=28.6
Q ss_pred eEEEE-C-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVV-G-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~II-G-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
||++| | ++-+|.++|..|++.| ++|.+.+|+++.
T Consensus 11 KvalITGas~GIG~a~a~~la~~G-------a~V~~~~r~~~~ 46 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKSV-------SHVICISRTQKS 46 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTS-------SEEEEEESSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcC-------CEEEEEECCHHH
Confidence 56555 7 4789999999999999 899999998654
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.05 E-value=0.36 Score=41.20 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=29.5
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
...||.|||.|.-|+-++..|.+.|. ..|.++..+.+
T Consensus 14 ~~~ki~ViGvGGaG~n~v~~l~~~~~------~~v~~iainTD 50 (209)
T d2vapa1 14 TKAKITVVGCGGAGNNTITRLKMEGI------EGAKTVAINTD 50 (209)
T ss_dssp TCCCEEEEEEHHHHHHHHHHHHHHTC------TTEEEEEEESB
T ss_pred cCCcEEEEEeCChHHHHHHHHHHcCC------CceEEEEEeCC
Confidence 34799999999999999999999983 45666655544
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.04 E-value=0.97 Score=43.95 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=30.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..||.|||+|.+|+-++..|+..|. ..++++|.+.
T Consensus 25 ~s~VlvvG~gglG~Ei~knLvl~GV------g~itivD~d~ 59 (529)
T d1yova1 25 SAHVCLINATATGTEILKNLVLPGI------GSFTIIDGNQ 59 (529)
T ss_dssp HCEEEECCCSHHHHHHHHHHHTTTC------SEEEEECCSB
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcC------CEEEEEcCCc
Confidence 3589999999999999999999995 6899998654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=89.02 E-value=0.24 Score=39.77 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=29.5
Q ss_pred eEEEE--CcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVV--GSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~II--GaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++.|+ |.|.+|.-+|..|++.| ++|+++.+.+..
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G-------~~Vtlv~~~~~~ 76 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAG-------HEVTIVSGVHLA 76 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTT-------CEEEEEESSCTT
T ss_pred ceEEEecCCChHHHHHHHHHHHcC-------CeEEEEecCCcc
Confidence 45555 99999999999999999 999999998654
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=88.98 E-value=0.12 Score=42.65 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=26.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.+|.|||+|..|.-+|..|.+.| .+|+++.++
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g-------~~v~i~~~~ 35 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAG-------YQGLITVVG 35 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHT-------CCSCEEEEE
T ss_pred CCEEEECccHHHHHHHHHHHhcC-------CceEEEEEe
Confidence 36999999999999999999999 565554443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.90 E-value=0.15 Score=45.74 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=29.2
Q ss_pred eEEEE--CcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVV--GSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~II--GaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|++|| |+|.+|.++|..|+++| .+|.+.+|+.++
T Consensus 26 K~alITGas~GIG~aiA~~la~~G-------a~Vii~~r~~~~ 61 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLG-------AQCVIASRKMDV 61 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcC-------CEEEEEECCHHH
Confidence 56655 58999999999999999 999999998654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.83 E-value=1 Score=38.92 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=28.4
Q ss_pred eEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.|.|-|+ +.+|..+|..|+++| .+|.+++|+++.
T Consensus 9 v~lITGas~GIG~~ia~~la~~G-------~~V~l~~r~~~~ 43 (244)
T d1yb1a_ 9 IVLITGAGHGIGRLTAYEFAKLK-------SKLVLWDINKHG 43 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 3455575 669999999999999 899999998754
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=88.78 E-value=0.23 Score=45.09 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=32.3
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+||.|.| +|-+|+.++..|.+.| ++|..++|+...
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g-------~~V~~~~r~~~~ 44 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMG-------ATVKGYSLTAPT 44 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESSCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-------CEEEEEECCCCc
Confidence 7999999 6999999999999999 999999998754
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.74 E-value=0.45 Score=42.73 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=52.9
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
+++.|.| ++-+|.++|..|++.| ++|.+.+|+++. .+++.+++++.. .+
T Consensus 13 KvalITGas~GIG~aia~~la~~G-------a~Vvi~~r~~~~--l~~~~~el~~~~---------------------~~ 62 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELG-------SNVVIASRKLER--LKSAADELQANL---------------------PP 62 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH--HHHHHHHHHHTS---------------------CT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH--HHHHHHHHHhhh---------------------cc
Confidence 4455666 5779999999999999 899999998654 222333443311 00
Q ss_pred HhcCCCEEEEcc---CcchHHHHHHHHhccCCCCcEEEEee
Q 014757 141 AVKDANMLVFVT---PHQFMEGICKRLVGKVNGDVEAISLI 178 (419)
Q Consensus 141 a~~~aDlVilav---p~~~~~~vl~~l~~~l~~~tiivs~~ 178 (419)
..+.+++.+.. ...+++.+++++...+.+=.++|...
T Consensus 63 -~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 63 -TKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNG 102 (297)
T ss_dssp -TCCCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred -ccCceEEEEeccCCCHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 11334444433 23667777777766555545666654
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=88.72 E-value=0.2 Score=42.31 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=29.2
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
-|.|||+|.-|...|..+++.| .+|.++.+++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G-------~kV~iiE~~~ 35 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYG-------QKCALIEAKE 35 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT-------CCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCC-------CEEEEEeccC
Confidence 4899999999999999999999 8999998753
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.63 E-value=0.31 Score=42.28 Aligned_cols=34 Identities=9% Similarity=0.176 Sum_probs=29.0
Q ss_pred eEE-EEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVT-VVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~-IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|++ |.| ++.+|.++|..|++.| ++|.+.+|+++.
T Consensus 6 KvalITGas~GIG~aia~~la~~G-------~~V~~~~r~~~~ 41 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQG-------ASAVLLDLPNSG 41 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECTTSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEeCChHH
Confidence 555 455 5789999999999999 899999998876
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.33 E-value=0.21 Score=42.36 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=28.4
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+|-|||.|..|+-+...+.+.+. .+|.++..+.+
T Consensus 3 ~IkViGvGGaG~n~vn~~~~~~~------~~v~~iainTD 36 (198)
T d1rq2a1 3 VIKVVGIGGGGVNAVNRMIEQGL------KGVEFIAINTD 36 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTC------CSEEEEEEESC
T ss_pred eEEEEEeCchHHHHHHHHHHcCC------CCceEEEEcch
Confidence 68899999999999999999984 46777776654
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.31 E-value=0.17 Score=42.10 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=30.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
+..+|.|||+|.-|..-|..+++.| .+|.++++..
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar~g-------~~v~vie~~~ 38 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAARAE-------LKPLLFEGWM 38 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT-------CCCEEECCSS
T ss_pred ccceEEEECCCHHHHHHHHHHHHcC-------CcEEEEEeec
Confidence 3468999999999999999999999 8899998654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=88.19 E-value=0.35 Score=39.55 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=53.0
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH-H
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL-E 139 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~-~ 139 (419)
.+|.|.|+ |.+|....+.+...| .+|...++++++ .+.+++.|... +.-..+. .
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G-------~~vi~~~~~~~~------~~~~~~lGa~~-----------~i~~~~~~~ 84 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMG-------LRVLAAASRPEK------LALPLALGAEE-----------AATYAEVPE 84 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTT-------CEEEEEESSGGG------SHHHHHTTCSE-----------EEEGGGHHH
T ss_pred CEEEEEeccccchhhhhhhhcccc-------cccccccccccc------cccccccccce-----------eeehhhhhh
Confidence 47999995 999999888888888 789888887765 35555555321 1111121 1
Q ss_pred H--HhcCCCEEEEccCcchHHHHHHHHhccCCCCcEEEE
Q 014757 140 N--AVKDANMLVFVTPHQFMEGICKRLVGKVNGDVEAIS 176 (419)
Q Consensus 140 e--a~~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs 176 (419)
+ ....+|+||-++.. .+...+ ..++++..++.
T Consensus 85 ~~~~~~g~D~v~d~~G~-~~~~~~----~~l~~~G~~v~ 118 (171)
T d1iz0a2 85 RAKAWGGLDLVLEVRGK-EVEESL----GLLAHGGRLVY 118 (171)
T ss_dssp HHHHTTSEEEEEECSCT-THHHHH----TTEEEEEEEEE
T ss_pred hhhccccccccccccch-hHHHHH----HHHhcCCcEEE
Confidence 1 13468999988763 344433 44444444444
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.16 E-value=0.22 Score=40.98 Aligned_cols=90 Identities=9% Similarity=0.082 Sum_probs=56.3
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.+|.|.|+ |.+|...++.+...| .+|.+..+++++ .+.+++.|.... +.. -..+..+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g-------~~vi~~~~~~~~------~~~l~~~Ga~~v------i~~---~~~~~~~ 84 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIG-------ARIYTTAGSDAK------REMLSRLGVEYV------GDS---RSVDFAD 84 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHT-------CEEEEEESSHHH------HHHHHTTCCSEE------EET---TCSTHHH
T ss_pred CEEEEECCCCCcccccchhhcccc-------ccceeeeccccc------cccccccccccc------ccC---CccCHHH
Confidence 47999885 999999999888888 888888877654 466666553210 000 0112222
Q ss_pred Hh------cCCCEEEEccCcchHHHHHHHHhccCCCCcEEEEe
Q 014757 141 AV------KDANMLVFVTPHQFMEGICKRLVGKVNGDVEAISL 177 (419)
Q Consensus 141 a~------~~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~ 177 (419)
.+ ...|+||-++....++..++- ++++..+|.+
T Consensus 85 ~v~~~t~~~g~d~v~d~~g~~~~~~~~~~----l~~~G~~v~~ 123 (183)
T d1pqwa_ 85 EILELTDGYGVDVVLNSLAGEAIQRGVQI----LAPGGRFIEL 123 (183)
T ss_dssp HHHHHTTTCCEEEEEECCCTHHHHHHHHT----EEEEEEEEEC
T ss_pred HHHHHhCCCCEEEEEecccchHHHHHHHH----hcCCCEEEEE
Confidence 12 358999999987666655543 3344455544
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=88.07 E-value=0.33 Score=42.58 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=28.8
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++.|.| ++-+|.++|..|+++| ++|.+.+|+++.
T Consensus 11 ~alITGas~GIG~aia~~la~~G-------a~V~i~~r~~~~ 45 (260)
T d1h5qa_ 11 TIIVTGGNRGIGLAFTRAVAAAG-------ANVAVIYRSAAD 45 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------EEEEEEESSCTT
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 445556 5679999999999999 999999999865
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=88.06 E-value=0.22 Score=44.00 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=29.7
Q ss_pred eEEEECcchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~ 102 (419)
.|.|||+|.-|...|..|+++ | ++|+++++.+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G-------~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPN-------VQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTT-------SCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccC-------CeEEEEecCCC
Confidence 499999999999999999874 9 89999998764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.00 E-value=0.17 Score=44.84 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=35.4
Q ss_pred CeEEEE--CcchHHHHHHHHHHHc-CCCCCCCCceEEEEecCCCCCCcchHHHHHHh
Q 014757 62 SKVTVV--GSGNWGSVASKLIASN-TLRLSSFHDEVRMWVFEETLPSGEKLTDVINR 115 (419)
Q Consensus 62 mkI~II--GaG~mG~~lA~~La~~-G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~ 115 (419)
|+|+|| |.+-+|.++|..|++. | ..|.+.+|++++ .+++++.|++
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g-------~~Vi~~~r~~~~--~~~~~~~l~~ 50 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFS-------GDVVLTARDVTR--GQAAVQQLQA 50 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSS-------SEEEEEESSHHH--HHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCC-------CEEEEEECCHHH--HHHHHHHHHh
Confidence 689988 6799999999999986 7 899999998765 3444455554
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=87.72 E-value=0.29 Score=44.27 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=30.0
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
|||.|.| +|.+|+.++..|.++|+ ++|+++++...
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~------~~V~~ld~~~~ 36 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH------YEVYGLDIGSD 36 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT------CEEEEEESCCG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC------CEEEEEeCCCc
Confidence 7999999 59999999999999982 58999987643
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.71 E-value=0.22 Score=42.25 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=30.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
--|.|||+|.-|...|..+++.| .+|.+++..+.
T Consensus 6 yDviVIG~GpAGl~aA~~aa~~G-------~kV~lie~~~~ 39 (233)
T d1v59a1 6 HDVVIIGGGPAGYVAAIKAAQLG-------FNTACVEKRGK 39 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSSS
T ss_pred cCEEEECCCHHHHHHHHHHHHCC-------CcEEEEEecCC
Confidence 35999999999999999999999 89999997654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=87.60 E-value=0.74 Score=40.25 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=28.4
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+.|.| ++-+|.++|..|++.| .+|.+.+|+++.
T Consensus 6 ~alITGas~GIG~aia~~la~~G-------a~V~i~~r~~~~ 40 (258)
T d1iy8a_ 6 VVLITGGGSGLGRATAVRLAAEG-------AKLSLVDVSSEG 40 (258)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 455557 4679999999999999 899999998654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=87.38 E-value=0.21 Score=44.05 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=29.3
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+++.|.|+ +-||.++|..|++.| ++|.+.+|+++.
T Consensus 9 K~alITGas~GIG~aia~~la~~G-------a~V~~~~r~~~~ 44 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLG-------ASVYTCSRNQKE 44 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 45666675 679999999999999 899999998654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=87.30 E-value=0.21 Score=44.06 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=29.0
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+++.|.|+ +.+|.++|..|++.| .+|.+.+|+++.
T Consensus 6 K~alITGas~GIG~aia~~la~~G-------a~V~~~~r~~~~ 41 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEG-------TAIALLDMNREA 41 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 34566675 779999999999999 899999998654
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.20 E-value=0.31 Score=36.30 Aligned_cols=81 Identities=11% Similarity=0.033 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccchhcccCCcceeecccCccc-HHHHHHhhhccCCCCHHHHHHHHhcCCeeehH
Q 014757 283 TKAAIMRIGLREMRAFSKLLFSSVKDSTFFESCGVADLITTCLGGRN-RKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGV 361 (419)
Q Consensus 283 ~~~~l~~~~~~E~~~la~a~g~g~~~~~~~~~~~~~d~~~t~~~~rn-~~~g~~l~~~g~~~~~~~~~~~~~~g~~~Eg~ 361 (419)
...++-..-++|+..+|++. |+|...+.+..+...-+.. ++. ...|. +-+| .++ .
T Consensus 13 ~~~a~kIsf~Nel~~lc~~~--g~d~~~v~~~~~~d~ri~~---~~~~~~pG~--G~GG--~Cl---------------p 68 (98)
T d1mv8a1 13 VWHAAKVTFANEIGNIAKAV--GVDGREVMDVICQDHKLNL---SRYYMRPGF--AFGG--SCL---------------P 68 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TSCHHHHHHHHTTCTTTTT---SSTTCSCCS--CCCS--SSH---------------H
T ss_pred HHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHhcCccccc---cccccCCcc--cCCc--ccc---------------c
Confidence 34455667789999999999 4888777765443321100 111 11222 2112 564 5
Q ss_pred HHHHHHHHHHHHcCCCcCCcHHHHHHHH
Q 014757 362 STAREVYEVLSHRGWLELFPLFATVHEI 389 (419)
Q Consensus 362 ~~~~~v~~~a~~~gv~~~~P~~~~~~~~ 389 (419)
+|..++..++++.|+ +.++.+.+.+.
T Consensus 69 KD~~al~~~a~~~~~--~~~ll~~~~~~ 94 (98)
T d1mv8a1 69 KDVRALTYRASQLDV--EHPMLGSLMRS 94 (98)
T ss_dssp HHHHHHHHHHHHTTC--CCTTGGGHHHH
T ss_pred hhHHHHHHHHHHcCC--ChHHHHHHHHH
Confidence 688899999999999 89998887665
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.06 E-value=1.8 Score=37.35 Aligned_cols=36 Identities=14% Similarity=-0.051 Sum_probs=30.0
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
-+++.|.|+ +.+|.++|..|++.| ++|.+.+|+++.
T Consensus 5 gK~~lITGas~GIG~aia~~la~~G-------a~V~i~~r~~~~ 41 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAG-------CSVVVASRNLEE 41 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 355667774 779999999999999 899999998643
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=86.87 E-value=0.26 Score=40.72 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=29.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+|.|||.|..|..-|..+++.| .+|+++++..
T Consensus 6 ~dVvIIGGGpaGl~AA~~~ar~g-------~~v~iie~~~ 38 (190)
T d1trba1 6 SKLLILGSGPAGYTAAVYAARAN-------LQPVLITGME 38 (190)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT-------CCCEEECCSS
T ss_pred CcEEEECCCHHHHHHHHHHHHcC-------CceEEEEeec
Confidence 47999999999999999999999 8999998654
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=86.86 E-value=0.3 Score=41.06 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=30.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
--|.|||+|.-|...|..+++.| .+|.++++++.
T Consensus 4 yDvvVIGgGpaGl~aA~~aa~~G-------~kV~vie~~~~ 37 (221)
T d1dxla1 4 NDVVIIGGGPGGYVAAIKAAQLG-------FKTTCIEKRGA 37 (221)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHT-------CCEEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-------CcEEEEEecCC
Confidence 35899999999999999999999 89999987643
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.73 E-value=0.54 Score=43.66 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=30.1
Q ss_pred eEEEECcchHHHHHHHHHHH------cCCCCCCCCceEEEEecCCC
Q 014757 63 KVTVVGSGNWGSVASKLIAS------NTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~------~G~~~~~~~~~V~l~~r~~~ 102 (419)
-|.|||+|.-|++.|..|++ +| .+|.++++..+
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~G-------l~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKD-------LRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCC-------CCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCC-------CEEEEEcCCCC
Confidence 59999999999999999997 78 89999999764
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=86.71 E-value=0.13 Score=39.00 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=28.9
Q ss_pred CCcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
-.-++|+|||+|+=|.=+|..|++.+ ..|++..|...
T Consensus 30 f~gK~VlVVG~g~Sa~dia~~l~~~a-------k~v~~~~~r~~ 66 (107)
T d2gv8a2 30 FVGESVLVVGGASSANDLVRHLTPVA-------KHPIYQSLLGG 66 (107)
T ss_dssp GTTCCEEEECSSHHHHHHHHHHTTTS-------CSSEEEECTTC
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHhc-------CEEEEEEecCc
Confidence 34478999999999999999999877 56655555443
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=86.48 E-value=0.32 Score=44.42 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=29.5
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
-|.|||+|.-|+.+|..|+++| ++|.++.+..
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG-------~~VlvLEaG~ 35 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAG-------VQTLMLEMGQ 35 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSC
T ss_pred eEEEeCcCHHHHHHHHHHHHCc-------CeEEEEecCC
Confidence 3789999999999999999999 8999999864
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.47 E-value=0.31 Score=45.06 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=28.3
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEe
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWV 98 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~ 98 (419)
|||.|.| +|-+|+.++..|.+.| |+|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g-------~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKN-------YEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-------CEEEEEe
Confidence 7999999 5999999999999999 9999987
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.45 E-value=1.8 Score=37.60 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=32.8
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh
Q 014757 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR 115 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~ 115 (419)
.+.|.| ++.+|.++|..|+++| ++|.+++|+++. .+++.+++++
T Consensus 12 v~lITGas~GIG~aiA~~la~~G-------~~Vv~~~r~~~~--l~~~~~~l~~ 56 (257)
T d1xg5a_ 12 LALVTGASGGIGAAVARALVQQG-------LKVVGCARTVGN--IEELAAECKS 56 (257)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH--HHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH--HHHHHHHHHh
Confidence 455666 6899999999999999 899999998654 2333444443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=86.44 E-value=1.3 Score=38.12 Aligned_cols=34 Identities=21% Similarity=0.114 Sum_probs=28.0
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+.|-| ++-+|.++|..|++.| ++|.+.+|+++.
T Consensus 6 ~alITGas~GIG~a~a~~l~~~G-------~~Vv~~~r~~~~ 40 (243)
T d1q7ba_ 6 IALVTGASRGIGRAIAETLAARG-------AKVIGTATSENG 40 (243)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTT-------CEEEEEESSHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcC-------CEEEEEeCCHHH
Confidence 344446 5789999999999999 899999998654
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=86.35 E-value=0.36 Score=41.07 Aligned_cols=34 Identities=26% Similarity=0.162 Sum_probs=30.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
--|.|||+|.-|...|..+++.| .+|.++++.+.
T Consensus 7 yDviIIG~GPaGlsaA~~aa~~G-------~~V~viE~~~~ 40 (229)
T d1ojta1 7 YDVVVLGGGPGGYSAAFAAADEG-------LKVAIVERYKT 40 (229)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSSC
T ss_pred cCEEEECcCHHHHHHHHHHHHCC-------CeEEEEeccCC
Confidence 35899999999999999999999 89999997654
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.32 E-value=1.1 Score=35.91 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=52.9
Q ss_pred cCeEEEECc---chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGS---GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGa---G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
-.||++||= +++..+++..+..-| .++++.....-. -.+...+.+++.+. .+..++|
T Consensus 4 gl~i~~vGD~~~srV~~Sli~~~~~~g-------~~~~~~~P~~~~-~~~~~~~~~~~~~~------------~~~~~~d 63 (157)
T d1ml4a2 4 GLKIGLLGDLKYGRTVHSLAEALTFYD-------VELYLISPELLR-MPRHIVEELREKGM------------KVVETTT 63 (157)
T ss_dssp SEEEEEESCTTTCHHHHHHHHHGGGSC-------EEEEEECCGGGC-CCHHHHHHHHHTTC------------CEEEESC
T ss_pred CCEEEEEcCCccChHHHHHHHHHHhcC-------CcEEEEccchhh-cchHHHHHHHhhcc------------cceeecC
Confidence 368999996 689999999999988 899888764322 12333344444332 3567889
Q ss_pred HHHHhcCCCEEEEccCc
Q 014757 138 LENAVKDANMLVFVTPH 154 (419)
Q Consensus 138 ~~ea~~~aDlVilavp~ 154 (419)
+++++.++|+|....-.
T Consensus 64 ~~~av~~aDvvy~~~~~ 80 (157)
T d1ml4a2 64 LEDVIGKLDVLYVTRIQ 80 (157)
T ss_dssp THHHHTTCSEEEECCCC
T ss_pred HHHhhccCcEEEeeccc
Confidence 99999999998776543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.16 E-value=0.26 Score=43.66 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=29.2
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+++.|.| ++.+|.++|..|++.| .+|.+.+|+++.
T Consensus 6 K~alVTGas~GIG~aia~~la~~G-------a~V~l~~r~~~~ 41 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEG-------ANVTITGRSSER 41 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 3455556 5889999999999999 899999998654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.11 E-value=1.1 Score=38.78 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=29.5
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+++.|.| ++-+|.++|..|++.| .+|.+.+|+++.
T Consensus 7 K~alITGas~GIG~aia~~la~~G-------a~V~i~~r~~~~ 42 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSG-------ARVVICDKDESG 42 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 4566667 5899999999999999 899999998654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=86.08 E-value=0.98 Score=39.21 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=28.2
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
++.|.| ++-+|.++|..|++.| .+|.+.+|+++.
T Consensus 8 ~alVTGas~GIG~aia~~la~~G-------a~V~~~~r~~~~ 42 (251)
T d1zk4a1 8 VAIITGGTLGIGLAIATKFVEEG-------AKVMITGRHSDV 42 (251)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 444556 6889999999999999 899999997654
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=86.07 E-value=1.9 Score=37.29 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=27.1
Q ss_pred eEEEE-C-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVV-G-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~II-G-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
|+++| | ++.||.++|..|++.| .+|.+.+|++
T Consensus 5 K~alITGas~GIG~aiA~~la~~G-------a~V~~~~r~~ 38 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQG-------ADIVLNGFGD 38 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-------CEEEEECCSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEeCCc
Confidence 45555 5 6779999999999999 8999999875
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=85.93 E-value=1.9 Score=36.97 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=29.7
Q ss_pred cCeEEEECcc---hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVGSG---NWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIGaG---~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
-++|.|.|++ -+|.++|..|++.| ++|.+.+|+++.
T Consensus 5 gK~~lITGass~~GIG~aiA~~l~~~G-------~~V~i~~~~~~~ 43 (258)
T d1qsga_ 5 GKRILVTGVASKLSIAYGIAQAMHREG-------AELAFTYQNDKL 43 (258)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTT-------CEEEEEESSTTT
T ss_pred CCEEEEECCCCchhHHHHHHHHHHHcC-------CEEEEEeCCHHH
Confidence 3567777765 48999999999999 899999998654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=85.67 E-value=0.32 Score=41.04 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=30.0
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..|.|||+|..|...|..+++.| .+|.++++++
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G-------~~V~liE~~~ 38 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLG-------IPTVLVEGQA 38 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT-------CCEEEECSSC
T ss_pred cCEEEECCCHHHHHHHHHHHHCC-------CcEEEEecCC
Confidence 46999999999999999999999 8999998753
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=85.65 E-value=0.35 Score=43.84 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=29.7
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
-|.|||+|.-|+.+|..|+++| ++|.++.+..
T Consensus 6 DviIVGsG~aG~v~A~~La~~G-------~kVlvLEaG~ 37 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAG-------YKVAMFDIGE 37 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-------CEEEEECSSC
T ss_pred cEEEECcCHHHHHHHHHHhhCC-------CeEEEEecCC
Confidence 5899999999999999999999 8999998764
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.63 E-value=0.4 Score=42.95 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=29.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
++||.|.| +|-+|+.++..|.+.| ++|+.+++.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g-------~~V~~~d~~ 34 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG-------HEVTVVDNF 34 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-------CEEEEEeCC
Confidence 46899999 5999999999999999 999999864
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=85.38 E-value=0.37 Score=39.16 Aligned_cols=31 Identities=26% Similarity=0.216 Sum_probs=28.2
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFE 100 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~ 100 (419)
.|.|||+|..|...|..+++.| .+|.+++++
T Consensus 3 DViIIGgGpaGl~AAi~aar~G-------~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKG-------IRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT-------CCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcC-------CeEEEEEEe
Confidence 4899999999999999999999 899999864
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=85.36 E-value=0.24 Score=43.77 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=28.2
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+.|.| ++-+|.++|..|++.| .+|.+.+|+++.
T Consensus 8 valITGas~GIG~aia~~la~~G-------a~V~i~~r~~~~ 42 (268)
T d2bgka1 8 VAIITGGAGGIGETTAKLFVRYG-------AKVVIADIADDH 42 (268)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 445556 6789999999999999 899999998654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.20 E-value=0.31 Score=43.19 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=32.8
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR 115 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~ 115 (419)
+++.|.| ++-+|.++|..|++.| .+|.+.+|+++. .+++.+++.+
T Consensus 5 K~alITGas~GIG~aia~~la~~G-------a~V~~~~r~~~~--l~~~~~~i~~ 50 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEG-------AQVTITGRNEDR--LEETKQQILK 50 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-------CEEEEEESCHHH--HHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-------CEEEEEECCHHH--HHHHHHHHHH
Confidence 3455556 5789999999999999 899999998654 2333444444
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=85.18 E-value=0.36 Score=42.88 Aligned_cols=34 Identities=29% Similarity=0.246 Sum_probs=30.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
--|.|||+|.-|...|..|+++| .+|.++++.+.
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G-------~~V~lvEK~~~ 50 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSG-------AKVILIEKEPV 50 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCC-------CcEEEEecCCC
Confidence 35999999999999999999999 89999998653
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.09 E-value=1.1 Score=37.64 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=27.3
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEec
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVF 99 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r 99 (419)
|||+|+|.+.+|......|.++| ++|..+-.
T Consensus 1 MkI~~~G~~~~~~~~l~~L~~~~-------~~i~~V~t 31 (203)
T d2bw0a2 1 MKIAVIGQSLFGQEVYCHLRKEG-------HEVVGVFT 31 (203)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTT-------CEEEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHCC-------CcEEEEEc
Confidence 89999999999999999999999 88875543
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.92 E-value=1.1 Score=37.20 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=51.5
Q ss_pred cCeEEEECc--chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGS--GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGa--G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..||++||= -++..++...++.-| .++++.....-. -.+++.+.+++.... ....+..++++
T Consensus 5 ~lkia~vGD~~nnV~~Sli~~~~~~G-------~~l~l~~P~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~d~ 68 (185)
T d1dxha2 5 DISYAYLGDARNNMGNSLLLIGAKLG-------MDVRIAAPKALW-PHDEFVAQCKKFAEE--------SGAKLTLTEDP 68 (185)
T ss_dssp GCEEEEESCCSSHHHHHHHHHHHHTT-------CEEEEECCGGGS-CCHHHHHHHHHHHHH--------HTCEEEEESCH
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHcC-------CEEEEEccHHHH-hhhHHHHHHHHHhhc--------cCCeEEEEeCh
Confidence 468999994 489999999999999 899999864311 122333333321100 00136678999
Q ss_pred HHHhcCCCEEEEcc
Q 014757 139 ENAVKDANMLVFVT 152 (419)
Q Consensus 139 ~ea~~~aDlVilav 152 (419)
+++++++|+|..-+
T Consensus 69 ~eai~~aDvVyt~~ 82 (185)
T d1dxha2 69 KEAVKGVDFVHTDV 82 (185)
T ss_dssp HHHTTTCSEEEECC
T ss_pred hhccccccEEEeeh
Confidence 99999999988765
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.84 E-value=0.46 Score=39.82 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=29.0
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
-+.|||+|..|...|..+++.| .+|.+++++.
T Consensus 5 DviIIG~GpaG~~aA~~aar~G-------~kV~vIEk~~ 36 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELG-------ARAAVVESHK 36 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCC-------CEEEEEeccC
Confidence 3889999999999999999999 8999998754
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.65 E-value=0.22 Score=43.54 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=28.6
Q ss_pred eEEEE--CcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVV--GSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~II--GaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|+++| |++.+|.++|..|++.| ++|.+.+|+++.
T Consensus 7 K~alITGas~GIG~aia~~la~~G-------~~Vi~~~r~~~~ 42 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREG-------AKVIATDINESK 42 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcC-------CEEEEEeCCHHH
Confidence 45555 57999999999999999 999999998543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.32 E-value=0.88 Score=39.55 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=28.0
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
.+.|.| ++-+|.++|..|++.| .+|.+.+|+.+.
T Consensus 5 valITGas~GIG~aia~~la~~G-------a~V~i~~r~~~~ 39 (254)
T d2gdza1 5 VALVTGAAQGIGRAFAEALLLKG-------AKVALVDWNLEA 39 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 344446 5789999999999999 899999998654
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=84.31 E-value=0.69 Score=32.72 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=34.6
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTN 117 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g 117 (419)
-++|.|.|+ |.+|+...+.+...| .+|+...+++++ .+.+++.|
T Consensus 32 ~~~vlI~gasGgVG~~aiQlak~~G-------~~Vi~~t~s~~k------~~~~~~lG 76 (77)
T d1o8ca2 32 DGEIVVTGASGGVGSTAVALLHKLG-------YQVVAVSGREST------HEYLKSLG 76 (77)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTT-------CCEEEEESCGGG------HHHHHHHT
T ss_pred CCcEEEEeCCCcHHHHHHHHHHHcC-------CeEEEEECCHHH------HHHHHHCC
Confidence 357899875 999999888888888 899999988776 56565533
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.18 E-value=0.78 Score=39.81 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=28.7
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+.+.|.|+ +-+|.++|..|++.| ++|.+.+|+++.
T Consensus 7 K~alITGas~GIG~aia~~la~~G-------~~V~~~~r~~~~ 42 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEG-------AKVVFGDILDEE 42 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 34555574 779999999999999 899999998654
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=84.13 E-value=0.5 Score=40.31 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=27.9
Q ss_pred EEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 64 VTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 64 I~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+.|-| ++.+|.++|..|++.| ++|.+.+|+++.
T Consensus 4 alITGas~GIG~aiA~~la~~G-------a~V~i~~~~~~~ 37 (241)
T d1uaya_ 4 ALVTGGASGLGRAAALALKARG-------YRVVVLDLRREG 37 (241)
T ss_dssp EEEETTTSHHHHHHHHHHHHHT-------CEEEEEESSCCS
T ss_pred EEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCccc
Confidence 44445 5899999999999999 999999998754
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=84.08 E-value=2.7 Score=36.05 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=54.6
Q ss_pred CcCeEEEECcchHHHHHHHHHHH-cCCCCCCCCceEEEEe-c-----CCCCCCcchHHHHHHhcCcCCccCCCCccCCCe
Q 014757 60 HKSKVTVVGSGNWGSVASKLIAS-NTLRLSSFHDEVRMWV-F-----EETLPSGEKLTDVINRTNENVKYLPGIKLGKNV 132 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~-~G~~~~~~~~~V~l~~-r-----~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i 132 (419)
..++|+|=|.|++|...|..|++ .| ..|..++ . +++-.+.+++.+.....+....+ + ..
T Consensus 30 ~g~~vaIqG~GnVG~~~a~~L~~e~G-------a~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~------~-~~ 95 (234)
T d1b26a1 30 KKATVAVQGFGNVGQFAALLISQELG-------SKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTY------P-KG 95 (234)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHHC-------CEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTC------S-SC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcC-------CceEEeecCCCcEEeccccchHHHHHHHHhhcceecc------c-cc
Confidence 44789999999999999999974 58 5655443 2 23222333433333332321111 1 11
Q ss_pred EecCCHHHHhc-CCCEEEEccCcchHHHHHHHHhccCCCCcEEEEeecC
Q 014757 133 VADPDLENAVK-DANMLVFVTPHQFMEGICKRLVGKVNGDVEAISLIKG 180 (419)
Q Consensus 133 ~~~~~~~ea~~-~aDlVilavp~~~~~~vl~~l~~~l~~~tiivs~~nG 180 (419)
+.. +.++... +||+++-|--...+.+ +..+.+. -.+|+-..|+
T Consensus 96 ~~~-~~~~~~~~~~DI~~PcA~~~~I~~---~~a~~l~-~~~I~e~AN~ 139 (234)
T d1b26a1 96 ERI-TNEELLELDVDILVPAALEGAIHA---GNAERIK-AKAVVEGANG 139 (234)
T ss_dssp EEE-CHHHHHTSCCSEEEECSCTTCBCH---HHHTTCC-CSEEECCSSS
T ss_pred eee-ccccccccccceeecchhcccccH---HHHHHhh-hceEeecCCC
Confidence 222 2334444 8999888866543322 2233343 3466666664
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=84.08 E-value=0.84 Score=39.87 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=32.9
Q ss_pred CeEEEE-C-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHh
Q 014757 62 SKVTVV-G-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINR 115 (419)
Q Consensus 62 mkI~II-G-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~ 115 (419)
|-|+|| | ++-+|.++|..|++.| .+|.+.+++.+. ..+.+.+.+++
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~G-------a~V~i~~~~~~~-~~~~~~~~l~~ 49 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEG-------YAVCLHYHRSAA-EANALSATLNA 49 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT-------CEEEEEESSCHH-HHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcC-------CEEEEEeCCCHH-HHHHHHHHHHh
Confidence 457877 4 5789999999999999 899988776432 12334445544
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.08 E-value=0.52 Score=39.35 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=29.2
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.|.|||+|..|...|..+++.| .+|.++.+..
T Consensus 5 DviVIG~GpaGl~aA~~aar~G-------~kV~vIEk~~ 36 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLG-------QKVTIVEKGN 36 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCC-------CEEEEEecCC
Confidence 4899999999999999999999 8999998764
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=83.78 E-value=0.58 Score=42.64 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=30.8
Q ss_pred CcCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
..--+-|||+|.-|+.+|..|+++| ++|.++.+..
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLaeaG-------~~VlvLEaG~ 40 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQAG-------IPTQIVEMGR 40 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC-------CeEEEEeCCC
Confidence 3346899999999999999999999 8999999864
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.65 E-value=1.9 Score=34.71 Aligned_cols=75 Identities=21% Similarity=0.097 Sum_probs=49.0
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHHH
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLEN 140 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~e 140 (419)
.||+++|- .++..+++..|..-| .++++.....-. -.+++.+.+++.+.. ....+..++++.+
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g-------~~v~~~~P~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~d~~e 68 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLG-------ADVVVATPEGYE-PDEKVIKWAEQNAAE--------SGGSFELLHDPVK 68 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTT-------CEEEEECCTTCC-CCHHHHHHHHHHHHH--------HTCEEEEESCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC-------CeEEEecccccC-CChHHHHHHHHhhhc--------ccceEEEecCHHH
Confidence 68999995 567788888888888 788888764321 123333444332110 0113567889999
Q ss_pred HhcCCCEEEEcc
Q 014757 141 AVKDANMLVFVT 152 (419)
Q Consensus 141 a~~~aDlVilav 152 (419)
++.++|+|...+
T Consensus 69 a~~~adviy~~~ 80 (163)
T d1pvva2 69 AVKDADVIYTDV 80 (163)
T ss_dssp HTTTCSEEEECC
T ss_pred HhhhccEEeecc
Confidence 999999988654
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=83.55 E-value=1.7 Score=37.36 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=28.5
Q ss_pred CeEEEECcc---hHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSG---NWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG---~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+++.|.|++ -+|.++|..|++.| .+|.+.+|+++
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~G-------a~V~i~~~~~~ 45 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEAG-------AEVALSYQAER 45 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHTT-------CEEEEEESSGG
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCC-------CEEEEEeCcHH
Confidence 467777864 49999999999999 89998888754
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=83.54 E-value=1.4 Score=35.33 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=47.8
Q ss_pred cCeEEEECc---chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGS---GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGa---G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
..||++||= |++..++...++.-|. ..+++..... ....+.+.+.++..+. .+..+++
T Consensus 4 gl~i~~vGD~~nsrv~~Sli~~l~~~~~------~~~~~~~P~~-~~~~~~~~~~~~~~~~------------~~~~~~d 64 (160)
T d1ekxa2 4 NLHVAMVGDLKYGRTVHSLTQALAKFDG------NRFYFIAPDA-LAMPQYILDMLDEKGI------------AWSLHSS 64 (160)
T ss_dssp SCEEEEESCTTTCHHHHHHHHHHTTSSS------CEEEEECCGG-GCCCHHHHHHHHHTTC------------CEEECSC
T ss_pred CCEEEEEcCCCccHHHHHHHHHHHHcCC------CeEEeeccch-hhhhHHHHHHHhhhcc------------ccccccC
Confidence 468999996 5699999999988761 3445554322 2123343445555442 3567788
Q ss_pred HHHHhcCCCEEEEcc
Q 014757 138 LENAVKDANMLVFVT 152 (419)
Q Consensus 138 ~~ea~~~aDlVilav 152 (419)
+++++.++|+|....
T Consensus 65 ~~~a~~~aDvvy~~~ 79 (160)
T d1ekxa2 65 IEEVMAEVDILYMTR 79 (160)
T ss_dssp STTTGGGCSEEEECC
T ss_pred HHHHhCcCceEEeec
Confidence 888999999987543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.37 E-value=0.59 Score=39.05 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=22.5
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcC
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNT 84 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G 84 (419)
.+||.|+|+ |.+|..++..|.++|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~ 26 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEP 26 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC
Confidence 479999997 999999999999999
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=83.05 E-value=2.5 Score=34.34 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=50.1
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCc-------c-CCCeE
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIK-------L-GKNVV 133 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~-------l-~~~i~ 133 (419)
|||||=|.|.+|..+.+.+.+... .+|..++- .. +.+.++--++..-.+.+....+. + ...++
T Consensus 2 ikigINGFGRIGR~v~R~~~~~~~------i~ivaINd-~~--~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~ 72 (166)
T d1gado1 2 IKVGINGFGRIGRIVFRAAQKRSD------IEIVAIND-LL--DADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR 72 (166)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSS------EEEEEEEC-SS--CHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEE
T ss_pred eEEEEECCcHHHHHHHHHHhhCCC------eEEEEEeC-CC--CHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEE
Confidence 699999999999999999887751 45555552 21 33444444443221111111111 1 11233
Q ss_pred ec--CCHHHH---hcCCCEEEEccCcchHHHH
Q 014757 134 AD--PDLENA---VKDANMLVFVTPHQFMEGI 160 (419)
Q Consensus 134 ~~--~~~~ea---~~~aDlVilavp~~~~~~v 160 (419)
.+ .+|++. -.++|+||-|+-.....+-
T Consensus 73 i~~~~~p~~i~W~~~gvDiViEcTG~f~t~~~ 104 (166)
T d1gado1 73 VTAERDPANLKWDEVGVDVVAEATGLFLTDET 104 (166)
T ss_dssp EECCSSGGGGCHHHHTCSEEEECSSSCCSHHH
T ss_pred EEeCCChHHCCccccCCCEEEEccccccCHHH
Confidence 32 455542 1268999999987554443
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.98 E-value=0.56 Score=42.35 Aligned_cols=31 Identities=23% Similarity=0.070 Sum_probs=28.5
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEec
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVF 99 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r 99 (419)
+||.|.| +|-+|+.++..|.++| ++|+++++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g-------~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAG-------YLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT-------CCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCc-------CEEEEEEC
Confidence 4899998 5999999999999999 99999975
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=82.88 E-value=0.68 Score=39.68 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=30.8
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
-||.|.| .|.+|.++|..|+++| ++|.+.+|+++.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G-------~~V~~~~~~~~~ 38 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNG-------YTVLNIDLSAND 38 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-------EEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-------CEEEEEECCchh
Confidence 3788888 5999999999999999 999999998643
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=82.83 E-value=0.48 Score=42.45 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=30.7
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.-|.|||+|.-|...|..|+++| .+|.++.+.+.
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G-------~~V~llEk~~~ 57 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAG-------AKVILLEKEPI 57 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTT-------CCEEEECSSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCC-------CcEEEEeCCCC
Confidence 35999999999999999999999 89999998653
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.80 E-value=0.56 Score=42.30 Aligned_cols=35 Identities=14% Similarity=-0.008 Sum_probs=30.3
Q ss_pred CcCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 60 HKSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 60 ~~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
.+++|.|.| +|-+|+.++..|.+.| ++|..++|..
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g-------~~V~~~d~~~ 50 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLD-------QKVVGLDNFA 50 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCS
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc-------CEEEEEECCC
Confidence 346889988 5999999999999999 9999998743
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=82.67 E-value=0.6 Score=40.97 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=27.5
Q ss_pred eEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 63 KVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
.+.|.| ++.+|.++|..|++.| ++|.+.+|+.+
T Consensus 9 ~alITGas~GIG~aia~~la~~G-------~~Vv~~~r~~~ 42 (261)
T d1geea_ 9 VVVITGSSTGLGKSMAIRFATEK-------AKVVVNYRSKE 42 (261)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTT-------CEEEEEESSCH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCC-------CEEEEEeCCcH
Confidence 344445 6889999999999999 89999999754
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=82.49 E-value=0.24 Score=40.60 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=51.4
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEe-cCCHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVA-DPDLE 139 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~-~~~~~ 139 (419)
.+|.|.| +|.+|....+.....| .+|+..++++++ .+.+++.|.... +.. ..+..
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~G-------a~Vi~~~~s~~k------~~~~~~lGa~~v----------i~~~~~d~~ 86 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALG-------AKLIGTVGTAQK------AQSALKAGAWQV----------INYREEDLV 86 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHT-------CEEEEEESSHHH------HHHHHHHTCSEE----------EETTTSCHH
T ss_pred CEEEEEccccccchHHHHHHHHhC-------CeEeecccchHH------HHHHHhcCCeEE----------EECCCCCHH
Confidence 4799995 5669988888888888 899999988765 566666553211 000 12222
Q ss_pred HHh------cCCCEEEEccCcchHHHHHHHHh
Q 014757 140 NAV------KDANMLVFVTPHQFMEGICKRLV 165 (419)
Q Consensus 140 ea~------~~aDlVilavp~~~~~~vl~~l~ 165 (419)
+.+ ...|+|+-++........++.+.
T Consensus 87 ~~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~ 118 (179)
T d1qora2 87 ERLKEITGGKKVRVVYDSVGRDTWERSLDCLQ 118 (179)
T ss_dssp HHHHHHTTTCCEEEEEECSCGGGHHHHHHTEE
T ss_pred HHHHHHhCCCCeEEEEeCccHHHHHHHHHHHh
Confidence 211 24689888887776655554443
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=82.49 E-value=3.6 Score=33.48 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.5
Q ss_pred CeEEEECcchHHHHHHHHHHHcC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNT 84 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G 84 (419)
|||||=|.|.+|..+.+.+.+..
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~ 23 (172)
T d1rm4a1 1 LKVAINGFGRIGRNFLRCWHGRK 23 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 79999999999999999887654
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.40 E-value=0.51 Score=40.01 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=29.2
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
-|.|||+|.-|...|..+++.| .+|.+++..+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G-------~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFD-------KKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGC-------CCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHCC-------CeEEEEeccC
Confidence 4899999999999999999999 8999998654
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=82.40 E-value=0.57 Score=42.95 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=29.4
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
-+.|||+|.-|+.+|.+|+++| ++|.++.+..
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g-------~~VlvLEaG~ 35 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAG-------KKVLLLERGG 35 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-------CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHhhCC-------CeEEEEEccC
Confidence 4789999999999999999999 8999998874
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=82.26 E-value=0.69 Score=40.14 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=30.7
Q ss_pred CCcCeEEEECc-ch--HHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 59 LHKSKVTVVGS-GN--WGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 59 ~~~mkI~IIGa-G~--mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
++-+++.|.|+ |. ||.++|+.|++.| .+|.+.+|+.+
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~G-------a~Vil~~~~~~ 43 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQG-------AQLVLTGFDRL 43 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTT-------CEEEEEECSCH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcC-------CEEEEEeCChH
Confidence 34467888895 65 9999999999999 89999988764
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.26 E-value=0.6 Score=40.89 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=29.8
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
-+++.|.| ++.+|.++|..|++.| .+|.+.+|+++.
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~G-------a~V~~~~r~~~~ 44 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFG-------AVIHTCARNEYE 44 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 34566667 5779999999999999 899999998654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.24 E-value=0.52 Score=41.44 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=30.0
Q ss_pred CeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+++.|.|+ +-+|.++|..|++.| .+|.+.+|+++.
T Consensus 15 K~alITGassGIG~aiA~~la~~G-------~~Vil~~r~~~~ 50 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMG-------AHVVVTARSKET 50 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 46777785 669999999999999 899999998654
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.18 E-value=0.82 Score=33.38 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.6
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
|||.|||.|.=-+++|..|.+.. ++|+++--++
T Consensus 1 MkVLviGsGgREHAia~~l~~s~-------~~v~~~pGN~ 33 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQG-------YEVHFYPGNA 33 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTT-------CEEEEEECCT
T ss_pred CEEEEECCCHHHHHHHHHHhcCC-------CeEEEecCCc
Confidence 89999999999999999999987 7888774443
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=82.10 E-value=2.8 Score=33.42 Aligned_cols=73 Identities=19% Similarity=0.102 Sum_probs=50.3
Q ss_pred cCeEEEEC-c-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHH----hcCcCCccCCCCccCCCeEe
Q 014757 61 KSKVTVVG-S-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVIN----RTNENVKYLPGIKLGKNVVA 134 (419)
Q Consensus 61 ~mkI~IIG-a-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~----~~g~~~~~~~~~~l~~~i~~ 134 (419)
-.||++|| + .++-.++...++.-| .++++.....-.+ ...+.+... +.+ ..+..
T Consensus 3 g~ki~~vGD~~nnV~~Sli~~~~~~g-------~~i~~~~P~~~~~-~~~~~~~~~~~~~~~~------------~~i~~ 62 (161)
T d1vlva2 3 GVKVVFMGDTRNNVATSLMIACAKMG-------MNFVACGPEELKP-RSDVFKRCQEIVKETD------------GSVSF 62 (161)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHTT-------CEEEEESCGGGCC-CHHHHHHHHHHHHHHC------------CEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcC-------CEEEEecchhhhh-hhhHHHHHHHHHhhcC------------CceEE
Confidence 36899999 3 579999999999998 8998887643211 111122211 111 24678
Q ss_pred cCCHHHHhcCCCEEEEccC
Q 014757 135 DPDLENAVKDANMLVFVTP 153 (419)
Q Consensus 135 ~~~~~ea~~~aDlVilavp 153 (419)
+++++++++++|+|..-+-
T Consensus 63 ~~d~~~ai~~aDviyt~~~ 81 (161)
T d1vlva2 63 TSNLEEALAGADVVYTDVW 81 (161)
T ss_dssp ESCHHHHHTTCSEEEECCC
T ss_pred EecHHHhhhhhhheeccce
Confidence 8999999999999987663
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=82.01 E-value=0.55 Score=40.63 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=31.8
Q ss_pred CcCeEEEECc-chHHHHHHHHHH---HcCCCCCCCCceEEEEecCCCC
Q 014757 60 HKSKVTVVGS-GNWGSVASKLIA---SNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 60 ~~mkI~IIGa-G~mG~~lA~~La---~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+|++|.|-|+ +-+|.++|..|+ +.| +.|.+.+|+++.
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g-------~~V~~~~r~~~~ 41 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPP-------QHLFTTCRNREQ 41 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCC-------SEEEEEESCTTS
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCC-------CEEEEEECCHHH
Confidence 5788999996 889999999986 467 899999999876
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.98 E-value=0.79 Score=40.59 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.4
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+||-|.| +|-+|+.++..|.++| ++|+.++|...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g-------~~V~~~~r~~~ 35 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG-------YRVHGLVARRS 35 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-------CEEEEEECCCC
Confidence 4788998 5999999999999999 99999998764
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=81.89 E-value=0.35 Score=42.24 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=21.7
Q ss_pred CeEEEECc-chHHHHHHHHHHHcC
Q 014757 62 SKVTVVGS-GNWGSVASKLIASNT 84 (419)
Q Consensus 62 mkI~IIGa-G~mG~~lA~~La~~G 84 (419)
|||.|.|+ |-+|+.+...|.+.|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g 24 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG 24 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 89999995 999999999999998
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=81.85 E-value=2.6 Score=34.41 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNT 84 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G 84 (419)
|||||=|.|.+|..+.+.+.+.+
T Consensus 2 ikigINGfGRIGR~v~R~~~~~~ 24 (173)
T d1obfo1 2 IRVAINGYGRIGRNILRAHYEGG 24 (173)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT
T ss_pred eEEEEECCcHHHHHHHHHHHhCC
Confidence 79999999999999999988754
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=81.85 E-value=0.53 Score=41.61 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=29.3
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+++.|-| ++.+|.++|..|++.| .+|.+.+|+++.
T Consensus 6 K~alITGas~GIG~aia~~la~~G-------a~V~i~~r~~~~ 41 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEG-------AKVAVLDKSAER 41 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-------CEEEEEECCHHH
Confidence 3566667 5899999999999999 899999998643
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.78 E-value=0.52 Score=39.80 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=27.0
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+|.|||.|.-|+.++..|.+.+. ..|.++..+.+
T Consensus 3 ~IkViGvGGaG~n~v~~~~~~~~------~~v~~iainTD 36 (198)
T d1ofua1 3 VIKVIGVGGGGGNAVNHMAKNNV------EGVEFICANTD 36 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTC------CSEEEEEEESB
T ss_pred eEEEEEECchHHHHHHHHHHcCC------CCeEEEEEeCc
Confidence 68999999999999999999983 34655555543
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.68 E-value=9.5 Score=29.29 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=64.5
Q ss_pred CCCcCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecC
Q 014757 58 VLHKSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADP 136 (419)
Q Consensus 58 ~~~~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~ 136 (419)
-....||.|-|. |.-|+.-+....+.| -+|..- .+|.+ .|.. ..++.+.+
T Consensus 12 i~k~TrVivQGiTG~~G~~ht~~m~~YG-------T~iVaG-VtPgK------------gG~~---------~~giPVf~ 62 (130)
T d1euca1 12 VDKNTKVICQGFTGKQGTFHSQQALEYG-------TNLVGG-TTPGK------------GGKT---------HLGLPVFN 62 (130)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHT-------CEEEEE-ECTTC------------TTCE---------ETTEEEES
T ss_pred EcCCCeEEEEcCCCcHHHHHHHHHHHhc-------CCeEEe-eccCC------------CCcc---------ccCccchh
Confidence 344568999995 999999999999999 554322 23322 0110 01356778
Q ss_pred CHHHHhc--CCCEEEEccCcc-hHHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 137 DLENAVK--DANMLVFVTPHQ-FMEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 137 ~~~ea~~--~aDlVilavp~~-~~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
+.+||++ ++|.-++.||+. ..+.+++.+...+ ..||.++-|++.
T Consensus 63 tV~eA~~~~~~daSvIfVPp~~a~dAi~EAi~agI---~liV~ITEgIPv 109 (130)
T d1euca1 63 TVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEV---PLVVCITEGIPQ 109 (130)
T ss_dssp SHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHTTC---SEEEECCCCCCH
T ss_pred hHHHHHHhcCCcEEEEecCHHHHHHHHHHHHhCCC---CEEEEecCCCCH
Confidence 8888765 799999999985 4555556666544 478888988875
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=81.64 E-value=1.9 Score=35.44 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=51.0
Q ss_pred cCeEEEECcc--hHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCH
Q 014757 61 KSKVTVVGSG--NWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDL 138 (419)
Q Consensus 61 ~mkI~IIGaG--~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~ 138 (419)
..||+++|=| +|..+++..++.-| .++++.....-.. .+++.+.+++.... ....+..++++
T Consensus 5 ~l~i~~vGD~~nnv~~Sli~~~~~~g-------~~l~~~~P~~~~~-~~~~~~~~~~~~~~--------~g~~~~~~~d~ 68 (183)
T d1duvg2 5 EMTLVYAGDARNNMGNSMLEAAALTG-------LDLRLVAPQACWP-EAALVTECRALAQQ--------NGGNITLTEDV 68 (183)
T ss_dssp GCEEEEESCTTSHHHHHHHHHHHHHC-------CEEEEECCGGGCC-CHHHHHHHHHHHHH--------TTCEEEEESCH
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcC-------CEEEEEechHhhh-hHHHHHHHHHHHHh--------cCCceEEEech
Confidence 4689999954 79999999999999 8999887643211 12223333221100 01135678999
Q ss_pred HHHhcCCCEEEEccC
Q 014757 139 ENAVKDANMLVFVTP 153 (419)
Q Consensus 139 ~ea~~~aDlVilavp 153 (419)
++++.++|+|...+=
T Consensus 69 ~~a~~~aDvvyt~~w 83 (183)
T d1duvg2 69 AKGVEGADFIYTDVW 83 (183)
T ss_dssp HHHHTTCSEEEECCS
T ss_pred hhccccCCEEEEEeh
Confidence 999999999987553
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.62 E-value=1.5 Score=35.95 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=54.7
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCc-cCCCCccCCCeEecCCHH
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVK-YLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~-~~~~~~l~~~i~~~~~~~ 139 (419)
.+|.|-| +|.+|++..+.....| ..|+...+++++ .+.+++.|.... +..+. ....++. .+
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~G-------a~Viat~~s~~k------~~~~~~lGa~~vi~~~~~-~~~~~~~-~~-- 95 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRG-------YTVEASTGKAAE------HDYLRVLGAKEVLAREDV-MAERIRP-LD-- 95 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTT-------CCEEEEESCTTC------HHHHHHTTCSEEEECC-----------CC--
T ss_pred CEEEEEeccchHHHHHHHHHHHcC-------CceEEecCchHH------HHHHHhcccceeeecchh-HHHHHHH-hh--
Confidence 4699999 6999998888877888 899999988887 666676554311 00000 0000000 01
Q ss_pred HHhcCCCEEEEccCcchHHHHHHHHhc
Q 014757 140 NAVKDANMLVFVTPHQFMEGICKRLVG 166 (419)
Q Consensus 140 ea~~~aDlVilavp~~~~~~vl~~l~~ 166 (419)
-+..|+||-++-...+...+..+.+
T Consensus 96 --~~gvD~vid~vgg~~~~~~l~~l~~ 120 (176)
T d1xa0a2 96 --KQRWAAAVDPVGGRTLATVLSRMRY 120 (176)
T ss_dssp --SCCEEEEEECSTTTTHHHHHHTEEE
T ss_pred --ccCcCEEEEcCCchhHHHHHHHhCC
Confidence 1368999999988777776655554
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.60 E-value=0.6 Score=40.46 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=29.9
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
+++.|.| ++.+|.++|..|++.| ++|.+.+|+++.
T Consensus 8 K~~lITGas~GIG~aia~~la~~G-------~~V~~~~r~~~~ 43 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATG-------ARVVAVSRTQAD 43 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-------CEEEEEESCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcC-------CEEEEEECCHHH
Confidence 4677777 5889999999999999 899999998654
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.47 E-value=2.8 Score=34.78 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.0
Q ss_pred cCeEEEECcchHHHHHHHHHHHcC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNT 84 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G 84 (419)
+|||||=|.|.+|..+.+.+.+.+
T Consensus 2 ~ikigINGFGRIGR~vlR~~~~~~ 25 (190)
T d1k3ta1 2 PIKVGINGFGRIGRMVFQALCEDG 25 (190)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT
T ss_pred CeEEEEECCChHHHHHHHHHHHcC
Confidence 379999999999999999887764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.37 E-value=0.75 Score=41.26 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=29.7
Q ss_pred CeE-EEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCC
Q 014757 62 SKV-TVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEET 102 (419)
Q Consensus 62 mkI-~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~ 102 (419)
+|| .|.| +|-+|+.++..|.++| ++|+.++|...
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g-------~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKG-------YEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-------CEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCc-------CEEEEEECCCc
Confidence 489 5777 6999999999999999 99999999653
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=81.21 E-value=0.73 Score=39.92 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=29.2
Q ss_pred eEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 63 KVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 63 kI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
-+.|||+|.-|...|..+++.| .+|.+++++.
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G-------~~V~liE~~~ 34 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHN-------AKVALVEKSR 34 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT-------CCEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHHCC-------CeEEEEecCC
Confidence 3789999999999999999999 8999999753
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=81.16 E-value=0.69 Score=37.09 Aligned_cols=69 Identities=7% Similarity=0.122 Sum_probs=46.1
Q ss_pred cCeEEEECc---chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCC
Q 014757 61 KSKVTVVGS---GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPD 137 (419)
Q Consensus 61 ~mkI~IIGa---G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~ 137 (419)
-.||++||= |.+..+++..+++-| .++.++...+..... .+.....+ .++..++|
T Consensus 3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g-------~~~~~~~p~~~~~~~---~~~~~~~~------------~~~~~~~d 60 (153)
T d1pg5a2 3 GLVFALLGDLKYARTVNSLLRILTRFR-------PKLVYLISPQLLRAR---KEILDELN------------YPVKEVEN 60 (153)
T ss_dssp TCEEEEEECCSSCHHHHHHHHHGGGSC-------CSEEEEECCGGGCCC---HHHHTTCC------------SCEEEESC
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHcC-------CeeEEEecccccccc---hhhcccCC------------CeEEEEeC
Confidence 368999996 459999999999988 777666543321011 11122222 24667889
Q ss_pred HHHHhcCCCEEEEc
Q 014757 138 LENAVKDANMLVFV 151 (419)
Q Consensus 138 ~~ea~~~aDlVila 151 (419)
+++++.++|+|...
T Consensus 61 ~~eai~~aDvvy~~ 74 (153)
T d1pg5a2 61 PFEVINEVDVLYVT 74 (153)
T ss_dssp GGGTGGGCSEEEEE
T ss_pred HHHHhhcCCeEEEe
Confidence 99999999998764
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=81.03 E-value=0.51 Score=41.87 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.7
Q ss_pred cCeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
++||.|.| +|.+|+.++..|.++| +.|.+.++..
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g-------~~vi~~~~~~ 36 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRG-------DVELVLRTRD 36 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT-------TEEEECCCTT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCc-------CEEEEecCch
Confidence 46999999 5999999999999999 7877665443
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.85 E-value=0.66 Score=40.14 Aligned_cols=31 Identities=10% Similarity=0.022 Sum_probs=26.2
Q ss_pred EEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCCCC
Q 014757 66 VVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEETL 103 (419)
Q Consensus 66 IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~ 103 (419)
|-| ++.+|.++|..|+++| .+|.+.+|+.+.
T Consensus 6 VTGas~GIG~aia~~la~~G-------~~Vvi~~r~~~~ 37 (266)
T d1mxha_ 6 ITGGARRIGHSIAVRLHQQG-------FRVVVHYRHSEG 37 (266)
T ss_dssp ETTCSSHHHHHHHHHHHHTT-------CEEEEEESSCHH
T ss_pred EeCCCCHHHHHHHHHHHHCC-------CEEEEEECCchH
Confidence 335 5779999999999999 999999998653
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.82 E-value=0.86 Score=38.78 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=28.9
Q ss_pred cCeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 61 KSKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 61 ~mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
|.||.|||+|.-|...|...++.|.+. ..|.+++++.
T Consensus 1 ~~~viVIG~GpaG~~aA~~aa~~~~~~----~~V~liEk~~ 37 (233)
T d1xdia1 1 VTRIVILGGGPAGYEAALVAATSHPET----TQVTVIDCDG 37 (233)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTT----EEEEEEESSC
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCCC----CEEEEEecCC
Confidence 468999999999999888877766321 6789998753
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.45 E-value=0.7 Score=40.57 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=28.0
Q ss_pred CeEEEEC-cchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVG-SGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIG-aG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
+++.|.| ++.+|.++|..|++.| ++|.+.+|+.
T Consensus 19 K~~lITGas~GIG~aia~~la~~G-------a~Vvi~~~~~ 52 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRG-------CKVIVNYANS 52 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTT-------CEEEEEESSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcC-------CEEEEEeCCc
Confidence 4566666 7999999999999999 8999988875
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=80.35 E-value=0.72 Score=38.40 Aligned_cols=33 Identities=24% Similarity=0.117 Sum_probs=29.8
Q ss_pred CeEEEECcchHHHHHHHHHHHcCCCCCCCCceEEEEecCC
Q 014757 62 SKVTVVGSGNWGSVASKLIASNTLRLSSFHDEVRMWVFEE 101 (419)
Q Consensus 62 mkI~IIGaG~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~ 101 (419)
--|.|||+|.-|...|..+++.| .+|.++++..
T Consensus 4 YDviIIGgGpAGl~aA~~aar~G-------~~V~viE~~~ 36 (229)
T d3lada1 4 FDVIVIGAGPGGYVAAIKSAQLG-------LKTALIEKYK 36 (229)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT-------CCEEEEECCB
T ss_pred CCEEEECcCHHHHHHHHHHHHCC-------CeEEEEeccc
Confidence 35899999999999999999999 8999998754
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=80.02 E-value=10 Score=28.63 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=62.5
Q ss_pred cCeEEEECc-chHHHHHHHHHHHcCCCCCCCCceEEEEecCCCCCCcchHHHHHHhcCcCCccCCCCccCCCeEecCCHH
Q 014757 61 KSKVTVVGS-GNWGSVASKLIASNTLRLSSFHDEVRMWVFEETLPSGEKLTDVINRTNENVKYLPGIKLGKNVVADPDLE 139 (419)
Q Consensus 61 ~mkI~IIGa-G~mG~~lA~~La~~G~~~~~~~~~V~l~~r~~~~~~~~~l~~~i~~~g~~~~~~~~~~l~~~i~~~~~~~ 139 (419)
..||.|-|. |.-|+..+....+.| -+|.. +.+|.+ .|.. ..++.+.++.+
T Consensus 6 ~trVlvQGiTG~~G~~ht~~m~~yG-------T~vVa-GVtPgk------------gG~~---------~~giPVf~sV~ 56 (119)
T d2nu7a1 6 NTKVICQGFTGSQGTFHSEQAIAYG-------TKMVG-GVTPGK------------GGTT---------HLGLPVFNTVR 56 (119)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHT-------CEEEE-EECTTC------------TTEE---------ETTEEEESSHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhC-------CceEE-EEccCC------------CCcc---------cCCCchhhHHH
Confidence 458999995 999999999999999 55432 233433 0110 01356778888
Q ss_pred HHhc--CCCEEEEccCcch-HHHHHHHHhccCCCCcEEEEeecCccc
Q 014757 140 NAVK--DANMLVFVTPHQF-MEGICKRLVGKVNGDVEAISLIKGMEV 183 (419)
Q Consensus 140 ea~~--~aDlVilavp~~~-~~~vl~~l~~~l~~~tiivs~~nGi~~ 183 (419)
|+++ ++|.=++.||+.. .+.+++.+...+ ..++..+-|++.
T Consensus 57 eAv~~~~~~~SvIfVPp~~a~dA~~EAi~agI---~~iV~ITEgIP~ 100 (119)
T d2nu7a1 57 EAVAATGATASVIYVPAPFCKDSILEAIDAGI---KLIITITEGIPT 100 (119)
T ss_dssp HHHHHHCCCEEEECCCGGGHHHHHHHHHHTTC---SEEEECCCCCCH
T ss_pred HHHHHhCCCeEEEeccHHHHHHHHHHHHHCCC---CEEEEecCCCCH
Confidence 7754 7899999999854 455556665543 477888888875
|