Query 014766
Match_columns 419
No_of_seqs 246 out of 1549
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:18:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2426 Dihydroxyacetone kinas 100.0 1E-124 3E-129 947.0 38.6 412 1-418 71-496 (582)
2 PRK14479 dihydroxyacetone kina 100.0 1E-122 2E-127 979.4 46.5 405 1-418 67-474 (568)
3 TIGR02361 dak_ATP dihydroxyace 100.0 6E-122 1E-126 974.2 46.8 414 1-418 66-491 (574)
4 PTZ00375 dihydroxyacetone kina 100.0 3E-121 6E-126 966.8 45.9 405 1-418 70-489 (584)
5 PRK14481 dihydroxyacetone kina 100.0 2E-103 3E-108 781.6 30.0 262 1-267 68-330 (331)
6 TIGR02363 dhaK1 dihydroxyaceto 100.0 2E-103 5E-108 780.0 29.6 260 1-265 69-329 (329)
7 TIGR02362 dhaK1b probable dihy 100.0 5E-103 1E-107 776.7 29.6 260 1-265 65-326 (326)
8 PF02733 Dak1: Dak1 domain; I 100.0 4E-104 8E-109 785.8 21.1 267 1-268 52-325 (325)
9 PRK14483 DhaKLM operon coactiv 100.0 7E-103 1E-107 775.6 29.6 260 1-265 67-329 (329)
10 PRK11468 dihydroxyacetone kina 100.0 8E-103 2E-107 779.3 30.1 266 1-268 68-355 (356)
11 COG2376 DAK1 Dihydroxyacetone 100.0 3.8E-77 8.2E-82 590.6 21.4 256 1-265 67-323 (323)
12 PRK10005 dihydroxyacetone kina 99.9 1.6E-25 3.5E-30 212.3 14.4 113 303-418 4-116 (210)
13 TIGR02365 dha_L_ycgS dihydroxy 99.9 2.4E-24 5.2E-29 201.9 13.7 108 308-418 2-109 (194)
14 TIGR03599 YloV DAK2 domain fus 99.8 1.6E-19 3.4E-24 191.9 13.5 109 307-418 1-110 (530)
15 PF02734 Dak2: DAK2 domain; I 99.7 5.9E-18 1.3E-22 156.3 10.6 85 331-418 1-86 (175)
16 COG1461 Predicted kinase relat 99.6 1.7E-14 3.8E-19 151.4 13.3 114 302-418 5-119 (542)
17 COG2376 DAK1 Dihydroxyacetone 98.6 8.3E-09 1.8E-13 103.6 0.7 91 307-397 19-118 (323)
18 TIGR03599 YloV DAK2 domain fus 91.8 15 0.00033 40.0 18.9 179 4-230 337-519 (530)
19 PRK11377 dihydroxyacetone kina 81.2 11 0.00023 40.6 10.1 175 15-221 48-240 (473)
20 TIGR02364 dha_pts dihydroxyace 77.8 12 0.00026 33.0 7.7 79 15-113 44-124 (125)
21 PRK09314 bifunctional 3,4-dihy 73.1 4.5 9.7E-05 41.6 4.3 57 5-62 253-314 (339)
22 PF00925 GTP_cyclohydro2: GTP 66.7 4.5 9.7E-05 37.3 2.5 56 4-59 51-141 (169)
23 PRK14484 phosphotransferase ma 63.1 14 0.0003 32.7 4.7 77 15-113 44-120 (124)
24 PRK12485 bifunctional 3,4-dihy 61.9 9.2 0.0002 39.9 4.0 60 4-63 256-345 (369)
25 TIGR00762 DegV EDD domain prot 60.9 38 0.00083 33.3 8.1 95 12-122 60-157 (275)
26 TIGR00505 ribA GTP cyclohydrol 58.3 14 0.00031 34.6 4.3 34 4-37 50-87 (191)
27 PF13684 Dak1_2: Dihydroxyacet 57.2 2.2E+02 0.0049 28.8 17.6 176 4-225 119-297 (313)
28 PRK00393 ribA GTP cyclohydrola 56.9 17 0.00036 34.5 4.5 34 4-37 53-90 (197)
29 PF02645 DegV: Uncharacterised 54.8 36 0.00078 33.6 6.7 185 12-235 61-266 (280)
30 cd00641 GTP_cyclohydro2 GTP cy 51.9 23 0.00049 33.3 4.5 33 5-37 53-89 (193)
31 PF00975 Thioesterase: Thioest 51.3 27 0.00059 32.2 5.0 75 145-235 31-106 (229)
32 PTZ00397 macrophage migration 50.3 32 0.00068 29.3 4.8 41 190-230 59-99 (116)
33 cd00615 Orn_deC_like Ornithine 48.9 42 0.00091 33.0 6.1 54 12-69 138-191 (294)
34 PLN02831 Bifunctional GTP cycl 45.4 21 0.00046 38.2 3.6 37 4-40 291-331 (450)
35 PRK08815 GTP cyclohydrolase; P 43.7 21 0.00045 37.3 3.2 39 4-43 224-266 (375)
36 PRK14019 bifunctional 3,4-dihy 43.3 28 0.00061 36.2 4.1 60 4-63 256-342 (367)
37 COG1416 Uncharacterized conser 42.8 52 0.0011 28.7 4.9 71 164-241 13-83 (112)
38 PTZ00450 macrophage migration 41.7 37 0.0008 29.4 3.9 40 191-230 60-99 (113)
39 COG3412 Uncharacterized protei 41.0 44 0.00096 29.8 4.3 80 14-112 44-123 (129)
40 PRK09311 bifunctional 3,4-dihy 40.2 38 0.00083 35.7 4.5 34 4-37 257-294 (402)
41 PRK05340 UDP-2,3-diacylglucosa 37.8 40 0.00086 32.3 3.9 36 5-40 37-81 (241)
42 COG0616 SppA Periplasmic serin 35.1 1.3E+02 0.0029 30.5 7.4 61 165-237 83-143 (317)
43 PF02633 Creatininase: Creatin 33.8 1.9E+02 0.0041 27.7 7.9 61 151-225 72-133 (237)
44 PF01187 MIF: Macrophage migra 33.3 43 0.00092 28.6 3.0 41 190-230 57-97 (114)
45 PF03793 PASTA: PASTA domain; 32.4 75 0.0016 23.6 3.9 30 34-65 1-30 (63)
46 PF02873 MurB_C: UDP-N-acetyle 32.0 64 0.0014 27.6 3.8 34 192-226 66-99 (105)
47 PF02955 GSH-S_ATP: Prokaryoti 31.3 95 0.0021 28.9 5.2 58 179-237 75-159 (173)
48 COG4175 ProV ABC-type proline/ 31.0 70 0.0015 33.2 4.5 119 89-249 10-137 (386)
49 PF08353 DUF1727: Domain of un 30.8 59 0.0013 28.2 3.4 33 9-41 80-112 (113)
50 COG1307 DegV Uncharacterized p 30.7 4.8E+02 0.01 26.1 10.4 193 14-246 64-279 (282)
51 COG1105 FruK Fructose-1-phosph 30.6 1.9E+02 0.0041 29.6 7.5 126 113-262 67-199 (310)
52 PRK09318 bifunctional 3,4-dihy 29.8 43 0.00093 35.2 2.8 40 3-43 239-281 (387)
53 cd01612 APG12_C Ubiquitin-like 28.4 61 0.0013 26.8 3.0 34 7-43 51-84 (87)
54 TIGR01854 lipid_A_lpxH UDP-2,3 28.3 75 0.0016 30.2 4.1 36 5-40 35-79 (231)
55 KOG1526 NADP-dependent isocitr 27.0 44 0.00095 34.2 2.2 129 24-175 267-414 (422)
56 COG0024 Map Methionine aminope 26.6 6.4E+02 0.014 25.0 11.3 124 89-231 24-171 (255)
57 TIGR02326 transamin_PhnW 2-ami 26.1 2.1E+02 0.0045 28.7 7.0 53 10-67 58-111 (363)
58 TIGR00619 sbcd exonuclease Sbc 26.1 2.6E+02 0.0057 27.1 7.5 54 5-60 44-105 (253)
59 PF14552 Tautomerase_2: Tautom 26.0 63 0.0014 26.4 2.6 52 179-230 18-70 (82)
60 COG1732 OpuBC Periplasmic glyc 25.9 1.1E+02 0.0024 31.2 4.8 85 121-237 15-99 (300)
61 PLN03065 isocitrate dehydrogen 24.7 6.6E+02 0.014 27.4 10.6 134 23-175 325-474 (483)
62 cd03465 URO-D_like The URO-D _ 24.6 1.5E+02 0.0033 29.3 5.7 108 11-133 205-316 (330)
63 PRK05647 purN phosphoribosylgl 24.2 1.3E+02 0.0029 28.4 4.9 45 14-63 13-57 (200)
64 TIGR00639 PurN phosphoribosylg 24.1 1.3E+02 0.0028 28.2 4.7 48 10-62 5-55 (190)
65 PRK11340 phosphodiesterase Yae 24.0 1.5E+02 0.0032 29.0 5.4 55 5-59 85-144 (271)
66 PRK09319 bifunctional 3,4-dihy 23.9 78 0.0017 34.9 3.6 38 3-41 261-302 (555)
67 COG0336 TrmD tRNA-(guanine-N1) 23.1 55 0.0012 32.1 2.0 58 16-73 64-133 (240)
68 PF07788 DUF1626: Protein of u 23.1 76 0.0016 25.4 2.5 28 27-59 42-70 (70)
69 cd07385 MPP_YkuE_C Bacillus su 22.4 1.9E+02 0.0041 26.6 5.5 54 5-58 37-92 (223)
70 KOG3439 Protein conjugation fa 22.2 90 0.0019 27.3 2.9 26 13-40 85-110 (116)
71 PRK07198 hypothetical protein; 22.0 1.3E+02 0.0028 31.9 4.6 38 3-41 246-291 (418)
72 PF13500 AAA_26: AAA domain; P 21.7 54 0.0012 30.2 1.6 39 29-67 129-167 (199)
73 TIGR00347 bioD dethiobiotin sy 21.3 1.1E+02 0.0025 26.9 3.7 38 29-66 129-166 (166)
74 COG2100 Predicted Fe-S oxidore 20.7 3.3E+02 0.0072 28.4 7.0 97 7-131 168-267 (414)
75 PRK00115 hemE uroporphyrinogen 20.7 1.2E+02 0.0026 30.8 4.1 106 11-132 221-328 (346)
76 PHA02097 hypothetical protein 20.3 50 0.0011 24.9 0.9 23 25-48 15-37 (59)
77 cd06167 LabA_like LabA_like pr 20.2 2.1E+02 0.0046 24.7 5.1 43 20-66 89-132 (149)
78 cd05013 SIS_RpiR RpiR-like pro 20.2 2.8E+02 0.006 22.9 5.7 57 10-70 42-98 (139)
79 TIGR01822 2am3keto_CoA 2-amino 20.1 2.4E+02 0.0051 28.5 6.1 54 13-70 151-209 (393)
No 1
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-124 Score=946.98 Aligned_cols=412 Identities=48% Similarity=0.754 Sum_probs=380.0
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCC
Q 014766 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAG 79 (419)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~-~~g 79 (419)
||||++||+||||||++|||+|||+|.+.+|+|+|||||||||||||||+||||++|++||+|+|+||||++++++ ++|
T Consensus 71 mLtaai~G~iFASPstkqI~aairaV~~~~GtLlIVKNYTGD~LhFGLAaErara~G~~ve~v~vgDDvavg~~kg~~vG 150 (582)
T KOG2426|consen 71 MLTAAIAGDIFASPSTKQILAAIRAVEGEAGTLLIVKNYTGDRLHFGLAAERARAAGIKVELVAVGDDVAVGRKKGGKVG 150 (582)
T ss_pred hhhhhhhcccccCCcHHHHHHHHHHhccCCceEEEEeccccceeehhhhHHHHHhcCCceEEEEEccccccCCccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999887 899
Q ss_pred ccccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCCCCCCCCcCCCeeEEeccccCCCCccc-c
Q 014766 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAV-A 158 (419)
Q Consensus 80 RRGlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~-~ 158 (419)
||||+||||||||+||+|++|++|++|+++++.+++|+.||||+|+||++||+++.++|+++|||+|||||||||++| .
T Consensus 151 RRGLagTVLvHKIAGAaA~~Gl~Le~va~~ak~v~dn~~Tig~SL~hc~vPG~k~e~eL~~de~ElGmGIHnEpG~~r~~ 230 (582)
T KOG2426|consen 151 RRGLAGTVLVHKIAGAAAAEGLSLEEVAKVAKSVVDNMGTIGVSLDHCSVPGRKPEDELGADEMELGMGIHNEPGVKRIS 230 (582)
T ss_pred cccccceeeeehhhhHHHHccCCHHHHHHHHHHHHHhhhhheeeeeeeccCCCCcccccCccceeecccccCCCCceecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred cCCCHHHHHHHHHHHHHhc--ccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccccc
Q 014766 159 DLQPVDVVVSHVLKQILST--ETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (419)
Q Consensus 159 ~~~~a~~l~~~~l~~l~~~--~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Tsl 236 (419)
+.+|+++||.+||++|+++ +|+|++++++|+||+|||||||+|.|||.+++..+.++|+.+|||.|+|.|.|+|||||
T Consensus 231 p~ps~d~lVs~mL~~ll~~~~drs~V~~~~~d~VVllVNNLGG~S~lEl~~ia~~v~~~L~~~y~I~p~R~~~G~fmTsL 310 (582)
T KOG2426|consen 231 PIPSIDELVSQMLPQLLDPTKDRSYVKFEEGDEVVLLVNNLGGVSNLELGIIAGKVVEQLEDEYGIGPVRTFAGTFMTSL 310 (582)
T ss_pred CCCCHHHHHHHHHHHhcCCccccccccccCCCeEEEEEcCCCCcchhhhHHHHHHHHHHHHhhcCccceEEEeeeeeeec
Confidence 6777999999999999998 49999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeec---------cHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcccccchHHH
Q 014766 237 DMAGFSISIMKA---------DEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVL 307 (419)
Q Consensus 237 ~m~GfSiTll~l---------d~~~~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 307 (419)
||+||||||||. |+.+++|+|+|+++|+||.......| .+..........+ .+.++....+.+.+
T Consensus 311 ng~GfsITll~atka~~~f~~~~s~l~~lda~~~A~~Wp~~~~~~v~-----~~~~~~~s~~~~~-~~~~s~vt~d~~~~ 384 (582)
T KOG2426|consen 311 NGPGFSITLLNATKATKYFDEDTSLLDLLDAPTNAPGWPVAAPGKVP-----TPPISSSSLEHLE-SEKKSGVTVDAQKF 384 (582)
T ss_pred cCCcceEEEEeccccccccCCCccHHHhhhCcccCCCCcccCcccCC-----CCCCCCcchhhcc-cccCCCccccHHHH
Confidence 999999999999 78899999999999999976521111 1110000001111 12223566789999
Q ss_pred HHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhhcCCChHHHHHH
Q 014766 308 EVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKY-YPLNDAAETVNEIGASIRRVMGGTSGILYHI 386 (419)
Q Consensus 308 ~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~Ga~ai~~~l~~~-~~~~~~~~~l~~i~~a~~~~mGGtSG~Lyg~ 386 (419)
..+|.+++++|++.||.||+||+.+||||||+||.||+++|++.+.++ ++.+++.+++++|+..++++||||||+||++
T Consensus 385 ~~~l~~~~~~ii~~Ep~lt~~D~~aGDGDCGtTl~~gaeaI~e~~k~~~~~~~~~~~~v~~is~~ie~sMGGTSG~LY~i 464 (582)
T KOG2426|consen 385 AAALKAVAEAIIESEPHLTELDTIAGDGDCGTTLVRGAEAILEALKNDKLPLDDPAQLVKDISDIIEDSMGGTSGALYSI 464 (582)
T ss_pred HHHHHHHHHHHHhcccchhHHhccccCCcchhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999753 7788999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHhh
Q 014766 387 FCKAAYAKLKASSKSGITSKQCEMIFFIKIVS 418 (419)
Q Consensus 387 ff~a~a~~l~~~~~~~~~~~~~a~al~~ales 418 (419)
||.++++.+++..+++++.+.|++++..+++.
T Consensus 465 ~lsa~aqgl~~~~~~~it~~~~a~al~~alda 496 (582)
T KOG2426|consen 465 FLSAAAQGLKQSGQEEITRKTWAEALKVALDA 496 (582)
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 99999999998767899999999999999875
No 2
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=100.00 E-value=1e-122 Score=979.39 Aligned_cols=405 Identities=40% Similarity=0.589 Sum_probs=364.8
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 014766 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (419)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (419)
||||||||+||||||++||++|||+|++++|||||||||||||||||||+|+|+++||+|++|+|+||||+.++..++||
T Consensus 67 ml~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~~R 146 (568)
T PRK14479 67 MLDAAVCGNVFTSPSADQVYAAIRAADGGAGVLLIVGNYAGDVMNFGLAAELARAEGIDVRTVVVTDDVASAPSGETAGR 146 (568)
T ss_pred ccceeeccCccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHHhhHHHHHHHHHhcCCcEEEEEeCCcccCCCCCcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999655568899
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 014766 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (419)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (419)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|.|+|++||||||||||||||++|.+
T Consensus 147 RG~AG~v~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~tigval~~c~~P~~~~~~f~l~~~e~E~G~GiHgEpG~~~~~ 226 (568)
T PRK14479 147 RGIAGTVLVFKIAGAAAEAGLDLDEVAAIARKANARTRSMGVALDGCTLPGAGEPLFTLPEGEMELGLGIHGEPGIEREA 226 (568)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccCcccCCCCCCCCcCCCCeeEeccccCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 014766 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (419)
Q Consensus 160 ~~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Tsl~m~ 239 (419)
+.++++++++|+++|+++ ++++++|+|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 227 ~~~a~~~~~~~~~~l~~~----~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~-~i~v~~~~vG~~~Tsldm~ 301 (568)
T PRK14479 227 LPTADELADRLVDRILAD----LPLGAGERVAVLVNGLGATPYEELFVVYGAVARLLAAR-GITVVRPEVGEFVTSLDMA 301 (568)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeeecccccCCCC
Confidence 999999999999999986 68899999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcccccchHHHHHHHHHHHHHHH
Q 014766 240 GFSISIMKADEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVLEVTIEAAAEAVV 319 (419)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~li 319 (419)
|||||||++|++|++|||+||++|+||.... ..+... ......+.... ..........+...+++||+++++.|+
T Consensus 302 G~SiTl~~~d~~~~~~ldap~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~a~~l~ 376 (568)
T PRK14479 302 GASLTLMKLDDELEELWDAPADTPAFRRGGA-VEPVEY--VEAAEEDDAEE--PPRASKASRATAANLVAALDAVAEALI 376 (568)
T ss_pred ccEEEeeeCCHHHHHHhCCCCCCCCCCCCCc-ccccCc--ccccccccccc--cccCCccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999966311 001111 00000000000 000011122346889999999999999
Q ss_pred HhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhccCCC--CCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhc
Q 014766 320 NLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPL--NDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKA 397 (419)
Q Consensus 320 ~~e~~Ln~LD~~vGDGD~G~tm~~Ga~ai~~~l~~~~~~--~~~~~~l~~i~~a~~~~mGGtSG~Lyg~ff~a~a~~l~~ 397 (419)
+++++||+||+.+||||||+||.+||+++.+.+++ ... .++.++|+.+++++++.||||||||||+||+++++.+++
T Consensus 377 ~~~d~Ln~LD~~VGDGD~G~nM~~G~~ai~~~l~~-~~~~~~~~~~~l~~i~~all~~~GGtSG~Lys~~f~~~a~~l~~ 455 (568)
T PRK14479 377 DNEDELGELDAVAGDGDHGIGMARGSKAALAAARA-AVEAGAGAGSVLAAAGDAWADHAGGTSGPLWGTALRAAGKALGD 455 (568)
T ss_pred HhHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHhh-ccccCCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999973 332 689999999999999999999999999999999999987
Q ss_pred cCCCCCCHHHHHHHHHHHHhh
Q 014766 398 SSKSGITSKQCEMIFFIKIVS 418 (419)
Q Consensus 398 ~~~~~~~~~~~a~al~~ales 418 (419)
+ ++++.++|+++|.++++.
T Consensus 456 ~--~~l~~~~la~al~~g~~~ 474 (568)
T PRK14479 456 K--DEPTAADFAAAVRAAVDA 474 (568)
T ss_pred C--CCCCHHHHHHHHHHHHHH
Confidence 5 689999999999999875
No 3
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=100.00 E-value=6.5e-122 Score=974.17 Aligned_cols=414 Identities=47% Similarity=0.727 Sum_probs=365.8
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccC-CCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCC-CCC
Q 014766 1 MLTAAICGDVFASPPVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPR-GIA 78 (419)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~-~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~-~~~ 78 (419)
||||||||+||||||++||++|||++++ ++|||||||||||||||||||+|+||++||+|++|+|+||||+++.+ .++
T Consensus 66 ml~aav~G~vFaSPs~~~i~~ai~~~~~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~eg~~v~~v~v~DDva~~~~~~~~~ 145 (574)
T TIGR02361 66 MLTAAVAGDVFASPSTKQILAAIRAVVGSEAGTLLIVKNYTGDRLNFGLAAEKAKAEGYNVEMVIVGDDVSVGRKKGGLV 145 (574)
T ss_pred ccceeeeccccCCCCHHHHHHHHHHhcCCCCcEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCccCCCCccCCCC
Confidence 8999999999999999999999999999 99999999999999999999999999999999999999999998743 478
Q ss_pred CccccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCCCCCCC-CcCCCeeEEeccccCCCCccc
Q 014766 79 GRRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSD-RLGPGKMELGLGIHGEPGAAV 157 (419)
Q Consensus 79 gRRGlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg~~~~~-~l~~~e~E~G~GiHgEpG~~~ 157 (419)
||||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+||+++.| +|++||||||||||||||++|
T Consensus 146 ~RRGlAGtv~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~~~l~~~e~E~G~GiHgEpG~~~ 225 (574)
T TIGR02361 146 GRRGLAGTVLVHKIAGAAAARGLSLAEVAKVAQAAADNLVTIGASLDHCHVPGETEAEPELKEDEMELGMGIHNEPGAKR 225 (574)
T ss_pred CCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeeccccccCCCCCCCCCCCCCceEeccccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999976665 999999999999999999999
Q ss_pred ccCCC-HHHHHHHHHHHHHhcc--cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccc
Q 014766 158 ADLQP-VDVVVSHVLKQILSTE--TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMT 234 (419)
Q Consensus 158 ~~~~~-a~~l~~~~l~~l~~~~--r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~T 234 (419)
.++++ +++++++|+++|++++ |+|++++++|+|+||||||||||+||||++++++.++|++++||+|+|+|+|+|||
T Consensus 226 ~~~~~a~~~l~~~l~~~l~~~~d~r~~~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~~~i~v~~~~~G~~~T 305 (574)
T TIGR02361 226 ISPIPSSDLVVQLMLKKLLDETDKRSYVKFNEGDEVVLLVNNLGGVSNLELGIIADEVVEQLALHYNIIPVRIYSGTFMT 305 (574)
T ss_pred CCCCChHHHHHHHHHHHHhccccccccCCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeeecccc
Confidence 99999 6669999999999863 77899999999999999999999999999999999999888579999999999999
Q ss_pred ccCCCcceEEEeeccH---HHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcccccchHHHHHHH
Q 014766 235 SLDMAGFSISIMKADE---VILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVLEVTI 311 (419)
Q Consensus 235 sl~m~GfSiTll~ld~---~~~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 311 (419)
||||+||||||+++|+ +|++|||+||++|+||.......+........ ..... ...........+...+++||
T Consensus 306 sl~m~G~SlTl~~ld~~~~e~~~~ldap~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~l 381 (574)
T TIGR02361 306 SLNGPGFSITLLNATEAGKSILDLLDAPTEAPGWPVAAYSSKPWREKREVV-SSSAP---ELIEETAVRSYDPQLVAAIL 381 (574)
T ss_pred cCCCCccEEEEEecCCChHHHHHHhCCCCCCcCCCCCCccccccccccccc-ccccc---ccccCCCcccCCHHHHHHHH
Confidence 9999999999999999 99999999999999975321110110000000 00000 00010111123568899999
Q ss_pred HHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 014766 312 EAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKA 390 (419)
Q Consensus 312 ~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~Ga~ai~~~l~~-~~~~~~~~~~l~~i~~a~~~~mGGtSG~Lyg~ff~a 390 (419)
+++|+.|++++++||+||+.+||||||+||.+|++++.+.++. ..+..++.++|..+++++++.||||||||||+||++
T Consensus 382 ~~~~~~l~~~~d~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~~l~~ig~a~~~~~GGtSG~Lyg~~f~~ 461 (574)
T TIGR02361 382 ESGCAALLELEPHLTKLDTKAGDGDCGSTLARGAEAILELLKSKKLPLNDPATLLAQISDVVEGVMGGTSGALYSIFFSA 461 (574)
T ss_pred HHHHHHHHHhHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999872 134468999999999999999999999999999999
Q ss_pred HHHHhhccC--CCCCCHHHHHHHHHHHHhh
Q 014766 391 AYAKLKASS--KSGITSKQCEMIFFIKIVS 418 (419)
Q Consensus 391 ~a~~l~~~~--~~~~~~~~~a~al~~ales 418 (419)
+++.+++.. +++++.++|+++|.+|++.
T Consensus 462 ~a~~l~~~~~~~~~~~~~~~a~al~aa~ea 491 (574)
T TIGR02361 462 AAQSLKQNASKKEEITPEAWAAALKTALDA 491 (574)
T ss_pred HHHHHhhccccccCCCHHHHHHHHHHHHHH
Confidence 999998621 2578999999999999875
No 4
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=100.00 E-value=3e-121 Score=966.84 Aligned_cols=405 Identities=38% Similarity=0.590 Sum_probs=357.4
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 014766 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (419)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (419)
||||||||+||||||++||++|||+|++++|||||||||||||||||||+|+||++||+|++|+|+||||++ +..++||
T Consensus 70 ml~aav~G~vFaSPs~~qi~~ai~~v~~~~Gvl~ivkNYtGD~lnF~lA~e~a~~eGi~v~~v~v~DDva~~-~~~~~~R 148 (584)
T PTZ00375 70 WLTAAVCGSVFASPSTKHVLAAIEYVPNGPGCLLIVKNYTGDILNFELAVEQARARGIQVETVLVADDAAFG-TKDIANR 148 (584)
T ss_pred ccceeecccccCCCCHHHHHHHHHHhcCCCCEEEEecccHHHHhhHHHHHHHHHhCCCcEEEEEeCCccCCC-CCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997 3458899
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCCCCCCCCcCCCeeEEeccccCCCCcccccC
Q 014766 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (419)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~ 160 (419)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+||....|+|++||||||||||||||++|.++
T Consensus 149 RG~AGtv~v~KiaGAaA~~G~~L~ev~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~~~E~G~GIHgEpG~~~~~~ 228 (584)
T PTZ00375 149 RGIAGTVLLYKILGAAAEKGASLTQLKKLADRISSNMRSIGVSLSSCSLPGNDPSSTVPPGTMEVGLGIHGEKGLARIPF 228 (584)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCCCCCCceEecccccCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999954489999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcc--c---CCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccc
Q 014766 161 QPVDVVVSHVLKQILSTE--T---NYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTS 235 (419)
Q Consensus 161 ~~a~~l~~~~l~~l~~~~--r---~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Ts 235 (419)
+++++++++|+++|+++- + +|++++++|+|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+||||
T Consensus 229 ~~a~~l~~~l~~~ll~~~~~~~~~~~~~~~~~d~v~vlvN~LG~t~~~El~i~~~~v~~~l~~~-gi~v~~~~vG~~~TS 307 (584)
T PTZ00375 229 QGAKDLVKFLIGILLGKGKKRGGGKTTAIREGAKVALLVNNLGSTTDLEMSILAHHALRQLAQA-GLTVVGVHSGRLMTS 307 (584)
T ss_pred CCHHHHHHHHHHHHHhhhhccccccccCCCCCCeEEEEEcCCCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEeeeccccc
Confidence 999999999999999851 1 2458889999999999999999999999999999999888 999999999999999
Q ss_pred cCCCcceEEEeeccH-HHHH--------hhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcccccchHH
Q 014766 236 LDMAGFSISIMKADE-VILK--------HLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHV 306 (419)
Q Consensus 236 l~m~GfSiTll~ld~-~~~~--------~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (419)
|||+||||||+++|+ +|++ |||+||++|+||.... + .. ..+. .... .....++..+.....
T Consensus 308 ldm~G~SlTll~l~d~~~~~~~~~p~~~lldapt~apaw~~~~~---~-~~-~~~~---~~~~--~~~~~~~~~~~~~~~ 377 (584)
T PTZ00375 308 LEMHGFSLTLLPIEDEDDLQLLDTNQKPLLNFHTPQSSWATAKG---P-LS-ALQL---AKPE--AEAASRKAATPTNSL 377 (584)
T ss_pred cCCCccEEEEEecCcHHHHHHhccccHhhhCCCCCCCCCCCCCC---C-cc-cccc---cccc--ccccCccccchhHHH
Confidence 999999999999965 5999 8888899999976321 1 00 0000 0000 000011111012477
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhccCCC-CCHHHHHHHHHHHHHhhcCCChHHHHH
Q 014766 307 LEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPL-NDAAETVNEIGASIRRVMGGTSGILYH 385 (419)
Q Consensus 307 l~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~Ga~ai~~~l~~~~~~-~~~~~~l~~i~~a~~~~mGGtSG~Lyg 385 (419)
++++|+++|+.|+++|++||+||+++||||||+||.+||+++.+.++ ..+. .++.++|+.+++++++.||||||||||
T Consensus 378 l~~~l~~~~~~l~~~e~~Lt~LD~~iGDGDhG~tm~rG~~ai~~~l~-~~~~~~~~~~~l~~ig~a~~~~vGGSSG~Lyg 456 (584)
T PTZ00375 378 LRSVLERVFETLIESENYLNELDAEVGDGDLGSGLERSSKAVLESLP-YLPLEANVRKTLTLISKAVADAFGGSSGPLYG 456 (584)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhccccCCcHHHHHHHHHHHHHHHhh-hccccCCHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 99999999999999999999999999999999999999999999998 3553 589999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHhh
Q 014766 386 IFCKAAYAKLKASSKSGITSKQCEMIFFIKIVS 418 (419)
Q Consensus 386 ~ff~a~a~~l~~~~~~~~~~~~~a~al~~ales 418 (419)
+||+++++.+++..+...+.++|+++|.++++.
T Consensus 457 ~~f~~aa~~l~~~~~g~~~~~~~a~al~a~~ea 489 (584)
T PTZ00375 457 AFLLGGANALAEALNGGNAVDAVRAALAAGSHS 489 (584)
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHH
Confidence 999999999974210123578999999999875
No 5
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=1.5e-103 Score=781.65 Aligned_cols=262 Identities=47% Similarity=0.753 Sum_probs=256.9
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 014766 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (419)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (419)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 68 mLdaav~G~VFaSPs~~~Il~ai~av~~~~GvL~iv~NYtGD~lnF~lA~E~a~~eGi~v~~V~v~DDva~~~~~~~~~R 147 (331)
T PRK14481 68 MLDAAVCGAVFTSPTPDQILEAIKAVDTGAGVLLIVKNYSGDVMNFEMAAELAEMEGIEVASVVVDDDVAVEDSLYTQGR 147 (331)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHhCCCCEEEEEeCCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877778899
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 014766 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (419)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (419)
||+|||||||||+||||++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAG~vlv~KiaGAaA~~G~sL~ev~~~a~~~~~~~~Tigval~~ct~Pg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 227 (331)
T PRK14481 148 RGVAGTVFVHKIAGAAAEAGASLDEVKALAEKVNPNIRSMGVALSPCTVPAVGKPGFDLGDDEIEIGIGIHGEPGRRREK 227 (331)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCCccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 6799999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 014766 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (419)
Q Consensus 160 ~~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Tsl~m~ 239 (419)
++++++++++|+++|+++ ++++++|+++||||||||||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 228 ~~~a~~l~~~m~~~ll~~----~~~~~gd~v~lLvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~i~r~~vG~~~TSldm~ 302 (331)
T PRK14481 228 LKPADEIAEELLEKILED----LKLVAGDEVLVLVNGMGATPLMELYIVYNDVAELLEER-GVTVARSLVGNYMTSLDMA 302 (331)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999986 68999999999999999999999999999999999877 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCCCC
Q 014766 240 GFSISIMKADEVILKHLDATTKAPHWPV 267 (419)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w~~ 267 (419)
||||||+++|++|++|||+||++|+||+
T Consensus 303 G~SiTLl~ld~el~~~ldap~~~~~w~~ 330 (331)
T PRK14481 303 GFSITLLKLDDELLELLDAPVDTPALRW 330 (331)
T ss_pred ceEEEEeecCHHHHHHhCCCCcCCCCCC
Confidence 9999999999999999999999999986
No 6
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=100.00 E-value=2.2e-103 Score=779.99 Aligned_cols=260 Identities=43% Similarity=0.704 Sum_probs=255.3
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 014766 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (419)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (419)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 69 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~iv~NYtGD~lnF~mA~E~a~~eGi~v~~V~V~DDva~~~~~~~~~R 148 (329)
T TIGR02363 69 MLDAAVPGEVFTSPTPDQILEAIKAVDQGAGVLLIVKNYTGDVMNFEMAAELAEDEGIKVATVVVDDDIAVEDSLYTAGR 148 (329)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHHcCCcEEEEEECCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877668899
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 014766 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (419)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (419)
||+|||||||||+||+||+|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 149 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGval~~ctvPg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 228 (329)
T TIGR02363 149 RGVAGTVFVHKIAGAAAEKGASLDELKSLGEKVNPNTKSIGVALTACTVPAVGKPGFDLADDEMEIGVGIHGEPGIRREK 228 (329)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 6899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 014766 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (419)
Q Consensus 160 ~~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Tsl~m~ 239 (419)
+.++++++++|+++|+++ ++++++|+|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 229 ~~~a~~l~~~l~~~l~~~----~~~~~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 303 (329)
T TIGR02363 229 MKSSDEIADELLDKLLDD----LGLQSGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQR-GVNVARTLVGNYMTSLDMA 303 (329)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999986 68899999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCC
Q 014766 240 GFSISIMKADEVILKHLDATTKAPHW 265 (419)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w 265 (419)
||||||+++|+++++|||+||++|+|
T Consensus 304 G~SiTLl~ld~el~~~ldap~~~~~w 329 (329)
T TIGR02363 304 GFSLTLLKLDDELLELWDAPVTTIAL 329 (329)
T ss_pred ceEEEEeeCCHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999
No 7
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=100.00 E-value=4.8e-103 Score=776.72 Aligned_cols=260 Identities=35% Similarity=0.551 Sum_probs=252.7
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 014766 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (419)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (419)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||++++....||
T Consensus 65 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~ivkNYtGD~lNF~mA~E~a~~eGi~v~~V~V~DDvA~~~~~~~~~R 144 (326)
T TIGR02362 65 MLSAAIMGDVFVPPTAQDILEAIRQVDRGKGVFVIIKNFEADLSEFSQAIQQARQEGRQIKYIIVHDDISVEHESFKQRR 144 (326)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEeccCHHHHhhHHHHHHHHHHcCCcEEEEEECCcccCCCCcccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999554445599
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 014766 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (419)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (419)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 145 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~~f~l~~~emE~G~GIHGEpG~~r~~ 224 (326)
T TIGR02362 145 RGVAGTILVHKILGAAAAEGASLDELEHIAAALVTNIATIGVAAKSARIPGQSTPSFDLEEGEIYYGIGIHGEPGYRTEP 224 (326)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeccccccCCCCCCCCCccCCCcEEeccccCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 014766 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (419)
Q Consensus 160 ~~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Tsl~m~ 239 (419)
++++++++++|+++|+++ +++++||+|+|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 225 ~~~a~elv~~l~~~ll~~----~~~~~gd~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 299 (326)
T TIGR02362 225 FVSSEHLAVELVNKLKLK----FRWQADDHYAVLVNNLGGTTPMEQMVFNNDVHELLALE-ALHLPFIKVGTFLTSLDMH 299 (326)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCCC
Confidence 999999999999999986 58899999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEeec-cHHHHHhhcCcCCCCCC
Q 014766 240 GFSISIMKA-DEVILKHLDATTKAPHW 265 (419)
Q Consensus 240 GfSiTll~l-d~~~~~~ldap~~a~~w 265 (419)
|||||||++ |+||++|||+||++|+|
T Consensus 300 G~SiTll~l~d~el~~~ldap~~~~~~ 326 (326)
T TIGR02362 300 GLSLTLLRLKDPQWLDYLNAPVDAAAW 326 (326)
T ss_pred ccEEEEEeCCcHHHHHHhCCCCCCCCC
Confidence 999999999 56999999999999999
No 8
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=100.00 E-value=3.8e-104 Score=785.83 Aligned_cols=267 Identities=53% Similarity=0.860 Sum_probs=226.3
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCC-CC
Q 014766 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGI-AG 79 (419)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~-~g 79 (419)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||++++++. +|
T Consensus 52 mLdAav~G~VFaSPs~~qI~~ai~~~~~~~Gvl~iv~NYtGD~lNF~~A~E~a~~~Gi~v~~v~v~DDva~~~~~~~~~g 131 (325)
T PF02733_consen 52 MLDAAVCGDVFASPSADQILAAIKAVDSGKGVLLIVKNYTGDVLNFGMAAEKARAEGIKVEMVIVGDDVASAPSKNSLVG 131 (325)
T ss_dssp SBSEEEEEEETS---HHHHHHHHHHH-SSS-EEEEEESSHHHHHHHHHHHHHHHHTT--EEEEEE--B-SSSSSTTS-SS
T ss_pred ccceEeeCCCcCCCCHHHHHHHHHhccCCCCEEEEEecchHHHhhHHHHHHHHHhCCCCEEEEEecCccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875 99
Q ss_pred ccccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCC-CCCCCCcCCCeeEEeccccCCCCcccc
Q 014766 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (419)
Q Consensus 80 RRGlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~ 158 (419)
|||+||+||||||+||+||+|+||+||++++++++++++||||+|+|||+|| +++.|+|++||||||||||||||++|.
T Consensus 132 RRGlAG~v~v~KiaGAaAe~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~f~L~~~emE~GmGIHGEpG~~r~ 211 (325)
T PF02733_consen 132 RRGLAGTVLVHKIAGAAAERGASLDEVKELAEKANDNLRTIGVALSPCTVPGRGKPSFELPEDEMEIGMGIHGEPGVERI 211 (325)
T ss_dssp S---TTHHHHHHHHHHHHHTT--HHHHHHHHHHHHTTEEEEEEEEE--EETTTCSSSS-B-TTEEEETE-TTS---SEEE
T ss_pred cccccchhHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhceeeeeccCcCCCCCCCCcccCCCCCEEeccccCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHhcc---cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhh-hhhcCCeEEEeeeeccc
Q 014766 159 DLQP-VDVVVSHVLKQILSTE---TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNL-QLEHGLAVERVYTGSFM 233 (419)
Q Consensus 159 ~~~~-a~~l~~~~l~~l~~~~---r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L-~~~~gi~v~r~~~G~~~ 233 (419)
++.+ +++++++|+++|+++. |+|++++++|+|+||||||||||.||||++++++.++| +++ ||+|+|+|+|+||
T Consensus 212 ~~~~~a~elv~~ml~~ll~~~~~~r~~~~~~~gd~v~llVNnLG~ts~lEl~ii~~~v~~~L~~~~-gi~v~r~~vG~~~ 290 (325)
T PF02733_consen 212 KLKPSADELVDEMLDKLLDDLDPDRAFLPLKEGDEVALLVNNLGGTSQLELYIIAREVLEQLEEEK-GIKVVRVYVGNFM 290 (325)
T ss_dssp E--B-HHHHHHHHHHHHHHCCHCCEEEHTG-TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHH-HHT-TEEEEEEEEE-SS
T ss_pred CCCCcHHHHHHHHHHHHhccCcccccccccCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHhc-CceEEEeEEEccc
Confidence 9999 9999999999999874 77899999999999999999999999999999999999 666 9999999999999
Q ss_pred cccCCCcceEEEeeccHHHHHhhcCcCCCCCCCCC
Q 014766 234 TSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (419)
Q Consensus 234 Tsl~m~GfSiTll~ld~~~~~~ldap~~a~~w~~~ 268 (419)
|||||+|||||||++|+++++|||+||++|+|+|+
T Consensus 291 TSLdm~GfSiTLl~ld~e~~~~~~ap~~~pa~~~g 325 (325)
T PF02733_consen 291 TSLDMAGFSITLLKLDDELKELLDAPTDTPAWRWG 325 (325)
T ss_dssp --TTBEEEEEEEEEETSHHHHHHHS-EESSS-EE-
T ss_pred CCCCCceeEEEeeecCHHHHHHhcCcccCccCCCC
Confidence 99999999999999999999999999999999873
No 9
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=100.00 E-value=6.8e-103 Score=775.64 Aligned_cols=260 Identities=37% Similarity=0.588 Sum_probs=253.8
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCC-CCCCCC
Q 014766 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPP-PRGIAG 79 (419)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~-~~~~~g 79 (419)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||+++ +.+..|
T Consensus 67 mLdAav~G~VFaSPs~~qI~~ai~av~~~~GvL~ivkNYtGDvlnF~mA~E~a~~eGi~v~~VvV~DDva~~~~~~~~~~ 146 (329)
T PRK14483 67 MLTAAVNGSIFTPPTAEQILAATRLVPKGKGVFFIIKNFEADVAEFSAAIQIARQEGRQIKYIIVHDDISVEDDASFNKR 146 (329)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCcccCCCccccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987 555569
Q ss_pred ccccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCC-CCCCCCcCCCeeEEeccccCCCCcccc
Q 014766 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (419)
Q Consensus 80 RRGlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~ 158 (419)
|||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|.|+|++||||||||||||||++|.
T Consensus 147 RRGlAGtvlv~KiaGAaA~~G~~L~ev~~~a~~~~~~~~Tigval~~c~vPg~~~~~f~l~~~emE~GmGIHGEpG~~r~ 226 (329)
T PRK14483 147 RRGVAGTVLLHKILGAAALEGASLDELEQLGLSLTENIATLGVALSPANLPVAGLPSFDLNEDEISYGIGIHGEPGYRKE 226 (329)
T ss_pred CCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCC
Q 014766 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (419)
Q Consensus 159 ~~~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Tsl~m 238 (419)
+++|+++++++|+++|+++ +++++||+|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+|||||||
T Consensus 227 ~~~~a~~l~~~l~~~ll~~----~~~~~gd~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm 301 (329)
T PRK14483 227 PFSSSEILAIELVNKLKSK----YRWQKGDNFILLINGLGATTLMEQYIFANDIRRLLELE-GLQITFVKVGTLLTSLDM 301 (329)
T ss_pred CCCCHHHHHHHHHHHHHhh----cCcCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCC
Confidence 9999999999999999986 68899999999999999999999999999999999887 999999999999999999
Q ss_pred CcceEEEeec-cHHHHHhhcCcCCCCCC
Q 014766 239 AGFSISIMKA-DEVILKHLDATTKAPHW 265 (419)
Q Consensus 239 ~GfSiTll~l-d~~~~~~ldap~~a~~w 265 (419)
+||||||+++ |++|++|||+||++|+|
T Consensus 302 ~G~SiTLl~l~d~el~~~ldap~~~~~w 329 (329)
T PRK14483 302 KGISLTLLKVKDPDWLDWLKAPTRAAAW 329 (329)
T ss_pred CccEEEEEeCCcHHHHHHhcCCCCCCCC
Confidence 9999999999 56999999999999999
No 10
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=8.2e-103 Score=779.30 Aligned_cols=266 Identities=39% Similarity=0.632 Sum_probs=258.0
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 014766 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (419)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (419)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||++++...+||
T Consensus 68 mLdAAv~G~VFaSPs~~qI~~ai~av~~~~GvLlivkNYtGDvlNF~mAaE~a~~eGi~v~~V~V~DDva~~~~~~~~gR 147 (356)
T PRK11468 68 MLDGACPGEIFTSPTPDQMFECAMQVDGGEGVLLIIKNYTGDVLNFETATELLHDSGVKVTTVLIDDDVAVKDSLYTAGR 147 (356)
T ss_pred cccceeeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHhhccHHHHHHHHHhCCCcEEEEEeCCcccCCCCcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877778999
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCC-CCCCCCcCCCeeEEeccccCCCCccccc
Q 014766 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (419)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (419)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAGtvlv~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGvaL~~ctvP~~~~~~f~L~~~emE~GmGIHGEpG~~r~~ 227 (356)
T PRK11468 148 RGVANTVLIEKLVGAAAERGYSLDQCAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRP 227 (356)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcc---------------------cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhh
Q 014766 160 LQPVDVVVSHVLKQILSTE---------------------TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQL 218 (419)
Q Consensus 160 ~~~a~~l~~~~l~~l~~~~---------------------r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~ 218 (419)
+.|+++++++|+++|+++. |. +++++||+|+|||||||+||++|||++++++.++|++
T Consensus 228 ~~~a~elv~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gd~v~vLVNgLG~t~~~El~i~~~~v~~~L~~ 306 (356)
T PRK11468 228 FSSLDQTVDEMFDTLLENGSYHRTLRFWDRQQGSWQEEEQTK-QPLQSGDRVIALVNNLGATPLSELYGVYNRLATRCEQ 306 (356)
T ss_pred CCCHHHHHHHHHHHHHcCcccccchhcccccccccccccccc-CCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999862 23 4888999999999999999999999999999999988
Q ss_pred hcCCeEEEeeeeccccccCCCcceEEEeeccHHHHHhhcCcCCCCCCCCC
Q 014766 219 EHGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (419)
Q Consensus 219 ~~gi~v~r~~~G~~~Tsl~m~GfSiTll~ld~~~~~~ldap~~a~~w~~~ 268 (419)
+ ||+|+|+|+|+|||||||+|||||||++|+++++|||+||++|+|+++
T Consensus 307 ~-gi~v~r~~vG~~~TSldm~G~SiTLl~lddel~~lldap~~~~~w~~~ 355 (356)
T PRK11468 307 A-GLTIERNLIGAYCTSLDMQGFSITLLKVDDETLALWDAPVHTPALRWG 355 (356)
T ss_pred C-CCEEEEeeeecccccCCCCceEEEEeecCHHHHHHhCCCCCCcccccC
Confidence 8 999999999999999999999999999999999999999999999753
No 11
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-77 Score=590.55 Aligned_cols=256 Identities=46% Similarity=0.729 Sum_probs=248.3
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCC
Q 014766 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAG 79 (419)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~-~~g 79 (419)
||+|+++|++|+||+++||+++|+++..++|++++++||+||+|||+||+|+++++|++|+.++|.|||++.++.+ .++
T Consensus 67 ml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~gd~mnf~~A~e~a~~~gi~v~~v~v~ddva~~~~rg~~~~ 146 (323)
T COG2376 67 MLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYGGDFMNFGMAAEGADAEGIKVLTVVVNDDVAVIQSRGKAEG 146 (323)
T ss_pred HHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchHHHHHHHHHHHhhhhhcCCceEEEEeecccccccccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988754 799
Q ss_pred ccccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCCCCCCCCcCCCeeEEeccccCCCCccccc
Q 014766 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (419)
Q Consensus 80 RRGlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (419)
|||++|++|||||+||+|++|+||+++.+++++++.+++|+|++|++|++|+... |++++||||+|+|||||||++|++
T Consensus 147 rrgtagdvlv~ki~gaaa~~g~~l~~~~~~a~~a~~~~~s~Gv~lt~~~vp~~Gr-f~~~~gE~elG~gihGe~g~~~~~ 225 (323)
T COG2376 147 RRGTAGDVLVPKIAGAAAERGLSLDEVKAVALKAIDNAASIGVALTPCTVPTKGR-ASLGLGERSLGHGIHGEPGVRREI 225 (323)
T ss_pred CCceeeeehHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHhcCcccccccCc-cccCCCCEeeccccCCCCcchHHh
Confidence 9999999999999999999999999999999999999999999999999999434 999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 014766 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (419)
Q Consensus 160 ~~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Tsl~m~ 239 (419)
++++++++++|+++|+++ ++++ |+|+|||||||+||++|||++++.|.++|+++ ||+|+|.++|+|||||||+
T Consensus 226 l~s~~e~~~el~~~l~~~-----~~~~-~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~-~i~i~~~~~G~~~Tsl~m~ 298 (323)
T COG2376 226 LKSADELAKELVDKLLAE-----KLEQ-DEVAVLVNGLGATPLMELYILYNRVARLLAAK-GITIERTLVGNYMTSLDMA 298 (323)
T ss_pred HHhHHHHHHHHHHHHhcc-----cCCC-CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeecceecccccC
Confidence 999999999999999985 5677 99999999999999999999999999999999 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCC
Q 014766 240 GFSISIMKADEVILKHLDATTKAPHW 265 (419)
Q Consensus 240 GfSiTll~ld~~~~~~ldap~~a~~w 265 (419)
||||||+++|++|++|||+||++ .|
T Consensus 299 G~sitl~~~d~~~~~~~~~p~~~-~~ 323 (323)
T COG2376 299 GFSITLLKLDDELLDLLDAPVDT-RW 323 (323)
T ss_pred CceEEEEeCCHHHHHHhcCcCCC-CC
Confidence 99999999999999999999999 55
No 12
>PRK10005 dihydroxyacetone kinase subunit DhaL; Provisional
Probab=99.93 E-value=1.6e-25 Score=212.27 Aligned_cols=113 Identities=21% Similarity=0.267 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhhcCCChHH
Q 014766 303 QGHVLEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGI 382 (419)
Q Consensus 303 ~~~~l~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~Ga~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~mGGtSG~ 382 (419)
+...+++||+++++.|++++++||+||+.+||||||+||.+||+++++.++ ..+..++.++|+.+++++++.|||||||
T Consensus 4 ~~~~~~~~l~~~~~~l~~~~~~Lt~lD~~iGDGD~G~~m~~G~~av~~~l~-~~~~~d~~~~l~~~g~~~~~~~GGtsG~ 82 (210)
T PRK10005 4 SRTQIVNWLTRCGDIFTEESDYLTGLDREIGDADHGLNMNRGFSKVVEKLP-AIADKDIGFILKNTGMTLLSSVGGASGP 82 (210)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHhccccCccHHHHHHHHHHHHHHHhh-ccccCCHHHHHHHHHHHHHHHcCCccHH
Confidence 456789999999999999999999999999999999999999999999998 4666789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHhh
Q 014766 383 LYHIFCKAAYAKLKASSKSGITSKQCEMIFFIKIVS 418 (419)
Q Consensus 383 Lyg~ff~a~a~~l~~~~~~~~~~~~~a~al~~ales 418 (419)
||++||+++++.++++ ++++.++|+++|..++++
T Consensus 83 Lyg~~f~~~~~~l~~~--~~~~~~~~~~al~~~~~~ 116 (210)
T PRK10005 83 LYGTFFIRAAQATQAR--QSLTLEELYQMFRDGADG 116 (210)
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHH
Confidence 9999999999999875 679999999999999875
No 13
>TIGR02365 dha_L_ycgS dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.
Probab=99.91 E-value=2.4e-24 Score=201.94 Aligned_cols=108 Identities=22% Similarity=0.332 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 014766 308 EVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIF 387 (419)
Q Consensus 308 ~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~Ga~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~mGGtSG~Lyg~f 387 (419)
++||+++++.|++++++||+||+++||||||+||.+|++++.+.++ ..+..++.++|+.++++++..+|||||||||+|
T Consensus 2 ~~~~~~~~~~l~~~~~~L~~LD~~vGDGD~G~nm~~g~~ai~~~l~-~~~~~~~~~~l~~~~~~~~~~~gGtSG~l~~~~ 80 (194)
T TIGR02365 2 LNWLKNCGDLIIENKEYLTELDRAIGDGDHGINMARGFSEVKEKLD-AFKDKTIGEILKNTGMTLISKVGGASGPLYGTA 80 (194)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 6799999999999999999999999999999999999999999998 355678999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHhh
Q 014766 388 CKAAYAKLKASSKSGITSKQCEMIFFIKIVS 418 (419)
Q Consensus 388 f~a~a~~l~~~~~~~~~~~~~a~al~~ales 418 (419)
|+++++.++++ ++++.++|+++|.++++.
T Consensus 81 f~~~~~~l~~~--~~~~~~~~~~al~~a~~~ 109 (194)
T TIGR02365 81 FLKASKALKDD--EILDAEDLAEILQAGLEG 109 (194)
T ss_pred HHHHHHHhccC--CCCCHHHHHHHHHHHHHH
Confidence 99999999875 689999999999999875
No 14
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=99.81 E-value=1.6e-19 Score=191.88 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccC-CCCCCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhhcCCChHHHHH
Q 014766 307 LEVTIEAAAEAVVNLRDRLNEWDS-KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYH 385 (419)
Q Consensus 307 l~~~l~~~~~~li~~e~~Ln~LD~-~vGDGD~G~tm~~Ga~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~mGGtSG~Lyg 385 (419)
|++|+..+++.|++++++||+||. ++||||||+||.+|++++.+.++ ..+..++.++++.+++.++..+|||||+|||
T Consensus 1 ~~~~l~~~a~~l~~~~~~Ln~LdvfpVgDGDtGtNM~~t~~a~~~~l~-~~~~~~~~~~~~~~a~~~l~garGnSGvIls 79 (530)
T TIGR03599 1 LADMIRSGANNLENNAEEINALNVFPVPDGDTGTNMLLTMTSAVKEIE-KLEEGSVGEVAKALAKGLLMGARGNSGVILS 79 (530)
T ss_pred CHHHHHHHHHHHHHhHHHHHHhcCCccCCcChHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 478999999999999999999999 89999999999999999999998 3566789999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHhh
Q 014766 386 IFCKAAYAKLKASSKSGITSKQCEMIFFIKIVS 418 (419)
Q Consensus 386 ~ff~a~a~~l~~~~~~~~~~~~~a~al~~ales 418 (419)
+||+++++.++++ ++++.++|+++|+.|+++
T Consensus 80 q~f~g~a~~l~~~--~~~~~~~l~~al~~a~~~ 110 (530)
T TIGR03599 80 QIFRGFAKALEDK--EELDAEDLAAAFQEAVET 110 (530)
T ss_pred HHHHHHHHHhccC--CCCCHHHHHHHHHHHHHH
Confidence 9999999999875 689999999999999875
No 15
>PF02734 Dak2: DAK2 domain; InterPro: IPR004007 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the predicted phosphatase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 3CR3_B 1UN8_A 1UN9_B 3PNL_B 2BTD_A.
Probab=99.75 E-value=5.9e-18 Score=156.33 Aligned_cols=85 Identities=32% Similarity=0.468 Sum_probs=77.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhccCCCCCCHHHHH
Q 014766 331 KVGDGDCGSTMYRGATAILEDKKKYY-PLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQCE 409 (419)
Q Consensus 331 ~vGDGD~G~tm~~Ga~ai~~~l~~~~-~~~~~~~~l~~i~~a~~~~mGGtSG~Lyg~ff~a~a~~l~~~~~~~~~~~~~a 409 (419)
++||||||+||++|++++++.+++ . +..++.++|..+++++++.+||||||||++||+++++.++++ ++++.++|.
T Consensus 1 ~vGDGD~G~nm~~~~~ai~~~l~~-~~~~~~~~~~l~~~~~~~~~~~gGssG~L~~~~f~~~a~~l~~~--~~~~~~~~~ 77 (175)
T PF02734_consen 1 PVGDGDHGTNMARGARAIKEALDD-LPPEDDPGKLLKAIAMALLSGAGGSSGPLYSQFFMGAAKALKGK--EELDAEDLA 77 (175)
T ss_dssp CTSSS-HHHHHHHHHHHHHHHHHC-CSCTSSHHHHHHHHHHHHHHHT-CTHHHHHHHHHHHHHHHCHTT--SECCHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHh-cCCcCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhccC--CCCCHHHHH
Confidence 589999999999999999999984 5 678899999999999999999999999999999999999876 789999999
Q ss_pred HHHHHHHhh
Q 014766 410 MIFFIKIVS 418 (419)
Q Consensus 410 ~al~~ales 418 (419)
++|+++++.
T Consensus 78 ~a~~~~~~~ 86 (175)
T PF02734_consen 78 EAFEAALEA 86 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 16
>COG1461 Predicted kinase related to dihydroxyacetone kinase [General function prediction only]
Probab=99.57 E-value=1.7e-14 Score=151.43 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=107.0
Q ss_pred cchHHHHHHHHHHHHHHHHhHHhhhhccC-CCCCCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhhcCCCh
Q 014766 302 QQGHVLEVTIEAAAEAVVNLRDRLNEWDS-KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTS 380 (419)
Q Consensus 302 ~~~~~l~~~l~~~~~~li~~e~~Ln~LD~-~vGDGD~G~tm~~Ga~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~mGGtS 380 (419)
.+...|.+|+.++|+.|.++.+++|.|+. +|+|||+|+||.-.++.+.+.+.+ .+..++.++.+.++..++...+|+|
T Consensus 5 i~~~~~~~m~~~ga~~l~~~~~~vN~LNVFPVPDGDTGTNM~~Tm~~~~~~~~~-~~~~~~~~l~~~~s~g~LmGARGNS 83 (542)
T COG1461 5 IDGSLFAEMIIAGANNLSKNADEVNALNVFPVPDGDTGTNMSMTMTSAIKELEN-LKSSSIGELAKILSKGLLMGARGNS 83 (542)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCCcccHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHhhhccCcc
Confidence 45788999999999999999999999999 999999999999999999999984 5558899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHhh
Q 014766 381 GILYHIFCKAAYAKLKASSKSGITSKQCEMIFFIKIVS 418 (419)
Q Consensus 381 G~Lyg~ff~a~a~~l~~~~~~~~~~~~~a~al~~ales 418 (419)
|+|+|+.|+++++....+ .+++.+++++||..|.+.
T Consensus 84 GVIlSQilrGf~~~~~~~--~ei~~~~la~Af~~ave~ 119 (542)
T COG1461 84 GVILSQILRGFAAAIADK--EEIDIEDLAKAFQRAVEV 119 (542)
T ss_pred hhhHHHHHHHHHHhcccc--cccCHHHHHHHHHHHHHH
Confidence 999999999999999876 799999999999999875
No 17
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=8.3e-09 Score=103.57 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHH----HHhHHhhhh--ccCCCCCCchhHHHH--HHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhhcC
Q 014766 307 LEVTIEAAAEAV----VNLRDRLNE--WDSKVGDGDCGSTMY--RGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMG 377 (419)
Q Consensus 307 l~~~l~~~~~~l----i~~e~~Ln~--LD~~vGDGD~G~tm~--~Ga~ai~~~l~~-~~~~~~~~~~l~~i~~a~~~~mG 377 (419)
+.+++....+.+ +.+++++++ +|..+||||||.||+ +|+..+.+++.. .+.+.++.++|+.++++.+...|
T Consensus 19 ~~~~~~~~~~~i~~~~~~~r~~l~~kV~dvsgGgsgHep~~ag~vG~gml~aa~~g~if~sP~~~~il~ai~~a~~g~gg 98 (323)
T COG2376 19 LAKALPDLLDLIEENGIANREYLSEKVLDVSGGGSGHEPNMAGYVGFGMLDAALVGEIFTSPSPDQILKAIGAALLGKGG 98 (323)
T ss_pred HHHHHHHHHHhcccchhhhcccCcccceeeeecCCccchhhhccccHHHHHHHhcccccCCCCHHHHHHHHHHHhcCCee
Confidence 444444444444 489999999 999999999999999 999999999874 23455699999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhc
Q 014766 378 GTSGILYHIFCKAAYAKLKA 397 (419)
Q Consensus 378 GtSG~Lyg~ff~a~a~~l~~ 397 (419)
|+||++|+..|+.++.+.+.
T Consensus 99 l~ig~nY~gd~mnf~~A~e~ 118 (323)
T COG2376 99 LASGPNYGGDFMNFGMAAEG 118 (323)
T ss_pred EEEecchHHHHHHHHHHHhh
Confidence 99999999999999999864
No 18
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=91.79 E-value=15 Score=40.03 Aligned_cols=179 Identities=23% Similarity=0.260 Sum_probs=116.8
Q ss_pred eeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhc-CCcEEEEEecccccCCCCCCCCCccc
Q 014766 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE-GYKVEIVIVGDDCALPPPRGIAGRRG 82 (419)
Q Consensus 4 aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~-G~~v~~v~v~DDva~~~~~~~~gRRG 82 (419)
..++|.==.-||+.+|++||+.++... |+++-.|. |.=||+|+|... +.+|.+| |.+ .=-.|
T Consensus 337 ~vi~ggqt~nPS~~dll~ai~~~~a~~-V~iLPNn~-----nii~aA~qa~~~~~~~v~vv---------pT~--s~~qg 399 (530)
T TIGR03599 337 VVIEGGQTMNPSTEDILKAIEKVNAKN-VFVLPNNK-----NIILAAEQAAELADKNVVVI---------PTK--TIVQG 399 (530)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEecCCc-----cHHHHHHHHHHHhCCcEEEE---------eCC--CHHHH
Confidence 345555434799999999999987655 77777663 888999999764 5555543 222 11233
Q ss_pred cchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecC--ccccCCCCCCCCcCCCeeEEeccccCCCCcccccC
Q 014766 83 LAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS--VCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (419)
Q Consensus 83 laG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~--~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~ 160 (419)
++.. +.=+...++++-.+.-..+..+++|.-|... .-++.| ..+.+|++ |||-+..=+.. =
T Consensus 400 iaAl--------~~fdp~~~~~~n~~~M~ea~~~v~~g~vt~A~rd~~~~~----~~i~~gd~---igi~~~~i~~~--~ 462 (530)
T TIGR03599 400 LAAL--------LVFDPEASLEDNKEAMEEAIKAVRSGEVTYAVRDTKING----LEIKKGDF---LGIVDGKIIAV--G 462 (530)
T ss_pred HHHH--------HhhCCCCCHHHHHHHHHHHHhcCeEEEEEEEeccceecC----eeecCCCE---eEecCCeEEEe--c
Confidence 3321 1225788999999999999999988777433 222222 23444544 55543222222 2
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEEEeeee
Q 014766 161 QPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVERVYTG 230 (419)
Q Consensus 161 ~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~-gi~v~r~~~G 230 (419)
++..+.+..+++++++ ++.+++-++-|=+.+.. .++.+.++++++| ++.+.-.+-|
T Consensus 463 ~d~~~~~~~ll~~l~~---------~~~elvTi~~G~~~~~~-----~~~~l~~~i~~~~~~veve~~~Gg 519 (530)
T TIGR03599 463 KDPEDAAKKLLDKLLD---------EDSELITIFYGEDATEE-----EAEELEAFIEEKYPDVEVEIYEGG 519 (530)
T ss_pred CCHHHHHHHHHHHHhc---------CCCeEEEEEECCCCCHH-----HHHHHHHHHHhhCCCcEEEEEECC
Confidence 3678888999999865 46788888888776654 4577777888887 7888855544
No 19
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=81.18 E-value=11 Score=40.61 Aligned_cols=175 Identities=19% Similarity=0.195 Sum_probs=98.1
Q ss_pred CHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhc-CCcEEEEEecccccCCCCCCCCCccccchhhhHHHHH
Q 014766 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE-GYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (419)
Q Consensus 15 s~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~-G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~v~Kia 93 (419)
++..|.+||+.+.++.|||+++ ----=+||-+||.|+...+ -.+|++ + | .| .+ =|++ .|
T Consensus 48 ~~~~i~~ai~~~~~~~gv~v~~-DlGSa~~~~e~a~e~~~~~~~~~v~~--~-~---ap----lV-----Eg~~----~a 107 (473)
T PRK11377 48 DAVKVMEAIESVADADHVLVMM-DMGSALLSAETALELLDPEIAAKVRL--C-A---AP----LV-----EGTL----AA 107 (473)
T ss_pred CHHHHHHHHHhccCCCCEEEEE-ecchHHhHHHHHHHhhcccccceEEE--e-c---Cc----hH-----hHHH----HH
Confidence 5789999999999999999888 3444489999999998533 123443 2 2 12 11 1222 23
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhccc-ceeeecCccccCC-CCCCCCcCCCeeEEeccccCCCCcccccCCCHHHHHHHHH
Q 014766 94 GAAAAAGLSLADVAAEAKRASEMVG-TMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVL 171 (419)
Q Consensus 94 GA~A~~G~~L~~v~~~a~~~~~~~~-tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~l~~~~l 171 (419)
-.+|..|.+|++|.+.++.+...-. ..|... ..|. ..+.-..+.+..+.=+-|.++-|..-. ++..+++..-
T Consensus 108 av~a~~g~~l~~v~~~~~~a~~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~n~~GLHAR---PAa~lv~~a~ 181 (473)
T PRK11377 108 TVSAASGADIDKVIFDAMHALEAKREQLGLPS---SDTEISDTCPAYDEEARSLSVVIKNRNGLHVR---PASRLVYTLS 181 (473)
T ss_pred HHHhccCCCHHHHHHHHHHHhHHHHHhcCCCC---CCcccCCCCCcccccceEEEEEEcCCCCCcHh---HHHHHHHHHh
Confidence 3467889999999999998765433 333322 1111 111112244666666666777775432 2334433332
Q ss_pred HHH----Hh-cc-----cC-----CCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcC
Q 014766 172 KQI----LS-TE-----TN-----YVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHG 221 (419)
Q Consensus 172 ~~l----~~-~~-----r~-----~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~g 221 (419)
++= +. .. ++ -+..+.|+++.+.++|= . |.- ....+.+++++.||
T Consensus 182 ~f~s~I~i~~~g~~vdakSi~~lm~Lg~~~Gd~v~i~a~G~----D-e~~-Al~~l~~l~~~~fg 240 (473)
T PRK11377 182 TFNADMLLEKNGKCVTPESLNQIALLQVRYNDTLRLIAKGP----E-AEE-ALIAFRQLAEDNFG 240 (473)
T ss_pred hCCCeEEEEECCeEEchHhHHHHHhcCCCCCCEEEEEEeCc----C-HHH-HHHHHHHHHHhccC
Confidence 220 00 00 01 14456788888888883 2 222 22555555655544
No 20
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=77.84 E-value=12 Score=32.98 Aligned_cols=79 Identities=25% Similarity=0.313 Sum_probs=54.0
Q ss_pred CHHHHHHHHHhccC-CCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHH
Q 014766 15 PVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (419)
Q Consensus 15 s~~~i~~ai~~v~~-~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~v~Kia 93 (419)
++++|.++|+.+.+ +.|||+++== -|=++|..+|.++.+.+.. +.|.. .---++.-=++
T Consensus 44 ~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~--~~v~g-----------------~nlPlvega~~ 103 (125)
T TIGR02364 44 SPDKIIEAIEKADNEADGVLIFYDL-GSAVMNAEMAVELLEDEDR--DKVHL-----------------VDAPLVEGAFA 103 (125)
T ss_pred hHHHHHHHHHHhcCCCCCEEEEEcC-CCcHhHHHHHHHHhccccc--cEEEE-----------------echhHHHHHHH
Confidence 57899999999966 8999988744 8889999999999865432 22221 11113333333
Q ss_pred HH-HHHcCCCHHHHHHHHHHH
Q 014766 94 GA-AAAAGLSLADVAAEAKRA 113 (419)
Q Consensus 94 GA-~A~~G~~L~~v~~~a~~~ 113 (419)
.| .+..|.+|++|.+.++..
T Consensus 104 aa~~~~~g~~l~~v~~~~~~~ 124 (125)
T TIGR02364 104 AAVEAQVGASIEQVLAEALQA 124 (125)
T ss_pred HHHHHcCCCCHHHHHHHHHhc
Confidence 33 345799999999888753
No 21
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=73.15 E-value=4.5 Score=41.65 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=45.3
Q ss_pred eccCCccCCCCHHHHHHHHHhccCCCceEEEEeeccc----ccccHHHHHHHHHhcCCc-EEE
Q 014766 5 AICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG----DRLNFGLAAEQAKSEGYK-VEI 62 (419)
Q Consensus 5 av~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtG----D~lnFg~A~e~a~~~G~~-v~~ 62 (419)
+..||+|+|..-.|.-.|++.+....|||+.. +..| |-=+||+++++.+.-|++ ++.
T Consensus 253 c~tgd~l~~~~~~qL~~Al~~I~~eGGvlvYL-rqegr~an~~RdygigaqIL~dLGi~~irL 314 (339)
T PRK09314 253 GSDFELLTSDKFSELLKAIEYLKKNGGVLIFL-NTESKENNQVKDYGIGAQILKYLGIKDIKL 314 (339)
T ss_pred CChHHhhCCCcHHHHHHHHHHHHHcCCEEEEE-cCCCCCcccccchhHHHHHHHHCCCCEEEE
Confidence 56789999998899999999986545988755 3333 578999999999999985 554
No 22
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=66.68 E-value=4.5 Score=37.29 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=35.6
Q ss_pred eeccCCccCC---CCHHHHHHHHHhcc-CCCceEEEEee-------------------------------cccccccHHH
Q 014766 4 AAICGDVFAS---PPVDSILAGIHAVT-GPMGCLLIVTN-------------------------------YTGDRLNFGL 48 (419)
Q Consensus 4 aav~G~vFaS---Ps~~~i~~ai~~v~-~~~Gvl~iv~N-------------------------------YtGD~lnFg~ 48 (419)
.++.||+|-| ....|+-.|++.+. .+.|||+.+.+ +..|-=+||+
T Consensus 51 ~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G~GVlVyL~~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygi 130 (169)
T PF00925_consen 51 ECLTGDVFGSLRCDCGWQLDKAMRRIAEEGRGVLVYLRQEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGI 130 (169)
T ss_dssp --HHHHTS--SSSSHHHHHHHHHHHHHHHTSEEEEEE--TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THH
T ss_pred cccHhhhcCCCCCCCcHHHHHHHHHHHHcCCEEEEEEcCCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHH
Confidence 3566899998 56788888998886 57799999821 1256678999
Q ss_pred HHHHHHhcCCc
Q 014766 49 AAEQAKSEGYK 59 (419)
Q Consensus 49 A~e~a~~~G~~ 59 (419)
+++..+.-|++
T Consensus 131 gaqIL~dLGV~ 141 (169)
T PF00925_consen 131 GAQILRDLGVK 141 (169)
T ss_dssp HHHHHHHTT--
T ss_pred HHHHHHHcCCC
Confidence 99999998886
No 23
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=63.10 E-value=14 Score=32.72 Aligned_cols=77 Identities=30% Similarity=0.368 Sum_probs=56.0
Q ss_pred CHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHHH
Q 014766 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (419)
Q Consensus 15 s~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~v~KiaG 94 (419)
++++|.++|+.+++ .|||+++== -|=.+|-.||.|+...+ .+|++ .| .| .+ =|.+ .|-
T Consensus 44 ~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n~~~a~e~~~~~-~~v~~---~d----aP---lV-----EGa~----~Aa 101 (124)
T PRK14484 44 SFDQIQEAIEKNES-DGVLIFFDL-GSAEMNAEMAIEMLDGE-KKIII---ID----AP---IV-----EGAF----TAA 101 (124)
T ss_pred hHHHHHHHHHhcCc-CCeEEEEeC-CChHHHHHHHHHhcCCC-CcEEE---EC----Cc---HH-----HHHH----HHH
Confidence 57899999999999 999999855 88899999999998655 44444 22 11 11 1111 233
Q ss_pred HHHHcCCCHHHHHHHHHHH
Q 014766 95 AAAAAGLSLADVAAEAKRA 113 (419)
Q Consensus 95 A~A~~G~~L~~v~~~a~~~ 113 (419)
..|..|.+|++|.+.++..
T Consensus 102 v~~~~g~~l~~v~~~~~~~ 120 (124)
T PRK14484 102 VLLSAGASLDEILAELKEL 120 (124)
T ss_pred HHHcCCCCHHHHHHHHHHh
Confidence 4567899999999988864
No 24
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=61.88 E-value=9.2 Score=39.85 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=40.3
Q ss_pred eeccCCccCCC----CHHHHHHHHHhccC-CCceEEEEeeccc------------------------ccccHHHHHHHHH
Q 014766 4 AAICGDVFASP----PVDSILAGIHAVTG-PMGCLLIVTNYTG------------------------DRLNFGLAAEQAK 54 (419)
Q Consensus 4 aav~G~vFaSP----s~~~i~~ai~~v~~-~~Gvl~iv~NYtG------------------------D~lnFg~A~e~a~ 54 (419)
.+..||||-|. .-.|...|++.+.. +.|||+...|-.| |--+||+|+++.|
T Consensus 256 ecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~~~~gl~~kl~a~~~~~~~~~~~d~r~~r~ygigAqILr 335 (369)
T PRK12485 256 IDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHESSQALLERIPQLTQPPRQYQRSQSRIYSEVGTGAQILQ 335 (369)
T ss_pred ccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCCchhhHHHHHHHHHhHhhCCCcccchhhhhhhHHHHHHH
Confidence 46779999884 34579999999764 5599876652222 0115788888888
Q ss_pred hcCCc-EEEE
Q 014766 55 SEGYK-VEIV 63 (419)
Q Consensus 55 ~~G~~-v~~v 63 (419)
.-|++ |+..
T Consensus 336 ~LGV~kirLL 345 (369)
T PRK12485 336 DLGVGKLRHL 345 (369)
T ss_pred HcCCCEEEEC
Confidence 88864 4443
No 25
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=60.86 E-value=38 Score=33.30 Aligned_cols=95 Identities=22% Similarity=0.152 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHhcc-CCCceEEEE--eecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhh
Q 014766 12 ASPPVDSILAGIHAVT-GPMGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTIL 88 (419)
Q Consensus 12 aSPs~~~i~~ai~~v~-~~~Gvl~iv--~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~ 88 (419)
+.||+.++.++++... .+.-||+|- ..-+|=.=|+-+|+++.. +++|.+ =| -|-.-+|.-+
T Consensus 60 S~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~--~~~i~V---iD-----------S~~~s~~~g~ 123 (275)
T TIGR00762 60 SQPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVD--EAKVTV---ID-----------SKSASMGLGL 123 (275)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCC--CCCEEE---EC-----------ChHHHHHHHH
Confidence 3478888888987653 334566553 334444445555554432 233332 22 2445567788
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcccceee
Q 014766 89 VNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGV 122 (419)
Q Consensus 89 v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigv 122 (419)
+..-+..+.++|.+++||.+..++..+++.+.=+
T Consensus 124 ~v~~a~~~~~~G~s~~eI~~~l~~~~~~~~~~f~ 157 (275)
T TIGR00762 124 LVLEAAKLAEEGKSLEEILAKLEELRERTKLYFV 157 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEE
Confidence 8888999999999999999999999999887644
No 26
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=58.29 E-value=14 Score=34.65 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=25.3
Q ss_pred eeccCCccCCCC---HHHHHHHHHhcc-CCCceEEEEe
Q 014766 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVT 37 (419)
Q Consensus 4 aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~ 37 (419)
.+..||||.|.. ..|+..|++.+. .+.|||+.+.
T Consensus 50 ~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~GVlVyL~ 87 (191)
T TIGR00505 50 ECLTGDALHSLRCDCGFQLEAALKQIAEEGRGVLIYLR 87 (191)
T ss_pred ccCHHHHhcCCCCCCCchHHHHHHHHHhcCCEEEEEEC
Confidence 356789998753 368888999875 5679988774
No 27
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=57.23 E-value=2.2e+02 Score=28.81 Aligned_cols=176 Identities=20% Similarity=0.289 Sum_probs=103.3
Q ss_pred eeccCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhc--CCcEEEEEecccccCCCCCCCCCcc
Q 014766 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE--GYKVEIVIVGDDCALPPPRGIAGRR 81 (419)
Q Consensus 4 aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~--G~~v~~v~v~DDva~~~~~~~~gRR 81 (419)
..+.|.-=-.||+..+++||+.++... |+++-.| -|.=||+++|.+. +.+|.+| |.+ .=-.
T Consensus 119 ~vi~ggqt~nPS~~dl~~Ai~~~~a~~-VivLPNn-----~ni~~aa~qa~~~~~~~~v~Vi---------pTk--s~~q 181 (313)
T PF13684_consen 119 VVISGGQTMNPSTEDLLNAIEKVGADE-VIVLPNN-----KNIILAAEQAARLSEDKNVVVI---------PTK--SIPQ 181 (313)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEEeCC-----chHHHHHHHHHHHhcCCCEEEE---------ecC--CHHH
Confidence 345555435799999999999986654 6666644 4777888887753 3333332 222 1223
Q ss_pred ccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecCccccCCCCCCCCcCCCeeEEeccccCCCCcccccCC
Q 014766 82 GLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQ 161 (419)
Q Consensus 82 GlaG~v~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~ 161 (419)
|++..+ +-+.-.++++-.+.-+.+..+++|.-+...... +.-....+..|.+ +||.+..-+... .
T Consensus 182 GlaAl~--------~~dp~~~~~~n~~~M~ea~~~v~~~~It~Avrd--~~~~~~~i~~gd~---igl~~~~i~~~~--~ 246 (313)
T PF13684_consen 182 GLAALL--------VFDPEADLEENVEAMTEAAARVRTGEITYAVRD--TKINGGEIKKGDY---IGLVDGKIVVVG--K 246 (313)
T ss_pred HHHHHH--------HhCccCChHHHHHHHHHHHhhCeeeeEEEeeec--ceecCcccccCCE---EEEeCCEEEEEc--C
Confidence 433211 113445888888888888888888777554221 1112333444444 566544443332 3
Q ss_pred CHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEE
Q 014766 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVE 225 (419)
Q Consensus 162 ~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~-gi~v~ 225 (419)
+..+.+..+++++++ ++.+++-++=| ..++.-| +..+.++|+++| ++.+.
T Consensus 247 ~~~~~~~~ll~~l~~---------~~~elvTi~~G-~~~~~~~----a~~l~~~l~~~~p~~eve 297 (313)
T PF13684_consen 247 DLEEALKKLLEKLLD---------EDGELVTIYYG-EDVSEEE----AEALAEFLEEKYPDVEVE 297 (313)
T ss_pred CHHHHHHHHHHHhhc---------cCCeEEEEEec-CCCCHHH----HHHHHHHHHHHhCCeEEE
Confidence 577888888888864 35678878777 4444434 445555666665 56665
No 28
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=56.89 E-value=17 Score=34.45 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=25.4
Q ss_pred eeccCCccCCCCH---HHHHHHHHhcc-CCCceEEEEe
Q 014766 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (419)
Q Consensus 4 aav~G~vFaSPs~---~~i~~ai~~v~-~~~Gvl~iv~ 37 (419)
.+..||||.|... .|+..|++.+. .+.|||+.+.
T Consensus 53 ~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~G~GVlVyL~ 90 (197)
T PRK00393 53 ECLTGDALFSLRCDCGFQLEAALERIAEEGRGILLYLR 90 (197)
T ss_pred ccCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEc
Confidence 3567899987633 67888999975 5669988774
No 29
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=54.79 E-value=36 Score=33.56 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHh-ccCCC-ceEEEE--eecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhh
Q 014766 12 ASPPVDSILAGIHA-VTGPM-GCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (419)
Q Consensus 12 aSPs~~~i~~ai~~-v~~~~-Gvl~iv--~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v 87 (419)
+.||+.++.+..+. ...+. -||+|- ...+|=-=|.-+|+++. .+.+|.++ + -|-.-+|.-
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~Vi--D------------S~~~s~g~g 124 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHVI--D------------SKSVSAGQG 124 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEEE--E-------------SS-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEEE--e------------CCCcchhhh
Confidence 45889999999987 55554 466654 34455444556666655 34554432 1 234445666
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeecC------ccccCC----------CCCCCCcCCCeeEEeccccC
Q 014766 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS------VCTLPG----------QVTSDRLGPGKMELGLGIHG 151 (419)
Q Consensus 88 ~v~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval~------~c~~Pg----------~~~~~~l~~~e~E~G~GiHg 151 (419)
++..-|-.++++|.|++||.+..++..+++.+.=+-=+ +--++. =+|-..+.+|+++.
T Consensus 125 ~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~------ 198 (280)
T PF02645_consen 125 LLVLEAAKLIEQGKSFEEIVEKLEELRERTRTYFVVDDLKYLRKGGRISKAAAFIGNLLNIKPILSFDDGEIEP------ 198 (280)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHTEEEEEEES-SHHHHHCTSSGHHHHHHHHCTTEEEEEEEETTEEEE------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEechHHHHHHCCCcCchhhhhhhhhcCcEEEEEECCEEEE------
Confidence 66667779999999999999999999999887654221 111111 01223333333322
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeeee
Q 014766 152 EPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTG 230 (419)
Q Consensus 152 EpG~~~~~~~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi-~v~r~~~G 230 (419)
..+..+.+..++.|++.+... .. ......+.+...- .. |. +.++.+.|+++++. .+....+|
T Consensus 199 -----~~k~Rg~kka~~~l~~~~~~~----~~-~~~~~~i~i~~~~---~~-e~---a~~l~~~l~~~~~~~~~~~~~~~ 261 (280)
T PF02645_consen 199 -----VGKVRGRKKAIKKLIEIIKEE----IK-DPKNYRIAISHAG---NE-EE---AEELKEELKEEFPNAEIIISPIG 261 (280)
T ss_dssp -----EEEESSHHHHHHHHHHHHHHH----HC-TGCGEEEEEEESS----H-HH---HHHHHHHHHHHSTTEEEEEEE--
T ss_pred -----EeeeccHHHHHHHHHHHhhhh----hh-cCCceeEEEEEcC---CH-HH---HHHHHHHHHHhcCCCcEEEEEEC
Confidence 345567778888888887432 11 1223333333332 22 33 35555666666555 55555566
Q ss_pred ccccc
Q 014766 231 SFMTS 235 (419)
Q Consensus 231 ~~~Ts 235 (419)
.-+++
T Consensus 262 ~~i~~ 266 (280)
T PF02645_consen 262 PVIGA 266 (280)
T ss_dssp HHHHH
T ss_pred cEEEE
Confidence 55554
No 30
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=51.91 E-value=23 Score=33.34 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=24.8
Q ss_pred eccCCccCCCCH---HHHHHHHHhcc-CCCceEEEEe
Q 014766 5 AICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (419)
Q Consensus 5 av~G~vFaSPs~---~~i~~ai~~v~-~~~Gvl~iv~ 37 (419)
+..+|+|.+... .|+..|++.+. .+.|||+.+.
T Consensus 53 ~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~g~GVlV~l~ 89 (193)
T cd00641 53 CLTGDVFGSLRCDCGPQLEEALEEIAEEGGGVLLYLR 89 (193)
T ss_pred CCHHHHhcCCCCCCcchHHHHHHHHHHhCCEEEEEEC
Confidence 456889986533 67888999975 5679988774
No 31
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=51.27 E-value=27 Score=32.16 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=53.3
Q ss_pred EeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeE
Q 014766 145 LGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAV 224 (419)
Q Consensus 145 ~G~GiHgEpG~~~~~~~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v 224 (419)
+|+-.+|.. ....+..+.+++++..++.|... .+..++.++=-.+|| +++-++.++|+++ |.+|
T Consensus 31 ~~i~~~~~~-~~~~~~~si~~la~~y~~~I~~~-------~~~gp~~L~G~S~Gg-------~lA~E~A~~Le~~-G~~v 94 (229)
T PF00975_consen 31 YGIEYPGRG-DDEPPPDSIEELASRYAEAIRAR-------QPEGPYVLAGWSFGG-------ILAFEMARQLEEA-GEEV 94 (229)
T ss_dssp EEECSTTSC-TTSHEESSHHHHHHHHHHHHHHH-------TSSSSEEEEEETHHH-------HHHHHHHHHHHHT-T-SE
T ss_pred EEEecCCCC-CCCCCCCCHHHHHHHHHHHhhhh-------CCCCCeeehccCccH-------HHHHHHHHHHHHh-hhcc
Confidence 444444333 33456689999999999999763 223389999999998 6888889999999 9999
Q ss_pred EEee-eeccccc
Q 014766 225 ERVY-TGSFMTS 235 (419)
Q Consensus 225 ~r~~-~G~~~Ts 235 (419)
.+++ +....+.
T Consensus 95 ~~l~liD~~~p~ 106 (229)
T PF00975_consen 95 SRLILIDSPPPS 106 (229)
T ss_dssp SEEEEESCSSTT
T ss_pred CceEEecCCCCC
Confidence 8765 4544443
No 32
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=50.33 E-value=32 Score=29.33 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=35.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeee
Q 014766 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (419)
Q Consensus 190 v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G 230 (419)
+.+=|...|+.+.-..--+++++.+.|++.+||.+.|+|+-
T Consensus 59 a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 59 CFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 44557888999987788899999999999999999999984
No 33
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=48.87 E-value=42 Score=32.96 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccc
Q 014766 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDC 69 (419)
Q Consensus 12 aSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDv 69 (419)
...+++++.++++.-...+.+++.--||+|.+.+..--++.+++.|+ .++-|++
T Consensus 138 ~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~----~livDeA 191 (294)
T cd00615 138 GGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGL----PVLVDEA 191 (294)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCC----eEEEECc
Confidence 45688899888876334455555556999999999888889988775 3455555
No 34
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=45.37 E-value=21 Score=38.18 Aligned_cols=37 Identities=16% Similarity=0.395 Sum_probs=27.5
Q ss_pred eeccCCccCCCCH---HHHHHHHHhcc-CCCceEEEEeecc
Q 014766 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTNYT 40 (419)
Q Consensus 4 aav~G~vFaSPs~---~~i~~ai~~v~-~~~Gvl~iv~NYt 40 (419)
.+..||||-|..- .|+-+|++.+. .+.|||+..-|-.
T Consensus 291 ec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr~qe 331 (450)
T PLN02831 291 ECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHE 331 (450)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcCCC
Confidence 4678999998643 68888999976 5669988765333
No 35
>PRK08815 GTP cyclohydrolase; Provisional
Probab=43.70 E-value=21 Score=37.31 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=28.2
Q ss_pred eeccCCccCCC---CHHHHHHHHHhcc-CCCceEEEEeeccccc
Q 014766 4 AAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNYTGDR 43 (419)
Q Consensus 4 aav~G~vFaSP---s~~~i~~ai~~v~-~~~Gvl~iv~NYtGD~ 43 (419)
.+..||||-|. .-.|.-+|++.+. .+.|||+.+ |-.|-.
T Consensus 224 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL-~qegrg 266 (375)
T PRK08815 224 SCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGRG 266 (375)
T ss_pred cCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEE-cCCCcc
Confidence 46679999875 3478888999975 667998866 545433
No 36
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=43.29 E-value=28 Score=36.23 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=41.3
Q ss_pred eeccCCccCCC---CHHHHHHHHHhcc-CCCceEEEEeec-cc---------------------ccccHHHHHHHHHhcC
Q 014766 4 AAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNY-TG---------------------DRLNFGLAAEQAKSEG 57 (419)
Q Consensus 4 aav~G~vFaSP---s~~~i~~ai~~v~-~~~Gvl~iv~NY-tG---------------------D~lnFg~A~e~a~~~G 57 (419)
.+..||||-|- ...|+..|++.+. .+.|||+...|- .| |-=+||+|++..|.-|
T Consensus 256 ~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~qegrgigl~~k~~~~~~an~~lg~~~d~R~y~igaqIL~~Lg 335 (367)
T PRK14019 256 PLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLNCGDDGEHLLDRFRAEEAAAALKRRPVDYRTYGIGAQILRDLG 335 (367)
T ss_pred ccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEccCCchhhHHHhhhhhhhhhhhcCCCcccceehHHHHHHHHcC
Confidence 45679999874 3578999999975 456998866443 12 3446778888888877
Q ss_pred Cc-EEEE
Q 014766 58 YK-VEIV 63 (419)
Q Consensus 58 ~~-v~~v 63 (419)
++ |+.+
T Consensus 336 v~~irLl 342 (367)
T PRK14019 336 VGKMRLL 342 (367)
T ss_pred CCeEEEC
Confidence 64 4443
No 37
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=42.81 E-value=52 Score=28.72 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCCcc
Q 014766 164 DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMAGF 241 (419)
Q Consensus 164 ~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Tsl~m~Gf 241 (419)
.+-+..++..+.+ ++...+..++.|++||-|-....+-..-...-...|.++ |+++. -+|+=|++.+++.-
T Consensus 13 ~~k~~~~l~Nl~N----ll~~~p~~~IeVV~~g~ai~~l~~~~~~~~~~~~~L~~~-GV~~~--aC~nSl~a~~i~~d 83 (112)
T COG1416 13 ESKVNMVLGNLTN----LLEDDPSVEIEVVAHGPAIAFLSEKANIAAVRVAELAQQ-GVEFV--ACGNSLRAHDIDED 83 (112)
T ss_pred HHHHHHHHHHHHH----HhcCCCCceEEEEEeCchhHHhhhhccchhHHHHHHHHC-CCEEE--EecchHHHcCCCHH
Confidence 4556667777654 456668889999999999888877777666566677777 87764 78999999887753
No 38
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=41.70 E-value=37 Score=29.38 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=34.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeee
Q 014766 191 VLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (419)
Q Consensus 191 ~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G 230 (419)
.+=|..+|+.+.-.---+...+.+.|++++||...|+|+-
T Consensus 60 ~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~ 99 (113)
T PTZ00450 60 YVRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVF 99 (113)
T ss_pred EEEEEEecCcCHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 4458999999887677788999999999999999999984
No 39
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.04 E-value=44 Score=29.77 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHH
Q 014766 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (419)
Q Consensus 14 Ps~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~v~Kia 93 (419)
-|+..|.+||...+..+++|..+ ---.=+||-.||.|+...+ +.++..++ ..| .+ =|.+ .+
T Consensus 44 Ts~~~I~~aI~~~~~ad~~lif~-DlGSA~mn~e~a~El~d~e-i~~~~~~~----daP----lV-----EGa~----~A 104 (129)
T COG3412 44 TSFEKIMEAIEKANEADHVLVFY-DLGSAKLNAEMALELLDKE-IAIKNILC----DAP----LV-----EGAY----AA 104 (129)
T ss_pred cCHHHHHHHHHhccccCceEEEE-ecchhhhhHHHHHHHhcch-HHHHhhhc----ccc----hh-----hhHH----HH
Confidence 36899999999877777777666 6777799999999998544 44443321 122 11 1111 23
Q ss_pred HHHHHcCCCHHHHHHHHHH
Q 014766 94 GAAAAAGLSLADVAAEAKR 112 (419)
Q Consensus 94 GA~A~~G~~L~~v~~~a~~ 112 (419)
-+.++.|.|++||..-+..
T Consensus 105 aa~~~~ga~~~evi~~~~e 123 (129)
T COG3412 105 AALLQGGASIDEVIAEALE 123 (129)
T ss_pred HHHHhcCCCHHHHHHHHHh
Confidence 4456789999888765543
No 40
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=40.25 E-value=38 Score=35.71 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=26.0
Q ss_pred eeccCCccCCCC---HHHHHHHHHhcc-CCCceEEEEe
Q 014766 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVT 37 (419)
Q Consensus 4 aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~ 37 (419)
.+..||||-|-. ..|+-+|++.+. .+.|||+...
T Consensus 257 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~ 294 (402)
T PRK09311 257 ECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMR 294 (402)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEe
Confidence 466799998743 478888999975 5669988776
No 41
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=37.82 E-value=40 Score=32.30 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=28.1
Q ss_pred eccCCccC--------CCCHHHHHHHHHhcc-CCCceEEEEeecc
Q 014766 5 AICGDVFA--------SPPVDSILAGIHAVT-GPMGCLLIVTNYT 40 (419)
Q Consensus 5 av~G~vFa--------SPs~~~i~~ai~~v~-~~~Gvl~iv~NYt 40 (419)
.++||+|- +|...++.+.++... .+..|.+|.+|+-
T Consensus 37 ~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD 81 (241)
T PRK05340 37 YILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRD 81 (241)
T ss_pred EEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 47899994 566778888887765 3478999999995
No 42
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=35.13 E-value=1.3e+02 Score=30.45 Aligned_cols=61 Identities=21% Similarity=0.190 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccC
Q 014766 165 VVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLD 237 (419)
Q Consensus 165 ~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Tsl~ 237 (419)
+.+.+.++.+..+ ++-+.|+|.||.=||+..- =..+++++ +.|.++ + |+.++++.++-|=.
T Consensus 83 ~~~~~~l~~~~~~-------~~vk~vvL~inSPGG~v~a-s~~i~~~l-~~l~~~-~--PV~v~v~~~AASGG 143 (317)
T COG0616 83 DDIEEILRAARAD-------PSVKAVVLRINSPGGSVVA-SELIARAL-KRLRAK-K--PVVVSVGGYAASGG 143 (317)
T ss_pred HHHHHHHHHHhcC-------CCCceEEEEEECcCCchhH-HHHHHHHH-HHHhhc-C--CEEEEECCeecchh
Confidence 3446666666442 3457899999999998762 22344443 455566 5 88899988776643
No 43
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=33.83 E-value=1.9e+02 Score=27.70 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=35.5
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhh-cCCeEE
Q 014766 151 GEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE-HGLAVE 225 (419)
Q Consensus 151 gEpG~~~~~~~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~-~gi~v~ 225 (419)
+=||.-..+..+...++..+++.|... |=+-+++||+=|| +. ...+.+.++|.++ .++.+.
T Consensus 72 ~fpGTisl~~~t~~~~l~di~~sl~~~---------Gf~~ivivngHgG--N~---~~l~~~~~~l~~~~~~~~v~ 133 (237)
T PF02633_consen 72 GFPGTISLSPETLIALLRDILRSLARH---------GFRRIVIVNGHGG--NI---AALEAAARELRQEYPGVKVF 133 (237)
T ss_dssp TSTT-BBB-HHHHHHHHHHHHHHHHHH---------T--EEEEEESSTT--HH---HHHHHHHHHHHHHGCC-EEE
T ss_pred CCCCeEEeCHHHHHHHHHHHHHHHHHc---------CCCEEEEEECCHh--HH---HHHHHHHHHHHhhCCCcEEE
Confidence 357766555556667777777776542 4466999999999 22 2345555555555 466665
No 44
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=33.28 E-value=43 Score=28.56 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=33.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeee
Q 014766 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (419)
Q Consensus 190 v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G 230 (419)
..+=|..+|+.+.-+--.++.++.+.|++++||...|.|+=
T Consensus 57 a~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~ 97 (114)
T PF01187_consen 57 AFVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYIN 97 (114)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEE
T ss_pred EEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 34448899999887777999999999999999999999973
No 45
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=32.39 E-value=75 Score=23.62 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=24.5
Q ss_pred EEEeecccccccHHHHHHHHHhcCCcEEEEEe
Q 014766 34 LIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIV 65 (419)
Q Consensus 34 ~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v 65 (419)
+.+-||+| |+..-|.+.+++.|+++...-.
T Consensus 1 V~vPd~~g--~~~~~a~~~l~~~g~~~~~~~~ 30 (63)
T PF03793_consen 1 VTVPDLVG--MTYDEAKSILEAAGLTVNVVEE 30 (63)
T ss_dssp EEE-TTTT--SBHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCcCC--CcHHHHHHHHHHCCCEEEEEEE
Confidence 35789999 9999999999999998887775
No 46
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=32.00 E-value=64 Score=27.61 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=24.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEE
Q 014766 192 LMINGLGATPVMELMIAAGKAVPNLQLEHGLAVER 226 (419)
Q Consensus 192 ~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r 226 (419)
++|| .|+.+.-+...+.+.+.+...++|||....
T Consensus 66 fivN-~g~Ata~dv~~Li~~v~~~V~~~~Gi~Le~ 99 (105)
T PF02873_consen 66 FIVN-HGGATAADVLALIEEVRERVKEKFGIELEP 99 (105)
T ss_dssp EEEE--SS--HHHHHHHHHHHHHHHHHHHS--B-B
T ss_pred eEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCeeee
Confidence 4455 688888899999999999999999987653
No 47
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=31.34 E-value=95 Score=28.86 Aligned_cols=58 Identities=21% Similarity=0.455 Sum_probs=38.6
Q ss_pred cCCCC-CCCCCeEEEEEcC--------------------CCCCh-----HHHHHHHHHHHHHhhhhhcCCeEEEe-eeec
Q 014766 179 TNYVP-ITRGNRVVLMING--------------------LGATP-----VMELMIAAGKAVPNLQLEHGLAVERV-YTGS 231 (419)
Q Consensus 179 r~~~~-~~~~~~v~~lvN~--------------------lG~t~-----~~El~~~~~~~~~~L~~~~gi~v~r~-~~G~ 231 (419)
+.|++ .+.||+=++++|| .||+. .-+..-+++.+...|.++ |+--++. .+|.
T Consensus 75 Q~flp~i~~GDkRii~~nG~~~~av~R~P~~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~~-Gl~f~GiDvig~ 153 (173)
T PF02955_consen 75 QPFLPEIKEGDKRIILFNGEPSHAVRRIPAKGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRED-GLLFVGIDVIGD 153 (173)
T ss_dssp EE--GGGGG-EEEEEEETTEE-SEEEEE--SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHT-T--EEEEEEETT
T ss_pred EeccccccCCCEEEEEECCEEhHHeecCCCCCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhhc-CcEEEEEecccc
Confidence 34665 5678999999997 56654 346667889999999999 9766664 4588
Q ss_pred cccccC
Q 014766 232 FMTSLD 237 (419)
Q Consensus 232 ~~Tsl~ 237 (419)
|+|-.|
T Consensus 154 ~l~EiN 159 (173)
T PF02955_consen 154 KLTEIN 159 (173)
T ss_dssp EEEEEE
T ss_pred ceEEEe
Confidence 877544
No 48
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=31.02 E-value=70 Score=33.21 Aligned_cols=119 Identities=20% Similarity=0.299 Sum_probs=70.6
Q ss_pred HHHHHHH-------HHHcCCCHHHHHHHHHHHHhcccceeeecCccccCCCCCCCCcCCCeeEEeccccCCCCcccccCC
Q 014766 89 VNKIAGA-------AAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQ 161 (419)
Q Consensus 89 v~KiaGA-------~A~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~ 161 (419)
|+||.|. +.++|++-+|+.+-. -.++|| ...+|++++|||-+=||.-|-
T Consensus 10 v~kiFG~~~~~a~~~~~~G~~k~ei~~~t------g~vvGv---------~~~sl~v~~GeIfViMGLSGS--------- 65 (386)
T COG4175 10 VYKIFGKNPKRALKLLDQGKSKAEILKKT------GLVVGV---------NDASLDVEEGEIFVIMGLSGS--------- 65 (386)
T ss_pred ceeecccCHHHHHHHHHcCCcHHHHHHhh------CcEEee---------ccceeeecCCeEEEEEecCCC---------
Confidence 4566663 567899988887532 233333 566899999999999998762
Q ss_pred CHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcC--CCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 014766 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMING--LGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (419)
Q Consensus 162 ~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~--lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Tsl~m~ 239 (419)
-+...-+++++|.++. .| -++|+| .-..+.-||--+-++-....-+.|+.=|+ .|-|+-.
T Consensus 66 -GKSTLvR~~NrLiept-------~G---~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh-------rtVl~Nv 127 (386)
T COG4175 66 -GKSTLVRLLNRLIEPT-------RG---EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH-------RTVLENV 127 (386)
T ss_pred -CHHHHHHHHhccCCCC-------Cc---eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc-------hhHhhhh
Confidence 2344456777775542 22 133333 33445555555444444444444455554 5666666
Q ss_pred cceEEEeecc
Q 014766 240 GFSISIMKAD 249 (419)
Q Consensus 240 GfSiTll~ld 249 (419)
+|.+.+=-++
T Consensus 128 ~fGLev~Gv~ 137 (386)
T COG4175 128 AFGLEVQGVP 137 (386)
T ss_pred hcceeecCCC
Confidence 7777666666
No 49
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=30.81 E-value=59 Score=28.17 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=25.6
Q ss_pred CccCCCCHHHHHHHHHhccCCCceEEEEeeccc
Q 014766 9 DVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG 41 (419)
Q Consensus 9 ~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtG 41 (419)
.|...|+.++.++.......+.+.++|+.|||.
T Consensus 80 ~i~v~~d~~~a~~~~~~~~~~~~~~yil~tYTA 112 (113)
T PF08353_consen 80 KIIVEEDLEEALDAFLIKSDPTDKVYILATYTA 112 (113)
T ss_pred HeEecCCHHHHHHHHHHhcCCCCcEEEEECCcC
Confidence 355578888888886556677888999999994
No 50
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.75 E-value=4.8e+02 Score=26.06 Aligned_cols=193 Identities=14% Similarity=0.143 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHhccCCC--ceEEEE--eecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhH
Q 014766 14 PPVDSILAGIHAVTGPM--GCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILV 89 (419)
Q Consensus 14 Ps~~~i~~ai~~v~~~~--Gvl~iv--~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~v 89 (419)
||+..+.++.+...... .||+|- ..-+| .|.. +..|++..-+.++.+++=..+. .|.-+.
T Consensus 64 Ps~~~~~~~~~~l~~~g~~~vi~i~iSs~LSg---ty~~-a~~a~~~~~~~~v~viDS~~~s------------~~~g~~ 127 (282)
T COG1307 64 PSPGEFEELFEKLLQKGYDEVISIHISSGLSG---TYQS-AQLAAELVEGAKVHVIDSKSVS------------MGLGFL 127 (282)
T ss_pred cCHHHHHHHHHHHHhCCCcEEEEEEcCCCccH---HHHH-HHHHHHhccCceEEEEcCcchh------------hHHHHH
Confidence 77888888888876543 465553 22233 2444 4445544333444444322221 233445
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcccceee--ecCccccCCCC--------------CCCCcCCCeeEEeccccCCC
Q 014766 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGV--ALSVCTLPGQV--------------TSDRLGPGKMELGLGIHGEP 153 (419)
Q Consensus 90 ~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigv--al~~c~~Pg~~--------------~~~~l~~~e~E~G~GiHgEp 153 (419)
.+=+..++++|.|++|+.+..+++.+++.+.=+ -|+++.-=|+- |...+.+|++++
T Consensus 128 v~~a~~l~~~G~s~~ei~~~l~~~~~~t~~~~~v~~L~~L~kgGRIs~~~a~lg~lL~ikPIl~~~~G~~~~-------- 199 (282)
T COG1307 128 VLEAAELAKAGKSFEEILKKLEEIREKTKAYFVVDDLDNLVKGGRISKAAAFLGNLLKIKPILSFEDGELVL-------- 199 (282)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECchhHHHhCCCcchhHHHHHhhhcceEEEEEeCCEEEE--------
Confidence 555678999999999999999999999876543 24555444421 222333333322
Q ss_pred CcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCe--EEEeeee-
Q 014766 154 GAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLA--VERVYTG- 230 (419)
Q Consensus 154 G~~~~~~~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~--v~r~~~G- 230 (419)
-.+..+-...++.|++.+.+. .. +.....++++.+-+. | ......+.|.++ ++. +.-...|
T Consensus 200 ---~~K~R~~kka~~~l~~~~~~~----~~-~~~~~~~~~~~~~~~----e---~~~~l~~~l~~~-~~~~~~~~~~~~~ 263 (282)
T COG1307 200 ---LGKVRGQKKAIKKLIELLKKE----VK-DGAGYRVAVLHGDAP----E---AAEQLKEKLLNK-FIEKDISISELGP 263 (282)
T ss_pred ---EeecccHHHHHHHHHHHHHHH----hc-cCCceEEEEEeCCch----h---HHHHHHHHHHhh-cCCCCceeeccCC
Confidence 346667778888888888764 22 122233444444221 2 334445555555 443 3434444
Q ss_pred ccccccCCCcceEEEe
Q 014766 231 SFMTSLDMAGFSISIM 246 (419)
Q Consensus 231 ~~~Tsl~m~GfSiTll 246 (419)
...|-.+-..++|.+.
T Consensus 264 vi~~H~G~ga~~i~~~ 279 (282)
T COG1307 264 VIGTHTGPGALGIGVI 279 (282)
T ss_pred EEEEEECCCeEEEEEE
Confidence 3444556556666554
No 51
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=30.63 E-value=1.9e+02 Score=29.58 Aligned_cols=126 Identities=13% Similarity=0.197 Sum_probs=80.6
Q ss_pred HHhcccceeeecCccccCC-CCCCCCcCCC----eeEEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCC
Q 014766 113 ASEMVGTMGVALSVCTLPG-QVTSDRLGPG----KMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRG 187 (419)
Q Consensus 113 ~~~~~~tigval~~c~~Pg-~~~~~~l~~~----e~E~G~GiHgEpG~~~~~~~~a~~l~~~~l~~l~~~~r~~~~~~~~ 187 (419)
+.+.++..|+-..-+.++| ..-++.|-++ |-|| ++||... +.+++ +++++++... +++.
T Consensus 67 ~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tei-----n~~Gp~i----s~~~~-~~~l~~~~~~------l~~~ 130 (310)
T COG1105 67 FVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEI-----NFPGPEI----SEAEL-EQFLEQLKAL------LESD 130 (310)
T ss_pred HHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEe-----cCCCCCC----CHHHH-HHHHHHHHHh------cccC
Confidence 3445566777777888888 4455655433 4454 5677432 33333 6667666431 3333
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccc-cccCCCcceEEEeecc-HHHHHhhcCcCCC
Q 014766 188 NRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFM-TSLDMAGFSISIMKAD-EVILKHLDATTKA 262 (419)
Q Consensus 188 ~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~-Tsl~m~GfSiTll~ld-~~~~~~ldap~~a 262 (419)
.+ |.++ |+.|+-=-.-.+.++.+.+.++ |.++.---.|..+ .+|+++ -.|+|-+ +|+..++..|-..
T Consensus 131 -d~-Vvls--GSlP~g~~~d~y~~li~~~~~~-g~~vilD~Sg~~L~~~L~~~---P~lIKPN~~EL~~~~g~~~~~ 199 (310)
T COG1105 131 -DI-VVLS--GSLPPGVPPDAYAELIRILRQQ-GAKVILDTSGEALLAALEAK---PWLIKPNREELEALFGRELTT 199 (310)
T ss_pred -CE-EEEe--CCCCCCCCHHHHHHHHHHHHhc-CCeEEEECChHHHHHHHccC---CcEEecCHHHHHHHhCCCCCC
Confidence 34 3444 4444433346788889999888 9999887788666 588888 7788876 6788887777553
No 52
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=29.83 E-value=43 Score=35.21 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=27.8
Q ss_pred ceeccCCccCCCC---HHHHHHHHHhccCCCceEEEEeeccccc
Q 014766 3 TAAICGDVFASPP---VDSILAGIHAVTGPMGCLLIVTNYTGDR 43 (419)
Q Consensus 3 ~aav~G~vFaSPs---~~~i~~ai~~v~~~~Gvl~iv~NYtGD~ 43 (419)
+.+..||||-|-. -.|.-.|++.+....|||+. -|..|--
T Consensus 239 Sec~tgDvfgs~~CdCg~qL~~Al~~Ia~eGGvlvY-Lrqegrg 281 (387)
T PRK09318 239 SECVTGDTLSSLRCDCGSQLANFLRMISKEGGILIY-LRQEGRG 281 (387)
T ss_pred ecccHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEE-ECCCCcc
Confidence 3467899998743 37888999998643399864 4666543
No 53
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=28.44 E-value=61 Score=26.78 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=25.0
Q ss_pred cCCccCCCCHHHHHHHHHhccCCCceEEEEeeccccc
Q 014766 7 CGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDR 43 (419)
Q Consensus 7 ~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~ 43 (419)
+++.| .|++++.+..+=..-...|-|+| ||.+..
T Consensus 51 vnn~f-~p~~d~~~g~LY~~~~~dGfLyi--~Ys~~~ 84 (87)
T cd01612 51 INNSF-APSPDENVGNLYRCFGTNGELIV--SYCKTV 84 (87)
T ss_pred ECCcc-CCCchhHHHHHHHhcCCCCEEEE--EEeCcc
Confidence 46767 58888888888544467898887 887654
No 54
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=28.30 E-value=75 Score=30.22 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=26.3
Q ss_pred eccCCccCC------C--CHHHHHHHHHhccC-CCceEEEEeecc
Q 014766 5 AICGDVFAS------P--PVDSILAGIHAVTG-PMGCLLIVTNYT 40 (419)
Q Consensus 5 av~G~vFaS------P--s~~~i~~ai~~v~~-~~Gvl~iv~NYt 40 (419)
.++||+|-. | ...++.+.++.+.. +..|.+|.+|+-
T Consensus 35 ii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD 79 (231)
T TIGR01854 35 YILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRD 79 (231)
T ss_pred EEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence 478999962 2 23567777777653 578999999996
No 55
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=26.96 E-value=44 Score=34.19 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=67.9
Q ss_pred HhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCC--CCCCCc------ccc------chhhhH
Q 014766 24 HAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPP--RGIAGR------RGL------AGTILV 89 (419)
Q Consensus 24 ~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~--~~~~gR------RGl------aG~v~v 89 (419)
.++.+..|-++-.|||.|||..==+| +---+.|.=..+++.-|--.+..+ .+.+-| +|- -..+|.
T Consensus 267 qa~KS~GGfvwAcKNYDGDVqSD~vA-Qg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~hqkG~eTSTN~IASIFA 345 (422)
T KOG1526|consen 267 QAMKSEGGFVWACKNYDGDVQSDIVA-QGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNSIASIFA 345 (422)
T ss_pred HHHhcCCceEEEeecCCCchhhhHHH-hcccchhhheeEEEcCCCCeeeeeccccchhHHHHHHhcCCCccCcchHHHHH
Confidence 34568899999999999999764333 223345666666666664443321 111111 010 011222
Q ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHhcc-cceeeecCccccCCCCCCCCcCCCee--EEeccccCCCCcccccCCCHH
Q 014766 90 NKIAGAAAAAGL--SLADVAAEAKRASEMV-GTMGVALSVCTLPGQVTSDRLGPGKM--ELGLGIHGEPGAAVADLQPVD 164 (419)
Q Consensus 90 ~KiaGA~A~~G~--~L~~v~~~a~~~~~~~-~tigval~~c~~Pg~~~~~~l~~~e~--E~G~GiHgEpG~~~~~~~~a~ 164 (419)
| .=.++.+|. .-+++..+++.+-..+ .|+ ..|.| .+-+-||| .+.|..+.+-.
T Consensus 346 W--tRgl~hR~kLD~n~~l~~F~~~LE~aci~tv------------------e~G~MTKDLal~i~g--~~~r~~y~~T~ 403 (422)
T KOG1526|consen 346 W--TRGLAHRAKLDNNEALAKFANALEKACIETV------------------ESGKMTKDLALCIHG--KVERSDYLNTE 403 (422)
T ss_pred H--HHHHHHhhccCCCHHHHHHHHHHHHHHHHHH------------------HhccchHhHHHHhcC--CccccccccHH
Confidence 1 123344443 3345555555443221 111 11212 24467899 77888888888
Q ss_pred HHHHHHHHHHH
Q 014766 165 VVVSHVLKQIL 175 (419)
Q Consensus 165 ~l~~~~l~~l~ 175 (419)
|.++.+-..|-
T Consensus 404 eFidav~~~L~ 414 (422)
T KOG1526|consen 404 EFIDAVASNLK 414 (422)
T ss_pred HHHHHHHHHHH
Confidence 87777666653
No 56
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=26.62 E-value=6.4e+02 Score=25.02 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc-------------ccceeeecCccccCC-CCCCCCcCCCe---eEEeccccC
Q 014766 89 VNKIAGAAAAAGLSLADVAAEAKRASEM-------------VGTMGVALSVCTLPG-QVTSDRLGPGK---MELGLGIHG 151 (419)
Q Consensus 89 v~KiaGA~A~~G~~L~~v~~~a~~~~~~-------------~~tigval~~c~~Pg-~~~~~~l~~~e---~E~G~GiHg 151 (419)
++|.+....+-|.++.|+.+++++.... -.++.+|+-.|..=| -...-.|.+|. +-+|.-++|
T Consensus 24 ~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~d~~vlk~GDiv~IDvg~~~dG 103 (255)
T COG0024 24 ALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDG 103 (255)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCCCCcccCCCCEEEEEEEEEECC
Confidence 3444555667899999999999998873 356666666665433 11345577653 345554444
Q ss_pred CCCc--ccccCC-----CHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeE
Q 014766 152 EPGA--AVADLQ-----PVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAV 224 (419)
Q Consensus 152 EpG~--~~~~~~-----~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t~~~El~~~~~~~~~~L~~~~gi~v 224 (419)
=-|= ....+. .+..|++.--+.|-. ..-..++|.+ +.-+.+.+.++.++. |+.|
T Consensus 104 ~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~---~I~~vkpG~~---------------l~~Ig~aIq~~~~~~-G~~v 164 (255)
T COG0024 104 YIGDTAITFVVGEVSDEDAKRLLEATKEALYA---GIEAVKPGAR---------------LGDIGRAIQEYAESR-GFSV 164 (255)
T ss_pred eeeeEEEEEECCCCChHHHHHHHHHHHHHHHH---HHHhccCCCC---------------HHHHHHHHHHHHHHc-CCEE
Confidence 4441 122333 122233322222211 0112345543 455666666666666 9999
Q ss_pred EEeeeec
Q 014766 225 ERVYTGS 231 (419)
Q Consensus 225 ~r~~~G~ 231 (419)
+|-|+|+
T Consensus 165 Vr~~~GH 171 (255)
T COG0024 165 VRNLTGH 171 (255)
T ss_pred eecccCC
Confidence 9999993
No 57
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=26.14 E-value=2.1e+02 Score=28.66 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=35.5
Q ss_pred ccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHH-HHHHHhcCCcEEEEEecc
Q 014766 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLA-AEQAKSEGYKVEIVIVGD 67 (419)
Q Consensus 10 vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A-~e~a~~~G~~v~~v~v~D 67 (419)
+|++.....+..++...-..+|..+++.| -.|+.. ...++..|.++..|-+.+
T Consensus 58 ~~t~~~t~al~~~~~~l~~~~~~vlv~~~-----~~~~~~~~~~a~~~g~~~~~v~~~~ 111 (363)
T TIGR02326 58 LLQGSGTFAVEAVIGSAVPKDGKLLVVIN-----GAYGARIVQIAEYLGIPHHVVDTGE 111 (363)
T ss_pred EEcCCCHHHHHHHHHhcCCCCCeEEEEeC-----ChhhHHHHHHHHHcCCceEEEeCCC
Confidence 47888888888888777666665555443 145553 455777899888876543
No 58
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.07 E-value=2.6e+02 Score=27.09 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=33.2
Q ss_pred eccCCccCCCC--HHH---HHHHHHhccC-C-CceEEEEeeccc-ccccHHHHHHHHHhcCCcE
Q 014766 5 AICGDVFASPP--VDS---ILAGIHAVTG-P-MGCLLIVTNYTG-DRLNFGLAAEQAKSEGYKV 60 (419)
Q Consensus 5 av~G~vFaSPs--~~~---i~~ai~~v~~-~-~Gvl~iv~NYtG-D~lnFg~A~e~a~~~G~~v 60 (419)
.++||+|=... ..+ +...++.+.. + -.|++|.+|+-. +++++ ..+..+..|+.|
T Consensus 44 li~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~~~~~~--~~~l~~~~~v~i 105 (253)
T TIGR00619 44 LVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSAQRLSA--AKKLLIELGVFV 105 (253)
T ss_pred EECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCChhhccc--chhHHHhCCeEE
Confidence 47899998754 322 2345544432 3 689999999963 45554 345566666543
No 59
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=26.01 E-value=63 Score=26.36 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=31.3
Q ss_pred cCCCCCCCCCeEEEE-EcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeee
Q 014766 179 TNYVPITRGNRVVLM-INGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (419)
Q Consensus 179 r~~~~~~~~~~v~~l-vN~lG~t~~~El~~~~~~~~~~L~~~~gi~v~r~~~G 230 (419)
++|+....+++++++ |.-.-|-|....-.+++.+.+.|+++.||.+..+++-
T Consensus 18 ~~ylg~~Rs~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~ 70 (82)
T PF14552_consen 18 PTYLGIDRSDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLGIRPEDVMIV 70 (82)
T ss_dssp TTTS--TS-TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH---GGGEEEE
T ss_pred CccCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 346666666666555 5554477777888999999999998779998887764
No 60
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=25.87 E-value=1.1e+02 Score=31.16 Aligned_cols=85 Identities=28% Similarity=0.418 Sum_probs=57.0
Q ss_pred eeecCccccCCCCCCCCcCCCeeEEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCC
Q 014766 121 GVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGAT 200 (419)
Q Consensus 121 gval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~l~~~~l~~l~~~~r~~~~~~~~~~v~~lvN~lG~t 200 (419)
-++|..|+.|+..+ ......+-||--+-.| ..++..|+..+++++ | ==+....|||+|
T Consensus 15 ~~~l~~~s~~~~~~--~~~~~~I~VgsK~~tE-----------~~IL~~m~~~lle~~--------~-~kv~~~~~lG~t 72 (300)
T COG1732 15 LLLLAACSLPGLGS--ASAAKTIVVGSKIFTE-----------QYILGNILKQLLEKN--------G-IKVEDKTGLGGT 72 (300)
T ss_pred HHHHHHhccccccc--cccCCCEEEecCCCcH-----------HHHHHHHHHHHHHhc--------C-CceeeccCCCch
Confidence 34677888887222 4456677777555554 467888999988752 1 125568999999
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccC
Q 014766 201 PVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLD 237 (419)
Q Consensus 201 ~~~El~~~~~~~~~~L~~~~gi~v~r~~~G~~~Tsl~ 237 (419)
+.. ++.|.+- .|.+.--|.|+-.+++.
T Consensus 73 ~v~---------~~Al~~G-~IDiYpEYTGt~~~~~l 99 (300)
T COG1732 73 AVV---------RNALKSG-DIDIYPEYTGTALFSFL 99 (300)
T ss_pred HHH---------HHHHHcC-CCCeEeeecchhhhhhc
Confidence 652 3344555 78888889998877654
No 61
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=24.66 E-value=6.6e+02 Score=27.39 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=75.1
Q ss_pred HHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEeccccc---CCCCCCCCCccc---cchh-------hhH
Q 014766 23 IHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA---LPPPRGIAGRRG---LAGT-------ILV 89 (419)
Q Consensus 23 i~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva---~~~~~~~~gRRG---laG~-------v~v 89 (419)
.+.+.++.|-+++.+||-||+|. .+++...-.-|.- -.+.+++|-. ..+..+.+-|.- ++|. -.+
T Consensus 325 ~~lvk~P~~FViv~~NlfGDIlS-Dl~A~l~GsLGl~-pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~I 402 (483)
T PLN03065 325 AYAVKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLM-TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 402 (483)
T ss_pred HHHHhCCCCcEEEeeccchhhhh-HHHHHhcCchhhc-ccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHH
Confidence 46778888999999999999997 5888777777754 4456777753 233333333311 2332 233
Q ss_pred HHHHHHHHHcCCC--HHHHHHHHHHHHhccc-ceeeecCccccCCCCCCCCcCCCeeEEeccccCCCCcccccCCCHHHH
Q 014766 90 NKIAGAAAAAGLS--LADVAAEAKRASEMVG-TMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVV 166 (419)
Q Consensus 90 ~KiaGA~A~~G~~--L~~v~~~a~~~~~~~~-tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~l 166 (419)
+=.+..+...|.. -+++.+.|+++-+.+. |+.- | .-+- .+|.=+||. ...+....+-.|+
T Consensus 403 lA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~--------G-~~T~-------DLg~~~~G~-~~~~~~~~~T~ef 465 (483)
T PLN03065 403 FAWTRGLEHRAKLDKNEELLDFVHKLESACIETVES--------G-KMTK-------DLAILIHGP-KVSREFYLNTEEF 465 (483)
T ss_pred HHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHc--------C-Cccc-------ccccccCCC-cccCCCCcCHHHH
Confidence 3444555555651 2344555555444322 2211 1 0011 244445662 2234556677888
Q ss_pred HHHHHHHHH
Q 014766 167 VSHVLKQIL 175 (419)
Q Consensus 167 ~~~~l~~l~ 175 (419)
.+.+.++|-
T Consensus 466 ~daV~~~L~ 474 (483)
T PLN03065 466 IDAVAQTLA 474 (483)
T ss_pred HHHHHHHHH
Confidence 888888874
No 62
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=24.57 E-value=1.5e+02 Score=29.27 Aligned_cols=108 Identities=21% Similarity=0.185 Sum_probs=61.8
Q ss_pred cCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCC-ccccchhhhH
Q 014766 11 FASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAG-RRGLAGTILV 89 (419)
Q Consensus 11 FaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~g-RRGlaG~v~v 89 (419)
|..|..++|+++++.. +..=++++.+|++ +. .+...+-|++|=.+-...|.+-. ++..| |.-+.|.+=.
T Consensus 205 ~~~p~~k~i~~~i~~~-g~~~~lH~cG~~~-~~------~~~l~~~~~d~~~~d~~~dl~~~--~~~~g~~~~i~G~id~ 274 (330)
T cd03465 205 FSLPYLKKVFDAIKAL-GGPVIHHNCGDTA-PI------LELMADLGADVFSIDVTVDLAEA--KKKVGDKACLMGNLDP 274 (330)
T ss_pred HhhHHHHHHHHHHHHc-CCceEEEECCCch-hH------HHHHHHhCCCeEeecccCCHHHH--HHHhCCceEEEeCcCh
Confidence 3467778888888764 3344666666665 11 33344446554332222344422 22344 5678888755
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcccc--eeeecC-ccccCCCC
Q 014766 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGT--MGVALS-VCTLPGQV 133 (419)
Q Consensus 90 ~KiaGA~A~~G~~L~~v~~~a~~~~~~~~t--igval~-~c~~Pg~~ 133 (419)
...+ ...+-+||.+..+++.+.+.. =|.-|+ .|.+|-..
T Consensus 275 ~~~l-----~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~~ 316 (330)
T cd03465 275 IDVL-----LNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPDT 316 (330)
T ss_pred HHhh-----cCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCC
Confidence 5221 134669999999999988765 344443 37777543
No 63
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=24.23 E-value=1.3e+02 Score=28.36 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEE
Q 014766 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIV 63 (419)
Q Consensus 14 Ps~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v 63 (419)
+....++++++.-.-...|.++|.|-..- -+.+.|++.||++..+
T Consensus 13 s~~~~ll~~~~~~~~~~~I~~vvs~~~~~-----~~~~~a~~~gIp~~~~ 57 (200)
T PRK05647 13 SNLQAIIDACAAGQLPAEIVAVISDRPDA-----YGLERAEAAGIPTFVL 57 (200)
T ss_pred hhHHHHHHHHHcCCCCcEEEEEEecCccc-----hHHHHHHHcCCCEEEE
Confidence 66677777765544457888888887632 2688899999998654
No 64
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=24.14 E-value=1.3e+02 Score=28.25 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=32.3
Q ss_pred ccCC---CCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEE
Q 014766 10 VFAS---PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEI 62 (419)
Q Consensus 10 vFaS---Ps~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~ 62 (419)
||+| .+...++++++.=.-..++.+||.|... .-+.++|++.||++..
T Consensus 5 il~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~-----~~~~~~A~~~gip~~~ 55 (190)
T TIGR00639 5 VLISGNGSNLQAIIDACKEGKIPASVVLVISNKPD-----AYGLERAAQAGIPTFV 55 (190)
T ss_pred EEEcCCChhHHHHHHHHHcCCCCceEEEEEECCcc-----chHHHHHHHcCCCEEE
Confidence 4555 4455566666543334589999999863 2447889999999765
No 65
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=24.02 E-value=1.5e+02 Score=29.03 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=34.9
Q ss_pred eccCCccC--CC-CHHHHHHHHHhccCCCceEEEEeeccccc--ccHHHHHHHHHhcCCc
Q 014766 5 AICGDVFA--SP-PVDSILAGIHAVTGPMGCLLIVTNYTGDR--LNFGLAAEQAKSEGYK 59 (419)
Q Consensus 5 av~G~vFa--SP-s~~~i~~ai~~v~~~~Gvl~iv~NYtGD~--lnFg~A~e~a~~~G~~ 59 (419)
.++||++. +| ..+++.+.++......+|.+|.+|+--.. -+...-.+..+..|+.
T Consensus 85 li~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~ 144 (271)
T PRK11340 85 LLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT 144 (271)
T ss_pred EEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCcE
Confidence 46899987 33 34566677777776678999999995221 1122234555667764
No 66
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=23.85 E-value=78 Score=34.85 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=27.9
Q ss_pred ceeccCCccCCCC---HHHHHHHHHhcc-CCCceEEEEeeccc
Q 014766 3 TAAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVTNYTG 41 (419)
Q Consensus 3 ~aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~NYtG 41 (419)
+.+..||||-|-- -.|.-+|++.+. .+.|||+.. |..|
T Consensus 261 SeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYL-rqEG 302 (555)
T PRK09319 261 SECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYL-RQEG 302 (555)
T ss_pred ccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEe-CCCC
Confidence 3567899998763 478989999986 556887755 6554
No 67
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.11 E-value=55 Score=32.09 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=46.8
Q ss_pred HHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHh----------cCCcEEE--EEecccccCCC
Q 014766 16 VDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKS----------EGYKVEI--VIVGDDCALPP 73 (419)
Q Consensus 16 ~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~----------~G~~v~~--v~v~DDva~~~ 73 (419)
++-|.+||+.+...++..+|+..=.|=.+|=..|.|.|+. |||+=++ ..|++.|++++
T Consensus 64 ~epi~~Al~~~~~~~~~~vi~lsP~G~~f~Q~~a~eLa~~~~lv~iCGrYEGiDeRvi~~~vdeEiSIGD 133 (240)
T COG0336 64 PEPLFDALDSVKAAKKAKVILLSPQGKPFTQARARELAKEEHLVLICGRYEGIDERVIELYVDEEISIGD 133 (240)
T ss_pred cHHHHHHHHHHHhccCCeEEEECCCCCccCHHHHHHHhcCCCEEEEeccccchhHHHHhhccceEEeecc
Confidence 5668899999988778888999999999999999999987 4655333 36777888764
No 68
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=23.10 E-value=76 Score=25.42 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=23.2
Q ss_pred cCCC-ceEEEEeecccccccHHHHHHHHHhcCCc
Q 014766 27 TGPM-GCLLIVTNYTGDRLNFGLAAEQAKSEGYK 59 (419)
Q Consensus 27 ~~~~-Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~ 59 (419)
.+-+ --+++|..|--|+ |.|+|++.||+
T Consensus 42 ~grk~~r~ivVtp~id~~-----a~~~A~~LGIe 70 (70)
T PF07788_consen 42 HGRKVDRLIVVTPYIDDR-----AKEMAEELGIE 70 (70)
T ss_pred HCCCcceEEEEEeecCHH-----HHHHHHHhCCC
Confidence 3444 5789999999999 99999999984
No 69
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=22.39 E-value=1.9e+02 Score=26.64 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=35.2
Q ss_pred eccCCccCCCCHH--HHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCC
Q 014766 5 AICGDVFASPPVD--SILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGY 58 (419)
Q Consensus 5 av~G~vFaSPs~~--~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~ 58 (419)
.++||+|...... .+.+.++......++.++.+|+-=..-+...-.+..+..|+
T Consensus 37 l~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~~~~~~~l~~~~v 92 (223)
T cd07385 37 VLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSGDEENWIEALESAGI 92 (223)
T ss_pred EEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccCchHHHHHHHHHcCC
Confidence 4689999876554 56666777766788999999985444333322445555554
No 70
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=22.19 E-value=90 Score=27.28 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHhccCCCceEEEEeecc
Q 014766 13 SPPVDSILAGIHAVTGPMGCLLIVTNYT 40 (419)
Q Consensus 13 SPs~~~i~~ai~~v~~~~Gvl~iv~NYt 40 (419)
+|||+|+..-+-..-+-+|-|++ ||.
T Consensus 85 APsPDq~v~~Ly~cf~~d~~Lvl--~Yc 110 (116)
T KOG3439|consen 85 APSPDQIVGNLYECFGTDGKLVL--NYC 110 (116)
T ss_pred CCCchhHHHHHHHhcCCCCEEEE--EEe
Confidence 69999999999888888887665 774
No 71
>PRK07198 hypothetical protein; Validated
Probab=22.04 E-value=1.3e+02 Score=31.87 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=27.7
Q ss_pred ceeccCCccCCCCH---HH----HHHHHHhccC-CCceEEEEeeccc
Q 014766 3 TAAICGDVFASPPV---DS----ILAGIHAVTG-PMGCLLIVTNYTG 41 (419)
Q Consensus 3 ~aav~G~vFaSPs~---~~----i~~ai~~v~~-~~Gvl~iv~NYtG 41 (419)
+.+..||||-|-.- .| |-+|++.+.. +.|||+.+.+ .|
T Consensus 246 SeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLrQ-EG 291 (418)
T PRK07198 246 DECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNRK-EG 291 (418)
T ss_pred ccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeCC-CC
Confidence 35678999999854 44 5567777765 8899988854 55
No 72
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=21.70 E-value=54 Score=30.15 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=34.4
Q ss_pred CCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecc
Q 014766 29 PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGD 67 (419)
Q Consensus 29 ~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~D 67 (419)
+.-|++|+..+-|..=+.-++.|.++.+|+++.-|+++.
T Consensus 129 ~a~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~ 167 (199)
T PF13500_consen 129 GAPVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNR 167 (199)
T ss_dssp T-EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 556999999999999889999999999999999999998
No 73
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=21.31 E-value=1.1e+02 Score=26.94 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=28.0
Q ss_pred CCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEec
Q 014766 29 PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVG 66 (419)
Q Consensus 29 ~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~ 66 (419)
+.+||+|+..+-|..-+=-++.+.++..|+++.-++++
T Consensus 129 ~~~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 129 QLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 55688888777777655667777788888888777763
No 74
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.72 E-value=3.3e+02 Score=28.42 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=71.0
Q ss_pred cCCccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHh--cCCcEEEEEecccccCCCCCCCCCccccc
Q 014766 7 CGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKS--EGYKVEIVIVGDDCALPPPRGIAGRRGLA 84 (419)
Q Consensus 7 ~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~--~G~~v~~v~v~DDva~~~~~~~~gRRGla 84 (419)
.|+=+.=|.--++.+|.+.. +||=+|-..=.|=.||-.++.|.+++ +-+++.+ | |..|
T Consensus 168 qGEP~lYP~l~~lVqalk~~---~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv-----~-aLDp----------- 227 (414)
T COG2100 168 QGEPLLYPHLVDLVQALKEH---KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSV-----D-ALDP----------- 227 (414)
T ss_pred CCCCccchhHHHHHHHHhcC---CCceEEEEeeCceeccHHHHHHHHHhCCceEEeec-----c-cCCH-----------
Confidence 47778888888888888776 77888888888999999998887765 2233221 1 1111
Q ss_pred hhhhHHHHHHHHH-HcCCCHHHHHHHHHHHHhcccceeeecCccccCC
Q 014766 85 GTILVNKIAGAAA-AAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG 131 (419)
Q Consensus 85 G~v~v~KiaGA~A-~~G~~L~~v~~~a~~~~~~~~tigval~~c~~Pg 131 (419)
|.|=.++ .+-++++.|.++|+.+.+ ..|-|-++|.-+||
T Consensus 228 ------k~Ak~L~G~~dYdv~kvle~aE~i~~--a~idvlIaPv~lPG 267 (414)
T COG2100 228 ------KLAKMLAGRKDYDVKKVLEVAEYIAN--AGIDVLIAPVWLPG 267 (414)
T ss_pred ------HHHHHhcCccccCHHHHHHHHHHHHh--CCCCEEEeeeecCC
Confidence 1111222 256899999999999998 89999999999999
No 75
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=20.71 E-value=1.2e+02 Score=30.75 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=62.3
Q ss_pred cCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCC-CCccccchhhhH
Q 014766 11 FASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGI-AGRRGLAGTILV 89 (419)
Q Consensus 11 FaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~-~gRRGlaG~v~v 89 (419)
|.-|..++|+++++....+.=+|++.+|.+.. .+..+.-|+ +.+-++.-+.....+.. .+++-+.|.+=-
T Consensus 221 f~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~-------~~~~~~~~~--~~is~d~~~dl~~~k~~~g~~~~i~Gni~p 291 (346)
T PRK00115 221 FVLPYMKRIVAELKREHPDVPVILFGKGAGEL-------LEAMAETGA--DVVGLDWTVDLAEARRRVGDKKALQGNLDP 291 (346)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHH-------HHHHHhcCC--CEEeeCCCCCHHHHHHHcCCCeEEEeCCCh
Confidence 45788999999998742134477777876532 333344455 44444443433222222 345889998743
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcccceeeec-CccccCCC
Q 014766 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVAL-SVCTLPGQ 132 (419)
Q Consensus 90 ~KiaGA~A~~G~~L~~v~~~a~~~~~~~~tigval-~~c~~Pg~ 132 (419)
. +- .| +-++|.+-++++.+....=|.-| ++|.+|-.
T Consensus 292 ~-----ll-~g-t~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~ 328 (346)
T PRK00115 292 A-----VL-LA-PPEAIEEEVRAILDGGGGPGHIFNLGHGILPE 328 (346)
T ss_pred h-----Hh-cC-CHHHHHHHHHHHHHHhCCCCeeeecCCcCCCC
Confidence 1 11 23 47999999999998874333333 34666643
No 76
>PHA02097 hypothetical protein
Probab=20.26 E-value=50 Score=24.95 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=18.6
Q ss_pred hccCCCceEEEEeecccccccHHH
Q 014766 25 AVTGPMGCLLIVTNYTGDRLNFGL 48 (419)
Q Consensus 25 ~v~~~~Gvl~iv~NYtGD~lnFg~ 48 (419)
+.+.+.|||.=| |||=|+-||.|
T Consensus 15 amntp~gv~iri-~~tf~~~~f~~ 37 (59)
T PHA02097 15 AMNTPGGVIIRI-AHTFDVSNFKI 37 (59)
T ss_pred EeeCCCcEEEEE-EeEEeeccceE
Confidence 346778888776 99999999976
No 77
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=20.23 E-value=2.1e+02 Score=24.67 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=28.5
Q ss_pred HHHHHhccC-CCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEec
Q 014766 20 LAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVG 66 (419)
Q Consensus 20 ~~ai~~v~~-~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~ 66 (419)
+++++.+.. .-.+++|| |||. .|-=+++++|+.|.+|..+-..
T Consensus 89 ~d~~~~~~~~~~d~ivLv---SgD~-Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 89 IDALELAYKRRIDTIVLV---SGDS-DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHHhhhcCCCEEEEE---ECCc-cHHHHHHHHHHcCCEEEEEccC
Confidence 344544443 33566666 5566 7888888888888888876554
No 78
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.21 E-value=2.8e+02 Score=22.94 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=38.1
Q ss_pred ccCCCCHHHHHHHHHhccCCCceEEEEeecccccccHHHHHHHHHhcCCcEEEEEeccccc
Q 014766 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA 70 (419)
Q Consensus 10 vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva 70 (419)
+...+.......-.+.+ +.+.++|+-.++|.-...--++++|++.|++ +|.++++-.
T Consensus 42 ~~~~~~~~~~~~~~~~~--~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~--iv~iT~~~~ 98 (139)
T cd05013 42 VVLLSDPHLQLMSAANL--TPGDVVIAISFSGETKETVEAAEIAKERGAK--VIAITDSAN 98 (139)
T ss_pred eEEecCHHHHHHHHHcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCe--EEEEcCCCC
Confidence 33445555555555544 3456777779999988877788999998854 566666543
No 79
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=20.12 E-value=2.4e+02 Score=28.47 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHhccCC--CceEEE---EeecccccccHHHHHHHHHhcCCcEEEEEeccccc
Q 014766 13 SPPVDSILAGIHAVTGP--MGCLLI---VTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA 70 (419)
Q Consensus 13 SPs~~~i~~ai~~v~~~--~Gvl~i---v~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva 70 (419)
.++++++.++++..... +-.+++ +-|.||++....--++.|++.| .++|-||+-
T Consensus 151 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~----~~li~De~~ 209 (393)
T TIGR01822 151 NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYD----ALVMVDECH 209 (393)
T ss_pred CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcC----CEEEEECCc
Confidence 46778888888764322 444555 3489999999877788888776 467888884
Done!