Query 014764
Match_columns 419
No_of_seqs 226 out of 1811
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 17:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugo_A RNA polymerase sigma fa 100.0 3.4E-34 1.2E-38 275.5 15.6 207 190-396 6-245 (245)
2 1l9z_H Sigma factor SIGA; heli 100.0 2.6E-32 8.7E-37 282.1 22.3 211 191-401 94-337 (438)
3 2a6h_F RNA polymerase sigma fa 100.0 6.6E-32 2.3E-36 277.8 23.5 221 191-418 79-335 (423)
4 3iyd_F RNA polymerase sigma fa 99.9 3.8E-25 1.3E-29 236.8 -1.6 150 265-418 375-525 (613)
5 1l0o_C Sigma factor; bergerat 99.8 1.7E-20 5.8E-25 172.7 6.0 160 200-400 4-164 (243)
6 1or7_A Sigma-24, RNA polymeras 99.7 1.4E-17 4.7E-22 149.6 12.7 128 264-394 23-184 (194)
7 1rp3_A RNA polymerase sigma fa 99.7 1.4E-16 4.9E-21 146.6 15.7 134 263-399 11-150 (239)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.7 1.2E-18 4.2E-23 155.5 1.3 130 264-394 27-179 (184)
9 1sig_A Sigma70, RNA polymerase 99.7 9.1E-17 3.1E-21 159.8 10.7 74 264-337 265-338 (339)
10 2lfw_A PHYR sigma-like domain; 99.5 1.1E-16 3.6E-21 141.9 -6.9 126 266-394 3-137 (157)
11 3mzy_A RNA polymerase sigma-H 99.5 1.6E-14 5.4E-19 125.2 6.6 106 288-394 1-152 (164)
12 3n0r_A Response regulator; sig 99.4 2.1E-14 7.3E-19 139.4 2.1 124 264-392 21-153 (286)
13 2o7g_A Probable RNA polymerase 99.3 4E-12 1.4E-16 105.8 8.5 73 264-339 24-96 (112)
14 1h3l_A RNA polymerase sigma fa 99.2 3E-11 1E-15 96.1 6.0 75 261-337 9-83 (87)
15 3clo_A Transcriptional regulat 97.6 2.9E-08 9.8E-13 94.6 -16.6 129 263-395 96-241 (258)
16 1l9z_H Sigma factor SIGA; heli 96.5 0.034 1.2E-06 57.4 14.3 45 349-394 379-423 (438)
17 2a6h_F RNA polymerase sigma fa 96.0 0.035 1.2E-06 56.8 11.0 45 349-394 364-408 (423)
18 1rp3_A RNA polymerase sigma fa 95.8 0.2 6.7E-06 45.1 14.0 31 364-394 201-231 (239)
19 3hug_A RNA polymerase sigma fa 95.3 0.0043 1.5E-07 49.6 0.9 31 364-394 51-81 (92)
20 3t72_q RNA polymerase sigma fa 94.0 0.021 7.1E-07 47.2 2.0 30 365-394 38-67 (99)
21 2p7v_B Sigma-70, RNA polymeras 93.4 0.055 1.9E-06 40.6 3.4 30 365-394 24-53 (68)
22 2o8x_A Probable RNA polymerase 93.3 0.0088 3E-07 44.6 -1.3 31 364-394 29-59 (70)
23 1x3u_A Transcriptional regulat 92.4 0.05 1.7E-06 41.5 1.9 33 364-396 29-61 (79)
24 1tty_A Sigma-A, RNA polymerase 92.3 0.075 2.6E-06 42.0 2.8 30 365-394 37-66 (87)
25 1ku3_A Sigma factor SIGA; heli 92.0 0.087 3E-06 40.0 2.8 30 365-394 29-58 (73)
26 1xsv_A Hypothetical UPF0122 pr 92.0 0.038 1.3E-06 46.3 0.8 31 364-394 39-69 (113)
27 1l0o_C Sigma factor; bergerat 91.2 0.039 1.3E-06 49.7 0.0 30 365-394 213-242 (243)
28 2jpc_A SSRB; DNA binding prote 90.3 0.14 4.9E-06 37.0 2.4 32 365-396 12-43 (61)
29 1je8_A Nitrate/nitrite respons 89.6 0.36 1.2E-05 37.7 4.4 33 364-396 34-66 (82)
30 1s7o_A Hypothetical UPF0122 pr 88.9 0.093 3.2E-06 44.1 0.5 29 365-393 37-65 (113)
31 3c57_A Two component transcrip 88.7 0.23 7.8E-06 39.9 2.7 32 365-396 41-72 (95)
32 2rnj_A Response regulator prot 88.1 0.2 6.8E-06 39.7 2.0 32 365-396 43-74 (91)
33 3ulq_B Transcriptional regulat 87.7 0.38 1.3E-05 38.6 3.4 33 365-397 43-75 (90)
34 2jt1_A PEFI protein; solution 86.7 1 3.5E-05 35.4 5.3 28 364-391 22-49 (77)
35 3iyd_F RNA polymerase sigma fa 86.4 0.11 3.9E-06 55.4 -0.6 58 190-277 95-152 (613)
36 1fse_A GERE; helix-turn-helix 86.0 0.77 2.6E-05 34.0 4.1 32 364-395 24-55 (74)
37 1p4w_A RCSB; solution structur 85.3 0.49 1.7E-05 38.7 2.9 32 366-397 49-80 (99)
38 1tc3_C Protein (TC3 transposas 84.0 0.87 3E-05 30.4 3.3 25 366-390 21-45 (51)
39 2x48_A CAG38821; archeal virus 82.7 0.74 2.5E-05 32.6 2.6 25 365-389 30-54 (55)
40 2heo_A Z-DNA binding protein 1 81.6 2.1 7.2E-05 32.2 4.9 32 360-391 19-50 (67)
41 1l3l_A Transcriptional activat 78.1 1.8 6E-05 39.7 4.2 34 364-397 186-219 (234)
42 2q0o_A Probable transcriptiona 77.8 1.1 3.8E-05 41.1 2.7 33 365-397 189-221 (236)
43 3szt_A QCSR, quorum-sensing co 75.4 1.7 6E-05 40.1 3.3 33 365-397 189-221 (237)
44 1qbj_A Protein (double-strande 75.1 5.3 0.00018 31.5 5.6 28 364-391 25-52 (81)
45 1oyi_A Double-stranded RNA-bin 74.2 3.8 0.00013 32.7 4.6 24 367-390 31-54 (82)
46 3k2z_A LEXA repressor; winged 73.4 5.6 0.00019 35.6 6.1 41 350-390 7-48 (196)
47 1qgp_A Protein (double strande 72.5 5.3 0.00018 30.9 5.0 28 364-391 29-56 (77)
48 3qp6_A CVIR transcriptional re 71.4 2.2 7.4E-05 40.4 2.9 32 365-396 211-242 (265)
49 1jhg_A Trp operon repressor; c 71.3 5.1 0.00017 33.2 4.8 27 365-392 57-83 (101)
50 3bpv_A Transcriptional regulat 68.8 23 0.00079 28.5 8.5 27 365-391 42-68 (138)
51 1xn7_A Hypothetical protein YH 68.3 9.4 0.00032 29.9 5.6 27 364-390 14-40 (78)
52 1j5y_A Transcriptional regulat 67.6 11 0.00037 33.5 6.6 40 352-391 22-61 (187)
53 1q1h_A TFE, transcription fact 66.6 7.1 0.00024 31.3 4.7 29 363-391 30-58 (110)
54 1jgs_A Multiple antibiotic res 65.6 28 0.00097 28.0 8.4 66 318-391 8-73 (138)
55 3eco_A MEPR; mutlidrug efflux 64.8 23 0.00077 28.7 7.6 27 365-391 46-72 (139)
56 2w7n_A TRFB transcriptional re 64.7 4.7 0.00016 33.4 3.3 30 364-393 32-61 (101)
57 1lj9_A Transcriptional regulat 63.4 36 0.0012 27.5 8.7 27 365-391 42-68 (144)
58 1uxc_A FRUR (1-57), fructose r 62.9 5.7 0.00019 29.9 3.2 24 367-390 1-24 (65)
59 2htj_A P fimbrial regulatory p 62.8 9.2 0.00032 29.1 4.5 26 365-390 13-38 (81)
60 1jko_C HIN recombinase, DNA-in 62.8 5.7 0.0002 26.6 3.0 23 367-389 22-44 (52)
61 1sfu_A 34L protein; protein/Z- 62.8 6.3 0.00022 31.1 3.5 44 348-392 12-55 (75)
62 3bro_A Transcriptional regulat 62.6 28 0.00097 28.0 7.8 26 366-391 50-75 (141)
63 2pex_A Transcriptional regulat 62.4 31 0.0011 28.4 8.2 65 319-391 22-86 (153)
64 3fm5_A Transcriptional regulat 62.3 22 0.00074 29.4 7.2 66 319-391 14-79 (150)
65 3i4p_A Transcriptional regulat 61.4 8.5 0.00029 33.3 4.6 26 366-391 17-42 (162)
66 3oop_A LIN2960 protein; protei 61.0 36 0.0012 27.7 8.3 27 365-391 50-76 (143)
67 2x4h_A Hypothetical protein SS 60.8 17 0.00059 29.8 6.2 36 355-390 20-55 (139)
68 2fa5_A Transcriptional regulat 60.2 29 0.00099 28.9 7.6 27 365-391 62-88 (162)
69 1zx4_A P1 PARB, plasmid partit 60.0 10 0.00035 34.8 5.0 27 365-391 23-49 (192)
70 2cfx_A HTH-type transcriptiona 59.9 12 0.00042 31.5 5.2 27 365-391 18-44 (144)
71 3deu_A Transcriptional regulat 59.7 28 0.00096 29.7 7.6 66 319-391 28-93 (166)
72 2p5v_A Transcriptional regulat 59.1 12 0.00042 32.1 5.2 30 360-390 19-48 (162)
73 2nnn_A Probable transcriptiona 59.0 46 0.0016 26.6 8.5 26 366-391 52-77 (140)
74 2dbb_A Putative HTH-type trans 58.8 13 0.00046 31.3 5.3 27 365-391 22-48 (151)
75 2k02_A Ferrous iron transport 58.7 13 0.00045 29.8 4.8 27 364-390 14-40 (87)
76 3s2w_A Transcriptional regulat 58.0 42 0.0014 27.9 8.3 67 317-391 23-89 (159)
77 2fbh_A Transcriptional regulat 57.9 41 0.0014 27.1 8.1 28 364-391 50-77 (146)
78 3klo_A Transcriptional regulat 57.5 17 0.0006 32.0 6.1 34 364-397 172-205 (225)
79 2cyy_A Putative HTH-type trans 57.4 14 0.00048 31.3 5.2 25 366-390 21-45 (151)
80 3nrv_A Putative transcriptiona 57.2 28 0.00095 28.5 6.9 26 366-391 54-79 (148)
81 3cjn_A Transcriptional regulat 57.0 28 0.00096 29.0 7.0 27 365-391 65-91 (162)
82 3mn2_A Probable ARAC family tr 56.7 21 0.00072 28.2 5.9 38 353-390 4-42 (108)
83 2rdp_A Putative transcriptiona 56.5 48 0.0017 27.0 8.3 26 366-391 56-81 (150)
84 2e1c_A Putative HTH-type trans 56.5 14 0.00048 32.5 5.2 26 366-391 41-66 (171)
85 2l0k_A Stage III sporulation p 56.0 17 0.00057 29.5 5.1 23 367-389 21-43 (93)
86 2ia0_A Putative HTH-type trans 55.7 15 0.0005 32.3 5.2 32 359-391 25-56 (171)
87 2lnb_A Z-DNA-binding protein 1 55.4 14 0.00048 29.4 4.4 44 346-392 17-60 (80)
88 2cg4_A Regulatory protein ASNC 55.0 16 0.00055 30.9 5.2 27 365-391 21-47 (152)
89 3r0a_A Putative transcriptiona 54.3 17 0.00059 30.0 5.1 32 360-391 35-67 (123)
90 4hbl_A Transcriptional regulat 54.2 42 0.0014 27.7 7.6 26 365-390 54-79 (149)
91 3f2g_A Alkylmercury lyase; MER 54.1 18 0.0006 34.0 5.6 34 363-397 33-66 (220)
92 2qww_A Transcriptional regulat 54.0 37 0.0013 27.9 7.2 27 365-391 54-80 (154)
93 3e6m_A MARR family transcripti 53.9 34 0.0012 28.6 7.1 26 366-391 67-92 (161)
94 1ku9_A Hypothetical protein MJ 53.7 26 0.00089 28.4 6.1 26 365-390 40-65 (152)
95 1on2_A Transcriptional regulat 53.3 20 0.00068 29.6 5.4 27 364-390 20-46 (142)
96 3bj6_A Transcriptional regulat 52.9 38 0.0013 27.7 7.1 26 366-391 54-79 (152)
97 2k9s_A Arabinose operon regula 52.7 25 0.00085 27.8 5.7 38 353-390 5-44 (107)
98 2p5k_A Arginine repressor; DNA 52.5 24 0.00081 25.1 5.0 27 364-390 17-48 (64)
99 2w25_A Probable transcriptiona 52.3 19 0.00065 30.4 5.2 26 365-390 20-45 (150)
100 2d1h_A ST1889, 109AA long hypo 52.3 20 0.00068 27.6 4.9 27 364-390 34-60 (109)
101 2pg4_A Uncharacterized protein 51.5 27 0.00091 27.0 5.6 36 355-390 19-55 (95)
102 3knw_A Putative transcriptiona 51.3 83 0.0028 26.4 9.2 75 231-305 26-101 (212)
103 2elh_A CG11849-PA, LD40883P; s 51.2 14 0.00048 28.7 3.8 25 367-391 39-63 (87)
104 3hsr_A HTH-type transcriptiona 51.2 25 0.00087 28.7 5.7 27 365-391 49-75 (140)
105 2b0l_A GTP-sensing transcripti 51.0 11 0.00038 30.6 3.3 26 365-390 42-67 (102)
106 4ham_A LMO2241 protein; struct 50.8 11 0.00038 31.6 3.4 26 365-390 37-62 (134)
107 2a61_A Transcriptional regulat 50.7 50 0.0017 26.7 7.4 26 366-391 47-72 (145)
108 3oou_A LIN2118 protein; protei 50.6 28 0.00094 27.6 5.6 38 353-390 7-45 (108)
109 3ugo_A RNA polymerase sigma fa 50.5 3.3 0.00011 39.0 0.0 37 226-262 201-239 (245)
110 3bja_A Transcriptional regulat 50.5 34 0.0012 27.4 6.3 27 365-391 46-72 (139)
111 3oio_A Transcriptional regulat 50.3 21 0.00073 28.5 4.9 39 352-390 8-47 (113)
112 3tqn_A Transcriptional regulat 50.1 12 0.00041 30.6 3.4 26 365-390 32-57 (113)
113 3neu_A LIN1836 protein; struct 50.0 15 0.00053 30.5 4.1 27 364-390 35-61 (125)
114 3k0l_A Repressor protein; heli 49.8 40 0.0014 28.3 6.8 67 317-391 19-85 (162)
115 1i1g_A Transcriptional regulat 49.8 23 0.00079 29.2 5.2 25 366-390 18-42 (141)
116 3cdh_A Transcriptional regulat 49.3 40 0.0014 27.8 6.7 27 365-391 56-82 (155)
117 4ev0_A Transcription regulator 49.2 80 0.0027 27.0 8.9 25 367-391 164-188 (216)
118 1z91_A Organic hydroperoxide r 48.9 30 0.001 28.2 5.8 26 366-391 54-79 (147)
119 1y6u_A XIS, excisionase from t 48.9 13 0.00044 28.5 3.2 24 367-390 17-40 (70)
120 2jt1_A PEFI protein; solution 48.5 20 0.00067 28.0 4.2 26 234-259 20-45 (77)
121 1s3j_A YUSO protein; structura 48.3 50 0.0017 27.0 7.1 26 366-391 51-76 (155)
122 3lsg_A Two-component response 48.2 37 0.0013 26.5 6.0 25 366-390 19-43 (103)
123 3kz3_A Repressor protein CI; f 48.0 26 0.0009 26.0 4.8 25 365-389 24-48 (80)
124 2bv6_A MGRA, HTH-type transcri 47.8 28 0.00096 28.3 5.4 26 366-391 51-76 (142)
125 1a04_A Nitrate/nitrite respons 47.6 15 0.0005 32.0 3.8 33 365-397 168-200 (215)
126 1yio_A Response regulatory pro 47.4 22 0.00074 30.6 4.8 34 364-397 155-188 (208)
127 2dt5_A AT-rich DNA-binding pro 47.0 29 0.001 31.8 5.9 49 341-389 2-51 (211)
128 4aik_A Transcriptional regulat 46.8 69 0.0024 26.9 7.9 32 360-391 40-71 (151)
129 2xi8_A Putative transcription 46.6 16 0.00056 25.5 3.3 25 365-389 13-37 (66)
130 2w48_A Sorbitol operon regulat 46.5 23 0.00079 33.9 5.3 28 364-391 19-46 (315)
131 2vn2_A DNAD, chromosome replic 46.5 24 0.00083 29.4 4.8 33 365-397 50-84 (128)
132 3qq6_A HTH-type transcriptiona 45.9 36 0.0012 25.4 5.4 25 365-389 22-46 (78)
133 1tc3_C Protein (TC3 transposas 45.4 58 0.002 20.9 6.1 39 204-259 4-42 (51)
134 3by6_A Predicted transcription 45.1 16 0.00054 30.6 3.4 26 365-390 34-59 (126)
135 2y75_A HTH-type transcriptiona 44.8 49 0.0017 27.1 6.5 28 364-391 24-51 (129)
136 2l8n_A Transcriptional repress 44.4 12 0.00041 28.2 2.3 24 365-388 8-31 (67)
137 1r69_A Repressor protein CI; g 44.4 18 0.00063 25.6 3.3 25 365-389 13-37 (69)
138 2vt3_A REX, redox-sensing tran 44.3 35 0.0012 31.4 6.0 49 341-389 7-56 (215)
139 3kp7_A Transcriptional regulat 44.2 34 0.0012 28.2 5.4 28 364-391 49-76 (151)
140 1zug_A Phage 434 CRO protein; 43.7 19 0.00065 25.6 3.3 25 365-389 15-39 (71)
141 2hr3_A Probable transcriptiona 43.7 66 0.0023 26.0 7.1 28 364-391 48-75 (147)
142 2fbi_A Probable transcriptiona 43.3 45 0.0015 26.8 5.9 26 366-391 50-75 (142)
143 3c3w_A Two component transcrip 43.3 22 0.00075 31.4 4.3 32 366-397 164-195 (225)
144 2ek5_A Predicted transcription 43.2 18 0.00062 30.4 3.5 26 365-390 27-52 (129)
145 3kz9_A SMCR; transcriptional r 43.1 1.4E+02 0.0048 24.6 10.4 77 231-307 29-106 (206)
146 2fmy_A COOA, carbon monoxide o 42.8 87 0.003 27.1 8.2 26 366-391 167-192 (220)
147 3hrs_A Metalloregulator SCAR; 42.4 26 0.00088 31.8 4.7 39 353-391 7-45 (214)
148 3hug_A RNA polymerase sigma fa 42.3 85 0.0029 24.0 7.2 31 240-270 55-85 (92)
149 1jhf_A LEXA repressor; LEXA SO 41.7 49 0.0017 29.2 6.4 30 361-390 20-50 (202)
150 3ppb_A Putative TETR family tr 41.7 1.4E+02 0.0049 24.3 10.5 76 231-306 21-97 (195)
151 3dcf_A Transcriptional regulat 41.6 1.5E+02 0.0053 24.7 10.1 77 231-307 43-120 (218)
152 2pn6_A ST1022, 150AA long hypo 41.5 40 0.0014 28.2 5.5 26 366-391 17-42 (150)
153 1y7y_A C.AHDI; helix-turn-heli 40.9 22 0.00077 25.5 3.3 25 365-389 25-49 (74)
154 1xmk_A Double-stranded RNA-spe 40.9 33 0.0011 26.9 4.4 25 366-390 25-50 (79)
155 1j9i_A GPNU1 DBD;, terminase s 40.8 17 0.00058 26.9 2.7 24 367-390 3-26 (68)
156 3keo_A Redox-sensing transcrip 40.8 29 0.001 32.0 4.8 49 341-389 6-55 (212)
157 1mkm_A ICLR transcriptional re 40.6 45 0.0015 30.7 6.1 34 357-390 14-47 (249)
158 2gxg_A 146AA long hypothetical 40.6 78 0.0027 25.5 7.1 28 364-391 48-75 (146)
159 3dv8_A Transcriptional regulat 40.4 63 0.0022 27.8 6.8 26 366-391 169-194 (220)
160 2h09_A Transcriptional regulat 40.3 44 0.0015 27.9 5.6 27 365-391 53-79 (155)
161 3f8m_A GNTR-family protein tra 40.3 29 0.00098 32.2 4.8 40 351-390 21-60 (248)
162 1v4r_A Transcriptional repress 40.1 8.9 0.0003 30.5 1.0 27 365-391 34-60 (102)
163 3nxc_A HTH-type protein SLMA; 39.9 82 0.0028 26.4 7.4 69 237-305 44-112 (212)
164 2wiu_B HTH-type transcriptiona 39.7 25 0.00084 26.3 3.5 25 365-389 24-48 (88)
165 3bs3_A Putative DNA-binding pr 39.7 24 0.00081 25.5 3.3 25 365-389 22-46 (76)
166 3rd3_A Probable transcriptiona 39.6 1.6E+02 0.0053 24.2 9.1 80 231-310 22-103 (197)
167 3omt_A Uncharacterized protein 39.4 19 0.00065 26.2 2.7 25 365-389 20-44 (73)
168 2v57_A TETR family transcripti 39.3 1.3E+02 0.0044 24.8 8.4 57 237-293 31-87 (190)
169 2a6c_A Helix-turn-helix motif; 39.3 70 0.0024 23.9 6.1 26 364-389 29-54 (83)
170 3mq0_A Transcriptional repress 39.3 36 0.0012 32.1 5.3 42 349-390 28-69 (275)
171 2fu4_A Ferric uptake regulatio 39.3 34 0.0011 25.7 4.2 26 365-390 32-62 (83)
172 2xrn_A HTH-type transcriptiona 39.2 43 0.0015 30.7 5.7 34 358-391 13-46 (241)
173 3b7h_A Prophage LP1 protein 11 39.2 24 0.00083 25.6 3.3 25 365-389 19-43 (78)
174 2b5a_A C.BCLI; helix-turn-heli 39.2 24 0.00083 25.5 3.3 24 365-388 22-45 (77)
175 3qbm_A TETR transcriptional re 38.8 1.6E+02 0.0055 24.1 9.6 77 230-306 18-95 (199)
176 1x57_A Endothelial differentia 38.7 54 0.0019 24.8 5.5 26 364-389 24-49 (91)
177 2g7s_A Transcriptional regulat 38.7 44 0.0015 27.6 5.3 37 350-386 10-48 (194)
178 2wus_R RODZ, putative uncharac 38.7 57 0.002 26.6 5.9 23 365-387 19-41 (112)
179 3cuo_A Uncharacterized HTH-typ 38.6 27 0.00091 26.7 3.6 27 364-390 36-62 (99)
180 1sfx_A Conserved hypothetical 38.4 47 0.0016 25.3 5.1 26 365-390 33-58 (109)
181 1lmb_3 Protein (lambda repress 38.3 42 0.0015 25.3 4.7 25 365-389 29-53 (92)
182 3mkl_A HTH-type transcriptiona 38.2 40 0.0014 27.2 4.8 37 353-389 9-46 (120)
183 3pas_A TETR family transcripti 37.9 1.2E+02 0.004 24.9 7.9 77 231-307 20-97 (195)
184 2r1j_L Repressor protein C2; p 37.6 26 0.00088 24.6 3.2 25 365-389 17-41 (68)
185 2ewt_A BLDD, putative DNA-bind 37.4 30 0.001 24.6 3.6 25 365-389 20-46 (71)
186 3s8q_A R-M controller protein; 37.1 27 0.00092 25.9 3.3 24 365-388 23-46 (82)
187 2k9q_A Uncharacterized protein 37.1 20 0.00069 26.4 2.6 24 365-388 14-37 (77)
188 3t76_A VANU, transcriptional r 36.8 26 0.0009 27.5 3.3 25 365-389 36-60 (88)
189 3jw4_A Transcriptional regulat 36.6 42 0.0014 27.5 4.8 27 365-391 56-82 (148)
190 3ech_A MEXR, multidrug resista 36.6 81 0.0028 25.5 6.6 26 366-391 51-76 (142)
191 1y0u_A Arsenical resistance op 36.5 39 0.0013 26.2 4.3 25 366-390 43-67 (96)
192 2kfs_A Conserved hypothetical 36.5 22 0.00076 31.4 3.1 25 366-390 31-55 (148)
193 3eup_A Transcriptional regulat 36.4 99 0.0034 25.6 7.3 76 233-308 25-101 (204)
194 2ef8_A C.ECOT38IS, putative tr 36.3 28 0.00097 25.6 3.3 24 365-388 22-45 (84)
195 1adr_A P22 C2 repressor; trans 36.3 21 0.00073 25.7 2.6 24 365-388 17-40 (76)
196 2kkm_A Translation machinery-a 36.2 51 0.0017 28.7 5.4 92 191-313 25-121 (144)
197 2cw1_A SN4M; lambda CRO fold, 36.0 30 0.001 26.0 3.4 23 368-390 15-37 (65)
198 3f6w_A XRE-family like protein 35.9 52 0.0018 24.2 4.8 24 365-388 26-49 (83)
199 1bl0_A Protein (multiple antib 35.8 39 0.0013 27.7 4.4 39 352-390 12-51 (129)
200 3he0_A Transcriptional regulat 35.7 1.8E+02 0.006 23.9 8.7 74 231-304 23-97 (196)
201 2qwt_A Transcriptional regulat 35.6 67 0.0023 27.2 6.1 36 351-386 16-52 (196)
202 3g3z_A NMB1585, transcriptiona 35.6 1.3E+02 0.0045 24.2 7.7 26 366-391 45-70 (145)
203 1rzs_A Antirepressor, regulato 35.5 24 0.00081 25.6 2.7 20 368-387 12-31 (61)
204 1p2f_A Response regulator; DRR 35.4 29 0.001 30.1 3.8 36 362-397 160-198 (220)
205 3qkx_A Uncharacterized HTH-typ 35.3 80 0.0027 25.8 6.4 38 349-386 9-48 (188)
206 3u2r_A Regulatory protein MARR 35.1 76 0.0026 26.6 6.3 26 365-390 61-86 (168)
207 2ict_A Antitoxin HIGA; helix-t 35.0 53 0.0018 25.0 4.9 22 367-388 22-43 (94)
208 3kor_A Possible Trp repressor; 34.9 51 0.0017 28.0 5.0 23 366-388 75-97 (119)
209 3bd1_A CRO protein; transcript 34.6 29 0.001 25.7 3.2 23 368-390 13-35 (79)
210 3bdd_A Regulatory protein MARR 34.6 1.7E+02 0.0058 23.1 8.2 26 366-391 45-70 (142)
211 3jsj_A Putative TETR-family tr 34.5 1.9E+02 0.0066 23.7 13.2 78 231-308 21-98 (190)
212 3mky_B Protein SOPB; partition 34.4 55 0.0019 29.9 5.5 46 343-392 23-68 (189)
213 3e97_A Transcriptional regulat 34.2 72 0.0025 27.8 6.2 25 367-391 176-200 (231)
214 2wv0_A YVOA, HTH-type transcri 34.1 41 0.0014 31.0 4.7 27 364-390 32-58 (243)
215 1pb6_A Hypothetical transcript 34.1 74 0.0025 26.7 6.1 46 341-386 11-58 (212)
216 2qvo_A Uncharacterized protein 34.0 76 0.0026 24.4 5.7 27 364-390 28-54 (95)
217 3eus_A DNA-binding protein; st 33.7 34 0.0012 26.0 3.4 25 365-389 26-50 (86)
218 1z4h_A TORI, TOR inhibition pr 33.6 33 0.0011 25.2 3.3 25 366-390 10-34 (66)
219 3h5t_A Transcriptional regulat 33.6 26 0.0009 33.2 3.4 26 364-389 7-32 (366)
220 1u8b_A ADA polyprotein; protei 33.5 40 0.0014 27.7 4.1 39 351-390 79-117 (133)
221 2g7g_A RHA04620, putative tran 33.4 47 0.0016 29.2 4.9 33 353-386 17-49 (213)
222 2eth_A Transcriptional regulat 33.4 43 0.0015 27.7 4.3 26 366-391 58-83 (154)
223 3qkx_A Uncharacterized HTH-typ 33.3 1.9E+02 0.0066 23.4 10.1 76 231-306 20-96 (188)
224 2kpj_A SOS-response transcript 33.3 84 0.0029 24.0 5.8 25 364-388 20-44 (94)
225 3f3x_A Transcriptional regulat 33.2 1.1E+02 0.0037 24.7 6.8 24 368-391 52-75 (144)
226 3bwg_A Uncharacterized HTH-typ 33.1 42 0.0014 30.8 4.6 27 364-390 27-53 (239)
227 2k9l_A RNA polymerase sigma fa 33.1 32 0.0011 26.4 3.2 36 356-391 37-73 (76)
228 3b81_A Transcriptional regulat 33.1 66 0.0023 26.8 5.6 43 341-383 4-48 (203)
229 4ghj_A Probable transcriptiona 33.0 63 0.0021 26.0 5.1 25 364-388 47-71 (101)
230 3f1b_A TETR-like transcription 32.8 2.1E+02 0.007 23.5 10.4 76 231-306 26-102 (203)
231 1ft9_A Carbon monoxide oxidati 32.7 1.2E+02 0.004 26.3 7.3 24 367-390 164-187 (222)
232 1neq_A DNA-binding protein NER 32.6 22 0.00077 27.0 2.2 25 364-388 20-44 (74)
233 2qq9_A Diphtheria toxin repres 32.5 85 0.0029 28.4 6.6 42 349-390 7-48 (226)
234 3jth_A Transcription activator 32.4 35 0.0012 26.3 3.4 26 365-390 35-60 (98)
235 2ofy_A Putative XRE-family tra 32.4 90 0.0031 23.1 5.7 22 368-389 29-50 (86)
236 2fq4_A Transcriptional regulat 32.4 68 0.0023 27.0 5.6 38 349-386 13-52 (192)
237 3tgn_A ADC operon repressor AD 32.3 45 0.0016 27.0 4.3 25 367-391 52-76 (146)
238 3dkw_A DNR protein; CRP-FNR, H 32.3 1.6E+02 0.0055 25.2 8.2 25 367-391 179-203 (227)
239 3kkc_A TETR family transcripti 32.1 57 0.0019 26.7 4.9 37 349-385 13-51 (177)
240 3edp_A LIN2111 protein; APC883 32.0 38 0.0013 31.1 4.1 27 364-390 31-57 (236)
241 3mnl_A KSTR, transcriptional r 31.8 1.2E+02 0.0041 25.1 7.0 77 231-307 32-109 (203)
242 1sgm_A Putative HTH-type trans 31.7 2.1E+02 0.0071 23.2 8.9 77 231-307 18-96 (191)
243 1hw1_A FADR, fatty acid metabo 31.6 31 0.0011 31.0 3.4 26 365-390 30-55 (239)
244 1d5y_A ROB transcription facto 31.5 65 0.0022 29.5 5.7 77 224-379 5-81 (292)
245 2fxa_A Protease production reg 31.5 1.7E+02 0.0059 25.8 8.4 25 366-390 62-86 (207)
246 3g5g_A Regulatory protein; tra 31.4 75 0.0026 25.0 5.3 24 365-388 40-63 (99)
247 3eet_A Putative GNTR-family tr 31.2 47 0.0016 31.3 4.7 27 364-390 51-77 (272)
248 3dcf_A Transcriptional regulat 31.2 82 0.0028 26.5 5.9 37 350-386 33-71 (218)
249 3f1b_A TETR-like transcription 31.1 85 0.0029 26.0 5.9 37 350-386 16-54 (203)
250 3kjx_A Transcriptional regulat 31.1 21 0.00072 33.6 2.2 26 364-389 8-33 (344)
251 3qbm_A TETR transcriptional re 31.0 53 0.0018 27.3 4.5 35 351-385 10-46 (199)
252 2hku_A A putative transcriptio 30.9 2.2E+02 0.0076 24.0 8.8 46 234-279 35-80 (215)
253 4fx0_A Probable transcriptiona 30.9 1.3E+02 0.0046 25.0 7.1 27 365-391 51-77 (148)
254 2qtq_A Transcriptional regulat 30.8 2.3E+02 0.0078 23.5 10.8 76 233-308 30-107 (213)
255 2v79_A DNA replication protein 30.8 25 0.00084 30.1 2.4 34 365-398 50-85 (135)
256 3lwj_A Putative TETR-family tr 30.7 89 0.003 26.0 6.0 39 348-386 12-52 (202)
257 3op9_A PLI0006 protein; struct 30.7 66 0.0023 25.4 4.9 23 366-388 22-44 (114)
258 2zcm_A Biofilm operon icaabcd 30.3 65 0.0022 26.9 5.0 34 353-386 13-47 (192)
259 1wrj_A Methylated-DNA--protein 30.1 40 0.0014 29.8 3.7 66 329-397 49-117 (156)
260 3lhq_A Acrab operon repressor 30.0 88 0.003 26.2 5.9 40 347-386 13-54 (220)
261 1rr7_A Middle operon regulator 29.9 1.1E+02 0.0038 25.8 6.4 28 365-392 91-118 (129)
262 3ppb_A Putative TETR family tr 29.9 87 0.003 25.7 5.7 36 351-386 12-49 (195)
263 3mzy_A RNA polymerase sigma-H 29.9 1.4E+02 0.0048 24.1 7.0 36 237-272 123-158 (164)
264 3col_A Putative transcription 29.8 2E+02 0.0069 23.4 8.1 75 234-308 25-102 (196)
265 3knw_A Putative transcriptiona 29.6 95 0.0033 26.0 6.0 37 350-386 16-54 (212)
266 1pdn_C Protein (PRD paired); p 29.5 40 0.0014 26.6 3.3 25 366-390 33-57 (128)
267 2q24_A Putative TETR family tr 29.4 84 0.0029 26.3 5.6 38 349-386 17-54 (194)
268 1ufm_A COP9 complex subunit 4; 29.4 88 0.003 24.5 5.3 41 359-399 23-67 (84)
269 3bqz_B HTH-type transcriptiona 29.4 67 0.0023 26.5 4.9 35 352-386 6-42 (194)
270 3vk0_A NHTF, transcriptional r 29.3 74 0.0025 25.3 5.0 23 365-387 33-55 (114)
271 1ub9_A Hypothetical protein PH 29.3 42 0.0014 25.5 3.3 26 366-391 30-55 (100)
272 2ao9_A Phage protein; structur 29.2 51 0.0017 29.2 4.2 27 362-388 44-70 (155)
273 2ras_A Transcriptional regulat 29.1 74 0.0025 26.9 5.3 36 350-385 13-50 (212)
274 2oqr_A Sensory transduction pr 29.0 39 0.0013 29.4 3.5 36 362-397 171-211 (230)
275 2o8x_A Probable RNA polymerase 29.0 1.2E+02 0.0041 21.3 5.7 25 240-264 33-57 (70)
276 3gzi_A Transcriptional regulat 29.0 94 0.0032 26.2 5.9 50 338-387 7-58 (218)
277 3trb_A Virulence-associated pr 28.9 42 0.0014 27.0 3.4 25 364-388 25-49 (104)
278 2zb9_A Putative transcriptiona 28.9 78 0.0027 26.9 5.4 37 350-386 25-63 (214)
279 3mn2_A Probable ARAC family tr 28.8 71 0.0024 25.0 4.7 34 228-261 8-41 (108)
280 2f07_A YVDT; helix-turn-helix, 28.4 61 0.0021 27.5 4.6 45 339-383 1-47 (197)
281 2v57_A TETR family transcripti 28.4 73 0.0025 26.3 5.0 36 350-386 16-52 (190)
282 2g7h_A Methylated-DNA--protein 28.4 18 0.0006 32.6 1.1 55 339-396 70-124 (167)
283 2o38_A Hypothetical protein; a 28.4 33 0.0011 28.4 2.7 25 364-388 51-75 (120)
284 1r1u_A CZRA, repressor protein 28.3 50 0.0017 26.1 3.7 25 366-390 39-63 (106)
285 3sxy_A Transcriptional regulat 28.3 46 0.0016 29.7 3.9 27 364-390 33-59 (218)
286 3bqz_B HTH-type transcriptiona 28.2 2.4E+02 0.0083 22.9 9.5 69 231-299 14-83 (194)
287 3fmy_A HTH-type transcriptiona 28.2 31 0.0011 25.5 2.3 24 365-388 23-46 (73)
288 2hku_A A putative transcriptio 28.2 91 0.0031 26.6 5.7 36 351-386 23-59 (215)
289 3bni_A Putative TETR-family tr 28.1 88 0.003 27.2 5.7 39 348-386 43-83 (229)
290 3him_A Probable transcriptiona 28.1 1.9E+02 0.0064 23.9 7.6 75 231-305 28-103 (211)
291 3vib_A MTRR; helix-turn-helix 28.1 79 0.0027 26.8 5.3 37 347-383 9-47 (210)
292 3dpj_A Transcription regulator 28.0 1.1E+02 0.0039 25.2 6.2 46 341-386 2-48 (194)
293 2zkz_A Transcriptional repress 28.0 50 0.0017 25.9 3.7 29 365-393 40-68 (99)
294 3q0w_A HTH-type transcriptiona 28.0 2.6E+02 0.0089 24.1 8.8 75 233-307 58-135 (236)
295 3cec_A Putative antidote prote 28.0 73 0.0025 24.8 4.6 23 366-388 31-53 (104)
296 3dn7_A Cyclic nucleotide bindi 27.9 26 0.0009 29.8 2.1 25 365-389 167-191 (194)
297 2dk5_A DNA-directed RNA polyme 27.8 88 0.003 24.8 5.1 27 364-390 34-60 (91)
298 2gau_A Transcriptional regulat 27.8 1.8E+02 0.0061 25.2 7.7 26 366-391 180-205 (232)
299 2g7s_A Transcriptional regulat 27.8 2.4E+02 0.0083 22.8 8.5 78 231-308 20-98 (194)
300 2gwr_A DNA-binding response re 27.7 46 0.0016 29.4 3.8 36 362-397 168-208 (238)
301 2kko_A Possible transcriptiona 27.7 47 0.0016 26.5 3.5 26 365-390 37-62 (108)
302 2oqg_A Possible transcriptiona 27.6 51 0.0018 25.8 3.7 25 366-390 34-58 (114)
303 3anp_C Transcriptional repress 27.5 89 0.003 26.4 5.5 37 347-383 8-46 (204)
304 2ppx_A AGR_C_3184P, uncharacte 27.5 46 0.0016 25.9 3.3 24 365-388 42-65 (99)
305 2nyx_A Probable transcriptiona 27.5 2.1E+02 0.0073 23.8 7.9 26 366-391 59-84 (168)
306 3crj_A Transcription regulator 27.5 89 0.003 26.5 5.5 37 349-385 15-53 (199)
307 1u78_A TC3 transposase, transp 27.4 42 0.0014 27.2 3.2 25 366-390 22-46 (141)
308 2di3_A Bacterial regulatory pr 27.3 68 0.0023 29.0 4.9 26 365-390 27-52 (239)
309 3e6c_C CPRK, cyclic nucleotide 27.2 1.5E+02 0.005 26.3 7.1 26 366-391 177-202 (250)
310 2lkp_A Transcriptional regulat 27.1 90 0.0031 24.8 5.1 25 366-390 45-69 (119)
311 3b73_A PHIH1 repressor-like pr 26.9 57 0.0019 27.0 3.9 25 366-390 27-53 (111)
312 2hs5_A Putative transcriptiona 26.8 58 0.002 29.7 4.4 27 364-390 49-75 (239)
313 4a0z_A Transcription factor FA 26.6 89 0.003 28.1 5.5 24 364-387 24-47 (190)
314 3ihu_A Transcriptional regulat 26.6 60 0.0021 29.0 4.4 27 364-390 37-63 (222)
315 3g1o_A Transcriptional regulat 26.5 2.5E+02 0.0086 24.5 8.6 74 234-307 58-134 (255)
316 2oz6_A Virulence factor regula 26.5 45 0.0015 28.4 3.4 25 367-391 165-189 (207)
317 3oio_A Transcriptional regulat 26.3 67 0.0023 25.4 4.2 32 230-261 15-46 (113)
318 3p7n_A Sensor histidine kinase 26.3 57 0.002 28.9 4.1 32 366-397 213-244 (258)
319 3mlf_A Transcriptional regulat 26.3 51 0.0017 26.5 3.5 25 365-389 35-59 (111)
320 1vi0_A Transcriptional regulat 26.2 2.7E+02 0.0091 23.5 8.4 67 231-297 20-87 (206)
321 1b0n_A Protein (SINR protein); 26.1 50 0.0017 25.7 3.3 25 365-389 13-37 (111)
322 3bni_A Putative TETR-family tr 26.1 3.1E+02 0.011 23.5 9.8 78 231-308 55-135 (229)
323 2g7u_A Transcriptional regulat 26.0 55 0.0019 30.2 4.1 39 352-390 12-53 (257)
324 2rek_A Putative TETR-family tr 25.8 82 0.0028 26.4 4.9 40 347-386 15-55 (199)
325 3boq_A Transcriptional regulat 25.8 71 0.0024 26.3 4.4 27 364-390 60-86 (160)
326 3on4_A Transcriptional regulat 25.8 2.7E+02 0.0091 22.6 8.9 69 231-299 22-92 (191)
327 2pij_A Prophage PFL 6 CRO; tra 25.7 53 0.0018 23.3 3.1 28 368-396 15-42 (67)
328 2fbk_A Transcriptional regulat 25.6 82 0.0028 26.9 4.9 25 366-390 86-110 (181)
329 2ibd_A Possible transcriptiona 25.5 2.9E+02 0.01 23.0 9.4 75 230-304 25-100 (204)
330 2l1p_A DNA-binding protein SAT 25.5 57 0.002 26.1 3.4 24 366-389 32-55 (83)
331 3he0_A Transcriptional regulat 25.4 88 0.003 25.8 5.0 35 351-385 14-50 (196)
332 3lsg_A Two-component response 25.2 91 0.0031 24.1 4.7 32 230-261 10-42 (103)
333 3oou_A LIN2118 protein; protei 25.2 90 0.0031 24.4 4.7 34 228-261 11-44 (108)
334 3vp5_A Transcriptional regulat 25.1 96 0.0033 26.1 5.2 37 347-383 11-49 (189)
335 3f0c_A TETR-molecule A, transc 25.0 3E+02 0.01 22.9 9.8 76 231-306 23-99 (216)
336 2qwt_A Transcriptional regulat 24.9 2.6E+02 0.0089 23.3 8.1 49 230-278 24-72 (196)
337 3pas_A TETR family transcripti 24.8 51 0.0018 27.1 3.3 37 350-386 10-48 (195)
338 2eh3_A Transcriptional regulat 24.8 99 0.0034 25.5 5.2 35 352-386 6-42 (179)
339 2zcw_A TTHA1359, transcription 24.8 51 0.0018 28.2 3.4 25 367-391 147-171 (202)
340 3f2g_A Alkylmercury lyase; MER 24.8 49 0.0017 30.9 3.4 27 235-261 33-59 (220)
341 1u2w_A CADC repressor, cadmium 24.7 57 0.002 26.6 3.5 26 365-390 55-80 (122)
342 3vpr_A Transcriptional regulat 24.5 99 0.0034 25.7 5.2 35 352-386 7-43 (190)
343 3bru_A Regulatory protein, TET 24.5 1.4E+02 0.0047 25.2 6.2 39 348-386 30-70 (222)
344 1sgm_A Putative HTH-type trans 24.5 49 0.0017 27.2 3.2 36 351-386 9-46 (191)
345 3t8r_A Staphylococcus aureus C 24.4 60 0.002 27.6 3.7 27 365-391 27-53 (143)
346 1eto_A FIS, factor for inversi 24.3 2.7E+02 0.0093 22.2 8.6 22 368-389 73-94 (98)
347 3rd3_A Probable transcriptiona 24.3 82 0.0028 26.0 4.6 35 351-385 13-49 (197)
348 3dew_A Transcriptional regulat 24.3 93 0.0032 25.7 4.9 38 349-386 10-48 (206)
349 3kz9_A SMCR; transcriptional r 24.2 1.8E+02 0.0062 23.9 6.8 39 348-386 17-57 (206)
350 2l49_A C protein; P2 bacteriop 24.2 55 0.0019 25.0 3.2 24 365-388 16-39 (99)
351 2r0q_C Putative transposon TN5 24.1 3.3E+02 0.011 23.9 8.9 23 366-388 175-197 (209)
352 2ibd_A Possible transcriptiona 24.0 1.1E+02 0.0037 25.9 5.4 38 349-386 15-54 (204)
353 3col_A Putative transcription 24.0 60 0.0021 26.7 3.6 35 351-385 13-49 (196)
354 3ivp_A Putative transposon-rel 23.9 60 0.0021 26.2 3.5 25 365-389 24-48 (126)
355 2eby_A Putative HTH-type trans 23.9 57 0.0019 25.8 3.3 26 364-389 22-47 (113)
356 2o7t_A Transcriptional regulat 23.8 1.1E+02 0.0039 25.5 5.5 46 341-386 1-48 (199)
357 3cdl_A Transcriptional regulat 23.8 1.2E+02 0.0041 25.6 5.6 35 351-385 12-48 (203)
358 2hin_A GP39, repressor protein 23.8 47 0.0016 25.4 2.6 21 368-388 12-32 (71)
359 2jn6_A Protein CGL2762, transp 23.8 65 0.0022 24.9 3.6 26 366-391 23-48 (97)
360 2wui_A MEXZ, transcriptional r 23.7 1.1E+02 0.0037 26.1 5.3 36 351-386 14-51 (210)
361 1r71_A Transcriptional repress 23.7 74 0.0025 28.4 4.3 26 366-391 52-77 (178)
362 1rkt_A Protein YFIR; transcrip 23.4 1.2E+02 0.0039 25.7 5.4 37 347-383 11-49 (205)
363 1kgs_A DRRD, DNA binding respo 23.4 55 0.0019 28.3 3.3 35 362-396 166-205 (225)
364 3k2z_A LEXA repressor; winged 23.4 1.5E+02 0.005 26.1 6.3 27 233-259 19-45 (196)
365 3ryp_A Catabolite gene activat 23.3 55 0.0019 27.9 3.3 25 367-391 168-192 (210)
366 1k78_A Paired box protein PAX5 23.2 58 0.002 27.0 3.3 26 366-391 48-73 (149)
367 3cwr_A Transcriptional regulat 23.1 1.3E+02 0.0044 24.9 5.6 39 348-386 17-57 (208)
368 2xdn_A HTH-type transcriptiona 23.1 79 0.0027 26.8 4.3 37 347-383 10-48 (210)
369 3nxc_A HTH-type protein SLMA; 23.0 70 0.0024 26.8 3.9 35 351-385 27-64 (212)
370 1p4w_A RCSB; solution structur 23.0 2.8E+02 0.0096 21.9 7.5 43 201-261 30-72 (99)
371 2iu5_A DHAS, YCEG, HTH-type dh 23.0 57 0.002 27.5 3.3 35 351-385 16-52 (195)
372 2k9s_A Arabinose operon regula 22.9 97 0.0033 24.2 4.5 33 229-261 10-43 (107)
373 3c7j_A Transcriptional regulat 22.9 58 0.002 29.8 3.5 27 364-390 47-73 (237)
374 1y9q_A Transcriptional regulat 22.8 93 0.0032 26.9 4.7 24 365-388 23-46 (192)
375 1fx7_A Iron-dependent represso 22.8 1.3E+02 0.0046 27.0 6.0 39 352-390 10-48 (230)
376 3bhq_A Transcriptional regulat 22.6 1.6E+02 0.0054 25.0 6.2 37 350-386 14-52 (211)
377 1bia_A BIRA bifunctional prote 22.5 1E+02 0.0036 29.5 5.5 29 363-391 16-44 (321)
378 3egq_A TETR family transcripti 22.5 77 0.0026 25.8 4.0 37 350-386 6-44 (170)
379 3mvp_A TETR/ACRR transcription 22.5 1.3E+02 0.0045 25.1 5.6 49 338-386 17-66 (217)
380 3rh2_A Hypothetical TETR-like 22.5 3.4E+02 0.011 22.7 8.3 76 231-307 15-91 (212)
381 3kcc_A Catabolite gene activat 22.5 1.9E+02 0.0065 25.9 7.0 25 367-391 218-242 (260)
382 3qwg_A ESX-1 secretion-associa 22.4 57 0.002 27.2 3.1 17 368-384 61-77 (123)
383 3kxa_A NGO0477 protein, putati 22.4 67 0.0023 27.1 3.6 25 365-389 80-104 (141)
384 3c2b_A Transcriptional regulat 22.4 1.2E+02 0.004 25.8 5.3 38 350-387 17-56 (221)
385 2qtq_A Transcriptional regulat 22.3 1.2E+02 0.004 25.4 5.2 37 350-386 18-56 (213)
386 1ylf_A RRF2 family protein; st 22.1 51 0.0017 28.0 2.8 28 364-391 28-55 (149)
387 3ni7_A Bacterial regulatory pr 22.1 3.4E+02 0.011 23.4 8.4 77 230-306 18-95 (213)
388 3o9x_A Uncharacterized HTH-typ 22.1 81 0.0028 25.7 4.0 25 365-389 83-107 (133)
389 2ia2_A Putative transcriptiona 22.0 62 0.0021 30.1 3.6 40 351-390 18-60 (265)
390 3s5r_A Transcriptional regulat 22.0 3.4E+02 0.012 22.5 10.2 77 231-307 22-100 (216)
391 3ni7_A Bacterial regulatory pr 21.8 1.3E+02 0.0045 26.2 5.6 36 351-386 10-47 (213)
392 1s7o_A Hypothetical UPF0122 pr 21.8 3.1E+02 0.011 22.2 7.5 29 240-268 40-68 (113)
393 2ras_A Transcriptional regulat 21.8 2.8E+02 0.0097 23.1 7.7 74 231-304 23-97 (212)
394 3fx3_A Cyclic nucleotide-bindi 21.7 55 0.0019 28.7 3.0 25 367-391 179-203 (237)
395 3aqt_A Bacterial regulatory pr 21.6 2.5E+02 0.0085 24.5 7.5 69 231-299 58-127 (245)
396 3d0s_A Transcriptional regulat 21.6 66 0.0022 28.0 3.5 26 366-391 177-202 (227)
397 2jml_A DNA binding domain/tran 21.5 58 0.002 24.7 2.8 23 367-389 6-28 (81)
398 3bhq_A Transcriptional regulat 21.5 3.6E+02 0.012 22.6 9.7 52 230-281 23-75 (211)
399 2rae_A Transcriptional regulat 21.4 1.4E+02 0.0049 24.9 5.6 36 351-386 20-57 (207)
400 3b02_A Transcriptional regulat 21.3 54 0.0019 28.0 2.9 25 367-391 140-164 (195)
401 3pqk_A Biofilm growth-associat 21.3 59 0.002 25.3 2.8 26 365-390 35-60 (102)
402 3mkl_A HTH-type transcriptiona 21.3 90 0.0031 25.0 4.1 32 230-261 15-46 (120)
403 2o0y_A Transcriptional regulat 21.2 57 0.002 30.2 3.2 40 351-390 20-62 (260)
404 2glo_A Brinker CG9653-PA; prot 21.2 62 0.0021 22.9 2.7 20 369-388 28-47 (59)
405 3on4_A Transcriptional regulat 21.2 86 0.003 25.7 4.1 37 350-386 12-50 (191)
406 3lwf_A LIN1550 protein, putati 21.2 64 0.0022 28.1 3.3 27 365-391 43-69 (159)
407 3lfp_A CSP231I C protein; tran 21.2 62 0.0021 25.0 2.9 25 365-389 13-41 (98)
408 2lfc_A Fumarate reductase, fla 21.1 65 0.0022 27.7 3.3 25 366-390 95-119 (160)
409 3s5r_A Transcriptional regulat 21.1 1.2E+02 0.0042 25.3 5.1 36 351-386 13-50 (216)
410 3g7r_A Putative transcriptiona 21.1 1.5E+02 0.005 25.5 5.7 39 348-386 35-75 (221)
411 2hyt_A TETR-family transcripti 21.1 93 0.0032 26.2 4.3 37 347-383 11-49 (197)
412 3iwz_A CAP-like, catabolite ac 21.1 64 0.0022 27.9 3.3 25 367-391 188-212 (230)
413 2oi8_A Putative regulatory pro 21.0 1.7E+02 0.0058 25.4 6.2 38 348-385 16-55 (216)
414 2qko_A Possible transcriptiona 20.9 84 0.0029 26.8 4.0 38 349-386 29-68 (215)
415 3f52_A CLP gene regulator (CLG 20.8 57 0.0019 25.9 2.7 24 365-388 40-63 (117)
416 3fym_A Putative uncharacterize 20.8 62 0.0021 26.9 3.0 24 365-388 15-38 (130)
417 1zyb_A Transcription regulator 20.8 66 0.0022 28.3 3.4 25 367-391 187-211 (232)
418 2bnm_A Epoxidase; oxidoreducta 20.8 1.1E+02 0.0038 26.4 4.8 25 365-389 22-46 (198)
419 3ccy_A Putative TETR-family tr 20.7 3.6E+02 0.012 22.3 8.2 68 231-298 26-94 (203)
420 1xsv_A Hypothetical UPF0122 pr 20.6 3E+02 0.01 22.2 7.1 31 240-270 43-73 (113)
421 2fjr_A Repressor protein CI; g 20.4 1E+02 0.0034 26.5 4.4 22 368-389 22-43 (189)
422 3r1f_A ESX-1 secretion-associa 20.3 65 0.0022 27.2 3.1 15 369-383 64-78 (135)
423 2fd5_A Transcriptional regulat 20.2 97 0.0033 25.4 4.2 42 342-383 1-44 (180)
424 2vxz_A Pyrsv_GP04; viral prote 20.2 1.4E+02 0.0049 26.5 5.3 26 364-389 22-47 (165)
425 3jsj_A Putative TETR-family tr 20.2 1.6E+02 0.0054 24.3 5.5 36 351-386 12-48 (190)
426 1t6s_A Conserved hypothetical 20.2 2.1E+02 0.0071 25.3 6.4 28 363-390 19-48 (162)
427 3ccy_A Putative TETR-family tr 20.1 70 0.0024 27.0 3.3 36 350-385 16-53 (203)
428 3bru_A Regulatory protein, TET 20.1 3.8E+02 0.013 22.3 11.1 72 238-309 50-122 (222)
429 1nd9_A Translation initiation 20.1 60 0.0021 21.9 2.3 25 367-391 3-27 (49)
430 2gen_A Probable transcriptiona 20.1 1.3E+02 0.0044 25.3 5.0 35 349-383 9-44 (197)
No 1
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=3.4e-34 Score=275.48 Aligned_cols=207 Identities=31% Similarity=0.523 Sum_probs=129.6
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcchhHHHHH---HHh-----------------------hCCCCchHH
Q 014764 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL---KER-----------------------LGCEPSMEQ 243 (419)
Q Consensus 190 ~~~l~~yl~~i~~~~lLt~~eE~eL~rkik~Gd~l~~~~~~l---~~~-----------------------lg~~p~~~e 243 (419)
.|.+++||++|+++|+||+++|++|+++|..|..+.+....- ... .+.+|+..+
T Consensus 6 ~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~ 85 (245)
T 3ugo_A 6 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVE 85 (245)
T ss_dssp CHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHHH
T ss_pred CCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhHH
Confidence 478999999999999999999999999999997633222110 000 147889999
Q ss_pred HHHHhcCChH----HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhh
Q 014764 244 LAASLRISRP----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 319 (419)
Q Consensus 244 ~A~~~~~s~~----eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFST 319 (419)
||.+.+++.. +|...+..+..||+.||++|.++|+++|++|.+++.+++||+||||+|||+++++||+.+|++|+|
T Consensus 86 ~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~t 165 (245)
T 3ugo_A 86 EVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFST 165 (245)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHH
T ss_pred HHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHHH
Confidence 9999888754 444556678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhcccccCccchHHHHHHHHHHHHHHH-hcCCCccHHHHHHHcC--CCHHHHHHHHHHhCccccc
Q 014764 320 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVFSL 396 (419)
Q Consensus 320 Ya~~~Irn~I~~~Lrd~~r~irip~~l~e~~~~I~~a~~~L~-e~gRepS~eEIAe~LG--IS~etVr~~l~rark~lSL 396 (419)
|++|||++.|.++++++.+.+++|.++.+...++.++...|. .+++.||++|||+.|| ||+++|++++.++++++||
T Consensus 166 ya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~lsl 245 (245)
T 3ugo_A 166 YATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSL 245 (245)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccCC
Confidence 999999999999999999889999999999999999998885 5799999999999999 9999999999999999886
No 2
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=2.6e-32 Score=282.13 Aligned_cols=211 Identities=31% Similarity=0.513 Sum_probs=187.2
Q ss_pred hhHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcchhHHH------------------HHHHhhCCCCchHHHHH------
Q 014764 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL------------------RLKERLGCEPSMEQLAA------ 246 (419)
Q Consensus 191 ~~l~~yl~~i~~~~lLt~~eE~eL~rkik~Gd~l~~~~~------------------~l~~~lg~~p~~~e~A~------ 246 (419)
|.+..||++|.++|+||++||++|+++++.|..+.+... .....+++.|+.++|+.
T Consensus 94 d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (438)
T 1l9z_H 94 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEE 173 (438)
T ss_pred ChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchhhhh
Confidence 678899999999999999999999999999965433221 11224667888777632
Q ss_pred ------HhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhhH
Q 014764 247 ------SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320 (419)
Q Consensus 247 ------~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTY 320 (419)
+++++..+|...+..+..|++.||..|+++|+++|++|.+++.+++|||||||||||+|+++|||.+|++|+||
T Consensus 174 ~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsTY 253 (438)
T 1l9z_H 174 VDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTY 253 (438)
T ss_pred hhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHHH
Confidence 24567788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHhcccccCccchHHHHHHHHHHHHHHH-hcCCCccHHHHHHHcC--CCHHHHHHHHHHhCcccccc
Q 014764 321 VYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 321 a~~~Irn~I~~~Lrd~~r~irip~~l~e~~~~I~~a~~~L~-e~gRepS~eEIAe~LG--IS~etVr~~l~rark~lSLD 397 (419)
++|||++.|.++++++.+.+++|.++.+.+++++++...+. .+++.|+.+|||+.|| ++.++|..++..+...+|||
T Consensus 254 A~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~SLd 333 (438)
T 1l9z_H 254 ATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLE 333 (438)
T ss_pred HHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999988884 6899999999999999 99999999998888899999
Q ss_pred cccC
Q 014764 398 REAF 401 (419)
Q Consensus 398 ~~~~ 401 (419)
.++.
T Consensus 334 ~~~~ 337 (438)
T 1l9z_H 334 TPIG 337 (438)
T ss_pred cccc
Confidence 8773
No 3
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=6.6e-32 Score=277.84 Aligned_cols=221 Identities=31% Similarity=0.512 Sum_probs=190.5
Q ss_pred hhHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcchhHHHHHHHh---------------------hCCCCchHH------
Q 014764 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKER---------------------LGCEPSMEQ------ 243 (419)
Q Consensus 191 ~~l~~yl~~i~~~~lLt~~eE~eL~rkik~Gd~l~~~~~~l~~~---------------------lg~~p~~~e------ 243 (419)
+.++.||++|++.|+||++||.+|+++++.|+.+.+ .|.+. +++.|+.++
T Consensus 79 d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (423)
T 2a6h_F 79 DPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIK---KLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKT 155 (423)
T ss_dssp HHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHH
T ss_pred cHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHH---HHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhh
Confidence 688999999999999999999999999999865332 23322 345555332
Q ss_pred ---HH---HHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCch
Q 014764 244 ---LA---ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKI 317 (419)
Q Consensus 244 ---~A---~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rF 317 (419)
|+ .+++.+..+|...+..+..|++.||..|+++|+++|++|.+++.+++||+||||||||+|+++|||.+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~F 235 (423)
T 2a6h_F 156 VEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 235 (423)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCH
T ss_pred hhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCH
Confidence 22 235677888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHhcccccCccchHHHHHHHHHHHHHHH-hcCCCccHHHHHHHcC--CCHHHHHHHHHHhCccc
Q 014764 318 STYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVF 394 (419)
Q Consensus 318 STYa~~~Irn~I~~~Lrd~~r~irip~~l~e~~~~I~~a~~~L~-e~gRepS~eEIAe~LG--IS~etVr~~l~rark~l 394 (419)
+||++|||++.|.++++++.+.+++|.++.+.+++++++...+. .+++.|+.+|||+.|| +++++|..++..+...+
T Consensus 236 stYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~ 315 (423)
T 2a6h_F 236 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPV 315 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999988884 6899999999999999 99999999999888999
Q ss_pred ccccccCCCCCCCCCCcccccCCC
Q 014764 395 SLDREAFPSLNGLPGETHHSVIHC 418 (419)
Q Consensus 395 SLD~~~~~~~d~~~~~tl~d~IaD 418 (419)
|||.++..+ ++.++.|+++|
T Consensus 316 Sld~~~~~~----~~~~l~d~l~d 335 (423)
T 2a6h_F 316 SLETPIGDE----KDSFYGDFIPD 335 (423)
T ss_dssp ESSCBCSSS----SSCBGGGSSCC
T ss_pred ccccccCCC----Cccchhhhhcc
Confidence 999877422 22356666654
No 4
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=99.89 E-value=3.8e-25 Score=236.80 Aligned_cols=150 Identities=32% Similarity=0.631 Sum_probs=136.6
Q ss_pred HHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhcccccCcc
Q 014764 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPN 344 (419)
Q Consensus 265 A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~r~irip~ 344 (419)
||+.||++|.++|+++|++|++++.+++||+||||||||+++++|++.+|++|+||++|||+|.|.++++++.+.+++|.
T Consensus 375 A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~i~~~lr~~~r~~rip~ 454 (613)
T 3iyd_F 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454 (613)
T ss_dssp HHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHHHHHHHTTTSCSSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHHHHHHHHHhcCcceeCcH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHH-HhcCCCccHHHHHHHcCCCHHHHHHHHHHhCcccccccccCCCCCCCCCCcccccCCC
Q 014764 345 HLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSVIHC 418 (419)
Q Consensus 345 ~l~e~~~~I~~a~~~L-~e~gRepS~eEIAe~LGIS~etVr~~l~rark~lSLD~~~~~~~d~~~~~tl~d~IaD 418 (419)
++.+..+++.++...+ ...|+.||.+|||+.||+++++|+.++..+...+|||.+.+.+ ++..+.++|.|
T Consensus 455 ~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~----~~~~l~d~i~d 525 (613)
T 3iyd_F 455 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD----EDSHLGDFIED 525 (613)
T ss_dssp HHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSS----SSCCGGGSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCC----CCccHHHHhcC
Confidence 9999999999998888 4689999999999999999999999999999999999877422 22345555543
No 5
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.80 E-value=1.7e-20 Score=172.69 Aligned_cols=160 Identities=33% Similarity=0.450 Sum_probs=49.5
Q ss_pred hcCCCCCCHHHHHHHHHHHHccCcchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 014764 200 VVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279 (419)
Q Consensus 200 i~~~~lLt~~eE~eL~rkik~Gd~l~~~~~~l~~~lg~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~s 279 (419)
+.+.+.+++.++.+|+.+++.||. .|++.|+..|.++|++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~gd~----------------------------------------~a~~~l~~~~~~~v~~ 43 (243)
T 1l0o_C 4 MQGQSPIKDQEMKELIRRSQEGDQ----------------------------------------EARDEIIEKNMRLVWS 43 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCHHHHHHHHHHHHcCCH----------------------------------------HHHHHHHHHhHHHHHH
Confidence 455667888888999999999987 8999999999999999
Q ss_pred HHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhcccccCccchHHHHHHHHHHHHH
Q 014764 280 IAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 359 (419)
Q Consensus 280 IAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~r~irip~~l~e~~~~I~~a~~~ 359 (419)
+|.+|.++..+++||+||+|+++|+++++|++.+|..|.||++++++|.+.+++++.. .+++|..+.....+++.+...
T Consensus 44 ~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~ 122 (243)
T 1l0o_C 44 VVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDE 122 (243)
T ss_dssp --------------------------------------------------------CC-CCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-CccCcHHHHHHHHHHHHHHHH
Confidence 9999999889999999999999999999999998889999999999999999999877 678899998888999999988
Q ss_pred HH-hcCCCccHHHHHHHcCCCHHHHHHHHHHhCccccccccc
Q 014764 360 LE-EKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREA 400 (419)
Q Consensus 360 L~-e~gRepS~eEIAe~LGIS~etVr~~l~rark~lSLD~~~ 400 (419)
+. ..++.++..+|++.+|++.+.+...+.......|+|.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 164 (243)
T 1l0o_C 123 LSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETV 164 (243)
T ss_dssp HHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC--------
T ss_pred HHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccc
Confidence 85 568999999999999999999999888777778888664
No 6
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.74 E-value=1.4e-17 Score=149.62 Aligned_cols=128 Identities=22% Similarity=0.238 Sum_probs=104.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhcccccC-
Q 014764 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRL- 342 (419)
Q Consensus 264 ~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~r~iri- 342 (419)
.||+.|+..|.+.|+.+|.++++ ..+++|++||+|+++|+++++|++.. .|.+|++++++|.+.+++|+..+....
T Consensus 23 ~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~d~~R~~~~~~~~~ 99 (194)
T 1or7_A 23 KAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAKNYLVAQGRRPPSS 99 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHHHHHHHHTTCCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 89999999999999999999999 89999999999999999999999875 699999999999999999876543210
Q ss_pred ---------------------ccc---hHHHHHHHHHHHHHHHhc---------CCCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 343 ---------------------PNH---LHERLGLIRNAKLRLEEK---------GVTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 343 ---------------------p~~---l~e~~~~I~~a~~~L~e~---------gRepS~eEIAe~LGIS~etVr~~l~r 389 (419)
|.. ..+....+..++..|++. ..+.|++|||+.||+|+++|++.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~r 179 (194)
T 1or7_A 100 DVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 179 (194)
T ss_dssp HHHHHHHHSCCSSCC--------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 010 112334456666666432 35569999999999999999999999
Q ss_pred hCccc
Q 014764 390 IGKVF 394 (419)
Q Consensus 390 ark~l 394 (419)
+++.+
T Consensus 180 a~~~L 184 (194)
T 1or7_A 180 AREAI 184 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97654
No 7
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.71 E-value=1.4e-16 Score=146.61 Aligned_cols=134 Identities=21% Similarity=0.373 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHcc---CCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhccc
Q 014764 263 SLAREKLVMSNVRLVMSIAQRYD---NMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRT 339 (419)
Q Consensus 263 ~~A~e~LIe~yl~LV~sIAkry~---~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~r~ 339 (419)
..|++.|+..|.++|+.+|.+|+ ++..+++||+||||++||+++++|++.+|.+|.||++++|+|.+.+++++..
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~-- 88 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD-- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS--
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 35899999999999999999998 6788999999999999999999999998889999999999999999998765
Q ss_pred ccCccchHHHHHHHHHHHHHHH-hcCCCccHHHHHHHcCCCHHHHHHHHHHhC--cccccccc
Q 014764 340 LRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNATEAIG--KVFSLDRE 399 (419)
Q Consensus 340 irip~~l~e~~~~I~~a~~~L~-e~gRepS~eEIAe~LGIS~etVr~~l~rar--k~lSLD~~ 399 (419)
+.|.........+..+...+. ..++.|+..|||+.+|++.+.+..++.... ..+|+|..
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~ 150 (239)
T 1rp3_A 89 -FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEV 150 (239)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCcccccc
Confidence 457677777788888888885 579999999999999999999998876653 34566654
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.71 E-value=1.2e-18 Score=155.52 Aligned_cols=130 Identities=12% Similarity=0.096 Sum_probs=105.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhcccccCc
Q 014764 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343 (419)
Q Consensus 264 ~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~r~irip 343 (419)
.||+.|+..|.+.|+.+|.+++++..+++|++||+|+++|+++++|++..| .|.+|++.+++|.+.+++|+..+....+
T Consensus 27 ~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n~~~d~~R~~~~~~~~~ 105 (184)
T 2q1z_A 27 AAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARNRRIDGLRKDRQPEPED 105 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHTSCCTTTCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 899999999999999999999998899999999999999999999998876 8999999999999999998765433221
Q ss_pred c-----------c---hHHHHHHHHHHHHHHHhc---------CCCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 344 N-----------H---LHERLGLIRNAKLRLEEK---------GVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 344 ~-----------~---l~e~~~~I~~a~~~L~e~---------gRepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
. . ..+....+..++..|++. ..+.|++|||+.||+|+++|++.+.++++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 106 LFWGPDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1 0 112234456666666432 2445999999999999999999999987653
No 9
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.68 E-value=9.1e-17 Score=159.81 Aligned_cols=74 Identities=43% Similarity=0.910 Sum_probs=71.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhc
Q 014764 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 337 (419)
Q Consensus 264 ~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~ 337 (419)
.||+.||..|.++|+++|++|++++.+++||+|||||+||+++++|++.+|.+|+||+++||+|.|+++++++.
T Consensus 265 ~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~~~~~lr~~~ 338 (339)
T 1sig_A 265 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 338 (339)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999998889999999999999999999865
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.51 E-value=1.1e-16 Score=141.93 Aligned_cols=126 Identities=8% Similarity=0.026 Sum_probs=97.2
Q ss_pred HHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhcccccCccc
Q 014764 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNH 345 (419)
Q Consensus 266 ~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~r~irip~~ 345 (419)
|+.|+..|.+.|+.+|.+++++..++||++||+|+++|+++++|++.. .|.+|++++++|.+++++|+.......+ .
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~~~~~~-e 79 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEAQTSQS-D 79 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSCCCCCC-S
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCcccCCc-c
Confidence 678899999999999999999989999999999999999999998764 7999999999999999988653111001 0
Q ss_pred hHHHHHHHHHHHHHHHh---------cCCCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 346 LHERLGLIRNAKLRLEE---------KGVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 346 l~e~~~~I~~a~~~L~e---------~gRepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
..+....+..++..|++ ...+.|++|||+.||||+++|+..+.++++.+
T Consensus 80 ~~~~~~~l~~~l~~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~L 137 (157)
T 2lfw_A 80 AEGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEI 137 (157)
T ss_dssp CSSSSSTTTTTTTTSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 01111123333333322 23456999999999999999999999998655
No 11
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.50 E-value=1.6e-14 Score=125.21 Aligned_cols=106 Identities=25% Similarity=0.368 Sum_probs=78.6
Q ss_pred CCChhhHhhHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhcccccCc------------------------
Q 014764 288 GADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP------------------------ 343 (419)
Q Consensus 288 g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~r~irip------------------------ 343 (419)
|.+++|++||+|+++|+++.+|++.+ .+|.||++++++|.+.+++|+..+....+
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLNEALKTNAILEDSAYFDDEGHNI 79 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhHHHhhhhhhhccCCCCCcccchh
Confidence 56899999999999999999999887 58999999999999999999875432211
Q ss_pred ----------cc---hHHHHHHHHHHHH-HHHh--------cCCCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 344 ----------NH---LHERLGLIRNAKL-RLEE--------KGVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 344 ----------~~---l~e~~~~I~~a~~-~L~e--------~gRepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
.. ..+....+..++. .|++ ...+.|+.|||+.||+|.++|+..+.++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 80 NNYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 00 1122334555655 5533 23556999999999999999999999987654
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.43 E-value=2.1e-14 Score=139.41 Aligned_cols=124 Identities=10% Similarity=-0.047 Sum_probs=98.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhcccccCc
Q 014764 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343 (419)
Q Consensus 264 ~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~r~irip 343 (419)
.+|+.|+.+|.+.++.+|.+++++..++||++||+|+.+|+...+|++.. .|.+|++++++|.+++++|.........
T Consensus 21 ~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~~--~~~~wL~~ia~n~~~d~~r~~~~~~~~~ 98 (286)
T 3n0r_A 21 MHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDANL--SPRVALYRVFHAIWLSSGAQLEVGHDQG 98 (286)
T ss_dssp CCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSSS--CHHHHHHHHHHHHHSCTTC----CCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCCc--ChHHHHHHHHHHHHHhhccccccCCCcc
Confidence 58999999999999999999999999999999999999999999998753 7999999999999998887533211111
Q ss_pred cchHHHHHHHHHHHHHHHhc---------CCCccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014764 344 NHLHERLGLIRNAKLRLEEK---------GVTPSVDRIAEYLNMSQKKVRNATEAIGK 392 (419)
Q Consensus 344 ~~l~e~~~~I~~a~~~L~e~---------gRepS~eEIAe~LGIS~etVr~~l~rark 392 (419)
.+....+..++..|++. ..+.+++|||+.||++.++|+..+.++.+
T Consensus 99 ---~~~~~~l~~al~~Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~rA~~ 153 (286)
T 3n0r_A 99 ---LHAGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQA 153 (286)
T ss_dssp ---CCTTSHHHHHHHHHSCHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHhCCHHHeeEEEEEeeCCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 11123455666666433 34559999999999999999999888764
No 13
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.31 E-value=4e-12 Score=105.83 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=64.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhccc
Q 014764 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRT 339 (419)
Q Consensus 264 ~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~r~ 339 (419)
.||+.|+..|.+.|+.+|.++ ++..++||++||+|+.+|+.+.+|++.. .|.+|++++++|.+++++|+..+.
T Consensus 24 ~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~~--~~~~wl~~i~~n~~~d~~R~~~~~ 96 (112)
T 2o7g_A 24 RALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSARS--SARTWLLAIARHVVADHIRHVRSR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCSS--CHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999 8888999999999999999999998643 799999999999999999876643
No 14
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=99.16 E-value=3e-11 Score=96.10 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhc
Q 014764 261 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 337 (419)
Q Consensus 261 ~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~ 337 (419)
....+|+.|+..|.+.++.+|.+++++..++||++||+|+.+|+.+.+|++.. .|.+|++.+++|.+++++|+..
T Consensus 9 g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~~--~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 9 ERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGT--NLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHHHTCC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHHHHHHHhc
Confidence 34479999999999999999999999989999999999999999999998753 7999999999999998887654
No 15
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.64 E-value=2.9e-08 Score=94.57 Aligned_cols=129 Identities=12% Similarity=0.034 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHccCCCCChhhHh----hHHHHHHHHhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhcc
Q 014764 263 SLAREKLVMSNVRLVMSIAQRYDNMGADMADLV----QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSR 338 (419)
Q Consensus 263 ~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLV----QEG~IgLlrAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~r 338 (419)
..+++.+...|.++++.+............|+. ||.|+.+|+.+..|++.. .|.+|++++++|.+.++.+....
T Consensus 96 ~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~~~d~~r~~~~ 173 (258)
T 3clo_A 96 LVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSLSADQRPEQGI 173 (258)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEECSCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHHHcchhhhhHH
Confidence 457999999999999999888777777888997 999999999999998654 79999999999977766432110
Q ss_pred cccC----------ccchHHHHHHHH---HHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhCcccc
Q 014764 339 TLRL----------PNHLHERLGLIR---NAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFS 395 (419)
Q Consensus 339 ~iri----------p~~l~e~~~~I~---~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rark~lS 395 (419)
...+ +..+......+. +..-.|- ..+.|++|||+.||+|++||+..+.++++.+-
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 174 YATITQMERGEVETLSLSEEHRNILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp CCEEEETTTTEEEECCCHHHHTTSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccccccchhhHHHHccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 0000 001111111111 1111111 25669999999999999999999999987654
No 16
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=96.51 E-value=0.034 Score=57.40 Aligned_cols=45 Identities=11% Similarity=0.352 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 349 RLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 349 ~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
..+.|...++.|.. +.+.|++|||+.||||.++|++++.++.+.+
T Consensus 379 reR~VI~LRygL~~-~e~~TleEIAe~LgIS~erVRqi~~RAlkKL 423 (438)
T 1l9z_H 379 REAMVLKLRKGLID-GREHTLEEVGAYFGVTRERIRQIENKALRKL 423 (438)
T ss_pred HHHHHHHHHHhccC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34445555444431 3577999999999999999999999987654
No 17
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=95.97 E-value=0.035 Score=56.81 Aligned_cols=45 Identities=9% Similarity=0.316 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 349 RLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 349 ~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
..+.|...++.|. .+.+.|++|||+.||||.++|++++.++.+.+
T Consensus 364 rer~Vl~lr~~L~-~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kL 408 (423)
T 2a6h_F 364 REAMVLKLRKGLI-DGREHTLEEVGAFFGVTRERIRQIENKALRKL 408 (423)
T ss_dssp HHHHHHHHHHHTT-CC-----CHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3444555544442 13567999999999999999999999987654
No 18
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=95.77 E-value=0.2 Score=45.09 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=27.3
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
..+.|++|||+.||||.++|+.++.++++.+
T Consensus 201 ~~g~s~~EIA~~lgis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSRVSQLKAKALERL 231 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4577999999999999999999999987654
No 19
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=95.28 E-value=0.0043 Score=49.64 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=27.5
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
..+.|++|||+.||||..+|+..+.++++.+
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999987654
No 20
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=93.95 E-value=0.021 Score=47.24 Aligned_cols=30 Identities=3% Similarity=0.269 Sum_probs=26.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
.+.|++|||+.||+|.++|++++.++.+.+
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKL 67 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 567999999999999999999999886544
No 21
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=93.41 E-value=0.055 Score=40.58 Aligned_cols=30 Identities=3% Similarity=0.269 Sum_probs=27.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
.+.|++|||+.||+|..+|+..+.++.+.+
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 577999999999999999999999987665
No 22
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=93.28 E-value=0.0088 Score=44.58 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=27.4
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
..+.|+.|||+.||+|..+|+..+.++.+.+
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999987654
No 23
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=92.41 E-value=0.05 Score=41.47 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=28.6
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rark~lSL 396 (419)
..+.++.|||+.||+|..+|+..+.++.+.+-.
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 466799999999999999999999998776543
No 24
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=92.26 E-value=0.075 Score=42.02 Aligned_cols=30 Identities=10% Similarity=0.387 Sum_probs=27.0
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
.+.|+.|||+.||+|.++|++.+.++.+.+
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 678999999999999999999999987654
No 25
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=92.01 E-value=0.087 Score=40.05 Aligned_cols=30 Identities=7% Similarity=0.350 Sum_probs=26.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
.+.|+.|||+.||+|.++|+..+.++.+.+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 577999999999999999999998887554
No 26
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=91.98 E-value=0.038 Score=46.34 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
..+.|+.|||+.||+|..+|+..+.++++.+
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999887543
No 27
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=91.18 E-value=0.039 Score=49.67 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVF 394 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~l 394 (419)
.+.|++|||+.||||..+|+.++.++++.+
T Consensus 213 ~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 213 KDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp ------------------------------
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 345999999999999999999999987654
No 28
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=90.32 E-value=0.14 Score=37.05 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=27.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~lSL 396 (419)
.+.|+.|||+.||+|..+|+..+.++.+.+-.
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 45699999999999999999999998766544
No 29
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=89.65 E-value=0.36 Score=37.66 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=28.3
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rark~lSL 396 (419)
..+.+++|||+.||++..+|+..+.++.+.+-.
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 356799999999999999999999998766543
No 30
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=88.93 E-value=0.093 Score=44.08 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=25.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCcc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKV 393 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~ 393 (419)
.+.|+.|||+.||+|..+|+..+.++++.
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45699999999999999999999988754
No 31
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=88.71 E-value=0.23 Score=39.94 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=27.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~lSL 396 (419)
.+.|++|||+.||+|..+|+..+.++.+.+-.
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 45699999999999999999999998766543
No 32
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=88.15 E-value=0.2 Score=39.70 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=27.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~lSL 396 (419)
.+.++.|||+.||+|..+|+..+.++.+.+-.
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 45699999999999999999999998876644
No 33
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=87.66 E-value=0.38 Score=38.55 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=28.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
.+.++.|||+.|||+..+|+..+.++.+++-+.
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 466999999999999999999999987766543
No 34
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=86.69 E-value=1 Score=35.45 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
|..||+.|||+.+|+|..+|+.-+....
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le 49 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLH 49 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7789999999999999999999887653
No 35
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=86.42 E-value=0.11 Score=55.37 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=32.6
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhHHHHHHHHH
Q 014764 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKL 269 (419)
Q Consensus 190 ~~~l~~yl~~i~~~~lLt~~eE~eL~rkik~Gd~l~~~~~~l~~~lg~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~L 269 (419)
.|-+++||++++..||||.++|++++++|..|.. ++...+.+++.+++.|
T Consensus 95 ~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~~------------------------------~~~~~~~~~P~ti~~i 144 (613)
T 3iyd_F 95 TDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN------------------------------QVQCSVAEYPEAITYL 144 (613)
T ss_dssp ----------C--------CSSSTTTHHHHHHHH------------------------------HHHHHHHSCHHHHHHH
T ss_pred CCcHHHHHHHhcccccCCchhHHHHHHHHHHhHH------------------------------HHHHHHccCHHHHHHH
Confidence 3789999999999999999999999999999975 5566677777888888
Q ss_pred HHHhHHHH
Q 014764 270 VMSNVRLV 277 (419)
Q Consensus 270 Ie~yl~LV 277 (419)
+..|-.+.
T Consensus 145 l~~~~~l~ 152 (613)
T 3iyd_F 145 LEQYNRVE 152 (613)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877664
No 36
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=86.01 E-value=0.77 Score=34.04 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=27.2
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCcccc
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFS 395 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rark~lS 395 (419)
..+.++.|||+.||+|..+|+..+.++.+.+-
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 34569999999999999999999998876553
No 37
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=85.29 E-value=0.49 Score=38.72 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=27.6
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
+.+++|||+.|||++.+|+..+.++.+++-+.
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 55999999999999999999999887766543
No 38
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=83.97 E-value=0.87 Score=30.41 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=22.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+.++.|||+.|||+..+|...+...
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 4699999999999999999987654
No 39
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=82.69 E-value=0.74 Score=32.59 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
.+.|+.|||+.||+|..+|...+.+
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 3459999999999999999988653
No 40
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=81.64 E-value=2.1 Score=32.19 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=26.3
Q ss_pred HHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 360 LEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 360 L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
|...+...+..|||+.+|+|..+|..++....
T Consensus 19 L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 19 LSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33345668999999999999999999987654
No 41
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=78.13 E-value=1.8 Score=39.73 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
..+.|.+|||++||||+.||+..+.++.+++-..
T Consensus 186 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 186 AVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 3567999999999999999999999988766443
No 42
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=77.77 E-value=1.1 Score=41.13 Aligned_cols=33 Identities=6% Similarity=0.098 Sum_probs=28.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
.+.|.+|||++||||+.||+..+.++.+++-..
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 466999999999999999999999988766443
No 43
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=75.36 E-value=1.7 Score=40.11 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=28.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
.+.|.+|||+.||||+.||+..+.++.+++-+.
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSS 221 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 466999999999999999999999988776543
No 44
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=75.13 E-value=5.3 Score=31.49 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=24.8
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
|...|..|||+.||++..+|+..+.+..
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLA 52 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4678999999999999999999988764
No 45
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=74.19 E-value=3.8 Score=32.75 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=22.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.|..|||+.||+|..+|++.+...
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 899999999999999999998765
No 46
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=73.42 E-value=5.6 Score=35.58 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=31.6
Q ss_pred HHHHHHHHHHH-HhcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 350 LGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..++...+... .+.|..||+.|||+.||++..+|...+.+.
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 34455554443 566888999999999999999999988764
No 47
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=72.49 E-value=5.3 Score=30.94 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=24.6
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+...|..|||+.||++..+|...+.+..
T Consensus 29 ~~~~t~~eLA~~Lgvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 29 GKATTAHDLSGKLGTPKKEINRVLYSLA 56 (77)
T ss_dssp SSCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4578999999999999999999987764
No 48
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=71.40 E-value=2.2 Score=40.39 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=27.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~lSL 396 (419)
.+.|..|||++||||+.||+..+..+.+++-.
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 46699999999999999999999998776644
No 49
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=71.31 E-value=5.1 Score=33.21 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=22.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGK 392 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark 392 (419)
.+.|+.|||+.||+|..+|-.. .++.+
T Consensus 57 ge~TQREIA~~lGiS~stISRi-~r~L~ 83 (101)
T 1jhg_A 57 GEMSQRELKNELGAGIATITRG-SNSLK 83 (101)
T ss_dssp CCSCHHHHHHHHCCCHHHHHHH-HHHHH
T ss_pred CCcCHHHHHHHHCCChhhhhHH-HHHHH
Confidence 3579999999999999999888 55543
No 50
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=68.83 E-value=23 Score=28.48 Aligned_cols=27 Identities=7% Similarity=0.225 Sum_probs=23.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..|||+.+|++..+|...+.+..
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467999999999999999999887653
No 51
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=68.32 E-value=9.4 Score=29.87 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.7
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
...+++.|||+.+|+|+.||+.-+..-
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~L 40 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQL 40 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 456899999999999999999987764
No 52
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=67.55 E-value=11 Score=33.51 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 352 LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 352 ~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+....+..|...++..|..|||+.+|+|..+|++.+....
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~ 61 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLR 61 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3444455565556778999999999999999999887643
No 53
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=66.59 E-value=7.1 Score=31.29 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=25.2
Q ss_pred cCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 363 KGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 363 ~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|..++..|||+.+|+|..+|+.++....
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~ 58 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLE 58 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46568999999999999999999987743
No 54
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=65.59 E-value=28 Score=28.00 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=40.6
Q ss_pred hhHHHHHHHhhHHHHHHHhcccccCccchHHHHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 318 STYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 318 STYa~~~Irn~I~~~Lrd~~r~irip~~l~e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
-.|+.+.+.+.+.+.+.+......++......+.. |.. ...++..|||+.+|++..+|...+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~-------l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 8 LGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCS-------IRC-AACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHH-------HHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHH-------HHh-cCCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 44556666666666666554433443322222221 221 2357999999999999999999987753
No 55
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=64.80 E-value=23 Score=28.73 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=23.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..|||+.+|++..+|..++.+..
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le 72 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLE 72 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 467999999999999999999987753
No 56
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=64.65 E-value=4.7 Score=33.37 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=26.7
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCcc
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKV 393 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rark~ 393 (419)
-.+.|+.|||+.||+|..+|..++.+++..
T Consensus 32 v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 32 VDGKPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp TTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356699999999999999999999998765
No 57
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=63.42 E-value=36 Score=27.54 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=23.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..|||+.+|++..+|..++.+..
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 367999999999999999999988753
No 58
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=62.90 E-value=5.7 Score=29.89 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.2
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+|+.|||+.+|+|..+|..++.--
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 378999999999999999998743
No 59
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=62.84 E-value=9.2 Score=29.12 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=23.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..++..|||+.+|+|..+|...+...
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L 38 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLL 38 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45799999999999999999988764
No 60
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=62.84 E-value=5.7 Score=26.64 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=20.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHH
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~r 389 (419)
.+..|||+.+||+..+|...+..
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 79999999999999999987644
No 61
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=62.77 E-value=6.3 Score=31.06 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014764 348 ERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGK 392 (419)
Q Consensus 348 e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rark 392 (419)
+....+.+++..|++ +...|..+||+.||++...|.+.+-...+
T Consensus 12 ~~~~~v~~~i~~L~~-~~~~Ta~~IAkkLg~sK~~vNr~LY~L~k 55 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNT-NDYTTAISLSNRLKINKKKINQQLYKLQK 55 (75)
T ss_dssp HHHHHHHHHHHTSCT-TCEECHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445666677666652 44479999999999999999998876543
No 62
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=62.56 E-value=28 Score=28.03 Aligned_cols=26 Identities=0% Similarity=-0.022 Sum_probs=23.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.++..|||+.+|++..+|..++.+..
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le 75 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRME 75 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHH
Confidence 67999999999999999999887753
No 63
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=62.39 E-value=31 Score=28.44 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=38.4
Q ss_pred hHHHHHHHhhHHHHHHHhcccccCccchHHHHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 319 TYa~~~Irn~I~~~Lrd~~r~irip~~l~e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|..+.+.+.+.+.+........++.... .+. ..|.. ....+..|||+.+|++..+|..++.+..
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~----~iL---~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 22 SFALYSANLAMHKLYRGLLKALDLTYPQY----LVM---LVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHH----HHH---HHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHH----HHH---HHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 34455555555555554443333332211 111 22222 3457999999999999999999987753
No 64
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=62.30 E-value=22 Score=29.41 Aligned_cols=66 Identities=8% Similarity=0.011 Sum_probs=39.1
Q ss_pred hHHHHHHHhhHHHHHHHhcccccCccchHHHHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 319 TYa~~~Irn~I~~~Lrd~~r~irip~~l~e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|+.+.+.+.+.+.+........++..... .+..|...+..++..|||+.+|++..+|..++.+..
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~-------vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 79 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSYS-------VLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE 79 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHH-------HHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-------HHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 444445555555555544433333321111 122233334456999999999999999999987753
No 65
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=61.38 E-value=8.5 Score=33.34 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|+|..+|..++++..
T Consensus 17 ~~s~~~la~~lg~s~~tv~~rl~~L~ 42 (162)
T 3i4p_A 17 TLAVADLAKKVGLSTTPCWRRIQKME 42 (162)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35999999999999999999988753
No 66
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=60.97 E-value=36 Score=27.67 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=23.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..++..|||+.+|++..+|...+.+..
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~ 76 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLL 76 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 467999999999999999999887753
No 67
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=60.76 E-value=17 Score=29.80 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 355 ~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.++..+...+..++..|||+.+|++..+|..++.+.
T Consensus 20 ~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 20 LTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp HHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHH
Confidence 344444334567899999999999999999988764
No 68
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=60.15 E-value=29 Score=28.86 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=23.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..|||+.+|++..+|..++.+..
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le 88 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLL 88 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467999999999999999999887753
No 69
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=59.99 E-value=10 Score=34.75 Aligned_cols=27 Identities=33% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.+.|++|||+.||||..+|..++..|+
T Consensus 23 ~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 23 DGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 458999999999999999999999886
No 70
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=59.90 E-value=12 Score=31.46 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=23.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..|||+.+|+|..+|..++.+..
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 44 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLE 44 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 347999999999999999999988753
No 71
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=59.67 E-value=28 Score=29.67 Aligned_cols=66 Identities=8% Similarity=-0.007 Sum_probs=39.8
Q ss_pred hHHHHHHHhhHHHHHHHhcccccCccchHHHHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 319 TYa~~~Irn~I~~~Lrd~~r~irip~~l~e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|....+.+.+.+.+........+..... ..+..|...+..++..|||+.+|++..+|...+.+..
T Consensus 28 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~-------~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 93 (166)
T 3deu_A 28 GSDLARLVRIWRALIDHRLKPLELTQTHW-------VTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE 93 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHH-------HHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHH-------HHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 34444455555556555443333332211 1222233334568999999999999999999887753
No 72
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=59.09 E-value=12 Score=32.05 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=24.7
Q ss_pred HHhcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 360 LEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 360 L~e~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
|...+ ..+..|||+.+|+|..+|..++.+.
T Consensus 19 L~~~~-~~s~~ela~~lg~s~~tv~~~l~~L 48 (162)
T 2p5v_A 19 LQENG-RLTNVELSERVALSPSPCLRRLKQL 48 (162)
T ss_dssp HHHCT-TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44334 3799999999999999999998775
No 73
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=59.01 E-value=46 Score=26.62 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=23.3
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|++..+|...+.+..
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~ 77 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLD 77 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67999999999999999999987753
No 74
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=58.81 E-value=13 Score=31.31 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=23.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..|||+.+|+|..+|..++++..
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 48 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKLK 48 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999887743
No 75
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=58.69 E-value=13 Score=29.82 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=23.9
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
...+++.|||+.+|+|..||+..+..-
T Consensus 14 ~g~vsv~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 14 QGRMEAKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp SCSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 456899999999999999999988764
No 76
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=57.96 E-value=42 Score=27.92 Aligned_cols=67 Identities=6% Similarity=0.001 Sum_probs=41.1
Q ss_pred hhhHHHHHHHhhHHHHHHHhcccccCccchHHHHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 317 ISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 317 FSTYa~~~Irn~I~~~Lrd~~r~irip~~l~e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.-.+....+.+.+.+.+........+.......+..| .. ....+..|||+.+|++..+|..++.+..
T Consensus 23 ~l~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l-------~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le 89 (159)
T 3s2w_A 23 FIGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRL-------YR-EDGINQESLSDYLKIDKGTTARAIQKLV 89 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHH-------HH-SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345555555555556555544444443333222222 11 3457999999999999999999887753
No 77
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.94 E-value=41 Score=27.11 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=24.3
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+...+..|||+.+|++..+|..++.+..
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L~ 77 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGLE 77 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 4567999999999999999999987753
No 78
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=57.50 E-value=17 Score=31.98 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=30.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
..+.+.+|||+.|+++..||+..+.+.++++.+.
T Consensus 172 ~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~ 205 (225)
T 3klo_A 172 GSGASNIEIADKLFVSENTVKTHLHNVFKKINAK 205 (225)
T ss_dssp TTTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCS
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 4467999999999999999999999999887665
No 79
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=57.44 E-value=14 Score=31.29 Aligned_cols=25 Identities=4% Similarity=0.260 Sum_probs=22.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+..|||+.+|+|..+|...+.+.
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 21 KAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999999988765
No 80
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=57.18 E-value=28 Score=28.49 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|++..+|..++.+..
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le 79 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77999999999999999999887753
No 81
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=57.02 E-value=28 Score=29.01 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=23.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..|||+.+|++..+|..++.+..
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 357999999999999999999988753
No 82
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=56.75 E-value=21 Score=28.24 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=28.1
Q ss_pred HHHHHHHHH-hcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 353 IRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 353 I~~a~~~L~-e~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+.++...+. .....+++++||+.+|+|..++....+..
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444553 34566899999999999999999887654
No 83
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=56.48 E-value=48 Score=26.97 Aligned_cols=26 Identities=4% Similarity=0.175 Sum_probs=23.3
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|++..+|...+.+..
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 57999999999999999999987753
No 84
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=56.45 E-value=14 Score=32.47 Aligned_cols=26 Identities=4% Similarity=0.238 Sum_probs=23.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|+|..+|...+.+..
T Consensus 41 ~~s~~eLA~~lglS~~tv~~rl~~L~ 66 (171)
T 2e1c_A 41 KAPLREISKITGLAESTIHERIRKLR 66 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47999999999999999999987753
No 85
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=55.96 E-value=17 Score=29.45 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=21.1
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHH
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~r 389 (419)
+|+.+||+.+|+|..||...+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 89999999999999999998754
No 86
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=55.75 E-value=15 Score=32.29 Aligned_cols=32 Identities=9% Similarity=0.228 Sum_probs=25.7
Q ss_pred HHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 359 RLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 359 ~L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|...+ ..+..|||+.+|+|..+|..++.+..
T Consensus 25 ~L~~~~-~~s~~eLA~~lglS~~tv~~~l~~L~ 56 (171)
T 2ia0_A 25 LLKKDA-RLTISELSEQLKKPESTIHFRIKKLQ 56 (171)
T ss_dssp HHHHCT-TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344333 47999999999999999999988753
No 87
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=55.44 E-value=14 Score=29.39 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014764 346 LHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGK 392 (419)
Q Consensus 346 l~e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rark 392 (419)
..+..++|.++ |.+.|..++..|||+.+|++..+|..++.+.++
T Consensus 17 ~~d~eekVLe~---LkeaG~PlkageIae~~GvdKKeVdKaik~LKk 60 (80)
T 2lnb_A 17 EGHLEQRILQV---LTEAGSPVKLAQLVKECQAPKRELNQVLYRMKK 60 (80)
T ss_dssp HHHHHHHHHHH---HHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH---HHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444444 555588889999999999999999999988753
No 88
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=54.96 E-value=16 Score=30.87 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=23.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..|||+.+|+|..+|..++.+..
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L~ 47 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKMK 47 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357999999999999999999987753
No 89
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=54.30 E-value=17 Score=30.01 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=25.6
Q ss_pred HHhcCCC-ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 360 LEEKGVT-PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 360 L~e~gRe-pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
|...+.. +|..|||+.+|++..+|...+.+..
T Consensus 35 L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~ 67 (123)
T 3r0a_A 35 FLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH 67 (123)
T ss_dssp HHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3333444 7999999999999999999988753
No 90
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=54.15 E-value=42 Score=27.69 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=23.3
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..++..|||+.+|++..+|...+.+.
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56799999999999999999988765
No 91
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=54.06 E-value=18 Score=33.96 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=29.3
Q ss_pred cCCCccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 363 KGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 363 ~gRepS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
.|+.|+..++|+.+|++.++|+.++.... .+-+|
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~l~-~~~~D 66 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQAT-STEYD 66 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHCT-TCEEC
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHhCC-cEEEC
Confidence 79999999999999999999999998774 33344
No 92
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=53.99 E-value=37 Score=27.94 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=23.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..++..|||+.+|++..+|..++.+..
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le 80 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLI 80 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357999999999999999999887753
No 93
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=53.89 E-value=34 Score=28.62 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.++..|||+.+|++..+|...+.+..
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~~Le 92 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVDQLV 92 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67999999999999999999887753
No 94
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=53.74 E-value=26 Score=28.35 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
...|..|||+.+|++..+|..++...
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L 65 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKL 65 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45799999999999999999998775
No 95
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=53.33 E-value=20 Score=29.62 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=23.6
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+..++..|||+.+|++..+|..++.+.
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~L 46 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKL 46 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 346899999999999999999988764
No 96
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=52.88 E-value=38 Score=27.67 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=23.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|++..+|..++.+..
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67999999999999999999988753
No 97
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=52.68 E-value=25 Score=27.79 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=28.6
Q ss_pred HHHHHHHHHh-cC-CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 353 IRNAKLRLEE-KG-VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 353 I~~a~~~L~e-~g-RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+.++...+.. .. ..+++++||+.+|+|..++....+..
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555643 44 67899999999999999998877653
No 98
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=52.52 E-value=24 Score=25.06 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=23.9
Q ss_pred CCCccHHHHHHHc-----CCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYL-----NMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~L-----GIS~etVr~~l~ra 390 (419)
...+|.+||++.| ++|..||..-+...
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 5678999999999 99999999988844
No 99
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=52.33 E-value=19 Score=30.35 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=23.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
...+..|||+.+|+|..+|..++.+.
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34799999999999999999988764
No 100
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=52.32 E-value=20 Score=27.58 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
...++..|||+.+|++..+|...+...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L 60 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKL 60 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456899999999999999999998765
No 101
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=51.52 E-value=27 Score=27.04 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCccHHHHHHHcCCCHHH-HHHHHHHh
Q 014764 355 NAKLRLEEKGVTPSVDRIAEYLNMSQKK-VRNATEAI 390 (419)
Q Consensus 355 ~a~~~L~e~gRepS~eEIAe~LGIS~et-Vr~~l~ra 390 (419)
..+..+...+..++..|||+.+|++..+ |..++.+.
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~L 55 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRL 55 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHH
Confidence 3444454445578999999999999999 88887764
No 102
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=51.25 E-value=83 Score=26.37 Aligned_cols=75 Identities=8% Similarity=0.010 Sum_probs=53.7
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHh
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrA 305 (419)
|-..-| ...|..++|..+|+|+..+..-...-.+-+..++..+...+............+..+.+...+..++..
T Consensus 26 l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (212)
T 3knw_A 26 LVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKD 101 (212)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 444556 468899999999999999998877666677777777776666665555444566666666666655555
No 103
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=51.21 E-value=14 Score=28.70 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.++.+||+.+||+..+|...+....
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5899999999999999988776543
No 104
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=51.16 E-value=25 Score=28.72 Aligned_cols=27 Identities=4% Similarity=0.130 Sum_probs=23.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..|||+.+|++..+|...+.+..
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L~ 75 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKLE 75 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 356999999999999999999887753
No 105
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=51.00 E-value=11 Score=30.60 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+-|+..|||+.+|+|..+|++++...
T Consensus 42 ~lps~~eLa~~lgVSr~tVr~al~~L 67 (102)
T 2b0l_A 42 GLLVASKIADRVGITRSVIVNALRKL 67 (102)
T ss_dssp EEECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44699999999999999999998874
No 106
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=50.83 E-value=11 Score=31.61 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=23.3
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+-|+..++|+.+|+|..+|++++...
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 45699999999999999999998864
No 107
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=50.72 E-value=50 Score=26.66 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=23.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.++..|||+.+|++..+|..++.+..
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L~ 72 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRLE 72 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 57999999999999999999887753
No 108
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=50.61 E-value=28 Score=27.57 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=27.6
Q ss_pred HHHHHHHHH-hcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 353 IRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 353 I~~a~~~L~-e~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+..+...+. .....+++++||+.+|+|..++.......
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444443 34567899999999999999998876543
No 109
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=50.53 E-value=3.3 Score=38.98 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=0.0
Q ss_pred hHHHHHHHhhCCCCchHHHHHHhc--CChHHHHHHHhHH
Q 014764 226 DHKLRLKERLGCEPSMEQLAASLR--ISRPELQSILMEC 262 (419)
Q Consensus 226 ~~~~~l~~~lg~~p~~~e~A~~~~--~s~~eLr~~l~~~ 262 (419)
.....|...+|++||++|+|..+| +|.+.++..+..+
T Consensus 201 ~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~a 239 (245)
T 3ugo_A 201 RTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIA 239 (245)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 345567888999999999999999 9999998876644
No 110
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=50.52 E-value=34 Score=27.40 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=23.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..|||+.+|++..+|...+.+..
T Consensus 46 ~~~~~~ela~~l~~~~~tvs~~l~~L~ 72 (139)
T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQRMK 72 (139)
T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 357999999999999999999887753
No 111
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=50.31 E-value=21 Score=28.51 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=29.3
Q ss_pred HHHHHHHHHHh-cCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 352 LIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 352 ~I~~a~~~L~e-~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+.++...+.. ....+++++||+.+|+|..++.......
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555653 3556899999999999999998877654
No 112
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=50.14 E-value=12 Score=30.56 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+-|+..|||+.+|+|..+|++++...
T Consensus 32 ~lPs~~~La~~~~vSr~tvr~al~~L 57 (113)
T 3tqn_A 32 MIPSIRKISTEYQINPLTVSKAYQSL 57 (113)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34699999999999999999998764
No 113
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=49.98 E-value=15 Score=30.49 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.6
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+-||..|||+.+|+|..+|++++...
T Consensus 35 ~~Lps~~~La~~~~vSr~tvr~Al~~L 61 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVSRAYQEL 61 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345689999999999999999998764
No 114
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=49.83 E-value=40 Score=28.26 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=39.5
Q ss_pred hhhHHHHHHHhhHHHHHHHhcccccCccchHHHHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 317 ISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 317 FSTYa~~~Irn~I~~~Lrd~~r~irip~~l~e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...|+.+.+.+.+.+.+........+...... .+..|... ...+..|||+.+|++..+|..++.+..
T Consensus 19 ~l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~-------iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le 85 (162)
T 3k0l_A 19 RLSYMIARVDRIISKYLTEHLSALEISLPQFT-------ALSVLAAK-PNLSNAKLAERSFIKPQSANKILQDLL 85 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHH-------HHHHHHHC-TTCCHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHH-------HHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555544433333322211 12222222 367999999999999999999887753
No 115
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=49.79 E-value=23 Score=29.21 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+..|||+.+|+|..+|..++.+.
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L 42 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKAL 42 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4599999999999999999988764
No 116
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=49.29 E-value=40 Score=27.83 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..|||+.+|++..+|..++.+..
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le 82 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMD 82 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357999999999999999999987753
No 117
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=49.17 E-value=80 Score=27.00 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|.++||..+|++.++|...+...+
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~ 188 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALA 188 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3999999999999999999988754
No 118
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=48.94 E-value=30 Score=28.20 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.++..|||+.+|++..+|...+.+..
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~ 79 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRME 79 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHH
Confidence 57999999999999999999887653
No 119
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=48.91 E-value=13 Score=28.52 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=21.8
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.|++|+|+.|||+..++.++.+..
T Consensus 17 LTi~EaAeylgIg~~~l~~L~~~~ 40 (70)
T 1y6u_A 17 LTIEEASKYFRIGENKLRRLAEEN 40 (70)
T ss_dssp EEHHHHHHHTCSCHHHHHHHHHHC
T ss_pred eCHHHHHHHHCcCHHHHHHHHHcC
Confidence 399999999999999999998763
No 120
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=48.48 E-value=20 Score=27.95 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=21.3
Q ss_pred hhCCCCchHHHHHHhcCChHHHHHHH
Q 014764 234 RLGCEPSMEQLAASLRISRPELQSIL 259 (419)
Q Consensus 234 ~lg~~p~~~e~A~~~~~s~~eLr~~l 259 (419)
..|.+|+..|+|.++|+|...++.-|
T Consensus 20 ~~g~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 20 DDGAPVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp HTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 35889999999999999987766533
No 121
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=48.27 E-value=50 Score=27.03 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.++..|||+.+|++..+|..++.+..
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~Le 76 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRLE 76 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57999999999999999999987753
No 122
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=48.24 E-value=37 Score=26.49 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=21.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+++++||+.+|+|..++.......
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6799999999999999998876554
No 123
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=47.99 E-value=26 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|+.|+|+.+|++..+|.+.+..
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4669999999999999999998753
No 124
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=47.83 E-value=28 Score=28.25 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.++..|||+.+|++..+|...+.+..
T Consensus 51 ~~~~~ela~~l~~~~~tvs~~l~~L~ 76 (142)
T 2bv6_A 51 PVNVKKVVTELALDTGTVSPLLKRME 76 (142)
T ss_dssp EEEHHHHHHHTTCCTTTHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 57999999999999999999887753
No 125
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=47.64 E-value=15 Score=32.00 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=28.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
.+.+.+|||+.|+++..||+..+.+.++++.+.
T Consensus 168 ~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~ 200 (215)
T 1a04_A 168 QGLPNKMIARRLDITESTVKVHVKHMLKKMKLK 200 (215)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCC
Confidence 346999999999999999999999988776554
No 126
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=47.37 E-value=22 Score=30.65 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=28.4
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
..+.+.+|||+.||++..+|+..+.+.++++-..
T Consensus 155 ~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~ 188 (208)
T 1yio_A 155 IRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVR 188 (208)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred HcCCcHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 3456999999999999999999998888776543
No 127
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=46.95 E-value=29 Score=31.79 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=39.5
Q ss_pred cCccchHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHcCCCHHHHHHHHHH
Q 014764 341 RLPNHLHERLGLIRNAKLRLEEKGVT-PSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 341 rip~~l~e~~~~I~~a~~~L~e~gRe-pS~eEIAe~LGIS~etVr~~l~r 389 (419)
.+|.....++....+.+..|.+.|.+ +|-.|||+.+|++..+|++=+..
T Consensus 2 ~i~~~~~~Rl~~y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~ 51 (211)
T 2dt5_A 2 KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSY 51 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHH
Confidence 35777777777778888888766654 59999999999999999987654
No 128
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=46.78 E-value=69 Score=26.89 Aligned_cols=32 Identities=9% Similarity=0.137 Sum_probs=26.0
Q ss_pred HHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 360 LEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 360 L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
|...+...+..|||+.+|++..+|-.++.+.-
T Consensus 40 L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le 71 (151)
T 4aik_A 40 INRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE 71 (151)
T ss_dssp HHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 43446667889999999999999999887753
No 129
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=46.57 E-value=16 Score=25.51 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|..++|+.+|++..+|.+...-
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4679999999999999999988653
No 130
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=46.53 E-value=23 Score=33.91 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=25.0
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
....++.|||+.||+|..||++.+..+.
T Consensus 19 ~~~~~~~ela~~l~vS~~tIrRdL~~l~ 46 (315)
T 2w48_A 19 EQDMTQAQIARELGIYRTTISRLLKRGR 46 (315)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4558999999999999999999998765
No 131
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=46.49 E-value=24 Score=29.44 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=26.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC--cccccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG--KVFSLD 397 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar--k~lSLD 397 (419)
..||+.+||+.||++..+|.+++..-- ..+.+.
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 348999999999999999999998753 345543
No 132
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=45.91 E-value=36 Score=25.38 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=20.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
+..|..|+|+.+||+..+|.++..-
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5678899999999999888887654
No 133
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=45.40 E-value=58 Score=20.87 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHccCcchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHH
Q 014764 204 ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSIL 259 (419)
Q Consensus 204 ~lLt~~eE~eL~rkik~Gd~l~~~~~~l~~~lg~~p~~~e~A~~~~~s~~eLr~~l 259 (419)
+.|++++-.+++.....|. +..++|+.+|+|...+...+
T Consensus 4 ~~l~~~~~~~i~~~~~~g~-----------------s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNV-----------------SLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----------------CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCC-----------------CHHHHHHHHCcCHHHHHHHH
Confidence 4567766555665555554 47789999999987755543
No 134
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=45.10 E-value=16 Score=30.60 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+-|+..+||+.+|+|..+|++++...
T Consensus 34 ~lPse~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 34 QLPSVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34699999999999999999998764
No 135
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=44.78 E-value=49 Score=27.06 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=24.4
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+..++..|||+.+|+|...|++++..-.
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~ 51 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR 51 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567999999999999999999987654
No 136
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=44.41 E-value=12 Score=28.24 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
+.+|+.|||+.+|+|..+|..++.
T Consensus 8 ~~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 8 TAATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp -CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHc
Confidence 347999999999999999988764
No 137
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=44.37 E-value=18 Score=25.56 Aligned_cols=25 Identities=8% Similarity=0.194 Sum_probs=21.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
+..|..++|+.+|++..+|.+...-
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5679999999999999999988654
No 138
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=44.33 E-value=35 Score=31.37 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=38.4
Q ss_pred cCccchHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHcCCCHHHHHHHHHH
Q 014764 341 RLPNHLHERLGLIRNAKLRLEEKGVT-PSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 341 rip~~l~e~~~~I~~a~~~L~e~gRe-pS~eEIAe~LGIS~etVr~~l~r 389 (419)
.+|.....++....+.+..|.+.|.+ +|-.|||+.+|++..+|+.=+..
T Consensus 7 ~i~~~~~~Rl~~Y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~ 56 (215)
T 2vt3_A 7 KIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSY 56 (215)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHH
Confidence 57888888888888888888776655 59999999999999999986654
No 139
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=44.22 E-value=34 Score=28.18 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=24.2
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
....+..|||+.+|++..+|..++.+..
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le 76 (151)
T 3kp7_A 49 IEALTVGQITEKQGVNKAAVSRRVKKLL 76 (151)
T ss_dssp HSCBCHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3567999999999999999999887753
No 140
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=43.68 E-value=19 Score=25.64 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=21.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
+..|..++|+.+|++..+|.+...-
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5679999999999999999998653
No 141
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.65 E-value=66 Score=26.00 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=24.2
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
....+..|||+.+|++..+|..++.+..
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le 75 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELE 75 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 3467999999999999999999987753
No 142
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.35 E-value=45 Score=26.77 Aligned_cols=26 Identities=4% Similarity=0.005 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|++..+|...+.+..
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le 75 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLE 75 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 47999999999999999999887753
No 143
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=43.28 E-value=22 Score=31.44 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=27.7
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
+.|.+|||+.|+++..||+..+.+.++++.+.
T Consensus 164 g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 164 GLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 47999999999999999999998887776553
No 144
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=43.19 E-value=18 Score=30.43 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+-|+..+||+.+|+|..+|++++...
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L 52 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLL 52 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45699999999999999999998874
No 145
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=43.14 E-value=1.4e+02 Score=24.62 Aligned_cols=77 Identities=8% Similarity=0.026 Sum_probs=55.0
Q ss_pred HHHhhCCC-CchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHh
Q 014764 231 LKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (419)
Q Consensus 231 l~~~lg~~-p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIe 307 (419)
|-..-|-. .|..++|..+|+|...+..-...-.+-+..++..+...+............+..+.+...+..++..+.
T Consensus 29 l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 106 (206)
T 3kz9_A 29 VFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNIDLDLHAKENIANITNAMIELVV 106 (206)
T ss_dssp HHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 44455644 889999999999999999887776677778888777777766666555555666666665555555443
No 146
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=42.84 E-value=87 Score=27.07 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.+|.++||..+|++.++|...+....
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 192 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFK 192 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 45999999999999999999988754
No 147
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=42.45 E-value=26 Score=31.79 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 353 IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 353 I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+++..|...+..++..+||+.||++..+|..++.+..
T Consensus 7 YL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 7 YLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp HHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 445555665556678999999999999999999988753
No 148
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=42.28 E-value=85 Score=24.04 Aligned_cols=31 Identities=26% Similarity=0.183 Sum_probs=24.5
Q ss_pred chHHHHHHhcCChHHHHHHHhHHHHHHHHHH
Q 014764 240 SMEQLAASLRISRPELQSILMECSLAREKLV 270 (419)
Q Consensus 240 ~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LI 270 (419)
+..|+|..+|+|...++..+..+...+...+
T Consensus 55 s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 55 STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999988877655444444
No 149
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=41.73 E-value=49 Score=29.15 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=24.4
Q ss_pred HhcCCCccHHHHHHHcCCC-HHHHHHHHHHh
Q 014764 361 EEKGVTPSVDRIAEYLNMS-QKKVRNATEAI 390 (419)
Q Consensus 361 ~e~gRepS~eEIAe~LGIS-~etVr~~l~ra 390 (419)
.+.|-.||..|||+.+|++ ..+|.+.+...
T Consensus 20 ~~~g~~ps~~elA~~lgiss~~tv~~~~~~l 50 (202)
T 1jhf_A 20 SQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL 50 (202)
T ss_dssp HHHSSCCCHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHhCCCChHHHHHHHHHH
Confidence 3446667999999999999 99998877653
No 150
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=41.67 E-value=1.4e+02 Score=24.31 Aligned_cols=76 Identities=13% Similarity=0.003 Sum_probs=53.5
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhH
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAI 306 (419)
|-.+-| ...|..++|+.+|+|+..+..-...-.+-+..+++.+...+............+..+.+...+..++..+
T Consensus 21 l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (195)
T 3ppb_A 21 LFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTWA 97 (195)
T ss_dssp HHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHh
Confidence 334455 4678999999999999999987776667777777777777666665555555566666666555555444
No 151
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=41.60 E-value=1.5e+02 Score=24.67 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=50.0
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHh
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIe 307 (419)
|-.+-| ...|..++|+.+|+|+..+..-...-.+-+..++..+...+............+..+-+...+..++..+.
T Consensus 43 l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 120 (218)
T 3dcf_A 43 LFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTIL 120 (218)
T ss_dssp HHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 334455 35789999999999999998877665566777776666655555555444445555555555555555443
No 152
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=41.48 E-value=40 Score=28.16 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=23.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|+|..+|...+.+..
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~ 42 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLE 42 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57999999999999999999988753
No 153
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=40.89 E-value=22 Score=25.45 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=21.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|..|+|+.+|++..+|.+...-
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5679999999999999999987653
No 154
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=40.86 E-value=33 Score=26.92 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=22.4
Q ss_pred CccHHHHHHHcCCCHH-HHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQK-KVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~e-tVr~~l~ra 390 (419)
..|..|||+.|||+.. .|++.+...
T Consensus 25 ~~ta~eiA~~Lgit~~~aVr~hL~~L 50 (79)
T 1xmk_A 25 DSSALNLAKNIGLTKARDINAVLIDM 50 (79)
T ss_dssp CEEHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCcHHHHHHHHHHH
Confidence 5699999999999999 999988764
No 155
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=40.81 E-value=17 Score=26.86 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=20.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+..|+|+.||||..|+.......
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 478999999999999998876543
No 156
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=40.80 E-value=29 Score=32.05 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=39.8
Q ss_pred cCccchHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHcCCCHHHHHHHHHH
Q 014764 341 RLPNHLHERLGLIRNAKLRLEEKGVT-PSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 341 rip~~l~e~~~~I~~a~~~L~e~gRe-pS~eEIAe~LGIS~etVr~~l~r 389 (419)
.+|.....++....+.+..|.+.|.+ +|-.|||+.+|++..+|++=+..
T Consensus 6 ~ip~~ti~RL~~Y~r~l~~l~~~g~~~isS~ela~~~gv~~~qiRkDls~ 55 (212)
T 3keo_A 6 SIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSY 55 (212)
T ss_dssp CCCHHHHTTHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHCCCeEECHHHHHHHHCCCHHHHHHHHHH
Confidence 46777777777788888888776654 59999999999999999987643
No 157
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=40.61 E-value=45 Score=30.65 Aligned_cols=34 Identities=24% Similarity=0.103 Sum_probs=26.8
Q ss_pred HHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 357 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 357 ~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+..|...+...+..|||+.+|++..+|..++...
T Consensus 14 L~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L 47 (249)
T 1mkm_A 14 LDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVL 47 (249)
T ss_dssp HHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3334444557899999999999999999998754
No 158
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=40.60 E-value=78 Score=25.45 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=24.3
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
....+..|||+.+|++..+|..++.+..
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 4567999999999999999999887753
No 159
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=40.38 E-value=63 Score=27.77 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=23.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..|.++||..+|++.++|...+...+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~ 194 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQ 194 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45999999999999999999988754
No 160
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=40.29 E-value=44 Score=27.94 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=23.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
...+..+||+.+|++..+|..++.+..
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le 79 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLA 79 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 457999999999999999999987753
No 161
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=40.26 E-value=29 Score=32.23 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 351 GLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 351 ~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..|...+..+..-.+-|+..|+|+.+|+|..+|++++...
T Consensus 21 ~~l~~~I~~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L 60 (248)
T 3f8m_A 21 AELDRMLDGMRIGDPFPAEREIAEQFEVARETVRQALREL 60 (248)
T ss_dssp HHHHHHHHHCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344443333333466799999999999999999998764
No 162
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=40.05 E-value=8.9 Score=30.49 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+-|+..|||+.+|+|..+|+.++....
T Consensus 34 ~lps~~eLa~~~~vSr~tvr~al~~L~ 60 (102)
T 1v4r_A 34 TLPSVADIRAQFGVAAKTVSRALAVLK 60 (102)
T ss_dssp BCCCHHHHHHHSSSCTTHHHHHTTTTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345999999999999999999987643
No 163
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=39.91 E-value=82 Score=26.40 Aligned_cols=69 Identities=14% Similarity=-0.010 Sum_probs=41.5
Q ss_pred CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHh
Q 014764 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305 (419)
Q Consensus 237 ~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrA 305 (419)
...|..++|+.+|+|...+..-...-.+-+..+++.+...+............+..+.+...+..+++.
T Consensus 44 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 112 (212)
T 3nxc_A 44 QRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGF 112 (212)
T ss_dssp --CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 468899999999999998887666555566666666555554444433333334455444444444433
No 164
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=39.72 E-value=25 Score=26.31 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=22.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|..++|+.+|++..+|.+...-
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5679999999999999999998753
No 165
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=39.71 E-value=24 Score=25.52 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=21.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|..++|+.+|++..+|...+.-
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4679999999999999999988653
No 166
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=39.61 E-value=1.6e+02 Score=24.17 Aligned_cols=80 Identities=8% Similarity=0.003 Sum_probs=53.7
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHcc-CCCCChhhHhhHHHHHHHHhHhh
Q 014764 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYD-NMGADMADLVQGGLIGLLRGIEK 308 (419)
Q Consensus 231 l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~-~~g~d~EDLVQEG~IgLlrAIer 308 (419)
|-..-|- ..|..++|+.+|+|+..+..-...-.+-+..++..+...+........ ..+.+..+-+...+..+++.+..
T Consensus 22 lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 101 (197)
T 3rd3_A 22 IMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACP 101 (197)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHCCT
T ss_pred HHHHCCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Confidence 3444564 578999999999999988887666556666677666665555555443 33456677777766666666554
Q ss_pred cC
Q 014764 309 FD 310 (419)
Q Consensus 309 FD 310 (419)
..
T Consensus 102 ~~ 103 (197)
T 3rd3_A 102 PC 103 (197)
T ss_dssp TS
T ss_pred Cc
Confidence 43
No 167
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=39.39 E-value=19 Score=26.20 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=21.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|+.|+|+.+|++..+|......
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3569999999999999999998753
No 168
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=39.33 E-value=1.3e+02 Score=24.76 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=40.1
Q ss_pred CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhh
Q 014764 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMAD 293 (419)
Q Consensus 237 ~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~ED 293 (419)
...|..++|+.+|++...+..-...-.+-+..+++.+...+............+..+
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIERADPTSGPVDA 87 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 678999999999999999998777666667777777666655554444333334433
No 169
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=39.32 E-value=70 Score=23.91 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~r 389 (419)
.++.|..|+|+.+|++..+|.+.+.-
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45779999999999999999998753
No 170
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=39.32 E-value=36 Score=32.08 Aligned_cols=42 Identities=5% Similarity=0.056 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 349 RLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 349 ~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+.+....+..|...+...+..|||+.+|++..+|..++...
T Consensus 28 sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL 69 (275)
T 3mq0_A 28 ALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVM 69 (275)
T ss_dssp HHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444444445455567899999999999999999998754
No 171
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.26 E-value=34 Score=25.73 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=23.4
Q ss_pred CCccHHHHHHHc-----CCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYL-----NMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~L-----GIS~etVr~~l~ra 390 (419)
..+|.+||++.+ +++..||...+...
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L 62 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 578999999999 99999999988764
No 172
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=39.23 E-value=43 Score=30.75 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 358 LRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 358 ~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..|...+...+..|||+.+|++..+|..++....
T Consensus 13 ~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~ 46 (241)
T 2xrn_A 13 RALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE 46 (241)
T ss_dssp HHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344444567999999999999999999987653
No 173
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=39.22 E-value=24 Score=25.61 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|..++|+.+|++..+|......
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5679999999999999999998654
No 174
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=39.21 E-value=24 Score=25.53 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
++.|..++|+.+|++..+|.....
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHC
Confidence 567999999999999999998765
No 175
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=38.82 E-value=1.6e+02 Score=24.12 Aligned_cols=77 Identities=8% Similarity=-0.130 Sum_probs=51.4
Q ss_pred HHHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhH
Q 014764 230 RLKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (419)
Q Consensus 230 ~l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAI 306 (419)
+|-.+-| ...|..++|+.+|+|...+..-...-.+-+..++..+...+............+..+.+...+-.++..+
T Consensus 18 ~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (199)
T 3qbm_A 18 ALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFRSYA 95 (199)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHGGG
T ss_pred HHHHHhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHh
Confidence 3444566 4578999999999999999887776666777777777666665555544444455565555544444433
No 176
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=38.75 E-value=54 Score=24.79 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=22.3
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~r 389 (419)
.+..|+.|+|+.+|++..+|.++..-
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45779999999999999999987653
No 177
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=38.74 E-value=44 Score=27.57 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=27.2
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
..+|..+...| .+.| ...|+++||+..||+.+++-..
T Consensus 10 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 48 (194)
T 2g7s_A 10 ADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHH 48 (194)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHHH
Confidence 34455554444 5555 5679999999999999999874
No 178
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=38.68 E-value=57 Score=26.65 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=11.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNAT 387 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l 387 (419)
++.|++|+|+.+||+..+|..+.
T Consensus 19 ~glSq~eLA~~~gis~~~is~iE 41 (112)
T 2wus_R 19 RRITLLDASLFTNINPSKLKRIE 41 (112)
T ss_dssp TTCCHHHHHHHSSCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 34455555555555555554443
No 179
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=38.55 E-value=27 Score=26.67 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=23.6
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+...+..|||+.+|++..+|...+...
T Consensus 36 ~~~~s~~ela~~l~is~~tvs~~l~~L 62 (99)
T 3cuo_A 36 SPGTSAGELTRITGLSASATSQHLARM 62 (99)
T ss_dssp CCSEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 446799999999999999999988765
No 180
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=38.36 E-value=47 Score=25.27 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
...+..|||+.+|++..+|...+...
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L 58 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVL 58 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34799999999999999999998775
No 181
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=38.28 E-value=42 Score=25.29 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|..++|+.+|++..+|.+...-
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4679999999999999999988653
No 182
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=38.20 E-value=40 Score=27.22 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=27.0
Q ss_pred HHHHHHHHHh-cCCCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 353 IRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 353 I~~a~~~L~e-~gRepS~eEIAe~LGIS~etVr~~l~r 389 (419)
+.++...+.. ....+++++||+.+|+|..++....+.
T Consensus 9 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444444543 355679999999999999999887655
No 183
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=37.90 E-value=1.2e+02 Score=24.87 Aligned_cols=77 Identities=14% Similarity=0.004 Sum_probs=49.2
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHh
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIe 307 (419)
|-.+-| ...|..++|+.+|+|...+..-...-.+.+..++..+..-+............+..+.+...+..+++.+.
T Consensus 20 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (195)
T 3pas_A 20 EVADHGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRIGL 97 (195)
T ss_dssp HHHHHHHHHCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHcChHhcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 334445 34789999999999999998877766666777776665555544444333445555555555555444443
No 184
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=37.61 E-value=26 Score=24.58 Aligned_cols=25 Identities=4% Similarity=0.096 Sum_probs=21.5
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
+..|..++|+.+|++..+|.+...-
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3569999999999999999987653
No 185
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=37.41 E-value=30 Score=24.64 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=22.1
Q ss_pred CCccHHHHHHHcC--CCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLN--MSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LG--IS~etVr~~l~r 389 (419)
++.|..|+|+.+| ++..+|.+...-
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 5679999999999 999999988654
No 186
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=37.08 E-value=27 Score=25.90 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=21.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
+..|+.|+|+.+|++..+|.....
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC
Confidence 567999999999999999998864
No 187
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=37.08 E-value=20 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=20.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
++.|..++|+.+||+..+|.+...
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 356999999999999999988764
No 188
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=36.76 E-value=26 Score=27.50 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=22.2
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
+..|+.|+|+.+||+..+|.++..-
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5679999999999999999988754
No 189
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=36.63 E-value=42 Score=27.49 Aligned_cols=27 Identities=4% Similarity=0.118 Sum_probs=17.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..++..|||+.+|++..+|..++.+..
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~ 82 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLE 82 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 567999999999999999999887753
No 190
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=36.59 E-value=81 Score=25.48 Aligned_cols=26 Identities=0% Similarity=0.070 Sum_probs=20.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|++..+|...+.+..
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~ 76 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELE 76 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 67999999999999999999887753
No 191
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=36.50 E-value=39 Score=26.19 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+..|||+.+|++..+|...+...
T Consensus 43 ~~~~~eLa~~l~is~~tv~~~L~~L 67 (96)
T 1y0u_A 43 GRSEEEIMQTLSLSKKQLDYHLKVL 67 (96)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999999999999988764
No 192
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=36.45 E-value=22 Score=31.35 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
-.|..|+|+.|||+..+|+++++..
T Consensus 31 ~LTv~EVAe~LgVs~srV~~LIr~G 55 (148)
T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLREG 55 (148)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTT
T ss_pred eEcHHHHHHHhCCCHHHHHHHHHCC
Confidence 3499999999999999999998754
No 193
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=36.38 E-value=99 Score=25.61 Aligned_cols=76 Identities=8% Similarity=-0.071 Sum_probs=49.7
Q ss_pred HhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhh
Q 014764 233 ERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (419)
Q Consensus 233 ~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIer 308 (419)
.+-|- ..|..++|+.+|+|...+..-...-.+-+..++..+..-+............+..+.+...+..++..+..
T Consensus 25 ~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 101 (204)
T 3eup_A 25 NVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSMYNDADGS 101 (204)
T ss_dssp HHHHHHHCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHTCHHHHHHGGGGT
T ss_pred HHcCcccCCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 33443 46889999999999998888766655667777776666655555544444456666666555555554443
No 194
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=36.34 E-value=28 Score=25.64 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
++.|..|+|+.+|++..+|.+...
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 567999999999999999998765
No 195
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.28 E-value=21 Score=25.72 Aligned_cols=24 Identities=4% Similarity=0.084 Sum_probs=21.0
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
++.|..++|+.+|++..+|.+...
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 356999999999999999998765
No 196
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=36.21 E-value=51 Score=28.66 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=54.6
Q ss_pred hhHHHHHHhhcCC-----CCCCHHHHHHHHHHHHccCcchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhHHHHH
Q 014764 191 NRLKGYVKGVVSE-----ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLA 265 (419)
Q Consensus 191 ~~l~~yl~~i~~~-----~lLt~~eE~eL~rkik~Gd~l~~~~~~l~~~lg~~p~~~e~A~~~~~s~~eLr~~l~~~~~A 265 (419)
+.+.-|-..+... +.+|.++..+|+...-.-+.-+-...+++.+-||+|+..|.
T Consensus 25 ~rl~wFq~~i~e~~~~~~~~~t~~e~~~lI~~yl~R~d~ELeql~~~rR~gRp~s~Re~--------------------- 83 (144)
T 2kkm_A 25 ARVKFMQDVVNSDTFKGQPIFDHAHTREFIQSFIERDDTELDELKKKRRSNRPPSNRQV--------------------- 83 (144)
T ss_dssp HHHHHHHHHHHSTTTTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCCTTHHH---------------------
T ss_pred HHHHHHHHHcccccccccCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhCCCCCCchHHH---------------------
Confidence 3444444444332 46999999888876433222222333456678999864431
Q ss_pred HHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhhcCCCC
Q 014764 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 313 (419)
Q Consensus 266 ~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIerFDp~r 313 (419)
+++. .+..-...|.. |...-||....++.+++ .||.+-
T Consensus 84 ---~L~~---~~~~E~~ey~t-G~~iPDLtd~~nvk~Lr---~W~G~~ 121 (144)
T 2kkm_A 84 ---LLQQ---RRDQELKEFKA-GFLCPDLSDAKNMEFLR---NWNGTF 121 (144)
T ss_dssp ---HHHH---HHHHHHHHHHT-TEEEECSCCHHHHHHHH---TCSSCS
T ss_pred ---HHHH---HHHHHHHHHcc-CccCCCCCCHHHHHHHH---HcCCCh
Confidence 1111 12233345554 99999999999988876 666554
No 197
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=36.02 E-value=30 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=21.0
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHh
Q 014764 368 SVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 368 S~eEIAe~LGIS~etVr~~l~ra 390 (419)
++.++|+.||++..+|...+...
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~ 37 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRG 37 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHhc
Confidence 99999999999999999988654
No 198
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=35.87 E-value=52 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=20.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
++.|+.|+|+.+|++..+|.....
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 356899999999999999988765
No 199
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=35.85 E-value=39 Score=27.72 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=28.9
Q ss_pred HHHHHHHHHHh-cCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 352 LIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 352 ~I~~a~~~L~e-~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+..+...+.. ....+++++||+.+|+|..++....+..
T Consensus 12 ~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 12 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555643 3556899999999999999998877653
No 200
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=35.70 E-value=1.8e+02 Score=23.89 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=46.7
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHH
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlr 304 (419)
|-.+-| ...|..++|+.+|+++..+..-...-.+-+..+++.+...+............+..+.+...+..++.
T Consensus 23 lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 97 (196)
T 3he0_A 23 LIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGVNDDMPLKERYRTMWLNIWN 97 (196)
T ss_dssp HHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTTTCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 444456 45889999999999999988766655566666666666555555444444444444544444444433
No 201
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=35.62 E-value=67 Score=27.18 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=27.4
Q ss_pred HHHHHHHHHH-HhcCCCccHHHHHHHcCCCHHHHHHH
Q 014764 351 GLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 351 ~~I~~a~~~L-~e~gRepS~eEIAe~LGIS~etVr~~ 386 (419)
.+|..+...| .+.|-..|.++||+..||+.+++-..
T Consensus 16 ~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~~ 52 (196)
T 2qwt_A 16 ARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYRH 52 (196)
T ss_dssp HHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHH
Confidence 4455554444 56666789999999999999999874
No 202
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=35.61 E-value=1.3e+02 Score=24.22 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|++..+|..++.+..
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le 70 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLA 70 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 48999999999999999999987753
No 203
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=35.47 E-value=24 Score=25.63 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=18.6
Q ss_pred cHHHHHHHcCCCHHHHHHHH
Q 014764 368 SVDRIAEYLNMSQKKVRNAT 387 (419)
Q Consensus 368 S~eEIAe~LGIS~etVr~~l 387 (419)
|..++|+.||++..+|.+..
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 89999999999999998875
No 204
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=35.39 E-value=29 Score=30.15 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=31.2
Q ss_pred hcCCCccHHHHHHHcC---CCHHHHHHHHHHhCcccccc
Q 014764 362 EKGVTPSVDRIAEYLN---MSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 362 e~gRepS~eEIAe~LG---IS~etVr~~l~rark~lSLD 397 (419)
..++..|.+|||+.|+ ++..+|+..+.+.++++..+
T Consensus 160 ~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~~ 198 (220)
T 1p2f_A 160 NAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIEDD 198 (220)
T ss_dssp TTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCSS
T ss_pred CCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcc
Confidence 3466789999999999 99999999999998887654
No 205
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=35.26 E-value=80 Score=25.83 Aligned_cols=38 Identities=21% Similarity=0.118 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 349 RLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 349 ~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
....|..+...| .+.| ...|+.+||+..|++.+++-..
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 48 (188)
T 3qkx_A 9 LAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLY 48 (188)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHH
Confidence 344555555555 5555 5689999999999999999764
No 206
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=35.10 E-value=76 Score=26.62 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=20.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
...+..|||+.+|++..+|..++.+.
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~L 86 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRL 86 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 56799999999999999999988765
No 207
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=34.96 E-value=53 Score=25.02 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=11.9
Q ss_pred ccHHHHHHHcCCCHHHHHHHHH
Q 014764 367 PSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~ 388 (419)
.|..++|+.+|++..+|.+.+.
T Consensus 22 ltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 22 VSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHc
Confidence 3555555555555555555443
No 208
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=34.86 E-value=51 Score=28.04 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=19.9
Q ss_pred CccHHHHHHHcCCCHHHHHHHHH
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ 388 (419)
+.|+.|||+.+|+|..||...-+
T Consensus 75 G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 75 GYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 47999999999999999977543
No 209
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=34.64 E-value=29 Score=25.75 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.8
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHh
Q 014764 368 SVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 368 S~eEIAe~LGIS~etVr~~l~ra 390 (419)
|..|+|+.+||+..+|.+....-
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHHCC
Confidence 99999999999999999987653
No 210
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=34.58 E-value=1.7e+02 Score=23.13 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.3
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|++..+|...+.+..
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L~ 70 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLLE 70 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57999999999999999999987753
No 211
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=34.54 E-value=1.9e+02 Score=23.72 Aligned_cols=78 Identities=10% Similarity=0.007 Sum_probs=53.3
Q ss_pred HHHhhCCCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhh
Q 014764 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (419)
Q Consensus 231 l~~~lg~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIer 308 (419)
+-.+-|-..|..++|+.+|+|...+..-...-.+-+..+++.+...+............+..+.+...+-.++..+..
T Consensus 21 lf~~~G~~~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 98 (190)
T 3jsj_A 21 LTYRDGVGIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADDGRSPRERILYVFERVESQAGA 98 (190)
T ss_dssp HHHHHCTTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhCccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Confidence 445567558899999999999999998777666667777777666665555444444446666666665555555443
No 212
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=34.44 E-value=55 Score=29.92 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014764 343 PNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGK 392 (419)
Q Consensus 343 p~~l~e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rark 392 (419)
|....|+-....++ |. .+-..++.|+|+.+|||...|..++..++-
T Consensus 23 plS~yErg~~y~r~---L~-~g~~~~Q~~lA~~~giS~a~VSR~L~~A~L 68 (189)
T 3mky_B 23 PTSAYERGQRYASR---LQ-NEFAGNISALADAENISRKIITRCINTAKL 68 (189)
T ss_dssp CCCHHHHHHHHHHH---HH-TTTTTCHHHHHHHHTSCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHH---Hh-cCcccCHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 44455554444443 32 255679999999999999999999988763
No 213
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=34.15 E-value=72 Score=27.77 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=22.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|.++||..+|++.++|...+...+
T Consensus 176 ~t~~~iA~~lg~sr~tvsR~l~~L~ 200 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLE 200 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4999999999999999999988754
No 214
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=34.09 E-value=41 Score=31.01 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+-|+..|+|+.+|+|..+|++++...
T Consensus 32 ~~lPse~~La~~~~vSr~tvr~Al~~L 58 (243)
T 2wv0_A 32 MPLPSEREYAEQFGISRMTVRQALSNL 58 (243)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455799999999999999999998764
No 215
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=34.05 E-value=74 Score=26.69 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred cCccchHHHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 341 RLPNHLHERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 341 rip~~l~e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+......+...+|..+...| .+.| ..+|+++||+..||+.+++-..
T Consensus 11 ~~~~~~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 58 (212)
T 1pb6_A 11 KRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHh
No 216
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=33.96 E-value=76 Score=24.45 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=23.5
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+..++..|||+.+|++..+|..++.+.
T Consensus 28 ~~~~t~~eLa~~l~i~~~tvs~~l~~L 54 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSPHSYVWLIIKKF 54 (95)
T ss_dssp TCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344799999999999999999988765
No 217
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=33.65 E-value=34 Score=26.03 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=22.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|..|+|+.+|++..+|.++..-
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5689999999999999999998653
No 218
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=33.62 E-value=33 Score=25.23 Aligned_cols=25 Identities=4% Similarity=-0.044 Sum_probs=22.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
-.+..|+|+.||++..++...+...
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 3589999999999999999988765
No 219
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=33.59 E-value=26 Score=33.24 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.3
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~r 389 (419)
.+.+|+.+||+..|+|..||..++..
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCC
Confidence 56789999999999999999998864
No 220
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=33.50 E-value=40 Score=27.72 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 351 GLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 351 ~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+..+...+.+ ....++++||+.+|+|...+....+..
T Consensus 79 ~~l~~a~~~i~~-~~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 79 DKITHACRLLEQ-ETPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp HHHHHHHHHTCS-SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345555555544 566799999999999999998887654
No 221
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=33.37 E-value=47 Score=29.20 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHH
Q 014764 353 IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 353 I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~ 386 (419)
+..+..-+.+.| ..|..+||+.+||+..++-..
T Consensus 17 l~aA~~l~~~~G-~~s~~~IA~~aGvs~~tlY~h 49 (213)
T 2g7g_A 17 AEAALELVDRDG-DFRMPDLARHLNVQVSSIYHH 49 (213)
T ss_dssp HHHHHHHHHHHS-SCCHHHHHHHTTSCHHHHHTT
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHhCCCHhHHHHH
Confidence 344444456789 999999999999999998763
No 222
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=33.37 E-value=43 Score=27.72 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=23.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|++..+|..++.+..
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le 83 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLE 83 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67999999999999999999987753
No 223
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=33.29 E-value=1.9e+02 Score=23.37 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=49.4
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhH
Q 014764 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (419)
Q Consensus 231 l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAI 306 (419)
|-.+-|- .-|..++|+.+|+|+..+..-...-.+-+..++......+............+..+.+...+..+++.+
T Consensus 20 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (188)
T 3qkx_A 20 LMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPFFEQYRQMWKNIWYFL 96 (188)
T ss_dssp HHHHSCSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 4445564 488999999999999999887776556677777666665555555444444455555555544444433
No 224
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=33.25 E-value=84 Score=23.95 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=20.6
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ 388 (419)
.+..|..|+|+.+|++..+|.+...
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4567999999999999999888754
No 225
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=33.19 E-value=1.1e+02 Score=24.70 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.8
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 368 SVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 368 S~eEIAe~LGIS~etVr~~l~rar 391 (419)
+..|||+.+|++..+|...+.+..
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le 75 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLE 75 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHH
Confidence 999999999999999999887753
No 226
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=33.13 E-value=42 Score=30.81 Aligned_cols=27 Identities=11% Similarity=0.316 Sum_probs=23.6
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+-|+..|+|+.+|+|..+|++++...
T Consensus 27 ~~lPse~~La~~~~vSr~tvr~Al~~L 53 (239)
T 3bwg_A 27 DKLPVLETLMAQFEVSKSTITKSLELL 53 (239)
T ss_dssp CBCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 456799999999999999999998753
No 227
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=33.07 E-value=32 Score=26.44 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=27.3
Q ss_pred HHHHHHhcCC-CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 356 AKLRLEEKGV-TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 356 a~~~L~e~gR-epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.+..|.+.|- ..+.+|||+.+|++.+.|..++++..
T Consensus 37 iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 37 LLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp HHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3444554443 34899999999999999999988764
No 228
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=33.05 E-value=66 Score=26.79 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred cCccchHHHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHH
Q 014764 341 RLPNHLHERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKV 383 (419)
Q Consensus 341 rip~~l~e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etV 383 (419)
+......+...+|..+...| .+.| ...|.++||+..||+.+++
T Consensus 4 r~~~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~ 48 (203)
T 3b81_A 4 RTNINFNNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGAL 48 (203)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred ccccChHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhH
No 229
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=33.01 E-value=63 Score=26.03 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ 388 (419)
.++.|++|+|+.+|++..+|.++..
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 3678999999999999999998764
No 230
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=32.77 E-value=2.1e+02 Score=23.54 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=51.2
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhH
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAI 306 (419)
|-.+-| ...|..++|+.+|+++..+..-...-.+-+..++..+...+............+..+.+...+..+++.+
T Consensus 26 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (203)
T 3f1b_A 26 VFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAPAGDPGLSPREQLRRALEGFLGFV 102 (203)
T ss_dssp HHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 444556 3678999999999999999987776666677777776666655555544445555555555555444443
No 231
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=32.66 E-value=1.2e+02 Score=26.33 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.8
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+|.++||..+|++.++|...+...
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L 187 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSL 187 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHH
Confidence 499999999999999999988764
No 232
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=32.55 E-value=22 Score=27.04 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.9
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ 388 (419)
.++.|..++|+.+|++..+|.+.+.
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4678999999999999999998754
No 233
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=32.52 E-value=85 Score=28.43 Aligned_cols=42 Identities=33% Similarity=0.388 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 349 RLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 349 ~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
....+.+++..+.+.+..++..+||+.||++..+|..++.+.
T Consensus 7 ~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~L 48 (226)
T 2qq9_A 7 TTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARM 48 (226)
T ss_dssp HHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555666666544555567999999999999999988765
No 234
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=32.44 E-value=35 Score=26.35 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=23.0
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
...+..|||+.+|++..+|...+...
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L 60 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWL 60 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35699999999999999999988765
No 235
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=32.43 E-value=90 Score=23.09 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=18.8
Q ss_pred cHHHHHHHcCCCHHHHHHHHHH
Q 014764 368 SVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 368 S~eEIAe~LGIS~etVr~~l~r 389 (419)
|..|+|+.+||+..+|.++...
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 8889999999999999887653
No 236
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=32.43 E-value=68 Score=26.97 Aligned_cols=38 Identities=29% Similarity=0.297 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 349 RLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 349 ~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
....|..+...| .+.| ...|+++||+..||+.+++-..
T Consensus 13 ~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~ 52 (192)
T 2fq4_A 13 TQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKW 52 (192)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHH
Confidence 344555555555 5555 6789999999999999999774
No 237
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=32.33 E-value=45 Score=27.01 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.9
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.+..|||+.+|++..+|..++.+..
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~ 76 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLV 76 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999999999999999987753
No 238
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=32.32 E-value=1.6e+02 Score=25.20 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=22.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|.++||..+|++.++|...+..-+
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~ 203 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLG 203 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4999999999999999999988754
No 239
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=32.06 E-value=57 Score=26.71 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 349 RLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 349 ~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
...+|..+...| .+.| ..+|+.+||+..||+.+++-.
T Consensus 13 tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 13 TKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp HHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHH
Confidence 345566665555 4444 577999999999999999865
No 240
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=32.02 E-value=38 Score=31.14 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=22.5
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+-|+..|+|+.+|+|..+|++++...
T Consensus 31 ~~lPse~~La~~~~vSr~tvr~Al~~L 57 (236)
T 3edp_A 31 MLMPNETALQEIYSSSRTTIRRAVDLL 57 (236)
T ss_dssp C--CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 355799999999999999999998763
No 241
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=31.81 E-value=1.2e+02 Score=25.12 Aligned_cols=77 Identities=12% Similarity=0.011 Sum_probs=49.1
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHh
Q 014764 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (419)
Q Consensus 231 l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIe 307 (419)
|-.+.|- ..|..++|+.+|++..-+..-...-.+-+..+++.+...+............+..+.+...+..++..+.
T Consensus 32 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 109 (203)
T 3mnl_A 32 IASKGGYEAVQMRAVADRADVAVGTLYRYFPSKVHLLVSALGREFSRIDAKTDRSAVAGATPFQRLNFMVGKLNRAMQ 109 (203)
T ss_dssp HHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHCCCGGGTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCccCCHHHHHHHcCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3334443 3788999999999999999877766666777777666555544433333445556655555555554443
No 242
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=31.73 E-value=2.1e+02 Score=23.25 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=48.9
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHHhH-HHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHh
Q 014764 231 LKERLGC-EPSMEQLAASLRISRPELQSILME-CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (419)
Q Consensus 231 l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~-~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIe 307 (419)
|-.+-|- ..|..++|+.+|+|+..+..-... -.+-+..++..+..-+............+..+-+...+-.++..+.
T Consensus 18 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 96 (191)
T 1sgm_A 18 LSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIKKTASQFD 96 (191)
T ss_dssp HHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCccccCHHHHHHHHCCCchhHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcc
Confidence 4444553 578999999999999999987775 5566677776666555544443333334555555555555554443
No 243
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=31.57 E-value=31 Score=31.04 Aligned_cols=26 Identities=12% Similarity=0.441 Sum_probs=23.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+-|+..|+|+.+|+|..+|++++..-
T Consensus 30 ~LPsE~eLa~~~gVSR~tVReAL~~L 55 (239)
T 1hw1_A 30 ILPAERELSELIGVTRTTLREVLQRL 55 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45699999999999999999998764
No 244
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=31.52 E-value=65 Score=29.53 Aligned_cols=77 Identities=23% Similarity=0.244 Sum_probs=0.0
Q ss_pred chhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHH
Q 014764 224 LDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLL 303 (419)
Q Consensus 224 l~~~~~~l~~~lg~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLl 303 (419)
++.+..-+.+.+..+++.+++|..+++|..-|++.
T Consensus 5 ~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~--------------------------------------------- 39 (292)
T 1d5y_A 5 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRM--------------------------------------------- 39 (292)
T ss_dssp HHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHH---------------------------------------------
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHH---------------------------------------------
Q ss_pred HhHhhcCCCCCCchhhHHHHHHHhhHHHHHHHhcccccCccchHHHHHHHHHHHHHHHhcCCCccHHHHHHHcCCC
Q 014764 304 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMS 379 (419)
Q Consensus 304 rAIerFDp~rG~rFSTYa~~~Irn~I~~~Lrd~~r~irip~~l~e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS 379 (419)
|...-|.+|..|+...-.......|+.... ++.|||..+|.+
T Consensus 40 -----f~~~~g~s~~~~~~~~Rl~~a~~~L~~~~~-----------------------------~i~~ia~~~Gf~ 81 (292)
T 1d5y_A 40 -----FKDVTGHAIGAYIRARRLSKSAVALRLTAR-----------------------------PILDIALQYRFD 81 (292)
T ss_dssp -----HHHHHSSCHHHHHHHHHHHHHHHHHHHCCC-----------------------------CHHHHHHHTTCS
T ss_pred -----HHHHHCcCHHHHHHHHHHHHHHHHHhcCCC-----------------------------CHHHHHHHcCCC
No 245
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.50 E-value=1.7e+02 Score=25.84 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.7
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+..|||+.+|++..+|..++.+.
T Consensus 62 ~~t~~eLa~~l~i~~stvs~~l~~L 86 (207)
T 2fxa_A 62 GASISEIAKFGVMHVSTAFNFSKKL 86 (207)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5799999999999999999988764
No 246
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=31.36 E-value=75 Score=24.98 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=20.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
+..|++|+|+.+||+..+|.++..
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 567899999999999999988764
No 247
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=31.23 E-value=47 Score=31.30 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.8
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+-|+..|+|+.+|+|..+|++++...
T Consensus 51 ~~lPse~~La~~~~vSr~tvr~Al~~L 77 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVALEARKVL 77 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 456799999999999999999998763
No 248
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=31.18 E-value=82 Score=26.46 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=27.6
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
..+|..+...| .+.| ..+|+.+||+..||+.+++-..
T Consensus 33 r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~ 71 (218)
T 3dcf_A 33 RTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYY 71 (218)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHH
Confidence 34455554444 5666 5689999999999999999764
No 249
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=31.10 E-value=85 Score=26.03 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=28.1
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
..+|..+...| .+.| ...|+.+||+..||+.+++-..
T Consensus 16 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (203)
T 3f1b_A 16 EQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLY 54 (203)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHH
Confidence 34455555555 5556 5789999999999999999874
No 250
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=31.09 E-value=21 Score=33.60 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=21.8
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~r 389 (419)
.+.+|+.+||+..|+|..||..++..
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 45689999999999999999998853
No 251
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=30.97 E-value=53 Score=27.26 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=26.2
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
.+|..+...| .+.| ...|.++||+..||+.+++-.
T Consensus 10 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 10 ERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHH
Confidence 4444444444 5555 678999999999999999876
No 252
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=30.92 E-value=2.2e+02 Score=23.97 Aligned_cols=46 Identities=9% Similarity=-0.055 Sum_probs=33.7
Q ss_pred hhCCCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 014764 234 RLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279 (419)
Q Consensus 234 ~lg~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~s 279 (419)
+-|...|..++|+.+|++...+..-...-.+-+..+++.+...+..
T Consensus 35 ~~G~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~ 80 (215)
T 2hku_A 35 EHGEGVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAGK 80 (215)
T ss_dssp HHCTTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3445788999999999999999887766556666666665554443
No 253
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=30.86 E-value=1.3e+02 Score=24.95 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+|+.|||+.+|++..+|-..+.+.-
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le 77 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMR 77 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 456999999999999999999887753
No 254
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=30.79 E-value=2.3e+02 Score=23.45 Aligned_cols=76 Identities=4% Similarity=-0.037 Sum_probs=54.0
Q ss_pred HhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCC-CChhhHhhHHHHHHHHhHhh
Q 014764 233 ERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG-ADMADLVQGGLIGLLRGIEK 308 (419)
Q Consensus 233 ~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g-~d~EDLVQEG~IgLlrAIer 308 (419)
.+-|- ..|..++|..+|+|...+..-...-.+-+..++..+...+........... .+..+.+...+..+++.+..
T Consensus 30 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 107 (213)
T 2qtq_A 30 REGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMENIVKSVDALLAKDDMSPEAKLRRHISKCIDTYYD 107 (213)
T ss_dssp HHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccHHHHHHHhCCChhhHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34453 678999999999999999988777667777777777766666555554444 56666666666666665544
No 255
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=30.76 E-value=25 Score=30.07 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=27.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC--ccccccc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG--KVFSLDR 398 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar--k~lSLD~ 398 (419)
..||.++||+.||++..+|.+.+..-- ..+.+..
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~ 85 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEE 85 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 568999999999999999999988753 4666643
No 256
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=30.71 E-value=89 Score=26.01 Aligned_cols=39 Identities=28% Similarity=0.270 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 348 ERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 348 e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+...+|..+...| .+.| ...|+.+||+..||+.+++-..
T Consensus 12 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 52 (202)
T 3lwj_A 12 ERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNY 52 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHH
Confidence 3344555555554 5555 5789999999999999999774
No 257
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=30.71 E-value=66 Score=25.40 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=18.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHH
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ 388 (419)
+.|+.++|+.+|++..+|.....
T Consensus 22 glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 22 GLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 56888888888888888887754
No 258
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=30.30 E-value=65 Score=26.88 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 353 IRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 353 I~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+..+..-+.+.| ...|.++||+..||+.+++-..
T Consensus 13 l~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 47 (192)
T 2zcm_A 13 IDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYH 47 (192)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHH
Confidence 344444445555 5689999999999999999874
No 259
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=30.07 E-value=40 Score=29.76 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=40.5
Q ss_pred HHHHHHHhcccccCccch---HHHHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 329 VSRALVENSRTLRLPNHL---HERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 329 I~~~Lrd~~r~irip~~l---~e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
+..|+........+|-.. .....++..+....+ .|+..||.+||+.+|.+...|-.++.+ +++++.
T Consensus 49 l~~Yf~G~~~~f~lpl~~~g~t~fq~~V~~~l~~IP-~G~~~tYg~iA~~~g~p~RaVG~A~~~--np~~~~ 117 (156)
T 1wrj_A 49 LDLYFEGKKVDLTEPVDFKPFNEFRIRVFKEVMRIK-WGEVRTYKQVADAVKTSPRAVGTALSK--NNVLLI 117 (156)
T ss_dssp HHHHTTTCCCCCCCCBCCTTSCHHHHHHHHHHTTSC-TTCCEEHHHHHHHTTSCHHHHHHHHHT--CSBTTT
T ss_pred HHHHHcCCCCCCCeeecCCCCCHHHHHHHHHHhCCC-CCceEcHHHHHHHhCCCccHHHHHHHh--CCCCCc
Confidence 333554443334455443 334455666554443 589999999999999998666666553 454443
No 260
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=29.97 E-value=88 Score=26.16 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 347 HERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 347 ~e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
.+...+|..+...| .+.| ...|+.+||+..||+.+++-..
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 13 LETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhh
No 261
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=29.95 E-value=1.1e+02 Score=25.82 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=24.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGK 392 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark 392 (419)
.+.++.|+|...|+|+.+|.+++.+.++
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3669999999999999999999977653
No 262
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=29.92 E-value=87 Score=25.69 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=26.9
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
.+|..+...| .+.| ..+|+.+||+..|++.+++-..
T Consensus 12 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~ 49 (195)
T 3ppb_A 12 QAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHH 49 (195)
T ss_dssp HHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHH
Confidence 3444444444 5555 6789999999999999999874
No 263
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.88 E-value=1.4e+02 Score=24.12 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=28.1
Q ss_pred CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHH
Q 014764 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMS 272 (419)
Q Consensus 237 ~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~ 272 (419)
..-+..|+|..+|+|...++..+..+.......+..
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999999999999888776655555544
No 264
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=29.76 E-value=2e+02 Score=23.36 Aligned_cols=75 Identities=8% Similarity=0.012 Sum_probs=49.3
Q ss_pred hhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHH--HHHHHHccCCCCChhhHhhHHHHHHHHhHhh
Q 014764 234 RLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLV--MSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (419)
Q Consensus 234 ~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV--~sIAkry~~~g~d~EDLVQEG~IgLlrAIer 308 (419)
.-|- ..|..++|..+|+|+..+..-...-.+-+..++..+...+ ............+..+-+...+..+++.+..
T Consensus 25 ~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 102 (196)
T 3col_A 25 AEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTRIRLYVQQVYDYSLA 102 (196)
T ss_dssp HHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTTCCHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCcccCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHHHHHHHHHHHHHHHc
Confidence 3453 5788999999999999988876665566666666666555 4444443344455666666666666655544
No 265
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=29.62 E-value=95 Score=25.98 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
..+|..+...| .+.| ...|+.+||+..||+.+++-..
T Consensus 16 r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~ 54 (212)
T 3knw_A 16 RQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHY 54 (212)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHH
Confidence 34455554444 5555 6789999999999999999874
No 266
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=29.49 E-value=40 Score=26.55 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=22.3
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+.+..+||+.+|++..+|...+.+.
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4699999999999999999988764
No 267
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=29.41 E-value=84 Score=26.27 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHH
Q 014764 349 RLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 349 ~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~ 386 (419)
...-+..+..-+.+.|-..|..+||+..||+.+++-..
T Consensus 17 r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~~ 54 (194)
T 2q24_A 17 RDKILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYRN 54 (194)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHHH
No 268
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=29.39 E-value=88 Score=24.52 Aligned_cols=41 Identities=7% Similarity=0.106 Sum_probs=30.8
Q ss_pred HHHhcCCCccHHHHHHHcCCCHHHHHHHHHHh--Cccc--ccccc
Q 014764 359 RLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI--GKVF--SLDRE 399 (419)
Q Consensus 359 ~L~e~gRepS~eEIAe~LGIS~etVr~~l~ra--rk~l--SLD~~ 399 (419)
.+.+....++.+.+|+.+|++++.|...+... ...+ ++|.+
T Consensus 23 ~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~ 67 (84)
T 1ufm_A 23 SASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 67 (84)
T ss_dssp HHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETT
T ss_pred HHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCC
Confidence 34456788899999999999999999987764 2222 56654
No 269
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=29.38 E-value=67 Score=26.55 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=25.9
Q ss_pred HHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 352 LIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 352 ~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+|..+...| .+.| ...|+++||+..||+.+++-..
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 42 (194)
T 3bqz_B 6 KILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYH 42 (194)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHh
Confidence 344444444 5555 6789999999999999999874
No 270
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=29.32 E-value=74 Score=25.33 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=14.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNAT 387 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l 387 (419)
++.|++|+|+.+|++..+|.++.
T Consensus 33 ~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 34566666666666666666654
No 271
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=29.29 E-value=42 Score=25.48 Aligned_cols=26 Identities=8% Similarity=0.262 Sum_probs=23.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|++..+|...+....
T Consensus 30 ~~~~~ela~~l~is~~tvs~~l~~L~ 55 (100)
T 1ub9_A 30 KAPFSQIQKVLDLTPGNLDSHIRVLE 55 (100)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56999999999999999999988753
No 272
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=29.22 E-value=51 Score=29.16 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=21.5
Q ss_pred hcCCCccHHHHHHHcCCCHHHHHHHHH
Q 014764 362 EKGVTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 362 e~gRepS~eEIAe~LGIS~etVr~~l~ 388 (419)
..++..|+.|||+.|||+..++.+-..
T Consensus 44 ~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 44 NNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp --CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 345578999999999999999987444
No 273
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=29.05 E-value=74 Score=26.91 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=26.9
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
..+|..+...| .+.| ...|+++||+..||+.+++-.
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~ 50 (212)
T 2ras_A 13 RARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSR 50 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHHH
Confidence 34455554444 5555 678999999999999999866
No 274
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=29.01 E-value=39 Score=29.45 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=31.1
Q ss_pred hcCCCccHHHHHHHc-----CCCHHHHHHHHHHhCcccccc
Q 014764 362 EKGVTPSVDRIAEYL-----NMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 362 e~gRepS~eEIAe~L-----GIS~etVr~~l~rark~lSLD 397 (419)
..++..|.+|||+.| +++..+|+..+.+.++++..+
T Consensus 171 ~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~~ 211 (230)
T 2oqr_A 171 NSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEAD 211 (230)
T ss_dssp TTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCSS
T ss_pred CCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhhC
Confidence 346678999999999 999999999999998887654
No 275
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=28.96 E-value=1.2e+02 Score=21.34 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=20.6
Q ss_pred chHHHHHHhcCChHHHHHHHhHHHH
Q 014764 240 SMEQLAASLRISRPELQSILMECSL 264 (419)
Q Consensus 240 ~~~e~A~~~~~s~~eLr~~l~~~~~ 264 (419)
+..|+|..+|+|...++..+..+..
T Consensus 33 s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 33 SYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5889999999999998887765544
No 276
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=28.96 E-value=94 Score=26.22 Aligned_cols=50 Identities=16% Similarity=0.071 Sum_probs=0.0
Q ss_pred ccccCccchHHHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHHH
Q 014764 338 RTLRLPNHLHERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNAT 387 (419)
Q Consensus 338 r~irip~~l~e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~l 387 (419)
+....+..-.+...+|..+...| .+.| ...|..+||+..||+.+++-...
T Consensus 7 ~~~~r~~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F 58 (218)
T 3gzi_A 7 SRVGRPSGDTQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYF 58 (218)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHH
T ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHc
No 277
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=28.92 E-value=42 Score=27.02 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=22.2
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ 388 (419)
.++.|+.|+|+.+||+..+|..++.
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4678999999999999999999875
No 278
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=28.87 E-value=78 Score=26.87 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=27.6
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
..+|..+...| .+.| ...|+.+||+..||+.+++-..
T Consensus 25 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~ 63 (214)
T 2zb9_A 25 RAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKW 63 (214)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 44555554444 5555 5789999999999999999774
No 279
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=28.79 E-value=71 Score=25.02 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=26.9
Q ss_pred HHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhH
Q 014764 228 KLRLKERLGCEPSMEQLAASLRISRPELQSILME 261 (419)
Q Consensus 228 ~~~l~~~lg~~p~~~e~A~~~~~s~~eLr~~l~~ 261 (419)
..-+.+.+..+++.+++|..+|+|...|......
T Consensus 8 ~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 8 EEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3445666777899999999999999888876554
No 280
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=28.44 E-value=61 Score=27.46 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred cccCccchHHHHHHHHHHHHHH--HhcCCCccHHHHHHHcCCCHHHH
Q 014764 339 TLRLPNHLHERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKV 383 (419)
Q Consensus 339 ~irip~~l~e~~~~I~~a~~~L--~e~gRepS~eEIAe~LGIS~etV 383 (419)
...++....+...+|..+...| +.=....|+++||+..||+.+++
T Consensus 1 ~~~M~~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~ 47 (197)
T 2f07_A 1 PFTMPKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTF 47 (197)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHH
No 281
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=28.42 E-value=73 Score=26.34 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.5
Q ss_pred HHHHHHHHHHH-HhcCCCccHHHHHHHcCCCHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~gRepS~eEIAe~LGIS~etVr~~ 386 (419)
..+|..+...| .+. ...|+++||+..||+.+++-..
T Consensus 16 r~~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t~Y~~ 52 (190)
T 2v57_A 16 RRAILDAAMLVLADH-PTAALGDIAAAAGVGRSTVHRY 52 (190)
T ss_dssp HHHHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHH
Confidence 34455555555 455 8889999999999999999874
No 282
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=28.41 E-value=18 Score=32.60 Aligned_cols=55 Identities=22% Similarity=0.157 Sum_probs=34.7
Q ss_pred cccCccchHHHHHHHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014764 339 TLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (419)
Q Consensus 339 ~irip~~l~e~~~~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~rark~lSL 396 (419)
...+|-.......++..+.... ..|+..||.+||+.+|.+...|-.++.+ +++++
T Consensus 70 ~f~lpl~~t~Fq~~Vw~~l~~I-P~G~t~TYg~iA~~~G~p~RaVG~Al~~--Np~~i 124 (167)
T 2g7h_A 70 LISYKLEVPEFTKKVLDIVKDI-EFGKTLTYGDIAKKLNTSPRAVGMALKR--NPLPL 124 (167)
T ss_dssp TCCBCSCCSSCCHHHHHHHTTC-CTTCCEEHHHHHHHHTSCHHHHHHHHHT--CSCTT
T ss_pred ccCcccccHHHHHHHHHHhcCC-CCCCEeeHHHHHHHhCCCHHHHHHHHHh--CCCCC
Confidence 3344544422334455554433 3589999999999999997777776653 44443
No 283
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=28.39 E-value=33 Score=28.44 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=21.9
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ 388 (419)
.+..|+.|+|+.+|++..+|.++..
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3567999999999999999998765
No 284
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=28.30 E-value=50 Score=26.07 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.3
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+..|||+.+|++..+|...+...
T Consensus 39 ~~~~~ela~~l~is~stvs~~L~~L 63 (106)
T 1r1u_A 39 EASVGHISHQLNLSQSNVSHQLKLL 63 (106)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4699999999999999999988764
No 285
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=28.25 E-value=46 Score=29.72 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
|...+..+||+.+|+|...|++++.+-
T Consensus 33 G~~L~e~~La~~lgVSRtpVREAL~~L 59 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVRDALLQL 59 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCEeCHHHHHHHHCCCHHHHHHHHHHH
Confidence 455599999999999999999999874
No 286
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=28.24 E-value=2.4e+02 Score=22.94 Aligned_cols=69 Identities=6% Similarity=-0.170 Sum_probs=44.8
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHH
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 299 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~ 299 (419)
|-.+-| ...|..++|+.+|+|+..+..-...-.+-+..++..+...+............+..+.+...+
T Consensus 14 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (194)
T 3bqz_B 14 LFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYN 83 (194)
T ss_dssp HHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCCSHHHHHHHHH
T ss_pred HHHHcCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 444455 458899999999999999998777666667777776666555444443333344444444333
No 287
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=28.20 E-value=31 Score=25.51 Aligned_cols=24 Identities=4% Similarity=0.036 Sum_probs=21.4
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
...|.+|+|+.+|++..+|.+...
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 467999999999999999999865
No 288
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.16 E-value=91 Score=26.55 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=27.2
Q ss_pred HHHHHH-HHHHHhcCCCccHHHHHHHcCCCHHHHHHH
Q 014764 351 GLIRNA-KLRLEEKGVTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 351 ~~I~~a-~~~L~e~gRepS~eEIAe~LGIS~etVr~~ 386 (419)
.+|..+ ..-+.+.|...|+++||+..||+.+++...
T Consensus 23 ~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tlY~~ 59 (215)
T 2hku_A 23 DALFTAATELFLEHGEGVPITQICAAAGAHPNQVTYY 59 (215)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHH
Confidence 444444 444456676679999999999999999875
No 289
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=28.12 E-value=88 Score=27.22 Aligned_cols=39 Identities=28% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 348 ERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 348 e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+...+|..+...| .+.| ...|+++||+..||+.+++-..
T Consensus 43 ~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~ 83 (229)
T 3bni_A 43 ERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRF 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHH
Confidence 3445555555555 5555 5689999999999999999774
No 290
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=28.09 E-value=1.9e+02 Score=23.91 Aligned_cols=75 Identities=12% Similarity=0.049 Sum_probs=47.8
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHh
Q 014764 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305 (419)
Q Consensus 231 l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrA 305 (419)
|-.+-|- ..|..++|+.+|+++..+..-...-.+.+..+++.+...+............+..+-+...+..+++.
T Consensus 28 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (211)
T 3him_A 28 VFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADFPDIAAPDRLMSTVTAYVTW 103 (211)
T ss_dssp HHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4445564 47899999999998888877666555666777776666555555554444455555555444444443
No 291
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=28.09 E-value=79 Score=26.82 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHH
Q 014764 347 HERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKV 383 (419)
Q Consensus 347 ~e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etV 383 (419)
.+...+|..+...| .+.| ...|+++||+..||+.+++
T Consensus 9 ~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~ 47 (210)
T 3vib_A 9 LKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDAL 47 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHH
No 292
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=28.04 E-value=1.1e+02 Score=25.18 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred cCccchHHHHHHHHHHHHHHHhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 341 RLPNHLHERLGLIRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 341 rip~~l~e~~~~I~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+-......+..-+..+..-+.+.| ...|.++||+..|++.+++-..
T Consensus 2 ~~~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~ 48 (194)
T 3dpj_A 2 NAMVQAQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYH 48 (194)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHH
No 293
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=27.95 E-value=50 Score=25.88 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhCcc
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIGKV 393 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rark~ 393 (419)
.+.+..|||+.+|++..+|...+....+.
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34699999999999999999999886554
No 294
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=27.95 E-value=2.6e+02 Score=24.13 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=49.8
Q ss_pred HhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCC-C-CChhhHhhHHHHHHHHhHh
Q 014764 233 ERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNM-G-ADMADLVQGGLIGLLRGIE 307 (419)
Q Consensus 233 ~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~-g-~d~EDLVQEG~IgLlrAIe 307 (419)
.+-|- ..|..++|+.+|++...+..-...-.+-+..++..+...+.......... . .+..+.+...+..+++.+.
T Consensus 58 ~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (236)
T 3q0w_A 58 EDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFG 135 (236)
T ss_dssp HHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccCCHHHHHHHhCCcHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence 34443 67889999999999999998777666677777777766666555544332 2 3566666555555554443
No 295
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=27.95 E-value=73 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=16.7
Q ss_pred CccHHHHHHHcCCCHHHHHHHHH
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ 388 (419)
+.|..++|+.+|++..+|.+.+.
T Consensus 31 gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 31 DINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 45777777777777777777654
No 296
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=27.88 E-value=26 Score=29.77 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=0.0
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
...|.++||..||++.++|..++.+
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 3459999999999999999888754
No 297
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=27.79 E-value=88 Score=24.78 Aligned_cols=27 Identities=4% Similarity=-0.020 Sum_probs=24.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+++..|||+.+|++..+|..++.+.
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~L 60 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNL 60 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 357899999999999999999998874
No 298
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=27.79 E-value=1.8e+02 Score=25.17 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=22.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..|.++||..+|++.++|...+....
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 205 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFV 205 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34999999999999999999988754
No 299
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=27.75 E-value=2.4e+02 Score=22.80 Aligned_cols=78 Identities=14% Similarity=-0.026 Sum_probs=50.6
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHhh
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIer 308 (419)
|-.+-| ...|..++|+.+|+|+..+..-...-.+.+..++..+...+............+..+.+...+..+++.+..
T Consensus 20 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 98 (194)
T 2g7s_A 20 LIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPLEQLRAYIGYWEGCIAD 98 (194)
T ss_dssp HHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcc
Confidence 444455 357899999999999999988777666666667666655554444333333345566666666666655544
No 300
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=27.73 E-value=46 Score=29.44 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=29.8
Q ss_pred hcCCCccHHHHHHHc-----CCCHHHHHHHHHHhCcccccc
Q 014764 362 EKGVTPSVDRIAEYL-----NMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 362 e~gRepS~eEIAe~L-----GIS~etVr~~l~rark~lSLD 397 (419)
..++..|.+|||+.| +++..+|+..+.+.++++...
T Consensus 168 ~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~~ 208 (238)
T 2gwr_A 168 KPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKD 208 (238)
T ss_dssp STTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSS
T ss_pred CCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccC
Confidence 346778999999999 999999999999988877553
No 301
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=27.73 E-value=47 Score=26.50 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
...+..|||+.+|++..+|...+...
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L 62 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQAL 62 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35699999999999999999988764
No 302
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=27.61 E-value=51 Score=25.82 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.6
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+..|||+.+|++..+|...+...
T Consensus 34 ~~~~~ela~~l~is~~tv~~~l~~L 58 (114)
T 2oqg_A 34 DQSASSLATRLPVSRQAIAKHLNAL 58 (114)
T ss_dssp CBCHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999999999999988765
No 303
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=27.50 E-value=89 Score=26.37 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HhcCCCccHHHHHHHcCCCHHHH
Q 014764 347 HERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKV 383 (419)
Q Consensus 347 ~e~~~~I~~a~~~L--~e~gRepS~eEIAe~LGIS~etV 383 (419)
.+...+|..+...| +.=....|+++||+..||+.+++
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~ 46 (204)
T 3anp_C 8 KRRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTF 46 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHHH
No 304
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=27.50 E-value=46 Score=25.88 Aligned_cols=24 Identities=4% Similarity=0.158 Sum_probs=21.3
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
+..|+.|+|+.+||+..+|.+...
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 467999999999999999998864
No 305
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=27.47 E-value=2.1e+02 Score=23.82 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=23.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..+..|||+.+|++..+|..++.+..
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le 84 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLV 84 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 57999999999999999999987753
No 306
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=27.46 E-value=89 Score=26.52 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 349 RLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 349 ~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
...+|..+...| .+.| ...|.++||+..||+.+++-.
T Consensus 15 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~ 53 (199)
T 3crj_A 15 QTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHY 53 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHhh
Confidence 344555555555 5555 678999999999999999865
No 307
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=27.43 E-value=42 Score=27.18 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=22.3
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+.+..+||+.+|++..+|...+.+.
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 4699999999999999999988764
No 308
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=27.31 E-value=68 Score=29.01 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+-|+..|||+.+|+|...|++++.+-
T Consensus 27 ~LpsE~~La~~lgVSRtpVREAL~~L 52 (239)
T 2di3_A 27 HLPSERALSETLGVSRSSLREALRVL 52 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 44578999999999999999999874
No 309
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=27.16 E-value=1.5e+02 Score=26.28 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.7
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..|.++||..+|++.++|...+...+
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~ 202 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLK 202 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 34999999999999999999987653
No 310
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=27.13 E-value=90 Score=24.80 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.5
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+..|||+.||++..+|...+...
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~L 69 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVL 69 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999999988765
No 311
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=26.90 E-value=57 Score=26.97 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=22.5
Q ss_pred CccHHHHHHHc--CCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYL--NMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~L--GIS~etVr~~l~ra 390 (419)
..|..|||+.+ |+|..+|.++++..
T Consensus 27 ~~s~~eLA~~l~~giS~~aVs~rL~~L 53 (111)
T 3b73_A 27 NGSPKELEDRDEIRISKSSVSRRLKKL 53 (111)
T ss_dssp CBCHHHHHTSTTCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 57999999999 99999999998764
No 312
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=26.77 E-value=58 Score=29.71 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
|...+..|||+.+|+|...|++++.+.
T Consensus 49 G~~L~e~~La~~lgVSRtpVREAL~~L 75 (239)
T 2hs5_A 49 GARLSEPDICAALDVSRNTVREAFQIL 75 (239)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCEeCHHHHHHHHCCCHHHHHHHHHHH
Confidence 445599999999999999999999874
No 313
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=26.64 E-value=89 Score=28.05 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=21.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNAT 387 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l 387 (419)
...++.+|+|+.+|+|..||+.=+
T Consensus 24 ~~~~~~~~la~~~~vs~~TiRrDl 47 (190)
T 4a0z_A 24 NPFITDHELSDLFQVSIQTIRLDR 47 (190)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCEeHHHHHHHHCCCHHHHHHHH
Confidence 456799999999999999998854
No 314
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=26.60 E-value=60 Score=28.98 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.1
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
|...+..|||+.+|+|...|++++.+-
T Consensus 37 G~~L~E~~La~~lgVSRtpVREAl~~L 63 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGRNSVREALQRL 63 (222)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHCCCHHHHHHHHHHH
Confidence 444469999999999999999999874
No 315
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=26.51 E-value=2.5e+02 Score=24.55 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=49.0
Q ss_pred hhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccC-CC-CChhhHhhHHHHHHHHhHh
Q 014764 234 RLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN-MG-ADMADLVQGGLIGLLRGIE 307 (419)
Q Consensus 234 ~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~-~g-~d~EDLVQEG~IgLlrAIe 307 (419)
+-|- ..|..++|+.+|++...+..-...-.+-+..+++.+...+......... .. .+..+.+...+..+++.+.
T Consensus 58 ~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 134 (255)
T 3g1o_A 58 DRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFG 134 (255)
T ss_dssp TSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HcCCccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHH
Confidence 3443 5788999999999999999877766666777777766665555544332 22 3666666655555555543
No 316
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=26.49 E-value=45 Score=28.45 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=22.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+|.++||..+|++.++|...+....
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLE 189 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5999999999999999999988754
No 317
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=26.34 E-value=67 Score=25.44 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=25.4
Q ss_pred HHHHhhCCCCchHHHHHHhcCChHHHHHHHhH
Q 014764 230 RLKERLGCEPSMEQLAASLRISRPELQSILME 261 (419)
Q Consensus 230 ~l~~~lg~~p~~~e~A~~~~~s~~eLr~~l~~ 261 (419)
-+.+.+..+++.+++|..+|+|...|...+..
T Consensus 15 ~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 15 LMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34555677899999999999999988876554
No 318
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=26.28 E-value=57 Score=28.85 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=27.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhCcccccc
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIGKVFSLD 397 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rark~lSLD 397 (419)
+.+..+||+.||+|..+|+..+..+.+++-+.
T Consensus 213 g~~~~eia~~l~~s~~tv~~~l~~i~~kl~~~ 244 (258)
T 3p7n_A 213 GLRNKEVAARLGLSEKTVKMHRGLVMEKLNLK 244 (258)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 45899999999999999999998887666544
No 319
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=26.27 E-value=51 Score=26.54 Aligned_cols=25 Identities=8% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|..|+|+.+||+..+|.+...-
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5679999999999999999998653
No 320
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=26.20 E-value=2.7e+02 Score=23.53 Aligned_cols=67 Identities=6% Similarity=-0.017 Sum_probs=42.1
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhH
Q 014764 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQG 297 (419)
Q Consensus 231 l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQE 297 (419)
|-.+-|- ..|.+++|.++|+|+..+..-...=.+-+..+++.+...+............+..+-+..
T Consensus 20 lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~sKe~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (206)
T 1vi0_A 20 VIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATAKEKLAL 87 (206)
T ss_dssp HHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred HHHHhCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 4445564 578999999999999998887766556666666666555444444333333344443333
No 321
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=26.12 E-value=50 Score=25.69 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=21.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|..++|+.+|++..+|.+....
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5679999999999999999988764
No 322
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=26.06 E-value=3.1e+02 Score=23.51 Aligned_cols=78 Identities=10% Similarity=-0.004 Sum_probs=50.9
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccC--CCCChhhHhhHHHHHHHHhHh
Q 014764 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN--MGADMADLVQGGLIGLLRGIE 307 (419)
Q Consensus 231 l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~--~g~d~EDLVQEG~IgLlrAIe 307 (419)
|-.+-|- ..|..++|+.+|+++..+..-...-.+.+..+++.+...+......... ...+..+.+...+..+++.+.
T Consensus 55 l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 134 (229)
T 3bni_A 55 LLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQRNLERYAERVTERLTEAGDGGWRGALDTVLDEYLAMKR 134 (229)
T ss_dssp HHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcChhhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 3334453 4789999999999999998877766666777776666555444433322 345666666666666666655
Q ss_pred h
Q 014764 308 K 308 (419)
Q Consensus 308 r 308 (419)
.
T Consensus 135 ~ 135 (229)
T 3bni_A 135 T 135 (229)
T ss_dssp H
T ss_pred h
Confidence 4
No 323
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=25.95 E-value=55 Score=30.22 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHHHHHHh---cCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 352 LIRNAKLRLEE---KGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 352 ~I~~a~~~L~e---~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+.++..-|.. .....+..|||+.+|++..+|..++...
T Consensus 12 s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L 53 (257)
T 2g7u_A 12 SIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTL 53 (257)
T ss_dssp HHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444543 2345799999999999999999998754
No 324
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=25.84 E-value=82 Score=26.40 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HhcCCCccHHHHHHHcCCCHHHHHHH
Q 014764 347 HERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 347 ~e~~~~I~~a~~~L-~e~gRepS~eEIAe~LGIS~etVr~~ 386 (419)
.+...+|..+...| .+.|-..|+++||+..||+.+++-..
T Consensus 15 ~~~r~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~Y~~ 55 (199)
T 2rek_A 15 RRNYDRIIEAAAAEVARHGADASLEEIARRAGVGSATLHRH 55 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHHHHH
No 325
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=25.82 E-value=71 Score=26.29 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=23.5
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
+..++..|||+.+|++..+|..++.+.
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~L 86 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRL 86 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHH
Confidence 446799999999999999999988764
No 326
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=25.76 E-value=2.7e+02 Score=22.56 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=47.0
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCC-CChhhHhhHHH
Q 014764 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG-ADMADLVQGGL 299 (419)
Q Consensus 231 l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g-~d~EDLVQEG~ 299 (419)
|-.+-|- ..|..++|+.+|+|...+..-...-.+-+..+++.+...+........... .+..+.+...+
T Consensus 22 l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (191)
T 3on4_A 22 LIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVLSDISNNSSLSAKEKIQKFF 92 (191)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHHHhCcccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHHHH
Confidence 3344554 488999999999999999988776666777777777666666655554444 45554444433
No 327
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=25.65 E-value=53 Score=23.31 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=22.5
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHhCccccc
Q 014764 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSL 396 (419)
Q Consensus 368 S~eEIAe~LGIS~etVr~~l~rark~lSL 396 (419)
++.++|+.||++..+|...++.. ..+++
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~~-~~~~l 42 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAG-RSIEI 42 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTT-CCEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHcCC-CCCCe
Confidence 99999999999999999987533 33444
No 328
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=25.60 E-value=82 Score=26.88 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=22.1
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+..|||+.+|++..+|..++.+.
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~L 110 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRL 110 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3799999999999999998887764
No 329
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=25.54 E-value=2.9e+02 Score=23.01 Aligned_cols=75 Identities=9% Similarity=0.030 Sum_probs=45.2
Q ss_pred HHHHhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHH
Q 014764 230 RLKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304 (419)
Q Consensus 230 ~l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlr 304 (419)
+|-.+-|- ..|.+++|+++|+|...+..-...=.+-+..+++.+..-+............+..+-+...+..+++
T Consensus 25 ~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (204)
T 2ibd_A 25 TLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIVASGLDSRATLEALVTTSYE 100 (204)
T ss_dssp HHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCchhcCHHHHHHHhCCCchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34455664 4789999999999999988876655556666666665554443333332334444444443333333
No 330
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=25.53 E-value=57 Score=26.10 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHH
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~r 389 (419)
+.++.|+|+..||+..++..+..-
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 779999999999999999988643
No 331
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=25.44 E-value=88 Score=25.84 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=25.9
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
.+|..+...| .+.| ..+|+++||+..|++.+++-.
T Consensus 14 ~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~ 50 (196)
T 3he0_A 14 DQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYR 50 (196)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHH
Confidence 3444444444 5555 668999999999999999875
No 332
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=25.18 E-value=91 Score=24.12 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.5
Q ss_pred HHHHhhCC-CCchHHHHHHhcCChHHHHHHHhH
Q 014764 230 RLKERLGC-EPSMEQLAASLRISRPELQSILME 261 (419)
Q Consensus 230 ~l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~ 261 (419)
-+.+.+.. +++.+++|..+|+|...|...+..
T Consensus 10 ~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 10 IIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34555666 789999999999999988876664
No 333
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=25.17 E-value=90 Score=24.43 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=26.8
Q ss_pred HHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhH
Q 014764 228 KLRLKERLGCEPSMEQLAASLRISRPELQSILME 261 (419)
Q Consensus 228 ~~~l~~~lg~~p~~~e~A~~~~~s~~eLr~~l~~ 261 (419)
..-+.+.+..+++.+++|..+|+|...|......
T Consensus 11 ~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 11 LSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3345566777899999999999999988876654
No 334
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=25.08 E-value=96 Score=26.13 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HhcCCCccHHHHHHHcCCCHHHH
Q 014764 347 HERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKV 383 (419)
Q Consensus 347 ~e~~~~I~~a~~~L--~e~gRepS~eEIAe~LGIS~etV 383 (419)
.+...+|..+...| ..-....|+.+||+..||+.+++
T Consensus 11 ~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 49 (189)
T 3vp5_A 11 DEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSF 49 (189)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHH
No 335
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=25.03 E-value=3e+02 Score=22.90 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=50.8
Q ss_pred HHHhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhH
Q 014764 231 LKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (419)
Q Consensus 231 l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAI 306 (419)
|-..-|- ..|..++|..+|+|...+..-...-.+-+..+++.+...+............+..+.+...+-..+..+
T Consensus 23 lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 99 (216)
T 3f0c_A 23 RFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILNSGIDATALLKKYVKLRSLHF 99 (216)
T ss_dssp HHHHHCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 4445564 578999999999999999987776666777777777666655555544444466666655554444433
No 336
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=24.94 E-value=2.6e+02 Score=23.32 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=34.8
Q ss_pred HHHHhhCCCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 014764 230 RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVM 278 (419)
Q Consensus 230 ~l~~~lg~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~ 278 (419)
+|-.+-|-..|..++|+.+|+|...+..-...-.+-+..++..+...+.
T Consensus 24 ~lf~~~G~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~ 72 (196)
T 2qwt_A 24 DTFAAEGLGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRRIV 72 (196)
T ss_dssp HHHHHTCTTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3555566678999999999999999888766555556666655544443
No 337
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=24.80 E-value=51 Score=27.15 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=26.7
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
..+|..+...| .+.| ..+|+++||+..||+.+++-..
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (195)
T 3pas_A 10 RIAFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIY 48 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHHH
Confidence 34454444444 4444 5679999999999999999874
No 338
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=24.77 E-value=99 Score=25.51 Aligned_cols=35 Identities=29% Similarity=0.232 Sum_probs=26.1
Q ss_pred HHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 352 LIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 352 ~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+|..+...| .+.| ...|.++||+..||+.+++-..
T Consensus 6 ~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~ 42 (179)
T 2eh3_A 6 RILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFH 42 (179)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHHH
Confidence 444444444 5555 5789999999999999999764
No 339
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=24.76 E-value=51 Score=28.24 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.2
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+|.++||..+|++.++|...+....
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~ 171 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELA 171 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4999999999999999999887653
No 340
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=24.75 E-value=49 Score=30.92 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.6
Q ss_pred hCCCCchHHHHHHhcCChHHHHHHHhH
Q 014764 235 LGCEPSMEQLAASLRISRPELQSILME 261 (419)
Q Consensus 235 lg~~p~~~e~A~~~~~s~~eLr~~l~~ 261 (419)
.|++|+.+++|..+|++.+++++.|..
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~ 59 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQ 59 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHh
Confidence 789999999999999999998876543
No 341
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=24.69 E-value=57 Score=26.58 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=23.1
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
...+..|||+.||++..+|...+...
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L 80 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTL 80 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45699999999999999999988764
No 342
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=24.55 E-value=99 Score=25.71 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 352 LIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 352 ~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+|..+...| .+.| ...|+++||+..||+.+++-..
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~ 43 (190)
T 3vpr_A 7 RILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHH 43 (190)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 444444444 5555 5679999999999999999764
No 343
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=24.48 E-value=1.4e+02 Score=25.23 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 348 ERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 348 e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+...+|..+...| .+.| ...|+.+||+..||+.+++-..
T Consensus 30 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~ 70 (222)
T 3bru_A 30 LAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHY 70 (222)
T ss_dssp GHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhh
Confidence 3344555555554 5665 5789999999999999999874
No 344
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.48 E-value=49 Score=27.23 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=25.8
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
.+|..+...| .+.| ...|..+||+..|++.+++-..
T Consensus 9 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 46 (191)
T 1sgm_A 9 EKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHF 46 (191)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHS
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHH
Confidence 3444444444 5555 5689999999999999888654
No 345
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=24.41 E-value=60 Score=27.56 Aligned_cols=27 Identities=22% Similarity=0.134 Sum_probs=23.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..++.+|||+.+|+|...|++++....
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~ 53 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLR 53 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999987754
No 346
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=24.33 E-value=2.7e+02 Score=22.19 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=19.5
Q ss_pred cHHHHHHHcCCCHHHHHHHHHH
Q 014764 368 SVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 368 S~eEIAe~LGIS~etVr~~l~r 389 (419)
...+.|+.|||+..++...++.
T Consensus 73 n~~~AA~~LGIsR~TL~rkLkk 94 (98)
T 1eto_A 73 NQTRAALMMGINRGTLRKKLKK 94 (98)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHH
Confidence 6789999999999999988765
No 347
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=24.30 E-value=82 Score=25.96 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=25.8
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
.+|..+...| .+.| ...|..+||+..|++.+++-.
T Consensus 13 ~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 49 (197)
T 3rd3_A 13 QHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYH 49 (197)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTT
T ss_pred HHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHH
Confidence 4444454444 5555 568999999999999999865
No 348
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=24.27 E-value=93 Score=25.68 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 349 RLGLIRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 349 ~~~~I~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+..-+..+..-+.+.| ...|+++||+..||+.+++-..
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (206)
T 3dew_A 10 RSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYH 48 (206)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHH
No 349
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=24.23 E-value=1.8e+02 Score=23.88 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 348 ERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 348 e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+...+|..+...| .+.| ...|+.+||+..||+.+++-..
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 57 (206)
T 3kz9_A 17 KRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNY 57 (206)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHH
Confidence 3444555555555 5665 5589999999999999999874
No 350
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.16 E-value=55 Score=24.98 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=20.8
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
+..|..|+|+.+|++..+|.+...
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 467999999999999999988653
No 351
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=24.13 E-value=3.3e+02 Score=23.90 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.6
Q ss_pred CccHHHHHHHcCCCHHHHHHHHH
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ 388 (419)
+.+..+||+.||++..+|..++.
T Consensus 175 G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 175 GQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHh
Confidence 46999999999999999998764
No 352
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=24.03 E-value=1.1e+02 Score=25.86 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 349 RLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 349 ~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
...+|..+...| .+.| ...|.++||+..||+.+++-..
T Consensus 15 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~ 54 (204)
T 2ibd_A 15 RRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHH 54 (204)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHHh
Confidence 344555555555 5555 5689999999999999999774
No 353
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=23.96 E-value=60 Score=26.74 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=25.9
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
.+|..+...| .+.| ...|+++||+..||+.+++-.
T Consensus 13 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (196)
T 3col_A 13 VKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYL 49 (196)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 4444554444 5555 467999999999999999876
No 354
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=23.94 E-value=60 Score=26.22 Aligned_cols=25 Identities=4% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|..|+|+.+|++..+|.....-
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5679999999999999999987653
No 355
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=23.92 E-value=57 Score=25.78 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=21.7
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~r 389 (419)
.++.|..++|+.+|++..+|......
T Consensus 22 ~~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 22 PLDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45679999999999999999887653
No 356
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=23.83 E-value=1.1e+02 Score=25.51 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred cCccchHHHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 341 RLPNHLHERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 341 rip~~l~e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
++.....+...+|..+...| .+.| ...|+++||+..||+.+++-..
T Consensus 1 ~mr~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 48 (199)
T 2o7t_A 1 GMRADALKRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRN 48 (199)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHH
No 357
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=23.81 E-value=1.2e+02 Score=25.63 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=26.1
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
.+|..+...| .+.| ...|.++||+..|++.+++-.
T Consensus 12 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~ 48 (203)
T 3cdl_A 12 ESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYN 48 (203)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHH
Confidence 3444444444 5555 578999999999999999976
No 358
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=23.77 E-value=47 Score=25.38 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=18.6
Q ss_pred cHHHHHHHcCCCHHHHHHHHH
Q 014764 368 SVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 368 S~eEIAe~LGIS~etVr~~l~ 388 (419)
+..++|+.|||+..+|.+=+.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 589999999999999988754
No 359
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=23.76 E-value=65 Score=24.88 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.4
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+.++.+||+.+||+..+|..-+....
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 46999999999999999998876553
No 360
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=23.73 E-value=1.1e+02 Score=26.09 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
.+|..+...| .+.| ...|.++||+..||+.+++-..
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~ 51 (210)
T 2wui_A 14 DGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGH 51 (210)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHH
Confidence 4455554444 5665 5679999999999999999874
No 361
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=23.72 E-value=74 Score=28.44 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=22.9
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+.|.++||+.+|+|..+|.+++....
T Consensus 52 G~t~eeiA~~lG~s~s~V~~~LrLl~ 77 (178)
T 1r71_A 52 GKKKGDIAKEIGKSPAFITQHVTLLD 77 (178)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHGGGS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHc
Confidence 57999999999999999999887653
No 362
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.41 E-value=1.2e+02 Score=25.71 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HhcCCCccHHHHHHHcCCCHHHH
Q 014764 347 HERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKV 383 (419)
Q Consensus 347 ~e~~~~I~~a~~~L--~e~gRepS~eEIAe~LGIS~etV 383 (419)
.+...+|..+...| ..=....|.++||+..||+.+++
T Consensus 11 ~~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtl 49 (205)
T 1rkt_A 11 DKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGV 49 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchh
No 363
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=23.37 E-value=55 Score=28.30 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=29.8
Q ss_pred hcCCCccHHHHHHHcC-----CCHHHHHHHHHHhCccccc
Q 014764 362 EKGVTPSVDRIAEYLN-----MSQKKVRNATEAIGKVFSL 396 (419)
Q Consensus 362 e~gRepS~eEIAe~LG-----IS~etVr~~l~rark~lSL 396 (419)
..++..|.+|||+.++ ++..+|+..+.+.++++..
T Consensus 166 ~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 166 NKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp TTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 3466689999999998 9999999999998877644
No 364
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=23.35 E-value=1.5e+02 Score=26.06 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=21.6
Q ss_pred HhhCCCCchHHHHHHhcCChHHHHHHH
Q 014764 233 ERLGCEPSMEQLAASLRISRPELQSIL 259 (419)
Q Consensus 233 ~~lg~~p~~~e~A~~~~~s~~eLr~~l 259 (419)
+..|.+||..|+|+++|++...+...+
T Consensus 19 ~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 19 EKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp HHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 457889999999999999977655433
No 365
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=23.26 E-value=55 Score=27.92 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=22.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|.++||..+|++.++|...+..-+
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~ 192 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLE 192 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4899999999999999999988754
No 366
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.21 E-value=58 Score=27.05 Aligned_cols=26 Identities=15% Similarity=-0.041 Sum_probs=22.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+.+..+||+.+|++..+|...+.+..
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46999999999999999999887653
No 367
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=23.10 E-value=1.3e+02 Score=24.92 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 348 ERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 348 e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+...+|..+...| .+.| ..+|+++||+..||+.+++-..
T Consensus 17 ~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (208)
T 3cwr_A 17 VVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRF 57 (208)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHH
Confidence 3445555555554 5555 5679999999999999999874
No 368
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=23.06 E-value=79 Score=26.82 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHH
Q 014764 347 HERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKV 383 (419)
Q Consensus 347 ~e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etV 383 (419)
.+...+|..+...| .+.| ...|.++||+..||+.+++
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtl 48 (210)
T 2xdn_A 10 QETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAI 48 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHH
No 369
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=23.04 E-value=70 Score=26.84 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=23.2
Q ss_pred HHHHHH-HHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 351 GLIRNA-KLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 351 ~~I~~a-~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
.+|..+ ...| .+.| ..+|+.+||+..||+.+++-.
T Consensus 27 ~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~ 64 (212)
T 3nxc_A 27 EEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYR 64 (212)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHH
Confidence 444455 4446 4445 678999999999999999876
No 370
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=23.00 E-value=2.8e+02 Score=21.90 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=30.7
Q ss_pred cCCCCCCHHHHHHHHHHHHccCcchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhH
Q 014764 201 VSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILME 261 (419)
Q Consensus 201 ~~~~lLt~~eE~eL~rkik~Gd~l~~~~~~l~~~lg~~p~~~e~A~~~~~s~~eLr~~l~~ 261 (419)
.....||+.|- +.+..+..|.. ..|+|..+++|...++..+..
T Consensus 30 ~~~~~Lt~re~-~Vl~l~~~G~s-----------------~~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 30 YGDKRLSPKES-EVLRLFAEGFL-----------------VTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp CSSSSCCHHHH-HHHHHHHHTCC-----------------HHHHHHHHTSCHHHHHHHHHH
T ss_pred cccCCCCHHHH-HHHHHHHcCCC-----------------HHHHHHHHCcCHHHHHHHHHH
Confidence 34455888765 45555666664 789999999999988876553
No 371
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=22.98 E-value=57 Score=27.47 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=25.4
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
.+|..+...| .+.| ...|+++||+..||+.+++-.
T Consensus 16 ~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~ 52 (195)
T 2iu5_A 16 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYN 52 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGG
T ss_pred HHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHH
Confidence 4445554444 5555 457999999999999988765
No 372
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=22.88 E-value=97 Score=24.19 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=26.2
Q ss_pred HHHHHhhC-CCCchHHHHHHhcCChHHHHHHHhH
Q 014764 229 LRLKERLG-CEPSMEQLAASLRISRPELQSILME 261 (419)
Q Consensus 229 ~~l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~ 261 (419)
.-+.+.+. .+++.+++|..+|+|...|......
T Consensus 10 ~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 10 QYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34555666 7889999999999999988876664
No 373
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=22.86 E-value=58 Score=29.81 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.7
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
|...+..|||+.+|+|..+|++++...
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L 73 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQL 73 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHH
Confidence 555599999999999999999998764
No 374
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=22.79 E-value=93 Score=26.86 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=20.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
+..|++|+|+.+|++..+|.++..
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 567999999999999999988754
No 375
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=22.77 E-value=1.3e+02 Score=27.04 Aligned_cols=39 Identities=36% Similarity=0.445 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 352 LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 352 ~I~~a~~~L~e~gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
.+.+++..+.+.+..++..+||+.||++..+|..++.+.
T Consensus 10 ~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~L 48 (230)
T 1fx7_A 10 MYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRM 48 (230)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 344455555433444455999999999999999988774
No 376
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=22.62 E-value=1.6e+02 Score=24.96 Aligned_cols=37 Identities=24% Similarity=0.122 Sum_probs=27.5
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
..+|..+...| .+.| ...|.++||+..||+.+++-..
T Consensus 14 r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~ 52 (211)
T 3bhq_A 14 DREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKH 52 (211)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 34455554554 5555 5689999999999999999774
No 377
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=22.55 E-value=1e+02 Score=29.53 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=24.8
Q ss_pred cCCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 363 KGVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 363 ~gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.+..+|.+|||+.+|+|..+|++.+....
T Consensus 16 ~~~~~s~~eLa~~l~vS~~ti~r~l~~L~ 44 (321)
T 1bia_A 16 NGEFHSGEQLGETLGMSRAAINKHIQTLR 44 (321)
T ss_dssp TSSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35668999999999999999999887643
No 378
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=22.47 E-value=77 Score=25.80 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=27.2
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
..+|..+...| .+.| ...|+.+||+..||+.+++-..
T Consensus 6 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 6 SVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHH
Confidence 44555555555 4444 4579999999999999999874
No 379
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=22.46 E-value=1.3e+02 Score=25.11 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred ccccCccchHHHHHHHHHHHHHHHhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 338 RTLRLPNHLHERLGLIRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 338 r~irip~~l~e~~~~I~~a~~~L~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+..+.+.....+..-+..+..-+.+.| ...|+.+||+..|++.+++-..
T Consensus 17 ~~~~~~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 66 (217)
T 3mvp_A 17 RKPKQERSIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAY 66 (217)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred cCcccccchhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHH
No 380
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=22.46 E-value=3.4e+02 Score=22.67 Aligned_cols=76 Identities=13% Similarity=-0.003 Sum_probs=46.4
Q ss_pred HHHhhCCC-CchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhHh
Q 014764 231 LKERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (419)
Q Consensus 231 l~~~lg~~-p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAIe 307 (419)
|-.+-|-. .|..++|+.+|+++..+..-...-.+-+..+++.+...+....... ....+..+-+...+..++..+.
T Consensus 15 lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 91 (212)
T 3rh2_A 15 LFNEHGERTITTNHIAAHLDISPGNLYYHFRNKEDIIRCIFDQYEQHLLLGFKPY-ADQKVDLELLMSYFDAMFYTMW 91 (212)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTCCC-SSCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhh-cccCCcHHHHHHHHHHHHHHHH
Confidence 44455644 7889999999999999988776655666667766665555444433 2223334444444444444433
No 381
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=22.46 E-value=1.9e+02 Score=25.91 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=22.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|.++||..+|++.++|...+...+
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~ 242 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLE 242 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4899999999999999999988754
No 382
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=22.42 E-value=57 Score=27.18 Aligned_cols=17 Identities=6% Similarity=0.305 Sum_probs=10.8
Q ss_pred cHHHHHHHcCCCHHHHH
Q 014764 368 SVDRIAEYLNMSQKKVR 384 (419)
Q Consensus 368 S~eEIAe~LGIS~etVr 384 (419)
+...||+.+||+.+..-
T Consensus 61 ~l~~iA~~f~V~~~yl~ 77 (123)
T 3qwg_A 61 TMAALANFFRIKAAYFT 77 (123)
T ss_dssp HHHHHHHHTTSCTHHHH
T ss_pred HHHHHHHHhCCCHHHHc
Confidence 45667777777765543
No 383
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=22.38 E-value=67 Score=27.15 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=21.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
++.|..|+|+.+||+..+|.++..-
T Consensus 80 ~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5679999999999999999998764
No 384
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=22.35 E-value=1.2e+02 Score=25.76 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNAT 387 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~l 387 (419)
..+|..+...| .+.| ...|+.+||+..||+.+++-...
T Consensus 17 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F 56 (221)
T 3c2b_A 17 QNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWF 56 (221)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHhC
Confidence 34455554444 5555 56799999999999999998753
No 385
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=22.29 E-value=1.2e+02 Score=25.36 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=27.3
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
..+|..+...| .+.| ...|+.+||+..||+.+++-..
T Consensus 18 r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 56 (213)
T 2qtq_A 18 RDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYY 56 (213)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHh
Confidence 34455554444 5555 5789999999999999999875
No 386
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=22.14 E-value=51 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+..++.+|||+.+|+|...|++++....
T Consensus 28 ~~~~~~~~iA~~~~i~~~~l~kil~~L~ 55 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKIMSYLK 55 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456999999999999999999987653
No 387
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=22.13 E-value=3.4e+02 Score=23.41 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=43.2
Q ss_pred HHHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHHhH
Q 014764 230 RLKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (419)
Q Consensus 230 ~l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlrAI 306 (419)
+|-.+-| ...|..++|+.+|++...+..-...-.+.+..+++.....+............+..|-+...+...++.+
T Consensus 18 ~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (213)
T 3ni7_A 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIHHLIMIWLDAL 95 (213)
T ss_dssp HHHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCccccCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 3445566 4688999999999999998887664444445555444333332222111122344555555544444443
No 388
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=22.08 E-value=81 Score=25.72 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=21.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
...|+.|+|+.+|++..+|.+...-
T Consensus 83 ~glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 83 LSLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 4679999999999999999998753
No 389
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=21.96 E-value=62 Score=30.06 Aligned_cols=40 Identities=5% Similarity=0.044 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhc---CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 351 GLIRNAKLRLEEK---GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 351 ~~I~~a~~~L~e~---gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+.++..-|.-. ....+..|||+.+|++..+|..++...
T Consensus 18 ~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL 60 (265)
T 2ia2_A 18 QSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTL 60 (265)
T ss_dssp HHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455555555533 345699999999999999999998753
No 390
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=21.95 E-value=3.4e+02 Score=22.45 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=53.5
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHcc-CCCCChhhHhhHHHHHHHHhHh
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYD-NMGADMADLVQGGLIGLLRGIE 307 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~-~~g~d~EDLVQEG~IgLlrAIe 307 (419)
|-.+-| ...|..++|..+|+|...+..-...-.+-+..+++.+...+........ ....+..+.+...+..++..+.
T Consensus 22 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (216)
T 3s5r_A 22 LFAEQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEERIGRIIDMIWEPVTGEEDDPLIMVRDLVNRIVNTCE 100 (216)
T ss_dssp HHHHHCTTTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHHHTHHHHHHHHHTTCCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHh
Confidence 444566 4579999999999999999988776667778888877777666665554 3445556666555555554443
No 391
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=21.84 E-value=1.3e+02 Score=26.17 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=27.2
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
..|..+...| .+.| ...|+.+||+..||+.+++...
T Consensus 10 ~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~ 47 (213)
T 3ni7_A 10 DAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHH
Confidence 4455554444 6666 6789999999999999998764
No 392
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=21.81 E-value=3.1e+02 Score=22.18 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=22.8
Q ss_pred chHHHHHHhcCChHHHHHHHhHHHHHHHH
Q 014764 240 SMEQLAASLRISRPELQSILMECSLAREK 268 (419)
Q Consensus 240 ~~~e~A~~~~~s~~eLr~~l~~~~~A~e~ 268 (419)
|..|+|..+|+|...++..+.........
T Consensus 40 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 40 SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 48899999999999999887765554433
No 393
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=21.77 E-value=2.8e+02 Score=23.10 Aligned_cols=74 Identities=14% Similarity=0.024 Sum_probs=45.9
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHHHHHHH
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~IgLlr 304 (419)
|-.+-| ...|..++|+.+|+|...+..-...-.+-+..+++.+...+............+..+-+...+..++.
T Consensus 23 lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 97 (212)
T 2ras_A 23 IVEERGGAGLTLSELAARAGISQANLSRYFETREDLMEAIADYWFHPMVEIMEDVLASDLPPRRKMYEFFARRFV 97 (212)
T ss_dssp HHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHTTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 444456 46889999999999998888776665566666666665555544443333333444544444444443
No 394
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=21.66 E-value=55 Score=28.68 Aligned_cols=25 Identities=20% Similarity=0.103 Sum_probs=22.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|.++||..+|++.++|..++....
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~ 203 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLK 203 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHG
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4899999999999999999988754
No 395
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=21.62 E-value=2.5e+02 Score=24.53 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=41.8
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHHH
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 299 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG~ 299 (419)
|-.+-| ...|..++|+.+|+++..+..-...-.+-+..+++.+...+............+..+-+...+
T Consensus 58 lf~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 127 (245)
T 3aqt_A 58 LMAERGVDNVGIAEITEGANIGTGTFYNYFPDREQLLQAVAEDAFESVGIALDQVLTKLDDPAEVFAGSL 127 (245)
T ss_dssp HHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHHHHHHHHHHHHHHTTGGGSSCHHHHHHHHH
T ss_pred HHHhcCcccCcHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 333445 367889999999999888887666555666666666655555444443333334444443333
No 396
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=21.58 E-value=66 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.8
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.+|.++||..+|++.++|...+....
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~ 202 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFA 202 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 35999999999999999999988754
No 397
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=21.54 E-value=58 Score=24.73 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=20.6
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHH
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~r 389 (419)
.++.|+|+.+|+|..+++.....
T Consensus 6 ~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 6 LRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp EEHHHHHHTTSTTHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHh
Confidence 48999999999999999988665
No 398
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=21.46 E-value=3.6e+02 Score=22.57 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHhhCC-CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 014764 230 RLKERLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281 (419)
Q Consensus 230 ~l~~~lg~-~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIA 281 (419)
+|-.+-|- ..|.+++|+++|+|...+..-...=.+-+..+++.+...+....
T Consensus 23 ~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~~~~~~~~~~~~~~ 75 (211)
T 3bhq_A 23 AAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLSTASQVNDII 75 (211)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 35556674 48999999999999999988777666667777776665554433
No 399
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=21.43 E-value=1.4e+02 Score=24.88 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=27.0
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
.+|..+...| .+.| ...|+.+||+..||+.+++-..
T Consensus 20 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (207)
T 2rae_A 20 DRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRY 57 (207)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhh
Confidence 4444444444 5555 5689999999999999999875
No 400
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=21.35 E-value=54 Score=27.96 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=22.2
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|.++||..+|++.++|...+....
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~ 164 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLR 164 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4999999999999999999887654
No 401
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=21.30 E-value=59 Score=25.29 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.9
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
...+..|||+.+|++..+|...+...
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L 60 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVL 60 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34799999999999999999988764
No 402
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=21.27 E-value=90 Score=25.00 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHhhCCCCchHHHHHHhcCChHHHHHHHhH
Q 014764 230 RLKERLGCEPSMEQLAASLRISRPELQSILME 261 (419)
Q Consensus 230 ~l~~~lg~~p~~~e~A~~~~~s~~eLr~~l~~ 261 (419)
-+.+.+..+++.+++|..+|+|...|...+..
T Consensus 15 ~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 15 VINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34455667889999999999999988876654
No 403
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=21.24 E-value=57 Score=30.22 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhc---CCCccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 351 GLIRNAKLRLEEK---GVTPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 351 ~~I~~a~~~L~e~---gRepS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..+.++..-|.-. ....+..|||+.+|++..+|..++...
T Consensus 20 ~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL 62 (260)
T 2o0y_A 20 RSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATM 62 (260)
T ss_dssp HHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455555555432 346799999999999999999998754
No 404
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=21.24 E-value=62 Score=22.91 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCHHHHHHHHH
Q 014764 369 VDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 369 ~eEIAe~LGIS~etVr~~l~ 388 (419)
+.+||..+||+..+|..-..
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 99999999999999987654
No 405
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=21.23 E-value=86 Score=25.68 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=27.0
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
..+|..+...| .+.| ...|..+||+..||+.+++-..
T Consensus 12 r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 50 (191)
T 3on4_A 12 KERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYH 50 (191)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhc
Confidence 34444444444 5555 4579999999999999999774
No 406
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=21.19 E-value=64 Score=28.14 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=23.6
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~rar 391 (419)
..++.+|||+.+|+|...|++++...+
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~ 69 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLR 69 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999987643
No 407
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=21.18 E-value=62 Score=24.96 Aligned_cols=25 Identities=4% Similarity=0.129 Sum_probs=20.7
Q ss_pred CCccHHHHHHHcCCCHHH----HHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKK----VRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~et----Vr~~l~r 389 (419)
++.|..|+|+.+|++..+ |......
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 456999999999999999 7776543
No 408
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=21.13 E-value=65 Score=27.74 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=21.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHh
Q 014764 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (419)
Q Consensus 366 epS~eEIAe~LGIS~etVr~~l~ra 390 (419)
..|++|+|+.+||+.++++.-+.+-
T Consensus 95 adTleeLA~~~gid~~~L~~TV~~y 119 (160)
T 2lfc_A 95 KGSLESAAEQAGIVVDELVQTVKNY 119 (160)
T ss_dssp CSSHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3499999999999999888776654
No 409
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=21.13 E-value=1.2e+02 Score=25.34 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=27.0
Q ss_pred HHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 351 GLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 351 ~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
.+|..+...| .+.| ...|+.+||+..||+.+++-..
T Consensus 13 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 50 (216)
T 3s5r_A 13 ELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYY 50 (216)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHH
Confidence 3444444444 5555 6689999999999999999874
No 410
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=21.12 E-value=1.5e+02 Score=25.52 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 348 ERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 348 e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
+...+|..+...| .+.| ...|+++||+..||+.+++...
T Consensus 35 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~~ 75 (221)
T 3g7r_A 35 EARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRH 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
No 411
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=21.08 E-value=93 Score=26.21 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHH
Q 014764 347 HERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKV 383 (419)
Q Consensus 347 ~e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etV 383 (419)
......|..+...| .+.| ...|.++||+..||+.+++
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tl 49 (197)
T 2hyt_A 11 EETRATLLATARKVFSERGYADTSMDDLTAQASLTRGAL 49 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
No 412
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=21.06 E-value=64 Score=27.94 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=22.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.|.++||..+|++.++|...+...+
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4899999999999999999988754
No 413
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.05 E-value=1.7e+02 Score=25.36 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 348 ERLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 348 e~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
.....|..+...| .+.| ...|+.+||+..||+..++-.
T Consensus 16 ~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~ 55 (216)
T 2oi8_A 16 QVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYR 55 (216)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHH
Confidence 3444555555554 5555 568999999999999999876
No 414
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=20.87 E-value=84 Score=26.77 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHHH
Q 014764 349 RLGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 349 ~~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~~ 386 (419)
...+|..+...| .+.| ...|+++||+..||+.+++-..
T Consensus 29 ~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~ 68 (215)
T 2qko_A 29 RRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNY 68 (215)
T ss_dssp HHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHh
Confidence 334455554554 5555 5689999999999999998774
No 415
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=20.80 E-value=57 Score=25.95 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=20.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
++.|+.|+|+.+|++..+|..+..
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 356999999999999999988764
No 416
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=20.80 E-value=62 Score=26.88 Aligned_cols=24 Identities=0% Similarity=0.123 Sum_probs=18.7
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATE 388 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~ 388 (419)
++.|++|+|+.+|++..++..+..
T Consensus 15 ~gltq~elA~~~gis~~~is~iE~ 38 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLVHIEN 38 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 567888888888888888877654
No 417
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=20.78 E-value=66 Score=28.34 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=22.4
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
+|.++||..+|++.++|...+....
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~ 211 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQ 211 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHH
Confidence 4999999999999999999988754
No 418
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=20.76 E-value=1.1e+02 Score=26.37 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=21.0
Q ss_pred CCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 365 RepS~eEIAe~LGIS~etVr~~l~r 389 (419)
+..|.+|+|+.+|++..+|.++..-
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5679999999999999999887654
No 419
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=20.73 E-value=3.6e+02 Score=22.33 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=39.3
Q ss_pred HHHhhC-CCCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCCCCChhhHhhHH
Q 014764 231 LKERLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGG 298 (419)
Q Consensus 231 l~~~lg-~~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~g~d~EDLVQEG 298 (419)
|-.+-| ...|.+++|+++|+|+..+..-...=.+-+..+++.+...+............+..+-+...
T Consensus 26 lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (203)
T 3ccy_A 26 MFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYGSNEPKTRFLQI 94 (203)
T ss_dssp HHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHcCcccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 444456 35788999999999888777655544455556665555444443333323333444433333
No 420
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.57 E-value=3e+02 Score=22.16 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=23.9
Q ss_pred chHHHHHHhcCChHHHHHHHhHHHHHHHHHH
Q 014764 240 SMEQLAASLRISRPELQSILMECSLAREKLV 270 (419)
Q Consensus 240 ~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LI 270 (419)
+..|+|..+|+|...++..+..........+
T Consensus 43 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 43 SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999888776655444433
No 421
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=20.40 E-value=1e+02 Score=26.52 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=18.0
Q ss_pred cHHHHHHHcCCCHHHHHHHHHH
Q 014764 368 SVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 368 S~eEIAe~LGIS~etVr~~l~r 389 (419)
|+.|+|+.+|++..+|.+.+..
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 8888888888888888887654
No 422
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=20.32 E-value=65 Score=27.20 Aligned_cols=15 Identities=7% Similarity=0.317 Sum_probs=7.9
Q ss_pred HHHHHHHcCCCHHHH
Q 014764 369 VDRIAEYLNMSQKKV 383 (419)
Q Consensus 369 ~eEIAe~LGIS~etV 383 (419)
...||+.+||+.+..
T Consensus 64 l~~iA~~f~V~~~yl 78 (135)
T 3r1f_A 64 MAALANFFRIKAAYF 78 (135)
T ss_dssp HHHHHHHHTSCTHHH
T ss_pred HHHHHHHhCCCHHHH
Confidence 455555555554443
No 423
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=20.23 E-value=97 Score=25.44 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred CccchHHHHHHHHHHHHHH--HhcCCCccHHHHHHHcCCCHHHH
Q 014764 342 LPNHLHERLGLIRNAKLRL--EEKGVTPSVDRIAEYLNMSQKKV 383 (419)
Q Consensus 342 ip~~l~e~~~~I~~a~~~L--~e~gRepS~eEIAe~LGIS~etV 383 (419)
+.........+|..+...+ +.=....|.++||+..|++.+++
T Consensus 1 m~~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tl 44 (180)
T 2fd5_A 1 MSDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGF 44 (180)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGG
T ss_pred CCCccccCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHH
No 424
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=20.22 E-value=1.4e+02 Score=26.51 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=22.0
Q ss_pred CCCccHHHHHHHcCCCHHHHHHHHHH
Q 014764 364 GVTPSVDRIAEYLNMSQKKVRNATEA 389 (419)
Q Consensus 364 gRepS~eEIAe~LGIS~etVr~~l~r 389 (419)
.-..|..+||+.||+|-+.+..++..
T Consensus 22 ~G~~~t~~Iak~LGlShg~aq~~Ly~ 47 (165)
T 2vxz_A 22 DGCKTTSLIQQRLGLSHGRAKALIYV 47 (165)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCccHHHHHHHhCCcHHHHHHHHHH
Confidence 34459999999999999999998754
No 425
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=20.16 E-value=1.6e+02 Score=24.27 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=26.0
Q ss_pred HHHHHHHH-HHHhcCCCccHHHHHHHcCCCHHHHHHH
Q 014764 351 GLIRNAKL-RLEEKGVTPSVDRIAEYLNMSQKKVRNA 386 (419)
Q Consensus 351 ~~I~~a~~-~L~e~gRepS~eEIAe~LGIS~etVr~~ 386 (419)
.+|..+.. -+.+.|-..|.++||+..|++.+++-..
T Consensus 12 ~~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~tly~~ 48 (190)
T 3jsj_A 12 ERLLEAAAALTYRDGVGIGVEALCKAAGVSKRSMYQL 48 (190)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHH
Confidence 34444444 4455553399999999999999999874
No 426
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=20.16 E-value=2.1e+02 Score=25.26 Aligned_cols=28 Identities=4% Similarity=0.224 Sum_probs=24.4
Q ss_pred cCCCccHHHHHHHcC--CCHHHHHHHHHHh
Q 014764 363 KGVTPSVDRIAEYLN--MSQKKVRNATEAI 390 (419)
Q Consensus 363 ~gRepS~eEIAe~LG--IS~etVr~~l~ra 390 (419)
.+..++.++||+.++ ++..+|+.++...
T Consensus 19 ~~~pvs~~~La~~~~~~~~~~~v~~~l~~L 48 (162)
T 1t6s_A 19 SEEPVNLQTLSQITAHKFTPSELQEAVDEL 48 (162)
T ss_dssp CSSCBCHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCcCCCHHHHHHHHHHH
Confidence 467789999999999 9999999988654
No 427
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=20.13 E-value=70 Score=27.01 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=26.1
Q ss_pred HHHHHHHHHHH-HhcC-CCccHHHHHHHcCCCHHHHHH
Q 014764 350 LGLIRNAKLRL-EEKG-VTPSVDRIAEYLNMSQKKVRN 385 (419)
Q Consensus 350 ~~~I~~a~~~L-~e~g-RepS~eEIAe~LGIS~etVr~ 385 (419)
..+|..+...| .+.| ...|+++||+..||+.+++-.
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 53 (203)
T 3ccy_A 16 RDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYH 53 (203)
T ss_dssp HHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTT
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeee
Confidence 34455555555 5555 678999999999999988754
No 428
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=20.12 E-value=3.8e+02 Score=22.31 Aligned_cols=72 Identities=4% Similarity=-0.074 Sum_probs=49.3
Q ss_pred CCchHHHHHHhcCChHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHccCC-CCChhhHhhHHHHHHHHhHhhc
Q 014764 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNM-GADMADLVQGGLIGLLRGIEKF 309 (419)
Q Consensus 238 ~p~~~e~A~~~~~s~~eLr~~l~~~~~A~e~LIe~yl~LV~sIAkry~~~-g~d~EDLVQEG~IgLlrAIerF 309 (419)
..|..++|..+|++...+..-...-.+-+..++..+...+.......... ..+..+-+...+..++..+..+
T Consensus 50 ~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 122 (222)
T 3bru_A 50 SVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPLARLRLFTRMAEEGMARH 122 (222)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 57889999999999999998777666667777777666655544444333 3356666666666666655544
No 429
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=20.09 E-value=60 Score=21.88 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=20.8
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHHhC
Q 014764 367 PSVDRIAEYLNMSQKKVRNATEAIG 391 (419)
Q Consensus 367 pS~eEIAe~LGIS~etVr~~l~rar 391 (419)
.++.|+|++||++.+++.+.+....
T Consensus 3 ~rv~~lAkel~~~~k~l~~~l~~~g 27 (49)
T 1nd9_A 3 VTIKTLAAERQTSVERLVQQFADAG 27 (49)
T ss_dssp ECTTHHHHHHSSSHHHHHHHHHHHT
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHcC
Confidence 3567999999999999999887553
No 430
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=20.05 E-value=1.3e+02 Score=25.33 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcC-CCccHHHHHHHcCCCHHHH
Q 014764 349 RLGLIRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKV 383 (419)
Q Consensus 349 ~~~~I~~a~~~L~e~g-RepS~eEIAe~LGIS~etV 383 (419)
+..-+..+..-+.+.| ...|.++||+..||+.+++
T Consensus 9 r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtl 44 (197)
T 2gen_A 9 KDEILQAALACFSEHGVDATTIEMIRDRSGASIGSL 44 (197)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHH
Done!