BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014774
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 25/148 (16%)
Query: 46 RNSFDNQSCDNSPDDIVLKMIYSIVCLEELVVYTPFSKAGLDSWLMLAGSTLKHLELRMD 105
R +F S D+ PD+++L I+S +CL EL+ + K W LA + L +D
Sbjct: 1 RENFPGVSWDSLPDELLLG-IFSCLCLPELLKVSGVCKR----WYRLASD--ESLWQTLD 53
Query: 106 NLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPA 165
L N +E L G+L S KLQNL + G RL DP
Sbjct: 54 EFRVQHMDLSNSV----------IEVSTLHGILSQCS-------KLQNLSLEGLRLSDPI 96
Query: 166 LSTALRACPNLTNLLLLGCEGVRSVSIE 193
++T L NL L L GC G +++
Sbjct: 97 VNT-LAKNSNLVRLNLSGCSGFSEFALQ 123
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 39/174 (22%)
Query: 46 RNSFDNQSCDNSPDDIVLKMIYSIVCLEELVVYTPFSKAGLDSWLMLAG--STLKHLELR 103
R +F S D+ PD+++L I+S +CL EL+ + K W LA S + L+L
Sbjct: 1 RENFPGVSWDSLPDELLLG-IFSCLCLPELLKVSGVCK----RWYRLASDESLWQTLDLT 55
Query: 104 MDNLAD-------YQGCLE----------------NPSKLDCISRAKN-LESLKLWGVLM 139
NL QG + +P ++ + + + +E L G+L
Sbjct: 56 GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 115
Query: 140 VSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIE 193
S KLQNL + G RL DP ++T L NL L L GC G +++
Sbjct: 116 QCS-------KLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQ 161
>pdb|1B25|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B4N|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
Length = 619
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 265 TLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVD-FVEFFNNHPKL--- 320
+ GV + WD + K + Y EF G +D +P F E + P
Sbjct: 511 AITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEH 570
Query: 321 ---QKFD--------IHGAMFAALCQKNSLKNVESGFVIPCLEEVV 355
+K+D I G + +K +LK ++ FVIP LE+V
Sbjct: 571 LDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVT 616
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 296 TGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVV 355
TG F T P D V+ +N P Q D GA+ A + K V + ++++
Sbjct: 195 TGIFRT-DNVPAEDVVKIVDNFPG-QSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLL 252
Query: 356 VTVRSPLNAEQKMSTLESLLKYGKNL 381
+ P EQ T+E LL+YG L
Sbjct: 253 NSFDGPPTFEQPKMTIEKLLEYGNML 278
>pdb|2CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Cki7
Length = 297
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 170 LRACPNLTNLLLLGCEGVRSV-SIEL--PHLEQCKLDFYGLGNCSLSVS------CPKIQ 220
L C + N+ G EG+ +V I+L P LE LD G +V+ ++Q
Sbjct: 61 LAGCTGIPNVYYFGQEGLHNVLVIDLLGPSLEDL-LDLCGRKFSVKTVAMAAKQMLARVQ 119
Query: 221 FLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFG 256
+ + + ++ N L S NA +Y+VDFG
Sbjct: 120 SIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFG 155
>pdb|1EH4|A Chain A, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1EH4|B Chain B, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Mgatp
Length = 298
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 170 LRACPNLTNLLLLGCEGVRSV-SIEL--PHLEQCKLDFYGLGNCSLSVS------CPKIQ 220
L C + N+ G EG+ +V I+L P LE LD G +V+ ++Q
Sbjct: 62 LAGCTGIPNVYYFGQEGLHNVLVIDLLGPSLEDL-LDLCGRKFSVKTVAMAAKQMLARVQ 120
Query: 221 FLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFG 256
+ + + ++ N L S NA +Y+VDFG
Sbjct: 121 SIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFG 156
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 140 VSSPKW-DVFHKLQNLEIVGARLEDPALS--------TALRACPNLTNLLL----LGCEG 186
+S +W ++ LQ E+V RL+D L+ +ALRA P+LT L L LG G
Sbjct: 11 LSDARWTELLPLLQQYEVV--RLDDCGLTEEHCKDIGSALRANPSLTELCLRTNELGDAG 68
Query: 187 VRSV--SIELPHLEQCKLDFYGLGNCSLS 213
V V ++ P CK+ L NCSL+
Sbjct: 69 VHLVLQGLQSP---TCKIQKLSLQNCSLT 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,416,719
Number of Sequences: 62578
Number of extensions: 436650
Number of successful extensions: 862
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 859
Number of HSP's gapped (non-prelim): 15
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)