Query 014768
Match_columns 419
No_of_seqs 267 out of 2885
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:20:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00996 GDI: GDP dissociation 100.0 4.1E-62 8.8E-67 458.2 34.7 416 1-417 1-417 (438)
2 PTZ00363 rab-GDP dissociation 100.0 3.4E-60 7.3E-65 452.2 44.0 414 1-415 1-416 (443)
3 KOG1439 RAB proteins geranylge 100.0 5.5E-56 1.2E-60 395.2 31.3 416 1-417 1-417 (440)
4 COG5044 MRS6 RAB proteins gera 100.0 1.8E-45 4E-50 324.1 27.4 407 1-416 1-413 (434)
5 TIGR02734 crtI_fam phytoene de 100.0 2E-37 4.4E-42 307.0 24.5 369 7-417 1-431 (502)
6 TIGR02733 desat_CrtD C-3',4' d 100.0 1.2E-36 2.7E-41 300.5 23.4 372 5-417 2-432 (492)
7 TIGR02730 carot_isom carotene 100.0 3.8E-36 8.2E-41 296.5 23.1 375 5-416 1-431 (493)
8 COG1233 Phytoene dehydrogenase 100.0 8.2E-37 1.8E-41 298.7 15.9 369 3-416 2-421 (487)
9 KOG4405 GDP dissociation inhib 100.0 8.2E-35 1.8E-39 259.2 17.2 346 3-356 7-415 (547)
10 KOG4254 Phytoene desaturase [C 100.0 2.8E-28 6E-33 220.9 15.0 188 221-417 253-483 (561)
11 PRK07233 hypothetical protein; 99.9 5E-24 1.1E-28 208.2 28.5 250 6-287 1-252 (434)
12 COG1232 HemY Protoporphyrinoge 99.9 4.5E-24 9.8E-29 201.3 23.1 311 6-359 2-348 (444)
13 TIGR00562 proto_IX_ox protopor 99.9 1.3E-21 2.7E-26 192.6 27.2 247 5-287 3-277 (462)
14 PRK11883 protoporphyrinogen ox 99.9 9.1E-22 2E-26 193.2 25.3 314 6-357 2-353 (451)
15 PRK12416 protoporphyrinogen ox 99.9 2.3E-22 4.9E-27 197.6 19.6 246 6-286 3-277 (463)
16 PRK07208 hypothetical protein; 99.9 7.1E-22 1.5E-26 195.0 22.1 252 1-287 1-278 (479)
17 PLN02576 protoporphyrinogen ox 99.9 1.1E-21 2.4E-26 194.5 22.0 250 3-286 11-294 (496)
18 PLN02612 phytoene desaturase 99.9 3.9E-20 8.4E-25 184.4 24.6 254 4-286 93-363 (567)
19 TIGR02732 zeta_caro_desat caro 99.9 6.4E-20 1.4E-24 179.4 23.7 257 6-287 1-282 (474)
20 TIGR02731 phytoene_desat phyto 99.9 9.3E-20 2E-24 178.6 23.8 254 6-287 1-274 (453)
21 PLN02487 zeta-carotene desatur 99.8 1.7E-19 3.7E-24 177.7 22.1 259 5-288 76-359 (569)
22 PRK13977 myosin-cross-reactive 99.8 5.8E-19 1.2E-23 170.7 19.6 240 4-286 22-290 (576)
23 PLN02268 probable polyamine ox 99.8 7.9E-18 1.7E-22 164.2 13.6 237 5-286 1-249 (435)
24 PLN02568 polyamine oxidase 99.7 1.6E-16 3.5E-21 156.7 18.6 77 1-97 2-85 (539)
25 TIGR03467 HpnE squalene-associ 99.7 7.8E-16 1.7E-20 149.7 21.2 238 18-287 1-252 (419)
26 PLN02529 lysine-specific histo 99.7 6.4E-16 1.4E-20 155.6 19.3 234 4-286 160-404 (738)
27 PLN02328 lysine-specific histo 99.7 8E-16 1.7E-20 155.6 19.2 237 4-287 238-485 (808)
28 COG2907 Predicted NAD/FAD-bind 99.7 2.6E-15 5.5E-20 132.9 18.9 247 4-285 8-269 (447)
29 PLN02676 polyamine oxidase 99.7 1.8E-15 3.8E-20 148.3 18.0 240 3-286 25-283 (487)
30 COG1231 Monoamine oxidase [Ami 99.7 4.9E-16 1.1E-20 143.7 11.0 45 3-47 6-50 (450)
31 PLN03000 amine oxidase 99.6 9.5E-15 2.1E-19 147.8 18.7 237 4-287 184-429 (881)
32 KOG0029 Amine oxidase [Seconda 99.6 2E-15 4.2E-20 146.5 11.9 76 3-97 14-91 (501)
33 KOG1276 Protoporphyrinogen oxi 99.6 2.6E-13 5.5E-18 123.8 20.9 233 4-264 11-281 (491)
34 COG3349 Uncharacterized conser 99.6 1.7E-14 3.6E-19 136.1 10.1 245 6-278 2-264 (485)
35 COG2081 Predicted flavoprotein 99.5 8.8E-14 1.9E-18 126.8 13.4 64 221-286 99-164 (408)
36 PF01593 Amino_oxidase: Flavin 99.5 2.9E-14 6.4E-19 139.2 9.4 70 14-101 1-71 (450)
37 PF13450 NAD_binding_8: NAD(P) 99.5 2.1E-14 4.5E-19 100.4 5.0 55 9-83 1-55 (68)
38 PF01266 DAO: FAD dependent ox 99.5 5.3E-13 1.1E-17 126.8 13.1 67 222-289 134-203 (358)
39 PF03486 HI0933_like: HI0933-l 99.5 3E-13 6.5E-18 128.7 11.2 63 223-286 99-163 (409)
40 PLN02976 amine oxidase 99.5 2.2E-12 4.8E-17 134.7 17.9 60 4-82 693-752 (1713)
41 KOG0685 Flavin-containing amin 99.5 7.2E-13 1.6E-17 122.8 12.6 72 3-94 20-94 (498)
42 TIGR00031 UDP-GALP_mutase UDP- 99.5 1E-12 2.2E-17 123.4 13.8 94 5-121 2-96 (377)
43 COG0579 Predicted dehydrogenas 99.4 6.1E-12 1.3E-16 118.6 16.5 65 223-288 141-210 (429)
44 PRK11728 hydroxyglutarate oxid 99.4 5.2E-12 1.1E-16 121.6 13.1 64 224-289 138-204 (393)
45 TIGR01377 soxA_mon sarcosine o 99.3 4.1E-11 8.8E-16 115.0 16.1 64 224-289 134-200 (380)
46 PRK08274 tricarballylate dehyd 99.3 1.1E-11 2.5E-16 121.9 12.2 59 227-286 126-189 (466)
47 PRK00711 D-amino acid dehydrog 99.3 1.9E-11 4.2E-16 118.7 13.2 66 223-289 189-257 (416)
48 PRK11101 glpA sn-glycerol-3-ph 99.3 4.5E-11 9.8E-16 119.3 15.3 66 223-290 138-212 (546)
49 PRK11259 solA N-methyltryptoph 99.3 7.3E-11 1.6E-15 113.1 15.8 65 223-289 137-204 (376)
50 TIGR03329 Phn_aa_oxid putative 99.3 1.1E-10 2.5E-15 114.4 16.0 63 223-288 171-236 (460)
51 PRK12409 D-amino acid dehydrog 99.3 8.9E-11 1.9E-15 113.8 14.3 66 223-289 185-258 (410)
52 COG0578 GlpA Glycerol-3-phosph 99.3 6.9E-11 1.5E-15 113.8 13.0 67 223-291 153-227 (532)
53 PTZ00383 malate:quinone oxidor 99.2 2E-10 4.3E-15 112.3 14.7 66 223-289 198-273 (497)
54 PF06100 Strep_67kDa_ant: Stre 99.2 4.8E-10 1E-14 105.9 16.4 240 4-285 2-270 (500)
55 COG0562 Glf UDP-galactopyranos 99.2 4.3E-11 9.2E-16 105.6 7.6 119 4-146 1-122 (374)
56 PRK01747 mnmC bifunctional tRN 99.2 2.5E-10 5.5E-15 116.9 14.4 65 222-289 395-463 (662)
57 PRK06481 fumarate reductase fl 99.2 7.6E-10 1.7E-14 109.6 16.1 54 232-286 190-248 (506)
58 COG0665 DadA Glycine/D-amino a 99.2 1E-09 2.2E-14 105.6 16.6 65 223-289 144-212 (387)
59 TIGR01373 soxB sarcosine oxida 99.2 9.4E-10 2E-14 106.5 16.0 57 232-288 183-239 (407)
60 PF00890 FAD_binding_2: FAD bi 99.1 3.8E-10 8.2E-15 109.7 12.5 56 230-286 139-200 (417)
61 KOG2820 FAD-dependent oxidored 99.1 5.6E-10 1.2E-14 99.2 12.2 58 232-289 153-212 (399)
62 PRK10157 putative oxidoreducta 99.1 6.4E-10 1.4E-14 108.0 13.9 54 234-288 110-163 (428)
63 PRK12845 3-ketosteroid-delta-1 99.1 2.7E-09 5.9E-14 106.6 18.3 41 3-44 15-55 (564)
64 PRK12266 glpD glycerol-3-phosp 99.1 2.6E-10 5.7E-15 112.9 11.1 44 1-44 3-46 (508)
65 PRK13369 glycerol-3-phosphate 99.1 2.6E-10 5.5E-15 113.0 10.9 57 232-290 155-216 (502)
66 TIGR03364 HpnW_proposed FAD de 99.1 8.1E-10 1.8E-14 105.4 13.9 61 223-289 133-197 (365)
67 TIGR01813 flavo_cyto_c flavocy 99.1 1.9E-09 4.1E-14 105.5 15.8 55 232-286 130-189 (439)
68 PRK07121 hypothetical protein; 99.1 3.4E-09 7.3E-14 105.0 17.7 56 231-286 176-236 (492)
69 PF00732 GMC_oxred_N: GMC oxid 99.1 5.6E-10 1.2E-14 103.3 11.1 39 5-43 1-40 (296)
70 PRK10015 oxidoreductase; Provi 99.1 1.4E-09 3.1E-14 105.4 14.2 53 234-287 110-162 (429)
71 PRK13339 malate:quinone oxidor 99.1 1.5E-09 3.2E-14 105.9 13.5 67 223-289 172-247 (497)
72 TIGR01320 mal_quin_oxido malat 99.1 2.5E-09 5.4E-14 104.9 14.5 67 223-289 166-240 (483)
73 PLN02464 glycerol-3-phosphate 99.1 1.3E-09 2.9E-14 110.2 12.9 60 231-290 231-297 (627)
74 COG3380 Predicted NAD/FAD-depe 99.1 1.5E-10 3.2E-15 99.8 5.0 61 6-86 3-63 (331)
75 PRK05257 malate:quinone oxidor 99.1 3.8E-09 8.2E-14 103.7 15.3 67 223-289 171-246 (494)
76 PRK06175 L-aspartate oxidase; 99.1 1E-09 2.2E-14 106.5 10.9 42 1-43 1-42 (433)
77 PRK06134 putative FAD-binding 99.1 1.1E-08 2.4E-13 103.0 18.7 56 232-288 217-277 (581)
78 PRK12839 hypothetical protein; 99.0 1.4E-08 3.1E-13 101.7 18.6 43 2-44 6-48 (572)
79 PRK12842 putative succinate de 99.0 1.4E-08 3.1E-13 102.2 17.4 42 3-44 8-49 (574)
80 PRK12843 putative FAD-binding 99.0 1.4E-08 3.1E-13 102.2 17.0 43 3-45 15-57 (578)
81 PRK12844 3-ketosteroid-delta-1 99.0 1.8E-08 3.9E-13 100.9 17.0 42 3-44 5-46 (557)
82 PRK12837 3-ketosteroid-delta-1 99.0 1.2E-08 2.6E-13 101.3 15.4 41 3-44 6-46 (513)
83 TIGR00275 flavoprotein, HI0933 99.0 4E-09 8.7E-14 101.4 11.6 60 226-287 98-158 (400)
84 COG1635 THI4 Ribulose 1,5-bisp 99.0 3.8E-10 8.3E-15 94.4 3.5 42 4-45 30-71 (262)
85 PRK12835 3-ketosteroid-delta-1 99.0 2.6E-08 5.6E-13 100.2 17.0 42 2-43 9-50 (584)
86 PRK02106 choline dehydrogenase 99.0 1.7E-08 3.7E-13 101.6 15.7 38 1-38 2-40 (560)
87 PRK08773 2-octaprenyl-3-methyl 98.9 1.1E-08 2.5E-13 98.5 13.5 56 232-289 113-169 (392)
88 PF01946 Thi4: Thi4 family; PD 98.9 3.6E-10 7.8E-15 95.2 2.6 42 4-45 17-58 (230)
89 PTZ00139 Succinate dehydrogena 98.9 1.4E-08 3E-13 102.8 13.5 54 232-285 166-225 (617)
90 PRK07573 sdhA succinate dehydr 98.9 1.3E-08 2.8E-13 103.2 13.1 39 4-42 35-73 (640)
91 PRK08958 sdhA succinate dehydr 98.9 8.9E-09 1.9E-13 103.6 11.8 55 232-286 143-203 (588)
92 TIGR02485 CobZ_N-term precorri 98.9 6.9E-09 1.5E-13 101.2 10.4 61 226-286 117-180 (432)
93 TIGR01812 sdhA_frdA_Gneg succi 98.9 2.2E-08 4.7E-13 101.0 13.9 54 232-286 129-188 (566)
94 PRK06452 sdhA succinate dehydr 98.9 1.3E-08 2.9E-13 102.1 11.6 54 232-286 136-195 (566)
95 PRK06847 hypothetical protein; 98.9 1.7E-08 3.6E-13 96.7 11.8 55 233-289 108-163 (375)
96 PRK09078 sdhA succinate dehydr 98.9 7.5E-09 1.6E-13 104.4 9.3 55 232-286 149-209 (598)
97 PRK07057 sdhA succinate dehydr 98.9 2.1E-08 4.6E-13 101.0 12.5 55 232-286 148-208 (591)
98 PRK07190 hypothetical protein; 98.9 3.7E-08 8.1E-13 97.0 13.6 39 1-39 1-40 (487)
99 PLN00128 Succinate dehydrogena 98.8 3.3E-08 7.1E-13 100.1 13.1 54 232-285 187-246 (635)
100 PRK07843 3-ketosteroid-delta-1 98.8 1.4E-07 3E-12 94.7 17.5 42 3-44 6-47 (557)
101 PRK06185 hypothetical protein; 98.8 4.7E-08 1E-12 94.7 13.7 37 2-38 4-40 (407)
102 TIGR01810 betA choline dehydro 98.8 1.1E-07 2.4E-12 95.2 16.4 56 232-288 193-254 (532)
103 PRK07804 L-aspartate oxidase; 98.8 5.7E-08 1.2E-12 97.1 14.0 41 3-43 15-55 (541)
104 TIGR00551 nadB L-aspartate oxi 98.8 9.5E-08 2.1E-12 94.5 14.9 55 232-287 128-187 (488)
105 PRK05945 sdhA succinate dehydr 98.8 5.1E-08 1.1E-12 98.2 13.1 54 232-286 135-194 (575)
106 PRK07333 2-octaprenyl-6-methox 98.8 4.4E-08 9.6E-13 94.8 10.5 55 232-288 111-166 (403)
107 PRK07512 L-aspartate oxidase; 98.8 1E-07 2.3E-12 94.6 13.3 53 232-285 136-193 (513)
108 PRK06069 sdhA succinate dehydr 98.8 3.8E-08 8.3E-13 99.2 10.2 43 1-43 1-47 (577)
109 PRK08275 putative oxidoreducta 98.8 1E-07 2.2E-12 95.7 13.1 55 232-286 137-197 (554)
110 COG0644 FixC Dehydrogenases (f 98.7 6.5E-09 1.4E-13 100.1 4.3 43 3-45 2-44 (396)
111 PRK07395 L-aspartate oxidase; 98.7 1.4E-07 3.1E-12 94.2 13.7 54 232-285 134-193 (553)
112 PRK06263 sdhA succinate dehydr 98.7 9.5E-08 2.1E-12 95.7 12.3 54 232-286 134-194 (543)
113 PRK08205 sdhA succinate dehydr 98.7 1.6E-07 3.6E-12 94.6 14.0 55 232-286 140-203 (583)
114 TIGR00292 thiazole biosynthesi 98.7 8.1E-09 1.8E-13 92.4 3.8 41 4-44 21-61 (254)
115 PRK07803 sdhA succinate dehydr 98.7 2.1E-07 4.4E-12 94.5 14.2 39 4-42 8-46 (626)
116 PRK04176 ribulose-1,5-biphosph 98.7 1.1E-08 2.4E-13 91.8 4.0 41 4-44 25-65 (257)
117 KOG2844 Dimethylglycine dehydr 98.7 1.3E-07 2.8E-12 91.4 11.2 69 223-292 175-246 (856)
118 PRK08071 L-aspartate oxidase; 98.7 2.8E-07 6E-12 91.5 13.8 53 232-286 130-187 (510)
119 PRK08401 L-aspartate oxidase; 98.7 6.1E-07 1.3E-11 88.2 16.1 55 232-288 120-174 (466)
120 COG2303 BetA Choline dehydroge 98.7 3.1E-07 6.7E-12 91.5 13.8 37 1-37 4-40 (542)
121 PTZ00306 NADH-dependent fumara 98.7 1.9E-07 4E-12 101.1 13.0 42 3-44 408-449 (1167)
122 PRK06854 adenylylsulfate reduc 98.7 3.7E-07 7.9E-12 92.4 14.3 54 232-286 132-192 (608)
123 PRK05329 anaerobic glycerol-3- 98.6 8.2E-07 1.8E-11 85.2 14.8 55 233-288 260-317 (422)
124 PLN02172 flavin-containing mon 98.6 2.2E-08 4.7E-13 97.6 4.0 44 2-45 8-51 (461)
125 TIGR01811 sdhA_Bsu succinate d 98.6 1.7E-07 3.7E-12 94.6 10.2 36 7-42 1-36 (603)
126 PRK06467 dihydrolipoamide dehy 98.6 2.8E-08 6.1E-13 97.8 4.1 44 1-44 1-44 (471)
127 PRK05249 soluble pyridine nucl 98.6 2.9E-08 6.4E-13 97.7 4.1 44 2-45 3-46 (461)
128 PRK06116 glutathione reductase 98.6 2.6E-08 5.7E-13 97.7 3.5 43 1-44 1-43 (450)
129 TIGR01176 fum_red_Fp fumarate 98.6 1.1E-06 2.4E-11 88.4 14.9 53 232-285 132-191 (580)
130 PRK06370 mercuric reductase; V 98.6 3.4E-08 7.4E-13 97.2 4.1 43 1-44 2-44 (463)
131 PF06039 Mqo: Malate:quinone o 98.6 7.9E-07 1.7E-11 83.6 12.3 61 225-286 170-241 (488)
132 TIGR03378 glycerol3P_GlpB glyc 98.6 3.5E-06 7.6E-11 80.0 16.7 56 232-288 263-321 (419)
133 PRK06115 dihydrolipoamide dehy 98.6 3.8E-08 8.2E-13 96.8 3.6 43 2-44 1-43 (466)
134 PF01134 GIDA: Glucose inhibit 98.6 2E-07 4.2E-12 87.4 8.0 52 234-287 97-150 (392)
135 PRK05976 dihydrolipoamide dehy 98.5 5.2E-08 1.1E-12 96.1 4.0 44 1-45 1-44 (472)
136 PRK07818 dihydrolipoamide dehy 98.5 5.9E-08 1.3E-12 95.6 4.1 44 1-45 1-44 (466)
137 PF04820 Trp_halogenase: Trypt 98.5 7.2E-08 1.6E-12 94.0 4.5 54 232-286 154-208 (454)
138 PRK07251 pyridine nucleotide-d 98.5 6.4E-08 1.4E-12 94.6 3.7 42 3-44 2-44 (438)
139 PRK08010 pyridine nucleotide-d 98.5 6.6E-08 1.4E-12 94.6 3.7 43 2-44 1-44 (441)
140 PF01494 FAD_binding_3: FAD bi 98.5 6.5E-08 1.4E-12 91.7 3.4 37 4-40 1-37 (356)
141 PRK07494 2-octaprenyl-6-methox 98.5 8.8E-08 1.9E-12 92.2 4.2 38 2-39 5-42 (388)
142 PRK09126 hypothetical protein; 98.5 8.3E-08 1.8E-12 92.5 3.8 38 1-39 1-38 (392)
143 PRK08163 salicylate hydroxylas 98.5 8.5E-08 1.8E-12 92.6 3.9 40 1-40 1-40 (396)
144 PRK07364 2-octaprenyl-6-methox 98.5 1E-07 2.3E-12 92.6 4.1 38 2-39 16-53 (415)
145 PRK12834 putative FAD-binding 98.5 1E-07 2.3E-12 95.6 4.1 44 1-44 1-46 (549)
146 PF12831 FAD_oxidored: FAD dep 98.5 9.4E-08 2E-12 92.8 3.5 40 6-45 1-40 (428)
147 PRK08850 2-octaprenyl-6-methox 98.5 1E-07 2.2E-12 92.3 3.6 36 1-36 1-36 (405)
148 COG2072 TrkA Predicted flavopr 98.5 1.4E-07 3E-12 91.6 4.5 46 2-47 6-52 (443)
149 TIGR01421 gluta_reduc_1 glutat 98.5 1E-07 2.2E-12 93.2 3.5 41 3-44 1-41 (450)
150 PRK06327 dihydrolipoamide dehy 98.5 1.3E-07 2.8E-12 93.3 4.3 45 1-45 1-51 (475)
151 TIGR02032 GG-red-SF geranylger 98.5 1.3E-07 2.7E-12 87.4 3.9 37 5-41 1-37 (295)
152 PRK08013 oxidoreductase; Provi 98.4 1.3E-07 2.9E-12 91.3 4.0 38 1-39 1-38 (400)
153 TIGR03143 AhpF_homolog putativ 98.4 1.2E-07 2.6E-12 95.1 3.8 44 1-45 1-44 (555)
154 PLN02661 Putative thiazole syn 98.4 1.2E-07 2.5E-12 87.5 3.3 41 4-44 92-133 (357)
155 TIGR01424 gluta_reduc_2 glutat 98.4 1.2E-07 2.5E-12 92.9 3.5 40 4-44 2-41 (446)
156 PRK07045 putative monooxygenas 98.4 1.3E-07 2.9E-12 90.9 3.8 39 1-39 1-40 (388)
157 PRK06292 dihydrolipoamide dehy 98.4 1.5E-07 3.2E-12 92.7 3.9 41 3-44 2-42 (460)
158 COG1148 HdrA Heterodisulfide r 98.4 1.3E-07 2.7E-12 88.4 3.0 43 5-47 125-167 (622)
159 TIGR01350 lipoamide_DH dihydro 98.4 1.6E-07 3.4E-12 92.6 3.8 41 4-45 1-41 (461)
160 PRK06416 dihydrolipoamide dehy 98.4 1.6E-07 3.4E-12 92.6 3.8 42 3-45 3-44 (462)
161 PRK08849 2-octaprenyl-3-methyl 98.4 1.7E-07 3.8E-12 89.9 3.6 36 1-37 1-36 (384)
162 KOG1399 Flavin-containing mono 98.4 1.8E-07 4E-12 89.7 3.3 44 3-46 5-48 (448)
163 PRK05192 tRNA uridine 5-carbox 98.4 2.2E-07 4.8E-12 91.8 3.9 42 1-42 1-43 (618)
164 COG1249 Lpd Pyruvate/2-oxoglut 98.4 2.4E-07 5.2E-12 89.3 3.8 45 1-45 1-45 (454)
165 PRK14694 putative mercuric red 98.4 2.5E-07 5.4E-12 91.1 3.9 57 232-290 218-274 (468)
166 TIGR02028 ChlP geranylgeranyl 98.4 2.6E-07 5.7E-12 88.9 3.9 39 5-43 1-39 (398)
167 PLN02785 Protein HOTHEAD 98.4 6.3E-06 1.4E-10 82.8 13.7 35 3-38 54-88 (587)
168 PRK05714 2-octaprenyl-3-methyl 98.4 2.6E-07 5.6E-12 89.5 3.7 54 233-288 113-167 (405)
169 TIGR01988 Ubi-OHases Ubiquinon 98.4 2.6E-07 5.6E-12 88.8 3.7 55 232-288 106-162 (385)
170 PF13738 Pyr_redox_3: Pyridine 98.4 1.8E-07 4E-12 81.3 2.4 38 8-45 1-39 (203)
171 COG2509 Uncharacterized FAD-de 98.4 6.9E-06 1.5E-10 76.8 12.6 57 231-288 172-229 (486)
172 PLN00093 geranylgeranyl diphos 98.4 2.6E-07 5.7E-12 90.0 3.6 36 3-38 38-73 (450)
173 PRK07236 hypothetical protein; 98.4 2.9E-07 6.4E-12 88.5 3.8 36 3-38 5-40 (386)
174 TIGR03315 Se_ygfK putative sel 98.3 3E-07 6.5E-12 96.2 3.9 42 4-45 537-578 (1012)
175 COG4716 Myosin-crossreactive a 98.3 3.8E-06 8.1E-11 76.2 10.3 221 5-261 23-256 (587)
176 TIGR01292 TRX_reduct thioredox 98.3 2.9E-07 6.2E-12 85.3 3.4 40 5-45 1-40 (300)
177 PRK07608 ubiquinone biosynthes 98.3 3.2E-07 6.9E-12 88.3 3.8 38 3-40 4-41 (388)
178 TIGR02023 BchP-ChlP geranylger 98.3 2.9E-07 6.4E-12 88.5 3.5 32 5-36 1-32 (388)
179 PTZ00052 thioredoxin reductase 98.3 3.3E-07 7.2E-12 90.8 3.8 56 233-290 223-279 (499)
180 PRK12779 putative bifunctional 98.3 3.3E-07 7.2E-12 96.6 3.8 41 4-44 306-346 (944)
181 PRK06184 hypothetical protein; 98.3 3.5E-07 7.7E-12 91.0 3.9 37 3-39 2-38 (502)
182 KOG1298 Squalene monooxygenase 98.3 9.8E-07 2.1E-11 80.2 5.9 35 3-37 44-78 (509)
183 COG0492 TrxB Thioredoxin reduc 98.3 4E-07 8.7E-12 83.4 3.6 45 3-47 2-46 (305)
184 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 3.7E-07 7.9E-12 87.8 3.4 35 4-38 2-36 (390)
185 PRK08020 ubiF 2-octaprenyl-3-m 98.3 4.2E-07 9E-12 87.6 3.7 36 3-38 4-39 (391)
186 TIGR02053 MerA mercuric reduct 98.3 4E-07 8.7E-12 89.7 3.6 39 5-44 1-39 (463)
187 PRK13748 putative mercuric red 98.3 4.1E-07 8.8E-12 91.9 3.6 57 232-290 310-366 (561)
188 TIGR01790 carotene-cycl lycope 98.3 4.8E-07 1E-11 87.1 4.0 37 6-42 1-37 (388)
189 PRK12831 putative oxidoreducta 98.3 5E-07 1.1E-11 88.6 4.0 42 3-44 139-180 (464)
190 PRK09897 hypothetical protein; 98.3 6.1E-06 1.3E-10 81.5 11.2 39 5-43 2-43 (534)
191 PTZ00058 glutathione reductase 98.3 5.3E-07 1.2E-11 89.9 3.8 41 3-44 47-87 (561)
192 PRK05732 2-octaprenyl-6-methox 98.3 5.2E-07 1.1E-11 87.1 3.6 35 3-37 2-39 (395)
193 TIGR01984 UbiH 2-polyprenyl-6- 98.3 5.9E-07 1.3E-11 86.3 3.6 55 232-288 105-161 (382)
194 PRK06753 hypothetical protein; 98.3 5.6E-07 1.2E-11 86.1 3.4 35 6-40 2-36 (373)
195 KOG2404 Fumarate reductase, fl 98.3 1.6E-05 3.4E-10 70.8 12.0 40 6-45 11-50 (477)
196 PRK08641 sdhA succinate dehydr 98.3 6.3E-07 1.4E-11 90.4 3.9 41 3-43 2-42 (589)
197 COG0654 UbiH 2-polyprenyl-6-me 98.2 6.7E-07 1.5E-11 85.9 3.3 56 232-288 104-161 (387)
198 PLN02985 squalene monooxygenas 98.2 9.5E-07 2.1E-11 87.5 4.3 36 3-38 42-77 (514)
199 KOG2614 Kynurenine 3-monooxyge 98.2 9.1E-07 2E-11 81.7 3.8 41 4-44 2-42 (420)
200 PRK14727 putative mercuric red 98.2 7.4E-07 1.6E-11 88.0 3.4 43 3-45 15-57 (479)
201 PRK06617 2-octaprenyl-6-methox 98.2 8.2E-07 1.8E-11 85.0 3.4 55 232-288 104-159 (374)
202 TIGR01989 COQ6 Ubiquinone bios 98.2 8.9E-07 1.9E-11 86.5 3.7 34 5-38 1-38 (437)
203 PRK06834 hypothetical protein; 98.2 9E-07 2E-11 87.4 3.7 54 233-288 101-155 (488)
204 PRK07538 hypothetical protein; 98.2 8.6E-07 1.9E-11 86.0 3.5 35 5-39 1-35 (413)
205 PRK08244 hypothetical protein; 98.2 8.7E-07 1.9E-11 88.0 3.6 36 4-39 2-37 (493)
206 PRK06126 hypothetical protein; 98.2 9.4E-07 2E-11 89.0 3.8 36 3-38 6-41 (545)
207 PRK08243 4-hydroxybenzoate 3-m 98.2 8.8E-07 1.9E-11 85.3 3.4 35 4-38 2-36 (392)
208 PRK09853 putative selenate red 98.2 9.4E-07 2E-11 92.2 3.8 42 4-45 539-580 (1019)
209 COG3573 Predicted oxidoreducta 98.2 1.2E-06 2.5E-11 78.3 3.8 41 3-43 4-46 (552)
210 PF00743 FMO-like: Flavin-bind 98.2 9.7E-07 2.1E-11 87.4 3.5 41 5-45 2-42 (531)
211 PLN02507 glutathione reductase 98.2 1.1E-06 2.3E-11 87.1 3.7 57 232-290 244-301 (499)
212 PF13454 NAD_binding_9: FAD-NA 98.2 8.8E-06 1.9E-10 67.4 8.6 36 8-44 1-42 (156)
213 PLN02463 lycopene beta cyclase 98.2 1.1E-06 2.4E-11 85.3 3.5 35 4-38 28-62 (447)
214 PRK07588 hypothetical protein; 98.2 1E-06 2.2E-11 84.9 3.4 34 6-39 2-35 (391)
215 TIGR01423 trypano_reduc trypan 98.2 1.2E-06 2.7E-11 86.2 3.7 58 232-290 231-289 (486)
216 KOG0042 Glycerol-3-phosphate d 98.2 9.1E-07 2E-11 83.8 2.5 60 233-292 225-290 (680)
217 PTZ00367 squalene epoxidase; P 98.2 1.2E-06 2.6E-11 87.4 3.5 35 3-37 32-66 (567)
218 PRK08132 FAD-dependent oxidore 98.2 1.4E-06 3E-11 87.7 4.0 37 3-39 22-58 (547)
219 PRK08294 phenol 2-monooxygenas 98.2 1.4E-06 2.9E-11 88.7 4.0 44 1-44 29-75 (634)
220 PRK11445 putative oxidoreducta 98.2 1.3E-06 2.8E-11 82.8 3.6 34 5-39 2-35 (351)
221 PRK12769 putative oxidoreducta 98.2 1.4E-06 3E-11 89.3 4.0 41 4-44 327-367 (654)
222 PRK12775 putative trifunctiona 98.2 1.3E-06 2.8E-11 93.0 3.8 41 4-44 430-470 (1006)
223 TIGR01316 gltA glutamate synth 98.2 1.5E-06 3.1E-11 85.1 3.9 42 3-44 132-173 (449)
224 PLN02852 ferredoxin-NADP+ redu 98.2 1.4E-06 3.1E-11 84.9 3.7 42 4-45 26-69 (491)
225 TIGR01789 lycopene_cycl lycope 98.1 1.5E-06 3.2E-11 82.7 3.7 37 6-42 1-39 (370)
226 PRK06183 mhpA 3-(3-hydroxyphen 98.1 1.7E-06 3.6E-11 86.9 4.1 39 3-41 9-47 (538)
227 PLN02546 glutathione reductase 98.1 1.6E-06 3.4E-11 86.5 3.8 41 4-44 79-128 (558)
228 PRK05868 hypothetical protein; 98.1 1.6E-06 3.5E-11 82.7 3.6 34 6-39 3-36 (372)
229 PRK10262 thioredoxin reductase 98.1 1.6E-06 3.4E-11 81.2 3.4 42 3-45 5-46 (321)
230 PLN02927 antheraxanthin epoxid 98.1 1.6E-06 3.4E-11 87.3 3.5 35 3-37 80-114 (668)
231 TIGR01372 soxA sarcosine oxida 98.1 1.7E-06 3.7E-11 92.5 3.9 43 3-45 162-204 (985)
232 PLN02815 L-aspartate oxidase 98.1 1.8E-06 3.9E-11 86.8 3.7 39 4-43 29-67 (594)
233 PRK12778 putative bifunctional 98.1 2.1E-06 4.6E-11 89.5 4.2 41 4-44 431-471 (752)
234 PRK06475 salicylate hydroxylas 98.1 1.9E-06 4E-11 83.3 3.5 35 5-39 3-37 (400)
235 PRK08626 fumarate reductase fl 98.1 2E-06 4.3E-11 87.7 3.8 55 231-286 157-217 (657)
236 PRK05335 tRNA (uracil-5-)-meth 98.1 2.1E-06 4.5E-11 81.4 3.6 37 5-41 3-39 (436)
237 TIGR03197 MnmC_Cterm tRNA U-34 98.1 3.4E-05 7.3E-10 74.1 12.0 65 223-290 123-191 (381)
238 PRK12810 gltD glutamate syntha 98.1 2.4E-06 5.2E-11 84.2 3.9 41 4-44 143-183 (471)
239 TIGR03219 salicylate_mono sali 98.1 2.4E-06 5.1E-11 83.0 3.7 35 6-40 2-37 (414)
240 PTZ00153 lipoamide dehydrogena 98.1 2.5E-06 5.3E-11 86.4 3.6 41 4-44 116-157 (659)
241 PRK15317 alkyl hydroperoxide r 98.1 2.6E-06 5.7E-11 84.9 3.5 39 4-44 211-249 (517)
242 PLN02697 lycopene epsilon cycl 98.1 3.4E-06 7.4E-11 83.3 4.2 55 233-289 193-248 (529)
243 PTZ00188 adrenodoxin reductase 98.1 3.3E-06 7.2E-11 81.3 3.9 43 4-46 39-82 (506)
244 PF05834 Lycopene_cycl: Lycope 98.0 3.2E-06 7E-11 80.7 3.8 34 6-39 1-36 (374)
245 PRK12814 putative NADPH-depend 98.0 3.2E-06 6.9E-11 86.5 3.9 41 4-44 193-233 (652)
246 KOG2415 Electron transfer flav 98.0 3.7E-06 7.9E-11 77.3 3.6 44 3-46 75-124 (621)
247 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 3E-06 6.6E-11 80.8 3.2 38 5-42 1-38 (433)
248 PRK11749 dihydropyrimidine deh 98.0 3.8E-06 8.3E-11 82.5 3.9 41 4-44 140-180 (457)
249 PRK12809 putative oxidoreducta 98.0 3.8E-06 8.2E-11 85.8 3.9 41 4-44 310-350 (639)
250 TIGR01318 gltD_gamma_fam gluta 98.0 4.1E-06 9E-11 82.3 3.9 41 4-44 141-181 (467)
251 PRK09231 fumarate reductase fl 98.0 3.8E-06 8.2E-11 84.7 3.5 54 232-286 133-193 (582)
252 TIGR03140 AhpF alkyl hydropero 98.0 4E-06 8.8E-11 83.5 3.7 39 4-44 212-250 (515)
253 TIGR02462 pyranose_ox pyranose 98.0 4.4E-06 9.5E-11 82.5 3.7 39 5-43 1-39 (544)
254 COG1053 SdhA Succinate dehydro 98.0 5E-06 1.1E-10 82.6 3.6 43 2-44 4-46 (562)
255 PRK09077 L-aspartate oxidase; 98.0 5.1E-06 1.1E-10 83.1 3.6 40 3-43 7-46 (536)
256 COG0493 GltD NADPH-dependent g 98.0 5.4E-06 1.2E-10 80.1 3.5 42 5-46 124-165 (457)
257 KOG1238 Glucose dehydrogenase/ 98.0 0.0003 6.4E-09 69.2 15.3 37 3-39 56-93 (623)
258 TIGR01438 TGR thioredoxin and 97.9 6E-06 1.3E-10 81.5 3.6 57 232-290 220-280 (484)
259 PRK06996 hypothetical protein; 97.9 7.5E-06 1.6E-10 79.1 4.1 53 232-286 115-171 (398)
260 PRK06912 acoL dihydrolipoamide 97.9 7.7E-06 1.7E-10 80.4 3.7 57 232-290 211-269 (458)
261 PF07992 Pyr_redox_2: Pyridine 97.9 8.4E-06 1.8E-10 70.6 3.4 33 6-38 1-33 (201)
262 PRK06567 putative bifunctional 97.9 8.6E-06 1.9E-10 84.2 3.9 39 4-42 383-421 (1028)
263 COG3075 GlpB Anaerobic glycero 97.9 7.7E-06 1.7E-10 73.1 3.1 57 232-289 258-318 (421)
264 KOG2665 Predicted FAD-dependen 97.9 5.1E-05 1.1E-09 67.5 8.1 58 231-289 195-257 (453)
265 PF00070 Pyr_redox: Pyridine n 97.9 1.2E-05 2.7E-10 58.2 3.7 35 6-40 1-35 (80)
266 PRK12770 putative glutamate sy 97.9 1E-05 2.2E-10 76.8 4.1 41 4-44 18-58 (352)
267 TIGR01317 GOGAT_sm_gam glutama 97.9 9.7E-06 2.1E-10 80.0 4.0 40 5-44 144-183 (485)
268 KOG1335 Dihydrolipoamide dehyd 97.8 1.2E-05 2.7E-10 73.2 3.4 42 3-44 38-79 (506)
269 TIGR02061 aprA adenosine phosp 97.8 1.4E-05 2.9E-10 80.6 3.9 56 232-287 126-189 (614)
270 PRK12771 putative glutamate sy 97.8 1.3E-05 2.8E-10 80.9 3.7 41 4-44 137-177 (564)
271 KOG0399 Glutamate synthase [Am 97.8 1.7E-05 3.7E-10 81.1 3.5 42 4-45 1785-1826(2142)
272 PRK08255 salicylyl-CoA 5-hydro 97.7 1.9E-05 4E-10 82.4 3.5 33 6-38 2-36 (765)
273 KOG2853 Possible oxidoreductas 97.7 2.2E-05 4.8E-10 70.5 3.4 46 3-48 85-143 (509)
274 PRK07845 flavoprotein disulfid 97.7 2.2E-05 4.8E-10 77.3 3.6 56 233-290 219-275 (466)
275 PRK13984 putative oxidoreducta 97.7 2.4E-05 5.2E-10 79.7 3.9 41 4-44 283-323 (604)
276 TIGR03452 mycothione_red mycot 97.7 2.6E-05 5.7E-10 76.4 3.9 55 233-290 211-266 (452)
277 PRK13800 putative oxidoreducta 97.7 2.6E-05 5.7E-10 82.7 3.8 35 4-38 13-47 (897)
278 PRK07846 mycothione reductase; 97.7 3.2E-05 7E-10 75.7 4.0 54 233-289 208-262 (451)
279 KOG2960 Protein involved in th 97.7 2.6E-05 5.6E-10 65.3 2.6 41 4-44 76-118 (328)
280 PRK14989 nitrite reductase sub 97.7 0.00059 1.3E-08 71.7 13.0 58 233-290 188-246 (847)
281 TIGR00136 gidA glucose-inhibit 97.7 3.5E-05 7.6E-10 76.4 3.7 39 5-43 1-39 (617)
282 KOG2852 Possible oxidoreductas 97.6 3.9E-05 8.4E-10 67.4 2.4 42 3-44 9-56 (380)
283 TIGR02352 thiamin_ThiO glycine 97.5 0.00029 6.4E-09 66.3 7.3 67 223-290 125-194 (337)
284 COG0029 NadB Aspartate oxidase 97.4 0.00016 3.6E-09 68.6 4.3 61 224-285 124-192 (518)
285 COG0445 GidA Flavin-dependent 97.4 0.00012 2.6E-09 70.3 3.4 42 1-42 1-42 (621)
286 PRK09754 phenylpropionate diox 97.3 0.00021 4.6E-09 68.9 3.6 55 233-290 187-242 (396)
287 PRK09564 coenzyme A disulfide 97.2 0.00025 5.4E-09 69.6 3.1 56 232-289 191-246 (444)
288 PRK13512 coenzyme A disulfide 97.1 0.00033 7.1E-09 68.5 3.5 51 233-289 190-241 (438)
289 KOG1800 Ferredoxin/adrenodoxin 97.1 0.00049 1.1E-08 63.0 4.0 43 4-46 20-64 (468)
290 PTZ00318 NADH dehydrogenase-li 97.0 0.00058 1.3E-08 66.5 4.3 51 233-289 229-280 (424)
291 KOG0405 Pyridine nucleotide-di 97.0 0.00057 1.2E-08 61.9 3.6 42 3-44 19-60 (478)
292 COG1206 Gid NAD(FAD)-utilizing 97.0 0.00052 1.1E-08 61.7 2.8 40 4-43 3-42 (439)
293 KOG4716 Thioredoxin reductase 97.0 0.00054 1.2E-08 61.8 2.7 33 4-36 19-51 (503)
294 COG0446 HcaD Uncharacterized N 96.9 0.00061 1.3E-08 66.0 3.2 40 5-44 137-176 (415)
295 TIGR03377 glycerol3P_GlpA glyc 96.6 0.0063 1.4E-07 60.9 7.7 66 224-291 118-192 (516)
296 TIGR03169 Nterm_to_SelD pyridi 96.6 0.002 4.4E-08 61.4 3.9 51 233-289 192-243 (364)
297 PF03721 UDPG_MGDP_dh_N: UDP-g 96.5 0.002 4.4E-08 54.7 3.1 33 6-38 2-34 (185)
298 PF01210 NAD_Gly3P_dh_N: NAD-d 96.5 0.0019 4.2E-08 53.4 2.9 32 6-37 1-32 (157)
299 PF02737 3HCDH_N: 3-hydroxyacy 96.5 0.0018 4E-08 54.8 2.6 33 6-38 1-33 (180)
300 COG1252 Ndh NADH dehydrogenase 96.5 0.0028 6E-08 60.2 3.9 52 232-289 209-262 (405)
301 PRK04965 NADH:flavorubredoxin 96.4 0.0025 5.4E-08 61.1 3.6 56 233-290 184-240 (377)
302 KOG2311 NAD/FAD-utilizing prot 96.4 0.0025 5.3E-08 60.3 3.0 34 3-36 27-60 (679)
303 KOG3855 Monooxygenase involved 96.4 0.0033 7.2E-08 58.4 3.6 35 4-38 36-74 (481)
304 PRK09754 phenylpropionate diox 96.1 0.0043 9.3E-08 59.9 3.4 39 5-43 145-183 (396)
305 PRK07819 3-hydroxybutyryl-CoA 96.1 0.0049 1.1E-07 56.4 3.3 39 1-39 1-40 (286)
306 PRK07530 3-hydroxybutyryl-CoA 96.0 0.0052 1.1E-07 56.6 3.3 38 1-38 1-38 (292)
307 COG4529 Uncharacterized protei 96.0 0.006 1.3E-07 58.3 3.6 40 5-44 2-44 (474)
308 PRK02705 murD UDP-N-acetylmura 95.9 0.0063 1.4E-07 60.0 3.4 34 6-39 2-35 (459)
309 PRK01438 murD UDP-N-acetylmura 95.8 0.0075 1.6E-07 59.8 3.6 34 5-38 17-50 (480)
310 KOG2755 Oxidoreductase [Genera 95.8 0.0041 8.8E-08 54.3 1.5 53 7-59 2-56 (334)
311 PRK06129 3-hydroxyacyl-CoA deh 95.7 0.007 1.5E-07 56.2 2.8 33 6-38 4-36 (308)
312 PRK07251 pyridine nucleotide-d 95.7 0.0095 2.1E-07 58.3 3.8 38 5-42 158-195 (438)
313 COG3634 AhpF Alkyl hydroperoxi 95.7 0.0052 1.1E-07 55.8 1.6 39 4-44 211-249 (520)
314 PRK04965 NADH:flavorubredoxin 95.7 0.01 2.2E-07 56.9 3.7 37 5-41 142-178 (377)
315 PRK05976 dihydrolipoamide dehy 95.6 0.0092 2E-07 59.0 3.4 36 5-40 181-216 (472)
316 TIGR03862 flavo_PP4765 unchara 95.6 0.04 8.7E-07 52.2 7.2 61 222-286 75-138 (376)
317 PF07156 Prenylcys_lyase: Pren 95.5 0.057 1.2E-06 51.1 8.1 110 163-287 68-185 (368)
318 PF02558 ApbA: Ketopantoate re 95.5 0.012 2.6E-07 48.3 3.1 31 7-37 1-31 (151)
319 PRK07066 3-hydroxybutyryl-CoA 95.5 0.013 2.8E-07 54.4 3.5 34 5-38 8-41 (321)
320 COG0569 TrkA K+ transport syst 95.4 0.012 2.5E-07 51.9 2.9 33 6-38 2-34 (225)
321 TIGR01350 lipoamide_DH dihydro 95.4 0.012 2.6E-07 58.0 3.4 37 5-41 171-207 (461)
322 PRK06249 2-dehydropantoate 2-r 95.4 0.015 3.3E-07 54.1 3.7 34 4-37 5-38 (313)
323 PRK08293 3-hydroxybutyryl-CoA 95.4 0.014 3E-07 53.7 3.3 34 5-38 4-37 (287)
324 PRK09260 3-hydroxybutyryl-CoA 95.3 0.012 2.5E-07 54.1 2.7 33 6-38 3-35 (288)
325 PF13434 K_oxygenase: L-lysine 95.3 0.0072 1.6E-07 56.8 1.3 36 4-39 2-38 (341)
326 COG1004 Ugd Predicted UDP-gluc 95.3 0.013 2.7E-07 54.7 2.8 32 6-37 2-33 (414)
327 TIGR02053 MerA mercuric reduct 95.3 0.014 3.1E-07 57.6 3.3 37 5-41 167-203 (463)
328 PRK11064 wecC UDP-N-acetyl-D-m 95.3 0.015 3.2E-07 56.4 3.3 37 1-38 1-37 (415)
329 PRK06130 3-hydroxybutyryl-CoA 95.3 0.016 3.4E-07 53.9 3.5 37 1-37 1-37 (311)
330 KOG0404 Thioredoxin reductase 95.3 0.01 2.3E-07 50.5 2.0 43 5-47 9-55 (322)
331 PRK06467 dihydrolipoamide dehy 95.3 0.015 3.3E-07 57.5 3.4 38 5-42 175-212 (471)
332 PRK06370 mercuric reductase; V 95.2 0.017 3.8E-07 56.9 3.7 38 5-42 172-209 (463)
333 TIGR01421 gluta_reduc_1 glutat 95.2 0.016 3.5E-07 56.9 3.4 37 5-41 167-203 (450)
334 PRK14106 murD UDP-N-acetylmura 95.2 0.019 4.1E-07 56.5 3.8 34 4-37 5-38 (450)
335 PLN02545 3-hydroxybutyryl-CoA 95.2 0.017 3.8E-07 53.2 3.4 38 1-38 1-38 (295)
336 COG1249 Lpd Pyruvate/2-oxoglut 95.2 0.017 3.8E-07 56.1 3.4 37 5-41 174-210 (454)
337 PRK04148 hypothetical protein; 95.2 0.015 3.3E-07 46.0 2.5 33 5-38 18-50 (134)
338 PRK06115 dihydrolipoamide dehy 95.2 0.018 3.8E-07 56.9 3.6 37 5-41 175-211 (466)
339 PRK06912 acoL dihydrolipoamide 95.1 0.017 3.7E-07 56.9 3.4 37 5-41 171-207 (458)
340 PRK06416 dihydrolipoamide dehy 95.1 0.018 3.9E-07 56.9 3.5 37 5-41 173-209 (462)
341 PRK07846 mycothione reductase; 95.1 0.018 4E-07 56.5 3.5 36 5-40 167-202 (451)
342 PRK13512 coenzyme A disulfide 95.1 0.019 4.1E-07 56.2 3.4 37 5-41 149-185 (438)
343 PRK07818 dihydrolipoamide dehy 95.0 0.02 4.4E-07 56.5 3.5 37 5-41 173-209 (466)
344 TIGR03385 CoA_CoA_reduc CoA-di 95.0 0.021 4.5E-07 55.8 3.4 36 5-40 138-173 (427)
345 PRK05249 soluble pyridine nucl 94.9 0.025 5.4E-07 55.8 3.8 38 5-42 176-213 (461)
346 PRK14618 NAD(P)H-dependent gly 94.9 0.027 5.8E-07 52.8 3.8 37 1-37 1-37 (328)
347 KOG3923 D-aspartate oxidase [A 94.8 0.022 4.8E-07 50.8 2.8 36 3-38 2-44 (342)
348 PRK06292 dihydrolipoamide dehy 94.8 0.025 5.4E-07 55.8 3.6 37 5-41 170-206 (460)
349 PF13738 Pyr_redox_3: Pyridine 94.8 0.07 1.5E-06 46.0 6.0 54 232-287 82-136 (203)
350 PRK06035 3-hydroxyacyl-CoA deh 94.8 0.022 4.7E-07 52.5 2.8 34 5-38 4-37 (291)
351 PRK08229 2-dehydropantoate 2-r 94.8 0.023 4.9E-07 53.7 3.1 31 6-36 4-34 (341)
352 PRK06327 dihydrolipoamide dehy 94.7 0.026 5.7E-07 55.8 3.5 37 5-41 184-220 (475)
353 PRK06522 2-dehydropantoate 2-r 94.7 0.027 5.8E-07 52.2 3.2 32 6-37 2-33 (304)
354 PRK05708 2-dehydropantoate 2-r 94.7 0.028 6E-07 52.1 3.3 34 4-37 2-35 (305)
355 PRK05808 3-hydroxybutyryl-CoA 94.6 0.027 5.8E-07 51.6 3.0 34 5-38 4-37 (282)
356 cd01080 NAD_bind_m-THF_DH_Cycl 94.6 0.04 8.6E-07 45.9 3.7 33 4-36 44-77 (168)
357 TIGR03452 mycothione_red mycot 94.6 0.029 6.2E-07 55.2 3.3 37 5-41 170-206 (452)
358 PRK04176 ribulose-1,5-biphosph 94.5 0.13 2.9E-06 46.2 7.2 57 232-288 104-172 (257)
359 KOG2304 3-hydroxyacyl-CoA dehy 94.5 0.03 6.5E-07 47.8 2.8 37 3-39 10-46 (298)
360 PRK07531 bifunctional 3-hydrox 94.5 0.034 7.3E-07 55.2 3.5 37 1-37 1-37 (495)
361 PRK07845 flavoprotein disulfid 94.5 0.038 8.2E-07 54.6 3.9 39 5-43 178-216 (466)
362 TIGR02374 nitri_red_nirB nitri 94.4 0.031 6.8E-07 58.8 3.4 37 5-41 141-177 (785)
363 TIGR03140 AhpF alkyl hydropero 94.4 0.036 7.7E-07 55.5 3.5 36 5-40 353-388 (515)
364 COG0686 Ald Alanine dehydrogen 94.4 0.028 6E-07 50.5 2.4 43 4-46 168-218 (371)
365 PRK12921 2-dehydropantoate 2-r 94.3 0.034 7.4E-07 51.5 3.0 30 6-35 2-31 (305)
366 TIGR03026 NDP-sugDHase nucleot 94.3 0.035 7.5E-07 53.8 3.1 33 6-38 2-34 (411)
367 PTZ00153 lipoamide dehydrogena 94.2 0.038 8.3E-07 56.5 3.4 38 5-42 313-350 (659)
368 TIGR01424 gluta_reduc_2 glutat 94.2 0.039 8.6E-07 54.1 3.4 36 5-40 167-202 (446)
369 PTZ00058 glutathione reductase 94.2 0.038 8.2E-07 55.6 3.2 36 5-40 238-273 (561)
370 PRK00094 gpsA NAD(P)H-dependen 94.1 0.041 8.8E-07 51.5 3.1 32 6-37 3-34 (325)
371 PRK14989 nitrite reductase sub 94.1 0.04 8.8E-07 58.2 3.4 37 5-41 146-182 (847)
372 TIGR01763 MalateDH_bact malate 94.1 0.049 1.1E-06 50.3 3.6 34 5-38 2-36 (305)
373 cd05292 LDH_2 A subgroup of L- 94.1 0.046 1E-06 50.6 3.4 33 6-38 2-36 (308)
374 PF01262 AlaDh_PNT_C: Alanine 94.0 0.05 1.1E-06 45.5 3.2 34 4-37 20-53 (168)
375 PF13241 NAD_binding_7: Putati 93.9 0.051 1.1E-06 41.3 2.8 34 4-37 7-40 (103)
376 PLN02507 glutathione reductase 93.9 0.048 1E-06 54.3 3.4 36 5-40 204-239 (499)
377 PRK08010 pyridine nucleotide-d 93.8 0.056 1.2E-06 53.0 3.6 37 5-41 159-195 (441)
378 TIGR03143 AhpF_homolog putativ 93.8 0.054 1.2E-06 54.7 3.5 35 5-39 144-178 (555)
379 PRK14619 NAD(P)H-dependent gly 93.8 0.06 1.3E-06 50.0 3.6 36 3-38 3-38 (308)
380 PRK10262 thioredoxin reductase 93.8 0.058 1.3E-06 50.4 3.5 35 5-39 147-181 (321)
381 TIGR01816 sdhA_forward succina 93.7 0.18 4E-06 51.0 7.2 53 232-285 119-177 (565)
382 TIGR01316 gltA glutamate synth 93.6 0.057 1.2E-06 53.0 3.2 34 5-38 273-306 (449)
383 PRK15317 alkyl hydroperoxide r 93.6 0.06 1.3E-06 53.9 3.4 35 5-39 352-386 (517)
384 PTZ00082 L-lactate dehydrogena 93.5 0.079 1.7E-06 49.3 3.9 39 1-39 3-42 (321)
385 TIGR01470 cysG_Nterm siroheme 93.5 0.085 1.8E-06 45.6 3.8 35 4-38 9-43 (205)
386 KOG1336 Monodehydroascorbate/f 93.4 0.2 4.3E-06 48.0 6.3 58 232-289 255-313 (478)
387 PLN02546 glutathione reductase 93.4 0.066 1.4E-06 53.9 3.4 37 5-41 253-289 (558)
388 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.4 0.057 1.2E-06 53.5 2.8 34 5-38 6-39 (503)
389 PRK06718 precorrin-2 dehydroge 93.4 0.085 1.8E-06 45.5 3.6 33 4-36 10-42 (202)
390 COG3486 IucD Lysine/ornithine 93.4 0.092 2E-06 49.2 3.9 39 1-39 2-41 (436)
391 PRK15057 UDP-glucose 6-dehydro 93.4 0.059 1.3E-06 51.6 2.8 32 6-38 2-33 (388)
392 PRK08268 3-hydroxy-acyl-CoA de 93.4 0.068 1.5E-06 53.1 3.3 34 5-38 8-41 (507)
393 PF01488 Shikimate_DH: Shikima 93.3 0.084 1.8E-06 42.3 3.3 33 4-36 12-45 (135)
394 TIGR02354 thiF_fam2 thiamine b 93.3 0.079 1.7E-06 45.6 3.3 33 4-36 21-54 (200)
395 PLN02353 probable UDP-glucose 93.3 0.069 1.5E-06 52.4 3.2 33 6-38 3-37 (473)
396 PRK05675 sdhA succinate dehydr 93.3 0.25 5.4E-06 50.1 7.3 54 232-285 126-185 (570)
397 PRK13748 putative mercuric red 93.3 0.075 1.6E-06 53.9 3.6 34 5-38 271-304 (561)
398 PRK07417 arogenate dehydrogena 93.3 0.059 1.3E-06 49.2 2.5 32 6-37 2-33 (279)
399 KOG3851 Sulfide:quinone oxidor 93.2 0.065 1.4E-06 48.4 2.5 56 229-285 233-292 (446)
400 PRK14620 NAD(P)H-dependent gly 93.2 0.077 1.7E-06 49.7 3.2 32 6-37 2-33 (326)
401 PRK12770 putative glutamate sy 93.1 0.071 1.5E-06 50.5 3.0 34 5-38 173-207 (352)
402 PRK12831 putative oxidoreducta 93.1 0.076 1.7E-06 52.3 3.2 34 5-38 282-315 (464)
403 PRK06719 precorrin-2 dehydroge 93.1 0.11 2.3E-06 42.9 3.6 31 4-34 13-43 (157)
404 COG0771 MurD UDP-N-acetylmuram 93.1 0.085 1.9E-06 50.9 3.4 36 4-39 7-42 (448)
405 TIGR00518 alaDH alanine dehydr 93.1 0.075 1.6E-06 50.6 3.0 34 4-37 167-200 (370)
406 TIGR01292 TRX_reduct thioredox 93.0 0.09 1.9E-06 48.4 3.3 35 5-39 142-176 (300)
407 TIGR00292 thiazole biosynthesi 92.9 0.4 8.6E-06 43.1 7.3 55 232-287 100-168 (254)
408 PTZ00052 thioredoxin reductase 92.9 0.093 2E-06 52.3 3.6 32 5-36 183-214 (499)
409 PRK14727 putative mercuric red 92.9 0.1 2.2E-06 51.8 3.7 33 5-37 189-221 (479)
410 PRK11730 fadB multifunctional 92.9 0.075 1.6E-06 55.2 2.9 34 5-38 314-347 (715)
411 PRK01710 murD UDP-N-acetylmura 92.8 0.091 2E-06 51.8 3.3 34 5-38 15-48 (458)
412 PF03446 NAD_binding_2: NAD bi 92.8 0.11 2.3E-06 43.3 3.2 32 6-37 3-34 (163)
413 TIGR01438 TGR thioredoxin and 92.8 0.091 2E-06 52.1 3.2 32 5-36 181-212 (484)
414 COG1748 LYS9 Saccharopine dehy 92.7 0.1 2.2E-06 49.3 3.3 31 6-36 3-34 (389)
415 TIGR02032 GG-red-SF geranylger 92.7 0.32 7E-06 44.4 6.7 56 232-288 91-147 (295)
416 COG1250 FadB 3-hydroxyacyl-CoA 92.7 0.11 2.4E-06 47.5 3.4 32 5-36 4-35 (307)
417 PRK06116 glutathione reductase 92.7 0.4 8.6E-06 47.2 7.6 57 233-290 209-266 (450)
418 TIGR02437 FadB fatty oxidation 92.6 0.084 1.8E-06 54.8 2.9 34 5-38 314-347 (714)
419 PF00070 Pyr_redox: Pyridine n 92.4 0.3 6.6E-06 34.9 4.9 40 232-273 40-80 (80)
420 PF02254 TrkA_N: TrkA-N domain 92.3 0.1 2.3E-06 40.4 2.5 32 7-38 1-32 (116)
421 TIGR01915 npdG NADPH-dependent 92.3 0.12 2.7E-06 45.2 3.2 32 6-37 2-34 (219)
422 PRK09564 coenzyme A disulfide 92.2 0.47 1E-05 46.6 7.5 35 6-40 2-38 (444)
423 cd00401 AdoHcyase S-adenosyl-L 92.0 0.14 3E-06 49.2 3.3 35 4-38 202-236 (413)
424 PRK09424 pntA NAD(P) transhydr 92.0 0.12 2.6E-06 51.0 2.8 34 4-37 165-198 (509)
425 PRK00421 murC UDP-N-acetylmura 91.9 0.14 3E-06 50.6 3.3 35 4-38 7-42 (461)
426 PRK04690 murD UDP-N-acetylmura 91.8 0.14 3.1E-06 50.5 3.3 34 5-38 9-42 (468)
427 TIGR02441 fa_ox_alpha_mit fatt 91.8 0.12 2.6E-06 53.8 2.8 34 5-38 336-369 (737)
428 TIGR01505 tartro_sem_red 2-hyd 91.8 0.12 2.5E-06 47.6 2.5 32 6-37 1-32 (291)
429 PRK02472 murD UDP-N-acetylmura 91.7 0.16 3.5E-06 49.9 3.6 34 5-38 6-39 (447)
430 cd05291 HicDH_like L-2-hydroxy 91.7 0.17 3.6E-06 46.9 3.4 33 6-38 2-36 (306)
431 PRK03369 murD UDP-N-acetylmura 91.6 0.15 3.1E-06 50.7 3.1 33 5-37 13-45 (488)
432 PRK01368 murD UDP-N-acetylmura 91.6 0.18 3.8E-06 49.6 3.7 32 5-37 7-38 (454)
433 PRK04308 murD UDP-N-acetylmura 91.6 0.2 4.3E-06 49.2 4.1 35 5-39 6-40 (445)
434 PRK11749 dihydropyrimidine deh 91.6 0.15 3.3E-06 50.2 3.2 34 5-38 274-308 (457)
435 KOG1335 Dihydrolipoamide dehyd 91.5 0.098 2.1E-06 48.5 1.6 40 5-44 212-251 (506)
436 cd01075 NAD_bind_Leu_Phe_Val_D 91.5 0.21 4.5E-06 43.1 3.5 33 5-37 29-61 (200)
437 PRK11199 tyrA bifunctional cho 91.4 0.19 4.2E-06 47.9 3.6 33 5-37 99-132 (374)
438 PRK06223 malate dehydrogenase; 91.4 0.19 4.1E-06 46.6 3.5 34 5-38 3-37 (307)
439 PF13478 XdhC_C: XdhC Rossmann 91.4 0.16 3.6E-06 40.6 2.6 32 7-38 1-32 (136)
440 PRK11559 garR tartronate semia 91.3 0.18 3.9E-06 46.5 3.2 32 6-37 4-35 (296)
441 PRK00066 ldh L-lactate dehydro 91.3 0.24 5.2E-06 46.0 4.0 35 4-38 6-42 (315)
442 PRK03803 murD UDP-N-acetylmura 91.3 0.19 4.1E-06 49.4 3.5 38 1-38 3-40 (448)
443 TIGR02374 nitri_red_nirB nitri 91.2 0.72 1.6E-05 48.7 7.9 55 234-290 184-239 (785)
444 TIGR02440 FadJ fatty oxidation 91.2 0.15 3.3E-06 52.8 2.9 34 5-38 305-339 (699)
445 PRK08306 dipicolinate synthase 91.1 0.2 4.3E-06 46.2 3.2 34 4-37 152-185 (296)
446 PRK12834 putative FAD-binding 91.1 0.59 1.3E-05 47.3 6.9 55 233-288 149-227 (549)
447 PRK15116 sulfur acceptor prote 91.1 0.2 4.3E-06 45.1 3.1 35 4-38 30-65 (268)
448 TIGR01423 trypano_reduc trypan 91.0 0.75 1.6E-05 45.6 7.5 43 3-45 2-53 (486)
449 PRK11154 fadJ multifunctional 91.0 0.16 3.5E-06 52.7 2.8 33 5-37 310-343 (708)
450 PRK15461 NADH-dependent gamma- 90.9 0.19 4.1E-06 46.4 2.9 32 6-37 3-34 (296)
451 COG1893 ApbA Ketopantoate redu 90.9 0.17 3.6E-06 46.8 2.5 33 6-38 2-34 (307)
452 cd01339 LDH-like_MDH L-lactate 90.9 0.18 4E-06 46.6 2.8 31 7-37 1-32 (300)
453 TIGR01984 UbiH 2-polyprenyl-6- 90.8 0.75 1.6E-05 44.0 7.1 34 6-39 1-35 (382)
454 COG1252 Ndh NADH dehydrogenase 90.8 0.58 1.3E-05 44.7 6.0 35 4-38 3-39 (405)
455 PF00670 AdoHcyase_NAD: S-aden 90.8 0.2 4.3E-06 41.1 2.6 34 4-37 23-56 (162)
456 PRK07688 thiamine/molybdopteri 90.7 0.23 4.9E-06 46.6 3.3 33 4-36 24-57 (339)
457 PRK14573 bifunctional D-alanyl 90.7 0.2 4.4E-06 53.1 3.3 38 1-38 1-39 (809)
458 PRK12549 shikimate 5-dehydroge 90.7 0.24 5.1E-06 45.3 3.3 33 5-37 128-161 (284)
459 PRK00683 murD UDP-N-acetylmura 90.6 0.22 4.7E-06 48.4 3.2 34 5-38 4-37 (418)
460 TIGR00936 ahcY adenosylhomocys 90.5 0.29 6.3E-06 46.8 3.8 35 4-38 195-229 (406)
461 PRK03806 murD UDP-N-acetylmura 90.5 0.27 5.8E-06 48.2 3.8 34 5-38 7-40 (438)
462 cd05191 NAD_bind_amino_acid_DH 90.4 0.34 7.3E-06 35.3 3.4 32 4-35 23-55 (86)
463 PRK12475 thiamine/molybdopteri 90.4 0.25 5.5E-06 46.3 3.3 34 4-37 24-58 (338)
464 COG0644 FixC Dehydrogenases (f 90.4 0.9 2E-05 43.8 7.2 56 233-288 96-151 (396)
465 PRK08626 fumarate reductase fl 90.4 0.8 1.7E-05 47.3 7.2 39 4-42 5-43 (657)
466 PRK07045 putative monooxygenas 90.4 1 2.3E-05 43.2 7.7 56 233-288 107-164 (388)
467 PF00899 ThiF: ThiF family; I 90.3 0.2 4.3E-06 40.2 2.2 33 4-36 2-35 (135)
468 TIGR01988 Ubi-OHases Ubiquinon 90.3 0.89 1.9E-05 43.5 7.2 35 6-40 1-35 (385)
469 TIGR02853 spore_dpaA dipicolin 90.3 0.25 5.4E-06 45.2 3.1 34 5-38 152-185 (287)
470 PRK12778 putative bifunctional 90.3 0.21 4.6E-06 52.5 3.0 34 5-38 571-605 (752)
471 cd01078 NAD_bind_H4MPT_DH NADP 90.2 0.32 7E-06 41.7 3.6 33 4-36 28-61 (194)
472 PTZ00142 6-phosphogluconate de 90.2 0.19 4.2E-06 49.3 2.4 34 5-38 2-35 (470)
473 cd05311 NAD_bind_2_malic_enz N 90.2 0.26 5.6E-06 43.4 3.0 34 4-37 25-61 (226)
474 TIGR00561 pntA NAD(P) transhyd 90.0 0.24 5.3E-06 48.8 2.9 35 4-38 164-198 (511)
475 TIGR02964 xanthine_xdhC xanthi 89.9 0.39 8.5E-06 42.8 4.0 35 4-38 100-134 (246)
476 PRK14694 putative mercuric red 89.8 1.2 2.6E-05 44.0 7.7 41 3-44 5-45 (468)
477 PTZ00117 malate dehydrogenase; 89.8 0.35 7.5E-06 45.1 3.6 36 3-38 4-40 (319)
478 PRK06849 hypothetical protein; 89.7 0.38 8.2E-06 46.3 4.0 39 1-39 1-40 (389)
479 PRK05714 2-octaprenyl-3-methyl 89.6 1.1 2.4E-05 43.2 7.3 35 4-38 2-36 (405)
480 PRK06834 hypothetical protein; 89.6 1.1 2.3E-05 44.6 7.2 36 3-38 2-37 (488)
481 PRK00141 murD UDP-N-acetylmura 89.6 0.32 6.9E-06 48.1 3.4 33 5-37 16-48 (473)
482 PF00056 Ldh_1_N: lactate/mala 89.5 0.39 8.4E-06 38.8 3.3 33 6-38 2-37 (141)
483 PRK09496 trkA potassium transp 89.5 0.27 5.9E-06 48.4 2.9 33 6-38 2-34 (453)
484 COG2084 MmsB 3-hydroxyisobutyr 89.4 0.33 7.1E-06 44.0 3.1 34 6-39 2-35 (286)
485 cd01487 E1_ThiF_like E1_ThiF_l 89.4 0.33 7.2E-06 40.8 3.0 32 6-37 1-33 (174)
486 TIGR00507 aroE shikimate 5-deh 89.3 0.38 8.2E-06 43.7 3.5 33 5-37 118-150 (270)
487 PRK02006 murD UDP-N-acetylmura 89.3 0.31 6.6E-06 48.7 3.1 33 5-37 8-40 (498)
488 TIGR00872 gnd_rel 6-phosphoglu 89.2 0.29 6.3E-06 45.1 2.7 33 6-38 2-34 (298)
489 TIGR02356 adenyl_thiF thiazole 88.9 0.41 8.9E-06 41.3 3.3 33 4-36 21-54 (202)
490 PRK05476 S-adenosyl-L-homocyst 88.9 0.46 9.9E-06 45.8 3.8 35 4-38 212-246 (425)
491 PRK07502 cyclohexadienyl dehyd 88.8 0.31 6.6E-06 45.2 2.6 33 5-37 7-41 (307)
492 cd01065 NAD_bind_Shikimate_DH 88.8 0.42 9.1E-06 39.1 3.2 35 4-38 19-54 (155)
493 PRK06179 short chain dehydroge 88.8 0.45 9.8E-06 43.0 3.7 37 1-37 1-38 (270)
494 PRK08163 salicylate hydroxylas 88.8 1.4 3E-05 42.5 7.2 55 232-288 109-165 (396)
495 PLN02697 lycopene epsilon cycl 88.7 1.4 3.1E-05 44.0 7.3 33 4-36 108-140 (529)
496 KOG2305 3-hydroxyacyl-CoA dehy 88.7 0.3 6.6E-06 41.9 2.2 33 4-36 3-35 (313)
497 PLN02256 arogenate dehydrogena 88.6 0.47 1E-05 43.8 3.6 34 4-37 36-69 (304)
498 cd05293 LDH_1 A subgroup of L- 88.6 0.51 1.1E-05 43.7 3.8 35 3-37 2-38 (312)
499 TIGR00136 gidA glucose-inhibit 88.5 1.2 2.7E-05 44.9 6.7 55 233-288 97-153 (617)
500 PRK09599 6-phosphogluconate de 88.4 0.37 8E-06 44.6 2.8 32 6-37 2-33 (301)
No 1
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=4.1e-62 Score=458.17 Aligned_cols=416 Identities=57% Similarity=0.984 Sum_probs=342.6
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCC-CCCCCCCCCcceEEccCcce
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE-QPPAHLGSSRDYNVDMIPKF 79 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~-~~~~~~g~~~~~~~d~gp~~ 79 (419)
|+++|||||+|+|+..+..|+.|+++|++|+++|+|+++||.+.++++.++.++|.... ..+..+|.++.|++|+.|++
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 89999999999999999999999999999999999999999999999999999997652 12345678899999999999
Q ss_pred eecCchhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768 80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (419)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
+++.++++++|+.+++.+|++|+.++..|+|.+|++.++|.++.+.|.+.++++++|+.+++|+.++.++.+..+..++.
T Consensus 81 l~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~ 160 (438)
T PF00996_consen 81 LYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG 160 (438)
T ss_dssp EETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred hhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998766666666
Q ss_pred ccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHH
Q 014768 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (419)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~ 239 (419)
++....++.++++++++++.+++++.+++++...+.+...|+.+++.++.+|+.|+++| |.+||+||.+|.++|+|+++
T Consensus 161 ~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgry-G~sPfLyP~YG~GELpQ~Fc 239 (438)
T PF00996_consen 161 LDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRY-GKSPFLYPLYGLGELPQAFC 239 (438)
T ss_dssp G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCC-SSSSEEEETT-TTHHHHHHH
T ss_pred cccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhcc-CCCCEEEEccCCccHHHHHH
Confidence 66778999999999999999999999999998887777778889999999999999999 98899999999999999999
Q ss_pred HHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccccccCeeEEEEEEecCCCCCCCCCCeEE
Q 014768 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ 319 (419)
Q Consensus 240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (419)
|.++..||.+++|++|.+|.+++++++.+|..+|++++|+.||++++|.|+.+.+.+.+.|++++++||+++.++....+
T Consensus 240 Rl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~~~~~V~RaI~Il~~pi~~t~~~~s~~ 319 (438)
T PF00996_consen 240 RLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVKKTGQVSRAICILDHPIPNTEDASSVQ 319 (438)
T ss_dssp HHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEEEEEEEEEEEEEESS-STTSTT-SSEE
T ss_pred HHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcccccccceEEEEEEEEcCCCCCCCCCceEE
Confidence 99999999999999999999866899999999999999999999999988766555678999999999998766556778
Q ss_pred EEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceeeeeccccccCCCCCCCcE
Q 014768 320 VILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNC 399 (419)
Q Consensus 320 i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 399 (419)
+++|+.+..+.+.+|+.+.|.....||+|+++++++|.+++.+++++|+++++...++.+.|..+-+.++-.-.+..++|
T Consensus 320 IiiP~~~~~~~~dIyv~~~ss~~~~CP~G~yi~~~St~~~t~~p~~eL~~~l~lL~~i~e~f~~v~~~~~p~~~~~~~~i 399 (438)
T PF00996_consen 320 IIIPQSQVGRKSDIYVLQLSSSTGVCPKGQYIAYVSTTVETSNPEEELEPALELLGPIEEKFVSVSDLYEPTDDGTDDNI 399 (438)
T ss_dssp EEE-GGGCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEEE-SS-HHHHTHHHHHTT-SESEEEEEEEEEEEESSSSTTTSE
T ss_pred EecCCcccCCCCCeEEEEECCCccccCCCcEEEEEEeccCCCCcHHHHHHHHHhhccHHHHhcchhhcccccCCCccCce
Confidence 88998888777779999999889999999999999999888899999999998888888888877777776557788999
Q ss_pred EEecCCCCCCchHHHhhh
Q 014768 400 FISTVTMMPQHTLSQLSR 417 (419)
Q Consensus 400 ~~~~~~tp~~d~~~~~~~ 417 (419)
.....++++.|||.....
T Consensus 400 ~is~~~dat~hfe~~~~d 417 (438)
T PF00996_consen 400 FISKSYDATSHFETTCED 417 (438)
T ss_dssp EE-----S-SBSHHHHHH
T ss_pred EEcCCCCcccchHHHHHH
Confidence 999999999999987653
No 2
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=3.4e-60 Score=452.21 Aligned_cols=414 Identities=62% Similarity=1.089 Sum_probs=367.9
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCccee
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~ 80 (419)
|+++|||||||+|++|+++|+.|+++|++|+++|+|+++||+++|+++.+++.+|..+...+..+|.++.|++|+.|+++
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l 80 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI 80 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence 88999999999999999999999999999999999999999999999999888887665567788999999999999999
Q ss_pred ecCchhhHHHHhcCCcceeeEEEecceeEE-eCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768 81 IANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (419)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
+..+.++++|..+++.+|++|..++..|++ .+|+..++|.++.+.|.+.++++++|+.+++|+.++.++...++..++.
T Consensus 81 ~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~ 160 (443)
T PTZ00363 81 MASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG 160 (443)
T ss_pred ecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence 999999999999999999999999999988 8899999999999999999999999999999999999887655555555
Q ss_pred ccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHH
Q 014768 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (419)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~ 239 (419)
.++...++.+|++++++++..++++.++++++..+.+...+...++.++..|+.+++.| |.++++||+||+++|+++|+
T Consensus 161 ~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~-g~~p~~yp~gG~g~L~qal~ 239 (443)
T PTZ00363 161 LNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS 239 (443)
T ss_pred cCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc-cCCcceeeCCCHHHHHHHHH
Confidence 45567899999999999999999998888887666666667888888999999999999 77889999999999999999
Q ss_pred HHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCccccccCeeEEEEEEecCCCCCCCCCCeE
Q 014768 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSV 318 (419)
Q Consensus 240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (419)
|.+++.|++|+++++|++|..++++++++|++ +|++++|+.||++++++|..+.+...+.|++++++||+++..+....
T Consensus 240 r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~~~~~~~v~R~i~i~~~pi~~~~~~~~~ 319 (443)
T PTZ00363 240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKVIRCICILNHPIPNTNNANSC 319 (443)
T ss_pred HHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccccccccEEEEEEEEEcccccccCcCccE
Confidence 99999999999999999999854578889998 89999999999999999876665678999999999999877655677
Q ss_pred EEEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceeeeeccccccCCCCCCCc
Q 014768 319 QVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDN 398 (419)
Q Consensus 319 ~i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (419)
++++|+.++++.+.+|+.+.|.....||+|+++++++|.+++.+++++|+++++..-++.+.|..+-+..+..-.+..++
T Consensus 320 ~i~~P~~~~~~~~~i~v~~~s~~~~~cp~g~~i~~~st~~~t~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 399 (443)
T PTZ00363 320 QIIIPQKQLGRKNDIYIMLVSSNHGVCPKGKYIAIISTTVETNNPEKEIEPALKLLGPIEEKFVSISDLYEPTEDGKKDN 399 (443)
T ss_pred EEEECCcccCCCCCEEEEEecCCCCcCCCCcEEEEEEEecCCCCHHHHHHHHHHHhccchheEEeccccccccccCCCCC
Confidence 88899999887889999999988999999999999999998889999999998866667777775555554433567799
Q ss_pred EEEecCCCCCCchHHHh
Q 014768 399 CFISTVTMMPQHTLSQL 415 (419)
Q Consensus 399 i~~~~~~tp~~d~~~~~ 415 (419)
|.....++++.|||+..
T Consensus 400 ~~~~~~~d~~~~~e~~~ 416 (443)
T PTZ00363 400 IFISKSYDATSHFESAT 416 (443)
T ss_pred EEEeCCCCccccHHHHH
Confidence 99999999999999544
No 3
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-56 Score=395.24 Aligned_cols=416 Identities=63% Similarity=1.066 Sum_probs=379.8
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCC-CCCCCCCCCCcceEEccCcce
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-EQPPAHLGSSRDYNVDMIPKF 79 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~-~~~~~~~g~~~~~~~d~gp~~ 79 (419)
|+++|||||+|+|+..+..+..|+..|.+|+++|||+++||-.+|.+..++.++|+.. ...+..+|.++.|++|+.|++
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~ 80 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF 80 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence 8889999999999999999999999999999999999999999999999999999833 557778889999999999999
Q ss_pred eecCchhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768 80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (419)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
++..+.++++|+..++.+|++|..++..+.|.+|+..++|.++.+++.+.++++++|+.+++|+.++.++.+.++..++.
T Consensus 81 lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~ 160 (440)
T KOG1439|consen 81 LMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQG 160 (440)
T ss_pred hhccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred ccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHH
Q 014768 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239 (419)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~ 239 (419)
++....++.+++.++++.....++..++++++..+.|...|..+++.++.+|..|++.| |.++++||++|.++|+|.|+
T Consensus 161 ~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y-g~~~ylyP~yGlgEL~QgFa 239 (440)
T KOG1439|consen 161 YDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY-GKSPYLYPLYGLGELPQGFA 239 (440)
T ss_pred cccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc-CCCcceecccCcchhhHHHH
Confidence 77777799999999999888888888888888888899999999999999999999999 88889999999999999999
Q ss_pred HHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccccccCeeEEEEEEecCCCCCCCCCCeEE
Q 014768 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ 319 (419)
Q Consensus 240 ~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (419)
|.++..||++++|.++.+|...+++++.+|+..+++..++.||+.++|.|+++.....+.|.++++.||++..++.++.+
T Consensus 240 RlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpSY~~~~~k~vg~viR~iCIl~hpi~~t~~~~S~q 319 (440)
T KOG1439|consen 240 RLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPSYFPQKVKKVGQVIRAICILSHPIPNTNDAESAQ 319 (440)
T ss_pred HHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCccchHHHHhhhheeeeeEEecCCcCcCCccceee
Confidence 99999999999999999999855799999999889999999999999998776555678899999999998877778889
Q ss_pred EEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceeeeeccccccCCCCCCCcE
Q 014768 320 VILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNC 399 (419)
Q Consensus 320 i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 399 (419)
+++|+.+..+...+|++..|+....||+|+++.+++|..++.+++.++.++++...++.+.|..+-+.++-.-.+-.+++
T Consensus 320 iiipq~q~~rksdi~v~~~ss~~~vcpeG~yia~vsT~~Et~~pE~ei~~~lellg~~~e~Fv~i~d~y~p~~~~~~~~~ 399 (440)
T KOG1439|consen 320 IIIPQFQVGRKSDIYVFGLSSAHNVCPEGKYIAYVSTTVETPNPEVEILPGLELLGPIDEKFVGISDLYEPVDDGTESNI 399 (440)
T ss_pred EEechhhhCCcccEEEEEeccCCCcCCCceEEEEEEeccCCCChHHhhhhHHHhhCchhhhhccccceEEecccCccceE
Confidence 99999999889999999999989999999999999999998899999999888877887877777766654434456789
Q ss_pred EEecCCCCCCchHHHhhh
Q 014768 400 FISTVTMMPQHTLSQLSR 417 (419)
Q Consensus 400 ~~~~~~tp~~d~~~~~~~ 417 (419)
.....++.+.+|+..+..
T Consensus 400 f~s~syDaT~HFet~~~d 417 (440)
T KOG1439|consen 400 FISTSYDATTHFETTVYD 417 (440)
T ss_pred EEEcccCCCCchHHHHHH
Confidence 999999999999987654
No 4
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-45 Score=324.05 Aligned_cols=407 Identities=43% Similarity=0.728 Sum_probs=332.8
Q ss_pred CCCc--ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcc
Q 014768 1 MDEE--YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPK 78 (419)
Q Consensus 1 m~~~--~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~ 78 (419)
|+.. |||+|+|+|+..++.+++|+.+|.+|+++|+|+.+|+-.++.+..++..+|+.....+.-.+.++.|++|+.|.
T Consensus 1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK 80 (434)
T COG5044 1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPK 80 (434)
T ss_pred CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchh
Confidence 5544 99999999999999999999999999999999999999999999998888887655566667788999999999
Q ss_pred eeecCchhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccc
Q 014768 79 FIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE 158 (419)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (419)
+++..+.+.++|++.++.+|++|.++...+.|.+|+..++|.++.+.+.+.++++++|+.+++|++++.++.. .+..++
T Consensus 81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~~~~~ 159 (434)
T COG5044 81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQ 159 (434)
T ss_pred hhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hhhhch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876 444444
Q ss_pred cccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHH
Q 014768 159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF 238 (419)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al 238 (419)
.+..+..++....+.++++....+++.+.++++.. ...|+++++.++.+|+.|++.| |.+|++||++|.++|++.+
T Consensus 160 ~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ld---l~~p~re~~erIl~Y~~Sf~~y-g~~pyLyp~YGl~El~QGF 235 (434)
T COG5044 160 ELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF 235 (434)
T ss_pred hhhhcccHHHHHHHHHccCcchhhhhhhhhhhhcc---ccCCchHHHHHHHHHHHhhccc-CCCcceeeccCchhhhHHH
Confidence 44333445556678899988888889888887654 3457889999999999999999 9999999999999999999
Q ss_pred HHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccccccC---eeEEEEEEec-CCCCCCCC
Q 014768 239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG---RVARAIAIMS-HPIPNTND 314 (419)
Q Consensus 239 ~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~~~~~~~---~~~~~~~~~~-~~l~~~~~ 314 (419)
+|.+...||++++|+++.+|.. ...|.+|..++.+..|..||+.+++.+....... .+.|..+++. |+......
T Consensus 236 aRssav~GgtymLn~~i~ein~--tk~v~~v~~~~~~~ka~KiI~~~~~~~~~~~~~~q~yriiRa~Ci~~~h~~~~~~~ 313 (434)
T COG5044 236 ARSSAVYGGTYMLNQAIDEINE--TKDVETVDKGSLTQKAGKIISSPTYFREDSKSVGQFYRIIRAICILLVHPVPFTTG 313 (434)
T ss_pred HHhhhccCceeecCcchhhhcc--ccceeeeecCcceeecCcccCCcccccccccccchhhhhhHhhhhhhcCccccccc
Confidence 9999999999999999999875 3334566668889999999999998875433222 4667777655 77654444
Q ss_pred CCeEEEEecCCcCCCCCcEEEEEeCCCccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceeeeeccccccCCCC
Q 014768 315 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEP 394 (419)
Q Consensus 315 ~~~~~i~~~~~~~~~~~~~~v~~~s~~~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (419)
....+++|++.++.+.+.+++...++....||+|+++.+++|..++++++.++.++++.+.+..+-+..+-..++ ...+
T Consensus 314 ~ds~~iif~~~~lk~~~~i~v~~lgs~~~~CPEGy~l~yisT~~et~~~e~ei~~~lell~~~~e~~~~~e~iyq-~~ed 392 (434)
T COG5044 314 LDSLQIIFPPFSLKRKNDIQVAGLGSGSEVCPEGYYLAYISTIDETPTPEDEILAALELLGPSVEKFVDVEEIYQ-PDED 392 (434)
T ss_pred cccceeeechhhhcccCceEEEEecCCCCCCCCceEEEEEEeccCCCChHHHHHHHHHhhcchhhccccceeeee-cccc
Confidence 566788899999888889999999988999999999999999887777777777766644443333332211111 0112
Q ss_pred CCCcEEEecCCCCCCchHHHhh
Q 014768 395 SLDNCFISTVTMMPQHTLSQLS 416 (419)
Q Consensus 395 ~~~~i~~~~~~tp~~d~~~~~~ 416 (419)
.+++.+...+.-+.+||+.+-
T Consensus 393 -~~~~~~~~s~De~~~~e~l~~ 413 (434)
T COG5044 393 -TNQVYLSDSVDESSHFESLTY 413 (434)
T ss_pred -cceeEEeccccccccHHHHHH
Confidence 456777777766677877654
No 5
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=2e-37 Score=306.98 Aligned_cols=369 Identities=18% Similarity=0.197 Sum_probs=246.2
Q ss_pred EEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCchh
Q 014768 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGAL 86 (419)
Q Consensus 7 vvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~~ 86 (419)
|||||||++||+||++|+++|++|+||||++++||+++|++.+ +|.||.|++++..++.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~--------------------G~~fD~G~~~~~~~~~~ 60 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD--------------------GFRFDTGPTVITMPEAL 60 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC--------------------CeEEecCCeEEccccHH
Confidence 6999999999999999999999999999999999999999753 79999999999876544
Q ss_pred hHHHHhcC--CcceeeEEEecceeE--EeCCeEEEecCChhhhhccCCCChH--hHHHHHHHHHHHhhccc--------C
Q 014768 87 VRVLIHTD--VTKYLYFKAVDGSFV--YNKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQDYDE--------N 152 (419)
Q Consensus 87 ~~~l~~~~--~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~ 152 (419)
.+++...+ +.+++++.+.++.+. +.+|..+.++.+ .+.+.+.+.+++ +.+.+.+|+..++.... .
T Consensus 61 ~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (502)
T TIGR02734 61 EELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDND-QEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYV 139 (502)
T ss_pred HHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCC-HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44444455 456688888877653 456777777743 555554443332 22334444443332211 0
Q ss_pred CCCcc----------ccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCC
Q 014768 153 DPKTH----------EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS 222 (419)
Q Consensus 153 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 222 (419)
+.... ........++.++++++..++.++.++.. ...+........+.. . .. + ....+ ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~-~~~~~g~~p~~~~~~--~---~l-~-~~~~~--~~ 209 (502)
T TIGR02734 140 PFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSF-HALFLGGNPFRTPSI--Y---AL-I-SALER--EW 209 (502)
T ss_pred CCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcc-cceeeccCcccchHH--H---HH-H-HHHHh--hc
Confidence 00000 00012457778888877666766665542 111111111111111 1 11 0 01112 23
Q ss_pred eEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC-------Ccccc-
Q 014768 223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL-------PNKVR- 293 (419)
Q Consensus 223 ~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~-------~~~~~- 293 (419)
+.++|.||+..++++|.+.++++|++|+++++|++|..+ ++++++|++ +|+++.||.||++++.. +....
T Consensus 210 g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~ 288 (502)
T TIGR02734 210 GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR 288 (502)
T ss_pred eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc
Confidence 567999999999999999999999999999999999984 888889988 78889999999998753 11100
Q ss_pred ----c------cC-eeEEEEEEec---CCCCCCCCCCeEEEEe-c-----------CCcCCCCCcEEEEEeCCC-ccccC
Q 014768 294 ----K------VG-RVARAIAIMS---HPIPNTNDSHSVQVIL-P-----------QKQLGRRSDMYLFCCSYS-HNVAP 346 (419)
Q Consensus 294 ----~------~~-~~~~~~~~~~---~~l~~~~~~~~~~i~~-~-----------~~~~~~~~~~~v~~~s~~-~~~aP 346 (419)
. .+ .....+..++ .+++.. ..+.+++ + .+.+++++++|++++|.. |++||
T Consensus 289 ~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP 365 (502)
T TIGR02734 289 RYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQL---AHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAP 365 (502)
T ss_pred cccccccccCCcCCeeeEEEEeeccccCcCCCc---CceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCC
Confidence 0 00 0111122233 122111 1112222 1 134567899999999988 99999
Q ss_pred CCcEEEEEEeeccCCCccccchhHHhhcccccceee-eeccccccC-CCCCCCcEEEecCCCCCCchHHHhhh
Q 014768 347 KGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFY-DIYDRYEPV-NEPSLDNCFISTVTMMPQHTLSQLSR 417 (419)
Q Consensus 347 ~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~i~~~~~~tp~~d~~~~~~~ 417 (419)
+|++++++.++++... .. -..|++.++++. +++++++++ .|+++++|++.++.|| .||++.++.
T Consensus 366 ~G~~~~~~~~~~~~~~----~~--~~~~~~~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP-~t~~~~~~~ 431 (502)
T TIGR02734 366 PGCENLYVLAPVPHLG----TA--DVDWSVEGPRYRDRILAYLEERAIPGLRDRIVVERTFTP-ADFRDRYNA 431 (502)
T ss_pred CCCccEEEEEeCCCCC----CC--CCCcHHHHHHHHHHHHHHHHHhcCCChhHheEEEEEcCH-HHHHHhcCC
Confidence 9999999998775320 11 125877788888 999999998 7999999999999999 999998764
No 6
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=1.2e-36 Score=300.47 Aligned_cols=372 Identities=14% Similarity=0.143 Sum_probs=233.7
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec--
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA-- 82 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~-- 82 (419)
.||||||||++||+||++|+++|++|+|+||++.+||++++++.+ +|.||+|++++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~--------------------G~~fD~G~~~~~~~~ 61 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR--------------------GFTFDVGATQVAGLE 61 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC--------------------CEEEeecceEEEecC
Confidence 589999999999999999999999999999999999999999753 7999999999875
Q ss_pred Cch-hhHHHHhcCCcceeeEEEeccee--EEeCC-eEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcc-------c
Q 014768 83 NGA-LVRVLIHTDVTKYLYFKAVDGSF--VYNKG-KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD-------E 151 (419)
Q Consensus 83 ~~~-~~~~l~~~~~~~~~~~~~~~~~~--~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 151 (419)
++. +...+.++++... .+...++.+ .+.+| ..+.++. +.+.+.+++.+.+. .+ .+|+..+.... .
T Consensus 62 ~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~-d~~~~~~~l~~~~p-~~-~~~~~~~~~~~~~~~~~~~ 137 (492)
T TIGR02733 62 PGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWH-DPDRWQKERERQFP-GS-ERFWQLCSQLHQSNWRFAG 137 (492)
T ss_pred cCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeec-CHHHHHHHHHHHCC-Ch-HHHHHHHHHHHHHHHHHhh
Confidence 233 3333434565421 133345443 35666 4566663 46666554443321 11 11222221110 0
Q ss_pred CCC----Ccc---------------ccccCCcccHHHHHHHcC--CChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHH
Q 014768 152 NDP----KTH---------------EGMDLTRVTTRELIAKYG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKL 210 (419)
Q Consensus 152 ~~~----~~~---------------~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (419)
..+ ... ....+...++.++++.++ .++.++.++.....++.. .+..+.......
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~-----~~~~~~~~~~~~ 212 (492)
T TIGR02733 138 RDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQ-----EDADETAALYGA 212 (492)
T ss_pred cCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhcc-----CChhhhhHHHHH
Confidence 000 000 000123467788887763 455666666533322221 111111111111
Q ss_pred HHHHhhhccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC-----eEEEcCEEEeC
Q 014768 211 YAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-----ETAKCKKVVCD 284 (419)
Q Consensus 211 ~~~~~~~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g-----~~i~ad~VV~~ 284 (419)
.+..... ...+.++++||++.|+++|++.++++|++|+++++|++|.. +++++.+|.+ ++ +++.||+||+|
T Consensus 213 ~~~~~~~--~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~ 289 (492)
T TIGR02733 213 TVLQMAQ--APHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVAN 289 (492)
T ss_pred HHhhccc--cCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEEC
Confidence 1111111 12346789999999999999999999999999999999999 4787777776 54 68999999999
Q ss_pred CCCCC--cccc-------------c--cC-eeEEEEEEecCCCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCCccccC
Q 014768 285 PSYLP--NKVR-------------K--VG-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAP 346 (419)
Q Consensus 285 ~~~~~--~~~~-------------~--~~-~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~~~~aP 346 (419)
+++.. +.+. . .+ .....+..++...+..+........+.+ ..++|++.++..+++||
T Consensus 290 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~d~~~aP 364 (492)
T TIGR02733 290 LPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH-----QGSLFVSISQEGDGRAP 364 (492)
T ss_pred CCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC-----CceEEEEeCCccccCCC
Confidence 87531 1100 0 00 0111223333322111111112222321 23788888766689999
Q ss_pred CCcEEEEEEeeccCCCccccchhHHhhcccccceee-eeccccccCCCCCCCcEEEecCCCCCCchHHHhhh
Q 014768 347 KGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFY-DIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLSR 417 (419)
Q Consensus 347 ~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~tp~~d~~~~~~~ 417 (419)
+|+++++++++++. .+|..+.+ .+|++.++++. ++++++|++.|+++++|++.++.|| .||++.++.
T Consensus 365 ~G~~~l~~~~~~~~-~~~~~~~~--~~y~~~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP-~t~~~~~~~ 432 (492)
T TIGR02733 365 QGEATLIASSFTDT-NDWSSLDE--EDYTAKKKQYTQTIIERLGHYFDLLEENWVHVELATP-RTFERWTGR 432 (492)
T ss_pred CCceEEEEEcCCCH-HHHcCCCH--HHHHHHHHHHHHHHHHHHHHHCCCccccEEEEEccCC-chHHHHhCC
Confidence 99999988877643 22322222 36888888899 9999999999999999999999999 999998875
No 7
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=3.8e-36 Score=296.48 Aligned_cols=375 Identities=19% Similarity=0.209 Sum_probs=241.0
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC-
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN- 83 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~- 83 (419)
+||||||||++||+||++|+++|++|+||||++.+||++++++.+ +|.||.|++++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~--------------------G~~fd~g~~~~~~~~ 60 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFERE--------------------GYRFDVGASMIFGFG 60 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccC--------------------CEEEEecchhheecC
Confidence 699999999999999999999999999999999999999998753 89999999997632
Q ss_pred -----chhhHHHHhcCCcceeeEEEeccee--EEeCCeEEEecCChhhhhccCCCChH--hHHHHHHHHHHHhhccc---
Q 014768 84 -----GALVRVLIHTDVTKYLYFKAVDGSF--VYNKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQDYDE--- 151 (419)
Q Consensus 84 -----~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--- 151 (419)
..+.+.+...+ +.+++...+..+ .+++|..+.++. +.+.+.+.+.+.+ +...+++|+..++....
T Consensus 61 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~-d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~ 137 (493)
T TIGR02730 61 DKGTTNLLTRALAAVG--RKLETIPDPVQIHYHLPNGLNVKVHR-EYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLN 137 (493)
T ss_pred CcccccHHHHHHHHcC--CcccccCCCccEEEECCCCeeEeeec-CHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Confidence 22333333223 224444333333 345676777774 5777766655543 22334555444332110
Q ss_pred -C------CCCcc------------ccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHH
Q 014768 152 -N------DPKTH------------EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA 212 (419)
Q Consensus 152 -~------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (419)
. .+... ....+...++.++++++..++.++.++......+........+..... ..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~---~~-- 212 (493)
T TIGR02730 138 SMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAG---MV-- 212 (493)
T ss_pred hhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHH---Hh--
Confidence 0 00000 000112356677787777777777766532222111100111111110 00
Q ss_pred HHhhhccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc-
Q 014768 213 ESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN- 290 (419)
Q Consensus 213 ~~~~~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~- 290 (419)
+..+ ...+.++|.||+..++++|++.++++|++|+++++|++|.. +++++.+|++ +|+++.||.||++++.+..
T Consensus 213 --~~~~-~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 213 --FSDR-HYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred --hccc-ccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence 1111 12356799999999999999999999999999999999998 4889999998 7888999999999876521
Q ss_pred --ccc-----c----------cC-eeEEEEEEecCCCCCCCCCCeEEEEecCC-c-CCCCCcEEEEEeCCC-ccccCCCc
Q 014768 291 --KVR-----K----------VG-RVARAIAIMSHPIPNTNDSHSVQVILPQK-Q-LGRRSDMYLFCCSYS-HNVAPKGK 349 (419)
Q Consensus 291 --~~~-----~----------~~-~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~-~~~~~~~~v~~~s~~-~~~aP~G~ 349 (419)
.+. . .+ .....+..++.++..... ..+++.++.. . ....+++|+++||.. |++||+|+
T Consensus 289 ~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~ 367 (493)
T TIGR02730 289 GKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGT-ECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGH 367 (493)
T ss_pred HHhCCccccchhhHHHHhhccCCCceEEEEEEecCccCCCCC-CccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCc
Confidence 110 0 00 011222333333211111 1122323321 1 123578999999988 99999999
Q ss_pred EEEEEEeeccCCCccccchhHHhhcccccceee-eeccccccCCCCCCCcEEEecCCCCCCchHHHhh
Q 014768 350 FIAFVSTEAETDHPQTELKPGIDLLGPVDEIFY-DIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLS 416 (419)
Q Consensus 350 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~tp~~d~~~~~~ 416 (419)
+++++.++.+. ..|..+.+ .+|++.++++. +++++++++.|+++++|+++++.|| .+|++.++
T Consensus 368 ~~i~~~~~~~~-~~w~~~~~--~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP-~t~~r~~~ 431 (493)
T TIGR02730 368 HIIHTFTPSSM-EDWQGLSP--KDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTP-RTHRRFLG 431 (493)
T ss_pred EEEEEecCCCh-hhccCCCc--HHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCc-hhHHHHhC
Confidence 99888776533 22333322 36887888899 9999999988999999999999999 99986443
No 8
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.2e-37 Score=298.66 Aligned_cols=369 Identities=19% Similarity=0.261 Sum_probs=224.4
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA 82 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~ 82 (419)
+.+||||||||++||+||++||++|++|+||||++.+||++++++.. +|.||+||+++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~--------------------Gf~fd~G~~~~~~ 61 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD--------------------GFRFDTGPSWYLM 61 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------ceEeccCcceeec
Confidence 46899999999999999999999999999999999999999999864 7999999999887
Q ss_pred CchhhHHHHhcC-Ccce-eeEEEecceeE--EeCCeEEEecCChhhhhccCCCChH--hHHHHHHHHHHHhh-cc---cC
Q 014768 83 NGALVRVLIHTD-VTKY-LYFKAVDGSFV--YNKGKVHKVPATDMEALKSPLMGIF--EKRRARKFFIYVQD-YD---EN 152 (419)
Q Consensus 83 ~~~~~~~l~~~~-~~~~-~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~---~~ 152 (419)
+... ..+.+++ +..+ +.+...++.+. +.+|..+.+..+ .+.+...+.+.. +...+.+++..+.. +. ..
T Consensus 62 ~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 139 (487)
T COG1233 62 PDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTD-LEATAELLESLEPGDGEALARYLRLLARLYELLAAL 139 (487)
T ss_pred CchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCC-HHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh
Confidence 7543 4444445 6655 77777777764 345777877743 555554443321 22233333332222 10 00
Q ss_pred CCC-cccc---c-----------cCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhh
Q 014768 153 DPK-THEG---M-----------DLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIAR 217 (419)
Q Consensus 153 ~~~-~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (419)
... .... . .+...+..+++.....++.++..+...... .. ..|.... .+..++ +...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~-~~----~~p~~~~--a~~~~~-~~~~ 211 (487)
T COG1233 140 LLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVY-GG----APPSTPP--ALYLLL-SHLG 211 (487)
T ss_pred cCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHh-cC----CCCCchh--HHHHHH-HHhc
Confidence 000 0000 0 011223333333332223333333321111 10 1111110 011111 1111
Q ss_pred ccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC-Cccc-cc
Q 014768 218 FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL-PNKV-RK 294 (419)
Q Consensus 218 ~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~-~~~~-~~ 294 (419)
...++.||+|||++|+++|++.++++||+|+++++|++|.+ ++|+.+++++ +|+.+++|.||+|++.. +..+ ..
T Consensus 212 --~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~ 288 (487)
T COG1233 212 --LSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADPALLARLLGE 288 (487)
T ss_pred --ccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCchhhhhhhhhh
Confidence 24567899999999999999999999999999999999999 5888777777 56689999999999762 1111 00
Q ss_pred c-C-----eeEEEEEEecC--CCCCC--CCCCeEEEEecCC----------cCCCCCcEEEEEeCCC-ccccCCCcEEEE
Q 014768 295 V-G-----RVARAIAIMSH--PIPNT--NDSHSVQVILPQK----------QLGRRSDMYLFCCSYS-HNVAPKGKFIAF 353 (419)
Q Consensus 295 ~-~-----~~~~~~~~~~~--~l~~~--~~~~~~~i~~~~~----------~~~~~~~~~v~~~s~~-~~~aP~G~~~l~ 353 (419)
. . ...+....+.. .+... ...+...++..+. .....+.+|+++||.. |++||+|++.++
T Consensus 289 ~~~~~~~~~~~~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~ 368 (487)
T COG1233 289 ARRPRYRGSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTF 368 (487)
T ss_pred hhhhccccchhhhhHHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCccee
Confidence 0 0 00010011111 11110 0011112211111 1111126899999998 999999998333
Q ss_pred EE-eeccCCCccccchhHHhhcccccceee-eeccccccCCCCCCCcEEEecCCCCCCchHHHhh
Q 014768 354 VS-TEAETDHPQTELKPGIDLLGPVDEIFY-DIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLS 416 (419)
Q Consensus 354 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~tp~~d~~~~~~ 416 (419)
.. .+.+ ...+|++.++.+. . ++.+++..|+++++|+.++..|| .|+++.++
T Consensus 369 ~~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~iv~~~~~tp-~~~e~~~~ 421 (487)
T COG1233 369 AQLVPVP----------SLGDYDELKESLADA-IDALEELAPGLRDRIVAREVLTP-LDLERYLG 421 (487)
T ss_pred eeeeecC----------cCCChHHHHHHHHHH-HHHHhhcCCCcccceeEEEEeCh-HHHHHhcC
Confidence 22 2221 1235777777777 6 77788888999999999999999 99999876
No 9
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.2e-35 Score=259.23 Aligned_cols=346 Identities=31% Similarity=0.573 Sum_probs=270.5
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHH-------hhc---C----------C-C--
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK-------RFR---G----------N-E-- 59 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~-------~~~---~----------~-~-- 59 (419)
++|||||||+|+...+.|+..++.|.+|+.+|.|+++||.++++....+++ .+. + + .
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~~~ 86 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNAPP 86 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCCCC
Confidence 469999999999999999999999999999999999999999998762221 110 0 0 0
Q ss_pred --------------C--CC------CCC----------CCCcceEEccCcceeecCchhhHHHHhcCCcceeeEEEecce
Q 014768 60 --------------Q--PP------AHL----------GSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGS 107 (419)
Q Consensus 60 --------------~--~~------~~~----------g~~~~~~~d~gp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 107 (419)
. .+ .+. ..++.|++|+.|+++++.|.++++|+++++.+|.+|+.++..
T Consensus 87 t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLvpkilys~g~lI~lLikS~vsrYaEFK~V~r~ 166 (547)
T KOG4405|consen 87 TPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLVPKILYSAGELIQLLIKSNVSRYAEFKNVDRI 166 (547)
T ss_pred CCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhhhHHHhcccHHHHHHHHhcchhhhhhhccchh
Confidence 0 00 010 245779999999999999999999999999999999999999
Q ss_pred eEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcc-cCCCCccccccCCcccHHHHHHHcCCChhHHHHHHH
Q 014768 108 FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD-ENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH 186 (419)
Q Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 186 (419)
+.+..|.+..+|+++.+.|.++-+++.+|+.+++|+.++..|. +.++.... +....+|.+|++..++.+.++.++.+
T Consensus 167 l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~--~~~e~~F~EyL~~~rltp~lqs~vl~ 244 (547)
T KOG4405|consen 167 LAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYV--EFRERPFSEYLKTMRLTPKLQSIVLH 244 (547)
T ss_pred hcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHH--HhhcCcHHHHHHhcCCChhhHHHHHH
Confidence 9888999999999999999999999999999999999999984 22332222 34678999999999999999999988
Q ss_pred HHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcE
Q 014768 187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKV 266 (419)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v 266 (419)
.+++.... ...+.+.+.+...|+.++++| |+.||+||.+|.+.|+++|+|.++..|+.+.++.+|+.|..| ++..
T Consensus 245 aIaM~~~~---~~tt~eGm~at~~fl~slGrf-gntpfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivld-k~s~ 319 (547)
T KOG4405|consen 245 AIAMLSES---QLTTIEGMDATKNFLTSLGRF-GNTPFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLD-KESL 319 (547)
T ss_pred HHHhcCcc---cccHHHHHHHHHHHHHHhhcc-CCCcceeeccCCCcchHHHHHHHHHhcceEEeccchhheeec-cccc
Confidence 99886533 234678889999999999999 999999999999999999999999999999999999999985 4433
Q ss_pred E---EEEeCCeEEEcCEEEeCCCCCCcccccc---CeeEEEEEEecCCCCCCCCCCeEEE-EecCCcCCCCCcEEEEEeC
Q 014768 267 V---GVTSEGETAKCKKVVCDPSYLPNKVRKV---GRVARAIAIMSHPIPNTNDSHSVQV-ILPQKQLGRRSDMYLFCCS 339 (419)
Q Consensus 267 ~---gV~~~g~~i~ad~VV~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~~~~~~~~~~~v~~~s 339 (419)
. ++...|+++.|+++|++..|.|+.+.+. ..+.|.+.+.+.++...+......+ ..+..+ |....+.+...+
T Consensus 320 ~~~~~l~s~g~ri~~k~~v~s~~y~pe~~~~~~~~K~Israv~itd~sil~~e~~q~~~ll~~~~~e-pg~~avr~iel~ 398 (547)
T KOG4405|consen 320 DCKAILDSFGQRINAKNFVVSPSYAPEVVCSRVQLKQISRAVLITDPSILKTELDQQLSLLSLLAVE-PGAMAVRLIELC 398 (547)
T ss_pred chhhhHhhhcchhcceeeeecCcccccccccccchhhcceeEEecCccccchhHHhhhhhhhccccC-cchhhHHHHHhh
Confidence 2 3334899999999999999998654432 2467888877777644331111111 112111 222222233334
Q ss_pred CCccccCCCcEEEEEEe
Q 014768 340 YSHNVAPKGKFIAFVST 356 (419)
Q Consensus 340 ~~~~~aP~G~~~l~~~~ 356 (419)
.....||+|+++++...
T Consensus 399 ~~t~tc~kg~yLvhlT~ 415 (547)
T KOG4405|consen 399 SSTMTCPKGTYLVHLTC 415 (547)
T ss_pred cccccCccceEEEEeec
Confidence 44667999999988774
No 10
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.96 E-value=2.8e-28 Score=220.87 Aligned_cols=188 Identities=20% Similarity=0.225 Sum_probs=136.5
Q ss_pred CCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc---c-----
Q 014768 221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN---K----- 291 (419)
Q Consensus 221 ~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~---~----- 291 (419)
..++.||+|||++++.++++.++++|++|.+++.|.+|..+ +|+++||++ ||+++.++.||||++.|.. .
T Consensus 253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~ 331 (561)
T KOG4254|consen 253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA 331 (561)
T ss_pred CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence 45677999999999999999999999999999999999995 899999999 9999999999999987621 1
Q ss_pred cccc---------CeeEE--EEEEec----C--CCCCCCCCCeEEEEecC--------------CcC-CCCCcEEEEEeC
Q 014768 292 VRKV---------GRVAR--AIAIMS----H--PIPNTNDSHSVQVILPQ--------------KQL-GRRSDMYLFCCS 339 (419)
Q Consensus 292 ~~~~---------~~~~~--~~~~~~----~--~l~~~~~~~~~~i~~~~--------------~~~-~~~~~~~v~~~s 339 (419)
++.. +++.+ .-..+. + |++. ....+.+.. ..+ .+.|.+++++||
T Consensus 332 LPeef~i~q~d~~spv~k~~~psFl~~~~~~~~plph----~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS 407 (561)
T KOG4254|consen 332 LPEEFVIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPH----HGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPS 407 (561)
T ss_pred CCchhhhhhcccccccccccCcceeecCCCCCCCCCc----cceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccc
Confidence 1111 11111 000011 1 1111 111121111 112 356899999999
Q ss_pred CC-ccccCCCcEEEEEEeeccCCCccccchhHHhhcccccceee-eeccccccCCCCCCCcEEEecCCCCCCchHHHhhh
Q 014768 340 YS-HNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFY-DIYDRYEPVNEPSLDNCFISTVTMMPQHTLSQLSR 417 (419)
Q Consensus 340 ~~-~~~aP~G~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~tp~~d~~~~~~~ 417 (419)
.. |+.||+|+|++++.++... ..|+...+. .+++.++++. +++..+|+++|++++.|+..++.|| .|.++-+.+
T Consensus 408 ~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~--eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP-~t~qr~l~~ 483 (561)
T KOG4254|consen 408 SLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKG--EYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTP-PTHQRFLGR 483 (561)
T ss_pred ccCCCcCCCCceEEEEeccCCc-cccccCCcc--cchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCC-chhhHHhcC
Confidence 98 9999999999999886533 222222111 3356789999 9999999989999999999999999 998887653
No 11
>PRK07233 hypothetical protein; Provisional
Probab=99.93 E-value=5e-24 Score=208.18 Aligned_cols=250 Identities=21% Similarity=0.254 Sum_probs=156.1
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCc-
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG- 84 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~- 84 (419)
+|||||||++||+||+.|+++|++|+|+|+++++||+++++..+ ++.+|.|.+++....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~--------------------g~~~d~g~~~~~~~~~ 60 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFG--------------------GLPIERFYHHIFKSDE 60 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccC--------------------CcchhhhhhhhccccH
Confidence 58999999999999999999999999999999999999988642 688899988876544
Q ss_pred hhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccccCCc
Q 014768 85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTR 164 (419)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (419)
.+.+++.+.++...+.+...... .+.+|....++ +....+....+.+.++ +......+ .... .. ....+..
T Consensus 61 ~~~~l~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~-~~---~~~~~~~ 131 (434)
T PRK07233 61 ALLELLDELGLEDKLRWRETKTG-YYVDGKLYPLG-TPLELLRFPHLSLIDK--FRLGLLTL-LARR-IK---DWRALDK 131 (434)
T ss_pred HHHHHHHHcCCCCceeeccCceE-EEECCeEecCC-CHHHHHcCCCCCHHHH--HHhHHHHH-hhhh-cc---ccccccc
Confidence 45666666787655444332222 23355544332 2122222222222222 11111111 1110 00 0012356
Q ss_pred ccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccC-CCeEEEecCCcCcHHHHHHHHHH
Q 014768 165 VTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-GSPYIYPLYGLGELPQAFARLSA 243 (419)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~p~gG~~~l~~al~~~~~ 243 (419)
.++.+|+++...++....++.+...........+.++...+..+.... ...... ...+.+|+||++.++++|++.++
T Consensus 132 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~ 209 (434)
T PRK07233 132 VPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRG--NRRYSLFGEKLGYLEGGFATLIDALAEAIE 209 (434)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhh--ccccccCCceEeccCCCHHHHHHHHHHHHH
Confidence 889999988754443445555443322222211222222222221110 111101 22477999999999999999999
Q ss_pred HcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768 244 VYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (419)
Q Consensus 244 ~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~ 287 (419)
+.|++|++|++|++|+.+ +++++++..+++++.||+||++.+.
T Consensus 210 ~~g~~v~~~~~V~~i~~~-~~~~~~~~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 210 ARGGEIRLGTPVTSVVID-GGGVTGVEVDGEEEDFDAVISTAPP 252 (434)
T ss_pred hcCceEEeCCCeeEEEEc-CCceEEEEeCCceEECCEEEECCCH
Confidence 999999999999999984 7777777778889999999998754
No 12
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.93 E-value=4.5e-24 Score=201.33 Aligned_cols=311 Identities=15% Similarity=0.209 Sum_probs=194.5
Q ss_pred eEEEECCCchHHHHhhccccCC--CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~ 83 (419)
.++|||||++||+||++|+++| .+|+|||+.+++||..+|+..+ +|.||.||+.+...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~--------------------G~~~e~G~~~f~~~ 61 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID--------------------GFLFERGPHHFLAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC--------------------CEEEeechhheecc
Confidence 6899999999999999999999 9999999999999999999754 89999999988766
Q ss_pred -chhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccccC
Q 014768 84 -GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDL 162 (419)
Q Consensus 84 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (419)
..+++++.++++++.+.+......|.|.+|+.+.+|....-.+...... ++... ...+..+.... . +. ..
T Consensus 62 ~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~--~~~~~---~~~~~~~~~~~-~-~~--~~ 132 (444)
T COG1232 62 KEEILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLS--SEAGL---ARALQEFIRPK-S-WE--PK 132 (444)
T ss_pred hHHHHHHHHHhCcHHhhccCCcccceEeeCCcEEECCccceeecCCcccc--chhHH---HHHHHhhhccc-C-CC--CC
Confidence 5677888888999876655444457888999999986532222222111 11112 22222221110 0 00 23
Q ss_pred CcccHHHHHHHcCCChhH-HHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccC-----------------CCeE
Q 014768 163 TRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-----------------GSPY 224 (419)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------------~~~~ 224 (419)
.+.++.+|+++. +..++ ..++.+.+.-...++..+-++.. .+..+......| + ...+
T Consensus 133 ~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~---~~p~~~~~e~~~-~s~~~g~~~~~~~~~~~~~~~~ 207 (444)
T COG1232 133 QDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAA---AFPILARAERKY-GSLLRGAKKEGLPKQSLKKEKF 207 (444)
T ss_pred CCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHH---hcchhhhhhhhh-cchhhhhhhccCcccccccccc
Confidence 678999998876 33443 34555544322211111111110 111111111111 1 1246
Q ss_pred EEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC--Cccccc--------
Q 014768 225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL--PNKVRK-------- 294 (419)
Q Consensus 225 ~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~--~~~~~~-------- 294 (419)
.+.+||++.++++|++.+..+ |+++++|++|..+ ....+.+..+|+.+.||.||+++... +..+..
T Consensus 208 ~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~-~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~~~~~~~ 283 (444)
T COG1232 208 GYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK-GAGKTIVDVGGEKITADGVISTAPLPELARLLGDEAVSKAAK 283 (444)
T ss_pred cccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc-CCccEEEEcCCceEEcceEEEcCCHHHHHHHcCCcchhhhhh
Confidence 788999999999999988655 9999999999984 55555666689999999999998542 111111
Q ss_pred ---cCeeEEEEEEecCC-CCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCC-ccccCCCcEEEEEEeecc
Q 014768 295 ---VGRVARAIAIMSHP-IPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYS-HNVAPKGKFIAFVSTEAE 359 (419)
Q Consensus 295 ---~~~~~~~~~~~~~~-l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~-~~~aP~G~~~l~~~~~~~ 359 (419)
...+...+..+.++ .+.. .+..++.+++... ....+..+|.. |...|+|++++++..-.+
T Consensus 284 ~~~~~s~~~vv~~~~~~~~~~~--~~~~g~~iad~~~---~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~ 348 (444)
T COG1232 284 ELQYTSVVTVVVGLDEKDNPAL--PDGYGLLIADDDP---YILAITFHSNKWPHEAPEGKTLLRVEFGGP 348 (444)
T ss_pred hccccceEEEEEEeccccccCC--CCceEEEEecCCC---cceeEEEecccCCCCCCCCcEEEEEEeecC
Confidence 01122233334442 2211 2344555665432 13445556666 999999999999876543
No 13
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.90 E-value=1.3e-21 Score=192.60 Aligned_cols=247 Identities=14% Similarity=0.133 Sum_probs=153.7
Q ss_pred ceEEEECCCchHHHHhhccccC----CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCccee
Q 014768 5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~ 80 (419)
.||+|||||++||+||++|+++ |++|+|+|+++++||+++|.+.+ ++.+|.|++++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~--------------------g~~~e~G~~~~ 62 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED--------------------GYLIERGPDSF 62 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC--------------------CEEEecCcccc
Confidence 5899999999999999999999 99999999999999999998642 78999999999
Q ss_pred ecCch-hhHHHHhcCCcceeeEEEecceeEEeC-CeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccc
Q 014768 81 IANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNK-GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE 158 (419)
Q Consensus 81 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (419)
....+ +.+++.+.++............+.+.+ |..+.+|.+..+.+...+.++..+ +...... +....
T Consensus 63 ~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~----- 132 (462)
T TIGR00562 63 LERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGK--LRAGMDF---IRPAS----- 132 (462)
T ss_pred ccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhh--HHhhhhh---ccCCC-----
Confidence 87655 666666678876543222233445555 777777755344444444443222 1111111 11100
Q ss_pred cccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHH-------HHHh------------hhcc
Q 014768 159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLY-------AESI------------ARFQ 219 (419)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------------~~~~ 219 (419)
...+.++.+|+++..-+.....++.+...-....+..+.++..++.++... ...+ ..|.
T Consensus 133 --~~~d~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 210 (462)
T TIGR00562 133 --PGKDESVEEFVRRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTA 210 (462)
T ss_pred --CCCCcCHHHHHHHhcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccc
Confidence 113478999998763333334445444322111111011111111111100 0000 0010
Q ss_pred -C-CCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768 220 -G-GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (419)
Q Consensus 220 -g-~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~ 287 (419)
+ ...+.+++||++.|+++|++.+. .++|++|++|++|..+ ++++ .|++ +|+++.||+||++...
T Consensus 211 ~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 211 KKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR-GSNY-TLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred cccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec-CCcE-EEEECCCcEEEcCEEEECCCH
Confidence 0 11256789999999999998874 2789999999999984 5554 3555 6778999999998743
No 14
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.90 E-value=9.1e-22 Score=193.16 Aligned_cols=314 Identities=13% Similarity=0.187 Sum_probs=174.3
Q ss_pred eEEEECCCchHHHHhhccccCC--CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~ 83 (419)
+|+|||||++||+||+.|+++| ++|+|+|+++++||+++|.+.+ ++.+|+|++++...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~--------------------g~~~d~G~~~~~~~ 61 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKD--------------------GFPIELGPESFLAR 61 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeC--------------------CeEEecChHHhcCC
Confidence 7999999999999999999988 8999999999999999998643 68899999877655
Q ss_pred c-hhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCC-----CChHhHHHHHHHHHHHhhcccCCCCcc
Q 014768 84 G-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPL-----MGIFEKRRARKFFIYVQDYDENDPKTH 157 (419)
Q Consensus 84 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (419)
+ .+.+++.+.++............+.+.+|+.+.+|......+...+ ..++.... ++ +...... .+. .
T Consensus 62 ~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~--~~~-~ 135 (451)
T PRK11883 62 KPSAPALVKELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIG--KL-RAAADLR--PPR-W 135 (451)
T ss_pred cHHHHHHHHHcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHH--HH-HhhCccc--CCC-C
Confidence 4 3566666678765432221122355667777666532111110000 01111000 00 0001110 000 0
Q ss_pred ccccCCcccHHHHHHHcCCChhH-HHHHHHHH-hhccCCCCCCCcHHHHHHHHHHHH-------HHhh----hcc--CCC
Q 014768 158 EGMDLTRVTTRELIAKYGLDDNT-IDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYA-------ESIA----RFQ--GGS 222 (419)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~--g~~ 222 (419)
. ...+.++.+|+++. +++.+ ..++.+.. .++.. +..+.++...+..+..+. ..+. ... ...
T Consensus 136 ~--~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T PRK11883 136 K--PGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAG-DIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKG 211 (451)
T ss_pred C--CCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecC-ChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCC
Confidence 1 13568899999764 44443 44444333 22221 111111111111111111 0000 000 122
Q ss_pred eEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC--Cccc-------
Q 014768 223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL--PNKV------- 292 (419)
Q Consensus 223 ~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~--~~~~------- 292 (419)
.+.+++||++.++++|++.+.+. +|++|++|++|..+ ++.+ .|.+ +|+++.||+||++++.. ....
T Consensus 212 ~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~-~~~~-~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~~~~~ 287 (451)
T PRK11883 212 VFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS-GDGY-EIVLSNGGEIEADAVIVAVPHPVLPSLFVAPPAFA 287 (451)
T ss_pred ceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc-CCeE-EEEECCCCEEEcCEEEECCCHHHHHHhccChhHHH
Confidence 45689999999999999877543 89999999999984 6554 4555 88899999999987532 0000
Q ss_pred --c--ccCeeEEEEEEecCCCCCCCCCCeEEEEecCCcCCCCCcEEEEEeCCC-ccccCCCcEEEEEEee
Q 014768 293 --R--KVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYS-HNVAPKGKFIAFVSTE 357 (419)
Q Consensus 293 --~--~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s~~-~~~aP~G~~~l~~~~~ 357 (419)
. .+..+.+.+...++++... .....++++... ..+...+...+.. +..+|+|+.++.....
T Consensus 288 ~~~~~~~~~~~~v~l~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~ 353 (451)
T PRK11883 288 LFKTIPSTSVATVALAFPESATNL--PDGTGFLVARNS--DYTITACTWTSKKWPHTTPEGKVLLRLYVG 353 (451)
T ss_pred HHhCCCCCceEEEEEEeccccCCC--CCceEEEecCCC--CCcEEEEEeEcCcCCCCCCCCcEEEEEecC
Confidence 0 0122333333344443111 122233344221 1223334445655 7889999887776553
No 15
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.90 E-value=2.3e-22 Score=197.63 Aligned_cols=246 Identities=13% Similarity=0.205 Sum_probs=150.9
Q ss_pred eEEEECCCchHHHHhhccccC------CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcce
Q 014768 6 DVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~------G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~ 79 (419)
+|+|||||++||+||+.|+++ |++|+|||+++++||+++|.+.. ++.+|+|+++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~--------------------g~~~e~G~~~ 62 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK--------------------DFIMESGADS 62 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC--------------------CEEEecCcHH
Confidence 699999999999999999986 48999999999999999998642 7899999999
Q ss_pred eecCch-hhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChh--------hhhccCCCChHhHHHHHHHHHHHhhcc
Q 014768 80 IIANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDM--------EALKSPLMGIFEKRRARKFFIYVQDYD 150 (419)
Q Consensus 80 ~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (419)
+....+ +.+++.++++...+.+......+.+.+|....+|.... +.+...+.+.. ..+..+ ....
T Consensus 63 i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~----~~~~ 136 (463)
T PRK12416 63 IVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTK--GKIVAL----KDFI 136 (463)
T ss_pred HhcCCHHHHHHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHH--HHHHhh----hhhc
Confidence 876544 55666667887654333333455565666665553211 11222222211 111111 1111
Q ss_pred cCCCCccccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH-------Hh----hh--
Q 014768 151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAE-------SI----AR-- 217 (419)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~-- 217 (419)
... . . .....|+.+|+++..-+.....++.+........+....+....+..+..+.. .+ ..
T Consensus 137 ~~~-~--~--~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 211 (463)
T PRK12416 137 TKN-K--E--FTKDTSLALFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQ 211 (463)
T ss_pred cCC-C--C--CCCCCCHHHHHHHhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccC
Confidence 100 0 0 12578899999876333333445554443222221111111111111111110 00 00
Q ss_pred ccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768 218 FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 286 (419)
Q Consensus 218 ~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~ 286 (419)
..+...+.+++||++.|+++|++.+.+ ++|++|++|++|..+ ++++ .|++ +|+++.||+||++..
T Consensus 212 ~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 212 SAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFANHESIQADYVVLAAP 277 (463)
T ss_pred CCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEECCC
Confidence 012335778999999999999998754 689999999999984 6655 5555 778899999999874
No 16
>PRK07208 hypothetical protein; Provisional
Probab=99.89 E-value=7.1e-22 Score=195.02 Aligned_cols=252 Identities=16% Similarity=0.166 Sum_probs=153.5
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCccee
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI 80 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~ 80 (419)
|++..||+|||||++||+||++|+++|++|+|+|+++++||++.+...+ ++.+|.|+|++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~--------------------g~~~d~G~h~~ 60 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYK--------------------GNRFDIGGHRF 60 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccC--------------------CceEccCCcee
Confidence 7888999999999999999999999999999999999999999987642 68899999998
Q ss_pred ecCch-hhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768 81 IANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (419)
Q Consensus 81 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
....+ +.+++.+.+..+.+... ....+.+.+|....+|....+.+. .+.+.. .+.....++..... +.
T Consensus 61 ~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~l~--~~~~~~--~~~~~~~~~~~~~~--~~---- 129 (479)
T PRK07208 61 FSKSPEVMDLWNEILPDDDFLLR-PRLSRIYYRGKFFDYPLKAFDALK--NLGLWR--TAKCGASYLKARLR--PR---- 129 (479)
T ss_pred ccCCHHHHHHHHHhcCCCccccc-cccceEEECCEEecCCcchhHHHH--hCCHhH--HHHHHHHHHHHhcC--CC----
Confidence 86654 44445555543322211 122334557777777644222221 122111 11222222222110 00
Q ss_pred ccCCcccHHHHHHHcCCChhHHHHHHHHHh-hccCCCCCCCcHHHHH---------HHHHHHHHHh-h-------hcc-C
Q 014768 160 MDLTRVTTRELIAKYGLDDNTIDFIGHALA-LHRDDRYLNEPALDTV---------KRMKLYAESI-A-------RFQ-G 220 (419)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~-------~~~-g 220 (419)
....++.+|+.+..-......++.+... ++..+ ...-++..++ ..+...+... . ... .
T Consensus 130 --~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (479)
T PRK07208 130 --KEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGVP-CDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSL 206 (479)
T ss_pred --CCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCCC-hHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccc
Confidence 1468899999875333333444444332 22211 1011111000 0011011110 0 000 0
Q ss_pred CCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCc-EEEEEe---CCe--EEEcCEEEeCCCC
Q 014768 221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK-VVGVTS---EGE--TAKCKKVVCDPSY 287 (419)
Q Consensus 221 ~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~-v~gV~~---~g~--~i~ad~VV~~~~~ 287 (419)
...+.+|+||++.++++|++.+++.|++|++|++|++|..+ +++ ++++.. +|+ ++.||+||++.+.
T Consensus 207 ~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~-~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 207 IEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHD-GDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred eeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 23577999999999999999999999999999999999985 554 445543 343 6899999998754
No 17
>PLN02576 protoporphyrinogen oxidase
Probab=99.89 E-value=1.1e-21 Score=194.55 Aligned_cols=250 Identities=18% Similarity=0.183 Sum_probs=157.7
Q ss_pred CcceEEEECCCchHHHHhhccccC-CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~ 81 (419)
.++||+|||||++||+||++|+++ |++|+|+|+++++||+++|.+.+ +|.+|.||+++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~--------------------g~~~d~G~~~~~ 70 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED--------------------GFIWEEGPNSFQ 70 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC--------------------CeEEecCCchhc
Confidence 357999999999999999999999 99999999999999999998643 799999999999
Q ss_pred cCchhhHHHHhcCCcceeeEEEe-cceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccc
Q 014768 82 ANGALVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM 160 (419)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (419)
...+.+..+.+.++.+++.+... ...+.+.+|+...+|.+..+.+...+.++.++ +....... .+....+
T Consensus 71 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~------ 141 (496)
T PLN02576 71 PSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGK--IRAGLGAF-GWKRPPP------ 141 (496)
T ss_pred cCcHHHHHHHHcCChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHH--HHHhHHHh-hccCCCC------
Confidence 87777777777788766544322 23456678888888865444444455554332 21111111 1101011
Q ss_pred cCCcccHHHHHHHcCCChhH-HHHHHHHHhhccCCCCCCCcHHHHHHHHHHH-----------HHHh-hh-c--------
Q 014768 161 DLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLY-----------AESI-AR-F-------- 218 (419)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~-~-------- 218 (419)
.....++.+|+++. +.+.+ ..++.+...-....+...-++...+..+..+ +... .. .
T Consensus 142 ~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~ 220 (496)
T PLN02576 142 PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRD 220 (496)
T ss_pred CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccc
Confidence 12568999999876 44444 4455544422222111111111111111110 0000 00 0
Q ss_pred -----cCCCeEEEecCCcCcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEE--e-CC-eEEEcCEEEeCCC
Q 014768 219 -----QGGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT--S-EG-ETAKCKKVVCDPS 286 (419)
Q Consensus 219 -----~g~~~~~~p~gG~~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~--~-~g-~~i~ad~VV~~~~ 286 (419)
.+....++.+||++.|+++|++.+ + ++|++|++|++|+.+ +++.+.|+ . +| +++.||+||++..
T Consensus 221 ~~~~~~~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~-~~~~~~v~~~~~~g~~~~~ad~VI~a~P 294 (496)
T PLN02576 221 PRLPKPKGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKN-DDGGYSLTYDTPEGKVNVTAKAVVMTAP 294 (496)
T ss_pred cccccccCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEEC-CCCcEEEEEecCCCceeEEeCEEEECCC
Confidence 011235677999999999998765 5 689999999999984 55412333 2 45 4799999999874
No 18
>PLN02612 phytoene desaturase
Probab=99.87 E-value=3.9e-20 Score=184.37 Aligned_cols=254 Identities=15% Similarity=0.135 Sum_probs=156.2
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~ 83 (419)
..+|+|||||++||+||++|+++|++|+|+|+++++||++.++... .++.+|.|+|++...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~-------------------~G~~~D~G~h~~~g~ 153 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGA 153 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC-------------------CCCEEcCCceEEeCC
Confidence 4689999999999999999999999999999999999999987521 268899999999865
Q ss_pred c-hhhHHHHhcCCcceeeEEEecceeEEe--CCeEE--EecC---Ch----hhhhc-cCCCChHhHHHHHHHHHHHhhcc
Q 014768 84 G-ALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVH--KVPA---TD----MEALK-SPLMGIFEKRRARKFFIYVQDYD 150 (419)
Q Consensus 84 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~--~g~~~--~~~~---~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 150 (419)
. .+.+++.+.|+.+.+.+......+.+. .+... ..|. .. .+.+. ...+++.++ +...........
T Consensus 154 ~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~k--l~~~~~~~~~~~ 231 (567)
T PLN02612 154 YPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEK--IKFAIGLLPAIV 231 (567)
T ss_pred CchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHH--HHHHHhhhHHhc
Confidence 4 356666667887665554433333222 12221 1111 10 11110 111122111 111111100000
Q ss_pred cCCCCccccccCCcccHHHHHHHcCCChhHHH-HHHHHH-hhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEec
Q 014768 151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 228 (419)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~ 228 (419)
...+. ....+..++.+|+++.+.++.+.+ ++.++. .++..+ ..+.++...+..+..+ +... +.+...++.
T Consensus 232 ~~~~~---~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~-p~~~S~~~~l~~l~~~---l~~~-~gs~~~~~~ 303 (567)
T PLN02612 232 GGQAY---VEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFIN-PDELSMQCILIALNRF---LQEK-HGSKMAFLD 303 (567)
T ss_pred ccchh---hhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-HHHhhHHHHHHHHHHH---Hhcc-CCceEeeec
Confidence 00000 002457899999999988886654 555443 222211 1011122222221111 1111 234566777
Q ss_pred CCc-CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768 229 YGL-GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 286 (419)
Q Consensus 229 gG~-~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~ 286 (419)
|+. ..++++|++.++++|++|++|++|++|+.++++++++|++ +|+++.||+||++..
T Consensus 304 G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 304 GNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred CCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 775 6799999999999999999999999999854666777887 888999999999874
No 19
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.86 E-value=6.4e-20 Score=179.38 Aligned_cols=257 Identities=17% Similarity=0.158 Sum_probs=154.1
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCch
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA 85 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~ 85 (419)
+|+|||||++||+||+.|+++|++|+|+|+++.+||+++++... .++.+|.|+|++....+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-------------------~g~~~d~G~~~~~~~~~ 61 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG-------------------DGNHIEMGLHVFFGCYA 61 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC-------------------CCceEeeceEEecCchH
Confidence 58999999999999999999999999999999999999987321 27889999999986543
Q ss_pred -hhHHHHhcCCcceeeEEEecceeEEeCCeEEEe--------cC-ChhhhhccCCCChHhHHHHHHHH---HHHhhcccC
Q 014768 86 -LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKV--------PA-TDMEALKSPLMGIFEKRRARKFF---IYVQDYDEN 152 (419)
Q Consensus 86 -~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 152 (419)
+.+.+.+.++.+.+........+...++....+ |- .-...+....+++.++-.+.... .........
T Consensus 62 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~ 141 (474)
T TIGR02732 62 NLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDY 141 (474)
T ss_pred HHHHHHHHcCCccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhcccc
Confidence 555555577765543322111122223332111 10 00122333444443322211111 111100000
Q ss_pred C--CCccccccCCcccHHHHHHHcCCChh-HHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecC
Q 014768 153 D--PKTHEGMDLTRVTTRELIAKYGLDDN-TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY 229 (419)
Q Consensus 153 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~g 229 (419)
. ...+. ...+.++.+|+++++.++. ...++.+++......+..+.++..++..+.. +......+...+++|
T Consensus 142 ~~~~~~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~----~~~~~~~s~~~~~~g 215 (474)
T TIGR02732 142 DGAMKTIR--DLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFML----FAAKTEASKLRMLKG 215 (474)
T ss_pred chhhhhhh--hhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH----HHhCCCcceeeeecC
Confidence 0 00000 1356899999999988875 5566666543322211111112222211121 121112456778899
Q ss_pred CcCc-HHHHHHHHHHHcCcEEEcCCccceEEEcC--CC--cEEEEEe-CC---eEEEcCEEEeCCCC
Q 014768 230 GLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS-EG---ETAKCKKVVCDPSY 287 (419)
Q Consensus 230 G~~~-l~~al~~~~~~~G~~i~~~~~V~~I~~~~--~~--~v~gV~~-~g---~~i~ad~VV~~~~~ 287 (419)
|++. +.+.|++.++++|++|+++++|++|+.++ ++ ++++|++ +| +++.||+||++.+.
T Consensus 216 ~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~ 282 (474)
T TIGR02732 216 SPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDV 282 (474)
T ss_pred CcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCCh
Confidence 9777 77889999999999999999999999842 13 3777776 33 56999999998764
No 20
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.86 E-value=9.3e-20 Score=178.65 Aligned_cols=254 Identities=15% Similarity=0.137 Sum_probs=150.1
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCc-
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG- 84 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~- 84 (419)
+|+|||||++||+||++|+++|++|+|+|+++++||+++++... .++.+|.|++++....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~-------------------~g~~~d~G~~~~~~~~~ 61 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGAYP 61 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC-------------------CCCEEEcCcceeccCCc
Confidence 58999999999999999999999999999999999999987411 1678999999987653
Q ss_pred hhhHHHHhcCCcceeeEEEecceeEEe--CCeEE--EecC--Chhhh----hc-cCCCChHhHHHHHHHHHHHhhcccCC
Q 014768 85 ALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVH--KVPA--TDMEA----LK-SPLMGIFEKRRARKFFIYVQDYDEND 153 (419)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~g~~~--~~~~--~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (419)
.+.+++.+.++.+.+.+......+.+. ++... ..+. ..... +. ....++.++ +.-............
T Consensus 62 ~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 139 (453)
T TIGR02731 62 NMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEK--IKFAIGLLPAIVRGQ 139 (453)
T ss_pred hHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHH--HHHHHHhHHHHhcCc
Confidence 456666667877655443322222211 22221 1111 00111 11 111222121 111111111000000
Q ss_pred CCccccccCCcccHHHHHHHcCCChhHHH-HHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCC-c
Q 014768 154 PKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG-L 231 (419)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG-~ 231 (419)
+. ...++..++.+|+++.+.++.+.+ ++.++.......+....++...+..+..++ ...+ .....+..|+ +
T Consensus 140 ~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~--~~~~--g~~~~~~~g~~~ 212 (453)
T TIGR02731 140 KY---VEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL--QERH--GSKMAFLDGAPP 212 (453)
T ss_pred cc---hhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--hcCC--CCeeEeecCCCh
Confidence 00 002467899999999888888654 555444222111110111112221111111 1111 2223345555 5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe-----EEEcCEEEeCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-----TAKCKKVVCDPSY 287 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~-----~i~ad~VV~~~~~ 287 (419)
..++++|++.++++|++|++|++|++|..++++++++|++ +|+ ++.||.||++.+.
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 7899999999999999999999999998644667888887 565 7999999998754
No 21
>PLN02487 zeta-carotene desaturase
Probab=99.84 E-value=1.7e-19 Score=177.69 Aligned_cols=259 Identities=17% Similarity=0.139 Sum_probs=156.0
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG 84 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~ 84 (419)
.+|+|||||++||++|+.|+++|++|+|+|+++.+||+++++... .++.+|.|+|++....
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~-------------------~g~~~e~G~h~~~~~~ 136 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK-------------------NGNHIEMGLHVFFGCY 136 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec-------------------CCcEEecceeEecCCc
Confidence 589999999999999999999999999999999999999988421 2688999999987543
Q ss_pred -hhhHHHHhcCCcceeeEEEecceeEEeCCeEEE----ecCChh-----hhhccCCCChHhHHHHHHH---HHHHhhccc
Q 014768 85 -ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK----VPATDM-----EALKSPLMGIFEKRRARKF---FIYVQDYDE 151 (419)
Q Consensus 85 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 151 (419)
.+.+++.+.++.+.+.+...-..+...+|.... .|.... ..+....+++.++-.+..- ...+....
T Consensus 137 ~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~- 215 (569)
T PLN02487 137 NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALV- 215 (569)
T ss_pred HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhcc-
Confidence 466667777887654432211112223443321 111101 1122223332222111000 00000000
Q ss_pred CCCC--ccccccCCcccHHHHHHHcCCChh-HHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEec
Q 014768 152 NDPK--THEGMDLTRVTTRELIAKYGLDDN-TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 228 (419)
Q Consensus 152 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~ 228 (419)
.+. ....-..++.++.+|+++++.++. +..++.+........+..+.++..+...+ ..+....+.+-..|++
T Consensus 216 -~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl----~~~~~~~~~~~l~~~~ 290 (569)
T PLN02487 216 -DPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIF----SLFATKTEASLLRMLK 290 (569)
T ss_pred -CccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH----HHHhhcCCcceeeecC
Confidence 000 000002356899999999988774 55566654433222211111111121121 1111111234477999
Q ss_pred CCcCc-HHHHHHHHHHHcCcEEEcCCccceEEEcC--CC--cEEEEEe--C--CeEEEcCEEEeCCCCC
Q 014768 229 YGLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS--E--GETAKCKKVVCDPSYL 288 (419)
Q Consensus 229 gG~~~-l~~al~~~~~~~G~~i~~~~~V~~I~~~~--~~--~v~gV~~--~--g~~i~ad~VV~~~~~~ 288 (419)
||+.. |++++++.++++|++|+++++|++|..+. ++ ++++|++ + ++++.||+||++.+..
T Consensus 291 Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 291 GSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred CCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 99995 99999999999999999999999999842 22 4788887 3 3478999999988653
No 22
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.82 E-value=5.8e-19 Score=170.66 Aligned_cols=240 Identities=13% Similarity=0.210 Sum_probs=150.0
Q ss_pred cceEEEECCCchHHHHhhccccC----CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcce
Q 014768 4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~ 79 (419)
..+|+|||||++||+||++|++. |.+|+|+|+++.+||++.+.... ..+|.+|.|+.+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~------------------~~Gy~~~~G~~~ 83 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNP------------------EKGYVARGGREM 83 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccc------------------cCCEEEECCCCc
Confidence 46899999999999999999985 68999999999999999875421 127999999987
Q ss_pred eecCchhhHHHHhc------C---CcceeeEEEeccee---E--EeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHH
Q 014768 80 IIANGALVRVLIHT------D---VTKYLYFKAVDGSF---V--YNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY 145 (419)
Q Consensus 80 ~~~~~~~~~~l~~~------~---~~~~~~~~~~~~~~---~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (419)
......+.+++... + +++++.+.+.++.+ . +.+|..+.. ....+ ..+....++++
T Consensus 84 ~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~----------~~~~L-~~k~r~~Ll~l 152 (576)
T PRK13977 84 ENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDT----------DKFGL-SKKDRKELLKL 152 (576)
T ss_pred cchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEEC----------cCCCC-CHHHHHHHHHH
Confidence 44444456665442 1 23556666655553 2 223333321 11222 22333333333
Q ss_pred HhhcccCCCCccccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEE
Q 014768 146 VQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI 225 (419)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (419)
+..-. + .++..++.+|++...+...+..++... +.-..+ .++.+....+.+|+..+......+++.
T Consensus 153 ~l~~e-------~--~Ld~~tI~d~f~~~Ff~t~Fw~~w~t~---FaF~~w--hSA~E~rry~~rf~~~~~~l~~~s~l~ 218 (576)
T PRK13977 153 LLTPE-------E--KLDDKTIEDWFSPEFFETNFWYYWRTM---FAFEKW--HSALEMRRYMHRFIHHIGGLPDLSGLK 218 (576)
T ss_pred hccCH-------H--HhCCcCHHHHHhhcCchhHHHHHHHHH---HCCchh--hHHHHHHHHHHHHHHhhccCCcccccc
Confidence 22211 1 257899999999876655444443333 222221 234454444445544333321133444
Q ss_pred EecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEc-CC--CcEEEEEe--CCe-----EEEcCEEEeCCC
Q 014768 226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD-EE--GKVVGVTS--EGE-----TAKCKKVVCDPS 286 (419)
Q Consensus 226 ~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~-~~--~~v~gV~~--~g~-----~i~ad~VV~~~~ 286 (419)
+.++- ..+++..|.+.++++|++|++|++|++|..+ ++ ++|++|.. +|+ ...+|.||++.+
T Consensus 219 ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnG 290 (576)
T PRK13977 219 FTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNG 290 (576)
T ss_pred CCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCC
Confidence 55544 5789999999999999999999999999983 23 67888877 332 346788886543
No 23
>PLN02268 probable polyamine oxidase
Probab=99.75 E-value=7.9e-18 Score=164.23 Aligned_cols=237 Identities=16% Similarity=0.172 Sum_probs=125.1
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC-
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN- 83 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~- 83 (419)
.+|||||||++||+||+.|.++|++|+|||+++++||+++|... .++.+|+|++++...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~--------------------~g~~~d~G~~~i~~~~ 60 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYS--------------------FGFPVDMGASWLHGVC 60 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCc--------------------CCcccCCCCeeEeccC
Confidence 37999999999999999999999999999999999999998752 267899999998642
Q ss_pred --chhhHHHHhcCCcceeeEEEecceeEEeCC-eEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCccccc
Q 014768 84 --GALVRVLIHTDVTKYLYFKAVDGSFVYNKG-KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM 160 (419)
Q Consensus 84 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (419)
.++.+++.+.++..+-. ..+..+.+..+ ..+.+.......+... ....-...|...+.........
T Consensus 61 ~~~~~~~l~~~lgl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----- 129 (435)
T PLN02268 61 NENPLAPLIGRLGLPLYRT--SGDNSVLYDHDLESYALFDMDGNQVPQE----LVTKVGETFERILEETEKVRDE----- 129 (435)
T ss_pred CCchHHHHHHHhCCceEec--cCCccccccccccccceecCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHhc-----
Confidence 34666666677642210 11111222211 1000000000000000 0000111122222211110000
Q ss_pred cCCcccHHHHHHHcCC-Ch------hHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCc
Q 014768 161 DLTRVTTRELIAKYGL-DD------NTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGE 233 (419)
Q Consensus 161 ~~~~~~~~~~~~~~~~-~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~ 233 (419)
...+.|+.++++.+.. .+ ..++++...+.-.. .-+..++..-.+.. + .....+.|. ..+..+|++.
T Consensus 130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ls~~~---~-~~~~~~~g~--~~~~~~G~~~ 202 (435)
T PLN02268 130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRME-GWFAADADTISLKS---W-DQEELLEGG--HGLMVRGYDP 202 (435)
T ss_pred cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHH-HHhCCChHhCchhh---c-CCccccCCC--ceeecCCHHH
Confidence 1245678887654321 00 11222221111000 00000110000000 0 000001121 2357789999
Q ss_pred HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 286 (419)
Q Consensus 234 l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~ 286 (419)
++++|++ |.+|++|++|++|... ++++. |++ +|+++.||+||++..
T Consensus 203 l~~~l~~-----~~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~VIva~P 249 (435)
T PLN02268 203 VINTLAK-----GLDIRLNHRVTKIVRR-YNGVK-VTVEDGTTFVADAAIIAVP 249 (435)
T ss_pred HHHHHhc-----cCceeCCCeeEEEEEc-CCcEE-EEECCCcEEEcCEEEEecC
Confidence 9998865 5679999999999984 55554 555 788899999998763
No 24
>PLN02568 polyamine oxidase
Probab=99.73 E-value=1.6e-16 Score=156.70 Aligned_cols=77 Identities=10% Similarity=0.258 Sum_probs=64.9
Q ss_pred CCCcceEEEECCCchHHHHhhccccCC-----CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEcc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDG-----LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDM 75 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G-----~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~ 75 (419)
|++..||||||||++||+||.+|+++| ++|+|+|+++++||++++.... ++.+|+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~--------------------g~~~d~ 61 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFG--------------------GERIEM 61 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeC--------------------CeEEec
Confidence 455689999999999999999999887 9999999999999999998643 688999
Q ss_pred Ccceeec--CchhhHHHHhcCCcc
Q 014768 76 IPKFIIA--NGALVRVLIHTDVTK 97 (419)
Q Consensus 76 gp~~~~~--~~~~~~~l~~~~~~~ 97 (419)
|++++.. ..++.+++.+.++..
T Consensus 62 G~~~~~g~~~~~~~~l~~~~g~~~ 85 (539)
T PLN02568 62 GATWIHGIGGSPVYKIAQEAGSLE 85 (539)
T ss_pred CCceeCCCCCCHHHHHHHHhCCcc
Confidence 9999984 345666666677643
No 25
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.72 E-value=7.8e-16 Score=149.68 Aligned_cols=238 Identities=17% Similarity=0.150 Sum_probs=137.6
Q ss_pred HHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCch-hhHHHHhcCCc
Q 014768 18 ILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA-LVRVLIHTDVT 96 (419)
Q Consensus 18 ~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~-~~~~l~~~~~~ 96 (419)
+||++|+++|++|+|||+++++||+++|++.++ .++.+|.|++++....+ +.+++.+.++.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g------------------~~~~~d~G~~~~~~~~~~~~~l~~~lgl~ 62 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGG------------------LGQTIDNGQHVLLGAYTNLLALLRRIGAE 62 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCC------------------CCcceecCCEEEEcccHHHHHHHHHhCCc
Confidence 589999999999999999999999999986431 13459999999986543 55555557777
Q ss_pred ceeeEEEecceeEE-eCCeEEEe-----cCC-h-hhh-hccCCCChHhHHHHHHHHHHHhhcccCCCCccccccCCcccH
Q 014768 97 KYLYFKAVDGSFVY-NKGKVHKV-----PAT-D-MEA-LKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTT 167 (419)
Q Consensus 97 ~~~~~~~~~~~~~~-~~g~~~~~-----~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (419)
....+.. .....+ .++....+ +.. . ... +....++. ....++...+........ . .....++
T Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~---~--~~~~~s~ 133 (419)
T TIGR03467 63 PRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSW---ADKLALARALLALRRTRF---R--ALDDTTV 133 (419)
T ss_pred hhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCH---HHHHHHHHHHHHHHhcCc---c--ccCCCCH
Confidence 5533211 111112 23322111 110 0 011 11122222 222233333222211000 0 2357899
Q ss_pred HHHHHHcCCChhHHH-HHHHHHhhccCCCCCCCcHHHHHHHHHHHHH-HhhhccCCCeEEEecCCcCcHH-HHHHHHHHH
Q 014768 168 RELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAE-SIARFQGGSPYIYPLYGLGELP-QAFARLSAV 244 (419)
Q Consensus 168 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~p~gG~~~l~-~al~~~~~~ 244 (419)
.+|+++.+.++.+.+ ++.+....... .++..-....+...+. .+........+++|+||++.+. ++|++.+++
T Consensus 134 ~~~l~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~ 209 (419)
T TIGR03467 134 GDWLQAAGQSERLIERLWEPLLLSALN----TPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDS 209 (419)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHH
Confidence 999999877776655 44443322111 1221111111111111 1111111335889999988876 558999989
Q ss_pred cCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEeCCCC
Q 014768 245 YGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSY 287 (419)
Q Consensus 245 ~G~~i~~~~~V~~I~~~~~~~v~gV~-~~g~~i~ad~VV~~~~~ 287 (419)
.|++|++|++|++|..+ ++++..+. .+|+++.||+||++.+.
T Consensus 210 ~g~~i~~~~~V~~i~~~-~~~~~~~~~~~g~~~~~d~vi~a~p~ 252 (419)
T TIGR03467 210 RGGEVRLGTRVRSIEAN-AGGIRALVLSGGETLPADAVVLAVPP 252 (419)
T ss_pred cCCEEEcCCeeeEEEEc-CCcceEEEecCCccccCCEEEEcCCH
Confidence 99999999999999984 66654433 37888999999998743
No 26
>PLN02529 lysine-specific histone demethylase 1
Probab=99.70 E-value=6.4e-16 Score=155.58 Aligned_cols=234 Identities=15% Similarity=0.153 Sum_probs=133.4
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~ 83 (419)
..||+|||||++||+||..|+++|++|+|+|+++++||++.|...+ ..+ ..+.+|+|++++...
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~-------~~g---------~~~~~DlGaswi~g~ 223 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMG-------RKG---------QFAAVDLGGSVITGI 223 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeeccc-------CCC---------CceEEecCCeecccc
Confidence 4799999999999999999999999999999999999999988632 000 125789999999754
Q ss_pred c--hhhHHHHhcCCcceeeEEEeccee--EEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccc
Q 014768 84 G--ALVRVLIHTDVTKYLYFKAVDGSF--VYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG 159 (419)
Q Consensus 84 ~--~~~~~l~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (419)
. ++..+..+.++.-+ .+++.+ .+.+|...... .+. .+...+. +.+.++..+..... .
T Consensus 224 ~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~---~~~---~~~~~~~-~~l~~~~~l~~~~~----~---- 284 (738)
T PLN02529 224 HANPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKE---IDS---NIEFIFN-KLLDKVTELRQIMG----G---- 284 (738)
T ss_pred ccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchh---hhh---hHHHHHH-HHHHHHHHHHHhcc----c----
Confidence 2 34444444454321 222222 23455433111 000 0000111 11222222111111 0
Q ss_pred ccCCcccHHHHHHHcC------CChhHHHHHHHHHh-hccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcC
Q 014768 160 MDLTRVTTRELIAKYG------LDDNTIDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLG 232 (419)
Q Consensus 160 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~ 232 (419)
.....|+.+++++.. +++..++++..... +.... ......++. ..+.. -..+..........||++
T Consensus 285 -~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~----~~~~s~LSl-~~~~~-~~~~e~~G~~~~i~GG~~ 357 (738)
T PLN02529 285 -FANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYAN----AGCLSDLSA-AYWDQ-DDPYEMGGDHCFLAGGNW 357 (738)
T ss_pred -CccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceec----CCChHHhhh-hHhhh-ccccccCCceEEECCcHH
Confidence 134677888776542 34444444443222 11110 011111111 11110 011211234567899999
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 286 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~ 286 (419)
+|+++|++. ..|++|++|++|..+ ++.+ .|+++++++.||+||++..
T Consensus 358 ~Li~aLA~~-----L~IrLnt~V~~I~~~-~dGV-tV~t~~~~~~AD~VIVTVP 404 (738)
T PLN02529 358 RLINALCEG-----VPIFYGKTVDTIKYG-NDGV-EVIAGSQVFQADMVLCTVP 404 (738)
T ss_pred HHHHHHHhc-----CCEEcCCceeEEEEc-CCeE-EEEECCEEEEcCEEEECCC
Confidence 999999863 459999999999984 5554 3556777899999999874
No 27
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.70 E-value=8e-16 Score=155.57 Aligned_cols=237 Identities=14% Similarity=0.165 Sum_probs=132.3
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~ 83 (419)
..+|+|||||++||+||..|++.|++|+|+|+++++||++.+....+ ....+.+|+|++++...
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g----------------~~~~~~~d~Gas~i~g~ 301 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKG----------------DGVVAAADLGGSVLTGI 301 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCC----------------CCcceeccCCceeecCC
Confidence 47899999999999999999999999999999999999999886421 11135789999998754
Q ss_pred c--hhhHHHHhcCCcceeeEEEecce--eEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhccc-CCCCccc
Q 014768 84 G--ALVRVLIHTDVTKYLYFKAVDGS--FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE-NDPKTHE 158 (419)
Q Consensus 84 ~--~~~~~l~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (419)
. ++..++.+.++..+ .++.. +.+.+|..+..... ... + ..+.+++..+..+.. ..+..
T Consensus 302 ~~npl~~l~~~lgl~~~----~~~~~~~~~~~dG~~~~~~~~------~~v----~-~~f~~lL~~~~klr~~~~~~~-- 364 (808)
T PLN02328 302 NGNPLGVLARQLGLPLH----KVRDICPLYLPDGKAVDAEID------SKI----E-ASFNKLLDRVCKLRQAMIEEV-- 364 (808)
T ss_pred CccHHHHHHHHcCCceE----ecCCCceEEeCCCcCcchhhh------hhH----H-HHHHHHHHHHHHHHHhhhhcc--
Confidence 2 34445555665422 22222 23455654321100 000 0 111122222111110 00000
Q ss_pred cccCCcccHHHHHHHc------CCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcC
Q 014768 159 GMDLTRVTTRELIAKY------GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLG 232 (419)
Q Consensus 159 ~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~ 232 (419)
.-.+.++.++++.+ ..++..+.++...+... .+........++. ..+.. -..+..........||+.
T Consensus 365 --~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanl---E~~~gs~ls~LSl-~~w~q-d~~~e~~G~~~~v~GG~~ 437 (808)
T PLN02328 365 --KSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANL---EYANASLMSNLSM-AYWDQ-DDPYEMGGDHCFIPGGND 437 (808)
T ss_pred --cccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHH---hccchhhHHHHHh-hhhhc-cccccCCCeEEEECCcHH
Confidence 01245677766532 22333333333222111 0111111111110 00100 001211233567789999
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~ 287 (419)
.|+++|++.+ .|++|++|++|..+ ++.+ .|..+|+++.||+||++...
T Consensus 438 ~Li~aLa~~L-----~I~ln~~V~~I~~~-~dgV-~V~~~G~~~~AD~VIvTvPl 485 (808)
T PLN02328 438 TFVRELAKDL-----PIFYERTVESIRYG-VDGV-IVYAGGQEFHGDMVLCTVPL 485 (808)
T ss_pred HHHHHHHhhC-----CcccCCeeEEEEEc-CCeE-EEEeCCeEEEcCEEEECCCH
Confidence 9999998765 38999999999984 5544 34458889999999998743
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.69 E-value=2.6e-15 Score=132.94 Aligned_cols=247 Identities=17% Similarity=0.187 Sum_probs=136.6
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec-
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA- 82 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~- 82 (419)
..+|+|||+|++||+||+.|+++ ++|+++|+++++||+++|...+ .++ .++.+|.|-.++..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~-------~d~---------~g~~vDtGfiVyn~~ 70 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGN-------TDG---------GGVFVDTGFIVYNER 70 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeecc-------ccC---------CceeecceeEEecCC
Confidence 46899999999999999999987 7999999999999999998532 111 15778888777754
Q ss_pred Cc-hhhHHHHhcCCcce---eeEEE-ecc-eeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCc
Q 014768 83 NG-ALVRVLIHTDVTKY---LYFKA-VDG-SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKT 156 (419)
Q Consensus 83 ~~-~~~~~l~~~~~~~~---~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (419)
.. .+..++...|+... ++|.- .+. .+-|..... + ...-..+..++...-...+...+.+.+.- ..+
T Consensus 71 tYpnl~~Lf~~iGv~t~as~Msf~v~~d~gglEy~g~tg---l-~~L~aqk~n~l~pRf~~mlaeiLrf~r~~--~~~-- 142 (447)
T COG2907 71 TYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLEYSGLTG---L-AGLLAQKRNLLRPRFPCMLAEILRFYRSD--LAP-- 142 (447)
T ss_pred CcchHHHHHHHcCCCCcccceeEEEEecCCceeeccCCC---c-cchhhccccccchhHHHHHHHHHHHhhhh--ccc--
Confidence 22 35555555555432 22211 111 111211100 0 00111112221110111111112221110 011
Q ss_pred cccccCCcccHHHHHHHcCCChhHHH-HHHHHH-hhccCCCCCCCcHHHHHHH----HHHHHHHhh-hccCCCeEE-Eec
Q 014768 157 HEGMDLTRVTTRELIAKYGLDDNTID-FIGHAL-ALHRDDRYLNEPALDTVKR----MKLYAESIA-RFQGGSPYI-YPL 228 (419)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~g~~~~~-~p~ 228 (419)
.........++.+|+++.+++..+.+ ++.++. +.+.. |...+..+ +..|+..-+ .+.-+.|.| .+.
T Consensus 143 ~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwst------p~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ 216 (447)
T COG2907 143 SDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWST------PLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVA 216 (447)
T ss_pred hhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcC------cHhhhhhhhHHHHHHHHhccCceecCCCCceeEcc
Confidence 11112357899999999999877643 344333 33321 22222111 111211111 111244544 456
Q ss_pred CCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCC
Q 014768 229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDP 285 (419)
Q Consensus 229 gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~ 285 (419)
||..+.++.|.... +++|.++++|.+|..-.+| +..+..+|++-++|+||.++
T Consensus 217 ggS~~yvq~laa~~---~~~i~t~~~V~~l~rlPdG-v~l~~~~G~s~rFD~vViAt 269 (447)
T COG2907 217 GGSRAYVQRLAADI---RGRIETRTPVCRLRRLPDG-VVLVNADGESRRFDAVVIAT 269 (447)
T ss_pred cchHHHHHHHhccc---cceeecCCceeeeeeCCCc-eEEecCCCCccccceeeeec
Confidence 88888888887544 7889999999999975455 33344479999999977543
No 29
>PLN02676 polyamine oxidase
Probab=99.68 E-value=1.8e-15 Score=148.31 Aligned_cols=240 Identities=15% Similarity=0.193 Sum_probs=126.9
Q ss_pred CcceEEEECCCchHHHHhhccccCCC-eEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~ 81 (419)
..+||+|||||++||+||..|+++|. +|+|+|+++++||++.+.... ++.+|.|++++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~--------------------g~~~d~g~~~~~ 84 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA--------------------GVSVELGANWVE 84 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC--------------------CeEEecCCEEEE
Confidence 35899999999999999999999998 699999999999999987532 688999999995
Q ss_pred c-----CchhhHHHHhcCCcceee-EEEecceeEE-eCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCC
Q 014768 82 A-----NGALVRVLIHTDVTKYLY-FKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP 154 (419)
Q Consensus 82 ~-----~~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (419)
. ..++.+++.+.++..... +.. .....+ .+|... + .+.. .. +. ..+..+.+++..+.....
T Consensus 85 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~-~~~~~~~~~g~~~--~---~~~~-~~----~~-~~~~~~~~~~~~~~~~~~ 152 (487)
T PLN02676 85 GVGGPESNPIWELANKLKLRTFYSDFDN-LSSNIYKQDGGLY--P---KKVV-QK----SM-KVADASDEFGENLSISLS 152 (487)
T ss_pred cccCcccChHHHHHHhcCCceeecCccc-cceeEECCCCCCC--C---HHHH-HH----HH-HHHHHHHHHHHHHHHhhc
Confidence 3 345666666666653211 110 011122 133322 1 0000 00 00 111222222222211000
Q ss_pred CccccccCCcccHH--HHHHHcC-CChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEe-cCC
Q 014768 155 KTHEGMDLTRVTTR--ELIAKYG-LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP-LYG 230 (419)
Q Consensus 155 ~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p-~gG 230 (419)
.....+.++. +.+.... ... ....+....... .+...+....+..+ ........+ |...+... ++|
T Consensus 153 ----~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~S~~~~-~~~~~~~~~-g~~~~~~~~~~G 222 (487)
T PLN02676 153 ----AKKAVDISILTAQRLFGQVPKTP-LEMVIDYYNYDY---EFAEPPRVTSLKNT-EPNPTFVDF-GEDEYFVADPRG 222 (487)
T ss_pred ----ccCCCCccHHHHHHHHhhCCCCH-HHHHHHHHhccc---eeccCccccchhhc-CcccccccC-CCceEEeecCCC
Confidence 0012334442 2233221 111 111111111100 00011111110000 000001112 22223222 689
Q ss_pred cCcHHHHHHHHHHHc------CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768 231 LGELPQAFARLSAVY------GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 286 (419)
Q Consensus 231 ~~~l~~al~~~~~~~------G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~ 286 (419)
+++|+++|++.+... +.+|++|++|++|..+ ++.+ .|++ +|++++||+||++..
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~-~~gV-~V~~~~G~~~~a~~VIvtvP 283 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS-KNGV-TVKTEDGSVYRAKYVIVSVS 283 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc-CCcE-EEEECCCCEEEeCEEEEccC
Confidence 999999999876443 3679999999999984 6655 4555 788999999999874
No 30
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.66 E-value=4.9e-16 Score=143.68 Aligned_cols=45 Identities=29% Similarity=0.397 Sum_probs=43.0
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN 47 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 47 (419)
+..||||||+|++||+||+.|.++|++|+|+|.++++|||+.+..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r 50 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTAR 50 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEe
Confidence 468999999999999999999999999999999999999999875
No 31
>PLN03000 amine oxidase
Probab=99.64 E-value=9.5e-15 Score=147.79 Aligned_cols=237 Identities=15% Similarity=0.180 Sum_probs=126.7
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~ 83 (419)
..+|+|||||++||+||..|++.|++|+|+|+++++||++.|.... |...++.+|+|++++...
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~----------------g~~~~~~~DlGas~i~g~ 247 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKME----------------ANRVGAAADLGGSVLTGT 247 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceeccc----------------CCCCceEeecCCeEEeCC
Confidence 4789999999999999999999999999999999999999998642 112257899999999765
Q ss_pred c--hhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccCCCCcccccc
Q 014768 84 G--ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD 161 (419)
Q Consensus 84 ~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (419)
. ++..++.+.++.-+ .... ...+.+.+|+.. +......+...+..++++ ..++...+....
T Consensus 248 ~~npl~~L~~qlgl~l~-~~~~-~~~ly~~~Gk~v--~~~~~~~ve~~fn~lLd~--~~~lr~l~~~~~----------- 310 (881)
T PLN03000 248 LGNPLGIIARQLGSSLY-KVRD-KCPLYRVDGKPV--DPDVDLKVEVAFNQLLDK--ASKLRQLMGDVS----------- 310 (881)
T ss_pred CccHHHHHHHHcCCcee-ecCC-CCeEEEeCCcCC--chhhhhhHHHHHHHHHHH--HHHHHHHhcccC-----------
Confidence 3 24444455565522 1111 112233456543 111000000000001110 111111111110
Q ss_pred CCcccHHHHHH---Hc---CCChhHHHHHHHHHh-hccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCCcCcH
Q 014768 162 LTRVTTRELIA---KY---GLDDNTIDFIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL 234 (419)
Q Consensus 162 ~~~~~~~~~~~---~~---~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG~~~l 234 (419)
.+.++.++++ .+ .+......++...+. +... .......+.. .+......+.........+||++.|
T Consensus 311 -~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~----~as~ls~LSl--~~wdqd~~~e~~G~~~~v~GG~~~L 383 (881)
T PLN03000 311 -MDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYA----NAGLVSKLSL--AFWDQDDPYDMGGDHCFLPGGNGRL 383 (881)
T ss_pred -cCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcc----cccCHHHHHH--HHhhhcccccCCCceEEeCCCHHHH
Confidence 1223332221 11 122222222221111 1110 1111111110 0111001121122355678999999
Q ss_pred HHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768 235 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (419)
Q Consensus 235 ~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~ 287 (419)
+++|++.+ .|+++++|++|..+ ++.+ .|+++++++.||+||++...
T Consensus 384 ieaLa~~L-----~I~Ln~~Vt~I~~~-~dgV-~V~~~~~~~~AD~VIvTVPl 429 (881)
T PLN03000 384 VQALAENV-----PILYEKTVQTIRYG-SNGV-KVIAGNQVYEGDMVLCTVPL 429 (881)
T ss_pred HHHHHhhC-----CcccCCcEEEEEEC-CCeE-EEEECCcEEEeceEEEcCCH
Confidence 99999865 39999999999984 5554 35555678999999998743
No 32
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.63 E-value=2e-15 Score=146.48 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=60.4
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA 82 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~ 82 (419)
+..+|||||||++||+||..|.+.|++|+|||+++++|||.+|+... .+-.+|+|.+++..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~-------------------~~~~vd~Gas~~~g 74 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSE-------------------GGDHVDLGASVLTG 74 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecC-------------------CCCeeecCCceecC
Confidence 35799999999999999999999999999999999999999998632 12358999999986
Q ss_pred Cch--hhHHHHhcCCcc
Q 014768 83 NGA--LVRVLIHTDVTK 97 (419)
Q Consensus 83 ~~~--~~~~l~~~~~~~ 97 (419)
... +.-+..+.++..
T Consensus 75 ~~~npl~~l~~qlgl~~ 91 (501)
T KOG0029|consen 75 VYNNPLALLSKQLGLEL 91 (501)
T ss_pred cCccHHHHHHHHhCccc
Confidence 543 333334456554
No 33
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.59 E-value=2.6e-13 Score=123.77 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=140.0
Q ss_pred cceEEEECCCchHHHHhhccccCCCeE--EEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKV--LHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V--~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~ 81 (419)
..+|+|||||++||++|++|++++.+| +++|+.+++||..+|..- .+++.||.||..+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~-------------------~ng~ifE~GPrtlr 71 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRM-------------------QNGFIFEEGPRTLR 71 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccC-------------------CCceeeccCCCccC
Confidence 468999999999999999999999765 559999999999998321 24899999999998
Q ss_pred cCch----hhHHHHhcCCcceeeEEEec-c----eeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccC
Q 014768 82 ANGA----LVRVLIHTDVTKYLYFKAVD-G----SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN 152 (419)
Q Consensus 82 ~~~~----~~~~l~~~~~~~~~~~~~~~-~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (419)
.-++ ..+++.++++++.+.....+ + .+.+..|++..+|.+-.......+..+ .+.-+..|+.....-...
T Consensus 72 pag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~-~k~L~~a~l~e~fr~~~~ 150 (491)
T KOG1276|consen 72 PAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPF-GKPLLEAFLRELFRKKVS 150 (491)
T ss_pred cCCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcc-cchhHHHHHhhhccccCC
Confidence 7766 77777778988653333222 2 345677888888854222222222222 223333333321111111
Q ss_pred CCCccccccCCcccHHHHHHHcCCChhHHH-HHHHHHhhccCCCCCCCcHHHHHHHHHHHH-----------HH-hh---
Q 014768 153 DPKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYA-----------ES-IA--- 216 (419)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~--- 216 (419)
.+ -.++++.+|+++.. -+++.+ ++.+++.-...++.-.-+....|..+...- .+ +.
T Consensus 151 ~~-------~~dESV~sF~~Rrf-G~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~ 222 (491)
T KOG1276|consen 151 DP-------SADESVESFARRRF-GKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKR 222 (491)
T ss_pred CC-------CccccHHHHHHHhh-hHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Confidence 11 25788999887652 244433 344444322222211112223322221111 00 00
Q ss_pred -----------hccCCCeEEEecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCC
Q 014768 217 -----------RFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEG 264 (419)
Q Consensus 217 -----------~~~g~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~ 264 (419)
.-.+..+.+--+||+..++++|.+.+.+.++.|.+.-++..+...+.+
T Consensus 223 ~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~ 281 (491)
T KOG1276|consen 223 TKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSG 281 (491)
T ss_pred CCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccC
Confidence 000122334557899999999999999888889999999888754334
No 34
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=1.7e-14 Score=136.15 Aligned_cols=245 Identities=18% Similarity=0.176 Sum_probs=134.7
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCc-
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG- 84 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~- 84 (419)
+|+|+|||++||+||++|+++|++|+|+|+++++||++.++... .+...+.|-|+|..+.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~-------------------dg~~~E~glh~f~~~Y~ 62 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDS-------------------DGNHVEHGLHVFFGCYY 62 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecC-------------------CCCeeeeeeEEechhHH
Confidence 79999999999999999999999999999999999999998642 2677788888887654
Q ss_pred hhhHHHHhcCCcceeeEEEecceeEE---eCCeEEEecCC-------h-hhhhccCCCChHhHHHHHHHHHHHhhcccCC
Q 014768 85 ALVRVLIHTDVTKYLYFKAVDGSFVY---NKGKVHKVPAT-------D-MEALKSPLMGIFEKRRARKFFIYVQDYDEND 153 (419)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (419)
.++++|.+...+..+.++.....+.- ..|..-+++.. . ...+....+ ..+...+|.--+-.....
T Consensus 63 n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~g- 138 (485)
T COG3349 63 NLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQL---PRREKIRFVLRLGDAPIG- 138 (485)
T ss_pred HHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhcccc---CHHHHhHHhhccccccch-
Confidence 47777776666544444332222211 12221111100 0 001111111 111111111111001000
Q ss_pred CCccccccCCcccHHHHHHHcCCChhH-HHHHHH-HHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCC-
Q 014768 154 PKTHEGMDLTRVTTRELIAKYGLDDNT-IDFIGH-ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG- 230 (419)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG- 230 (419)
......+++..++.+|+++.+.+... ++.+.+ ...+...... .-+.+-.+..+..+ .+..+ +.+-....+|+
T Consensus 139 -~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e-~~sa~~~lt~~~~~--~~~~~-~~~i~~~~~g~~ 213 (485)
T COG3349 139 -ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPE-GCSARFFLTILNLF--LIVTL-EASILRNLRGSP 213 (485)
T ss_pred -hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcc-cCcchhHHHHHHHH--HHhcc-CcchhhhhcCCC
Confidence 01111246789999999987765432 333322 2222221100 11111111111111 12222 21222344555
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCCccceEEEcC---CCcEEEEEeCCeEEEc
Q 014768 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDE---EGKVVGVTSEGETAKC 278 (419)
Q Consensus 231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~---~~~v~gV~~~g~~i~a 278 (419)
...+...+.+.+.+.|.+++.+.+|+.|..+. +.+++++...+....+
T Consensus 214 ~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~ 264 (485)
T COG3349 214 DEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQ 264 (485)
T ss_pred cceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEe
Confidence 45678889999999999999999999998753 4567777765544333
No 35
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.54 E-value=8.8e-14 Score=126.79 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=52.2
Q ss_pred CCeEEEec-CCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768 221 GSPYIYPL-YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 286 (419)
Q Consensus 221 ~~~~~~p~-gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~ 286 (419)
..+-++|. .....|+++|.+.+++.|++++++++|.+|+.+ + ....+.+ +|+++.||.+|.+.+
T Consensus 99 ~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 99 DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD-D-SGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec-C-ceEEEEcCCCCEEEccEEEEecC
Confidence 44456787 778899999999999999999999999999984 5 3456677 677899999876554
No 36
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.52 E-value=2.9e-14 Score=139.19 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=53.3
Q ss_pred chHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCch-hhHHHHh
Q 014768 14 LKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA-LVRVLIH 92 (419)
Q Consensus 14 i~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~-~~~~l~~ 92 (419)
|+||+||++|+++|++|+|||+++++||+++|++.+ . .++.+|+|++++..... +.+.+.+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~-------~-----------~g~~~e~G~~~~~~~~~~~~~~~~~ 62 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFD-------N-----------PGFTFELGAHRFFGMYPNLLNLIDE 62 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEET-------T-----------TTEEEESSS-EEETTSHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCC-------c-----------cceeecCCcccccccchhhHHHHHH
Confidence 689999999999999999999999999999999753 0 16999999999985543 4555555
Q ss_pred cCCcceeeE
Q 014768 93 TDVTKYLYF 101 (419)
Q Consensus 93 ~~~~~~~~~ 101 (419)
.++...+..
T Consensus 63 l~~~~~~~~ 71 (450)
T PF01593_consen 63 LGLELSLET 71 (450)
T ss_dssp HTHHTTEEE
T ss_pred hhhcccccc
Confidence 566433333
No 37
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.51 E-value=2.1e-14 Score=100.40 Aligned_cols=55 Identities=22% Similarity=0.483 Sum_probs=49.2
Q ss_pred EECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecC
Q 014768 9 VLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN 83 (419)
Q Consensus 9 IIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~ 83 (419)
|||||++||+||++|+++|++|+|+|+++.+||++++...+ ++.+|.|++++...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~--------------------g~~~d~g~~~~~~~ 55 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP--------------------GYRFDLGAHYFFPP 55 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET--------------------TEEEETSS-SEEET
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC--------------------CEEEeeccEEEeCC
Confidence 89999999999999999999999999999999999998643 69999999999874
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.47 E-value=5.3e-13 Score=126.80 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=55.3
Q ss_pred CeEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768 222 SPYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 222 ~~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~ 289 (419)
.+++.+.+| ...+.++|.+.+++.|++|+++++|++|..+ ++++++|.++.+.+.||.||.+++++.
T Consensus 134 ~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 134 GGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGEIRADRVVLAAGAWS 203 (358)
T ss_dssp EEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEEEEECEEEE--GGGH
T ss_pred hhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccccccceeEecccccc
Confidence 456677888 7899999999999999999999999999994 899998999444599999999887764
No 39
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.47 E-value=3e-13 Score=128.66 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=48.1
Q ss_pred eEEEecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768 223 PYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 286 (419)
Q Consensus 223 ~~~~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~ 286 (419)
+..||.-. ...++++|.+.+++.|++|+++++|++|+.+ ++++..|++ +++++.||.||.+.+
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE---
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEEecC
Confidence 34577653 6789999999999999999999999999984 888889999 999999999887653
No 40
>PLN02976 amine oxidase
Probab=99.46 E-value=2.2e-12 Score=134.73 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=51.4
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeec
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA 82 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~ 82 (419)
.+||+|||||++|+++|+.|+++|++|+|||+++.+||++.+.... .++.+|+|++++..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~-------------------~g~pvDlGas~i~G 752 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSS-------------------LSVPVDLGASIITG 752 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeecccc-------------------CCceeccCcEEEec
Confidence 4789999999999999999999999999999999999999876421 25677888877764
No 41
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.46 E-value=7.2e-13 Score=122.83 Aligned_cols=72 Identities=17% Similarity=0.362 Sum_probs=58.6
Q ss_pred CcceEEEECCCchHHHHhhccccCC-CeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceee
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII 81 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~ 81 (419)
...+|||||||++||+||-+|-+.| .+|+|+|+.+++|||.+|+.+. .-.+|+|.+|+.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~--------------------d~~ielGAqwih 79 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFA--------------------DGVIELGAQWIH 79 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcC--------------------CCeEeecceeec
Confidence 4568999999999999999999766 6899999999999999999764 347899999998
Q ss_pred c-Cc-hhhHHHHhcC
Q 014768 82 A-NG-ALVRVLIHTD 94 (419)
Q Consensus 82 ~-~~-~~~~~l~~~~ 94 (419)
. .+ ++.++..+.|
T Consensus 80 G~~gNpVY~la~~~g 94 (498)
T KOG0685|consen 80 GEEGNPVYELAKEYG 94 (498)
T ss_pred CCCCChHHHHHHHhC
Confidence 6 33 4555554443
No 42
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.45 E-value=1e-12 Score=123.37 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=65.4
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceE-EccCcceeecC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYN-VDMIPKFIIAN 83 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~-~d~gp~~~~~~ 83 (419)
+||+|||||++||++|.+|++.|.+|+|+|+++.+||.|.+.... ++. .+.|++++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~--------------------g~~~~~~G~h~f~t~ 61 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDE--------------------TILFHQYGPHIFHTN 61 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCC--------------------CceEEeecceeEecC
Confidence 699999999999999999999999999999999999988775321 333 47889988766
Q ss_pred chhhHHHHhcCCcceeeEEEecceeEEeCCeEEEecCC
Q 014768 84 GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPAT 121 (419)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 121 (419)
...+..++. .+...-.+. .....+.+|+.+.+|.+
T Consensus 62 ~~~v~~~~~-~~~~~~~~~--~~~~~~~~g~~~~~P~~ 96 (377)
T TIGR00031 62 NQYVWDYIS-PFFELNNYQ--HRVLALYNNLDLTLPFN 96 (377)
T ss_pred cHHHHHHHH-hhcccccee--EEEEEEECCeEEccCCC
Confidence 543333222 111111111 11233567888888864
No 43
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.42 E-value=6.1e-12 Score=118.61 Aligned_cols=65 Identities=25% Similarity=0.294 Sum_probs=52.8
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeE-EEcCEEEeCCCCC
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGET-AKCKKVVCDPSYL 288 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~-i~ad~VV~~~~~~ 288 (419)
+.+.|.+| ...++.+|++.+.++|+++++|++|+.|+.. ++.++.+.+ +|++ ++|+.||.+++..
T Consensus 141 al~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~-~dg~~~~~~~~g~~~~~ak~Vin~AGl~ 210 (429)
T COG0579 141 ALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQ-SDGVFVLNTSNGEETLEAKFVINAAGLY 210 (429)
T ss_pred eEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEe-CCceEEEEecCCcEEEEeeEEEECCchh
Confidence 45566666 6789999999999999999999999999984 544556666 7766 9999999888654
No 44
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.37 E-value=5.2e-12 Score=121.61 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=50.8
Q ss_pred EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~ 289 (419)
.+.|.+| ...+.++|.+.+++.|++++++++|++|..+ ++++ .|.++++++.||.||.+++.+.
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCCEEEeCEEEECCCcch
Confidence 4455555 3689999999999999999999999999873 5554 5666555899999998887764
No 45
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.33 E-value=4.1e-11 Score=115.02 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=49.5
Q ss_pred EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~ 289 (419)
++.|.+| ...+.++|.+.+++.|++++.+++|++|..+ ++++ .|+++++++.||.||++++.+.
T Consensus 134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKGSYQANKLVVTAGAWT 200 (380)
T ss_pred EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCCEEEeCEEEEecCcch
Confidence 3455555 3578899999999999999999999999873 6655 4666555899999888777653
No 46
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.32 E-value=1.1e-11 Score=121.92 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=48.5
Q ss_pred ecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC-----CeEEEcCEEEeCCC
Q 014768 227 PLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-----GETAKCKKVVCDPS 286 (419)
Q Consensus 227 p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~-----g~~i~ad~VV~~~~ 286 (419)
+.+|...+.+.|.+.+++.|++|+++++|++|.. +++++++|... ...+.|+.||.+++
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAG 189 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCC
Confidence 3455567899999999999999999999999998 48889888762 34689999987664
No 47
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.31 E-value=1.9e-11 Score=118.71 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=54.2
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~ 289 (419)
+.++|.+| ...++++|.+.+++.|++|+++++|++|+.+ ++++++|++++.++.||.||.+++.+.
T Consensus 189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGGVITADAYVVALGSYS 257 (416)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCcEEeCCEEEECCCcch
Confidence 45566655 4478899999999999999999999999984 777778888777899999998887664
No 48
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.30 E-value=4.5e-11 Score=119.28 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=52.9
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEeCCCCCCc
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g--~~i~ad~VV~~~~~~~~ 290 (419)
++++| .| ...++.++++.+.++|++++++++|++|.. +++++++|++ ++ .+|+||.||.+++.|..
T Consensus 138 a~~~~-dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 138 AVKVP-DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred EEEec-CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 34455 34 356888899999999999999999999998 4888888875 23 47999999999988754
No 49
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.29 E-value=7.3e-11 Score=113.12 Aligned_cols=65 Identities=26% Similarity=0.262 Sum_probs=49.5
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~ 289 (419)
+.+.|.+| ...++.++.+.+.+.|++++++++|++|..+ ++.+ .|++++.++.||.||.+++.+.
T Consensus 137 a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 137 ALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDGV-TVTTADGTYEAKKLVVSAGAWV 204 (376)
T ss_pred EEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCeE-EEEeCCCEEEeeEEEEecCcch
Confidence 34455555 3568888888888899999999999999983 6644 5666444799999998877663
No 50
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.27 E-value=1.1e-10 Score=114.44 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=48.6
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL 288 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~ 288 (419)
+.+.|.+| ..+++++|++.+++.|++|+.+++|++|+. ++. +.|++++.++.||.||++++.+
T Consensus 171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~~-~~v~t~~g~v~A~~VV~Atga~ 236 (460)
T TIGR03329 171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE--GQP-AVVRTPDGQVTADKVVLALNAW 236 (460)
T ss_pred EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee--CCc-eEEEeCCcEEECCEEEEccccc
Confidence 34566665 467899999999999999999999999974 333 4577755579999988776554
No 51
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.26 E-value=8.9e-11 Score=113.79 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=49.4
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C----CeEEEcCEEEeCCCCCC
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E----GETAKCKKVVCDPSYLP 289 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~----g~~i~ad~VV~~~~~~~ 289 (419)
++++|..| ...++++|.+.+++.|++|+.+++|++|..+ ++.++.... . +.+++||.||.+++.+.
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 45566654 3467888999999999999999999999873 665543222 2 23799999999888764
No 52
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.25 E-value=6.9e-11 Score=113.79 Aligned_cols=67 Identities=25% Similarity=0.238 Sum_probs=52.9
Q ss_pred eEEEecCC--cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C---Ce--EEEcCEEEeCCCCCCcc
Q 014768 223 PYIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---GE--TAKCKKVVCDPSYLPNK 291 (419)
Q Consensus 223 ~~~~p~gG--~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~---g~--~i~ad~VV~~~~~~~~~ 291 (419)
++.|+.+= -..++-..++.+.++|+++++.++|+++.. +++ +++|+. | |+ +++|+.||.++++|.+.
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 44455332 236888889999999999999999999998 477 999986 2 33 58899999999998644
No 53
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.22 E-value=2e-10 Score=112.30 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=52.3
Q ss_pred eEEEecCC----cCcHHHHHHHHHHH----cC--cEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768 223 PYIYPLYG----LGELPQAFARLSAV----YG--GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 223 ~~~~p~gG----~~~l~~al~~~~~~----~G--~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~ 289 (419)
+.+.|..| ...++++|++.+++ .| ++|+++++|++|.. +++..+.|+++..++.||.||++++.+.
T Consensus 198 Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-~~~~~~~V~T~~G~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 198 ALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-SNDSLYKIHTNRGEIRARFVVVSACGYS 273 (497)
T ss_pred EEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-cCCCeEEEEECCCEEEeCEEEECcChhH
Confidence 45566543 36799999999998 78 78999999999998 4566777888555799999998887663
No 54
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.22 E-value=4.8e-10 Score=105.93 Aligned_cols=240 Identities=13% Similarity=0.192 Sum_probs=127.8
Q ss_pred cceEEEECCCchHHHHhhccccC----CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcce
Q 014768 4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF 79 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~ 79 (419)
+.++-|||+||++|+||.+|-|. |.+|+|||+.+.+||.+.+.... ..+|..-.|-..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~------------------~~GYv~RgGR~~ 63 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDP------------------ENGYVIRGGRMM 63 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCC------------------CCCeeecCCccc
Confidence 45789999999999999999875 46999999999999999765311 124544333222
Q ss_pred eecCchhhHHHHhc------C---CcceeeEEEeccee---EE--eCCeEEEecCChhhhhccCCCChHhHHHHHHHHHH
Q 014768 80 IIANGALVRVLIHT------D---VTKYLYFKAVDGSF---VY--NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY 145 (419)
Q Consensus 80 ~~~~~~~~~~l~~~------~---~~~~~~~~~~~~~~---~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (419)
-....-+.++|... + +++...+...++.+ ++ .+|..... ..-.. ++.+....+.++
T Consensus 64 ~~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~---------~~~~~-Ls~k~r~eL~kL 133 (500)
T PF06100_consen 64 EFHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT---------DSKFG-LSEKDRMELIKL 133 (500)
T ss_pred cchhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc---------cCcCC-CCHHHHHHHHHH
Confidence 11111122222210 0 01111121112211 11 12221110 11111 233444445554
Q ss_pred HhhcccCCCCccccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEE
Q 014768 146 VQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI 225 (419)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (419)
+..-.+ .+.+.++.|++....+...+..++ ..++.-..+ .++.+.-..+.+|+..+.....-++..
T Consensus 134 ~l~~E~---------~L~~~~I~d~F~~~FF~SnFW~~W---~T~FAFqpW--hSa~E~rRyl~Rf~h~~~~l~~l~~l~ 199 (500)
T PF06100_consen 134 LLTPEE---------DLGDKRIEDWFSESFFESNFWYMW---STMFAFQPW--HSAVEFRRYLHRFIHEIPGLNDLSGLD 199 (500)
T ss_pred hcCCHH---------HhCcccHHHhcchhhhcCchhHhH---HHhhccCcc--hhHHHHHHHHHHHHHhcCCCCCccccc
Confidence 332211 256778888877655555444333 333332222 233444334444444333321134445
Q ss_pred EecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEcC--C-CcEEEEEe--CCe--EE---EcCEEEeCC
Q 014768 226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDE--E-GKVVGVTS--EGE--TA---KCKKVVCDP 285 (419)
Q Consensus 226 ~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~--~-~~v~gV~~--~g~--~i---~ad~VV~~~ 285 (419)
+.++- ..+++..|.+.++++||+|++|++|+.|+.+. + ..++.+.. +|+ +| .-|.|+++.
T Consensus 200 ~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~ 270 (500)
T PF06100_consen 200 RTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTN 270 (500)
T ss_pred cCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEEC
Confidence 55555 57899999999999999999999999999742 2 22344444 443 33 346777654
No 55
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.19 E-value=4.3e-11 Score=105.58 Aligned_cols=119 Identities=16% Similarity=0.294 Sum_probs=77.8
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEE-ccCcceeec
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPKFIIA 82 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~-d~gp~~~~~ 82 (419)
.+|.+|||||++|+++|..|++.|++|+|+||++.+||.|-+..-+ ..+..+ --|||+|..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~------------------~tGIlvHkYGpHIFHT 62 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADD------------------QTGILVHKYGPHIFHT 62 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCC------------------CCCeEEeeccCceeec
Confidence 3799999999999999999999999999999999999999876421 013333 458999987
Q ss_pred Cch-hhHHHHhcCCcceeeEEEecc-eeEEeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHH
Q 014768 83 NGA-LVRVLIHTDVTKYLYFKAVDG-SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYV 146 (419)
Q Consensus 83 ~~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (419)
... +.+-+ ..+.+|.+-.. ...+.+|..+.+|-+ ...+..-+-..+.+..+++|....
T Consensus 63 ~~~~Vwdyv-----~~F~e~~~Y~hrVla~~ng~~~~lP~n-l~ti~ql~G~~~~p~~a~~~i~~~ 122 (374)
T COG0562 63 DNKRVWDYV-----NQFTEFNPYQHRVLALVNGQLYPLPFN-LNTINQLFGKNFTPDEARKFIEEQ 122 (374)
T ss_pred CchHHHHHH-----hhhhhhhhhccceeEEECCeeeecccc-HHHHHHHhCccCCHHHHHHHHHHh
Confidence 653 22211 11122222111 123468888888865 555544332233555566665543
No 56
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.19 E-value=2.5e-10 Score=116.95 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=51.7
Q ss_pred CeEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768 222 SPYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 222 ~~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~ 289 (419)
.+.++|.+| ...++++|.+.+++ |++++.+++|++|..+ ++++. |.+ +|..+.||.||.+++.+.
T Consensus 395 ~g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 395 GGIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred CcEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECCCcEEECCEEEECCCCCc
Confidence 456677777 35799999999988 9999999999999874 66654 666 566678999998887664
No 57
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.17 E-value=7.6e-10 Score=109.65 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CC--eEEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EG--ETAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~---~g--~~i~ad~VV~~~~ 286 (419)
..+.+.|.+.+++.|++|+++++|++|.. +++++++|.. ++ .++.||.||++.+
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 35889999999999999999999999997 4888888876 32 3689999887554
No 58
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.17 E-value=1e-09 Score=105.57 Aligned_cols=65 Identities=28% Similarity=0.290 Sum_probs=50.8
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~ 289 (419)
+++.|.+| ...++++|++.+++.| ..+..+++|..++.+ + ++++|.+++.++.||+||++++.+.
T Consensus 144 a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~i~a~~vv~a~G~~~ 212 (387)
T COG0665 144 GLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGTIEADKVVLAAGAWA 212 (387)
T ss_pred eEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCccEEeCEEEEcCchHH
Confidence 34556565 3578999999999999 566679999999873 4 7788888555599999999887663
No 59
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.16 E-value=9.4e-10 Score=106.54 Aligned_cols=57 Identities=19% Similarity=0.133 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~ 288 (419)
..++.+|++.+.++|++++.+++|++|+..+++++.+|+++..++.|+.||++++.+
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChh
Confidence 467888899999999999999999999763357778888854579999987766544
No 60
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.14 E-value=3.8e-10 Score=109.71 Aligned_cols=56 Identities=27% Similarity=0.378 Sum_probs=45.8
Q ss_pred CcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768 230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 230 G~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~ 286 (419)
+...+.+.|.+.++++|++|+++++|++|..+ +++|+||.. +|+ ++.|+.||.+++
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtG 200 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATG 200 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE---
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccC
Confidence 34678999999999999999999999999994 899999876 354 578999887553
No 61
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.14 E-value=5.6e-10 Score=99.20 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEc-CCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFD-EEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~-~~~~v~gV~~-~g~~i~ad~VV~~~~~~~ 289 (419)
.+-.++|...++++|+.|+-+..|+.+... +++..++|++ +|..+.|+.+|.+++.|.
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 667888899999999999999999998843 4555667776 888899999999888773
No 62
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.14 E-value=6.4e-10 Score=107.96 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL 288 (419)
Q Consensus 234 l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~ 288 (419)
+-+.|.+.+++.|++++++++|++|+. +++++++++.+|+++.||.||.+.+..
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 334466677788999999999999988 478777777788899999998766553
No 63
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.14 E-value=2.7e-09 Score=106.55 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=38.8
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.++||||||+| +|++||..++++|.+|+||||.+.+||.+.
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 47999999999 999999999999999999999999999776
No 64
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.14 E-value=2.6e-10 Score=112.90 Aligned_cols=44 Identities=32% Similarity=0.483 Sum_probs=40.2
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
|++.+||||||||++|+++|+.|+++|++|+|+||++..+|.++
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~ 46 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS 46 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 66789999999999999999999999999999999988777654
No 65
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.13 E-value=2.6e-10 Score=113.05 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC----eEEEcCEEEeCCCCCCc
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG----ETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g----~~i~ad~VV~~~~~~~~ 290 (419)
..++..+++.++++|++++.+++|++|..+ ++ .++|++ ++ .++.|+.||.+++.|.+
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 567888889999999999999999999873 55 345655 43 36999999999988754
No 66
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.13 E-value=8.1e-10 Score=105.39 Aligned_cols=61 Identities=20% Similarity=0.034 Sum_probs=45.2
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~ 289 (419)
++++|.+| ...++.+|.+.+.+. |++|+.+++|++|.. + .|++++.++.||.||.+++.+.
T Consensus 133 ~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 133 GLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRGDVHADQVFVCPGADF 197 (365)
T ss_pred EEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCCcEEeCEEEECCCCCh
Confidence 34455555 356788898887775 999999999999963 2 4666544689999998887653
No 67
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.11 E-value=1.9e-09 Score=105.46 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCe--EEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~---~g~--~i~ad~VV~~~~ 286 (419)
..+.+.|.+.+++.|++|+++++|++|+.++++++++|.. +++ .+.++.||.+++
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtG 189 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATG 189 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecC
Confidence 4688999999999999999999999999854678888765 333 478899887654
No 68
>PRK07121 hypothetical protein; Validated
Probab=99.11 E-value=3.4e-09 Score=105.02 Aligned_cols=56 Identities=27% Similarity=0.386 Sum_probs=45.8
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEc-CEEEeCCC
Q 014768 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPS 286 (419)
Q Consensus 231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~--~i~a-d~VV~~~~ 286 (419)
...+.+.|.+.+++.|++|+++++|++|..++++++++|.. +++ .+.| +.||.+++
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtG 236 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAG 236 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCC
Confidence 45689999999999999999999999999853578999876 333 5788 88887654
No 69
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.10 E-value=5.6e-10 Score=103.26 Aligned_cols=39 Identities=33% Similarity=0.554 Sum_probs=32.9
Q ss_pred ceEEEECCCchHHHHhhccccCC-CeEEEeccCCCCCCcc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGES 43 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~GG~~ 43 (419)
||+||||||.+|+++|.+|+++| .+|+|||+.+......
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~ 40 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED 40 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence 79999999999999999999998 7999999987765444
No 70
>PRK10015 oxidoreductase; Provisional
Probab=99.10 E-value=1.4e-09 Score=105.42 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (419)
Q Consensus 234 l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~ 287 (419)
+-+.|.+.+++.|++++.+++|++|.. +++++.++.++++++.||.||.+.+.
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQAGDDILEANVVILADGV 162 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEeCCeEEECCEEEEccCc
Confidence 334466777788999999999999987 47788888877778999999987654
No 71
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.08 E-value=1.5e-09 Score=105.86 Aligned_cols=67 Identities=13% Similarity=0.010 Sum_probs=48.9
Q ss_pred eEEEecCC---cCcHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEE-E-e-CCe--EEEcCEEEeCCCCCC
Q 014768 223 PYIYPLYG---LGELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGV-T-S-EGE--TAKCKKVVCDPSYLP 289 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~gV-~-~-~g~--~i~ad~VV~~~~~~~ 289 (419)
+.+.|.++ ...+.++|++.+.+ .|++++++++|++|..++++.++.. + + +++ +++||.||++++.+.
T Consensus 172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 45566665 56789999999865 4899999999999987325444332 1 3 342 699999998888774
No 72
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.07 E-value=2.5e-09 Score=104.87 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=50.3
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEE-E-e-CC--eEEEcCEEEeCCCCCC
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-T-S-EG--ETAKCKKVVCDPSYLP 289 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV-~-~-~g--~~i~ad~VV~~~~~~~ 289 (419)
+.+.|.+| ...++++|.+.+++.|++|+++++|++|..++++.+... . + +| .+++||+||++++.+.
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 45667776 578999999999999999999999999987323333322 1 2 23 3699999999888774
No 73
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.07 E-value=1.3e-09 Score=110.16 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=49.2
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEe----CCe--EEEcCEEEeCCCCCCc
Q 014768 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS----EGE--TAKCKKVVCDPSYLPN 290 (419)
Q Consensus 231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~gV~~----~g~--~i~ad~VV~~~~~~~~ 290 (419)
-..++.+|++.++++|++++.+++|++|..++ ++++++|+. +++ ++.||.||.+++.|.+
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 35789999999999999999999999998742 477877764 444 6899999999988753
No 74
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.07 E-value=1.5e-10 Score=99.81 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=53.5
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccCcceeecCch
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA 85 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~gp~~~~~~~~ 85 (419)
+++|||+||+||+||..|+.+|++|+|+||..-+|||..|...+ +-.||.|.++|-..+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~--------------------~g~~DhGAqYfk~~~~ 62 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLD--------------------GGRFDHGAQYFKPRDE 62 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccC--------------------CccccccceeecCCch
Confidence 69999999999999999999999999999999999999988643 3448888888876654
Q ss_pred h
Q 014768 86 L 86 (419)
Q Consensus 86 ~ 86 (419)
+
T Consensus 63 ~ 63 (331)
T COG3380 63 L 63 (331)
T ss_pred H
Confidence 3
No 75
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.06 E-value=3.8e-09 Score=103.71 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=49.9
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEE--e-CCe--EEEcCEEEeCCCCCC
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT--S-EGE--TAKCKKVVCDPSYLP 289 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~--~-~g~--~i~ad~VV~~~~~~~ 289 (419)
+.+.|.+| ...++++|.+.+++.| ++|+++++|++|..++++.+.... + +|+ ++.|++||++++.+.
T Consensus 171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 45667666 5689999999999987 799999999999974344343222 2 353 699999998887764
No 76
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.05 E-value=1e-09 Score=106.53 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=37.6
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
|..++||||||+|.+||+||..++ +|.+|+|+||.+..||.+
T Consensus 1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s 42 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNT 42 (433)
T ss_pred CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCch
Confidence 666799999999999999999975 799999999999887753
No 77
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.05 E-value=1.1e-08 Score=103.03 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEc-CEEEeCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~--~i~a-d~VV~~~~~~ 288 (419)
..++++|.+.++++|++|+++++|++|+.+ ++++++|.. +++ ++.| +.||++++-+
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 568899999999999999999999999984 889988865 343 5788 8888776544
No 78
>PRK12839 hypothetical protein; Provisional
Probab=99.03 E-value=1.4e-08 Score=101.71 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=40.1
Q ss_pred CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
+.++||+|||+|.+|++||+.|+++|.+|+|+||++.+||.+.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 3569999999999999999999999999999999999999875
No 79
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.01 E-value=1.4e-08 Score=102.22 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=39.4
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.++||||||+|++||+||..++++|.+|+|+||.+..||.+.
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 358999999999999999999999999999999999998875
No 80
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.00 E-value=1.4e-08 Score=102.21 Aligned_cols=43 Identities=37% Similarity=0.708 Sum_probs=39.7
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
.++||+|||+|.+|++||..++++|.+|+||||++.+||.+..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 4589999999999999999999999999999999999997753
No 81
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.98 E-value=1.8e-08 Score=100.94 Aligned_cols=42 Identities=31% Similarity=0.500 Sum_probs=39.1
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.++||||||+|++|++||..|+++|.+|+||||++..||.+.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~ 46 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence 478999999999999999999999999999999999998754
No 82
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.98 E-value=1.2e-08 Score=101.33 Aligned_cols=41 Identities=32% Similarity=0.503 Sum_probs=38.0
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.++||||||+| +||+||+.++++|.+|+||||.+..||.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 46899999999 999999999999999999999999888654
No 83
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.98 E-value=4e-09 Score=101.41 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=47.3
Q ss_pred EecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCC
Q 014768 226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287 (419)
Q Consensus 226 ~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~ 287 (419)
+|... ...+.+.|.+.+++.|++++++++|++|..+ ++ ...|+++++++.||.||.+++.
T Consensus 98 ~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 98 FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETSGGEYEADKVILATGG 158 (400)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEECCcEEEcCEEEECCCC
Confidence 54432 4678999999999999999999999999763 44 4456667778999999987654
No 84
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.97 E-value=3.8e-10 Score=94.37 Aligned_cols=42 Identities=33% Similarity=0.453 Sum_probs=39.8
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
+.||+|||||++||+||++||++|.+|+|+||+-.+||-.+.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~ 71 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG 71 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc
Confidence 469999999999999999999999999999999999998873
No 85
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.96 E-value=2.6e-08 Score=100.21 Aligned_cols=42 Identities=29% Similarity=0.501 Sum_probs=38.9
Q ss_pred CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
+.++||||||+|++||+||..++++|.+|+||||.+..||.+
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 457899999999999999999999999999999999988854
No 86
>PRK02106 choline dehydrogenase; Validated
Probab=98.96 E-value=1.7e-08 Score=101.58 Aligned_cols=38 Identities=32% Similarity=0.563 Sum_probs=34.7
Q ss_pred CCCcceEEEECCCchHHHHhhcccc-CCCeEEEeccCCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY 38 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE~~~~ 38 (419)
|..+||+||||||.+|+++|.+|++ +|++|+|||+.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4467999999999999999999999 8999999999864
No 87
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.94 E-value=1.1e-08 Score=98.47 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~ 289 (419)
..+.+.|.+.+++.|++++++++|+++..+ ++.+. |++ +|+++.||.||.+.+...
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVR-LRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 356777778888889999999999999874 66554 555 788899999997776654
No 88
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.94 E-value=3.6e-10 Score=95.22 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=36.0
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
++||+|||||++||+||++|+++|++|+|+|++..+||..+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 589999999999999999999999999999999999998874
No 89
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.92 E-value=1.4e-08 Score=102.77 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDP 285 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~ 285 (419)
..|..+|.+.+++.|++|++++.|++++.+++|++.||.. +|+ .+.|+.||.++
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLAT 225 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIAT 225 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeC
Confidence 4688999999999999999999999998734789999864 453 67899988654
No 90
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=1.3e-08 Score=103.24 Aligned_cols=39 Identities=31% Similarity=0.344 Sum_probs=36.0
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
++||+|||||++||+||..++++|.+|+|+||+..+|+.
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g 73 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA 73 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence 579999999999999999999999999999998887644
No 91
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=8.9e-09 Score=103.59 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=44.8
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~ 286 (419)
..|...|.+.+.+.|+++++++.|+++..+++|+|+||.. +|+ .+.|+.||.+++
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 203 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATG 203 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 4688999998888999999999999999844789999874 453 578999887553
No 92
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.90 E-value=6.9e-09 Score=101.15 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=50.0
Q ss_pred EecCCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEe--CCeEEEcCEEEeCCC
Q 014768 226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS--EGETAKCKKVVCDPS 286 (419)
Q Consensus 226 ~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~-~~~v~gV~~--~g~~i~ad~VV~~~~ 286 (419)
++.++...+.++|.+.++++|++|+++++|++|..++ ++++++|.. ++.++.|+.||.+++
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG 180 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence 5556667899999999999999999999999998742 578888875 346899999887654
No 93
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.90 E-value=2.2e-08 Score=101.03 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~ 286 (419)
..+..+|.+.+++.|+++++++.|++|..+ +++++||.. +|+ .+.|+.||.+++
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 188 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATG 188 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCC
Confidence 358888988888889999999999999984 889988764 453 589999887654
No 94
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=1.3e-08 Score=102.07 Aligned_cols=54 Identities=19% Similarity=0.065 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g--~~i~ad~VV~~~~ 286 (419)
..+.++|.+.+.+.|+++++++.++++..+ +|+|+||.. +| ..+.|+.||.+++
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 458889988888889999999999999984 899999875 23 2678999887553
No 95
>PRK06847 hypothetical protein; Provisional
Probab=98.88 E-value=1.7e-08 Score=96.73 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~ 289 (419)
.+.+.|.+.+++.|++|+++++|++|..+ ++.+ .|.+ +|+++.||.||.+.+..+
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQD-DDGV-TVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCEE-EEEEcCCCEEEcCEEEECcCCCc
Confidence 56677777788889999999999999873 5554 4444 888999999998877653
No 96
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=7.5e-09 Score=104.41 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~ 286 (419)
..|..+|.+.+++.|++|++++.|++|..+++++|+||.. +|+ .+.|+.||.+++
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 209 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATG 209 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 3589999998988999999999999999843478999864 443 688999887553
No 97
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=2.1e-08 Score=101.04 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~ 286 (419)
..|...|.+.+.+.|++++.++.|++++.++++++.||.. +|+ .+.|+.||.+++
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 208 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATG 208 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence 4688999998888999999999999999743688999864 343 578999887553
No 98
>PRK07190 hypothetical protein; Provisional
Probab=98.85 E-value=3.7e-08 Score=97.00 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=35.5
Q ss_pred CCC-cceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 1 m~~-~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
|.. .+||+|||||++||++|+.|+++|.+|+|+||++.+
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 543 489999999999999999999999999999999875
No 99
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.84 E-value=3.3e-08 Score=100.07 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDP 285 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~ 285 (419)
..+.++|.+.+.+.|++|+.++.++++..++++++.||.. +|+ .+.|+.||.++
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILAT 246 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILAT 246 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECC
Confidence 4688999998888999999999999988743688999865 353 67899988755
No 100
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.84 E-value=1.4e-07 Score=94.69 Aligned_cols=42 Identities=29% Similarity=0.587 Sum_probs=39.2
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.++||||||+|.+|++||..++++|.+|+||||.+.+||.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 468999999999999999999999999999999999998764
No 101
>PRK06185 hypothetical protein; Provisional
Probab=98.84 E-value=4.7e-08 Score=94.71 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=34.3
Q ss_pred CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..++||+|||||++|+++|..|+++|++|+|+|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3569999999999999999999999999999999864
No 102
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.83 E-value=1.1e-07 Score=95.23 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHH-HcCcEEEcCCccceEEEcCCCcEEEEEe--CCe---EEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE---TAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~-~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~---~i~ad~VV~~~~~~ 288 (419)
.....++...+. +.|.+|++++.|++|..+ +++++||+. +++ .+.++.||++++.+
T Consensus 193 ~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai 254 (532)
T TIGR01810 193 VSAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAI 254 (532)
T ss_pred EcHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCC
Confidence 344555555554 557999999999999994 889999987 332 35788898877653
No 103
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.83 E-value=5.7e-08 Score=97.07 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=37.5
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
.++||+|||+|++||+||..++++|.+|+|+||.+..||.+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s 55 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGST 55 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCch
Confidence 46899999999999999999999999999999999877743
No 104
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.81 E-value=9.5e-08 Score=94.47 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-C-C--eEEEcCEEEeCCCC
Q 014768 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-E-G--ETAKCKKVVCDPSY 287 (419)
Q Consensus 232 ~~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~gV~~-~-g--~~i~ad~VV~~~~~ 287 (419)
..+.+.|.+.+++ .|++|++++.|++|..+ ++++.+|.. + + ..+.|+.||.+++-
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG 187 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGG 187 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence 4688999998887 69999999999999984 788888876 2 3 46899998876643
No 105
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=5.1e-08 Score=98.19 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~ 286 (419)
..+.++|.+.+++.|++|++++.|++|.. +++++.|+.. +|+ .+.|+.||.+++
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATG 194 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATG 194 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCC
Confidence 46889999989899999999999999998 4888888753 454 589999887654
No 106
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.76 E-value=4.4e-08 Score=94.78 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~ 288 (419)
..+.+.|.+.+.+.|++++++++|++|..+ ++.+ .|++ +|+++.||.||.+.+..
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR-DEGV-TVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEEcCCCC
Confidence 468888888888889999999999999873 5554 3555 78889999999877654
No 107
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.76 E-value=1e-07 Score=94.56 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEcCEEEeCC
Q 014768 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKKVVCDP 285 (419)
Q Consensus 232 ~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~--~i~ad~VV~~~ 285 (419)
..+.++|.+.+++. |++|+.+++|++|.. ++++++||.. +++ .+.|+.||.++
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLAT 193 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLAT 193 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcC
Confidence 46899999888775 899999999999988 4888999876 343 68999988655
No 108
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=3.8e-08 Score=99.21 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=38.1
Q ss_pred CC-CcceEEEECCCchHHHHhhccccCC---CeEEEeccCCCCCCcc
Q 014768 1 MD-EEYDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGES 43 (419)
Q Consensus 1 m~-~~~dvvIIGaGi~Gl~aA~~La~~G---~~V~vlE~~~~~GG~~ 43 (419)
|+ .++||+|||||++||+||..++++| .+|+|+||....||.+
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 44 3589999999999999999999998 8999999999877754
No 109
>PRK08275 putative oxidoreductase; Provisional
Probab=98.75 E-value=1e-07 Score=95.69 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~ 286 (419)
..+.+.|.+.+++.|++|++++.|++|..++++++.||.. +|+ .+.|+.||.+++
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG 197 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCG 197 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCC
Confidence 4688899998999999999999999999833678888863 454 588999886553
No 110
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.75 E-value=6.5e-09 Score=100.07 Aligned_cols=43 Identities=28% Similarity=0.486 Sum_probs=40.3
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
.+|||+|||||++|++||+.|+++|++|+|+||++.+|....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 4799999999999999999999999999999999999987665
No 111
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.74 E-value=1.4e-07 Score=94.18 Aligned_cols=54 Identities=7% Similarity=0.119 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHHHc-CcEEEcCCccceEEEcC-CCcEEEEEe--CCe--EEEcCEEEeCC
Q 014768 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDE-EGKVVGVTS--EGE--TAKCKKVVCDP 285 (419)
Q Consensus 232 ~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~-~~~v~gV~~--~g~--~i~ad~VV~~~ 285 (419)
..+.++|.+.+++. |++|++++.|+++..++ +++++||.. +|+ .+.|+.||.++
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILAT 193 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILAT 193 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcC
Confidence 46888998888754 99999999999999842 378999876 554 37899988655
No 112
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=9.5e-08 Score=95.72 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCC-cEEEEEe----CCe--EEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG-KVVGVTS----EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~-~v~gV~~----~g~--~i~ad~VV~~~~ 286 (419)
..+.+.|.+.+++.|++|++++.|+++..+ ++ +++||.. +|+ .+.|+.||.+++
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~-~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATG 194 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVD-ENREVIGAIFLDLRNGEIFPIYAKATILATG 194 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEe-CCcEEEEEEEEECCCCcEEEEEcCcEEECCC
Confidence 468888988888899999999999999985 55 4888753 443 589999887553
No 113
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=1.6e-07 Score=94.65 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCC---CcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE---GKVVGVTS----EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~---~~v~gV~~----~g~--~i~ad~VV~~~~ 286 (419)
..+.+.|.+.+++.|++|++++.|++|+.+++ +++.||.. +|+ .+.|+.||.+++
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 203 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATG 203 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCC
Confidence 46889999999999999999999999997422 78988864 454 578999887553
No 114
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.72 E-value=8.1e-09 Score=92.39 Aligned_cols=41 Identities=37% Similarity=0.520 Sum_probs=38.7
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
++||+|||||++||+||+.|+++|++|+|+||++.+||.++
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~ 61 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW 61 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 58999999999999999999999999999999999998754
No 115
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=2.1e-07 Score=94.54 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=35.8
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
++||||||||++||+||..++++|.+|+|+||++..||.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 589999999999999999999999999999999876653
No 116
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.70 E-value=1.1e-08 Score=91.82 Aligned_cols=41 Identities=32% Similarity=0.433 Sum_probs=38.5
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
++||+|||||++||+||+.|+++|++|+|+||+..+||.++
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~ 65 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMW 65 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccc
Confidence 58999999999999999999999999999999999998654
No 117
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.70 E-value=1.3e-07 Score=91.42 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=58.9
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCccc
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~~~ 292 (419)
+.+.|..| ...++++|++.|++.|+.|..|++|++|.. +.++..+|++.-..|+|.+||.+++.|...+
T Consensus 175 ~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G~iet~~~VNaaGvWAr~V 246 (856)
T KOG2844|consen 175 GLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHGSIETECVVNAAGVWAREV 246 (856)
T ss_pred eeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCcceecceEEechhHHHHHh
Confidence 45567777 457999999999999999999999999999 5787889999666799999999999986443
No 118
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.69 E-value=2.8e-07 Score=91.49 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C--Ce--EEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E--GE--TAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~--g~--~i~ad~VV~~~~ 286 (419)
..+.++|.+.++ .|++|+.++.|++|.. +++++.||.. + |+ .+.|+.||++++
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATG 187 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASG 187 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecC
Confidence 358888888775 6999999999999998 4888998876 2 32 689999887653
No 119
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.69 E-value=6.1e-07 Score=88.21 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~ 288 (419)
..+.+.|.+.+++.|++++.+ .|+.+.. +++++++|..+++.+.|+.||.+++-+
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~~g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFLDGELLKFDATVIATGGF 174 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEECCEEEEeCeEEECCCcC
Confidence 468999999999999999876 7999887 488899988888889999988766544
No 120
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.68 E-value=3.1e-07 Score=91.48 Aligned_cols=37 Identities=35% Similarity=0.616 Sum_probs=34.1
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
|..++|+||||+|.+|.++|.+|++.|++|+|||+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4567999999999999999999999999999999963
No 121
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.67 E-value=1.9e-07 Score=101.15 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=39.0
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.++||||||+|.+|++||..++++|.+|+||||.+..||.+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 358999999999999999999999999999999999999654
No 122
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.67 E-value=3.7e-07 Score=92.41 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~ 286 (419)
..+...|.+.+++.| ++|++++.|++|..+ +++++||.. +++ .+.|+.||.+++
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 192 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATG 192 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCC
Confidence 457778888887776 999999999999884 788888742 443 689999887654
No 123
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.63 E-value=8.2e-07 Score=85.20 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--eEEEcCEEEeCCCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYL 288 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g--~~i~ad~VV~~~~~~ 288 (419)
++.++|.+.+++.|++++++++|+++.. +++++..+.+ +| ..++||.||++++-.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~-~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEF-EGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 7899999999999999999999999998 4777777655 44 358999988766543
No 124
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.63 E-value=2.2e-08 Score=97.64 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=40.8
Q ss_pred CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
....+|+|||||++||+||.+|.++|++|+|+||++.+||.+..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34589999999999999999999999999999999999999864
No 125
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.62 E-value=1.7e-07 Score=94.59 Aligned_cols=36 Identities=31% Similarity=0.290 Sum_probs=33.0
Q ss_pred EEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 7 vvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
|||||+|++||+||..++++|.+|+|+||++.+||.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g 36 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA 36 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence 699999999999999999999999999999966543
No 126
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.61 E-value=2.8e-08 Score=97.77 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=41.5
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
|+.+|||+|||||.+|+.||..|++.|++|+|+|+++.+||.|.
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 77889999999999999999999999999999999989999763
No 127
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.60 E-value=2.9e-08 Score=97.71 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=40.6
Q ss_pred CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
+.+|||+|||||++|+.||..|++.|++|+|+|+++.+||.|..
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 34799999999999999999999999999999999999998753
No 128
>PRK06116 glutathione reductase; Validated
Probab=98.59 E-value=2.6e-08 Score=97.67 Aligned_cols=43 Identities=28% Similarity=0.462 Sum_probs=39.8
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
|+.+|||+|||||++|++||..|+++|++|+|+|++ .+||.|.
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 777899999999999999999999999999999996 7899764
No 129
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.59 E-value=1.1e-06 Score=88.36 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEeCC
Q 014768 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDP 285 (419)
Q Consensus 232 ~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~----~g--~~i~ad~VV~~~ 285 (419)
..|.++|.+.+.+. |++++.++.|++|+.+ ++++.||.. +| ..+.|+.||.+.
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILAT 191 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLAT 191 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcC
Confidence 46888998877664 7899999999999984 889998763 45 468899988755
No 130
>PRK06370 mercuric reductase; Validated
Probab=98.59 E-value=3.4e-08 Score=97.21 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=38.8
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
|+.+|||||||||++|++||.+|++.|++|+|+|+. .+||.|.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 778899999999999999999999999999999996 5666654
No 131
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.57 E-value=7.9e-07 Score=83.62 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=46.9
Q ss_pred EEecCC----cCcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe------CCeEEEcCEEEeCCC
Q 014768 225 IYPLYG----LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS------EGETAKCKKVVCDPS 286 (419)
Q Consensus 225 ~~p~gG----~~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~------~g~~i~ad~VV~~~~ 286 (419)
.+...| +++|++.|.+.+.+. |+++++|++|++|...++|. +.|++ +..+++|+.|++.++
T Consensus 170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAG 241 (488)
T PF06039_consen 170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAG 241 (488)
T ss_pred eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCc
Confidence 355566 679999999999888 99999999999999854553 33332 346899999987664
No 132
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.56 E-value=3.5e-06 Score=79.99 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=49.1
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--eEEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g--~~i~ad~VV~~~~~~ 288 (419)
.++.++|.+.++++|++|+.+++|+++.. +++++++|.+ ++ ..+.||.||.+++.|
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 57899999999999999999999999998 4888988886 54 489999999888776
No 133
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.56 E-value=3.8e-08 Score=96.79 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=39.5
Q ss_pred CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
|++|||+|||||++|++||..+++.|++|+|+|+++.+||.|-
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 2469999999999999999999999999999999889999873
No 134
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.56 E-value=2e-07 Score=87.36 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768 234 LPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (419)
Q Consensus 234 l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~ 287 (419)
+.+.+.+.++.+ +.++ ..++|++|.. ++++++||.+ +|+.+.||.||.+++.
T Consensus 97 y~~~~~~~l~~~~nl~i-~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTI-IQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEE-EES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEE-EEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 344455566664 4565 5789999999 5999999999 9999999999877665
No 135
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=5.2e-08 Score=96.14 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=40.6
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
|...|||+|||||.+|+.||..|++.|++|+|+|+. .+||.|..
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 778899999999999999999999999999999996 78998843
No 136
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.53 E-value=5.9e-08 Score=95.58 Aligned_cols=44 Identities=32% Similarity=0.518 Sum_probs=39.6
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
|+++|||+|||||++|++||.+|++.|++|+|+|++ .+||.|..
T Consensus 1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN 44 (466)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence 677899999999999999999999999999999995 67777653
No 137
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.53 E-value=7.2e-08 Score=93.97 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~ 286 (419)
..+-+.|.+.+++.|++++.++ |.++..+++|.+++|++ +|++++||.||=+.+
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG 208 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASG 208 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCC
Confidence 3567778888999999998885 77777766888889998 899999999995443
No 138
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.51 E-value=6.4e-08 Score=94.58 Aligned_cols=42 Identities=33% Similarity=0.511 Sum_probs=38.5
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC-CCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY-YGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~-~GG~~~ 44 (419)
++|||+|||||++|++||..|++.|++|+|+||++. +||.|-
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 479999999999999999999999999999999875 699764
No 139
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.51 E-value=6.6e-08 Score=94.59 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=39.0
Q ss_pred CCcceEEEECCCchHHHHhhccccCCCeEEEeccCC-CCCCccc
Q 014768 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYGGESS 44 (419)
Q Consensus 2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~-~~GG~~~ 44 (419)
|++|||||||||.+|++||.+|+++|++|+|+|+.+ .+||.|.
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 257999999999999999999999999999999987 4799875
No 140
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.50 E-value=6.5e-08 Score=91.71 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=32.4
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
++||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 4799999999999999999999999999999987753
No 141
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.50 E-value=8.8e-08 Score=92.21 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=35.2
Q ss_pred CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
++.+||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 45689999999999999999999999999999998765
No 142
>PRK09126 hypothetical protein; Provisional
Probab=98.49 E-value=8.3e-08 Score=92.53 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=35.6
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
|+ ++||+|||||++||++|..|+++|++|+|+||.+.+
T Consensus 1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 55 689999999999999999999999999999998875
No 143
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.49 E-value=8.5e-08 Score=92.59 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=37.1
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
|++..||+|||||++||++|..|+++|++|+|+||.+.++
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 7778899999999999999999999999999999987653
No 144
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.47 E-value=1e-07 Score=92.56 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=35.2
Q ss_pred CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
...+||+|||||++||++|..|+++|++|+|+||++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 34689999999999999999999999999999998865
No 145
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.47 E-value=1e-07 Score=95.56 Aligned_cols=44 Identities=34% Similarity=0.562 Sum_probs=41.0
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC--CCCCccc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGESS 44 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~--~~GG~~~ 44 (419)
|..++||||||+|++||+||..++++|.+|+||||.+ .+||.+.
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 6778999999999999999999999999999999999 7888664
No 146
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.47 E-value=9.4e-08 Score=92.82 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=34.3
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
||||||||++|++||..+|++|.+|+|+|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999998764
No 147
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.46 E-value=1e-07 Score=92.27 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=34.5
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
||..+||+|||||++||++|..|+++|++|+|+|+.
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 677899999999999999999999999999999996
No 148
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.46 E-value=1.4e-07 Score=91.61 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=42.4
Q ss_pred CCcceEEEECCCchHHHHhhccccCCCe-EEEeccCCCCCCcccccc
Q 014768 2 DEEYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESSSLN 47 (419)
Q Consensus 2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~~~GG~~~t~~ 47 (419)
++++||+|||||++||++|++|.++|.. ++||||++.+||.++...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~r 52 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR 52 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhcc
Confidence 4578999999999999999999999988 999999999999987654
No 149
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.46 E-value=1e-07 Score=93.24 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=37.6
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
++|||+|||||++|+.||..|++.|++|+|+||. .+||.|.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 4699999999999999999999999999999995 6899764
No 150
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.46 E-value=1.3e-07 Score=93.26 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=41.0
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEecc------CCCCCCcccc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR------NDYYGGESSS 45 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~------~~~~GG~~~t 45 (419)
|+++||++|||||++|++||.+|++.|.+|+|+|+ ...+||.|..
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 77789999999999999999999999999999998 4678898754
No 151
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.45 E-value=1.3e-07 Score=87.39 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=35.1
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
|||+|||||++||++|+.|++.|.+|+|+||++.++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999988765
No 152
>PRK08013 oxidoreductase; Provisional
Probab=98.45 E-value=1.3e-07 Score=91.27 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=35.1
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
|+ ++||+|||||++|+++|+.|+++|++|+|+|+++.+
T Consensus 1 m~-~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 1 MQ-SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CC-cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 44 689999999999999999999999999999998864
No 153
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.44 E-value=1.2e-07 Score=95.09 Aligned_cols=44 Identities=25% Similarity=0.451 Sum_probs=40.0
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
|...|||+|||||++||+||..|+++|++|+|+|++ .+||.+..
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 777799999999999999999999999999999995 68887653
No 154
>PLN02661 Putative thiazole synthesis
Probab=98.44 E-value=1.2e-07 Score=87.49 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=37.5
Q ss_pred cceEEEECCCchHHHHhhccccC-CCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~~~GG~~~ 44 (419)
++||+|||||++|++||+.|+++ |++|+|+||+..+||..+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 58999999999999999999976 899999999999988554
No 155
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.44 E-value=1.2e-07 Score=92.89 Aligned_cols=40 Identities=28% Similarity=0.436 Sum_probs=37.6
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
+|||+|||||++|++||..+++.|++|+|+|+ +.+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 68999999999999999999999999999999 57999875
No 156
>PRK07045 putative monooxygenase; Reviewed
Probab=98.44 E-value=1.3e-07 Score=90.92 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=35.9
Q ss_pred CC-CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 1 m~-~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
|+ ..+||+|||||++||++|..|+++|++|+|+||++.+
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 44 6789999999999999999999999999999998865
No 157
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.43 E-value=1.5e-07 Score=92.71 Aligned_cols=41 Identities=32% Similarity=0.478 Sum_probs=38.2
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
++|||||||||++|++||.+|++.|++|+|+|+ +.+||.|.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 469999999999999999999999999999999 78899774
No 158
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.42 E-value=1.3e-07 Score=88.36 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=40.4
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN 47 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 47 (419)
.+++|||||++|++||..||+.|++|.++||++.+||++..++
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 4799999999999999999999999999999999999987664
No 159
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.42 E-value=1.6e-07 Score=92.58 Aligned_cols=41 Identities=32% Similarity=0.545 Sum_probs=38.2
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
.|||+|||||++|+.||..|++.|++|+|+|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 38999999999999999999999999999999 889998754
No 160
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=1.6e-07 Score=92.57 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=38.7
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
.+|||||||||++|++||..|++.|++|+|+|++. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 57999999999999999999999999999999987 9997743
No 161
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.40 E-value=1.7e-07 Score=89.95 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=33.5
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
|+ .+||+|||||++||++|..|+++|++|+|+|+.+
T Consensus 1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 54 5899999999999999999999999999999875
No 162
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=1.8e-07 Score=89.71 Aligned_cols=44 Identities=27% Similarity=0.305 Sum_probs=41.0
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 46 (419)
...+|+|||||.+||++|..|.++|++|+|+||.+.+||.+...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 35799999999999999999999999999999999999998754
No 163
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.39 E-value=2.2e-07 Score=91.80 Aligned_cols=42 Identities=40% Similarity=0.529 Sum_probs=37.8
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccC-CCCCCc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGE 42 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~-~~~GG~ 42 (419)
|+.+|||||||||++|+.||+.+|+.|.+|+++|++ +.+|+.
T Consensus 1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CCccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 566799999999999999999999999999999998 467653
No 164
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.38 E-value=2.4e-07 Score=89.29 Aligned_cols=45 Identities=31% Similarity=0.491 Sum_probs=42.0
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
|+.+||+||||+|.+|.+||.++++.|.+|.++|+...+||.|-.
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 677899999999999999999999999999999999999998753
No 165
>PRK14694 putative mercuric reductase; Provisional
Probab=98.37 E-value=2.5e-07 Score=91.14 Aligned_cols=57 Identities=11% Similarity=0.170 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCc
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~ 290 (419)
..+.+.+.+.+++.|+++++++.|++|..+ ++. ..+.++++++.+|.||.+++..|.
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAGTLRAEQLLVATGRTPN 274 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCCEEEeCEEEEccCCCCC
Confidence 357888888999999999999999999863 443 345555667999999988766553
No 166
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.37 E-value=2.6e-07 Score=88.94 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=34.9
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
+||+|||||++|++||..|+++|++|+|+||++..+..|
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c 39 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC 39 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc
Confidence 589999999999999999999999999999987655444
No 167
>PLN02785 Protein HOTHEAD
Probab=98.36 E-value=6.3e-06 Score=82.83 Aligned_cols=35 Identities=37% Similarity=0.628 Sum_probs=32.1
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..||+||||||.+|+++|.+|++ +++|+|||+.+.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 35999999999999999999999 699999999764
No 168
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.36 E-value=2.6e-07 Score=89.49 Aligned_cols=54 Identities=11% Similarity=-0.038 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~ 288 (419)
.+.++|.+.+++.|++++.+++|++|+.+ ++.+ .|++ +|++++||.||.+.+.+
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~g~~~~a~~vVgAdG~~ 167 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRS-GDDW-LLTLADGRQLRAPLVVAADGAN 167 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEEEEecCCC
Confidence 56677778778889999999999999874 5554 3555 78889999999777654
No 169
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.36 E-value=2.6e-07 Score=88.85 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~ 288 (419)
..+.+.|.+.+.+.| ++++.+++|++|..+ ++.+ .|++ +|+++.||.||.+.+..
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECCCCEEEeeEEEEeCCCC
Confidence 357777888888888 999999999999874 6655 4555 88889999998766543
No 170
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.36 E-value=1.8e-07 Score=81.27 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=32.4
Q ss_pred EEECCCchHHHHhhccccCCCe-EEEeccCCCCCCcccc
Q 014768 8 IVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESSS 45 (419)
Q Consensus 8 vIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~~~GG~~~t 45 (419)
+|||||++||++|+.|.++|.+ |+|||+++.+||.+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 7999999999999999999999 9999999999999874
No 171
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.36 E-value=6.9e-06 Score=76.76 Aligned_cols=57 Identities=25% Similarity=0.368 Sum_probs=50.5
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (419)
Q Consensus 231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~ 288 (419)
.-.+++.+.+.++++|++|+++|+|..|+. +++.+.+|.+ +|+++.||+||.+++--
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcc
Confidence 457889999999999999999999999999 5887888888 88899999999988653
No 172
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.35 E-value=2.6e-07 Score=89.98 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=33.4
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..+||+|||||++|++||..|+++|++|+|+||++.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 358999999999999999999999999999999753
No 173
>PRK07236 hypothetical protein; Provisional
Probab=98.35 E-value=2.9e-07 Score=88.46 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=33.6
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+..||+|||||++||++|..|+++|++|+|+||++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357999999999999999999999999999999864
No 174
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.34 E-value=3e-07 Score=96.21 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=39.5
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
..||+|||||++||+||+.|++.|++|+|+|+++.+||.++.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 469999999999999999999999999999999999999863
No 175
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.34 E-value=3.8e-06 Score=76.23 Aligned_cols=221 Identities=12% Similarity=0.158 Sum_probs=107.9
Q ss_pred ceEEEECCCchHHHHhhccccC----CCeEEEeccCCCCCCcccccchHHHHHhhcCCCCCCCCCCCCcceEEccC---c
Q 014768 5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMI---P 77 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~g---p 77 (419)
..+-|||+|++||++|..|-|. |.++.++|--+..||..-..... +.||..-|+..-+-. -...+|+. |
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p--~~GfV~RGGRemEnh--fEc~WDlfrsIP 98 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSP--HHGFVVRGGREMENH--FECLWDLFRSIP 98 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCc--ccceeecCcHHHHHH--HHHHHHHHhcCc
Confidence 4588999999999999999775 57999999999999988655322 111211110000000 00001111 1
Q ss_pred ceeecCchhhHHHHhcCCcceeeEEEecce---eE--EeCCeEEEecCChhhhhccCCCChHhHHHHHHHHHHHhhcccC
Q 014768 78 KFIIANGALVRVLIHTDVTKYLYFKAVDGS---FV--YNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN 152 (419)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (419)
++=...-.+.+.+.+ +...+|. ++ -.+|..+.. ...| . +.+...+...+++..-.+
T Consensus 99 SLei~naSvldEfy~--------~d~~dPn~s~cRli~k~g~rv~d----dg~~-----t-l~~~~~~ei~kL~~t~EE- 159 (587)
T COG4716 99 SLEIPNASVLDEFYW--------LDKDDPNSSNCRLIHKRGRRVDD----DGSF-----T-LNNKARKEIIKLLMTPEE- 159 (587)
T ss_pred cccCCCcHHHHHHHh--------ccCCCCCccceeeeecccccccc----cccc-----c-cChhhHHHHHHHHcCcHH-
Confidence 111111111121111 1112221 11 122222111 0111 1 133333444444433221
Q ss_pred CCCccccccCCcccHHHHHHHcCCChhHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccCCCeEEEecCC-c
Q 014768 153 DPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG-L 231 (419)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~gG-~ 231 (419)
.+.+.++.+|+....+...+. -++..++.-..+ .++.++-..+.+++..+.....-++.-+.++. .
T Consensus 160 --------~L~~~tI~d~Fse~FF~sNFW---~yW~tmFAFekW--hSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQY 226 (587)
T COG4716 160 --------KLDDLTIEDWFSEDFFKSNFW---YYWQTMFAFEKW--HSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQY 226 (587)
T ss_pred --------hcCCccHHHhhhHhhhhhhHH---HHHHHHHhhhHH--HHHHHHHHHHHHHHHHhcCCCcchhhcccccchH
Confidence 256788888887654544333 223333322222 12223222233333222211011222233443 5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEc
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFD 261 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~ 261 (419)
.+++..|...++++|++|-+++.|+.|.++
T Consensus 227 eSlvlPli~yL~~H~Vdf~~~~~Vedi~v~ 256 (587)
T COG4716 227 ESLVLPLITYLKSHGVDFTYDQKVEDIDVD 256 (587)
T ss_pred HHHHHHHHHHHHHcCCceEeccEEeeeeec
Confidence 789999999999999999999999999985
No 176
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.34 E-value=2.9e-07 Score=85.26 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=36.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
|||+|||||++||+||..|++.|++|+|+|+++ +||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 699999999999999999999999999999987 7876653
No 177
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.34 E-value=3.2e-07 Score=88.34 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=35.1
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
..+||+|||||++||++|+.|++.|++|+|+||++.+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 36899999999999999999999999999999988753
No 178
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.34 E-value=2.9e-07 Score=88.49 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=31.3
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
|||+|||||++|++||..|+++|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 179
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.34 E-value=3.3e-07 Score=90.75 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~ 290 (419)
.+.+.+.+.+++.|+++++++.|++|... ++.+ .+.+ +|+++.+|.||.+.+..|+
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM-DDKI-KVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCeE-EEEECCCCEEEcCEEEEeeCCCCC
Confidence 46778888889999999999999999863 4443 3444 7888999999988776653
No 180
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.33 E-value=3.3e-07 Score=96.55 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=39.1
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..+|+|||||++||+||..|+++|++|+|+|+++.+||..+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 47899999999999999999999999999999999999876
No 181
>PRK06184 hypothetical protein; Provisional
Probab=98.33 E-value=3.5e-07 Score=90.99 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=34.8
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
+++||+|||||++||++|..|++.|++|+|+||++.+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4689999999999999999999999999999998765
No 182
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.31 E-value=9.8e-07 Score=80.25 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=32.6
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
...||||||||++|.+.|+.|++.|.+|+|+||.-
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 45899999999999999999999999999999953
No 183
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=4e-07 Score=83.39 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=37.5
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN 47 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 47 (419)
+.+||+|||||++||+||.+++++|.+++|++....+||......
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 579999999999999999999999999556666677787766543
No 184
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.31 E-value=3.7e-07 Score=87.81 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=33.2
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+||+|||||++||++|..|+++|++|+|+||.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999999874
No 185
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.31 E-value=4.2e-07 Score=87.62 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=33.5
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+++||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 458999999999999999999999999999999763
No 186
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.31 E-value=4e-07 Score=89.68 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=35.9
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
|||||||||++|++||..|++.|++|+|+||.+ +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 699999999999999999999999999999976 777753
No 187
>PRK13748 putative mercuric reductase; Provisional
Probab=98.30 E-value=4.1e-07 Score=91.95 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCc
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~ 290 (419)
..+.+.+.+.+++.|++++++++|++|..+ ++.+ .+.++++++.+|.||.+++..|+
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHGELRADKLLVATGRAPN 366 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecCCeEEeCEEEEccCCCcC
Confidence 357778888889999999999999999863 5543 35555557999999988877654
No 188
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.30 E-value=4.8e-07 Score=87.12 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=34.6
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
||||||||++|+++|+.|+++|++|+|+|+++..||.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999999877754
No 189
>PRK12831 putative oxidoreductase; Provisional
Probab=98.29 E-value=5e-07 Score=88.58 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=39.3
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
...||+|||||++||+||.+|++.|++|+|+|+++.+||.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 347999999999999999999999999999999999999875
No 190
>PRK09897 hypothetical protein; Provisional
Probab=98.28 E-value=6.1e-06 Score=81.54 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=34.0
Q ss_pred ceEEEECCCchHHHHhhccccCC--CeEEEeccCCCCC-Ccc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYG-GES 43 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~G-G~~ 43 (419)
.+|+|||||.+|+++|..|.+.+ .+|+|+|++..+| |..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~a 43 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMP 43 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCccee
Confidence 38999999999999999998765 5899999999888 443
No 191
>PTZ00058 glutathione reductase; Provisional
Probab=98.28 E-value=5.3e-07 Score=89.86 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=37.6
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.+|||||||||.+|.+||..+++.|.+|+|+|++ .+||.|-
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 3689999999999999999999999999999996 7899764
No 192
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.27 E-value=5.2e-07 Score=87.07 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=32.7
Q ss_pred CcceEEEECCCchHHHHhhccccC---CCeEEEeccCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVD---GLKVLHMDRND 37 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~---G~~V~vlE~~~ 37 (419)
+.+||+|||||++|+++|+.|+++ |++|+|+||..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 568999999999999999999998 99999999963
No 193
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.26 E-value=5.9e-07 Score=86.28 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=42.9
Q ss_pred CcHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~ 288 (419)
..+.+.|.+.+.+ .|++++++++|++|..+ ++.++ |++ +|+++.||.||.+.+..
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~-v~~~~g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYVR-VTLDNGQQLRAKLLIAADGAN 161 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeEE-EEECCCCEEEeeEEEEecCCC
Confidence 4577788888877 49999999999999874 55543 555 78889999999777654
No 194
>PRK06753 hypothetical protein; Provisional
Probab=98.26 E-value=5.6e-07 Score=86.12 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=33.2
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 89999999999999999999999999999998763
No 195
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.26 E-value=1.6e-05 Score=70.85 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=37.1
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
.|||||+|++||+|+-.+-..|-.|+++|++...||..-.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK 50 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence 5999999999999999999998889999999999998753
No 196
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.26 E-value=6.3e-07 Score=90.44 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=37.4
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
+.+||||||+|++||+||..++++|.+|+|+||.+..||.+
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s 42 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS 42 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence 46799999999999999999999999999999999877643
No 197
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.23 E-value=6.7e-07 Score=85.94 Aligned_cols=56 Identities=21% Similarity=0.121 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~ 288 (419)
..+-+.|.+.+.+.+ ++++.+++|+.+..+ ++.+..... +|++++||.||.+-+..
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceEEEEcCCCcEEecCEEEECCCCc
Confidence 457777778887776 899999999999984 677764434 78999999999776554
No 198
>PLN02985 squalene monooxygenase
Probab=98.23 E-value=9.5e-07 Score=87.51 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=33.4
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..+||+|||||++|+++|..|+++|++|+|+||.+.
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 358999999999999999999999999999999754
No 199
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.23 E-value=9.1e-07 Score=81.66 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=35.8
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
+-+||||||||+||++|..|+++|++|+|+|+...+=|.-.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~ 42 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGT 42 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCc
Confidence 35899999999999999999999999999999877655433
No 200
>PRK14727 putative mercuric reductase; Provisional
Probab=98.22 E-value=7.4e-07 Score=88.03 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=40.0
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
.++|++|||||.+|+++|..|++.|.+|+++|+++.+||.|..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 3589999999999999999999999999999999899998853
No 201
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.21 E-value=8.2e-07 Score=84.96 Aligned_cols=55 Identities=9% Similarity=-0.009 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~ 288 (419)
..+-+.|.+.+++.+ ++++++++|++|..+ ++.+ .|.+++++++||.||.+-+..
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~~~~~adlvIgADG~~ 159 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISH-NDYS-IIKFDDKQIKCNLLIICDGAN 159 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEc-CCeE-EEEEcCCEEeeCEEEEeCCCC
Confidence 456677777777765 889999999999874 5554 356644589999999765543
No 202
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.21 E-value=8.9e-07 Score=86.51 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=31.8
Q ss_pred ceEEEECCCchHHHHhhcccc----CCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSV----DGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~----~G~~V~vlE~~~~ 38 (419)
|||+|||||++|+++|+.|++ +|++|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 699999999999999999999 8999999999654
No 203
>PRK06834 hypothetical protein; Provisional
Probab=98.21 E-value=9e-07 Score=87.35 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~ 288 (419)
.+-+.|.+.+++.|++|+.+++|++|..+ ++.+ .|++ +|++++||.||.+.+..
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~-~~~v-~v~~~~g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQD-DTGV-DVELSDGRTLRAQYLVGCDGGR 155 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEEEEecCCC
Confidence 45566777778889999999999999984 5554 3455 67789999998766543
No 204
>PRK07538 hypothetical protein; Provisional
Probab=98.21 E-value=8.6e-07 Score=86.03 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=32.7
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
.||+|||||++||++|..|+++|++|+|+||++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 38999999999999999999999999999998754
No 205
>PRK08244 hypothetical protein; Provisional
Probab=98.21 E-value=8.7e-07 Score=88.04 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=33.7
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
++||+|||||++||++|..|+++|++|+|+||++.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 489999999999999999999999999999998754
No 206
>PRK06126 hypothetical protein; Provisional
Probab=98.20 E-value=9.4e-07 Score=88.95 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=33.5
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.++||+|||||++||++|..|+++|++|+|+||++.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 358999999999999999999999999999999864
No 207
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.20 E-value=8.8e-07 Score=85.34 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=33.3
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
++||+|||||++||++|..|+++|++|+|+||++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 57999999999999999999999999999999874
No 208
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.20 E-value=9.4e-07 Score=92.17 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=39.3
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
..+|+|||||++||+||..|+++|++|+|+|+++.+||.++.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 468999999999999999999999999999999999998763
No 209
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.20 E-value=1.2e-06 Score=78.28 Aligned_cols=41 Identities=34% Similarity=0.545 Sum_probs=36.4
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCC--CCCCcc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGES 43 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~--~~GG~~ 43 (419)
.+.||||||+|++||+||+.||.+|++|+|+|+.. .+||.+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 36899999999999999999999999999999865 466655
No 210
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.19 E-value=9.7e-07 Score=87.42 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=35.4
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
.+|+|||||++||++|..|.+.|++|+++||++.+||.++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 37999999999999999999999999999999999999873
No 211
>PLN02507 glutathione reductase
Probab=98.19 E-value=1.1e-06 Score=87.11 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~ 290 (419)
..+.+.+.+.+++.|+++++++.|++|..+ ++++ .+.+ +|+++.+|.||.+.+..|+
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEECCCcEEEcCEEEEeecCCCC
Confidence 346677777888999999999999999863 4444 3444 7788999999988776553
No 212
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.18 E-value=8.8e-06 Score=67.38 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=29.9
Q ss_pred EEECCCchHHHHhhccccC-----CCeEEEeccCCCCC-Cccc
Q 014768 8 IVLGTGLKECILSGLLSVD-----GLKVLHMDRNDYYG-GESS 44 (419)
Q Consensus 8 vIIGaGi~Gl~aA~~La~~-----G~~V~vlE~~~~~G-G~~~ 44 (419)
+|||+|++|++++..|.+. ..+|+|+|+++. | |...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~ 42 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAY 42 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccC
Confidence 5999999999999999876 479999999666 5 4443
No 213
>PLN02463 lycopene beta cyclase
Probab=98.18 E-value=1.1e-06 Score=85.31 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=32.8
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 58999999999999999999999999999999753
No 214
>PRK07588 hypothetical protein; Provisional
Probab=98.18 E-value=1e-06 Score=84.88 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=32.0
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
||+|||||++||++|..|+++|++|+|+||.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 8999999999999999999999999999998643
No 215
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.17 E-value=1.2e-06 Score=86.19 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~ 290 (419)
..+.+.+.+.+++.|+++++++.|++|..+ ++....|.+ +|+++.+|.||.+.+..|+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 457788888999999999999999999863 343344555 7788999999987766553
No 216
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.17 E-value=9.1e-07 Score=83.80 Aligned_cols=60 Identities=23% Similarity=0.320 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCeE--EEcCEEEeCCCCCCccc
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGET--AKCKKVVCDPSYLPNKV 292 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~~--i~ad~VV~~~~~~~~~~ 292 (419)
++.-+++=.|.++|+.+.-..+|.++..++++++.|++. .|++ |+|+.||.++++..+.+
T Consensus 225 Rmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsI 290 (680)
T KOG0042|consen 225 RMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSI 290 (680)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHH
Confidence 567777778889999999999999999876788888765 4654 67778888887765543
No 217
>PTZ00367 squalene epoxidase; Provisional
Probab=98.17 E-value=1.2e-06 Score=87.41 Aligned_cols=35 Identities=37% Similarity=0.597 Sum_probs=32.9
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
.++||||||||++|+++|..|+++|++|+|+||+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35899999999999999999999999999999975
No 218
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.16 E-value=1.4e-06 Score=87.73 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=34.6
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
..+||+|||||++||++|..|++.|++|+|+||++.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4579999999999999999999999999999999865
No 219
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.16 E-value=1.4e-06 Score=88.68 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=37.2
Q ss_pred CCCcceEEEECCCchHHHHhhcccc-CCCeEEEeccCCCC--CCccc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYY--GGESS 44 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~-~G~~V~vlE~~~~~--GG~~~ 44 (419)
|.+++||+|||||++||++|+.|++ .|.+|+|+||.+.+ .|++-
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~ 75 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD 75 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee
Confidence 4567899999999999999999999 59999999998643 34443
No 220
>PRK11445 putative oxidoreductase; Provisional
Probab=98.16 E-value=1.3e-06 Score=82.76 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=32.3
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
+||+|||||++|+++|..|+++ ++|+|+|+++.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 7999999999999999999999 999999998864
No 221
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.16 E-value=1.4e-06 Score=89.35 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=38.8
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..+|+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 46899999999999999999999999999999999999865
No 222
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.16 E-value=1.3e-06 Score=92.97 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=38.8
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..+|+|||||++||+||..|+++|++|+|+|+.+.+||..+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 46899999999999999999999999999999999999875
No 223
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.15 E-value=1.5e-06 Score=85.12 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=39.0
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
+.+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 357999999999999999999999999999999999999764
No 224
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.15 E-value=1.4e-06 Score=84.93 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=38.8
Q ss_pred cceEEEECCCchHHHHhhcccc--CCCeEEEeccCCCCCCcccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~--~G~~V~vlE~~~~~GG~~~t 45 (419)
..+|+|||||++|+.||..|++ .|++|+|+|+.+.+||..+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3689999999999999999987 79999999999999998874
No 225
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.15 E-value=1.5e-06 Score=82.73 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=34.5
Q ss_pred eEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCc
Q 014768 6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGE 42 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~ 42 (419)
||+|||||++||++|+.|+++ |++|+|+|+.+..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999999887764
No 226
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.14 E-value=1.7e-06 Score=86.89 Aligned_cols=39 Identities=28% Similarity=0.432 Sum_probs=35.7
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
.++||+|||||++||++|..|++.|++|+|+||++.++.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~ 47 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD 47 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 368999999999999999999999999999999987643
No 227
>PLN02546 glutathione reductase
Probab=98.14 E-value=1.6e-06 Score=86.54 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=36.9
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccC---------CCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN---------DYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~---------~~~GG~~~ 44 (419)
+|||+|||+|.+|..||..+++.|++|+|+|++ ..+||.|-
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~ 128 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCV 128 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCccc
Confidence 589999999999999999999999999999972 56788764
No 228
>PRK05868 hypothetical protein; Validated
Probab=98.13 E-value=1.6e-06 Score=82.74 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=32.5
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
||+|||||++||++|..|+++|++|+|+||.+.+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 8999999999999999999999999999998765
No 229
>PRK10262 thioredoxin reductase; Provisional
Probab=98.13 E-value=1.6e-06 Score=81.23 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=37.5
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
+.+||+|||||++||+||..|+++|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 5689999999999999999999999999999965 67887654
No 230
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.12 E-value=1.6e-06 Score=87.27 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=33.0
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+..+|+|||||++||++|..|+++|++|+|+||.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999999999999999999999999999975
No 231
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.12 E-value=1.7e-06 Score=92.46 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=40.0
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
.++||+|||||++||+||..|+++|++|+|+|+++.+||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3589999999999999999999999999999999999998763
No 232
>PLN02815 L-aspartate oxidase
Probab=98.12 E-value=1.8e-06 Score=86.82 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=36.2
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
++||||||+|++||+||..++++| +|+|+||.+..||.+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 589999999999999999999999 999999999988754
No 233
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.11 E-value=2.1e-06 Score=89.47 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=38.8
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..||+|||||++||+||..|++.|++|+|+|+++.+||..+
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 46999999999999999999999999999999999999875
No 234
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.11 E-value=1.9e-06 Score=83.33 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=32.7
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
-+|+|||||++||++|..|+++|++|+|+||.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 47999999999999999999999999999998754
No 235
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.11 E-value=2e-06 Score=87.73 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=44.1
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCCC
Q 014768 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS 286 (419)
Q Consensus 231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~~ 286 (419)
...+..+|.+.+.+.|++|+.+++|++|+.+ ++++.||.. +|+ .+.|+.||.+++
T Consensus 157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 3467888888888999999999999999984 889888764 453 467999886553
No 236
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.10 E-value=2.1e-06 Score=81.37 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=33.8
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
.||+|||||++|+.||+.|+++|++|+|+|+.+...-
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s 39 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT 39 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence 4899999999999999999999999999998876543
No 237
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.10 E-value=3.4e-05 Score=74.07 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=52.4
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~ 290 (419)
+.++|.+| ...++++|.+.+++ |++|+.+++|++|+.+ +++ +.|++ +|+.+.||.||.+++.+..
T Consensus 123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence 45577776 46899999999998 9999999999999983 665 45666 6667999999988887743
No 238
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.09 E-value=2.4e-06 Score=84.19 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=38.5
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..+|+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999999764
No 239
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.08 E-value=2.4e-06 Score=83.03 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=32.3
Q ss_pred eEEEECCCchHHHHhhccccCC-CeEEEeccCCCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYG 40 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~G 40 (419)
+|+|||||++||++|..|+++| .+|+|+||.+.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 7999999999999999999998 5999999987654
No 240
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.07 E-value=2.5e-06 Score=86.43 Aligned_cols=41 Identities=32% Similarity=0.439 Sum_probs=37.5
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccC-CCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~-~~~GG~~~ 44 (419)
+|||||||+|.+|..||..+++.|.+|+|+|+. +.+||.|-
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 689999999999999999999999999999984 47899764
No 241
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.06 E-value=2.6e-06 Score=84.94 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=36.1
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.+||+|||||++||+||.+|++.|++|+|+|+. +||.+.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~ 249 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL 249 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence 589999999999999999999999999999864 899875
No 242
>PLN02697 lycopene epsilon cyclase
Probab=98.05 E-value=3.4e-06 Score=83.29 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~ 289 (419)
.+.+.|.+.+.+.|+++ ++++|++|..+ ++.+..+.+ +|+++.|+.||.+.+...
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 34556666677779998 78899999873 565544444 788999999998776654
No 243
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.05 E-value=3.3e-06 Score=81.30 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=38.1
Q ss_pred cceEEEECCCchHHHHhhcc-ccCCCeEEEeccCCCCCCccccc
Q 014768 4 EYDVIVLGTGLKECILSGLL-SVDGLKVLHMDRNDYYGGESSSL 46 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~L-a~~G~~V~vlE~~~~~GG~~~t~ 46 (419)
...|+|||||++||.||.+| ++.|++|+|+||.+.+||..+.-
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 35799999999999999965 57899999999999999998753
No 244
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.05 E-value=3.2e-06 Score=80.69 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=32.5
Q ss_pred eEEEECCCchHHHHhhcc--ccCCCeEEEeccCCCC
Q 014768 6 DVIVLGTGLKECILSGLL--SVDGLKVLHMDRNDYY 39 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~L--a~~G~~V~vlE~~~~~ 39 (419)
||||||||++||++|++| ++.|.+|+|+|+++..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8899999999998876
No 245
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.04 E-value=3.2e-06 Score=86.46 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=38.7
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..+|+|||||++||++|..|++.|++|+|+|+++.+||..+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 36899999999999999999999999999999999999875
No 246
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.03 E-value=3.7e-06 Score=77.33 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=37.7
Q ss_pred CcceEEEECCCchHHHHhhcccc----C--CCeEEEeccCCCCCCccccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSV----D--GLKVLHMDRNDYYGGESSSL 46 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~----~--G~~V~vlE~~~~~GG~~~t~ 46 (419)
..+||+|||||++||+||.+|.+ + -.+|+|+||...+||.+-+-
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSG 124 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSG 124 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecc
Confidence 35899999999999999998853 2 37999999999999987653
No 247
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.03 E-value=3e-06 Score=80.76 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=34.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
.||+|||||++|+.||..|+++|++|+|+|+++..|-.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p 38 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTP 38 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCc
Confidence 37999999999999999999999999999998876553
No 248
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.02 E-value=3.8e-06 Score=82.53 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=38.3
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..+|+|||||++||++|..|++.|++|+|+|+++.+||...
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 46899999999999999999999999999999999998764
No 249
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.02 E-value=3.8e-06 Score=85.83 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=38.9
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..+|+|||||++||++|..|++.|++|+|+|+++.+||.++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 47899999999999999999999999999999999999875
No 250
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.01 E-value=4.1e-06 Score=82.27 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=38.7
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..+|+|||+|++||+||..|++.|++|+|+|+.+.+||..+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 46899999999999999999999999999999999999775
No 251
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.00 E-value=3.8e-06 Score=84.74 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~----~g--~~i~ad~VV~~~~ 286 (419)
..|.++|.+.+.+. |++++.++.|++|..+ ++++.||.. +| ..+.|+.||.+.+
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATG 193 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATG 193 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCC
Confidence 35788888777665 7999999999999984 888888753 45 3789999987653
No 252
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.00 E-value=4e-06 Score=83.51 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=36.0
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.+||+|||||++|++||.+|++.|++|+|+|. .+||.+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 48999999999999999999999999999985 5899775
No 253
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.00 E-value=4.4e-06 Score=82.45 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=36.8
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
|||+|||+|++|+++|+.|+++|++|+++|++...||..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999998754
No 254
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.97 E-value=5e-06 Score=82.57 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=39.2
Q ss_pred CCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 2 ~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..++||||||||.+||.||..++++|.+|+|+||....+|.+.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~ 46 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence 3568999999999999999999999999999999999886554
No 255
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.96 E-value=5.1e-06 Score=83.12 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=35.9
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
.++||||||+|++||+||..+++. .+|+|+||.+..||.+
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t 46 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST 46 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence 358999999999999999999886 8999999999887754
No 256
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.95 E-value=5.4e-06 Score=80.09 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=39.7
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccccc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL 46 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 46 (419)
.+|+|||||++||+||..|+++|++|+|+|+.+.+||+...-
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG 165 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG 165 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec
Confidence 589999999999999999999999999999999999998743
No 257
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.95 E-value=0.0003 Score=69.16 Aligned_cols=37 Identities=32% Similarity=0.540 Sum_probs=33.6
Q ss_pred CcceEEEECCCchHHHHhhccccC-CCeEEEeccCCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYY 39 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~~~~ 39 (419)
.+||.||||||-+|++.|.+|++. ..+|++||+...+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 569999999999999999999987 4899999997766
No 258
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.94 E-value=6e-06 Score=81.50 Aligned_cols=57 Identities=18% Similarity=0.033 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC---eEEEcCEEEeCCCCCCc
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG---ETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g---~~i~ad~VV~~~~~~~~ 290 (419)
..+.+.+.+.+++.|++|++++.+++|... ++.+ .|+. ++ +++.+|.||.+.+..|+
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~-~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAKV-KVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeE-EEEEecCCcceEEEeCEEEEEecCCcC
Confidence 346777778888999999999999999863 4443 3443 44 47999999987766553
No 259
>PRK06996 hypothetical protein; Provisional
Probab=97.93 E-value=7.5e-06 Score=79.06 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC---eEEEcCEEEeCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG---ETAKCKKVVCDPS 286 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g---~~i~ad~VV~~~~ 286 (419)
..+-+.|.+.+++.|++++++++|+++..+ ++.+ .++. ++ ++++||.||.+-+
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~-~~~v-~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQD-ADGV-TLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeec-CCeE-EEEECCCCcceEEeeeEEEECCC
Confidence 356777888888889999999999999763 4444 3444 33 6899999987644
No 260
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=7.7e-06 Score=80.43 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCC--eEEEcCEEEeCCCCCCc
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG--ETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g--~~i~ad~VV~~~~~~~~ 290 (419)
..+.+.+.+.+++.|++++++++|++|..+ ++.+ .+..+| +++.+|.||.+.+..|+
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~v-~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSY-KKQA-LFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCEE-EEEECCceEEEEeCEEEEecCCccC
Confidence 357778888888999999999999999862 4432 344444 37999999987776553
No 261
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.90 E-value=8.4e-06 Score=70.62 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.9
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
||+|||||++|+.||..|++.|.+|+++|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999988654
No 262
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.90 E-value=8.6e-06 Score=84.24 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=35.5
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
..+|+|||||++||+||++|++.|++|+|+|+.+..|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 468999999999999999999999999999998776654
No 263
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.90 E-value=7.7e-06 Score=73.08 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe--EEEcCEEE-eCCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVV-CDPSYLP 289 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~--~i~ad~VV-~~~~~~~ 289 (419)
-++-++|.+..+..||.++.+.+|.+... .+++++.|-+ ++. .++||.+| .+.++..
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffs 318 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFS 318 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeecccccc
Confidence 36789999999999999999999999999 5999999887 554 46787655 5666653
No 264
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.90 E-value=5.1e-05 Score=67.50 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=43.1
Q ss_pred cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCc----EEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768 231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK----VVGVTS-EGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 231 ~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~----v~gV~~-~g~~i~ad~VV~~~~~~~ 289 (419)
.+.+...+.+..+..|+++.+|-+|.+|... +.. -+.|.- .++++++..||.+++...
T Consensus 195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n-~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQN-KEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred hHHHHHHHHHHHHHhcccccccceeccchhc-cCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 4678888888889999999999999999852 221 122222 578899999998887653
No 265
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.90 E-value=1.2e-05 Score=58.19 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=33.7
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
+|+|||||..|+-+|..|++.|.+|+++|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 48999999999999999999999999999999987
No 266
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.89 E-value=1e-05 Score=76.75 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=38.4
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..+|+|||+|.+|+.+|..|++.|++|+++|+.+.+||...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 46899999999999999999999999999999999998764
No 267
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.89 E-value=9.7e-06 Score=80.04 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=38.2
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.+|+|||+|++|++||..|++.|++|+|+|+.+.+||.+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 6899999999999999999999999999999999999775
No 268
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.84 E-value=1.2e-05 Score=73.23 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=39.8
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.++|++|||+|++|-+||...++.|++...+|++..+||.|-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 359999999999999999999999999999999999999875
No 269
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.83 E-value=1.4e-05 Score=80.64 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCC--CcEEEEEe----CCe--EEEcCEEEeCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE--GKVVGVTS----EGE--TAKCKKVVCDPSY 287 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~--~~v~gV~~----~g~--~i~ad~VV~~~~~ 287 (419)
..+...+.+.+++.+++++.++.|+++..+++ |+++||.. +|+ .+.|+.||++++-
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG 189 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGG 189 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCc
Confidence 34555555566667789999999999998422 78999874 443 5789999876643
No 270
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.82 E-value=1.3e-05 Score=80.89 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=38.4
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..+|+|||+|++||++|..|++.|++|+|+|+++.+||..+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 36899999999999999999999999999999999999765
No 271
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.77 E-value=1.7e-05 Score=81.09 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=39.6
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS 45 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (419)
...|.|||+|++||+||..|-++|+-|+|+||.+++||....
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 368999999999999999999999999999999999998874
No 272
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.74 E-value=1.9e-05 Score=82.41 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=31.7
Q ss_pred eEEEECCCchHHHHhhccccC--CCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~ 38 (419)
+|+|||||++||++|..|++. |++|+|+||++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 799999999999999999998 899999999986
No 273
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.74 E-value=2.2e-05 Score=70.48 Aligned_cols=46 Identities=30% Similarity=0.520 Sum_probs=38.0
Q ss_pred CcceEEEECCCchHHHHhhccc----cCCCeEEEeccCCCC---------CCcccccch
Q 014768 3 EEYDVIVLGTGLKECILSGLLS----VDGLKVLHMDRNDYY---------GGESSSLNL 48 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La----~~G~~V~vlE~~~~~---------GG~~~t~~~ 48 (419)
.++||+|||||..|+++|+.|. +.|++|+|+|+++.+ ||-|..|.+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSl 143 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSL 143 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeeccc
Confidence 4689999999999999999885 457999999999864 666665554
No 274
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.73 E-value=2.2e-05 Score=77.31 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~ 290 (419)
.+.+.+.+.++++|++++++++|++|+.+ ++++. +.+ +|+++.+|.||.+.+..|+
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~-v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERT-GDGVV-VTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEE-EEECCCcEEEecEEEEeecCCcC
Confidence 46677778888999999999999999863 55443 444 7889999999987766553
No 275
>PRK13984 putative oxidoreductase; Provisional
Probab=97.73 E-value=2.4e-05 Score=79.73 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=38.4
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
..+|+|||+|++|+++|..|+++|++|+|+|+.+.+||...
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 46899999999999999999999999999999999999765
No 276
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.72 E-value=2.6e-05 Score=76.43 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~ 290 (419)
.+.+.+.+. .+.|++++++++|++|..+ ++.+ .+.+ +|+++.+|.||.+.+..|.
T Consensus 211 ~~~~~l~~~-~~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 211 DISDRFTEI-AKKKWDIRLGRNVTAVEQD-GDGV-TLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HHHHHHHHH-HhcCCEEEeCCEEEEEEEc-CCeE-EEEEcCCCEEEcCEEEEeeccCcC
Confidence 345555443 3468999999999999873 5544 3444 7788999999988776553
No 277
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.70 E-value=2.6e-05 Score=82.73 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=33.5
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
++||+|||||.+||+||..++++|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 58999999999999999999999999999999886
No 278
>PRK07846 mycothione reductase; Reviewed
Probab=97.69 E-value=3.2e-05 Score=75.74 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~ 289 (419)
.+.+.+.+. .+.|++++++++|++|..+ ++++ .+.+ +|+++.+|.||.+.+..|
T Consensus 208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 208 DISERFTEL-ASKRWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred HHHHHHHHH-HhcCeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCcc
Confidence 344445443 4568999999999999863 5443 3454 788999999998776654
No 279
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.67 E-value=2.6e-05 Score=65.31 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=37.2
Q ss_pred cceEEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~~ 44 (419)
+.||||||+|-+||+||+..+++ ..+|.++|+.-.+||.++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 36999999999999999999955 489999999999999887
No 280
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.66 E-value=0.00059 Score=71.70 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~ 290 (419)
.+.+.+.+.++++|+++++++.|++|..+..+....|.+ +|+++.+|.||.+++..|+
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ 246 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence 345667788889999999999999997522244556666 8999999999998877664
No 281
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.65 E-value=3.5e-05 Score=76.41 Aligned_cols=39 Identities=31% Similarity=0.345 Sum_probs=34.8
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
|||||||||++|+.||..+++.|.+|+|+|++...+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 699999999999999999999999999999986554443
No 282
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.58 E-value=3.9e-05 Score=67.43 Aligned_cols=42 Identities=17% Similarity=0.353 Sum_probs=38.2
Q ss_pred CcceEEEECCCchHHHHhhccccCC------CeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G------~~V~vlE~~~~~GG~~~ 44 (419)
...+|+|||||+.|.++|++|++++ ..|+++|+....||...
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 4578999999999999999999988 89999999999888765
No 283
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.48 E-value=0.00029 Score=66.26 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=55.6
Q ss_pred eEEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCCc
Q 014768 223 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 223 ~~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~~ 290 (419)
+++.|.+| ...++.+|.+.+.++|++++.+++|++|.. +++++++|.++++++.||.||.+++.+..
T Consensus 125 g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 125 AVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSGDVQADQVVLAAGAWAG 194 (337)
T ss_pred EEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCCEEECCEEEEcCChhhh
Confidence 34455555 478999999999999999999999999998 47888888885558999999988877643
No 284
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.40 E-value=0.00016 Score=68.61 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=46.2
Q ss_pred EEEecCCcC-cHHHHHHHHHHH-cCcEEEcCCccceEEEcCCC-cEEEEEe--C-C--eEEEcCEEEeCC
Q 014768 224 YIYPLYGLG-ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEG-KVVGVTS--E-G--ETAKCKKVVCDP 285 (419)
Q Consensus 224 ~~~p~gG~~-~l~~al~~~~~~-~G~~i~~~~~V~~I~~~~~~-~v~gV~~--~-g--~~i~ad~VV~~~ 285 (419)
.++..+.++ .|..+|.+.+++ .+.+++.++.+.+|..+ ++ .+.||.+ . + .++.|+.||.++
T Consensus 124 IlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~~~~~~~~~~a~~vVLAT 192 (518)
T COG0029 124 ILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE-DGIGVAGVLVLNRNGELGTFRAKAVVLAT 192 (518)
T ss_pred EEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc-CCceEeEEEEecCCCeEEEEecCeEEEec
Confidence 345556544 588899888876 58999999999999994 77 4558887 2 2 578899988654
No 285
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.00012 Score=70.25 Aligned_cols=42 Identities=36% Similarity=0.336 Sum_probs=35.7
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
|++.|||||||||.+|+-||...|+-|.+++++=-+-.-=|.
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~ 42 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGE 42 (621)
T ss_pred CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceee
Confidence 567799999999999999999999999999998776443333
No 286
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.26 E-value=0.00021 Score=68.90 Aligned_cols=55 Identities=22% Similarity=0.163 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~ 290 (419)
.+.+.+.+.++++|++++++++|++|.. ++.+ .+.+ +|+++.||.||.+.+..|+
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~-~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKV-ELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEE-EEEECCCCEEECCEEEECCCCChh
Confidence 4556677788889999999999999874 3333 4555 8889999999988877653
No 287
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.18 E-value=0.00025 Score=69.61 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=45.5
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~~ 289 (419)
..+.+.+.+.+++.|++++++++|++|.. ++++..+.++++++.||.||.+++..|
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~i~~d~vi~a~G~~p 246 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGEYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCEEEcCEEEECcCCCc
Confidence 45777888888999999999999999963 555666777777899999998887665
No 288
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.14 E-value=0.00033 Score=68.51 Aligned_cols=51 Identities=16% Similarity=0.106 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~ 289 (419)
.+.+.+.+.+++.|++++++++|++|.. . .|.+ +|+++.+|.||.+.+..|
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCCCc
Confidence 5677788888999999999999999852 2 2444 678899999998877665
No 289
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.00049 Score=63.05 Aligned_cols=43 Identities=14% Similarity=-0.021 Sum_probs=38.3
Q ss_pred cceEEEECCCchHHHHhhcccc--CCCeEEEeccCCCCCCccccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSSL 46 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~--~G~~V~vlE~~~~~GG~~~t~ 46 (419)
...|.|||+|++|+-+|..|-+ .+.+|.|+|+.+.|+|..+.-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 4589999999999999998876 469999999999999998854
No 290
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.05 E-value=0.00058 Score=66.46 Aligned_cols=51 Identities=20% Similarity=0.046 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~ 289 (419)
.+.+.+.+.++++|++++++++|++|.. + .|.+ +|+++.||.||.+++..|
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCC
Confidence 4677778889999999999999998863 2 2445 788999999998876544
No 291
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.03 E-value=0.00057 Score=61.88 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=39.6
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
++||..|||||-+|+.+|.+.++.|.+|.|+|..-.+||.|-
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV 60 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence 469999999999999999999999999999999889999875
No 292
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.00052 Score=61.67 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=35.4
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
...|.|||||++|.-||+.+|++|..|.++|-++.-+--+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa 42 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA 42 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence 4579999999999999999999999999999987765444
No 293
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00054 Score=61.77 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=31.2
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
+||.||||||-+||+||.+.+..|.+|.++|--
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 589999999999999999999999999999963
No 294
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.93 E-value=0.00061 Score=66.02 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=38.4
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.+++|||+|..||.+|..|+++|++|+++|+++++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 5899999999999999999999999999999999999875
No 295
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.60 E-value=0.0063 Score=60.91 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=53.2
Q ss_pred EEEecCC---cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEeCCCCCCcc
Q 014768 224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPNK 291 (419)
Q Consensus 224 ~~~p~gG---~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g--~~i~ad~VV~~~~~~~~~ 291 (419)
+++| .| ...++.++++.+.++|++|+++++|++|+. +++++++|++ +| .++.|+.||.+++.|...
T Consensus 118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~ 192 (516)
T TIGR03377 118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIR-EGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR 192 (516)
T ss_pred EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence 4455 34 357899999999999999999999999998 4888887765 34 379999999999888543
No 296
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.59 E-value=0.002 Score=61.39 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~ 289 (419)
.+.+.+.+.++++|++++++++|++|.. + .|.+ +|+++.+|.||.+++..|
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCCCh
Confidence 4667777888999999999999998852 2 3455 788999999998887654
No 297
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.52 E-value=0.002 Score=54.74 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=27.6
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+|.|||.|..||.+|..||++|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 799999999999999999999999999999864
No 298
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.51 E-value=0.0019 Score=53.40 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=30.5
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+|.|||||-.|.++|..|+++|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999976
No 299
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.49 E-value=0.0018 Score=54.80 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=28.8
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+|.|||+|..|...|..++.+|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999999654
No 300
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.47 E-value=0.0028 Score=60.16 Aligned_cols=52 Identities=27% Similarity=0.302 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCe-EEEcCEEEeCCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPSYLP 289 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~-~i~ad~VV~~~~~~~ 289 (419)
.++.+...+.++++|++|++++.|++|.-+ +|++ +|+ +|.|+.||-+++..+
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCC------cEEEccCCeeEecCEEEEcCCCcC
Confidence 467777788899999999999999999742 4555 566 599999998887654
No 301
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.44 E-value=0.0025 Score=61.08 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~ 290 (419)
.+.+.+.+.+++.|++++++++|++|..+ ++. ..|.+ +|+++.||.||.+.+..|.
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcCCcEEECCEEEECcCCCcc
Confidence 45667778888999999999999999863 443 34555 8889999999998877653
No 302
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.0025 Score=60.29 Aligned_cols=34 Identities=29% Similarity=0.526 Sum_probs=30.7
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
..|||||||||.+|+-||+..|+-|.+.+++-.+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 4689999999999999999999999988888765
No 303
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.36 E-value=0.0033 Score=58.43 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=30.8
Q ss_pred cceEEEECCCchHHHHhhccccCC----CeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G----~~V~vlE~~~~ 38 (419)
.+||+|||||+.|++.|+.|...- ++|+++|..+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 689999999999999999998643 69999999744
No 304
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.13 E-value=0.0043 Score=59.89 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=35.6
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
.+++|||+|..|+-+|..|++.|.+|+|+|+.+.+.++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence 479999999999999999999999999999999886654
No 305
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.08 E-value=0.0049 Score=56.42 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=33.9
Q ss_pred CCCc-ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 1 MDEE-YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 1 m~~~-~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
|+.. .+|.|||+|..|...|..|+++|++|+++|.++..
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 4444 47999999999999999999999999999998653
No 306
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.03 E-value=0.0052 Score=56.58 Aligned_cols=38 Identities=24% Similarity=0.196 Sum_probs=34.2
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
|++..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 56667899999999999999999999999999998753
No 307
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=0.006 Score=58.25 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=33.8
Q ss_pred ceEEEECCCchHHHHhhccccC--C-CeEEEeccCCCCCCccc
Q 014768 5 YDVIVLGTGLKECILSGLLSVD--G-LKVLHMDRNDYYGGESS 44 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~--G-~~V~vlE~~~~~GG~~~ 44 (419)
++|+|||+|.+|++.|.+|.+. . ..|.|+|+.+..|+-..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 6899999999999999999753 2 23999999999987654
No 308
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.89 E-value=0.0063 Score=59.98 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=32.1
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
+|.|||.|.+|+++|..|+++|++|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999998775
No 309
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.83 E-value=0.0075 Score=59.82 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.6
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+|+|||+|.+|+.+|..|+++|++|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4799999999999999999999999999998764
No 310
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.82 E-value=0.0041 Score=54.28 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=42.2
Q ss_pred EEEECCCchHHHHhhccccC--CCeEEEeccCCCCCCcccccchHHHHHhhcCCC
Q 014768 7 VIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE 59 (419)
Q Consensus 7 vvIIGaGi~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~ 59 (419)
.+||||||+|.+||-.|++. ..+|+++-+.+.+-.-.+....+.+.+.|....
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~e 56 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKE 56 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccc
Confidence 68999999999999999853 469999999888766666666666667776554
No 311
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.75 E-value=0.007 Score=56.20 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=31.2
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+|.|||+|..|.+.|..|+++|++|+++|+++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999864
No 312
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.71 E-value=0.0095 Score=58.33 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=34.7
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
.+|+|||+|..|+.+|..|++.|.+|+++|+.+.+.++
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 47999999999999999999999999999999887544
No 313
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0052 Score=55.85 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=32.3
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.|||+|||+|++|.+||.+.||+|.+.=++ .++.||..-
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvl 249 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVL 249 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeec
Confidence 499999999999999999999999876554 245788653
No 314
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.66 E-value=0.01 Score=56.90 Aligned_cols=37 Identities=27% Similarity=0.212 Sum_probs=33.9
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~ 178 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA 178 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc
Confidence 4799999999999999999999999999999887653
No 315
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.64 E-value=0.0092 Score=59.04 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=33.4
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
.+++|||||..|+-+|..|++.|.+|+++|+++.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il 216 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL 216 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC
Confidence 479999999999999999999999999999988764
No 316
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.57 E-value=0.04 Score=52.20 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=47.1
Q ss_pred CeEEEecCC-cCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCeEEEcCEEEeCCC
Q 014768 222 SPYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDPS 286 (419)
Q Consensus 222 ~~~~~p~gG-~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~--~g~~i~ad~VV~~~~ 286 (419)
.+.+||.-. ...++++|.+.+++.|++|+++++|++| . +++ ..+.+ +++.++||+||.+++
T Consensus 75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~--~~~-~~v~~~~~~~~~~a~~vIlAtG 138 (376)
T TIGR03862 75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q--GGT-LRFETPDGQSTIEADAVVLALG 138 (376)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e--CCc-EEEEECCCceEEecCEEEEcCC
Confidence 345688544 7789999999999999999999999999 2 333 45665 335799999886553
No 317
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=95.54 E-value=0.057 Score=51.07 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=64.5
Q ss_pred CcccHHHHHHHcCCChhHH-HHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHhhhccC-CCeEEEecCCcCcHHHHHHH
Q 014768 163 TRVTTRELIAKYGLDDNTI-DFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-GSPYIYPLYGLGELPQAFAR 240 (419)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~p~gG~~~l~~al~~ 240 (419)
...+..+++++.++++.+. +++...... +|.+..-..++ ... ....| ..+.+.++||..+|++.|.+
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRv----NYgQ~~~i~a~---~G~----vSla~a~~gl~sV~GGN~qI~~~ll~ 136 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRV----NYGQNVNIHAF---AGL----VSLAGATGGLWSVEGGNWQIFEGLLE 136 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEe----ecccccchhhh---hhh----eeeeeccCCceEecCCHHHHHHHHHH
Confidence 4566778888888887764 343322222 22221111221 111 11113 45678999999999999998
Q ss_pred HHHHcCcEEEcCCccceE-EEcCCCc-EEEEEe---CC-eEEEcCEEEeCCCC
Q 014768 241 LSAVYGGTYMLNKPECKV-EFDEEGK-VVGVTS---EG-ETAKCKKVVCDPSY 287 (419)
Q Consensus 241 ~~~~~G~~i~~~~~V~~I-~~~~~~~-v~gV~~---~g-~~i~ad~VV~~~~~ 287 (419)
.. |+++ ++++|++| ....++. ...|.. .+ ..-..|.||.++.+
T Consensus 137 ~S---~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl 185 (368)
T PF07156_consen 137 AS---GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPL 185 (368)
T ss_pred Hc---cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCc
Confidence 76 8899 99999999 3322332 223333 22 23346999987754
No 318
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.51 E-value=0.012 Score=48.27 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=29.0
Q ss_pred EEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 7 vvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
|+|+|+|-.|+..|++|+++|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999853
No 319
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.50 E-value=0.013 Score=54.36 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=31.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..|.|||+|..|...|..++.+|++|+++|.++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998763
No 320
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.44 E-value=0.012 Score=51.87 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=31.4
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+++|||+|-.|.+.|..|++.|++|+++|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 799999999999999999999999999999765
No 321
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.44 E-value=0.012 Score=58.04 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=34.1
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
.+++|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 4799999999999999999999999999999987653
No 322
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.40 E-value=0.015 Score=54.12 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=31.5
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
..+|.|||+|..|...|..|+++|++|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3689999999999999999999999999999864
No 323
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.38 E-value=0.014 Score=53.65 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=31.3
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998753
No 324
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.012 Score=54.14 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=31.0
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 699999999999999999999999999999754
No 325
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.31 E-value=0.0072 Score=56.78 Aligned_cols=36 Identities=36% Similarity=0.567 Sum_probs=27.6
Q ss_pred cceEEEECCCchHHHHhhccccCC-CeEEEeccCCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY 39 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~ 39 (419)
.+|+|+||.|+++|+.|+.|...+ .+++.|||.+..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 589999999999999999999877 999999997753
No 326
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.31 E-value=0.013 Score=54.68 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=30.5
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
++.|||+|-.||+.|..||+.|++|+.+|..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 68999999999999999999999999999865
No 327
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.28 E-value=0.014 Score=57.59 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=33.9
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
.+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP 203 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC
Confidence 4799999999999999999999999999999887653
No 328
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.28 E-value=0.015 Score=56.35 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=33.0
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
|. ..+|.|||.|..|+..|..|+++|++|+++|.++.
T Consensus 1 m~-~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 1 MS-FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CC-ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 44 45899999999999999999999999999998654
No 329
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.27 E-value=0.016 Score=53.95 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=33.3
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
|..-.+|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 5555689999999999999999999999999999865
No 330
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.01 Score=50.53 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=36.2
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEecc---CC-CCCCcccccc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDR---ND-YYGGESSSLN 47 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~---~~-~~GG~~~t~~ 47 (419)
-+|+|||+|+++-.||.+++++-.+-+++|- ++ -+||...|.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 4899999999999999999999999999995 33 3588776543
No 331
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.26 E-value=0.015 Score=57.47 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=34.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
-+++|||+|..|+-.|..|++.|.+|+++|+.+.+...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence 47999999999999999999999999999999876543
No 332
>PRK06370 mercuric reductase; Validated
Probab=95.21 E-value=0.017 Score=56.93 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=34.8
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 47999999999999999999999999999999887654
No 333
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.19 E-value=0.016 Score=56.91 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=34.0
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
-+++|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 4799999999999999999999999999999987753
No 334
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.019 Score=56.51 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=32.0
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
...|+|||+|..|+.+|..|+++|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999975
No 335
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.18 E-value=0.017 Score=53.20 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=33.9
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
|+.-.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 55556799999999999999999999999999998753
No 336
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.16 E-value=0.017 Score=56.10 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=34.3
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
-.++|||||..|+-.|..+++-|.+|+|+|+.+++--
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 3699999999999999999999999999999998754
No 337
>PRK04148 hypothetical protein; Provisional
Probab=95.16 E-value=0.015 Score=46.01 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=30.3
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.++++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 998889999999999999999877
No 338
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.15 E-value=0.018 Score=56.90 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=33.9
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
-+++|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 4799999999999999999999999999999887644
No 339
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.13 E-value=0.017 Score=56.89 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=33.6
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
-+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 4799999999999999999999999999999887643
No 340
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.12 E-value=0.018 Score=56.86 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=33.9
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
.+++|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 209 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP 209 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC
Confidence 4799999999999999999999999999999887643
No 341
>PRK07846 mycothione reductase; Reviewed
Probab=95.11 E-value=0.018 Score=56.48 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=33.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
.+++|||||..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 479999999999999999999999999999988764
No 342
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.06 E-value=0.019 Score=56.23 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=34.0
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
-+++|||||..|+-.|..|++.|.+|+++|+.+.+..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 4799999999999999999999999999999887654
No 343
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.99 E-value=0.02 Score=56.52 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=33.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
-+++|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~ 209 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP 209 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 4799999999999999999999999999999876643
No 344
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.97 E-value=0.021 Score=55.76 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=33.2
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~ 173 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL 173 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence 479999999999999999999999999999988763
No 345
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.91 E-value=0.025 Score=55.83 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=34.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
.+++|||+|..|+-+|..|++.|.+|+++|+.+.+...
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 47999999999999999999999999999999877543
No 346
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.87 E-value=0.027 Score=52.84 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=33.1
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
|....+|.|||+|..|...|..|+++|++|++++++.
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4445689999999999999999999999999999954
No 347
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=94.84 E-value=0.022 Score=50.81 Aligned_cols=36 Identities=14% Similarity=-0.007 Sum_probs=28.8
Q ss_pred CcceEEEECCCchHHHHhhccccCC-------CeEEEeccCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRNDY 38 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G-------~~V~vlE~~~~ 38 (419)
+..+++|||+|+.||++|..+.+.+ .+|+|++-...
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 3569999999999999998777643 58888876544
No 348
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.83 E-value=0.025 Score=55.80 Aligned_cols=37 Identities=30% Similarity=0.291 Sum_probs=34.3
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
.+++|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 4799999999999999999999999999999988764
No 349
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.80 E-value=0.07 Score=45.99 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 287 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~ 287 (419)
..+.+-|.+.++++|.+++++++|++|..+ +++ +.|++ +++++.||+||.+.+.
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDG-WTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTT-EEEEETTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccE-EEEEEEecceeeeeeEEEeeec
Confidence 446667778888889999999999999985 665 56777 6679999999987765
No 350
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.78 E-value=0.022 Score=52.48 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=31.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 351
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.78 E-value=0.023 Score=53.66 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=29.8
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
+|.|||+|..|...|..|+++|++|++++++
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 6999999999999999999999999999985
No 352
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=94.74 E-value=0.026 Score=55.85 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=34.0
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
-+|+|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 220 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA 220 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence 4799999999999999999999999999999887644
No 353
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.66 E-value=0.027 Score=52.19 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=29.9
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+|.|||+|-.|...|..|+++|++|+++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999999853
No 354
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.66 E-value=0.028 Score=52.09 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=31.2
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
.++|.|||+|-.|...|++|+++|.+|+++.+..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3579999999999999999999999999999963
No 355
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.61 E-value=0.027 Score=51.62 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=31.2
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3799999999999999999999999999997654
No 356
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.60 E-value=0.04 Score=45.91 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=29.8
Q ss_pred cceEEEECCCc-hHHHHhhccccCCCeEEEeccC
Q 014768 4 EYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 4 ~~dvvIIGaGi-~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
..+|+|||+|- .|..+|.+|.+.|.+|+++.++
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 46899999995 7999999999999999999986
No 357
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.58 E-value=0.029 Score=55.16 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=33.8
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
.+++|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 4799999999999999999999999999999887643
No 358
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.51 E-value=0.13 Score=46.21 Aligned_cols=57 Identities=21% Similarity=0.109 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC------------CeEEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE------------GETAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~------------g~~i~ad~VV~~~~~~ 288 (419)
..+...|.+.+++.|++++++++|.++..++++++.+|..+ ..+++|+.||.+++..
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 56888899999999999999999999987434478877642 2479999999776543
No 359
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.51 E-value=0.03 Score=47.82 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=33.2
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
....|.|||||..|.-.|-..+..|+.|.+++++...
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 4467999999999999999999999999999998653
No 360
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.46 E-value=0.034 Score=55.24 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=32.6
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
|..-.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 1 ~~~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 1 MTMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CCCcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3334579999999999999999999999999999864
No 361
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.46 E-value=0.038 Score=54.57 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=34.9
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCcc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES 43 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (419)
.+++|||+|..|+-.|..|++.|.+|+++|+.+.+....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~ 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence 379999999999999999999999999999988776543
No 362
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.44 E-value=0.031 Score=58.78 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=33.8
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
.+++|||||..|+-+|..|++.|.+|+|+|+.+.+-.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~ 177 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA 177 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence 4799999999999999999999999999999887643
No 363
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.37 E-value=0.036 Score=55.48 Aligned_cols=36 Identities=22% Similarity=0.035 Sum_probs=33.0
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
.+|+|||||..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~ 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence 489999999999999999999999999999887663
No 364
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.36 E-value=0.028 Score=50.52 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=37.0
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccC--------CCCCCccccc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN--------DYYGGESSSL 46 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~--------~~~GG~~~t~ 46 (419)
.-+|+|||+|..|.-+|..+..-|.+|+++|.| +..||+..+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~ 218 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTL 218 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEE
Confidence 358999999999999999999999999999998 4577775543
No 365
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.29 E-value=0.034 Score=51.51 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=28.9
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEecc
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR 35 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~ 35 (419)
+|.|||+|..|...|..|+++|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999987
No 366
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.28 E-value=0.035 Score=53.85 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=31.0
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+|.|||.|..|+..|..|+++|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998764
No 367
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.23 E-value=0.038 Score=56.50 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=34.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
-+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~ 350 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL 350 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence 36999999999999999999999999999999887643
No 368
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.22 E-value=0.039 Score=54.13 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=33.0
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
.+++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 202 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL 202 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 469999999999999999999999999999988763
No 369
>PTZ00058 glutathione reductase; Provisional
Probab=94.18 E-value=0.038 Score=55.57 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=33.6
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
.+|+|||+|..|+-.|..|++.|.+|+++|+++.+.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 479999999999999999999999999999988765
No 370
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.11 E-value=0.041 Score=51.52 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=30.3
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+|.|||+|..|...|..|+++|++|+++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 371
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.11 E-value=0.04 Score=58.18 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=33.6
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
.+++|||+|+.|+-+|..|++.|.+|+|+|+.+.+-.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~ 182 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA 182 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence 4699999999999999999999999999999887543
No 372
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.11 E-value=0.049 Score=50.32 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=30.3
Q ss_pred ceEEEECCCchHHHHhhccccCCC-eEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~ 38 (419)
.+|.|||+|..|+.+|+.|+..|+ +|+++|.+..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 479999999999999999999886 8999999443
No 373
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.07 E-value=0.046 Score=50.65 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.3
Q ss_pred eEEEECCCchHHHHhhccccCC--CeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~ 38 (419)
+|.|||+|..|.++|+.|+++| .+|.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 6999999999999999999999 58999999754
No 374
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.04 E-value=0.05 Score=45.51 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=29.8
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
...|+|+|+|..|..||..|...|.+|+++|.+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3689999999999999999999999999999854
No 375
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.94 E-value=0.051 Score=41.27 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=31.0
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
...|+|||+|-.|..-+..|.+.|.+|+|+-...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4689999999999999999999999999999874
No 376
>PLN02507 glutathione reductase
Probab=93.93 E-value=0.048 Score=54.28 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=33.0
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
.+++|||+|..|+-.|..|++.|.+|+++++.+.+-
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 479999999999999999999999999999988653
No 377
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.81 E-value=0.056 Score=52.98 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=33.6
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
-+++|||+|..|+-.|..|++.|.+|+++|+++.+..
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 195 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 3799999999999999999999999999999877643
No 378
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.81 E-value=0.054 Score=54.74 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=32.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
.+|+|||||..|+-.|..|++.|.+|+++++.+..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 47999999999999999999999999999998864
No 379
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.79 E-value=0.06 Score=49.96 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=32.5
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+..+|.|||+|..|...|..|+++|++|+++.++..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 345899999999999999999999999999999753
No 380
>PRK10262 thioredoxin reductase; Provisional
Probab=93.77 E-value=0.058 Score=50.38 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=32.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 47999999999999999999999999999998765
No 381
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.72 E-value=0.18 Score=50.99 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=44.8
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDP 285 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~ 285 (419)
..|.++|.+.+++.|++|+.++.|++++.+ +|+|+||.. +|+ .+.|+.||+++
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILAT 177 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLAT 177 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECC
Confidence 468999999999999999999999999984 899999864 353 57899988755
No 382
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.61 E-value=0.057 Score=53.01 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=31.7
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999999765
No 383
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.61 E-value=0.06 Score=53.94 Aligned_cols=35 Identities=17% Similarity=-0.041 Sum_probs=32.7
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
.+|+|||||..|+-+|..|+..|.+|+++++.+.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 47999999999999999999999999999998765
No 384
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.54 E-value=0.079 Score=49.31 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=34.0
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCC-eEEEeccCCCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYY 39 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~~ 39 (419)
|-+..+|+|||+|..|...|..|+..|+ +|.++|.++..
T Consensus 3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 4455789999999999999999999995 99999997764
No 385
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.50 E-value=0.085 Score=45.63 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=31.4
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
...|+|||||-.|...+..|.+.|.+|+|+.....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 35799999999999999999999999999987543
No 386
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=93.43 E-value=0.2 Score=47.97 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP 289 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~ 289 (419)
..+.+.+....++.|+++++++.+.+++-.++|+++-|.+ +|.++.||.||+..+..|
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 4577778889999999999999999999766789999998 999999999987655443
No 387
>PLN02546 glutathione reductase
Probab=93.42 E-value=0.066 Score=53.88 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=33.8
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG 41 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (419)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 4799999999999999999999999999999887654
No 388
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.41 E-value=0.057 Score=53.54 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=31.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998754
No 389
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.39 E-value=0.085 Score=45.55 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=30.2
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
...|+|||||-.|...|..|.++|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 468999999999999999999999999999864
No 390
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.36 E-value=0.092 Score=49.21 Aligned_cols=39 Identities=33% Similarity=0.477 Sum_probs=34.9
Q ss_pred CCCcceEEEECCCchHHHHhhccccCC-CeEEEeccCCCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY 39 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~ 39 (419)
|++.+|+|.||-|+.-|+.|+.|...+ ++++.|||.+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 567799999999999999999999876 889999998863
No 391
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.35 E-value=0.059 Score=51.57 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=28.9
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+|.|||.|..|+..|..|+. |++|+++|.++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 59999999999999988885 999999998764
No 392
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.35 E-value=0.068 Score=53.10 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=31.7
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999998765
No 393
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.34 E-value=0.084 Score=42.33 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=30.0
Q ss_pred cceEEEECCCchHHHHhhccccCCCe-EEEeccC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRN 36 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~ 36 (419)
...++|||+|=+|-.++..|++.|.+ |+|+-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46899999999999999999999976 9999885
No 394
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.34 E-value=0.079 Score=45.65 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=30.6
Q ss_pred cceEEEECCCchHHHHhhccccCCC-eEEEeccC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~ 36 (419)
..+|+|||+|-.|..+|..|++.|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999998 69999986
No 395
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.33 E-value=0.069 Score=52.40 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=29.5
Q ss_pred eEEEECCCchHHHHhhccccCC--CeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~ 38 (419)
+|.|||+|..|+.+|..||++| ++|+.+|.+..
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 6999999999999999999884 88999997653
No 396
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.31 E-value=0.25 Score=50.12 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=44.8
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEeCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDP 285 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~----~g~--~i~ad~VV~~~ 285 (419)
..|..+|.+.+.+.|++++.++.+++++.+++|+|+||.. +|+ .+.|+.||+++
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLAT 185 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLAT 185 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECC
Confidence 4689999998888999999999999999844789999875 454 57899988655
No 397
>PRK13748 putative mercuric reductase; Provisional
Probab=93.31 E-value=0.075 Score=53.89 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=31.2
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+++|||+|..|+-.|..|++.|.+|+++++.+.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 304 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL 304 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 4799999999999999999999999999998643
No 398
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.26 E-value=0.059 Score=49.25 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=29.9
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+|.|||.|..|.+.|..|+++|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 399
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.18 E-value=0.065 Score=48.42 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=38.2
Q ss_pred CCcCcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC--C--eEEEcCEEEeCC
Q 014768 229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE--G--ETAKCKKVVCDP 285 (419)
Q Consensus 229 gG~~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~--g--~~i~ad~VV~~~ 285 (419)
-|....+++|.+.+++...++.+.....++..+ +.+++=--++ | ++++.+-+-+++
T Consensus 233 FgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~-~~~AvFe~L~kPG~t~ei~yslLHv~P 292 (446)
T KOG3851|consen 233 FGVKHYADALEKVIQERNITVNYKRNLIEVRTN-DRKAVFENLDKPGVTEEIEYSLLHVTP 292 (446)
T ss_pred ecHHHHHHHHHHHHHhcceEeeeccceEEEecc-chhhHHHhcCCCCceeEEeeeeeeccC
Confidence 466788999999999999999999998888863 4433211122 3 356666554444
No 400
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.17 E-value=0.077 Score=49.71 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=30.0
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+|.|||+|--|.+.|..|+++|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999854
No 401
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.13 E-value=0.071 Score=50.54 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=30.6
Q ss_pred ceEEEECCCchHHHHhhccccCCCe-EEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~~ 38 (419)
..|+|||+|..|+-+|..|++.|.+ |+|+++.+.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 4799999999999999999999986 999998654
No 402
>PRK12831 putative oxidoreductase; Provisional
Probab=93.11 E-value=0.076 Score=52.33 Aligned_cols=34 Identities=21% Similarity=0.049 Sum_probs=31.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
-+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999998764
No 403
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.09 E-value=0.11 Score=42.88 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=28.8
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEec
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMD 34 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE 34 (419)
...|+|||||-.|..-|..|.+.|.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4679999999999999999999999999995
No 404
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.07 E-value=0.085 Score=50.90 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=33.5
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
..+|+|+|-|.+|++||..|.+.|.+|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 357999999999999999999999999999988776
No 405
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.05 E-value=0.075 Score=50.57 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=31.2
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
..+|+|||+|..|+.+|..|.+.|.+|++++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3579999999999999999999999999999864
No 406
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.96 E-value=0.09 Score=48.37 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=32.2
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 47999999999999999999999999999997654
No 407
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=92.94 E-value=0.4 Score=43.06 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCC--cEEEEEeC------------CeEEEcCEEEeCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG--KVVGVTSE------------GETAKCKKVVCDPSY 287 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~--~v~gV~~~------------g~~i~ad~VV~~~~~ 287 (419)
..+.+.|.+.+.+.|++++.++.|.++..+ ++ ++.||.++ ..+++|+.||.+.+.
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~-~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITR-DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 467888888999999999999999999984 55 68888752 247899999977653
No 408
>PTZ00052 thioredoxin reductase; Provisional
Probab=92.91 E-value=0.093 Score=52.26 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=30.0
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
-+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 37999999999999999999999999999974
No 409
>PRK14727 putative mercuric reductase; Provisional
Probab=92.88 E-value=0.1 Score=51.80 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=30.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
-+++|||+|..|+-.|..|++.|.+|+++++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 479999999999999999999999999999753
No 410
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.85 E-value=0.075 Score=55.21 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=31.4
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..|.|||||..|...|..++.+|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999999754
No 411
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.84 E-value=0.091 Score=51.77 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=31.3
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+|.|+|.|.+|+++|..|.+.|++|++.|+++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 3799999999999999999999999999998763
No 412
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.76 E-value=0.11 Score=43.28 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=28.4
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+|.|||-|..|...|..|.++|++|.++++++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 79999999999999999999999999999864
No 413
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=92.76 E-value=0.091 Score=52.09 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=29.9
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
-+++|||||..|+-+|..|++.|.+|+++++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 36999999999999999999999999999974
No 414
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.74 E-value=0.1 Score=49.34 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=30.0
Q ss_pred eEEEECCCchHHHHhhccccCC-CeEEEeccC
Q 014768 6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRN 36 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~ 36 (419)
+|+|||+|-.|.++|..|+++| .+|++.+|+
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 7999999999999999999999 999999997
No 415
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=92.73 E-value=0.32 Score=44.45 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEE-EeCCeEEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV-~~~g~~i~ad~VV~~~~~~ 288 (419)
..+-+.|.+.+++.|++++++++|+++..+ ++++... +.++.+++||.||.+.+..
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 357778888888899999999999999874 5554322 2255789999998776553
No 416
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.66 E-value=0.11 Score=47.48 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=30.5
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
..|.|||||..|-..|..+|..|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 57999999999999999999988999999998
No 417
>PRK06116 glutathione reductase; Validated
Probab=92.65 E-value=0.4 Score=47.17 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~ 290 (419)
.+.+.+.+.+++.|++++++++|++|..++++.+ .+.+ +|+++.||.||.+.+..|.
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcC
Confidence 5777888888999999999999999986323333 3555 7889999999988766553
No 418
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.63 E-value=0.084 Score=54.77 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=31.4
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..|.|||||..|...|..++.+|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998754
No 419
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.44 E-value=0.3 Score=34.92 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC
Q 014768 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG 273 (419)
Q Consensus 232 ~~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g 273 (419)
..+.+.+.+.+++.|+++++++.|++|..+ ++++. |++ ||
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~~~-V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKD-GDGVE-VTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTSEE-EEEETS
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEEE-EEEecC
Confidence 356777888899999999999999999985 44466 776 54
No 420
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.34 E-value=0.1 Score=40.38 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=28.7
Q ss_pred EEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 7 vvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
|+|+|.|-.|...|..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 69999999999999999998889999999764
No 421
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.32 E-value=0.12 Score=45.23 Aligned_cols=32 Identities=31% Similarity=0.286 Sum_probs=29.2
Q ss_pred eEEEEC-CCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIG-aGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+|.||| +|..|.+.|..|+++|++|+++.+++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 79999999999999999999998764
No 422
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.24 E-value=0.47 Score=46.56 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=31.9
Q ss_pred eEEEECCCchHHHHhhccccCC--CeEEEeccCCCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYG 40 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~~G 40 (419)
+|||||||++|+++|..|++.| .+|+|+|+++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 7999999999999999999876 5999999999864
No 423
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.01 E-value=0.14 Score=49.18 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=31.7
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
...|+|+|+|..|+.+|..|...|.+|+++|.++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 35799999999999999999999999999998753
No 424
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.95 E-value=0.12 Score=51.01 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=31.0
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
.-+|+|+|+|..||.|+..+...|.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3589999999999999999999999999999865
No 425
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.92 E-value=0.14 Score=50.57 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=31.6
Q ss_pred cceEEEECCCchHHH-HhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~-aA~~La~~G~~V~vlE~~~~ 38 (419)
..+|.|||.|-+|++ +|..|.+.|++|++.|.++.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 357999999999999 59999999999999998765
No 426
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.81 E-value=0.14 Score=50.49 Aligned_cols=34 Identities=12% Similarity=-0.152 Sum_probs=31.4
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 4799999999999999999999999999997654
No 427
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.80 E-value=0.12 Score=53.85 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.4
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..|.|||+|..|...|..++.+|++|+++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 4699999999999999999999999999998764
No 428
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.79 E-value=0.12 Score=47.60 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=29.9
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+|.|||.|..|...|..|+++|++|+++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 47899999999999999999999999999875
No 429
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.73 E-value=0.16 Score=49.85 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=31.1
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..|+|+|+|-.|+++|..|+++|++|++.|++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 4689999999999999999999999999998653
No 430
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.68 E-value=0.17 Score=46.92 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=30.2
Q ss_pred eEEEECCCchHHHHhhccccCC--CeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~ 38 (419)
+|+|||+|-.|.++|..|+..| .+|.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6999999999999999999999 58999999754
No 431
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.64 E-value=0.15 Score=50.73 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=30.3
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
..|+|+|.|.+|++++..|.+.|.+|++.|.++
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 479999999999999999999999999999753
No 432
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.64 E-value=0.18 Score=49.56 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=28.9
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
.+|+|+|.|.+|.++|..|.+ |.+|+|.|.+.
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~ 38 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK 38 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence 579999999999999999995 99999999653
No 433
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.62 E-value=0.2 Score=49.20 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=32.2
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
..++|+|.|-+|+++|..|++.|++|++.|..+..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 47999999999999999999999999999987654
No 434
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.60 E-value=0.15 Score=50.23 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=31.0
Q ss_pred ceEEEECCCchHHHHhhccccCCC-eEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~ 38 (419)
-+|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 479999999999999999999997 8999998654
No 435
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=91.53 E-value=0.098 Score=48.54 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=37.1
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.+.+|||||..||-.+.--.+-|.+||++|..+.+||.+-
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD 251 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD 251 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC
Confidence 4689999999999999999999999999999999999854
No 436
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.47 E-value=0.21 Score=43.09 Aligned_cols=33 Identities=30% Similarity=0.319 Sum_probs=30.7
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
..++|+|.|-.|..+|..|.+.|.+|++.|.+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 579999999999999999999999999999863
No 437
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.44 E-value=0.19 Score=47.93 Aligned_cols=33 Identities=21% Similarity=0.525 Sum_probs=30.7
Q ss_pred ceEEEEC-CCchHHHHhhccccCCCeEEEeccCC
Q 014768 5 YDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 5 ~dvvIIG-aGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
..|.||| .|..|-+.|..|.++|++|+++++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 5799999 89999999999999999999999865
No 438
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.41 E-value=0.19 Score=46.63 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=30.5
Q ss_pred ceEEEECCCchHHHHhhccccCCC-eEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~~ 38 (419)
.+|.|||+|..|...|..|+..|. +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999999876 9999999654
No 439
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.40 E-value=0.16 Score=40.61 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=27.9
Q ss_pred EEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 7 vvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
++|+|+|..+...|..++.-|++|+|+|-++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999854
No 440
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.30 E-value=0.18 Score=46.48 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=30.2
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+|.|||.|..|...|..|++.|++|+++++++
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 79999999999999999999999999999875
No 441
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.29 E-value=0.24 Score=46.03 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=31.3
Q ss_pred cceEEEECCCchHHHHhhccccCCC--eEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~~ 38 (419)
..+|.|||+|-.|.++|+.|+..|. ++.++|.+..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 3799999999999999999999996 8999998643
No 442
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.28 E-value=0.19 Score=49.41 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=33.5
Q ss_pred CCCcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
|..+--|+|||.|-+|+++|..|.+.|++|++.|.++.
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~ 40 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ 40 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence 55556799999999999999999999999999998653
No 443
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.25 E-value=0.72 Score=48.74 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCCCc
Q 014768 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 290 (419)
Q Consensus 234 l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~~~ 290 (419)
+.+.+.+.++++|+++++++.|++|.- ++++.+|++ +|+++.+|.||.+++..|+
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 455667788889999999999999874 456667776 8899999999998887654
No 444
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.20 E-value=0.15 Score=52.84 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=30.7
Q ss_pred ceEEEECCCchHHHHhhccc-cCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La-~~G~~V~vlE~~~~ 38 (419)
..|.|||||..|...|..++ ++|++|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 36999999999999999998 68999999999764
No 445
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.12 E-value=0.2 Score=46.16 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=31.7
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
..+|+|||.|-.|..+|..|.+.|.+|+++++++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999984
No 446
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=91.08 E-value=0.59 Score=47.26 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=40.5
Q ss_pred cHHHHHHHHHH---Hc-CcEEEcCCccceEEEcCCCcEEEEEe----C--------------C-eEEEcCEEEe-CCCCC
Q 014768 233 ELPQAFARLSA---VY-GGTYMLNKPECKVEFDEEGKVVGVTS----E--------------G-ETAKCKKVVC-DPSYL 288 (419)
Q Consensus 233 ~l~~al~~~~~---~~-G~~i~~~~~V~~I~~~~~~~v~gV~~----~--------------g-~~i~ad~VV~-~~~~~ 288 (419)
.+++.|.+.++ +. |++|++++++++++.+ +++|+||.. + + ..+.|+.||+ +.++-
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~ 227 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG 227 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence 57777776654 23 5999999999999984 899999974 1 1 3688998875 44553
No 447
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.06 E-value=0.2 Score=45.15 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=31.6
Q ss_pred cceEEEECCCchHHHHhhccccCC-CeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~ 38 (419)
..+|+|||.|-.|..+|..|++.| .+++++|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 468999999999999999999999 69999998544
No 448
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=91.04 E-value=0.75 Score=45.63 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=38.5
Q ss_pred CcceEEEECCCchHHHHhhccccC-CCeEEEeccC--------CCCCCcccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRN--------DYYGGESSS 45 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~~--------~~~GG~~~t 45 (419)
++||+||||+|.+|..||..+++. |.+|+++|++ +.+||.|-.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence 579999999999999999999997 9999999984 579997753
No 449
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.95 E-value=0.16 Score=52.75 Aligned_cols=33 Identities=33% Similarity=0.257 Sum_probs=30.5
Q ss_pred ceEEEECCCchHHHHhhccc-cCCCeEEEeccCC
Q 014768 5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND 37 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La-~~G~~V~vlE~~~ 37 (419)
..|.|||||..|...|..++ .+|++|+++|.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 46999999999999999999 8899999999865
No 450
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=90.90 E-value=0.19 Score=46.36 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=30.3
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+|.|||.|.-|...|..|+++|++|+++++++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999874
No 451
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.89 E-value=0.17 Score=46.84 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=30.3
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
++.|+|+|-.|...|++|+++|.+|+++=|.+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 689999999999999999999999999888764
No 452
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.88 E-value=0.18 Score=46.55 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=28.5
Q ss_pred EEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768 7 VIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (419)
Q Consensus 7 vvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~ 37 (419)
|.|||+|..|..+|..|+..|. +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999998886 999999985
No 453
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=90.80 E-value=0.75 Score=44.00 Aligned_cols=34 Identities=35% Similarity=0.428 Sum_probs=32.2
Q ss_pred eEEEECCCchHHHHhhccccCC-CeEEEeccCCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY 39 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~~ 39 (419)
||+|||||++||++|..|+++| ++|+|+||.+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 7999999999999999999999 999999998754
No 454
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=90.78 E-value=0.58 Score=44.72 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=31.9
Q ss_pred cceEEEECCCchHHHHhhccccCC--CeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G--~~V~vlE~~~~ 38 (419)
..++||||||.+|+.+|..|.++- .+|+++|++++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 458999999999999999999974 89999999876
No 455
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=90.76 E-value=0.2 Score=41.10 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=27.9
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
...++|+|-|.-|-.+|..|+..|.+|+|.|..|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 3579999999999999999999999999999977
No 456
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.72 E-value=0.23 Score=46.64 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=30.6
Q ss_pred cceEEEECCCchHHHHhhccccCCC-eEEEeccC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~ 36 (419)
..+|+|||+|-.|..+|..|+++|. +++++|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4689999999999999999999997 99999994
No 457
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.67 E-value=0.2 Score=53.07 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=34.2
Q ss_pred CCCcceEEEECCCchHHHH-hhccccCCCeEEEeccCCC
Q 014768 1 MDEEYDVIVLGTGLKECIL-SGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 1 m~~~~dvvIIGaGi~Gl~a-A~~La~~G~~V~vlE~~~~ 38 (419)
|++-.++.|||.|-+|+++ |..|.+.|++|++.|.+..
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~ 39 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG 39 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC
Confidence 6666679999999999999 9999999999999998653
No 458
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.67 E-value=0.24 Score=45.32 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=30.2
Q ss_pred ceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~ 37 (419)
.+|+|||+|-+|.++|+.|++.|. +|+|++|+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 479999999999999999999996 899999974
No 459
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.61 E-value=0.22 Score=48.45 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=31.3
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+|.|||-|..|.++|..|.+.|++|++.|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4799999999999999999999999999998654
No 460
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.51 E-value=0.29 Score=46.85 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=31.9
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
...|+|||.|..|..+|..|...|.+|+|+|.++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 45799999999999999999999999999998763
No 461
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.51 E-value=0.27 Score=48.18 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=31.3
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+|.|||-|-+|++++..|++.|++|++.|....
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 4799999999999999999999999999998653
No 462
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=90.45 E-value=0.34 Score=35.31 Aligned_cols=32 Identities=38% Similarity=0.453 Sum_probs=29.2
Q ss_pred cceEEEECCCchHHHHhhccccC-CCeEEEecc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDR 35 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~-G~~V~vlE~ 35 (419)
..+++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45799999999999999999998 689999998
No 463
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.39 E-value=0.25 Score=46.29 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=30.9
Q ss_pred cceEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~ 37 (419)
..+|+|||+|-.|..+|..|+++|. +++++|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4679999999999999999999997 899999854
No 464
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=90.38 E-value=0.9 Score=43.82 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEeCCCCC
Q 014768 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL 288 (419)
Q Consensus 233 ~l~~al~~~~~~~G~~i~~~~~V~~I~~~~~~~v~gV~~~g~~i~ad~VV~~~~~~ 288 (419)
.+-+-|++.+++.|++++.++.|+.+..++++.+.++..++.+++|+.||.+.+..
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 34556888999999999999999999985334444444466899999999876543
No 465
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=90.36 E-value=0.8 Score=47.26 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=36.4
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCc
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE 42 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (419)
++||||||||++||+||..++++|.+|+|+||.+..+|.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~ 43 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH 43 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 589999999999999999999999999999999887764
No 466
>PRK07045 putative monooxygenase; Reviewed
Probab=90.35 E-value=1 Score=43.19 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=42.8
Q ss_pred cHHHHHHHHHH-HcCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768 233 ELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (419)
Q Consensus 233 ~l~~al~~~~~-~~G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~ 288 (419)
.|-+.|.+.+. ..|++++++++|++|..++++.++.|+. +|+++.||.||.+-+..
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 46677777665 4589999999999999754554566777 88899999999766544
No 467
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.33 E-value=0.2 Score=40.16 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=29.7
Q ss_pred cceEEEECCCchHHHHhhccccCCC-eEEEeccC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~ 36 (419)
+.+|+|||+|-.|...|..|++.|. +++++|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999996 89999984
No 468
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=90.32 E-value=0.89 Score=43.48 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=33.4
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG 40 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (419)
||+|||||++||++|..|+++|++|+|+||++.++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~ 35 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA 35 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence 79999999999999999999999999999998765
No 469
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.29 E-value=0.25 Score=45.24 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=31.4
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+++|||+|-.|..+|..|...|.+|++++++..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5799999999999999999999999999999753
No 470
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.28 E-value=0.21 Score=52.51 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=31.0
Q ss_pred ceEEEECCCchHHHHhhccccCCCe-EEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~-V~vlE~~~~ 38 (419)
.+|||||||..|+-+|..|.+.|.+ |+++++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999999999999999987 999998754
No 471
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.19 E-value=0.32 Score=41.66 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=29.7
Q ss_pred cceEEEECC-CchHHHHhhccccCCCeEEEeccC
Q 014768 4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 4 ~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
..+++|+|| |-.|..+|..|++.|++|+++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999996 999999999999999999999876
No 472
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=90.17 E-value=0.19 Score=49.28 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=31.6
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.+|.|||.|..|...|..|+++|++|+++++++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999754
No 473
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.17 E-value=0.26 Score=43.41 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=30.7
Q ss_pred cceEEEECCCchHHHHhhccccCCC---eEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGL---KVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~---~V~vlE~~~ 37 (419)
+.+++|+|+|-+|..+|..|.+.|. +|.+++++.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 3579999999999999999999996 599999984
No 474
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.97 E-value=0.24 Score=48.76 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=31.6
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
..+|+|+|+|..|+.++..+...|.+|+++|.++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35899999999999999999999999999998754
No 475
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.92 E-value=0.39 Score=42.80 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=32.0
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
...++|+|+|.-+...|..++..|++|+|+|-++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999997654
No 476
>PRK14694 putative mercuric reductase; Provisional
Probab=89.79 E-value=1.2 Score=44.04 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=37.7
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCCCCCccc
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS 44 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (419)
.+|||+|||||++|++||..|++.|++|+|+|++ .+||.|.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 3599999999999999999999999999999996 6899775
No 477
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.76 E-value=0.35 Score=45.09 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=31.8
Q ss_pred CcceEEEECCCchHHHHhhccccCC-CeEEEeccCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY 38 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~ 38 (419)
+..+|.|||+|-.|.+.|..|+..| .++.++|.++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 3568999999999999999999989 68999998753
No 478
>PRK06849 hypothetical protein; Provisional
Probab=89.68 E-value=0.38 Score=46.29 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=34.9
Q ss_pred CCCcceEEEECCCc-hHHHHhhccccCCCeEEEeccCCCC
Q 014768 1 MDEEYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 1 m~~~~dvvIIGaGi-~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
|++...|+|+|++. .|+..|..|.++|++|++++.++..
T Consensus 1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~ 40 (389)
T PRK06849 1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKYP 40 (389)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence 67778999999998 6999999999999999999998643
No 479
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.64 E-value=1.1 Score=43.24 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=33.2
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
++||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence 47999999999999999999999999999999874
No 480
>PRK06834 hypothetical protein; Provisional
Probab=89.61 E-value=1.1 Score=44.62 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=34.0
Q ss_pred CcceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
.++||+|||||++||++|+.|+++|.+|+|+||.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 468999999999999999999999999999999875
No 481
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.55 E-value=0.32 Score=48.13 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=30.4
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
..|.|+|.|-+|+++|..|.+.|.+|++.|++.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 469999999999999999999999999999754
No 482
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=89.53 E-value=0.39 Score=38.81 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=29.8
Q ss_pred eEEEECC-CchHHHHhhccccCC--CeEEEeccCCC
Q 014768 6 DVIVLGT-GLKECILSGLLSVDG--LKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGa-Gi~Gl~aA~~La~~G--~~V~vlE~~~~ 38 (419)
+|.|||+ |-.|.+.|..|...| .++.++|.++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 7999999 999999999999887 47999999754
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.48 E-value=0.27 Score=48.36 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=30.9
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+|+|+|+|-.|...|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999999654
No 484
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=89.44 E-value=0.33 Score=44.03 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=32.1
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY 39 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (419)
+|.+||-|..|...|.+|.++|++|+|+++++.-
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhh
Confidence 6899999999999999999999999999998765
No 485
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.41 E-value=0.33 Score=40.78 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=29.0
Q ss_pred eEEEECCCchHHHHhhccccCCC-eEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~~ 37 (419)
+|+|||+|-.|...|..|++.|. +++++|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999997 599999853
No 486
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.33 E-value=0.38 Score=43.71 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=30.0
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
..++|+|+|-.|.++|..|++.|++|+++.++.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999999999999999999999999998753
No 487
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.32 E-value=0.31 Score=48.65 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=30.7
Q ss_pred ceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
..|.|+|.|.+|+++|..|.+.|++|++.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 469999999999999999999999999999865
No 488
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=89.17 E-value=0.29 Score=45.14 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=30.6
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
+|.|||.|..|...|..|+++|++|+++++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 699999999999999999999999999998753
No 489
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.94 E-value=0.41 Score=41.34 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=30.3
Q ss_pred cceEEEECCCchHHHHhhccccCCC-eEEEeccC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN 36 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~-~V~vlE~~ 36 (419)
+.+|+|||.|-.|..+|..|++.|. +++++|..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4689999999999999999999996 89999984
No 490
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.89 E-value=0.46 Score=45.84 Aligned_cols=35 Identities=20% Similarity=0.064 Sum_probs=31.8
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~~ 38 (419)
...|+|+|.|..|..+|..|...|.+|+++|.++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 35799999999999999999999999999998763
No 491
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.84 E-value=0.31 Score=45.24 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=29.8
Q ss_pred ceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768 5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (419)
Q Consensus 5 ~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~ 37 (419)
.+|.|||+|..|.+.|..|++.|+ +|+++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999995 899999864
No 492
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.83 E-value=0.42 Score=39.12 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=30.3
Q ss_pred cceEEEECCCchHHHHhhccccCC-CeEEEeccCCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY 38 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G-~~V~vlE~~~~ 38 (419)
..+++|||+|..|...|..|++.| .+|++++++..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~ 54 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE 54 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 357999999999999999999986 89999998643
No 493
>PRK06179 short chain dehydrogenase; Provisional
Probab=88.82 E-value=0.45 Score=43.00 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=31.2
Q ss_pred CCCcceEEEECC-CchHHHHhhccccCCCeEEEeccCC
Q 014768 1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 1 m~~~~dvvIIGa-Gi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
|++...++|+|| |-.|...|..|+++|++|+++.++.
T Consensus 1 m~~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 1 MSNSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 666667889986 7778899999999999999998864
No 494
>PRK08163 salicylate hydroxylase; Provisional
Probab=88.79 E-value=1.4 Score=42.45 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768 232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (419)
Q Consensus 232 ~~l~~al~~~~~~~G-~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~ 288 (419)
..+.+.|.+.+.+.| ++++++++|+++..+ ++.+. |++ +|+++.||.||.+.+..
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~-v~~~~g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVT-VFDQQGNRWTGDALIGCDGVK 165 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceE-EEEcCCCEEecCEEEECCCcC
Confidence 347788888887765 899999999999873 55554 444 78889999999877654
No 495
>PLN02697 lycopene epsilon cyclase
Probab=88.73 E-value=1.4 Score=44.04 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=31.5
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
.+||+|||||++||++|..|+++|++|+|+|+.
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 589999999999999999999999999999985
No 496
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=88.70 E-value=0.3 Score=41.91 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=29.9
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN 36 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~ 36 (419)
.-++.|+|+|+.|.+=|...|..||+|.++|-.
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~ 35 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDIL 35 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeecc
Confidence 347999999999999999999999999998853
No 497
>PLN02256 arogenate dehydrogenase
Probab=88.58 E-value=0.47 Score=43.84 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=30.9
Q ss_pred cceEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 4 ~~dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
..+|.|||.|..|-+.|..|.+.|++|+++++++
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 3579999999999999999999999999999875
No 498
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.56 E-value=0.51 Score=43.73 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=31.1
Q ss_pred CcceEEEECCCchHHHHhhccccCCC--eEEEeccCC
Q 014768 3 EEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND 37 (419)
Q Consensus 3 ~~~dvvIIGaGi~Gl~aA~~La~~G~--~V~vlE~~~ 37 (419)
.+.+|.|||+|-.|.++|+.|+..|. ++.++|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 35689999999999999999998884 799999876
No 499
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=88.54 E-value=1.2 Score=44.89 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEeCCCCC
Q 014768 233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL 288 (419)
Q Consensus 233 ~l~~al~~~~~~~-G~~i~~~~~V~~I~~~~~~~v~gV~~-~g~~i~ad~VV~~~~~~ 288 (419)
.+.+.|.+.+++. |++++ ...|+++..++++++.+|.+ +|..+.||.||.+++.+
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF 153 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence 4666777777777 55665 55788887633678999998 78899999999877665
No 500
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.37 E-value=0.37 Score=44.57 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=30.2
Q ss_pred eEEEECCCchHHHHhhccccCCCeEEEeccCC
Q 014768 6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND 37 (419)
Q Consensus 6 dvvIIGaGi~Gl~aA~~La~~G~~V~vlE~~~ 37 (419)
+|.|||.|..|...|..|+++|++|+++++++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 69999999999999999999999999999874
Done!