BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014758
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 156/306 (50%), Gaps = 65/306 (21%)
Query: 123 QPGPRDAPIQCYIRRERPTG------TYRLYLGLSPGDMSKLLLAARKIRKATSTDFLIS 176
+P P+ I+C I R++ TY L+L G LLA RK +K+ ++++LIS
Sbjct: 24 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGK-KVFLLAGRKRKKSKTSNYLIS 82
Query: 177 LVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVS---LK 233
+ D SR ++Y+GKLRSN +GTKFT+YD+ + P++ S L+
Sbjct: 83 VDPTDLSRGGDSYIGKLRSNLMGTKFTVYDN----------------GVNPQKASSSTLE 126
Query: 234 GSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXX 293
+ +A + YE NVL +GPR+M S I G N E++
Sbjct: 127 SGTLRQELAAVCYETNVLGFKGPRKM---------SVIVPG---------MNMVHERVSI 168
Query: 294 XXXXXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTV 353
L + + + +E L+NK P W++ Q + LNF GRVT
Sbjct: 169 RPRNEHETL--LARWQNKNTESIIE----------LQNKTPVWNDDTQSYVLNFHGRVTQ 216
Query: 354 ASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 413
ASVKNFQ++ +P + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD
Sbjct: 217 ASVKNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFD 267
Query: 414 TKPACE 419
+K ACE
Sbjct: 268 SKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 154/303 (50%), Gaps = 59/303 (19%)
Query: 123 QPGPRDAPIQCYIRRERPTG------TYRLYLGLSPGDMSKLLLAARKIRKATSTDFLIS 176
+P P+ I+C I R++ TY L+L G LLA RK +K+ ++++LIS
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGK-KVFLLAGRKRKKSKTSNYLIS 74
Query: 177 LVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSS 236
+ D SR ++Y+GKLRSN +GTKFT+YD+ A S +L+ +
Sbjct: 75 VDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGT 121
Query: 237 SNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXXXXX 296
+A + YE NVL +GPR+M S I G N E++
Sbjct: 122 LRQELAAVCYETNVLGFKGPRKM---------SVIVPG---------MNMVHERVCIRPR 163
Query: 297 XXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASV 356
L + + + +E L+NK P W++ Q + LNF GRVT ASV
Sbjct: 164 NEHETL--LARWQNKNTESIIE----------LQNKTPVWNDDTQSYVLNFHGRVTQASV 211
Query: 357 KNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKP 416
KNFQ++ +P + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD+K
Sbjct: 212 KNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKL 262
Query: 417 ACE 419
ACE
Sbjct: 263 ACE 265
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 154/303 (50%), Gaps = 59/303 (19%)
Query: 123 QPGPRDAPIQCYIRRERPTG------TYRLYLGLSPGDMSKLLLAARKIRKATSTDFLIS 176
+P P+ I+C I R++ TY L+L G LLA RK +K+ ++++LIS
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGK-KVFLLAGRKRKKSKTSNYLIS 74
Query: 177 LVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSS 236
+ D SR ++Y+GKLRSN +GTKFT+YD+ A S +L+ +
Sbjct: 75 VDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGT 121
Query: 237 SNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXXXXX 296
+A + YE NVL +GPR+M S I G N E++
Sbjct: 122 LRQELAAVCYETNVLGFKGPRKM---------SVIVPG---------MNMVHERVCIRPR 163
Query: 297 XXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASV 356
L + + + +E L+NK P W++ + + LNF GRVT ASV
Sbjct: 164 NEHETL--LARWQNKNTESIIE----------LQNKTPVWNDDTESYVLNFHGRVTQASV 211
Query: 357 KNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKP 416
KNFQ++ +P + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD+K
Sbjct: 212 KNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKL 262
Query: 417 ACE 419
ACE
Sbjct: 263 ACE 265
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 151/301 (50%), Gaps = 59/301 (19%)
Query: 123 QPGPRDAPIQCYIRRERPT---GTYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVG 179
+P P+ ++C + R++ G Y Y + LLA RK +++ + ++LIS+
Sbjct: 31 RPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDP 90
Query: 180 DDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNY 239
+ SR ++GKLRSN LG +FT++D+ +N S R+
Sbjct: 91 TNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ--------------- 135
Query: 240 SVATISYELNVLRTRGPRRMQCTMHSIP-ISAIQEGGTAPTPIEFTNCCEEQIXXXXXXX 298
+A + YE NVL RGPRRM IP +SA E PI N +
Sbjct: 136 ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENE----RVPIRPRNASD---------- 178
Query: 299 XXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKN 358
LV + + +L +E L NK P W++ + LNF+GRVT ASVKN
Sbjct: 179 ----GLLVRWQNKTLESLIE----------LHNKPPVWNDDSGSYTLNFQGRVTQASVKN 224
Query: 359 FQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPAC 418
FQ+V A +P + ++LQFG++ +D FT+DYRYPL ALQAFAI LSSFD K AC
Sbjct: 225 FQIVHADDP---------DYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLAC 275
Query: 419 E 419
E
Sbjct: 276 E 276
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 151 bits (381), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 146/294 (49%), Gaps = 57/294 (19%)
Query: 123 QPGPRDAPIQCYIRRERPT---GTYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVG 179
+P P+ ++C + R++ G Y Y + LLA RK +++ + ++LIS+
Sbjct: 7 RPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDP 66
Query: 180 DDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNY 239
+ SR ++GKLRSN LG +FT++D+ +N S R+
Sbjct: 67 TNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ--------------- 111
Query: 240 SVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXXXXXXXX 299
+A + YE NVL RGPRRM + + SA E PI N +
Sbjct: 112 ELAAVIYETNVLGFRGPRRMTVIIPGM--SAENER----VPIRPRNASD----------- 154
Query: 300 XXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNF 359
LV + + +L +E L NK P W++ + LNF+GRVT ASVKNF
Sbjct: 155 ---GLLVRWQNKTLESLIE----------LHNKPPVWNDDSGSYTLNFQGRVTQASVKNF 201
Query: 360 QLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 413
Q+V A +P + ++LQFG++ +D FT+DYRYPL ALQAFAI LSSFD
Sbjct: 202 QIVHADDP---------DYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246
>pdb|3VA8|A Chain A, Crystal Structure Of Enolase Fg03645.1 (Target Efi-502278)
From Gibberella Zeae Ph-1 Complexed With Magnesium,
Formate And Sulfate
Length = 445
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 62 NMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSW 98
++PP +L D +Q I + W R AS+C +W
Sbjct: 298 HLPPSILQDAVQVILSDHHFWGGLRKSQTLASICATW 334
>pdb|4HPP|A Chain A, Crystal Structure Of Novel Glutamine Synthase Homolog
Length = 443
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 61 ANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVS 120
A PE+ L + + T PA+ VA A + R VT+E+ R Q GL +
Sbjct: 170 AGTEPEMFLPEYGQRQYEVTCRPAQG--VAAADRAVNVREVTREVAR---QMGLRTCFAP 224
Query: 121 LKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPGDMSKL 158
L PG + ++ + G+ LY P D+S+L
Sbjct: 225 LPAPGAVTNGVHLHLSLQHADGSPLLYEPGRPNDLSEL 262
>pdb|3BBO|6 Chain 6, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 104
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 1 MALKNIVKEMRDGIGNISRRGSERR-CSENGKHNMRRRGRSYIAPEG 46
M +++ VK+M + + RRG CS N KH R+ G S A EG
Sbjct: 1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGGFSSFAYEG 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,471,231
Number of Sequences: 62578
Number of extensions: 425245
Number of successful extensions: 622
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 14
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)