BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014759
         (419 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
           Dipeptidase Mutant D285n Complexed With
           Beta-Aspartylhistidine
          Length = 390

 Score = 29.3 bits (64), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 100 AGVILATGF----VHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQ 155
           +G IL  GF    VH++ GG EA      PE   S+    G  ++V  L T   D + ++
Sbjct: 56  SGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGT---DSI-SR 111

Query: 156 YYERKQGLTRATEEQG 171
           + E     TRA  E+G
Sbjct: 112 HPESLLAKTRALNEEG 127


>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
           Mutant Y137f
 pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
           Mutant Y137f
          Length = 390

 Score = 29.3 bits (64), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 100 AGVILATGF----VHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQ 155
           +G IL  GF    VH++ GG EA      PE   S+    G  ++V  L T   D + ++
Sbjct: 56  SGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGT---DSI-SR 111

Query: 156 YYERKQGLTRATEEQG 171
           + E     TRA  E+G
Sbjct: 112 HPESLLAKTRALNEEG 127


>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
           Dipeptidase Mutant D285n Complexed With
           Beta-Aspartylhistidine
          Length = 390

 Score = 29.3 bits (64), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 100 AGVILATGF----VHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQ 155
           +G IL  GF    VH++ GG EA      PE   S+    G  ++V  L T   D + ++
Sbjct: 56  SGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGT---DSI-SR 111

Query: 156 YYERKQGLTRATEEQG 171
           + E     TRA  E+G
Sbjct: 112 HPESLLAKTRALNEEG 127


>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
 pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
 pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
           Escherichia Coli Complexed With Aspartate
 pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
           Escherichia Coli Complexed With Aspartate
 pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
 pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
 pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
 pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
 pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
 pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
          Length = 390

 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 100 AGVILATGF----VHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQ 155
           +G IL  GF    VH++ GG EA      PE   S+    G  ++V  L T   D + ++
Sbjct: 56  SGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGT---DSI-SR 111

Query: 156 YYERKQGLTRATEEQG 171
           + E     TRA  E+G
Sbjct: 112 HPESLLAKTRALNEEG 127


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,778,966
Number of Sequences: 62578
Number of extensions: 331000
Number of successful extensions: 656
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 4
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)