BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014766
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UN9|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
pdb|1UN9|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
Length = 552
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 156/389 (40%), Positives = 209/389 (53%), Gaps = 24/389 (6%)
Query: 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKV 60
MLTAA+CGDVFASP VD++L I AVTG GCLLIV NYTGDRLNFGLAAE+A+ GY V
Sbjct: 73 MLTAAVCGDVFASPSVDAVLTAIQAVTGEAGCLLIVKNYTGDRLNFGLAAEKARRLGYNV 132
Query: 61 EIVIVGDDCALPPPRGIAGRRGLAGTILVNKIXXXXXXXXXXXXXXXXXXKRASEMVGTM 120
E++IVGDD +LP + RG+AGTILV+KI + A+ ++
Sbjct: 133 EMLIVGDDISLPDNKH---PRGIAGTILVHKIAGYFAERGYNLATVLREAQYAASNTFSL 189
Query: 121 GVALSVCTLPGQV-TSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTET 179
GVALS C LP + + R PG ELG+GIHGEPGA+V D Q VV+ ++ ++L+
Sbjct: 190 GVALSSCHLPQETDAAPRHHPGHAELGMGIHGEPGASVIDTQNSAQVVNLMVDKLLAA-- 247
Query: 180 NYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239
+P T R+ +MIN LG V E+ I + + + L H + S +T+LDM
Sbjct: 248 --LPET--GRLAVMINNLGGVSVAEMAIIT-RELASSPL-HSRIDWLIGPASLVTALDMK 301
Query: 240 GFSISIMKADEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQ 299
GFS++ + +E I K L + +WP V PP +I + S + + Q
Sbjct: 302 GFSLTAIVLEESIEKALLTEVETSNWPTPV----PPREITCVVSSHASARVE------FQ 351
Query: 300 LSQQGHXXXXXXXXXXXXXXNLRDRLNEWDSKVGDGDCGSTMYRGATAILE-DKKKYYPL 358
S +L LN D+KVGDGD GST A I ++ PL
Sbjct: 352 PSANA-LVAGIVELVTATLSDLETHLNALDAKVGDGDTGSTFAAAAREIASLLHRQQLPL 410
Query: 359 NDAAETVNEIGASIRRVMGGTSGILYHIF 387
N+ A IG + VMGG+SG+L IF
Sbjct: 411 NNLATLFALIGERLTVVMGGSSGVLMSIF 439
>pdb|1UN8|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
pdb|1UN8|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
Length = 552
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 156/389 (40%), Positives = 209/389 (53%), Gaps = 24/389 (6%)
Query: 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKV 60
MLTAA+CGDVFASP VD++L I AVTG GCLLIV NYTGDRLNFGLAAE+A+ GY V
Sbjct: 73 MLTAAVCGDVFASPSVDAVLTAIQAVTGEAGCLLIVKNYTGDRLNFGLAAEKARRLGYNV 132
Query: 61 EIVIVGDDCALPPPRGIAGRRGLAGTILVNKIXXXXXXXXXXXXXXXXXXKRASEMVGTM 120
E++IVGDD +LP + RG+AGTILV+KI + A+ ++
Sbjct: 133 EMLIVGDDISLPDNKH---PRGIAGTILVHKIAGYFAERGYNLATVLREAQYAASNTFSL 189
Query: 121 GVALSVCTLPGQV-TSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTET 179
GVALS C LP + + R PG ELG+GIHGEPGA+V D Q VV+ ++ ++L+
Sbjct: 190 GVALSSCHLPQETDAAPRHHPGHAELGMGIHGEPGASVIDTQNSAQVVNLMVDKLLAA-- 247
Query: 180 NYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239
+P T R+ +MIN LG V E+ I + + + L H + S +T+LDM
Sbjct: 248 --LPET--GRLAVMINNLGGVSVAEMAIIT-RELASSPL-HSRIDWLIGPASLVTALDMK 301
Query: 240 GFSISIMKADEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQ 299
GFS++ + +E I K L + +WP V PP +I + S + + Q
Sbjct: 302 GFSLTAIVLEESIEKALLTEVETSNWPTPV----PPREITCVVSSHASARVE------FQ 351
Query: 300 LSQQGHXXXXXXXXXXXXXXNLRDRLNEWDSKVGDGDCGSTMYRGATAILE-DKKKYYPL 358
S +L LN D+KVGDGD GST A I ++ PL
Sbjct: 352 PSANA-LVAGIVELVTATLSDLETHLNALDAKVGDGDTGSTFAAAAREIASLLHRQQLPL 410
Query: 359 NDAAETVNEIGASIRRVMGGTSGILYHIF 387
N+ A IG + VMGG+SG+L IF
Sbjct: 411 NNLATLFALIGERLTVVMGGSSGVLMSIF 439
>pdb|1OI2|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI2|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1UOD|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
pdb|1UOD|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
Length = 366
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 134/284 (47%), Gaps = 22/284 (7%)
Query: 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKV 60
ML+ A G++F SP D I V G G LLI+ NYTGD LNF A E G KV
Sbjct: 78 MLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKV 137
Query: 61 EIVIVGDDCALPPPRGIAGRRGLAGTILVNKIXXXXXXXXXXXXXXXXXXKRASEMVGTM 120
V++ DD A+ AGRRG+A T+L+ K+ ++ + ++
Sbjct: 138 TTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSI 197
Query: 121 GVALSVCTLPGQ-VTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQIL---- 175
G+AL CT+P S L +ME G+GIHGEPG +D V + +L
Sbjct: 198 GIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLVNGS 257
Query: 176 ----------------STETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE 219
+ P+ G+RV+ ++N LGATP+ EL + Q +
Sbjct: 258 YHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQ-Q 316
Query: 220 HGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAP 263
GL +ER G++ TSLDM GFSI+++K D+ L DA P
Sbjct: 317 AGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTP 360
>pdb|1UOE|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
pdb|1UOE|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
Length = 366
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 134/284 (47%), Gaps = 22/284 (7%)
Query: 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKV 60
ML+ A G++F SP D I V G G LLI+ NYTGD LNF A E G KV
Sbjct: 78 MLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKV 137
Query: 61 EIVIVGDDCALPPPRGIAGRRGLAGTILVNKIXXXXXXXXXXXXXXXXXXKRASEMVGTM 120
V++ DD A+ AGRRG+A T+L+ K+ ++ + ++
Sbjct: 138 TTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSI 197
Query: 121 GVALSVCTLPGQ-VTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQIL---- 175
G+AL CT+P S L +ME G+GIHGEPG +D V + +L
Sbjct: 198 GIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDNTVDEMFDTLLVNGS 257
Query: 176 ----------------STETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE 219
+ P+ G+RV+ ++N LGATP+ EL + Q +
Sbjct: 258 YHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQ-Q 316
Query: 220 HGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAP 263
GL +ER G++ TSLDM GFSI+++K D+ L DA P
Sbjct: 317 AGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTP 360
>pdb|3PNK|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNK|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNL|A Chain A, Crystal Structure Of E.coli Dha Kinase Dhak-dhal Complex
Length = 357
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 136/288 (47%), Gaps = 24/288 (8%)
Query: 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKV 60
ML+ A G++F SP D I V G G LLI+ NYTGD LNF A E G KV
Sbjct: 69 MLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKV 128
Query: 61 EIVIVGDDCALPPPRGIAGRRGLAGTILVNKIXXXXXXXXXXXXXXXXXXKRASEMVGTM 120
V++ DD A+ AGRRG+A T+L+ K+ ++ + ++
Sbjct: 129 TTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSI 188
Query: 121 GVALSVCTLPGQ-VTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQIL---- 175
G+AL CT+P S L +ME G+GIHGEPG +D V + +L
Sbjct: 189 GIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLVNGS 248
Query: 176 ----------------STETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE 219
+ P+ G+RV+ ++N LGATP+ EL + Q +
Sbjct: 249 YHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQ-Q 307
Query: 220 HGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAP--HW 265
GL +ER G++ TSLDM GFSI+++K D+ L DA P +W
Sbjct: 308 AGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNW 355
>pdb|3PNO|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNQ|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
Length = 357
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 136/288 (47%), Gaps = 24/288 (8%)
Query: 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKV 60
ML+ A G++F SP D I V G G LLI+ NYTGD LNF A E G KV
Sbjct: 69 MLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKV 128
Query: 61 EIVIVGDDCALPPPRGIAGRRGLAGTILVNKIXXXXXXXXXXXXXXXXXXKRASEMVGTM 120
V++ DD A+ AGRRG+A T+L+ K+ ++ + ++
Sbjct: 129 TTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSI 188
Query: 121 GVALSVCTLPGQ-VTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQIL---- 175
G+AL CT+P S L +ME G+GIHGEPG +D V + +L
Sbjct: 189 GIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLVNGS 248
Query: 176 ----------------STETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE 219
+ P+ G+RV+ ++N LGATP+ EL + Q +
Sbjct: 249 YHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQ-Q 307
Query: 220 HGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAP--HW 265
GL +ER G++ TSLDM GFSI+++K D+ L DA P +W
Sbjct: 308 AGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNW 355
>pdb|3PNM|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
Length = 357
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 136/288 (47%), Gaps = 24/288 (8%)
Query: 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKV 60
ML+ A G++F SP D I V G G LLI+ NYTGD LNF A E G KV
Sbjct: 69 MLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKV 128
Query: 61 EIVIVGDDCALPPPRGIAGRRGLAGTILVNKIXXXXXXXXXXXXXXXXXXKRASEMVGTM 120
V++ DD A+ AGRRG+A T+L+ K+ ++ + ++
Sbjct: 129 TTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSI 188
Query: 121 GVALSVCTLPGQ-VTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQIL---- 175
G+AL CT+P S L +ME G+GIHGEPG +D V + +L
Sbjct: 189 GIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLVNGS 248
Query: 176 ----------------STETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE 219
+ P+ G+RV+ ++N LGATP+ EL + Q +
Sbjct: 249 YHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQ-Q 307
Query: 220 HGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAP--HW 265
GL +ER G++ TSLDM GFSI+++K D+ L DA P +W
Sbjct: 308 AGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNW 355
>pdb|3CT4|A Chain A, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
pdb|3CT4|B Chain B, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
pdb|3CT4|C Chain C, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
Length = 332
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 142/271 (52%), Gaps = 15/271 (5%)
Query: 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKV 60
ML+AA+CG +F SP D I I + G LLI+ NY GD +NF +A E A+ E KV
Sbjct: 70 MLSAAVCGAIFTSPTPDQIYEAIKSADEGAGVLLIIKNYLGDVMNFEMAREMAEMEEIKV 129
Query: 61 EIVIVGDDCALPPPRGIAGRRGLAGTILVNKIXXXXXXXXXXXXXXXXXXKRASEMVGTM 120
E +IV DD A+ GRRG+AGT+LV+KI + + + T+
Sbjct: 130 EQIIVDDDIAVENSLYTQGRRGVAGTVLVHKILGAAAHQEASLDEIKDLADKVVKNIKTI 189
Query: 121 GVALSVCTL-----PGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQIL 175
G+ALS T+ PG V D ++E G+GIH EPG ++ + + ++ + L
Sbjct: 190 GLALSAATVPEVGKPGFVLDDN----EIEYGVGIHSEPGYRREKMKTSYELATELVGK-L 244
Query: 176 STETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTS 235
E + G + +++NG+GATP+ME I V L E + + G++MTS
Sbjct: 245 KEEFKF---EAGQKYGILVNGMGATPLMEQFIFMND-VAKLLTEENIEILFKKVGNYMTS 300
Query: 236 LDMAGFSISIMK-ADEVILKHLDATTKAPHW 265
+DMAG S++++K D+ LK+L+ K W
Sbjct: 301 IDMAGLSLTMIKLEDDQWLKNLNEDVKTISW 331
>pdb|2IU6|A Chain A, Regulation Of The Dha Operon Of Lactococcus Lactis
pdb|2IU6|B Chain B, Regulation Of The Dha Operon Of Lactococcus Lactis
Length = 336
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 131/266 (49%), Gaps = 4/266 (1%)
Query: 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKV 60
ML AA+ G +F P +IL I V G +I+ N+ D F A ++A++EG V
Sbjct: 66 MLAAAVTGPLFIPPKSKNILKAIRQVNSGKGVFVIIKNFEADLKEFNEAIKEARTEGIDV 125
Query: 61 EIVIVGDDCALPPPRGIAGRRGLAGTILVNKIXXXXXXXXXXXXXXXXXXKRASEMVGTM 120
++ DD ++ RG+AGTIL++KI S + T+
Sbjct: 126 RYIVSHDDISVNAYNFHKRHRGVAGTILLHKILGAFAKEGGSIDEIEQLALSLSPEIYTL 185
Query: 121 GVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETN 180
GVAL+ P Q TS L ++ G+GIHGEPG V + + + ++ + L E N
Sbjct: 186 GVALAPVHFPHQKTSFVLAEDEVSFGIGIHGEPGYRVEKFEGSERIAIELVNK-LKAEIN 244
Query: 181 YVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMAG 240
+ N +L++NGLG+T +MEL + L+LE GL+V+ G+ MTS DM+G
Sbjct: 245 WQKKANKN-YILLVNGLGSTTLMELYSFQYDVMRLLELE-GLSVKFCKVGNLMTSCDMSG 302
Query: 241 FSISIMKA-DEVILKHLDATTKAPHW 265
S+++ D L +L+ T A W
Sbjct: 303 ISLTLCSVKDPKWLDYLNVPTGAFAW 328
>pdb|2IU4|A Chain A, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq
pdb|2IU4|B Chain B, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq
Length = 336
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 130/266 (48%), Gaps = 4/266 (1%)
Query: 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKV 60
ML AA+ G +F P +IL I V G +I+ N+ D F A ++A++EG V
Sbjct: 66 MLAAAVTGPLFIPPKSKNILKAIRQVNSGKGVFVIIKNFEADLKEFNEAIKEARTEGIDV 125
Query: 61 EIVIVGDDCALPPPRGIAGRRGLAGTILVNKIXXXXXXXXXXXXXXXXXXKRASEMVGTM 120
++ DD ++ RG+AGTIL++KI S + T+
Sbjct: 126 RYIVSHDDISVNAYNFHKRHRGVAGTILLHKILGAFAKEGGSIDEIEQLALSLSPEIYTL 185
Query: 121 GVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETN 180
GVAL+ P Q TS L ++ G+GI GEPG V + + + ++ + L E N
Sbjct: 186 GVALAPVHFPHQKTSFVLAEDEVSFGIGIXGEPGYRVEKFEGSERIAIELVNK-LKAEIN 244
Query: 181 YVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMAG 240
+ N +L++NGLG+T +MEL + L+LE GL+V+ G+ MTS DM+G
Sbjct: 245 WQKKANKN-YILLVNGLGSTTLMELYSFQYDVMRLLELE-GLSVKFCKVGNLMTSCDMSG 302
Query: 241 FSISIMKA-DEVILKHLDATTKAPHW 265
S+++ D L +L+ T A W
Sbjct: 303 ISLTLCSVKDPKWLDYLNVPTGAFAW 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,777,222
Number of Sequences: 62578
Number of extensions: 400139
Number of successful extensions: 968
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 21
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)