Query 014763
Match_columns 419
No_of_seqs 131 out of 360
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 5.7E-86 1.2E-90 641.0 20.6 246 139-415 1-256 (258)
2 PF00651 BTB: BTB/POZ domain; 98.1 6E-06 1.3E-10 68.5 5.8 77 2-86 32-110 (111)
3 smart00225 BTB Broad-Complex, 97.9 1.5E-05 3.2E-10 62.0 5.2 65 2-68 20-84 (90)
4 PHA03098 kelch-like protein; P 97.8 0.00013 2.9E-09 77.3 11.5 140 2-180 32-180 (534)
5 KOG4441 Proteins containing BT 97.3 0.0049 1.1E-07 67.2 14.3 198 2-269 57-260 (571)
6 PHA02713 hypothetical protein; 96.9 0.0036 7.8E-08 67.8 9.3 76 2-87 47-123 (557)
7 PHA02790 Kelch-like protein; P 96.6 0.0025 5.4E-08 67.6 4.9 79 2-87 42-120 (480)
8 PF11822 DUF3342: Domain of un 90.9 0.2 4.2E-06 51.1 3.2 77 3-86 26-103 (317)
9 smart00512 Skp1 Found in Skp1 82.8 2 4.3E-05 36.2 4.3 62 3-66 23-104 (104)
10 KOG2075 Topoisomerase TOP1-int 63.2 51 0.0011 35.8 9.7 151 6-180 144-294 (521)
11 KOG4682 Uncharacterized conser 51.1 23 0.0005 37.7 4.8 77 1-83 88-166 (488)
12 COG3510 CmcI Cephalosporin hyd 45.9 14 0.0003 35.9 2.1 30 360-389 183-214 (237)
13 PF10929 DUF2811: Protein of u 42.0 16 0.00036 28.4 1.6 17 373-389 9-25 (57)
14 PF10264 Stork_head: Winged he 36.8 26 0.00056 29.1 2.0 38 358-395 38-75 (80)
15 PF03931 Skp1_POZ: Skp1 family 36.3 29 0.00063 26.6 2.2 37 3-43 22-58 (62)
16 KOG2016 NEDD8-activating compl 35.9 46 0.001 36.0 4.2 61 329-389 343-433 (523)
17 PF11123 DNA_Packaging_2: DNA 33.5 24 0.00051 29.2 1.3 16 372-387 31-46 (82)
18 KOG0783 Uncharacterized conser 29.5 67 0.0014 37.4 4.3 85 2-114 579-675 (1267)
19 KOG4350 Uncharacterized conser 27.9 78 0.0017 34.0 4.3 80 2-86 65-144 (620)
20 PF14363 AAA_assoc: Domain ass 27.8 37 0.0008 28.6 1.6 28 362-389 29-56 (98)
21 PF01402 RHH_1: Ribbon-helix-h 26.5 70 0.0015 21.8 2.6 34 148-181 5-39 (39)
22 PHA00617 ribbon-helix-helix do 25.8 88 0.0019 26.0 3.4 36 147-182 44-80 (80)
23 PF13764 E3_UbLigase_R4: E3 ub 24.7 43 0.00094 38.6 1.9 50 338-388 277-335 (802)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=5.7e-86 Score=640.95 Aligned_cols=246 Identities=42% Similarity=0.757 Sum_probs=220.1
Q ss_pred CCceehhccccChHHHHHHHHHHHhcCCCchhHHHHHHHhhhhhcCCCccccccccCCCCCCcchhhhhhccCCcccccc
Q 014763 139 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVG 218 (419)
Q Consensus 139 ~dWW~eDl~~L~~~~f~rvI~am~~~g~~~~~i~~~l~~Ya~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (419)
+|||||||+.|++++|+|||.+|+++||+|++||++|+|||+||+|++.++..+.... ....+..
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~---------------~~~~~~~ 65 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSS---------------AESSTSS 65 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccccc---------------ccccchh
Confidence 5899999999999999999999999999999999999999999999985541111100 1223356
Q ss_pred hhhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccccccccccCCCCccccccCCCC
Q 014763 219 QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPE 298 (419)
Q Consensus 219 ~~~qr~llE~iv~LLP~ek~~vsc~FLf~LLR~A~~l~as~~cr~~LE~rIg~qLd~AtldDLLIPs~~~~~~~~~~~~~ 298 (419)
..+||.+||+||+|||.+++++||+|||+|||+|+++|||++||.+||+|||+|||||||||||||+ ++.++
T Consensus 66 ~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~------- 137 (258)
T PF03000_consen 66 ENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGE------- 137 (258)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcc-------
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 33322
Q ss_pred CCcccchHHHHHHHHHHHhhhhhh----------hhhccchhhhhhhhchhhhhhhhcCCCCCChhHHHHHHHhcCCCcc
Q 014763 299 HNTMHNIDVVQRIMDYFLMHEQQQ----------QQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENAR 368 (419)
Q Consensus 299 ~~tlYDVd~V~Ril~~Fl~~~~~~----------~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lPd~AR 368 (419)
+|+||||+|+|||++||.+++.. ...++.+++.+||||||+||+|||+|+||+|+||++|||++|++||
T Consensus 138 -~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR 216 (258)
T PF03000_consen 138 -DTLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSAR 216 (258)
T ss_pred -cchhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhh
Confidence 29999999999999999984321 1125678999999999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHhhccCccccccccchhhHHHHHhhhcccceeee
Q 014763 369 TCHDGLYRAIDTYLKVTYQFFTLFHYFEGKEKQIFQNINSLLSFSVT 415 (419)
Q Consensus 369 ~~hDgLYrAIDiYLk~Hp~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (419)
++|||||||||||||+||+++ ++||+.||++|||.|||..
T Consensus 217 ~~hD~LYrAID~YLk~Hp~ls-------~~Er~~lC~~ldc~KLS~E 256 (258)
T PF03000_consen 217 PSHDGLYRAIDIYLKAHPGLS-------EEERKRLCRLLDCQKLSPE 256 (258)
T ss_pred hccchHHHHHHHHHHHcccCC-------HHHHHHHHhhCCcccCCcc
Confidence 999999999999999999999 9999999999999999964
No 2
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.09 E-value=6e-06 Score=68.53 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=67.0
Q ss_pred ccccHHHHHHcCCC-CCCCccceEecCCCCChHHHHHHHHhhcCCccccC-CcchHHHHhhhhhhcCccccCCCchHHHH
Q 014763 2 SKCGYIARLELQPS-ISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFN-PNNIAPLRCASEFLDMSEEYEDGNLISKT 79 (419)
Q Consensus 2 SrSg~l~rl~~~~~-~~~~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt-~~NVa~LrCAAeyLeMtE~~~~~NL~~~t 79 (419)
++|.||++++.... ......++.+++++ +++|+...+|||+.++.++ ..|+..+...|.+++|.+ |...+
T Consensus 32 ~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~------L~~~~ 103 (111)
T PF00651_consen 32 ARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPE------LKKAC 103 (111)
T ss_dssp HHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHH------HHHHH
T ss_pred ccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHH------HHHHH
Confidence 58999999999883 22233478888887 8899999999999999998 999999999999999995 99999
Q ss_pred HHHhhhh
Q 014763 80 EAFLTLV 86 (419)
Q Consensus 80 E~fL~~~ 86 (419)
+.||.+.
T Consensus 104 ~~~l~~~ 110 (111)
T PF00651_consen 104 EKFLQES 110 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999863
No 3
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.94 E-value=1.5e-05 Score=62.04 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=55.0
Q ss_pred ccccHHHHHHcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCcc
Q 014763 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE 68 (419)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE 68 (419)
++|.++++++...........+.++| ..+++|+.+-+|||+.++.+++.|+..+..+|+|++|.+
T Consensus 20 ~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~ 84 (90)
T smart00225 20 ACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG 84 (90)
T ss_pred hcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence 46899999998654332345677776 579999999999999999999999999999999999985
No 4
>PHA03098 kelch-like protein; Provisional
Probab=97.82 E-value=0.00013 Score=77.29 Aligned_cols=140 Identities=14% Similarity=0.267 Sum_probs=101.4
Q ss_pred ccccHHHHHHcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCccccCCCchHHHHHH
Q 014763 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (419)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NL~~~tE~ 81 (419)
++|.||+.++...-. ..+|+|++ -+++|+.+.+|-|.++++|+..||..|--||.+|+|.+ |....+.
T Consensus 32 a~S~yF~~mf~~~~~---~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~~ 99 (534)
T PHA03098 32 SSSEYFKKMFKNNFK---ENEINLNI---DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCIN 99 (534)
T ss_pred hhhHHHHHHHhCCCC---CceEEecC---CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 579999999975432 35788876 78999999999999999999999999999999999996 9999999
Q ss_pred HhhhhhccChHHHHHHHhhhccccchhhhhh---hHHHHHHHHHHHh---ccCCccccccccCCCceehhccccChHHHH
Q 014763 82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKA---SRENSTTEDIANRQGWWFDDVATLGIDHFM 155 (419)
Q Consensus 82 fL~~~v~~sW~dsi~vL~sce~llp~AE~l~---Iv~RCidsla~ka---~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~ 155 (419)
||.+.+ + ..+|-.++..|+..+ +.+.|.+-|+... +.+ +|...|+.+..+
T Consensus 100 ~l~~~l--~-------~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~---------------~~f~~l~~~~l~ 155 (534)
T PHA03098 100 YIIKII--D-------DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYND---------------PDFIYLSKNELI 155 (534)
T ss_pred HHHHhC--C-------HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcC---------------chhhcCCHHHHH
Confidence 998754 2 234555555565543 5666766665443 211 456678877666
Q ss_pred HHHHHHHhcC--C-CchhHHHHHHHhhh
Q 014763 156 RIITTIKVKG--T-KPEIIGKCIMHYAK 180 (419)
Q Consensus 156 rvI~am~~~g--~-~~~~i~~~l~~Ya~ 180 (419)
.++. +.. + +++.+-++++.+++
T Consensus 156 ~ll~---~~~L~v~~E~~v~~av~~W~~ 180 (534)
T PHA03098 156 KILS---DDKLNVSSEDVVLEIIIKWLT 180 (534)
T ss_pred HHhc---CCCcCcCCHHHHHHHHHHHHh
Confidence 5544 333 2 45567777765553
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.26 E-value=0.0049 Score=67.16 Aligned_cols=198 Identities=16% Similarity=0.290 Sum_probs=131.0
Q ss_pred ccccHHHHHHcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCccccCCCchHHHHHH
Q 014763 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (419)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NL~~~tE~ 81 (419)
+-|.||+-++...-.+....+|+|.+ .-++++++...|+|.++++|+-.||--|--||.+|+|++ +..-.-.
T Consensus 57 a~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~ 128 (571)
T KOG4441|consen 57 ACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCE 128 (571)
T ss_pred hccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHH
Confidence 35789999988533332556899998 779999999999999999999999999999999999997 8888899
Q ss_pred HhhhhhccChHHHH-----HHHhhhccccchhhhhhhHHHHHHHHHHHhccCCccccccccCCCceehhccccChHHHHH
Q 014763 82 FLTLVILSSWKETI-----TVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMR 156 (419)
Q Consensus 82 fL~~~v~~sW~dsi-----~vL~sce~llp~AE~l~Iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~r 156 (419)
||.+-+.. ..++ +-+.+|..|...|.+. |.+...+-. . -||-..||.+.+..
T Consensus 129 fL~~~l~~--~Nclgi~~~a~~~~~~~L~~~a~~~-i~~~F~~v~-----~---------------~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 129 FLESQLDP--SNCLGIRRFAELHSCTELLEVADEY-ILQHFAEVS-----K---------------TEEFLLLSLEELIG 185 (571)
T ss_pred HHHhcCCH--HHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHHh-----c---------------cHHhhCCCHHHHHh
Confidence 99875432 2233 3335676666555432 333333321 1 15555688777666
Q ss_pred HHHHHHhcCCCchhHHHHHHHhhhhhcCCCccccccccCCCCCCcchhhhhhccCCcccccchhhhHHHHHHHHHhCCCC
Q 014763 157 IITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQ 236 (419)
Q Consensus 157 vI~am~~~g~~~~~i~~~l~~Ya~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llE~iv~LLP~e 236 (419)
+|..-.-.--+++.+..+++ +|+..= . ..+++ .+..+|..-
T Consensus 186 ll~~d~l~v~~E~~vf~a~~----~Wv~~d---~----------------------------~~R~~----~~~~ll~~v 226 (571)
T KOG4441|consen 186 LLSSDDLNVDSEEEVFEAAM----RWVKHD---F----------------------------EEREE----HLPALLEAV 226 (571)
T ss_pred hccccCCCcCCHHHHHHHHH----HHHhcC---H----------------------------hhHHH----HHHHHHHhc
Confidence 66553333334555556554 444420 0 00111 222333332
Q ss_pred C-CcccHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 014763 237 D-EGVSCKFFLQMLKMAMVYNASPALISELEKRV 269 (419)
Q Consensus 237 k-~~vsc~FLf~LLR~A~~l~as~~cr~~LE~rI 269 (419)
+ ..++-.||.......-.+...++||.-|..=-
T Consensus 227 r~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 227 RLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred CccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 2 34788999999999999999999998886544
No 6
>PHA02713 hypothetical protein; Provisional
Probab=96.92 E-value=0.0036 Score=67.77 Aligned_cols=76 Identities=17% Similarity=0.354 Sum_probs=63.9
Q ss_pred ccccHHHHHHcCCCC-CCCccceEecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCccccCCCchHHHHH
Q 014763 2 SKCGYIARLELQPSI-SNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE 80 (419)
Q Consensus 2 SrSg~l~rl~~~~~~-~~~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NL~~~tE 80 (419)
+.|.||+.|+...-. +....+|+|.++ .+++|+.+.+|.|.++ ||+.||-.|-.||.+|+|++ |....+
T Consensus 47 a~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~~C~ 116 (557)
T PHA02713 47 AGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDD------LVTDCE 116 (557)
T ss_pred hcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHH------HHHHHH
Confidence 579999999975322 212457899886 5899999999999886 79999999999999999996 999999
Q ss_pred HHhhhhh
Q 014763 81 AFLTLVI 87 (419)
Q Consensus 81 ~fL~~~v 87 (419)
.||.+.+
T Consensus 117 ~~l~~~l 123 (557)
T PHA02713 117 SYIKDYT 123 (557)
T ss_pred HHHHhhC
Confidence 9998855
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=96.58 E-value=0.0025 Score=67.58 Aligned_cols=79 Identities=13% Similarity=0.052 Sum_probs=64.2
Q ss_pred ccccHHHHHHcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCccccCCCchHHHHHH
Q 014763 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (419)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NL~~~tE~ 81 (419)
+-|.|||.|+...-.+ ...+|.+...--.+++++.+.+|-|.++++||..||-.+-.||.+|+|++ ++.....
T Consensus 42 a~S~YFraMF~~~~~E-s~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C~~ 114 (480)
T PHA02790 42 KLSPYFRTHLRQKYTK-NKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTCIN 114 (480)
T ss_pred hcCHHHHHHhcCCccc-cccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHHHH
Confidence 4588999998753222 12245554233458999999999999999999999999999999999996 9999999
Q ss_pred Hhhhhh
Q 014763 82 FLTLVI 87 (419)
Q Consensus 82 fL~~~v 87 (419)
||.+.+
T Consensus 115 fL~~~l 120 (480)
T PHA02790 115 FILRDF 120 (480)
T ss_pred HHHhhC
Confidence 999865
No 8
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=90.89 E-value=0.2 Score=51.13 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=57.4
Q ss_pred cccHHHHHHcC-CCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCccccCCCchHHHHHH
Q 014763 3 KCGYIARLELQ-PSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (419)
Q Consensus 3 rSg~l~rl~~~-~~~~~~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NL~~~tE~ 81 (419)
+=+||+..+.. .+++.....|.|. +-=.-..||.-.++++|-.+.|||.||+.+---++||+|++ |++.+=.
T Consensus 26 ~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------Lve~cl~ 98 (317)
T PF11822_consen 26 EMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------LVEECLQ 98 (317)
T ss_pred hhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------HHHHHHH
Confidence 44688888854 1111122233331 22345799999999999999999999999999999999996 9999999
Q ss_pred Hhhhh
Q 014763 82 FLTLV 86 (419)
Q Consensus 82 fL~~~ 86 (419)
|....
T Consensus 99 y~~~~ 103 (317)
T PF11822_consen 99 YCHDH 103 (317)
T ss_pred HHHHh
Confidence 98653
No 9
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=82.80 E-value=2 Score=36.22 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=41.6
Q ss_pred cccHHHHHHcCCCCCC-CccceEecCCCCChHHHHHHHHhhcCCc---c----------------ccCCcchHHHHhhhh
Q 014763 3 KCGYIARLELQPSISN-LGYDLKLENFPGGSETFEIILKFCYGLP---I----------------AFNPNNIAPLRCASE 62 (419)
Q Consensus 3 rSg~l~rl~~~~~~~~-~~~~i~L~dfPGG~eaFELvakFCYG~~---i----------------~lt~~NVa~LrCAAe 62 (419)
.|+.++.++.+....+ +...|.|++++ +.+++.+.+||+--+ . .+...++--|-.||.
T Consensus 23 ~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAn 100 (104)
T smart00512 23 QSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAAN 100 (104)
T ss_pred HHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHH
Confidence 6889999998654321 22367777776 689999999998321 0 044445666777777
Q ss_pred hhcC
Q 014763 63 FLDM 66 (419)
Q Consensus 63 yLeM 66 (419)
||++
T Consensus 101 yL~I 104 (104)
T smart00512 101 YLDI 104 (104)
T ss_pred hhCC
Confidence 7764
No 10
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=63.21 E-value=51 Score=35.83 Aligned_cols=151 Identities=12% Similarity=0.181 Sum_probs=98.8
Q ss_pred HHHHHHcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCccccCCCchHHHHHHHhhh
Q 014763 6 YIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTL 85 (419)
Q Consensus 6 ~l~rl~~~~~~~~~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NL~~~tE~fL~~ 85 (419)
.+-++...........+|+++|+ -|.+|+---||=|+..+.+.|.||-.+.-+|.= |-.+-|...+-+||+.
T Consensus 144 VFdaMf~g~~a~~~s~ei~lpdv--epaaFl~~L~flYsdev~~~~dtvi~tl~~AkK------Y~VpaLer~CVkflr~ 215 (521)
T KOG2075|consen 144 VFDAMFYGGLAEDASLEIRLPDV--EPAAFLAFLRFLYSDEVKLAADTVITTLYAAKK------YLVPALERQCVKFLRK 215 (521)
T ss_pred HHHHHhccCcccccCceeecCCc--ChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHH------hhhHHHHHHHHHHHHH
Confidence 45555555443323568999976 589999999999999999999999888777642 2234588888899987
Q ss_pred hhccChHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHhccCCccccccccCCCceehhccccChHHHHHHHHHHHhcC
Q 014763 86 VILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKG 165 (419)
Q Consensus 86 ~v~~sW~dsi~vL~sce~llp~AE~l~Iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvI~am~~~g 165 (419)
..+. .....-|-+|-.+ .++=.+.++|++.|.-.. .+.. ..-||-|.-.+ .+.|..|++- .-.+
T Consensus 216 ~l~~--~naf~~L~q~A~l---f~ep~Li~~c~e~id~~~-~~al--------~~EGf~did~~-~dt~~evl~r-~~l~ 279 (521)
T KOG2075|consen 216 NLMA--DNAFLELFQRAKL---FDEPSLISICLEVIDKSF-EDAL--------TPEGFCDIDST-RDTYEEVLRR-DTLE 279 (521)
T ss_pred hcCC--hHHHHHHHHHHHh---hcCHHHHHHHHHHhhhHH-Hhhh--------CccceeehhhH-HHHHHHHHhh-cccc
Confidence 5542 3444455555444 355568999999885332 1111 23477776666 7777776543 1122
Q ss_pred CCchhHHHHHHHhhh
Q 014763 166 TKPEIIGKCIMHYAK 180 (419)
Q Consensus 166 ~~~~~i~~~l~~Ya~ 180 (419)
++.-.+.+++..|++
T Consensus 280 ~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 280 AREFRLFEAALKWAE 294 (521)
T ss_pred hhHHHHHHHHHhhcc
Confidence 455556777766665
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=51.11 E-value=23 Score=37.72 Aligned_cols=77 Identities=9% Similarity=0.121 Sum_probs=63.0
Q ss_pred CccccHHHHHHcCCCCCC--CccceEecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCccccCCCchHHH
Q 014763 1 MSKCGYIARLELQPSISN--LGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISK 78 (419)
Q Consensus 1 ~SrSg~l~rl~~~~~~~~--~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NL~~~ 78 (419)
++.|+||+-|...+-... +...++|+|=--...+|..|-+==|-..|+|.++-|+.+-.||.+|... .|++|
T Consensus 88 L~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqld------gl~qr 161 (488)
T KOG4682|consen 88 LFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLD------GLIQR 161 (488)
T ss_pred eeccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHh------hHHHH
Confidence 457899999988754332 3346788998899999999999999999999999999999999999987 47776
Q ss_pred HHHHh
Q 014763 79 TEAFL 83 (419)
Q Consensus 79 tE~fL 83 (419)
.-.-+
T Consensus 162 C~evM 166 (488)
T KOG4682|consen 162 CGEVM 166 (488)
T ss_pred HHHHH
Confidence 64433
No 12
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=45.92 E-value=14 Score=35.89 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=24.3
Q ss_pred HHhcC--CCccccCCchHHHHHHHHhhccCcc
Q 014763 360 AESLP--ENARTCHDGLYRAIDTYLKVTYQFF 389 (419)
Q Consensus 360 ae~lP--d~AR~~hDgLYrAIDiYLk~Hp~ls 389 (419)
.+-+| +..+..-+|=|+||.-|||.||+=-
T Consensus 183 v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~y 214 (237)
T COG3510 183 VNDLPGPVLPWRFGGGPYEAVEAYLREFPQDY 214 (237)
T ss_pred ccCCCCcccchhcCCChHHHHHHHHHhCCccc
Confidence 34566 6777789999999999999999543
No 13
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=42.02 E-value=16 Score=28.43 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=15.6
Q ss_pred chHHHHHHHHhhccCcc
Q 014763 373 GLYRAIDTYLKVTYQFF 389 (419)
Q Consensus 373 gLYrAIDiYLk~Hp~ls 389 (419)
-||.|+..||+.||+-.
T Consensus 9 ~L~~~m~~fie~hP~WD 25 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNWD 25 (57)
T ss_pred HHHHHHHHHHHcCCCch
Confidence 58999999999999975
No 14
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=36.81 E-value=26 Score=29.12 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=31.5
Q ss_pred HHHHhcCCCccccCCchHHHHHHHHhhccCcccccccc
Q 014763 358 VLAESLPENARTCHDGLYRAIDTYLKVTYQFFTLFHYF 395 (419)
Q Consensus 358 ~Lae~lPd~AR~~hDgLYrAIDiYLk~Hp~ls~~~~~~ 395 (419)
.|.+..|+-++++.|-||.|+..-+|+-.=-....+||
T Consensus 38 ~L~~~yp~i~~Ps~e~l~~~L~~Li~erkIY~tg~GYf 75 (80)
T PF10264_consen 38 HLRKHYPGIAIPSQEVLYNTLGTLIKERKIYHTGEGYF 75 (80)
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHcCceeeCCCceE
Confidence 35668899999999999999999999876655666666
No 15
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=36.30 E-value=29 Score=26.58 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=28.3
Q ss_pred cccHHHHHHcCCCCCCCccceEecCCCCChHHHHHHHHhhc
Q 014763 3 KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCY 43 (419)
Q Consensus 3 rSg~l~rl~~~~~~~~~~~~i~L~dfPGG~eaFELvakFCY 43 (419)
.|+.|+.++......+. .|.|+++. +.+++.+..+|+
T Consensus 22 ~S~~i~~ml~~~~~~~~--~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 22 QSKTIKNMLEDLGDEDE--PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp TSHHHHHHHHCTCCCGT--EEEETTS---HHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhccccc--ccccCccC--HHHHHHHHHHHH
Confidence 58999999987654422 68888765 579999999997
No 16
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=35.90 E-value=46 Score=35.97 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=45.9
Q ss_pred hhhhhhhhchhhhhhhhcCCC----------------CCChhHHHHHHHhcCCCcc-----ccCCc---------hHHHH
Q 014763 329 MGKTNVSKILDNYLAEVARDP----------------NLSITKFQVLAESLPENAR-----TCHDG---------LYRAI 378 (419)
Q Consensus 329 ~~l~~VakLvD~YLaEiA~D~----------------nL~~~kF~~Lae~lPd~AR-----~~hDg---------LYrAI 378 (419)
....+|.+.+-.+|.+++.+| +|++-.|..++|-.-++.+ .+.|. +|||+
T Consensus 343 ~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRav 422 (523)
T KOG2016|consen 343 ADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAV 422 (523)
T ss_pred hhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHH
Confidence 456789999999999999884 4666667778777655544 33444 79999
Q ss_pred HHHHhhccCcc
Q 014763 379 DTYLKVTYQFF 389 (419)
Q Consensus 379 DiYLk~Hp~ls 389 (419)
|.||+.|-.+-
T Consensus 423 drfl~~~gk~p 433 (523)
T KOG2016|consen 423 DRFLKEKGKYP 433 (523)
T ss_pred HHHHHHhcCCC
Confidence 99999997665
No 17
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=33.51 E-value=24 Score=29.18 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=14.0
Q ss_pred CchHHHHHHHHhhccC
Q 014763 372 DGLYRAIDTYLKVTYQ 387 (419)
Q Consensus 372 DgLYrAIDiYLk~Hp~ 387 (419)
=+||-||+.||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 3799999999999963
No 18
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=29.46 E-value=67 Score=37.41 Aligned_cols=85 Identities=22% Similarity=0.424 Sum_probs=54.0
Q ss_pred ccccHHHHHHcCCCCC------------CCccceEecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCccc
Q 014763 2 SKCGYIARLELQPSIS------------NLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEE 69 (419)
Q Consensus 2 SrSg~l~rl~~~~~~~------------~~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE~ 69 (419)
+||..||||+.+-.++ ...++|...|+|| .+||+.-.|-|..+ -+.|+--=-.-|.+- +
T Consensus 579 ~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p--~mfe~lL~~iYtdt-~~~P~heDdidci~f------s 649 (1267)
T KOG0783|consen 579 ARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP--LMFEILLHYIYTDT-LLSPWHEDDIDCIRF------S 649 (1267)
T ss_pred eccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH--HHHHHHHHHHhccc-ccCCccccchhhhhc------c
Confidence 6889999998864432 1356788899984 79999999999765 455521111112111 1
Q ss_pred cCCCchHHHHHHHhhhhhccChHHHHHHHhhhccccchhhhhhhH
Q 014763 70 YEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIV 114 (419)
Q Consensus 70 ~~~~NL~~~tE~fL~~~v~~sW~dsi~vL~sce~llp~AE~l~Iv 114 (419)
..+.|+.+|| |+|+-|.|.+|..+++
T Consensus 650 ~~k~N~~qrt-------------------rtCeMl~~~lekf~l~ 675 (1267)
T KOG0783|consen 650 PLKENLSQRT-------------------RTCEMLANLLEKFHLA 675 (1267)
T ss_pred ccccChhhcc-------------------cHHHHHHHHHhhhhHH
Confidence 2456777744 4677777777766554
No 19
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=27.89 E-value=78 Score=34.04 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=59.3
Q ss_pred ccccHHHHHHcCCCCCCCccceEecCCCCChHHHHHHHHhhcCCccccCCcchHHHHhhhhhhcCccccCCCchHHHHHH
Q 014763 2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81 (419)
Q Consensus 2 SrSg~l~rl~~~~~~~~~~~~i~L~dfPGG~eaFELvakFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NL~~~tE~ 81 (419)
.||.|||.|+...-.+.....|-|. --.+|||-..-|+-|.+++.++-----. --+||+|.-.|+-..|-.-+-.
T Consensus 65 aRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~~~l~~~~ed~---lld~LslAh~Ygf~~Le~aiSe 139 (620)
T KOG4350|consen 65 ARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGKIDLAGVEEDI---LLDYLSLAHRYGFIQLETAISE 139 (620)
T ss_pred HHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhcceecccchHHH---HHHHHHHHHhcCcHHHHHHHHH
Confidence 4899999998853221111233333 2458999999999999999987654433 4589999999998889889999
Q ss_pred Hhhhh
Q 014763 82 FLTLV 86 (419)
Q Consensus 82 fL~~~ 86 (419)
||.++
T Consensus 140 Yl~~i 144 (620)
T KOG4350|consen 140 YLKEI 144 (620)
T ss_pred HHHHH
Confidence 99884
No 20
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=27.81 E-value=37 Score=28.56 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=22.8
Q ss_pred hcCCCccccCCchHHHHHHHHhhccCcc
Q 014763 362 SLPENARTCHDGLYRAIDTYLKVTYQFF 389 (419)
Q Consensus 362 ~lPd~AR~~hDgLYrAIDiYLk~Hp~ls 389 (419)
.+|++.......+|+|+..||.+....+
T Consensus 29 ~I~E~~g~~~N~ly~a~~~YL~s~~s~~ 56 (98)
T PF14363_consen 29 VIPEFDGLSRNELYDAAQAYLSSKISPS 56 (98)
T ss_pred EEEeCCCccccHHHHHHHHHHhhccCcc
Confidence 3566666788899999999999987655
No 21
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=26.52 E-value=70 Score=21.76 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=28.3
Q ss_pred ccChHHHHHHHHHHHhcCC-CchhHHHHHHHhhhh
Q 014763 148 TLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKK 181 (419)
Q Consensus 148 ~L~~~~f~rvI~am~~~g~-~~~~i~~~l~~Ya~~ 181 (419)
.||.+.++++=...+..|+ ..++|-.+|..|+++
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 5788889988888888998 588899999988764
No 22
>PHA00617 ribbon-helix-helix domain containing protein
Probab=25.79 E-value=88 Score=25.98 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=32.3
Q ss_pred cccChHHHHHHHHHHHhcCC-CchhHHHHHHHhhhhh
Q 014763 147 ATLGIDHFMRIITTIKVKGT-KPEIIGKCIMHYAKKW 182 (419)
Q Consensus 147 ~~L~~~~f~rvI~am~~~g~-~~~~i~~~l~~Ya~~~ 182 (419)
..||.++.+++-.-.+..|. ++++|-++|..|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 57999999999999999987 7889999999998876
No 23
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=24.70 E-value=43 Score=38.59 Aligned_cols=50 Identities=28% Similarity=0.470 Sum_probs=36.7
Q ss_pred hhhhhhhhcCCCCCChhHHHHHHHhcCCCc--c-----ccCCchHH-HHHHHHhh-ccCc
Q 014763 338 LDNYLAEVARDPNLSITKFQVLAESLPENA--R-----TCHDGLYR-AIDTYLKV-TYQF 388 (419)
Q Consensus 338 vD~YLaEiA~D~nL~~~kF~~Lae~lPd~A--R-----~~hDgLYr-AIDiYLk~-Hp~l 388 (419)
+|.|=.+-.+|..+.+..|..+++.+|.++ . ..+=|+.. |++ ||+. +|..
T Consensus 277 f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~-YL~~~~P~~ 335 (802)
T PF13764_consen 277 FDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAID-YLLKHFPSL 335 (802)
T ss_pred hhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHH-HHHHhCccc
Confidence 555555677888899999999999999877 2 23446666 888 6655 4765
Done!