Query 014758
Match_columns 419
No_of_seqs 228 out of 363
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 5E-127 1E-131 947.0 27.1 351 1-419 1-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 3.8E-83 8.2E-88 616.8 19.8 239 124-413 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 3.1E-19 6.7E-24 184.4 4.1 78 325-414 485-562 (565)
4 PF12043 DUF3527: Domain of un 98.1 0.00028 6E-09 72.3 19.6 74 323-414 271-344 (346)
5 PF12937 F-box-like: F-box-lik 97.8 6.1E-06 1.3E-10 60.1 0.7 36 60-103 1-36 (47)
6 PF00646 F-box: F-box domain; 97.7 9E-06 1.9E-10 58.8 -0.3 39 59-105 2-40 (48)
7 PLN03215 ascorbic acid mannose 97.4 8.1E-05 1.8E-09 77.0 1.9 41 58-105 2-42 (373)
8 smart00256 FBOX A Receptor for 97.2 6.2E-05 1.3E-09 52.0 -0.4 34 63-104 1-34 (41)
9 KOG2997 F-box protein FBX9 [Ge 89.0 0.18 3.9E-06 51.8 1.2 43 57-102 101-146 (366)
10 KOG2120 SCF ubiquitin ligase, 61.2 2.1 4.6E-05 44.4 -0.8 67 60-134 98-167 (419)
11 PF04525 Tub_2: Tubby C 2; In 29.7 1.5E+02 0.0033 27.4 6.2 78 129-207 62-144 (187)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=5.4e-127 Score=947.01 Aligned_cols=351 Identities=50% Similarity=0.804 Sum_probs=303.1
Q ss_pred CchhhHHHHhccccccccccccccccccCCCcccccCCccccCCCCCCCCcccccccCcCCCCCHHHHHHHHHHHHhcCC
Q 014758 1 MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGSSSSSKIIVEQSQWANMPPELLLDIIQRIEASQT 80 (419)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~p~ell~~i~~r~e~se~ 80 (419)
|+++++++++++.. +++++..+ +|++. +...++.... .....+.|++||||||+|+|+|+|++|+
T Consensus 1 ~~~~~~~~~~~~~~------~~~~~~~~------~~~~~-~~~~~~~~~~--s~~~~~~~~~l~~~~L~d~~~r~eese~ 65 (355)
T KOG2502|consen 1 MGEDGPVRDPEDKS------SFRAPQGS------GTKGP-EDKSEDSGFP--SPSDQSLWAALPPELLSDVLKRDEESED 65 (355)
T ss_pred CCccCccCCCCccc------chhccccc------ccccC-CCccCCcCCc--cccccchhhcCCHhHHHHHhhhcccccc
Confidence 78889999988776 44443321 12211 1112221111 1112289999999999999999999999
Q ss_pred CCCCccceeeccccChhHHHHhHhhhcCccccCcccccccccCCCCCCCceEEEEEEecCCceEEEEeecCC----CCCC
Q 014758 81 SWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP----GDMS 156 (419)
Q Consensus 81 ~wp~r~~vvaca~vc~~wr~~~~eiv~~pe~~g~~tfp~sLkqPgPrd~~iqC~I~RdK~~~tY~LYL~l~~----~e~g 156 (419)
.||+|++||+||+||+.||++++|||++||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.+ .|++
T Consensus 66 ~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~ 145 (355)
T KOG2502|consen 66 TWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNK 145 (355)
T ss_pred ccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877 4779
Q ss_pred ceEEeeeeccccCCeeEEEeccCCCCccCCcceeeeeeeceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCC
Q 014758 157 KLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSS 236 (419)
Q Consensus 157 KfLLAARKrrr~~tSnYiISld~~dlSr~s~~yVGKLRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~ 236 (419)
||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|.. .+|.++ ++|+
T Consensus 146 kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~----------~~r~~~------~~~~ 209 (355)
T KOG2502|consen 146 KFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVN----------PSRRFN------KVPS 209 (355)
T ss_pred eeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCC----------cccccc------cCCc
Confidence 999999999999999999999999999999999999999999999999999732 234443 5899
Q ss_pred CceeEEEEEEeecccCCCCCeeeEEeeccccchhhcCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 014758 237 SNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGP 316 (419)
Q Consensus 237 ~~~ela~VsYe~NVLg~rGPRrM~~im~~IP~s~i~~gg~~p~q~~~~~~~~e~~~~~~~~~~k~k~~~~~~~~~~~~~~ 316 (419)
++|+||+|+||+||||+||||||+|+||+||.++ ++|++|.|.+..+.. .+ .+.
T Consensus 210 ~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~-----~l----~r~--------------- 263 (355)
T KOG2502|consen 210 GRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS-----LL----FRS--------------- 263 (355)
T ss_pred ccceeeEEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc-----hh----hhc---------------
Confidence 9999999999999999999999999999999877 899998886532210 11 010
Q ss_pred CCCCCCCCCceEeccCCCcccccccceEeccCCeeeccccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEcc
Q 014758 317 LESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYR 396 (419)
Q Consensus 317 ~~~~~~~~~~~~L~nK~P~w~e~~q~y~LnF~GRvt~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~~d~F~mD~~ 396 (419)
.++.++++++|+||+|+|||++||||||||||||+||||||||||. .++++|||||||||||+|||||+
T Consensus 264 --~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~---------~~p~~iiLQFGrV~kD~FTmDYr 332 (355)
T KOG2502|consen 264 --QNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA---------LDPEYIILQFGRVGKDVFTMDYR 332 (355)
T ss_pred --cccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc---------CCCCEEEEEeeeeccceeeeccc
Confidence 1224689999999999999999999999999999999999999998 56799999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCcccCC
Q 014758 397 YPLSALQAFAICLSSFDTKPACE 419 (419)
Q Consensus 397 yPlS~~QAFaI~LssfdtKlACe 419 (419)
|||||||||||||||||+|||||
T Consensus 333 YPlSa~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 333 YPLSAFQAFAICLSSFDTKLACE 355 (355)
T ss_pred CccHHHHHHHHHHHhccccccCC
Confidence 99999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=3.8e-83 Score=616.82 Aligned_cols=239 Identities=54% Similarity=0.906 Sum_probs=182.8
Q ss_pred CCCCCCceEEEEEEecCCc------eEEEEeecCCCCCCceEEeeeeccccCCeeEEEeccCCCCccCCcceeeeeeece
Q 014758 124 PGPRDAPIQCYIRRERPTG------TYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNF 197 (419)
Q Consensus 124 PgPrd~~iqC~I~RdK~~~------tY~LYL~l~~~e~gKfLLAARKrrr~~tSnYiISld~~dlSr~s~~yVGKLRSNF 197 (419)
|||+|++|||+|+|||+|+ +|+|||+ .++++|||||||++++++||||||++++|+||++++|||||||||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~---~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf 77 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLE---GENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNF 77 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEE---STTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-T
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccc---cCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccc
Confidence 8999999999999999987 4566664 478899999999999999999999999999999999999999999
Q ss_pred eecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccccchhhcCCCCC
Q 014758 198 LGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTA 277 (419)
Q Consensus 198 lGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~VsYe~NVLg~rGPRrM~~im~~IP~s~i~~gg~~ 277 (419)
+||+|||||+|++++.+. ..+|..+..++|||+|+||+||||+||||||+|+||.|+....++++..
T Consensus 78 ~GT~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~ 144 (246)
T PF01167_consen 78 LGTEFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRV 144 (246)
T ss_dssp TSSEEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B-
T ss_pred ceeEEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceee
Confidence 999999999997665432 1256677889999999999999999999999999999987766666555
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCC-CcccccCCCCCCCCCCCCCCCCceEeccCCCcccccccceEeccCCeeecccc
Q 014758 278 PTPIEFTNCCEEQIPSSPSPVSKGKK-PLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASV 356 (419)
Q Consensus 278 p~q~~~~~~~~e~~~~~~~~~~k~k~-~~~~~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~~q~y~LnF~GRvt~aSV 356 (419)
|.+.. ...++ ...++ .....++.++|+||.|+||++++||+|||+||||+|||
T Consensus 145 ~~~p~----------------~~~~~~~~~~~----------~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~Sv 198 (246)
T PF01167_consen 145 PFQPL----------------NQEKDSLLSRF----------QNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASV 198 (246)
T ss_dssp ----S----------------S-CCCSHHHHH----------HCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BT
T ss_pred eeecc----------------ccccccccccc----------cccCCcceEEEecCCCcEeccCCeEEeccCCeEecccc
Confidence 43310 00111 11111 12246789999999999999999999999999999999
Q ss_pred ceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHHHHHHHHHHcCC
Q 014758 357 KNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 413 (419)
Q Consensus 357 KNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~Lssfd 413 (419)
||||||++ ++++++|||||||++|+|+|||+|||||+|||||||||||
T Consensus 199 KNFql~~~---------~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 199 KNFQLVHP---------SDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp TEEEEEBT---------TBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred ceeEEEcc---------CCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 99999998 7889999999999999999999999999999999999997
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.76 E-value=3.1e-19 Score=184.40 Aligned_cols=78 Identities=41% Similarity=0.735 Sum_probs=72.0
Q ss_pred CceEeccCCCcccccccceEeccCCeeeccccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHHHH
Q 014758 325 DPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQA 404 (419)
Q Consensus 325 ~~~~L~nK~P~w~e~~q~y~LnF~GRvt~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~~d~F~mD~~yPlS~~QA 404 (419)
.+.++.||+|.|||+.|-|+|||.||||+.|.||||+-.. .+-|||||+|+.+.|++||+||||+.||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~------------gkQvmqFgRidg~aytldfqypfSa~Qa 552 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF------------GKQVMQFGRIDGPAYTLDFQYPFSAGQA 552 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec------------chhhheeccccCCcccCCCCCchHHHHH
Confidence 3459999999999999999999999999999999999865 4569999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 014758 405 FAICLSSFDT 414 (419)
Q Consensus 405 FaI~Lssfdt 414 (419)
||+||++.--
T Consensus 553 Favalanvtq 562 (565)
T KOG2503|consen 553 FAVALANVTQ 562 (565)
T ss_pred HHHHHhhhhh
Confidence 9999998643
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=98.12 E-value=0.00028 Score=72.28 Aligned_cols=74 Identities=20% Similarity=0.400 Sum_probs=55.1
Q ss_pred CCCceEeccCCCcccccccceEeccCCeeeccccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHH
Q 014758 323 AGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSAL 402 (419)
Q Consensus 323 ~~~~~~L~nK~P~w~e~~q~y~LnF~GRvt~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~~d~F~mD~~yPlS~~ 402 (419)
--.+.||.|.. +.+-..+.+.+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||++
T Consensus 271 gC~L~VL~n~~----------~~~~~~~~~~~~~~~feLf~QG--------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~L 332 (346)
T PF12043_consen 271 GCPLRVLSNQS----------QNSKKSSSSKESSHPFELFVQG--------SKEEDPAFSMVNVKEGLYSVEFHSSLSPL 332 (346)
T ss_pred CCCeEEeCCCC----------ccccccccccccCCceeeeecc--------cccCCCceEEEEccCCeEEEEecCcchHH
Confidence 34677888753 1222355566677778887551 22333899999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 014758 403 QAFAICLSSFDT 414 (419)
Q Consensus 403 QAFaI~Lssfdt 414 (419)
|||+||++-.+.
T Consensus 333 QAFSiciA~lh~ 344 (346)
T PF12043_consen 333 QAFSICIAVLHS 344 (346)
T ss_pred HHHHHhheeeec
Confidence 999999987654
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.80 E-value=6.1e-06 Score=60.09 Aligned_cols=36 Identities=28% Similarity=0.754 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014758 60 WANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (419)
Q Consensus 60 w~~~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (419)
|..||+|+|.+|+..++.. ++..|+.|||.|++++.
T Consensus 1 i~~LP~Eil~~If~~L~~~--------dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPR--------DLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HH--------HHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHHC
Confidence 7899999999999888443 68999999999999873
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.65 E-value=9e-06 Score=58.84 Aligned_cols=39 Identities=21% Similarity=0.535 Sum_probs=31.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHhh
Q 014758 59 QWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEI 105 (419)
Q Consensus 59 ~w~~~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ei 105 (419)
.|.+||+|++.+|+.+++-.+ +++|+.||+.|++++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~--------~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKD--------LLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHH--------HHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHH--------HHHHHHHhhHHHHHHcCC
Confidence 488999999999999997654 999999999999988654
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.35 E-value=8.1e-05 Score=76.96 Aligned_cols=41 Identities=29% Similarity=0.680 Sum_probs=37.4
Q ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHhh
Q 014758 58 SQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEI 105 (419)
Q Consensus 58 ~~w~~~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ei 105 (419)
..|+.||+|||+.|..|+ |++-|++--++||++||..+...
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccc
Confidence 359999999999999999 99999999999999999977643
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.22 E-value=6.2e-05 Score=52.00 Aligned_cols=34 Identities=26% Similarity=0.752 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh
Q 014758 63 MPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (419)
Q Consensus 63 ~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (419)
||+|++.+|+.++ +. +++.+|+.||+.||.++.+
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999 44 7889999999999997743
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=88.99 E-value=0.18 Score=51.84 Aligned_cols=43 Identities=21% Similarity=0.398 Sum_probs=32.9
Q ss_pred cCcCCC---CCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHh
Q 014758 57 QSQWAN---MPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVT 102 (419)
Q Consensus 57 ~~~w~~---~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~ 102 (419)
|++|-+ ||+|+|..|+++|=.+- =.-++.+.||+|||.|+-.+
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHH
Confidence 778866 99999999999995332 12356789999999877544
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=61.20 E-value=2.1 Score=44.37 Aligned_cols=67 Identities=21% Similarity=0.424 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh--hhcCccccCcccccccccCCCCCCC-ceEEE
Q 014758 60 WANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE--IIRTPEQCGLLSFPVSLKQPGPRDA-PIQCY 134 (419)
Q Consensus 60 w~~~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e--iv~~pe~~g~~tfp~sLkqPgPrd~-~iqC~ 134 (419)
|..||.|+|.+|.. |=..++...-|+||++|-.++.+ +-.+.+.-|+---|.+|-|=.-|+. .++|-
T Consensus 98 ~~slpDEill~IFs--------~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla 167 (419)
T KOG2120|consen 98 WDSLPDEILLGIFS--------CLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA 167 (419)
T ss_pred cccCCHHHHHHHHH--------hccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence 99999999999996 44667788889999999887754 3344566666556766665555653 34553
No 11
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=29.66 E-value=1.5e+02 Score=27.37 Aligned_cols=78 Identities=24% Similarity=0.280 Sum_probs=30.9
Q ss_pred CceEEEEEEecCCc--eEEEEeecCCCCCCceEEeeeec-cccCCeeEEEeccCC-CC-ccCCcceeeeeeeceeecEEE
Q 014758 129 APIQCYIRRERPTG--TYRLYLGLSPGDMSKLLLAARKI-RKATSTDFLISLVGD-DF-SRTSNTYVGKLRSNFLGTKFT 203 (419)
Q Consensus 129 ~~iqC~I~RdK~~~--tY~LYL~l~~~e~gKfLLAARKr-rr~~tSnYiISld~~-dl-Sr~s~~yVGKLRSNFlGTkFt 203 (419)
|..-..|+|..-+. +|..|.+-+ .+..+.+...||. .-...++..+.+.+. .. .-.+...-=+++-||++-.|+
T Consensus 62 G~~L~~i~~k~~~l~~~w~i~~~~~-~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~ 140 (187)
T PF04525_consen 62 GNPLFTIRRKLFSLRPTWEIYRGGG-SEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFT 140 (187)
T ss_dssp S-EEEEEE--------EEEEEETT----GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--E
T ss_pred CCEEEEEEeeecccceEEEEEECCC-CccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEE
Confidence 55557887754333 999999632 1223567777765 112222333333221 11 011222334689999999999
Q ss_pred EecC
Q 014758 204 IYDS 207 (419)
Q Consensus 204 IYD~ 207 (419)
|||.
T Consensus 141 I~~~ 144 (187)
T PF04525_consen 141 IYDS 144 (187)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9973
Done!