Query 014759
Match_columns 419
No_of_seqs 216 out of 1384
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 17:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014759.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014759hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 25.7 31 0.0022 28.2 4.3 51 57-107 115-168 (173)
2 d3d31c1 f.58.1.1 (C:13-260) Su 12.0 2.4E+02 0.017 22.7 7.1 28 361-388 133-160 (248)
3 d2r6gf2 f.58.1.1 (F:261-504) M 8.0 4.2E+02 0.031 21.1 7.3 23 366-388 119-141 (244)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 7.1 1.8E+02 0.013 16.9 2.7 17 402-418 6-22 (34)
5 d1r3jc_ f.14.1.1 (C:) Potassiu 5.0 4E+02 0.029 18.5 4.6 16 398-413 68-83 (103)
6 d1kqfb2 f.23.22.1 (B:246-290) 4.6 3.2E+02 0.023 16.8 3.1 18 361-378 17-34 (45)
7 d2axth1 f.23.33.1 (H:2-65) Pho 3.8 3.1E+02 0.022 18.1 2.6 24 129-152 24-48 (64)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 3.8 1.3E+02 0.0097 17.7 0.6 10 105-114 10-19 (36)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 2.8 4.9E+02 0.036 14.2 2.9 12 363-374 13-24 (32)
10 d1u19a_ f.13.1.2 (A:) Rhodopsi 2.4 7.8E+02 0.057 19.5 4.7 22 57-78 39-60 (348)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=25.72 E-value=31 Score=28.21 Aligned_cols=51 Identities=8% Similarity=0.166 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHhhHhhhccccccccC---CchhhHHhhhhccchhhhhh
Q 014759 57 LKFVAIASILISGIVGVAIPLIGKHRRFLKT---DGSLFVATKAFAAGVILATG 107 (419)
Q Consensus 57 lKi~al~~Il~~S~lg~~lPl~~~r~~~~~~---~~~~l~~~~~Fg~GV~Lata 107 (419)
.-+..++.+.+++++|.++|++.+|....+. .+.+-.+.--+|--++++.|
T Consensus 115 i~~sl~~~~~ia~~~G~~lPlll~klg~DPA~aS~P~itti~Di~g~~iyf~iA 168 (173)
T d2yvxa3 115 VGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSVA 168 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCGGGSCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344455677888889999998887654332 23344444444444444444
No 2
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=11.98 E-value=2.4e+02 Score=22.71 Aligned_cols=28 Identities=11% Similarity=-0.111 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 014759 361 VEGILDSMSAGILVYMALVDLIAADFLS 388 (419)
Q Consensus 361 ~~~il~alsaG~flYv~~~ell~~e~~~ 388 (419)
+.-+...+.-.+.++-+-.+=+|+|+.+
T Consensus 133 i~~~~~~~p~~~~~~~~~l~~i~~~~~e 160 (248)
T d3d31c1 133 VAMLFVSMPYLANSAREGFKSVDPRLEN 160 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhhcccchhhHHHHHHHHHHhcchhHHH
Confidence 3334444444555555566666766653
No 3
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=8.03 E-value=4.2e+02 Score=21.10 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcc
Q 014759 366 DSMSAGILVYMALVDLIAADFLS 388 (419)
Q Consensus 366 ~alsaG~flYv~~~ell~~e~~~ 388 (419)
..+.-.++++.+..+=+|+|..+
T Consensus 119 ~~~p~~~l~~~~~l~~I~~~l~E 141 (244)
T d2r6gf2 119 LGYPYMMILCMGLLKAIPDDLYE 141 (244)
T ss_dssp HHHHHHHHHHHHHGGGSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCHHHHH
Confidence 34455566667766667777663
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.11 E-value=1.8e+02 Score=16.85 Aligned_cols=17 Identities=12% Similarity=0.497 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 014759 402 YLMLFLGAGLMSLLAIW 418 (419)
Q Consensus 402 ~~~~~~G~~~ma~l~~w 418 (419)
+++.+.|.+++.+++++
T Consensus 6 lv~tv~G~~vi~~vG~F 22 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLF 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheeee
Confidence 57788899999888875
No 5
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.99 E-value=4e+02 Score=18.46 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 014759 398 QVVSYLMLFLGAGLMS 413 (419)
Q Consensus 398 ~~~~~~~~~~G~~~ma 413 (419)
|+...+.++.|..+++
T Consensus 68 r~~~~~~~~~Gi~~~~ 83 (103)
T d1r3jc_ 68 RCVAVVVMVAGITSFG 83 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555554443
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.65 E-value=3.2e+02 Score=16.85 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014759 361 VEGILDSMSAGILVYMAL 378 (419)
Q Consensus 361 ~~~il~alsaG~flYv~~ 378 (419)
+.++.-++++|+|=||+.
T Consensus 17 ~~~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 17 AAGFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhee
Confidence 346667788899999974
No 7
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.84 E-value=3.1e+02 Score=18.13 Aligned_cols=24 Identities=21% Similarity=0.631 Sum_probs=14.3
Q ss_pred CCCCC-hHHHHHHHHHHHHHHHHHH
Q 014759 129 WSKFP-FPGFFAMVASLLTLLLDFV 152 (419)
Q Consensus 129 ~~~yP-~a~li~~~gf~lvlliE~~ 152 (419)
|..-| ++.+.++..+|++.++|.+
T Consensus 24 WGTTplMgv~m~Lf~vfl~iiLeiY 48 (64)
T d2axth1 24 WGTTPLMAVFMGLFLVFLLIILEIY 48 (64)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHh
Confidence 55556 4555566666666666643
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.84 E-value=1.3e+02 Score=17.67 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=3.9
Q ss_pred hhhhhhcchh
Q 014759 105 ATGFVHMLSG 114 (419)
Q Consensus 105 atafvHLLPe 114 (419)
||++.-+.|.
T Consensus 10 At~LFilvPt 19 (36)
T d2axtm1 10 ATALFVLVPS 19 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.78 E-value=4.9e+02 Score=14.20 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 014759 363 GILDSMSAGILV 374 (419)
Q Consensus 363 ~il~alsaG~fl 374 (419)
+.+.|++.|+.+
T Consensus 13 alffgiavgiif 24 (32)
T d2e74e1 13 ALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhee
Confidence 444555555443
No 10
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.37 E-value=7.8e+02 Score=19.54 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHhhHhhh
Q 014759 57 LKFVAIASILISGIVGVAIPLI 78 (419)
Q Consensus 57 lKi~al~~Il~~S~lg~~lPl~ 78 (419)
+-.+.+.++.+.+++|-.+-++
T Consensus 39 ~~~~~~~ii~v~gi~gN~lvi~ 60 (348)
T d1u19a_ 39 MLAAYMFLLIMLGFPINFLTLY 60 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHeeh
Confidence 3344455566777777776554
Done!