Query 014758
Match_columns 419
No_of_seqs 228 out of 363
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 17:18:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 2.6E-89 8.9E-94 667.9 22.4 242 121-419 29-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.3E-86 4.3E-91 639.9 22.3 236 121-413 5-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.1 5.4E-07 1.8E-11 65.9 1.2 40 56-103 5-44 (53)
4 2ast_B S-phase kinase-associat 96.9 0.00019 6.4E-09 67.6 1.2 41 55-103 4-44 (336)
5 2e31_A FBS1, F-box only protei 96.8 0.00032 1.1E-08 69.1 1.6 39 57-103 48-87 (297)
6 2p1m_B Transport inhibitor res 96.6 0.00042 1.4E-08 70.1 0.7 42 56-104 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 94.7 0.0077 2.6E-07 58.2 1.0 41 55-103 14-54 (445)
8 3v7d_B Cell division control p 94.5 0.0041 1.4E-07 60.0 -1.3 42 55-104 10-51 (464)
9 3l2o_B F-box only protein 4; s 92.8 0.013 4.5E-07 58.1 -1.2 38 59-104 4-41 (312)
10 3ogk_B Coronatine-insensitive 92.1 0.029 9.9E-07 56.7 0.2 37 60-103 13-49 (592)
11 1p22_A F-BOX/WD-repeat protein 91.8 0.017 5.9E-07 55.8 -1.8 42 55-104 6-51 (435)
12 1zxu_A AT5G01750 protein; PFAM 23.5 1.7E+02 0.0056 26.4 6.7 11 239-249 166-176 (217)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=2.6e-89 Score=667.88 Aligned_cols=242 Identities=40% Similarity=0.682 Sum_probs=184.2
Q ss_pred ccCCCCCCCceEEEEEEecCCc------eEEEEeecCCCCCCceEEeeeeccccCCeeEEEeccCCCCccCCcceeeeee
Q 014758 121 LKQPGPRDAPIQCYIRRERPTG------TYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLR 194 (419)
Q Consensus 121 LkqPgPrd~~iqC~I~RdK~~~------tY~LYL~l~~~e~gKfLLAARKrrr~~tSnYiISld~~dlSr~s~~yVGKLR 194 (419)
|+||+|+|+++||+|+|||+|+ +|||||+ .++++|||||||+|+++|+||+||+|++||||++++||||||
T Consensus 29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~---~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGKLr 105 (276)
T 2fim_A 29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD---TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLR 105 (276)
T ss_dssp GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC---SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEEEE
T ss_pred hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe---CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEEEE
Confidence 9999999999999999999984 9999996 477899999999999999999999999999999999999999
Q ss_pred eceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccccchhhcCC
Q 014758 195 SNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEG 274 (419)
Q Consensus 195 SNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~VsYe~NVLg~rGPRrM~~im~~IP~s~i~~g 274 (419)
|||+||+|||||+|++.+. ..+|.++.+|+|||+|+||+||||++|||+|+|+||.+ . +.|
T Consensus 106 SNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~---~-~~~ 166 (276)
T 2fim_A 106 SNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S-AEN 166 (276)
T ss_dssp ECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECB---C-TTS
T ss_pred EccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c-cCC
Confidence 9999999999999954321 13566778899999999999999999999999998653 1 223
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceEeccCCCcccccccceEeccCCeeecc
Q 014758 275 GTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVA 354 (419)
Q Consensus 275 g~~p~q~~~~~~~~e~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~~q~y~LnF~GRvt~a 354 (419)
+..|.+ +.. .......++. +...+++++|+||+|+|||++|||||||+||||+|
T Consensus 167 ~~~~~~------------p~~----~~~~ll~~~~----------~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~a 220 (276)
T 2fim_A 167 ERVPIR------------PRN----ASDGLLVRWQ----------NKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 220 (276)
T ss_dssp CBCCCC------------CSS----TTCSHHHHHH----------HTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSC
T ss_pred CEeccc------------CCC----cccccchhhh----------ccCCcceEeeeccCCcccccCCEEEEecCCeeecc
Confidence 322221 110 0000111111 22457899999999999999999999999999999
Q ss_pred ccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHHHHHHHHHHcCCCcccCC
Q 014758 355 SVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE 419 (419)
Q Consensus 355 SVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssfdtKlACe 419 (419)
||||||||++ +|+++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 221 SvKNFQLv~~---------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 221 SVKNFQIVHA---------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp CTTCEEEECT---------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred ccceEEEEec---------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 9999999998 6778999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.3e-86 Score=639.89 Aligned_cols=236 Identities=39% Similarity=0.675 Sum_probs=189.7
Q ss_pred ccCCCCCCCceEEEEEEecCCc------eEEEEeecCCCCCCceEEeeeeccccCCeeEEEeccCCCCccCCcceeeeee
Q 014758 121 LKQPGPRDAPIQCYIRRERPTG------TYRLYLGLSPGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLR 194 (419)
Q Consensus 121 LkqPgPrd~~iqC~I~RdK~~~------tY~LYL~l~~~e~gKfLLAARKrrr~~tSnYiISld~~dlSr~s~~yVGKLR 194 (419)
|+||+|+|++|||+|+|||+|+ +||||++ .++++|||||||+|+++|||||||+|++||||++++||||||
T Consensus 5 l~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~---~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGKLr 81 (246)
T 3c5n_A 5 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD---TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLR 81 (246)
T ss_dssp GGSCCCTTCEEEEEEEECC------CCCEEEEEES---SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEEEE
T ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe---CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEEEE
Confidence 9999999999999999999985 8999996 456789999999999999999999999999999999999999
Q ss_pred eceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccccchhhcCC
Q 014758 195 SNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEG 274 (419)
Q Consensus 195 SNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~VsYe~NVLg~rGPRrM~~im~~IP~s~i~~g 274 (419)
|||+||+|+|||+|++++. ..+|.++.+|+|||+|+||+||||++|||+|+|+||.+ . +.|
T Consensus 82 sNf~Gt~F~iyD~g~~p~~---------------~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~---~-~~~ 142 (246)
T 3c5n_A 82 SNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S-AEN 142 (246)
T ss_dssp ECSSSSEEEEECSCBCGGG---------------CTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECB---C-TTS
T ss_pred EccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c-cCC
Confidence 9999999999999964321 13466778899999999999999999999999998653 1 223
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceEeccCCCcccccccceEeccCCeeecc
Q 014758 275 GTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVA 354 (419)
Q Consensus 275 g~~p~q~~~~~~~~e~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~~q~y~LnF~GRvt~a 354 (419)
+..|.+ +.. .......++. +...+++++|+||+|+|||++|||||||+||||+|
T Consensus 143 ~~~~~~------------p~~----~~~~~~~~~~----------~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~a 196 (246)
T 3c5n_A 143 ERVPIR------------PRN----ASDGLLVRWQ----------NKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 196 (246)
T ss_dssp CBCCCC------------CSS----TTSSHHHHHH----------HTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBC
T ss_pred CEeecc------------CCC----ccccchhhhh----------ccCCcceEEEeccCCcccccCCEEEEecCCeeecc
Confidence 333221 100 0000111111 22457899999999999999999999999999999
Q ss_pred ccceeEEEeccCCCCCCCcccCCeEEEEeeeccCCeEEEEccCCCCHHHHHHHHHHcCC
Q 014758 355 SVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 413 (419)
Q Consensus 355 SVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~Lssfd 413 (419)
||||||||++ +|+++||||||||++|+|||||+|||||||||||||||||
T Consensus 197 SvKNFqLv~~---------~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 197 SVKNFQIVHA---------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp CTTCEEEEBT---------TBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred ccceEEEEec---------CCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 9999999998 6788999999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.12 E-value=5.4e-07 Score=65.87 Aligned_cols=40 Identities=28% Similarity=0.643 Sum_probs=32.6
Q ss_pred ccCcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014758 56 EQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (419)
Q Consensus 56 ~~~~w~~~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (419)
++..|+.||+|+|..|+.++ | .++++.||.|||.|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999 3 4678999999999999764
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.95 E-value=0.00019 Score=67.58 Aligned_cols=41 Identities=27% Similarity=0.636 Sum_probs=33.6
Q ss_pred cccCcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014758 55 VEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (419)
Q Consensus 55 ~~~~~w~~~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (419)
.++..|+.||+|+|..|+..+ |.+ +++.||.||++|++++.
T Consensus 4 ~~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 4 FPGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp ---CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred cccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence 346789999999999999999 333 68999999999999873
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.81 E-value=0.00032 Score=69.13 Aligned_cols=39 Identities=33% Similarity=0.772 Sum_probs=33.7
Q ss_pred cCcCCCCCHHHHHHHHHHHHhcCCCCCCcccee-eccccChhHHHHhH
Q 014758 57 QSQWANMPPELLLDIIQRIEASQTSWPARRDVV-ACASVCKSWRAVTK 103 (419)
Q Consensus 57 ~~~w~~~p~ell~~i~~r~e~se~~wp~r~~vv-aca~vc~~wr~~~~ 103 (419)
....+.||+|||.+|+.|| |.+ +++ .|+.|||.||.++.
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhc
Confidence 3468899999999999999 764 588 99999999999764
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.59 E-value=0.00042 Score=70.09 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=30.8
Q ss_pred ccCcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh
Q 014758 56 EQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (419)
Q Consensus 56 ~~~~w~~~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (419)
+...|+.||+|+|..|+.++ |..+++++|+.|||+|+.+...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999 7778899999999999998433
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.70 E-value=0.0077 Score=58.20 Aligned_cols=41 Identities=24% Similarity=0.589 Sum_probs=34.6
Q ss_pred cccCcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014758 55 VEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (419)
Q Consensus 55 ~~~~~w~~~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (419)
....-++.||+|||..|+..++. +++..||.|||.|++++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~--------~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCCH--------HHHHHHHHHhHHHHhhcC
Confidence 34566899999999999999943 558999999999998774
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.54 E-value=0.0041 Score=60.03 Aligned_cols=42 Identities=17% Similarity=0.472 Sum_probs=35.6
Q ss_pred cccCcCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh
Q 014758 55 VEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (419)
Q Consensus 55 ~~~~~w~~~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (419)
.+..-++.||+|||..|+..| |. ++++.|+.|||.|++++.+
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 455668899999999999999 43 4689999999999998754
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.82 E-value=0.013 Score=58.13 Aligned_cols=38 Identities=16% Similarity=0.388 Sum_probs=32.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh
Q 014758 59 QWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (419)
Q Consensus 59 ~w~~~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (419)
-|.+||.|++..|+.-|+. +++..||.|||.||.++.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred hhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 4788999999999999943 4589999999999998854
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.07 E-value=0.029 Score=56.68 Aligned_cols=37 Identities=14% Similarity=0.380 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhH
Q 014758 60 WANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTK 103 (419)
Q Consensus 60 w~~~p~ell~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 103 (419)
.+.||+|+|..|+..+ +..+++++|+-|||+|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 4579999999999999 456788999999999999853
No 11
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=91.76 E-value=0.017 Score=55.82 Aligned_cols=42 Identities=24% Similarity=0.566 Sum_probs=34.5
Q ss_pred cccCcCCCCCHH----HHHHHHHHHHhcCCCCCCccceeeccccChhHHHHhHh
Q 014758 55 VEQSQWANMPPE----LLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKE 104 (419)
Q Consensus 55 ~~~~~w~~~p~e----ll~~i~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 104 (419)
.+.+-.+.||+| ||..|+..|+. +++..||.|||.|++++.+
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 455567889999 99999999954 5688999999999988753
No 12
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=23.50 E-value=1.7e+02 Score=26.39 Aligned_cols=11 Identities=18% Similarity=0.066 Sum_probs=5.9
Q ss_pred eeEEEEEEeec
Q 014758 239 YSVATISYELN 249 (419)
Q Consensus 239 ~ela~VsYe~N 249 (419)
..||.|+=+.+
T Consensus 166 ~~Va~I~kk~~ 176 (217)
T 1zxu_A 166 AIVAQMHRKHT 176 (217)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEEEeeee
Confidence 45777776643
Done!