Query 014761
Match_columns 419
No_of_seqs 400 out of 2063
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 1.8E-81 3.9E-86 596.8 25.6 299 23-332 65-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 6.9E-78 1.5E-82 597.3 34.7 300 22-331 31-338 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 2.7E-76 5.8E-81 602.4 30.6 305 22-333 162-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 1.6E-74 3.6E-79 587.5 31.5 303 22-334 119-446 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 1E-69 2.2E-74 535.1 31.0 289 33-333 30-324 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 6.2E-56 1.4E-60 422.9 21.6 208 117-331 1-240 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 3.6E-55 7.7E-60 416.5 22.5 210 117-332 1-237 (239)
8 cd02620 Peptidase_C1A_Cathepsi 100.0 9.3E-55 2E-59 412.9 21.6 205 118-329 1-234 (236)
9 cd02248 Peptidase_C1A Peptidas 100.0 2.6E-54 5.6E-59 402.0 22.9 207 118-331 1-210 (210)
10 PF00112 Peptidase_C1: Papain 100.0 1.7E-53 3.6E-58 397.7 19.8 213 117-332 1-219 (219)
11 PTZ00364 dipeptidyl-peptidase 100.0 1.2E-51 2.6E-56 425.8 23.1 209 114-330 202-456 (548)
12 PTZ00049 cathepsin C-like prot 100.0 2.2E-51 4.7E-56 427.9 22.1 213 114-333 378-676 (693)
13 smart00645 Pept_C1 Papain fami 100.0 2.1E-48 4.6E-53 352.7 18.0 166 117-327 1-169 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 5.7E-45 1.2E-49 340.7 20.1 194 120-315 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 3.9E-43 8.4E-48 375.4 21.4 200 129-333 544-781 (1004)
16 KOG1544 Predicted cysteine pro 100.0 1.4E-42 3E-47 326.4 8.2 264 58-329 151-456 (470)
17 COG4870 Cysteine protease [Pos 100.0 1.5E-29 3.4E-34 244.2 7.8 195 115-315 97-314 (372)
18 KOG4296 Epithelin/granulin [Si 100.0 3.4E-29 7.3E-34 190.4 4.6 69 349-418 1-69 (90)
19 smart00277 GRAN Granulin. 99.9 2.3E-23 4.9E-28 146.5 3.8 51 350-406 1-51 (51)
20 cd00585 Peptidase_C1B Peptidas 99.9 1.1E-21 2.3E-26 199.3 15.4 179 130-314 55-399 (437)
21 PF00396 Granulin: Granulin; 99.7 1.7E-18 3.7E-23 118.3 1.8 43 360-408 1-43 (43)
22 PF08246 Inhibitor_I29: Cathep 99.7 3E-17 6.5E-22 121.5 7.0 58 29-86 1-58 (58)
23 PF03051 Peptidase_C1_2: Pepti 99.6 1.6E-14 3.5E-19 147.1 15.6 179 130-314 56-400 (438)
24 smart00848 Inhibitor_I29 Cathe 99.6 5E-15 1.1E-19 109.0 5.6 57 29-85 1-57 (57)
25 COG3579 PepC Aminopeptidase C 98.6 3.1E-07 6.8E-12 88.7 9.7 76 236-313 297-401 (444)
26 PF13529 Peptidase_C39_2: Pept 97.2 0.005 1.1E-07 52.5 10.8 57 234-299 87-144 (144)
27 KOG4128 Bleomycin hydrolases a 96.5 0.0036 7.7E-08 61.0 5.2 76 130-206 63-168 (457)
28 PF08127 Propeptide_C1: Peptid 96.5 0.0027 5.8E-08 43.2 3.1 36 57-95 3-38 (41)
29 PF05543 Peptidase_C47: Stapho 95.7 0.2 4.2E-06 45.0 11.7 118 134-300 18-145 (175)
30 PF14399 Transpep_BrtH: NlpC/p 87.7 1.5 3.2E-05 43.0 6.8 55 236-297 78-133 (317)
31 COG4990 Uncharacterized protei 80.5 3.5 7.7E-05 37.2 5.2 51 230-300 117-168 (195)
32 cd02549 Peptidase_C39A A sub-f 68.8 14 0.00029 31.2 5.9 44 239-299 70-114 (141)
33 PF09778 Guanylate_cyc_2: Guan 64.0 22 0.00047 33.2 6.4 57 235-297 112-180 (212)
34 cd00044 CysPc Calpains, domain 63.2 29 0.00064 34.2 7.8 27 275-301 235-263 (315)
35 PF12385 Peptidase_C70: Papain 54.2 1.6E+02 0.0035 26.2 9.9 37 236-287 98-135 (166)
36 PF04885 Stig1: Stigma-specifi 47.4 22 0.00048 30.8 3.4 17 346-362 57-73 (136)
37 cd00206 snake_toxin Snake toxi 42.7 23 0.00049 26.3 2.4 47 349-400 11-64 (64)
38 PF14625 Lustrin_cystein: Lust 40.2 28 0.0006 23.6 2.4 18 345-362 15-32 (45)
39 PF11567 PfUIS3: Plasmodium fa 40.1 23 0.00049 28.1 2.1 28 46-86 20-47 (101)
40 PF07172 GRP: Glycine rich pro 35.5 19 0.00041 29.2 1.1 12 1-12 1-12 (95)
41 PF01640 Peptidase_C10: Peptid 30.0 2.2E+02 0.0048 25.9 7.3 51 237-310 141-192 (192)
42 PF05391 Lsm_interact: Lsm int 27.6 34 0.00074 19.7 0.9 13 80-92 9-21 (21)
43 smart00289 WR1 Worm-specific r 25.5 66 0.0014 20.7 2.2 19 344-362 11-29 (38)
44 PF13333 rve_2: Integrase core 23.7 1.4E+02 0.0029 20.9 3.7 40 36-91 13-52 (52)
45 PF07829 Toxin_14: Alpha-A con 21.0 43 0.00094 19.8 0.5 10 375-384 1-11 (26)
46 PRK00404 tatB sec-independent 20.9 88 0.0019 27.3 2.6 29 17-45 20-48 (141)
47 PF08139 LPAM_1: Prokaryotic m 20.6 71 0.0015 19.3 1.4 14 2-15 8-21 (25)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-81 Score=596.84 Aligned_cols=299 Identities=42% Similarity=0.781 Sum_probs=263.4
Q ss_pred hhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHhhhhhhccccCCcccccc
Q 014761 23 SDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDHDR 102 (419)
Q Consensus 23 ~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~~~~~~~~ 102 (419)
....+.|..|+.+|+|+|.+.+|...|+.||++|++.+++++.....+.++|+|+|||||+|||++++++.+.. .....
T Consensus 65 l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~-~~~~~ 143 (372)
T KOG1542|consen 65 LGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRR-GSKLP 143 (372)
T ss_pred cchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccc-cccCc
Confidence 34588999999999999999999999999999999999999988455999999999999999999999987763 11111
Q ss_pred cCCccccCCCCCCCCCCeeeccCCCCcccccCCCCCCchHHHHHHHHHHHHHHHHhCCCcccChHHHhhhcCCCCCCCCC
Q 014761 103 RRNASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGG 182 (419)
Q Consensus 103 ~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~~~~~LS~q~l~dc~~~~~~gC~G 182 (419)
....... ......||++||||++|.||||||||+||||||||+++++|++++|++|++++||||||+||+. .++||+|
T Consensus 144 ~~~~~~~-~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~-~d~gC~G 221 (372)
T KOG1542|consen 144 GDAAEAP-IEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS-CDNGCNG 221 (372)
T ss_pred cccccCc-CCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC-cCCcCCC
Confidence 1111111 1345789999999999999999999999999999999999999999999999999999999997 5899999
Q ss_pred CchHHHHHHHHHhCCcCCCCCCCCCCCCC-CCCcCcCCcceEEeeeeeecCCChHHHHHHHHHh-CCeEEEEecCccccc
Q 014761 183 GLMDYAYQFVIKNHGIDTEKDYPYRGQAG-QCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQ 260 (419)
Q Consensus 183 G~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~al~~-gPV~v~i~~~~~~f~ 260 (419)
|.+..||+|+++.+|+..|++|||++..+ .|...+ ...++.|++|..++. ||++|.+.|.+ |||+|+|++ ..+|
T Consensus 222 Gl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~-~~~~v~I~~f~~l~~-nE~~ia~wLv~~GPi~vgiNa--~~mQ 297 (372)
T KOG1542|consen 222 GLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDK-SKIVVSIKDFSMLSN-NEDQIAAWLVTFGPLSVGINA--KPMQ 297 (372)
T ss_pred CChhHHHHHHHHhCCccccccCCccccCCCccccch-hhceEEEeccEecCC-CHHHHHHHHHhcCCeEEEEch--HHHH
Confidence 99999999998999999999999999887 898865 557789999999984 78888888775 999999997 4799
Q ss_pred ccCCceEeC---CCCCC-CCeEEEEEEEeecC-CeeEEEEEccCCCCCCCCceEEEEecCCCCCCcccccccccccc
Q 014761 261 LYSSGIFTG---PCSTS-LDHAVLIVGYDSEN-GVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 332 (419)
Q Consensus 261 ~Y~~Giy~~---~c~~~-~~HaV~iVGyg~~~-g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~ 332 (419)
+|.+||+.+ .|+.. ++|||+|||||... .++|||||||||++|||+||+|+.||.| .|||+.+++-+.
T Consensus 298 ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N----~CGi~~mvss~~ 370 (372)
T KOG1542|consen 298 FYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSN----ACGIADMVSSAA 370 (372)
T ss_pred HhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEecccc----ccccccchhhhh
Confidence 999999977 68774 89999999999987 8999999999999999999999999975 899999987554
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=6.9e-78 Score=597.30 Aligned_cols=300 Identities=36% Similarity=0.689 Sum_probs=250.9
Q ss_pred chhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHhhhhhhccccCCccccc
Q 014761 22 CSDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDHD 101 (419)
Q Consensus 22 ~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~~~~~~~ 101 (419)
..++..+|++|+++|+|+|.+.+|+.+|+.||++|+++|++||++ +.+|+||+|+|+|||+|||++.+++.........
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~ 109 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQAR-NPHARFGITKFFDLSEAEFAARYLNGAAYFAAAK 109 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccccccCCHHHHHHHhcCCCccccccc
Confidence 567888999999999999999889999999999999999999987 6799999999999999999987764221110000
Q ss_pred ccCCccccC-CCCCCCCCCeeeccCCCCcccccCCCCCCchHHHHHHHHHHHHHHHHhCCCcccChHHHhhhcCCCCCCC
Q 014761 102 RRRNASVQS-PGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 180 (419)
Q Consensus 102 ~~~~~~~~~-~~~~~~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~~~~~LS~q~l~dc~~~~~~gC 180 (419)
......+.. .....+||++||||++|+|+||||||.||||||||+++++|++++|+++++++||+|||+||+. .+.||
T Consensus 110 ~~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~-~~~GC 188 (348)
T PTZ00203 110 QHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH-VDNGC 188 (348)
T ss_pred ccccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC-CCCCC
Confidence 000011110 1122468999999999999999999999999999999999999999999999999999999987 47899
Q ss_pred CCCchHHHHHHHHHh--CCcCCCCCCCCCCCCC---CCCcCcCCcceEEeeeeeecCCChHHHHHHHHHh-CCeEEEEec
Q 014761 181 GGGLMDYAYQFVIKN--HGIDTEKDYPYRGQAG---QCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICG 254 (419)
Q Consensus 181 ~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~al~~-gPV~v~i~~ 254 (419)
+||++..||+|+.++ +|+.+|++|||.+.++ .|.........+.+++|..++. ++++|+++|++ |||+|+|++
T Consensus 189 ~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a 267 (348)
T PTZ00203 189 GGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVDA 267 (348)
T ss_pred CCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEEh
Confidence 999999999999765 6789999999998765 5864322223467889988875 67889998885 999999998
Q ss_pred CcccccccCCceEeCCCCC-CCCeEEEEEEEeecCCeeEEEEEccCCCCCCCCceEEEEecCCCCCCccccccccccc
Q 014761 255 SERAFQLYSSGIFTGPCST-SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 331 (419)
Q Consensus 255 ~~~~f~~Y~~Giy~~~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p 331 (419)
.+|++|++|||+. |.. .++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||++.++..
T Consensus 268 --~~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~----n~Cgi~~~~~~~ 338 (348)
T PTZ00203 268 --SSFMSYHSGVLTS-CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGV----NACLLTGYPVSV 338 (348)
T ss_pred --hhhcCccCceeec-cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCC----CcccccceEEEE
Confidence 3799999999985 654 579999999999988999999999999999999999999975 489999766654
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=2.7e-76 Score=602.40 Aligned_cols=305 Identities=37% Similarity=0.667 Sum_probs=258.0
Q ss_pred chhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHhhhhhhccccCCc-cc-
Q 014761 22 CSDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAAS-ID- 99 (419)
Q Consensus 22 ~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~~~-~~- 99 (419)
..+....|++|+++|+|+|.+.+|+.+|+.||++|+++|++||++++.+|++|+|+|+|||.|||++.+++..... ..
T Consensus 162 n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~ 241 (489)
T PTZ00021 162 NLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSN 241 (489)
T ss_pred ChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccccccc
Confidence 4455678999999999999999999999999999999999999876789999999999999999999887643210 00
Q ss_pred cc-ccC----C---ccccCCCCCCCCCCeeeccCCCCcccccCCCCCCchHHHHHHHHHHHHHHHHhCCCcccChHHHhh
Q 014761 100 HD-RRR----N---ASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELID 171 (419)
Q Consensus 100 ~~-~~~----~---~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~~~~~LS~q~l~d 171 (419)
.. ... . ..+. +.....+|++||||+.|.|+||||||.||||||||+++++|++++|+++.+++||+|||+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~-~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVD 320 (489)
T PTZ00021 242 GKKSPRVINYDDVIKKYK-PKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVD 320 (489)
T ss_pred cccccccccccccccccc-cccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhh
Confidence 00 000 0 0011 1111124999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCCCCCC-CCCCCcCcCCcceEEeeeeeecCCChHHHHHHHHHh-CCeE
Q 014761 172 CDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQ-AGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVS 249 (419)
Q Consensus 172 c~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~al~~-gPV~ 249 (419)
|+. .+.||.||++..|++|+.+++||++|++|||.+. .+.|.... ....++|++|..++ +++|+++|+. |||+
T Consensus 321 Cs~-~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~-~~~~~~i~~y~~i~---~~~lk~al~~~GPVs 395 (489)
T PTZ00021 321 CSF-KNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDR-CKEKYKIKSYVSIP---EDKFKEAIRFLGPIS 395 (489)
T ss_pred hcc-CCCCCCCcchHhhhhhhhhccccCcccccCccCCCCCcccccc-ccccceeeeEEEec---HHHHHHHHHhcCCeE
Confidence 996 4889999999999999988889999999999987 47897543 23457889998886 4679999985 9999
Q ss_pred EEEecCcccccccCCceEeCCCCCCCCeEEEEEEEeecCC----------eeEEEEEccCCCCCCCCceEEEEecCCCCC
Q 014761 250 VGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENG----------VDYWIIKNSWGRSWGMNGYMHMQRNTGNSL 319 (419)
Q Consensus 250 v~i~~~~~~f~~Y~~Giy~~~c~~~~~HaV~iVGyg~~~g----------~~yWivkNSWG~~WGe~GY~~i~r~~~~~~ 319 (419)
|+|++. .+|++|++|||++.|+..++|||+|||||++++ .+|||||||||++|||+|||||+|+.+...
T Consensus 396 v~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~ 474 (489)
T PTZ00021 396 VSIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLM 474 (489)
T ss_pred EEEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCC
Confidence 999996 689999999999889888999999999997632 479999999999999999999999875556
Q ss_pred Cccccccccccccc
Q 014761 320 GICGINMLASYPTK 333 (419)
Q Consensus 320 ~~CgI~~~~~~p~~ 333 (419)
|+|||++.++||+.
T Consensus 475 n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 475 KTCSLGTEAYVPLI 488 (489)
T ss_pred CCCCCcccceeEec
Confidence 79999999999974
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1.6e-74 Score=587.46 Aligned_cols=303 Identities=35% Similarity=0.652 Sum_probs=254.3
Q ss_pred chhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHhhhhhhccccCCccccc
Q 014761 22 CSDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDHD 101 (419)
Q Consensus 22 ~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~~~~~~~ 101 (419)
+.++..+|++|+++|+|+|.+.+|+.+|+.||++|+++|++||. +.+|++|+|+|+|||+|||++.+++...+.....
T Consensus 119 e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~ 196 (448)
T PTZ00200 119 EFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG--DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNS 196 (448)
T ss_pred hHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC--cCCeEEeccccccCCHHHHHHHhccCCCcccccc
Confidence 66778899999999999999999999999999999999999996 4689999999999999999988765432111000
Q ss_pred --c--------cCCccccCC--------C----CCCCCCCeeeccCCCCcccccCCC-CCCchHHHHHHHHHHHHHHHHh
Q 014761 102 --R--------RRNASVQSP--------G----NLRDVPASIDWRKKGAVTEVKDQA-SCGACWAFSATGAIEGINKIVT 158 (419)
Q Consensus 102 --~--------~~~~~~~~~--------~----~~~~lP~~~Dwr~~g~vtpVkdQg-~cGsCwAfA~~~~~E~~~~i~~ 158 (419)
. .....+... . ....+|++||||+.|.|+|||||| .||||||||+++++|++++|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~ 276 (448)
T PTZ00200 197 TSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYR 276 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhc
Confidence 0 000001000 0 012369999999999999999999 9999999999999999999999
Q ss_pred CCCcccChHHHhhhcCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCCCCCCCCCCCcCcCCcceEEeeeeeecCCChHHH
Q 014761 159 GSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQ 238 (419)
Q Consensus 159 ~~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~ 238 (419)
+..+.||+|||+||+. .+.||.||++..|++|+.+ .||++|++|||.+..+.|.... ...+.|.+|..++ ..+.
T Consensus 277 ~~~~~LSeQqLvDC~~-~~~GC~GG~~~~A~~yi~~-~Gi~~e~~YPY~~~~~~C~~~~--~~~~~i~~y~~~~--~~~~ 350 (448)
T PTZ00200 277 DKSVDLSEQELVNCDT-KSQGCSGGYPDTALEYVKN-KGLSSSSDVPYLAKDGKCVVSS--TKKVYIDSYLVAK--GKDV 350 (448)
T ss_pred CCCeecCHHHHhhccC-ccCCCCCCcHHHHHHHHhh-cCccccccCCCCCCCCCCcCCC--CCeeEecceEecC--HHHH
Confidence 9999999999999996 4789999999999999965 4999999999999999997543 2345688887664 3466
Q ss_pred HHHHHHhCCeEEEEecCcccccccCCceEeCCCCCCCCeEEEEEEEee--cCCeeEEEEEccCCCCCCCCceEEEEecCC
Q 014761 239 LLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDS--ENGVDYWIIKNSWGRSWGMNGYMHMQRNTG 316 (419)
Q Consensus 239 l~~al~~gPV~v~i~~~~~~f~~Y~~Giy~~~c~~~~~HaV~iVGyg~--~~g~~yWivkNSWG~~WGe~GY~~i~r~~~ 316 (419)
+++++..|||+|+|.+. .+|++|++|||+++|+..++|||+|||||. ++|.+|||||||||++|||+|||||+|+..
T Consensus 351 l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~ 429 (448)
T PTZ00200 351 LNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNE 429 (448)
T ss_pred HHHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCC
Confidence 77788789999999986 689999999999889888999999999984 468899999999999999999999999752
Q ss_pred CCCCcccccccccccccc
Q 014761 317 NSLGICGINMLASYPTKT 334 (419)
Q Consensus 317 ~~~~~CgI~~~~~~p~~~ 334 (419)
+.|.|||++.+.||+..
T Consensus 430 -g~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 430 -GTDKCGILTVGLTPVFY 446 (448)
T ss_pred -CCCcCCccccceeeEEe
Confidence 45799999999999864
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-69 Score=535.08 Aligned_cols=289 Identities=44% Similarity=0.780 Sum_probs=252.0
Q ss_pred HHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHhhhhhhccccCCcccccccCCccccCCC
Q 014761 33 CKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDHDRRRNASVQSPG 112 (419)
Q Consensus 33 ~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~~~~~~~~~~~~~~~~~~ 112 (419)
+.+|.+.|.+..|+..|+.+|.+|+++|+.||.....+|++++|+|+|+|.||+++.+.+..+..... .......
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~~-----~~~~~~~ 104 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIKR-----DKFTEKL 104 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccccc-----ccccccc
Confidence 67777888777889999999999999999999977899999999999999999999887765543311 1111123
Q ss_pred CCCCCCCeeeccCCC-CcccccCCCCCCchHHHHHHHHHHHHHHHHhC-CCcccChHHHhhhcCCCCCCCCCCchHHHHH
Q 014761 113 NLRDVPASIDWRKKG-AVTEVKDQASCGACWAFSATGAIEGINKIVTG-SLVSLSEQELIDCDRSYNSGCGGGLMDYAYQ 190 (419)
Q Consensus 113 ~~~~lP~~~Dwr~~g-~vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~-~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~ 190 (419)
...++|++||||++| .++||||||.||||||||++++||++++|+++ .+++||+|||+||+...+.||+||.+..|++
T Consensus 105 ~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~~ 184 (325)
T KOG1543|consen 105 DGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAFK 184 (325)
T ss_pred chhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHHH
Confidence 356899999999997 45559999999999999999999999999999 8999999999999986688999999999999
Q ss_pred HHHHhCCcCCCCCCCCCCCCCCCCcCcCCcceEEeeeeeecCCChHHHHHHHHHh-CCeEEEEecCcccccccCCceEeC
Q 014761 191 FVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTG 269 (419)
Q Consensus 191 ~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~~Giy~~ 269 (419)
|+.+++++.++++|||.+..+.|..... ...+.+.++..++.+ +++|+++|++ |||+|+|++.. +|++|++|||.+
T Consensus 185 yi~~~G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~~GVy~~ 261 (325)
T KOG1543|consen 185 YIKKNGGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-DFSLYKGGVYAE 261 (325)
T ss_pred HHHHhCCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-hhhhccCceEeC
Confidence 9998865555999999999999998765 566788899888866 8999999986 89999999986 999999999987
Q ss_pred CCCC--CCCeEEEEEEEeecCCeeEEEEEccCCCCCCCCceEEEEecCCCCCCcccccccccc-ccc
Q 014761 270 PCST--SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASY-PTK 333 (419)
Q Consensus 270 ~c~~--~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~-p~~ 333 (419)
++.+ .++|||+|||||+.++.+|||||||||++|||+|||||.|+.+ .|+|++.++| |++
T Consensus 262 ~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~----~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 262 EKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVN----KCGIASEASYGPIK 324 (325)
T ss_pred CCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCC----chhhhcccccCCCC
Confidence 7655 5999999999999667899999999999999999999999986 7999999998 653
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=6.2e-56 Score=422.86 Aligned_cols=208 Identities=32% Similarity=0.660 Sum_probs=177.0
Q ss_pred CCCeeeccCCC----CcccccCCCCCCchHHHHHHHHHHHHHHHHhCC------CcccChHHHhhhcCCCCCCCCCCchH
Q 014761 117 VPASIDWRKKG----AVTEVKDQASCGACWAFSATGAIEGINKIVTGS------LVSLSEQELIDCDRSYNSGCGGGLMD 186 (419)
Q Consensus 117 lP~~~Dwr~~g----~vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~~------~~~LS~q~l~dc~~~~~~gC~GG~~~ 186 (419)
||++||||+.+ +|+||||||.||||||||++++||++++|++++ .+.||+|||+||+. .+.||+||++.
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~-~~~GC~GG~~~ 79 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ-YSQGCDGGFPF 79 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC-CCCCCCCCCHH
Confidence 79999999998 999999999999999999999999999998876 68999999999986 47899999999
Q ss_pred HHHHHHHHhCCcCCCCCCCCCC-CCCCCCcCcCCcceEEeeeeeec----CCChHHHHHHHHHh-CCeEEEEecCccccc
Q 014761 187 YAYQFVIKNHGIDTEKDYPYRG-QAGQCNKQKLNRHIVTIDGYKDV----PENNEKQLLQAVVA-QPVSVGICGSERAFQ 260 (419)
Q Consensus 187 ~a~~~~~~~~Gi~~e~~yPY~~-~~~~C~~~~~~~~~~~i~~y~~v----~~~~~~~l~~al~~-gPV~v~i~~~~~~f~ 260 (419)
.|++|+.++ |+++|++|||.. ....|.........+.++.|..+ ..+++++||++|++ |||+|+|++. ++|+
T Consensus 80 ~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F~ 157 (243)
T cd02621 80 LVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDFD 157 (243)
T ss_pred HHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-cccc
Confidence 999998654 999999999998 67789754312222334444433 13467899999885 9999999986 6899
Q ss_pred ccCCceEeCC-----CCC---------CCCeEEEEEEEeecC--CeeEEEEEccCCCCCCCCceEEEEecCCCCCCcccc
Q 014761 261 LYSSGIFTGP-----CST---------SLDHAVLIVGYDSEN--GVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 324 (419)
Q Consensus 261 ~Y~~Giy~~~-----c~~---------~~~HaV~iVGyg~~~--g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI 324 (419)
+|++|||+.. |.. .++|||+|||||+++ |++|||||||||++|||+|||||+|+. +.|||
T Consensus 158 ~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~----~~cgi 233 (243)
T cd02621 158 FYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT----NECGI 233 (243)
T ss_pred ccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC----cccCc
Confidence 9999999764 532 479999999999876 899999999999999999999999976 48999
Q ss_pred ccccccc
Q 014761 325 NMLASYP 331 (419)
Q Consensus 325 ~~~~~~p 331 (419)
++.+++.
T Consensus 234 ~~~~~~~ 240 (243)
T cd02621 234 ESQAVFA 240 (243)
T ss_pred ccceEee
Confidence 9988654
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=3.6e-55 Score=416.52 Aligned_cols=210 Identities=29% Similarity=0.632 Sum_probs=179.6
Q ss_pred CCCeeeccCCC---CcccccCCC---CCCchHHHHHHHHHHHHHHHHhC---CCcccChHHHhhhcCCCCCCCCCCchHH
Q 014761 117 VPASIDWRKKG---AVTEVKDQA---SCGACWAFSATGAIEGINKIVTG---SLVSLSEQELIDCDRSYNSGCGGGLMDY 187 (419)
Q Consensus 117 lP~~~Dwr~~g---~vtpVkdQg---~cGsCwAfA~~~~~E~~~~i~~~---~~~~LS~q~l~dc~~~~~~gC~GG~~~~ 187 (419)
||++||||+++ +|+|||||| .||||||||++++||+++.|+++ ..+.||+|||+||+. +.||+||++..
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~gC~GG~~~~ 78 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGGDPGG 78 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CCCccCcCHHH
Confidence 69999999988 999999998 89999999999999999999875 357899999999987 78999999999
Q ss_pred HHHHHHHhCCcCCCCCCCCCCCCCCCCcCc--------------CCcceEEeeeeeecCCChHHHHHHHHH-hCCeEEEE
Q 014761 188 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQK--------------LNRHIVTIDGYKDVPENNEKQLLQAVV-AQPVSVGI 252 (419)
Q Consensus 188 a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~--------------~~~~~~~i~~y~~v~~~~~~~l~~al~-~gPV~v~i 252 (419)
|++|+.++ |+++|++|||......|.... .....+.+++|..++ ++++||++|. +|||+|+|
T Consensus 79 a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i 155 (239)
T cd02698 79 VYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGI 155 (239)
T ss_pred HHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEE
Confidence 99999764 999999999998766665311 012346778887775 4678888876 59999999
Q ss_pred ecCcccccccCCceEeCC-CCCCCCeEEEEEEEeecC-CeeEEEEEccCCCCCCCCceEEEEecC-CCCCCccccccccc
Q 014761 253 CGSERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSEN-GVDYWIIKNSWGRSWGMNGYMHMQRNT-GNSLGICGINMLAS 329 (419)
Q Consensus 253 ~~~~~~f~~Y~~Giy~~~-c~~~~~HaV~iVGyg~~~-g~~yWivkNSWG~~WGe~GY~~i~r~~-~~~~~~CgI~~~~~ 329 (419)
.+. ++|+.|++|||+.. |...++|||+|||||+++ |++|||||||||++|||+|||||+|+. ....+.|||++++.
T Consensus 156 ~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~ 234 (239)
T cd02698 156 MAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCA 234 (239)
T ss_pred Eec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceE
Confidence 997 58999999999764 455689999999999876 999999999999999999999999987 22335899999999
Q ss_pred ccc
Q 014761 330 YPT 332 (419)
Q Consensus 330 ~p~ 332 (419)
|+.
T Consensus 235 ~~~ 237 (239)
T cd02698 235 WAD 237 (239)
T ss_pred EEe
Confidence 875
No 8
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=9.3e-55 Score=412.90 Aligned_cols=205 Identities=33% Similarity=0.645 Sum_probs=172.7
Q ss_pred CCeeeccCC--CC--cccccCCCCCCchHHHHHHHHHHHHHHHHhC--CCcccChHHHhhhcCCCCCCCCCCchHHHHHH
Q 014761 118 PASIDWRKK--GA--VTEVKDQASCGACWAFSATGAIEGINKIVTG--SLVSLSEQELIDCDRSYNSGCGGGLMDYAYQF 191 (419)
Q Consensus 118 P~~~Dwr~~--g~--vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~--~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~ 191 (419)
|++||||++ ++ |+||+|||.||+|||||++++||+++.|+++ +.+.||+|||+||+...+.||+||++..|++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 889999996 45 4599999999999999999999999999888 77899999999998744789999999999999
Q ss_pred HHHhCCcCCCCCCCCCCCCCC------------------CCcCcC---CcceEEeeeeeecCCChHHHHHHHHHh-CCeE
Q 014761 192 VIKNHGIDTEKDYPYRGQAGQ------------------CNKQKL---NRHIVTIDGYKDVPENNEKQLLQAVVA-QPVS 249 (419)
Q Consensus 192 ~~~~~Gi~~e~~yPY~~~~~~------------------C~~~~~---~~~~~~i~~y~~v~~~~~~~l~~al~~-gPV~ 249 (419)
+.++ |+++|++|||...... |..... ....+.+..+..+. .++++||.+|.+ |||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeE
Confidence 9765 9999999999876543 332211 11223455555554 467899999875 9999
Q ss_pred EEEecCcccccccCCceEeCCCCC-CCCeEEEEEEEeecCCeeEEEEEccCCCCCCCCceEEEEecCCCCCCcccccccc
Q 014761 250 VGICGSERAFQLYSSGIFTGPCST-SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLA 328 (419)
Q Consensus 250 v~i~~~~~~f~~Y~~Giy~~~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~ 328 (419)
|+|.+. ++|+.|++|||+..+.. .++|||+|||||+++|++|||||||||++|||+|||||+|+. +.|||++.+
T Consensus 159 v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~----~~cgi~~~~ 233 (236)
T cd02620 159 AAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS----NECGIESEV 233 (236)
T ss_pred EEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC----cccccccce
Confidence 999985 78999999999866554 468999999999989999999999999999999999999975 489999886
Q ss_pred c
Q 014761 329 S 329 (419)
Q Consensus 329 ~ 329 (419)
+
T Consensus 234 ~ 234 (236)
T cd02620 234 V 234 (236)
T ss_pred e
Confidence 5
No 9
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=2.6e-54 Score=402.04 Aligned_cols=207 Identities=56% Similarity=1.079 Sum_probs=186.0
Q ss_pred CCeeeccCCCCcccccCCCCCCchHHHHHHHHHHHHHHHHhCCCcccChHHHhhhcCCCCCCCCCCchHHHHHHHHHhCC
Q 014761 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHG 197 (419)
Q Consensus 118 P~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~G 197 (419)
|++||||+.+.++||+|||.||+|||||++++||++++++++...+||+|+|++|....+.||.||++..|++++. +.|
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~-~~G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVK-NGG 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHH-HCC
Confidence 7899999999999999999999999999999999999999998899999999999874478999999999999874 569
Q ss_pred cCCCCCCCCCCCCCCCCcCcCCcceEEeeeeeecCCChHHHHHHHHHh-CCeEEEEecCcccccccCCceEeCCCC--CC
Q 014761 198 IDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCS--TS 274 (419)
Q Consensus 198 i~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~~Giy~~~c~--~~ 274 (419)
+++|++|||......|.... ....++|.+|..++..++++||++|++ |||+++|.+. ++|+.|++|||+.++. ..
T Consensus 80 i~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~~~ 157 (210)
T cd02248 80 LASESDYPYTGKDGTCKYNS-SKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSNTN 157 (210)
T ss_pred cCccccCCccCCCCCccCCC-CcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCCCc
Confidence 99999999999888897653 346688999999987678899999987 8999999986 6899999999976543 46
Q ss_pred CCeEEEEEEEeecCCeeEEEEEccCCCCCCCCceEEEEecCCCCCCccccccccccc
Q 014761 275 LDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 331 (419)
Q Consensus 275 ~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p 331 (419)
++|||+|||||++.+++|||||||||++||++|||||+|+. +.|||+..+.||
T Consensus 158 ~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~ 210 (210)
T cd02248 158 LNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS----NLCGIASYASYP 210 (210)
T ss_pred CCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC----CccCceeeeecC
Confidence 79999999999998999999999999999999999999976 489999888776
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=1.7e-53 Score=397.69 Aligned_cols=213 Identities=49% Similarity=0.899 Sum_probs=184.5
Q ss_pred CCCeeeccCC-CCcccccCCCCCCchHHHHHHHHHHHHHHHHh-CCCcccChHHHhhhcCCCCCCCCCCchHHHHHHHHH
Q 014761 117 VPASIDWRKK-GAVTEVKDQASCGACWAFSATGAIEGINKIVT-GSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIK 194 (419)
Q Consensus 117 lP~~~Dwr~~-g~vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~-~~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~ 194 (419)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|....+.+|+||++..|++++.+
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999998 788999999999999744679999999999999988
Q ss_pred hCCcCCCCCCCCCCCC-CCCCcCcCCcceEEeeeeeecCCChHHHHHHHHHh-CCeEEEEecCcccccccCCceEeCC-C
Q 014761 195 NHGIDTEKDYPYRGQA-GQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGP-C 271 (419)
Q Consensus 195 ~~Gi~~e~~yPY~~~~-~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~~Giy~~~-c 271 (419)
+.|+++|++|||.... ..|.........+++..|..+...++++||++|.+ |||+++|.+...+|+.|++|||+.+ +
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~ 160 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDC 160 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSS
T ss_pred cCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecccc
Confidence 5799999999999887 68887643333578899998887778999999997 9999999997547999999999764 5
Q ss_pred CC-CCCeEEEEEEEeecCCeeEEEEEccCCCCCCCCceEEEEecCCCCCCcccccccccccc
Q 014761 272 ST-SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 332 (419)
Q Consensus 272 ~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~ 332 (419)
.. .++|||+|||||++.+++|||||||||++||++|||||+|+.+ ++|||+.+++||+
T Consensus 161 ~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~---~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 161 SNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN---NECGIESQAVYPI 219 (219)
T ss_dssp SSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS---SGGGTTSSEEEEE
T ss_pred ccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC---CcCccCceeeecC
Confidence 53 6799999999999999999999999999999999999999865 4899999999996
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.2e-51 Score=425.79 Aligned_cols=209 Identities=23% Similarity=0.510 Sum_probs=173.9
Q ss_pred CCCCCCeeeccCCC---CcccccCCCC---CCchHHHHHHHHHHHHHHHHhC------CCcccChHHHhhhcCCCCCCCC
Q 014761 114 LRDVPASIDWRKKG---AVTEVKDQAS---CGACWAFSATGAIEGINKIVTG------SLVSLSEQELIDCDRSYNSGCG 181 (419)
Q Consensus 114 ~~~lP~~~Dwr~~g---~vtpVkdQg~---cGsCwAfA~~~~~E~~~~i~~~------~~~~LS~q~l~dc~~~~~~gC~ 181 (419)
..+||++||||++| +|+||||||. ||||||||++++||++++|+++ ..+.||+|||+||+. ++.||+
T Consensus 202 ~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~-~n~GCd 280 (548)
T PTZ00364 202 GDPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ-YGQGCA 280 (548)
T ss_pred ccCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC-CCCCCC
Confidence 36799999999987 7999999999 9999999999999999999874 468899999999986 589999
Q ss_pred CCchHHHHHHHHHhCCcCCCCCC--CCCCCCC---CCCcCcCCcc-----eEEeeeeeecCCChHHHHHHHHHh-CCeEE
Q 014761 182 GGLMDYAYQFVIKNHGIDTEKDY--PYRGQAG---QCNKQKLNRH-----IVTIDGYKDVPENNEKQLLQAVVA-QPVSV 250 (419)
Q Consensus 182 GG~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~C~~~~~~~~-----~~~i~~y~~v~~~~~~~l~~al~~-gPV~v 250 (419)
||++..|++|+.+ .||++|++| ||.+.++ .|........ ...|.+|..+. +++++|+.+|++ |||+|
T Consensus 281 GG~p~~A~~yi~~-~GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVsV 358 (548)
T PTZ00364 281 GGFPEEVGKFAET-FGILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVPA 358 (548)
T ss_pred CCcHHHHHHHHHh-CCcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeEE
Confidence 9999999999965 599999999 9987655 4865432211 12344454444 467789988875 99999
Q ss_pred EEecCcccccccCCceEeCC---------C-----------CCCCCeEEEEEEEee-cCCeeEEEEEccCCC--CCCCCc
Q 014761 251 GICGSERAFQLYSSGIFTGP---------C-----------STSLDHAVLIVGYDS-ENGVDYWIIKNSWGR--SWGMNG 307 (419)
Q Consensus 251 ~i~~~~~~f~~Y~~Giy~~~---------c-----------~~~~~HaV~iVGyg~-~~g~~yWivkNSWG~--~WGe~G 307 (419)
+|++. .+|+.|++|||.+. | ...++|||+|||||+ ++|++|||||||||+ +|||+|
T Consensus 359 aIda~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~G 437 (548)
T PTZ00364 359 SVYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGG 437 (548)
T ss_pred EEEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCC
Confidence 99997 68999999998521 1 134799999999996 578899999999999 999999
Q ss_pred eEEEEecCCCCCCcccccccccc
Q 014761 308 YMHMQRNTGNSLGICGINMLASY 330 (419)
Q Consensus 308 Y~~i~r~~~~~~~~CgI~~~~~~ 330 (419)
||||+|+. |.|||++.++.
T Consensus 438 YfRI~RG~----N~CGIes~~v~ 456 (548)
T PTZ00364 438 TRKIARGV----NAYNIESEVVV 456 (548)
T ss_pred eEEEEcCC----Ccccccceeee
Confidence 99999986 48999998873
No 12
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=2.2e-51 Score=427.92 Aligned_cols=213 Identities=27% Similarity=0.559 Sum_probs=175.8
Q ss_pred CCCCCCeeeccCC----CCcccccCCCCCCchHHHHHHHHHHHHHHHHhCCC----------cccChHHHhhhcCCCCCC
Q 014761 114 LRDVPASIDWRKK----GAVTEVKDQASCGACWAFSATGAIEGINKIVTGSL----------VSLSEQELIDCDRSYNSG 179 (419)
Q Consensus 114 ~~~lP~~~Dwr~~----g~vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~~~----------~~LS~q~l~dc~~~~~~g 179 (419)
..+||++||||+. +.++||+|||.||||||||++++||++++|++++. ..||+|+|+||+. .+.|
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~-~nqG 456 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF-YDQG 456 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC-CCCC
Confidence 4689999999984 67999999999999999999999999999986431 2799999999987 5889
Q ss_pred CCCCchHHHHHHHHHhCCcCCCCCCCCCCCCCCCCcCcCC--------------------------------------cc
Q 014761 180 CGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLN--------------------------------------RH 221 (419)
Q Consensus 180 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~--------------------------------------~~ 221 (419)
|+||++..|++|+.+. ||++|++|||.+..+.|...... ..
T Consensus 457 C~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (693)
T PTZ00049 457 CNGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPA 535 (693)
T ss_pred cCCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999655 99999999999887888542110 01
Q ss_pred eEEeeeeeecC-------CChHHHHHHHHHh-CCeEEEEecCcccccccCCceEeC-------CCCC-------------
Q 014761 222 IVTIDGYKDVP-------ENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTG-------PCST------------- 273 (419)
Q Consensus 222 ~~~i~~y~~v~-------~~~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~~Giy~~-------~c~~------------- 273 (419)
.+.++.|..+. .+++++|+++|+. |||+|+|++. ++|++|++|||+. .|..
T Consensus 536 r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G 614 (693)
T PTZ00049 536 RWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614 (693)
T ss_pred ceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCccccccccccccc
Confidence 12345555553 2467889988875 9999999986 6899999999964 2532
Q ss_pred --CCCeEEEEEEEeec--CCe--eEEEEEccCCCCCCCCceEEEEecCCCCCCccccccccccccc
Q 014761 274 --SLDHAVLIVGYDSE--NGV--DYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 333 (419)
Q Consensus 274 --~~~HaV~iVGyg~~--~g~--~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~~ 333 (419)
.++|||+|||||.+ +|+ +|||||||||++|||+|||||+|+. |.|||++.++|+..
T Consensus 615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~----N~CGIEs~a~~~~p 676 (693)
T PTZ00049 615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK----NFSGIESQSLFIEP 676 (693)
T ss_pred cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC----CccCCccceeEEee
Confidence 36999999999974 464 7999999999999999999999986 48999999998763
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=2.1e-48 Score=352.68 Aligned_cols=166 Identities=60% Similarity=1.118 Sum_probs=148.0
Q ss_pred CCCeeeccCCCCcccccCCCCCCchHHHHHHHHHHHHHHHHhCCCcccChHHHhhhcCCCCCCCCCCchHHHHHHHHHhC
Q 014761 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNH 196 (419)
Q Consensus 117 lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~ 196 (419)
||++||||+.++++||+|||.||+|||||+++++|+++++++++.++||+|+|++|....+.||.||++..|++|+.++.
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998999999999999974356999999999999997766
Q ss_pred CcCCCCCCCCCCCCCCCCcCcCCcceEEeeeeeecCCChHHHHHHHHHhCCeEEEEecCcccccccCCceEeC-CCCCC-
Q 014761 197 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTG-PCSTS- 274 (419)
Q Consensus 197 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~al~~gPV~v~i~~~~~~f~~Y~~Giy~~-~c~~~- 274 (419)
|+++|++|||+. ++.+.+. +|++|++|||+. .|...
T Consensus 81 Gi~~e~~~PY~~----------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~~~~~ 118 (174)
T smart00645 81 GLETESCYPYTG----------------------------------------SVAIDAS--DFQFYKSGIYDHPGCGSGT 118 (174)
T ss_pred CcccccccCccc----------------------------------------EEEEEcc--cccCCcCeEECCCCCCCCc
Confidence 899999999976 4555543 599999999976 47653
Q ss_pred CCeEEEEEEEeec-CCeeEEEEEccCCCCCCCCceEEEEecCCCCCCccccccc
Q 014761 275 LDHAVLIVGYDSE-NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINML 327 (419)
Q Consensus 275 ~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~ 327 (419)
++|+|+|||||.+ +|++|||||||||+.|||+|||||+|+.. +.|||+..
T Consensus 119 ~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~---~~c~i~~~ 169 (174)
T smart00645 119 LDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKN---NECGIEAS 169 (174)
T ss_pred ccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCC---CccCceee
Confidence 7999999999987 88999999999999999999999999752 48999543
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=5.7e-45 Score=340.70 Aligned_cols=194 Identities=36% Similarity=0.561 Sum_probs=166.8
Q ss_pred eeeccCCCCcccccCCCCCCchHHHHHHHHHHHHHHHHhC--CCcccChHHHhhhcCCC----CCCCCCCchHHHHHHHH
Q 014761 120 SIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTG--SLVSLSEQELIDCDRSY----NSGCGGGLMDYAYQFVI 193 (419)
Q Consensus 120 ~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~--~~~~LS~q~l~dc~~~~----~~gC~GG~~~~a~~~~~ 193 (419)
.+|||+.+ ++||+|||.||+|||||+++++|++++++++ +.++||+|+|++|.... ..||.||.+..++.+++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999988 9999999999999999999999999999987 78999999999998753 36999999999998444
Q ss_pred HhCCcCCCCCCCCCCCCCCCCcC---cCCcceEEeeeeeecCCChHHHHHHHHHh-CCeEEEEecCcccccccCCceEe-
Q 014761 194 KNHGIDTEKDYPYRGQAGQCNKQ---KLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFT- 268 (419)
Q Consensus 194 ~~~Gi~~e~~yPY~~~~~~C~~~---~~~~~~~~i~~y~~v~~~~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~~Giy~- 268 (419)
++.|+++|++|||......|... ......+++..|..+...++++||++|.+ |||+|+|.+. ..|..|++|+|.
T Consensus 80 ~~~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~~ 158 (223)
T cd02619 80 ALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIYE 158 (223)
T ss_pred HHcCCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCccccc
Confidence 56699999999999987776532 22345578889998887778999999987 8999999986 689999999862
Q ss_pred -----CCC-CCCCCeEEEEEEEeecC--CeeEEEEEccCCCCCCCCceEEEEecC
Q 014761 269 -----GPC-STSLDHAVLIVGYDSEN--GVDYWIIKNSWGRSWGMNGYMHMQRNT 315 (419)
Q Consensus 269 -----~~c-~~~~~HaV~iVGyg~~~--g~~yWivkNSWG~~WGe~GY~~i~r~~ 315 (419)
..+ ...++|||+|||||++. +++|||||||||+.||++||+||+++.
T Consensus 159 ~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 159 EIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred cccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 122 23579999999999987 899999999999999999999999975
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=3.9e-43 Score=375.41 Aligned_cols=200 Identities=23% Similarity=0.421 Sum_probs=159.1
Q ss_pred cccccCCCCCCchHHHHHHHHHHHHHHHHhCCCcccChHHHhhhcCC-CCCCCCCCchH-HHHHHHHHhCCcCCCCCCCC
Q 014761 129 VTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRS-YNSGCGGGLMD-YAYQFVIKNHGIDTEKDYPY 206 (419)
Q Consensus 129 vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~~~~~LS~q~l~dc~~~-~~~gC~GG~~~-~a~~~~~~~~Gi~~e~~yPY 206 (419)
..||||||.||+|||||+++++|++++|+++..+.||+|||+||+.. .+.||.||+.. .++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 57899999999999999999999999999999999999999999864 36799999754 56688877777999999999
Q ss_pred CC--CCCCCCcCcC-----------------CcceEEeeeeeecCCC----h----HHHHHHHHHh-CCeEEEEecCccc
Q 014761 207 RG--QAGQCNKQKL-----------------NRHIVTIDGYKDVPEN----N----EKQLLQAVVA-QPVSVGICGSERA 258 (419)
Q Consensus 207 ~~--~~~~C~~~~~-----------------~~~~~~i~~y~~v~~~----~----~~~l~~al~~-gPV~v~i~~~~~~ 258 (419)
.. ..+.|+.... ....+.+.+|..+... + +++|+++|++ |||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 4567864321 0112345667655431 1 3578888886 9999999974 6
Q ss_pred ccccC-CceE-eCCCCC-CCCeEEEEEEEeec-----CCeeEEEEEccCCCCCCCCceEEEEecCCCCCCcccccccccc
Q 014761 259 FQLYS-SGIF-TGPCST-SLDHAVLIVGYDSE-----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASY 330 (419)
Q Consensus 259 f~~Y~-~Giy-~~~c~~-~~~HaV~iVGyg~~-----~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~ 330 (419)
|+.|. +||| ...|+. .++|||+|||||.+ .+++|||||||||+.|||+|||||+|+. .+.|||.....+
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g---~n~CGin~i~t~ 778 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYG---PSHCEDNFIHSV 778 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCC---CCCCccchheee
Confidence 88885 8986 556874 57999999999964 2578999999999999999999999943 247998776666
Q ss_pred ccc
Q 014761 331 PTK 333 (419)
Q Consensus 331 p~~ 333 (419)
|+.
T Consensus 779 ~~f 781 (1004)
T PTZ00462 779 VIF 781 (1004)
T ss_pred eeE
Confidence 664
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=326.38 Aligned_cols=264 Identities=26% Similarity=0.440 Sum_probs=204.6
Q ss_pred HHHHHhccCCCCceEEecc-cCCccchHhhhhhhccccCCcccccccCCccccCCCCCCCCCCeeeccCC--CCcccccC
Q 014761 58 AFVTQHNNMGNSSFTLSLN-AFADLTHQEFKASFLGFSAASIDHDRRRNASVQSPGNLRDVPASIDWRKK--GAVTEVKD 134 (419)
Q Consensus 58 ~~I~~~N~~~~~s~~lg~N-~FsDlt~eEf~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~--g~vtpVkd 134 (419)
++|++.|.- +.+|+++.- +|..||.++-.+..||..++... ....+..+.+.+...+||+.||.|++ +++.+|.|
T Consensus 151 d~iE~in~G-~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~s-v~nMNEi~~~l~p~~~LPE~F~As~KWp~liH~plD 228 (470)
T KOG1544|consen 151 DMIEAINQG-NYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSS-VMNMNEIYTVLNPGEVLPEAFEASEKWPNLIHEPLD 228 (470)
T ss_pred HHHHHHhcC-CccccccchhhhhcccccccceeeecccCchhh-hhhHHhHhhccCcccccchhhhhhhcCCccccCccc
Confidence 478888886 788887654 89999999987777887765543 22233333333445789999999987 89999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhCC--CcccChHHHhhhcCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCCCCCC---
Q 014761 135 QASCGACWAFSATGAIEGINKIVTGS--LVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQ--- 209 (419)
Q Consensus 135 Qg~cGsCwAfA~~~~~E~~~~i~~~~--~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~--- 209 (419)
||+|++.|||+++++...+++|.... ...||+|+|++|.....+||+||..+.|+-|+.+. |++...+|||...
T Consensus 229 QgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~~ 307 (470)
T KOG1544|consen 229 QGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQAG 307 (470)
T ss_pred cCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCCCC
Confidence 99999999999999999999887543 45799999999998668899999999999999665 9999999999753
Q ss_pred -CCC------------------CCcCcCC-cceEEeeeeeecCCChHHHHHHHHHhCCeEEEEecCcccccccCCceEeC
Q 014761 210 -AGQ------------------CNKQKLN-RHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTG 269 (419)
Q Consensus 210 -~~~------------------C~~~~~~-~~~~~i~~y~~v~~~~~~~l~~al~~gPV~v~i~~~~~~f~~Y~~Giy~~ 269 (419)
.+. |+....+ ..++..+.-..|..+.++.+++.+.+|||.+.|.+ +++|.+|++|||.+
T Consensus 308 ~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~V-HEDFF~YkgGiY~H 386 (470)
T KOG1544|consen 308 PAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEV-HEDFFLYKGGIYSH 386 (470)
T ss_pred CCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhh-hhhhhhhccceeec
Confidence 122 3332222 24455555445654544445555557999877766 69999999999976
Q ss_pred CCCC---------CCCeEEEEEEEeecC-----CeeEEEEEccCCCCCCCCceEEEEecCCCCCCccccccccc
Q 014761 270 PCST---------SLDHAVLIVGYDSEN-----GVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLAS 329 (419)
Q Consensus 270 ~c~~---------~~~HaV~iVGyg~~~-----g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~ 329 (419)
...+ .+.|+|.|.|||++. ..+|||..||||+.|||+|||||.|+.+ .|-|+++.+
T Consensus 387 ~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvN----ecdIEsfvI 456 (470)
T KOG1544|consen 387 TPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVN----ECDIESFVI 456 (470)
T ss_pred cccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEecccc----chhhhHhhh
Confidence 4332 457999999999873 2579999999999999999999999975 799998754
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-29 Score=244.23 Aligned_cols=195 Identities=28% Similarity=0.416 Sum_probs=132.4
Q ss_pred CCCCCeeeccCCCCcccccCCCCCCchHHHHHHHHHHHHHHHHhCCCcccChHHHhh-----hcCCCCCC-CCCCchHHH
Q 014761 115 RDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELID-----CDRSYNSG-CGGGLMDYA 188 (419)
Q Consensus 115 ~~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~~~E~~~~i~~~~~~~LS~q~l~d-----c~~~~~~g-C~GG~~~~a 188 (419)
..+|+.||||+.|.|+||||||.+|+||||++++++|+.+.-.. ...+|+-.+.. +......+ -+||....+
T Consensus 97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~ 174 (372)
T COG4870 97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMS 174 (372)
T ss_pred ccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCccccc
Confidence 45899999999999999999999999999999999998865433 33444443332 22211221 247888888
Q ss_pred HHHHHHhCCcCCCCCCCCCCCCCCCCcCcCCcceEEeeeeeecCCC----hHHHHHHHHHh-CCeE--EEEecCcccccc
Q 014761 189 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPEN----NEKQLLQAVVA-QPVS--VGICGSERAFQL 261 (419)
Q Consensus 189 ~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~----~~~~l~~al~~-gPV~--v~i~~~~~~f~~ 261 (419)
..|+.+..|.+.|.+-||....-.|.......+.+ ..-..++.. +.-.|++++.. |-++ +.|++. .+..
T Consensus 175 ~a~l~e~sgpv~et~d~y~~~s~~~~~~~p~~k~~--~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~--~~~~ 250 (372)
T COG4870 175 AAYLTEWSGPVYETDDPYSENSYFSPTNLPVTKHV--QEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDAT--NSLG 250 (372)
T ss_pred cccccccCCcchhhcCccccccccCCcCCchhhcc--ccceecccchhhhcccchHHHHhhhccccceeEEecc--cccc
Confidence 88888999999999999998776666533221111 111112111 12235666553 5443 335553 2322
Q ss_pred cCCceEeCCCCCCCCeEEEEEEEeec----------CCeeEEEEEccCCCCCCCCceEEEEecC
Q 014761 262 YSSGIFTGPCSTSLDHAVLIVGYDSE----------NGVDYWIIKNSWGRSWGMNGYMHMQRNT 315 (419)
Q Consensus 262 Y~~Giy~~~c~~~~~HaV~iVGyg~~----------~g~~yWivkNSWG~~WGe~GY~~i~r~~ 315 (419)
..-+.|........+|||+||||||. .|.++||||||||++||++|||||++..
T Consensus 251 ~~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 251 ICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred cccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 33344433333678999999999986 3577999999999999999999999974
No 18
>KOG4296 consensus Epithelin/granulin [Signal transduction mechanisms]
Probab=99.95 E-value=3.4e-29 Score=190.41 Aligned_cols=69 Identities=45% Similarity=1.071 Sum_probs=66.8
Q ss_pred CCCccccCCCCceeccccCCCccccccccCCCCceecCCCCcccCCCCCcccCCCCcccccCCCccceec
Q 014761 349 CSLLTYCAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCLTVSLKFSFTVK 418 (419)
Q Consensus 349 c~~~~~c~~~~tcc~~~~~~~~~~~~~cc~~~~a~cc~d~~~ccp~~~~~c~~~~~~c~~~~~~~~~~~~ 418 (419)
||.+++||+++||||+.+.+|+|.+||||||++||||+|+.||||||||+||+.+++|++++++| +.+|
T Consensus 1 Cd~~~~Cp~~~TCCcl~e~~~~cfsWgCCp~e~A~CCdD~~hCCPh~ypVCD~~~~~Cl~k~ns~-~sik 69 (90)
T KOG4296|consen 1 CDSYTECPDSETCCCLYEYGGYCFSWGCCPMESAVCCDDRSHCCPHGYPVCDLQRSTCLMKKNSP-TSIK 69 (90)
T ss_pred CCcceecCCCCceEEeeecCceeceeccccCCcceeecCCCccCCCCCcccccccceeeccCCCc-ccch
Confidence 88999999999999999999999999999999999999999999999999999999999999998 6765
No 19
>smart00277 GRAN Granulin.
Probab=99.88 E-value=2.3e-23 Score=146.45 Aligned_cols=51 Identities=43% Similarity=1.042 Sum_probs=48.4
Q ss_pred CCccccCCCCceeccccCCCccccccccCCCCceecCCCCcccCCCCCcccCCCCcc
Q 014761 350 SLLTYCAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQC 406 (419)
Q Consensus 350 ~~~~~c~~~~tcc~~~~~~~~~~~~~cc~~~~a~cc~d~~~ccp~~~~~c~~~~~~c 406 (419)
|++++||+++|||++.+ +.||||||++||||+|+.||||+|| +||++.++|
T Consensus 1 d~~~~Cp~~~TCC~~~~-----g~wgCCP~~~AvCC~D~~hCCP~gy-~Cd~~~~~C 51 (51)
T smart00277 1 DSATSCPDGTTCCLLPQ-----GSWGCCPLPNAVCCEDGIHCCPHGY-HCDTDGGTC 51 (51)
T ss_pred CCcccCCCCCeEcCCCC-----CCEECCCCCCCCccCCCCccCCCCC-eeCCCCCcC
Confidence 56889999999999999 7899999999999999999999997 999999987
No 20
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.87 E-value=1.1e-21 Score=199.32 Aligned_cols=179 Identities=24% Similarity=0.362 Sum_probs=126.1
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHHHHH-hCCCcccChHHHhh----------------hcCC-----------CCCCCC
Q 014761 130 TEVKDQASCGACWAFSATGAIEGINKIV-TGSLVSLSEQELID----------------CDRS-----------YNSGCG 181 (419)
Q Consensus 130 tpVkdQg~cGsCwAfA~~~~~E~~~~i~-~~~~~~LS~q~l~d----------------c~~~-----------~~~gC~ 181 (419)
.||+||++-|.||.||+...+|..+..+ ..+.+.||+.+|.- .... .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 3899999999999999999999977764 45679999988754 1100 134578
Q ss_pred CCchHHHHHHHHHhCCcCCCCCCCCCCCC---------------------------CC----------------------
Q 014761 182 GGLMDYAYQFVIKNHGIDTEKDYPYRGQA---------------------------GQ---------------------- 212 (419)
Q Consensus 182 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~---------------------------~~---------------------- 212 (419)
||....+...+. .+|+++.+.||-+... +.
T Consensus 135 GGqw~m~~~li~-KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLIE-KYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHHH-HcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999875 5699999999853110 00
Q ss_pred CCcCcC-------------------------------------------------CcceEEe-----------eeeeecC
Q 014761 213 CNKQKL-------------------------------------------------NRHIVTI-----------DGYKDVP 232 (419)
Q Consensus 213 C~~~~~-------------------------------------------------~~~~~~i-----------~~y~~v~ 232 (419)
|--.++ -.+.+.+ ..|..++
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp 293 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP 293 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC
Confidence 000000 0000111 1223333
Q ss_pred CChHHHHH----HHHHh-CCeEEEEecCcccccccCCceEeCC----------------------CCCCCCeEEEEEEEe
Q 014761 233 ENNEKQLL----QAVVA-QPVSVGICGSERAFQLYSSGIFTGP----------------------CSTSLDHAVLIVGYD 285 (419)
Q Consensus 233 ~~~~~~l~----~al~~-gPV~v~i~~~~~~f~~Y~~Giy~~~----------------------c~~~~~HaV~iVGyg 285 (419)
++.|+ ++|.. +||.+++++. .|+.|++||++.. +.+..+|||+|||||
T Consensus 294 ---~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~ 368 (437)
T cd00585 294 ---MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVD 368 (437)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEE
Confidence 34444 45666 4999999995 4779999999653 233568999999999
Q ss_pred ec-CCe-eEEEEEccCCCCCCCCceEEEEec
Q 014761 286 SE-NGV-DYWIIKNSWGRSWGMNGYMHMQRN 314 (419)
Q Consensus 286 ~~-~g~-~yWivkNSWG~~WGe~GY~~i~r~ 314 (419)
.+ +|+ .||+||||||+.||++||++|+++
T Consensus 369 ~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 369 LDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred ecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 65 476 699999999999999999999875
No 21
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=99.72 E-value=1.7e-18 Score=118.31 Aligned_cols=43 Identities=44% Similarity=1.159 Sum_probs=39.5
Q ss_pred ceeccccCCCccccccccCCCCceecCCCCcccCCCCCcccCCCCcccc
Q 014761 360 TCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCLT 408 (419)
Q Consensus 360 tcc~~~~~~~~~~~~~cc~~~~a~cc~d~~~ccp~~~~~c~~~~~~c~~ 408 (419)
|||.+.+ +.|+||||++||||+|+.||||+|| +||++.++|+|
T Consensus 1 TCC~~~~-----g~~~CCP~~~avCC~D~~hCCP~G~-~C~~~~~~C~k 43 (43)
T PF00396_consen 1 TCCKTPS-----GGYGCCPYPNAVCCSDGKHCCPHGY-TCDPDGGSCIK 43 (43)
T ss_dssp EEEE-TT-----SSEEEEETSSSTTSSTTTTSSSTTS-EEECTTTEEES
T ss_pred CCcccCC-----CCccccCCCCCCccCCCCccCCCcC-EECCCCCEEcC
Confidence 8999998 6699999999999999999999996 99999999986
No 22
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.70 E-value=3e-17 Score=121.53 Aligned_cols=58 Identities=41% Similarity=0.777 Sum_probs=51.9
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHhh
Q 014761 29 FETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEF 86 (419)
Q Consensus 29 f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~FsDlt~eEf 86 (419)
|++|+++|+|.|.+.+|+..|+.||++|+++|++||+.++.+|++|+|+|||||.+||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 8999999999999999999999999999999999996668999999999999999997
No 23
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.60 E-value=1.6e-14 Score=147.15 Aligned_cols=179 Identities=27% Similarity=0.436 Sum_probs=105.5
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHHHHHhC-CCcccChHHHh----------------hhcCC-----------CCCCCC
Q 014761 130 TEVKDQASCGACWAFSATGAIEGINKIVTG-SLVSLSEQELI----------------DCDRS-----------YNSGCG 181 (419)
Q Consensus 130 tpVkdQg~cGsCwAfA~~~~~E~~~~i~~~-~~~~LS~q~l~----------------dc~~~-----------~~~gC~ 181 (419)
.||.||.+-|.||.||+...++..+..+.+ +.+.||+.+|. +.... .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 399999999999999999999998887765 67899998875 22211 123468
Q ss_pred CCchHHHHHHHHHhCCcCCCCCCCCCCC---------------------------CCC----------------------
Q 014761 182 GGLMDYAYQFVIKNHGIDTEKDYPYRGQ---------------------------AGQ---------------------- 212 (419)
Q Consensus 182 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~---------------------------~~~---------------------- 212 (419)
||....+..-+.+ +||++.+.||-+.. .+.
T Consensus 136 GGqw~~~~nli~K-YGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLIKK-YGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHHHH-H---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHH-cCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887755 59999999985421 000
Q ss_pred ----CCcC------cCC---------------------------------------cceEEee-----------eeeecC
Q 014761 213 ----CNKQ------KLN---------------------------------------RHIVTID-----------GYKDVP 232 (419)
Q Consensus 213 ----C~~~------~~~---------------------------------------~~~~~i~-----------~y~~v~ 232 (419)
.+.. ... .+.+.+. .|.++|
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 0000 000 0011110 122232
Q ss_pred CChHHHHH----HHHHhC-CeEEEEecCcccccccCCceEeCCCC----------------------CCCCeEEEEEEEe
Q 014761 233 ENNEKQLL----QAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCS----------------------TSLDHAVLIVGYD 285 (419)
Q Consensus 233 ~~~~~~l~----~al~~g-PV~v~i~~~~~~f~~Y~~Giy~~~c~----------------------~~~~HaV~iVGyg 285 (419)
.+.|+ ++|..| ||..+-++. . +...+.||.+...- +..+|||+|||.+
T Consensus 295 ---id~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~ 369 (438)
T PF03051_consen 295 ---IDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVD 369 (438)
T ss_dssp ---HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEE
Confidence 33444 445667 999999996 3 44668898854321 1348999999999
Q ss_pred e-cCCe-eEEEEEccCCCCCCCCceEEEEec
Q 014761 286 S-ENGV-DYWIIKNSWGRSWGMNGYMHMQRN 314 (419)
Q Consensus 286 ~-~~g~-~yWivkNSWG~~WGe~GY~~i~r~ 314 (419)
. ++|+ .+|+|+||||+..|.+||+.|+..
T Consensus 370 ~D~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 370 LDEDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp E-TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred eccCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 6 5665 699999999999999999999853
No 24
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.56 E-value=5e-15 Score=108.99 Aligned_cols=57 Identities=51% Similarity=0.912 Sum_probs=54.1
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHh
Q 014761 29 FETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQE 85 (419)
Q Consensus 29 f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~FsDlt~eE 85 (419)
|++|+++|+|.|.+.+|+..|+.+|++|++.|+.||+.+..+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 689999999999999999999999999999999999876689999999999999987
No 25
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.56 E-value=3.1e-07 Score=88.65 Aligned_cols=76 Identities=26% Similarity=0.443 Sum_probs=53.1
Q ss_pred HHHHHHHH----HhC-CeEEEEecCcccccccCCceEeCCC-------C---------------CCCCeEEEEEEEee-c
Q 014761 236 EKQLLQAV----VAQ-PVSVGICGSERAFQLYSSGIFTGPC-------S---------------TSLDHAVLIVGYDS-E 287 (419)
Q Consensus 236 ~~~l~~al----~~g-PV~v~i~~~~~~f~~Y~~Giy~~~c-------~---------------~~~~HaV~iVGyg~-~ 287 (419)
++.+|++. ..| +|-.+-++. .+..-+.||.+..- + +-..|||+|.|.+. +
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 45666653 346 888777764 46667777763210 0 01369999999994 4
Q ss_pred CCe-eEEEEEccCCCCCCCCceEEEEe
Q 014761 288 NGV-DYWIIKNSWGRSWGMNGYMHMQR 313 (419)
Q Consensus 288 ~g~-~yWivkNSWG~~WGe~GY~~i~r 313 (419)
+|. --|.|.||||.+=|.+|||-++-
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred CCCceeeEeecccccccCCCceEeehH
Confidence 443 46999999999999999998763
No 26
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.16 E-value=0.005 Score=52.46 Aligned_cols=57 Identities=26% Similarity=0.454 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHhC-CeEEEEecCcccccccCCceEeCCCCCCCCeEEEEEEEeecCCeeEEEEEccC
Q 014761 234 NNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSW 299 (419)
Q Consensus 234 ~~~~~l~~al~~g-PV~v~i~~~~~~f~~Y~~Giy~~~c~~~~~HaV~iVGyg~~~g~~yWivkNSW 299 (419)
.+.+.|++.|.+| ||.+.+....... .+..+. ....+|.|+|+||+++. +++|..+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~---~~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD---GTYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE---E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC---CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 4568899999987 9999987421111 111221 12468999999999843 78888877
No 27
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=96.53 E-value=0.0036 Score=60.96 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=52.7
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHHHHHhC-CCcccChHHHhh--------------------hcCC---------CCCC
Q 014761 130 TEVKDQASCGACWAFSATGAIEGINKIVTG-SLVSLSEQELID--------------------CDRS---------YNSG 179 (419)
Q Consensus 130 tpVkdQg~cGsCwAfA~~~~~E~~~~i~~~-~~~~LS~q~l~d--------------------c~~~---------~~~g 179 (419)
+||.||..-|-||.|+.+..+---+..+-+ ..+.||..+|.- |..- .+.-
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 699999999999999999987544333322 346778777632 1110 1344
Q ss_pred CCCCchHHHHHHHHHhCCcCCCCCCCC
Q 014761 180 CGGGLMDYAYQFVIKNHGIDTEKDYPY 206 (419)
Q Consensus 180 C~GG~~~~a~~~~~~~~Gi~~e~~yPY 206 (419)
-+||....-++.+ +.+|+.+.++||-
T Consensus 143 ~DGGqw~MfvNlV-kKYGviPKkcy~~ 168 (457)
T KOG4128|consen 143 PDGGQWQMFVNLV-KKYGVIPKKCYLH 168 (457)
T ss_pred CCCchHHHHHHHH-HHhCCCcHHhccc
Confidence 6789888877777 4569999999874
No 28
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=96.53 E-value=0.0027 Score=43.25 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=23.7
Q ss_pred HHHHHHhccCCCCceEEecccCCccchHhhhhhhccccC
Q 014761 57 YAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSA 95 (419)
Q Consensus 57 ~~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~ 95 (419)
-++|+.+|+. +.+|++|.| |.+.|.++++.+ +|..+
T Consensus 3 de~I~~IN~~-~~tWkAG~N-F~~~~~~~ik~L-lGv~~ 38 (41)
T PF08127_consen 3 DEFIDYINSK-NTTWKAGRN-FENTSIEYIKRL-LGVLP 38 (41)
T ss_dssp HHHHHHHHHC-T-SEEE-----SSB-HHHHHHC-S-B-T
T ss_pred HHHHHHHHcC-CCcccCCCC-CCCCCHHHHHHH-cCCCC
Confidence 4689999998 999999999 899999988776 67654
No 29
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=95.72 E-value=0.2 Score=45.01 Aligned_cols=118 Identities=15% Similarity=0.236 Sum_probs=66.3
Q ss_pred CCCCCCchHHHHHHHHHHHHH--------HHHhCCCcccChHHHhhhcCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCC
Q 014761 134 DQASCGACWAFSATGAIEGIN--------KIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYP 205 (419)
Q Consensus 134 dQg~cGsCwAfA~~~~~E~~~--------~i~~~~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yP 205 (419)
.||.=+=|-+||.+++|-+.. .|.+.....+|+++|..++. .+...++|.... |....
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~---------~~~~~i~y~ks~-g~~~~---- 83 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL---------TPNQMIKYAKSQ-GRNPQ---- 83 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B----------HHHHHHHHHHT-TEEEE----
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC---------CHHHHHHHHHHc-Ccchh----
Confidence 488889999999999886541 11122245678888877653 345677775332 43210
Q ss_pred CCCCCCCCCcCcCCcceEEeeeeeecCCChHHHHHHHHHh-CCeEEEEecCcccccccCCceEeCCCCCCCCeEEEEEEE
Q 014761 206 YRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGY 284 (419)
Q Consensus 206 Y~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~l~~al~~-gPV~v~i~~~~~~f~~Y~~Giy~~~c~~~~~HaV~iVGy 284 (419)
-....+ +.+++++.+.+ .|+.+..+.... ..+...+|||+||||
T Consensus 84 ---------------------~~n~~~--s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~~~gHAlavvGy 128 (175)
T PF05543_consen 84 ---------------------YNNRMP--SFDEVKKLIDNNKGIAILADRVEQ------------TNGPHAGHALAVVGY 128 (175)
T ss_dssp ---------------------EECS-----HHHHHHHHHTT-EEEEEEEETTS------------CTTB--EEEEEEEEE
T ss_pred ---------------------HhcCCC--CHHHHHHHHHcCCCeEEEeccccc------------CCCCccceeEEEEee
Confidence 001111 35677887776 588776654321 123457899999999
Q ss_pred ee-cCCeeEEEEEccCC
Q 014761 285 DS-ENGVDYWIIKNSWG 300 (419)
Q Consensus 285 g~-~~g~~yWivkNSWG 300 (419)
-. .+|.++.++=|=|-
T Consensus 129 a~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 129 AKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp EEETTSEEEEEEE-TT-
T ss_pred eecCCCCeEEEEeCCcc
Confidence 86 46789999988774
No 30
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=87.65 E-value=1.5 Score=43.05 Aligned_cols=55 Identities=24% Similarity=0.389 Sum_probs=36.3
Q ss_pred HHHHHHHHHhC-CeEEEEecCcccccccCCceEeCCCCCCCCeEEEEEEEeecCCeeEEEEEc
Q 014761 236 EKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKN 297 (419)
Q Consensus 236 ~~~l~~al~~g-PV~v~i~~~~~~f~~Y~~Giy~~~c~~~~~HaV~iVGyg~~~g~~yWivkN 297 (419)
.+.|+++|.+| ||.|.++.. +..|...-|. ....+|.|+|+||++++ ..+.++-+
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~~---~~~~~H~i~v~G~d~~~-~~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYYK---KHHADHYIVVYGYDEEE-DVFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCccccc---cccCCcEEEEEEEeCCC-CEEEEEcC
Confidence 45688888887 999998764 3344433221 12358999999999763 35666533
No 31
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.52 E-value=3.5 Score=37.22 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=35.7
Q ss_pred ecCCChHHHHHHHHHhC-CeEEEEecCcccccccCCceEeCCCCCCCCeEEEEEEEeecCCeeEEEEEccCC
Q 014761 230 DVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWG 300 (419)
Q Consensus 230 ~v~~~~~~~l~~al~~g-PV~v~i~~~~~~f~~Y~~Giy~~~c~~~~~HaV~iVGyg~~~g~~yWivkNSWG 300 (419)
.+...+..+|+.+|..| ||.+-... |.. ..-|+|+|.|||+. ++..-++||
T Consensus 117 d~tGksl~~ik~ql~kg~PV~iw~T~----~~~------------~s~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 117 DLTGKSLSDIKGQLLKGRPVVIWVTN----FHS------------YSIHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred cCcCCcHHHHHHHHhcCCcEEEEEec----ccc------------cceeeeEeeccccc----ceEeccccc
Confidence 34456788999999886 98765432 322 23699999999974 566667775
No 32
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=68.82 E-value=14 Score=31.23 Aligned_cols=44 Identities=27% Similarity=0.420 Sum_probs=28.7
Q ss_pred HHHHHHhC-CeEEEEecCcccccccCCceEeCCCCCCCCeEEEEEEEeecCCeeEEEEEccC
Q 014761 239 LLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSW 299 (419)
Q Consensus 239 l~~al~~g-PV~v~i~~~~~~f~~Y~~Giy~~~c~~~~~HaV~iVGyg~~~g~~yWivkNSW 299 (419)
+++.+..| ||.+.+... + -....+|.|+|+||+. .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~---~-----------~~~~~gH~vVv~g~~~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG---V-----------SITPSGHAMVVIGYDR---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC---c-----------ccCCCCeEEEEEEEcC---CCCEEEECCC
Confidence 66777775 998877541 0 1124689999999982 1235566665
No 33
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=64.04 E-value=22 Score=33.25 Aligned_cols=57 Identities=21% Similarity=0.408 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhC-CeEEEEecCccccccc----CCceEeC---CC----CCCCCeEEEEEEEeecCCeeEEEEEc
Q 014761 235 NEKQLLQAVVAQ-PVSVGICGSERAFQLY----SSGIFTG---PC----STSLDHAVLIVGYDSENGVDYWIIKN 297 (419)
Q Consensus 235 ~~~~l~~al~~g-PV~v~i~~~~~~f~~Y----~~Giy~~---~c----~~~~~HaV~iVGyg~~~g~~yWivkN 297 (419)
..++|...|..| |+.|-+++. . ++ ++-.... .| ....+|-|+|+||+...++ ++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~---~-L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~~--~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS---L-LHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATKE--FEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc---c-ccChhhcccccccccccccCCCCCccEEEEEEEeecCCCCe--EEEeC
Confidence 467888888875 665555543 2 22 2222211 11 1246899999999975432 44444
No 34
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=63.23 E-value=29 Score=34.20 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=24.0
Q ss_pred CCeEEEEEEEeecC--CeeEEEEEccCCC
Q 014761 275 LDHAVLIVGYDSEN--GVDYWIIKNSWGR 301 (419)
Q Consensus 275 ~~HaV~iVGyg~~~--g~~yWivkNSWG~ 301 (419)
.+||=.|++....+ |...-.+||-||.
T Consensus 235 ~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEEccCceEEEEecCCccC
Confidence 48999999998766 8899999999996
No 35
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=54.16 E-value=1.6e+02 Score=26.25 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=25.9
Q ss_pred HHHHHHHHHh-CCeEEEEecCcccccccCCceEeCCCCCCCCeEEEEEEEeec
Q 014761 236 EKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSE 287 (419)
Q Consensus 236 ~~~l~~al~~-gPV~v~i~~~~~~f~~Y~~Giy~~~c~~~~~HaV~iVGyg~~ 287 (419)
.+.+...|.+ ||+-|++..... .-..|+++|.|-+.+
T Consensus 98 ~e~~~~LL~~yGPLwv~~~~P~~---------------~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 98 AEGLANLLREYGPLWVAWEAPGD---------------SWVAHASVITGIDGD 135 (166)
T ss_pred HHHHHHHHHHcCCeEEEecCCCC---------------cceeeEEEEEeecCC
Confidence 4677777775 999998655321 124699999998754
No 36
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=47.43 E-value=22 Score=30.81 Aligned_cols=17 Identities=47% Similarity=1.046 Sum_probs=10.7
Q ss_pred CCCCCCccccCCCCcee
Q 014761 346 PTRCSLLTYCAAGETCC 362 (419)
Q Consensus 346 p~~c~~~~~c~~~~tcc 362 (419)
|..|.....++.+.+||
T Consensus 57 ~~iC~~~~~~~~~~~CC 73 (136)
T PF04885_consen 57 PWICSAKGKCSPGPTCC 73 (136)
T ss_pred chhhcCCCCCCCCCccc
Confidence 44666665666666666
No 37
>cd00206 snake_toxin Snake toxin domain, present in short and long neurotoxins, cytotoxins and short toxins, and in other miscellaneous venom peptides. The toxin acts by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and preventing the binding of acetylcholine, thereby blocking the excitation of muscles. This domain contains 60-75 amino acids that are fixed by 4-5 disulfide bridges and is nearly all beta sheet; it exists as either monomers or dimers.
Probab=42.65 E-value=23 Score=26.31 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=29.6
Q ss_pred CCCccccCCCCceecccc----CCCccccccc---cCCCCceecCCCCcccCCCCCccc
Q 014761 349 CSLLTYCAAGETCCCGSS----ILGICLSWKC---CGFSSAVCCSDHRYCCPSNYPICD 400 (419)
Q Consensus 349 c~~~~~c~~~~tcc~~~~----~~~~~~~~~c---c~~~~a~cc~d~~~ccp~~~~~c~ 400 (419)
|.....||+|++-|-... ..|+=..||| ||-+..- ..+.||..| .||
T Consensus 11 ~~~~~tC~~ge~~Cyk~~~~~~~~g~~i~rGCa~tCP~~~~~---~~v~CC~TD--~CN 64 (64)
T cd00206 11 PFTTETCPDGENICYKKSWKDTPRGVRIERGCAATCPKVKPG---EYVTCCTTD--KCN 64 (64)
T ss_pred CCcceeCCcccCccceeEEEcCCCCCEEEccccCcCcCCCCC---cceEecCCC--CCC
Confidence 445667999888885331 2334467888 7765432 356888877 465
No 38
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=40.19 E-value=28 Score=23.62 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=14.4
Q ss_pred CCCCCCCccccCCCCcee
Q 014761 345 GPTRCSLLTYCAAGETCC 362 (419)
Q Consensus 345 ~p~~c~~~~~c~~~~tcc 362 (419)
.+..|+....||.+.+|=
T Consensus 15 ~~~~C~~~~~CP~~y~C~ 32 (45)
T PF14625_consen 15 QPVSCSPDNSCPSGYSCH 32 (45)
T ss_pred CeeECcCCCCCCCcCEee
Confidence 355898878899999983
No 39
>PF11567 PfUIS3: Plasmodium falciparum UIS3 membrane protein; InterPro: IPR021626 UIS3 is a membrane protein essential for sporozoite development in infected hepatocytes. This family is 130-229 of the Plasmodium falciparum UIS3 protein which is compact and has an all alpha-helical structure.PfUIS3(130-229) interacts with lipids, phospholipid lysosomes, the human liver fatty acid-binding protein and with the lipid phosphatidylethanolamine. The interaction with liver fatty acid-binding protein provides the parasite with a method to import essential fatty acids/lipids during rapid growth phases of sporozoites []. ; PDB: 2VWA_C.
Probab=40.12 E-value=23 Score=28.07 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHhh
Q 014761 46 KQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEF 86 (419)
Q Consensus 46 ~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~FsDlt~eEf 86 (419)
-.+||.+|.+|.+...+| +|++|+.+.-
T Consensus 20 piKrfN~F~Dn~rla~qh-------------HF~~LSn~Qq 47 (101)
T PF11567_consen 20 PIKRFNIFMDNARLAAQH-------------HFSNLSNEQQ 47 (101)
T ss_dssp -HHHHHHHHHHHHHHHHH-------------HHHHS-HHHH
T ss_pred cHHHHHHHHHHHHHHHHH-------------HHHhcCcHHH
Confidence 578999999999987766 5778877753
No 40
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.54 E-value=19 Score=29.19 Aligned_cols=12 Identities=58% Similarity=0.852 Sum_probs=5.4
Q ss_pred CchHHHHHHHHH
Q 014761 1 MNSLAFFLLSIL 12 (419)
Q Consensus 1 M~~~~~~l~~ll 12 (419)
|-+..||||.|+
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 555444444333
No 41
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=30.05 E-value=2.2e+02 Score=25.87 Aligned_cols=51 Identities=33% Similarity=0.500 Sum_probs=29.4
Q ss_pred HHHHHHHHhC-CeEEEEecCcccccccCCceEeCCCCCCCCeEEEEEEEeecCCeeEEEEEccCCCCCCCCceEE
Q 014761 237 KQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMH 310 (419)
Q Consensus 237 ~~l~~al~~g-PV~v~i~~~~~~f~~Y~~Giy~~~c~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~ 310 (419)
+.|+..|.+| ||.+.-... ..+||.+|=||..+ .|+-+==.||-. .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~------------------~~GHawViDGy~~~---~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSK------------------SGGHAWVIDGYDSD---GYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEET------------------TEEEEEEEEEEESS---SEEEEE-SSTTT--T-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecC------------------CCCeEEEEcCccCC---CeEEEeeCccCC--CCCccC
Confidence 4566777764 997653321 11899999999643 566553333322 568875
No 42
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=27.63 E-value=34 Score=19.72 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=9.9
Q ss_pred ccchHhhhhhhcc
Q 014761 80 DLTHQEFKASFLG 92 (419)
Q Consensus 80 Dlt~eEf~~~~lg 92 (419)
-+++++|++++|+
T Consensus 9 p~SNddFrkmfl~ 21 (21)
T PF05391_consen 9 PKSNDDFRKMFLK 21 (21)
T ss_pred ccchHHHHHHHcC
Confidence 4678899998763
No 43
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=25.48 E-value=66 Score=20.66 Aligned_cols=19 Identities=37% Similarity=0.770 Sum_probs=15.0
Q ss_pred CCCCCCCCccccCCCCcee
Q 014761 344 PGPTRCSLLTYCAAGETCC 362 (419)
Q Consensus 344 ~~p~~c~~~~~c~~~~tcc 362 (419)
..+..|.....||.+.+|=
T Consensus 11 ~~~~~C~~~~~CP~g~~C~ 29 (38)
T smart00289 11 GSPVRCSPNGSCPSGYSCQ 29 (38)
T ss_pred CCCeECCCCCCCCCCCEEe
Confidence 3456888888899999985
No 44
>PF13333 rve_2: Integrase core domain
Probab=23.72 E-value=1.4e+02 Score=20.94 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=25.3
Q ss_pred hCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCceEEecccCCccchHhhhhhhc
Q 014761 36 HGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFL 91 (419)
Q Consensus 36 ~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~l 91 (419)
|++.|.+-+|. +..|+ ++|+-+|.+. ++ .||+.||++..|
T Consensus 13 ~~~~~~t~eel--~~~I~----~YI~~yN~~R-------l~---~lsP~eyr~~~l 52 (52)
T PF13333_consen 13 YRQKFKTREEL--KQAID----EYIDYYNNER-------LK---GLSPVEYRNQYL 52 (52)
T ss_pred CCcccchHHHH--HHHHH----HHHHHhccCC-------CC---CcCHHHHHHhhC
Confidence 45567665443 33444 3788888862 22 899999987643
No 45
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=21.01 E-value=43 Score=19.77 Aligned_cols=10 Identities=40% Similarity=1.354 Sum_probs=5.6
Q ss_pred ccc-CCCCcee
Q 014761 375 KCC-GFSSAVC 384 (419)
Q Consensus 375 ~cc-~~~~a~c 384 (419)
||| |||+|.|
T Consensus 1 gccg~ypnaac 11 (26)
T PF07829_consen 1 GCCGPYPNAAC 11 (26)
T ss_dssp --STTSSSSS-
T ss_pred CCccCCCCccc
Confidence 345 6899987
No 46
>PRK00404 tatB sec-independent translocase; Provisional
Probab=20.87 E-value=88 Score=27.28 Aligned_cols=29 Identities=7% Similarity=0.159 Sum_probs=16.9
Q ss_pred CCCCCchhHHHHHHHHHHHhCCccCCHHH
Q 014761 17 LPLNYCSDINELFETWCKQHGKAYSSEQE 45 (419)
Q Consensus 17 ~~~~~~~~~~~~f~~~~~~~~k~Y~~~~E 45 (419)
+.-..-..+.+..-+|..++.|..++..+
T Consensus 20 ~GPkkLP~laR~lG~~i~~~rr~~~~~k~ 48 (141)
T PRK00404 20 LGPERLPGAARTAGLWIGRLKRSFNAIKQ 48 (141)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455666777777777776654433
No 47
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=20.63 E-value=71 Score=19.30 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHHh
Q 014761 2 NSLAFFLLSILLLS 15 (419)
Q Consensus 2 ~~~~~~l~~ll~~~ 15 (419)
+++++.++++++++
T Consensus 8 Kkil~~l~a~~~La 21 (25)
T PF08139_consen 8 KKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHh
Confidence 66766666666544
Done!