Query 014759
Match_columns 419
No_of_seqs 216 out of 1384
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 17:19:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 18.0 97 0.0033 20.9 2.9 18 65-82 21-38 (44)
2 2zy9_A Mg2+ transporter MGTE; 15.6 72 0.0025 32.2 2.6 22 62-83 418-439 (473)
3 2l2t_A Receptor tyrosine-prote 13.1 2.9E+02 0.0098 18.6 4.2 18 65-82 20-37 (44)
4 2jwa_A Receptor tyrosine-prote 12.9 2.4E+02 0.0081 19.0 3.7 18 65-82 21-38 (44)
5 1vf5_F Protein PET M; photosyn 9.0 3.4E+02 0.012 17.4 3.2 25 326-350 5-29 (35)
6 2lat_A Dolichyl-diphosphooligo 8.3 3.4E+02 0.012 17.6 3.1 18 401-418 8-25 (37)
7 3j1r_A Archaeal adhesion filam 8.0 3.7E+02 0.013 15.9 2.8 17 361-377 8-24 (26)
8 2zy9_A Mg2+ transporter MGTE; 7.9 1.2E+03 0.042 22.9 8.8 37 275-316 357-393 (473)
9 1q90_M Cytochrome B6F complex 7.5 4.2E+02 0.014 17.4 3.2 24 326-349 6-29 (39)
10 2k21_A Potassium voltage-gated 7.3 5.4E+02 0.019 21.4 4.7 35 130-164 49-83 (138)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=17.97 E-value=97 Score=20.90 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=7.6
Q ss_pred HHHHHHHHhhHhhhcccc
Q 014759 65 ILISGIVGVAIPLIGKHR 82 (419)
Q Consensus 65 Il~~S~lg~~lPl~~~r~ 82 (419)
+++..++...+=++.||.
T Consensus 21 v~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333334444444455543
No 2
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=15.57 E-value=72 Score=32.18 Aligned_cols=22 Identities=14% Similarity=0.468 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhHhhhccccc
Q 014759 62 IASILISGIVGVAIPLIGKHRR 83 (419)
Q Consensus 62 l~~Il~~S~lg~~lPl~~~r~~ 83 (419)
++.+++++++|+++|++++|+.
T Consensus 418 ~~~~~~a~~~g~~~p~~~~~~~ 439 (473)
T 2zy9_A 418 VLIVFFANLVGAMLPFLLRRLG 439 (473)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 3446667777888888777654
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=13.05 E-value=2.9e+02 Score=18.59 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=8.3
Q ss_pred HHHHHHHHhhHhhhcccc
Q 014759 65 ILISGIVGVAIPLIGKHR 82 (419)
Q Consensus 65 Il~~S~lg~~lPl~~~r~ 82 (419)
+++..+++..+=++.||.
T Consensus 20 v~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 444444444444555543
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=12.89 E-value=2.4e+02 Score=19.03 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=7.8
Q ss_pred HHHHHHHHhhHhhhcccc
Q 014759 65 ILISGIVGVAIPLIGKHR 82 (419)
Q Consensus 65 Il~~S~lg~~lPl~~~r~ 82 (419)
+++.-+++..+-++.||+
T Consensus 21 vll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheehh
Confidence 333333344444555554
No 5
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=8.99 E-value=3.4e+02 Score=17.38 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhcc
Q 014759 326 ATLMACFFALTTPVGISIGTAAASV 350 (419)
Q Consensus 326 ~~~~~~~fsl~tPlG~~iG~~i~~~ 350 (419)
++....+....+++|.++|..+...
T Consensus 5 If~~A~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 5 MLYAALLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhee
Confidence 3445566677889999999887654
No 6
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=8.34 E-value=3.4e+02 Score=17.58 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 014759 401 SYLMLFLGAGLMSLLAIW 418 (419)
Q Consensus 401 ~~~~~~~G~~~ma~l~~w 418 (419)
..++.++|...|.++-.+
T Consensus 8 ~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 568889999999877543
No 7
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=7.99 E-value=3.7e+02 Score=15.94 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014759 361 VEGILDSMSAGILVYMA 377 (419)
Q Consensus 361 ~~~il~alsaG~flYv~ 377 (419)
+.-|+.+++++.++|.=
T Consensus 8 ~lLIviav~aaVllylW 24 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34577888999999963
No 8
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=7.85 E-value=1.2e+03 Score=22.85 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=22.3
Q ss_pred HHHhHHHHHhhhcccCccchHHHHHHHHhhhhHHHHHHHHHH
Q 014759 275 VSHSIIIGISLGVSHSPCTIRPLIAALSFHQFFEGFALGGCI 316 (419)
Q Consensus 275 ~~HS~~eGlalG~~~~~~~~~~l~~Ai~~Hk~~e~~aLg~~l 316 (419)
+.--++.|++.|--+... ..-+++-+...|+.+|..+
T Consensus 357 ~~t~~ir~la~~~~~~~~-----~~~~~~ke~~~~~~~g~~~ 393 (473)
T 2zy9_A 357 SATLIIRALATRDLDLRD-----WRRVFLKEMGVGLLLGLTL 393 (473)
T ss_dssp HHHHHHHHHHTTSSCGGG-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 456677888888533221 2445667777777766544
No 9
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=7.46 E-value=4.2e+02 Score=17.37 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhc
Q 014759 326 ATLMACFFALTTPVGISIGTAAAS 349 (419)
Q Consensus 326 ~~~~~~~fsl~tPlG~~iG~~i~~ 349 (419)
++..+.+.-..+++|.++|..+..
T Consensus 6 If~~A~i~~~L~LvGla~Gf~LLk 29 (39)
T 1q90_M 6 IAGTALTMVGMTLVGLAIGFVLLR 29 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666778889988887654
No 10
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=7.33 E-value=5.4e+02 Score=21.36 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhHhhhhccCCc
Q 014759 130 SKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLT 164 (419)
Q Consensus 130 ~~yP~a~li~~~gf~lvlliE~~~~~~~~~~~~~~ 164 (419)
+++-.-++++++|||-++++-.++.....++.++.
T Consensus 49 ~~~~ylYIL~vmgffgff~~GImLsYiRSKk~E~s 83 (138)
T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS 83 (138)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhHhhhcccc
Confidence 44667889999999999999887776655555443
Done!